locus_tag old_locus_tag gene Name start end strand product note type ID NCBI TREPR_0001 TREPR_0001 TREPR_0001 278654 279871 + putative O-acyltransferase identified by match to protein family HMM PF01757 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0001 TREPR_0002 TREPR_0002 TREPR_0002 277433 278572 + conserved hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0002 TREPR_0003 TREPR_0003 TREPR_0003 275985 277424 + probable poly(beta-D-mannuronate) O-acetylase (Alginatebiosynthesis protein AlgI) identified by match to protein family HMM PF03062 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0003 TREPR_0004 TREPR_0004 TREPR_0004 274489 275949 + putative polysaccharide biosynthesis/export domain protein gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0004 TREPR_0005 TREPR_0005 TREPR_0005 273488 274492 + putative lipopolysaccharide biosynthesis identified by match to protein family HMM PF02706 gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0005 TREPR_0006 TREPR_0006 TREPR_0006 272286 273476 + polysaccharide biosynthesis protein CapD identified by match to protein family HMM PF02719 gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0006 TREPR_0007 TREPR_0007 TREPR_0007 271604 272269 + sugar transferase identified by match to protein family HMM PF02397 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0007 TREPR_0008 TREPR_0008 TREPR_0008 270687 271607 + NAD-dependent epimerase/dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0008 TREPR_0009 TREPR_0009 TREPR_0009 269679 270644 + dTDP-rhamnosyl transferase RfbG identified by match to protein family HMM PF00535 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0009 TREPR_0010 TREPR_0010 TREPR_0010 268298 269365 + glycosyltransferase%2C group 1 family identified by match to protein family HMM PF00534 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0010 TREPR_0011 TREPR_0011 TREPR_0011 267581 268276 + O-methyltransferase gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0011 TREPR_0012 TREPR_0012 TREPR_0012 266358 267467 + capsular polysaccharide biosynthesis protein identified by match to protein family HMM PF00534 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0012 TREPR_0013 TREPR_0013 TREPR_0013 264981 266288 + putative membrane protein overlaps another CDS with the same product name gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0013 TREPR_0014 TREPR_0014 TREPR_0014 263560 264981 + putative membrane protein overlaps another CDS with the same product name gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0014 TREPR_0015 TREPR_0015 TREPR_0015 263087 263563 + hypothetical protein identified by glimmer%3B putative gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0015 TREPR_0016 TREPR_0016 TREPR_0016 262987 263124 + hypothetical protein identified by glimmer%3B putative gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0016 TREPR_0017 TREPR_0017 TREPR_0017 262264 262938 + conserved hypothetical protein identified by match to protein family HMM PF00702 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0017 TREPR_0018 TREPR_0018 TREPR_0018 261890 262258 + transporter gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0018 TREPR_0019 TREPR_0019 TREPR_0019 260934 261893 + prenyltransferase%2C UbiA family identified by match to protein family HMM PF01040 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0019 TREPR_0020 TREPR_0020 TREPR_0020 259942 260937 + glycosyltransferase identified by match to protein family HMM PF00535 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0020 TREPR_0021 TREPR_0021 TREPR_0021 259142 259918 + glycosyltransferase family 32 identified by match to protein family HMM PF04488 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0021 TREPR_0022 TREPR_0022 TREPR_0022 258381 259094 + glycosyltransferase sugar-binding region DXD domain protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0022 TREPR_0024 TREPR_0024 TREPR_0024 256792 258108 + putative O-unit flippase gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0024 TREPR_0025 TREPR_0025 TREPR_0025 256579 256734 + hypothetical protein identified by glimmer%3B putative gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0025 TREPR_0026 TREPR_0026 TREPR_0026 256307 256543 + putative pyruvate-formate lyase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0026 TREPR_0027 TREPR_0027 TREPR_0027 256006 256146 + hypothetical protein%3B this region contains one or more premature stops and/or frameshifts%3Bidentified by glimmer%3B putative pseudogene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0027 TREPR_0030 TREPR_0030 TREPR_0030 254525 255451 + hypothetical protein identified by glimmer%3B putative gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0030 TREPR_0031 TREPR_0031 TREPR_0031 253910 254401 + hypothetical protein identified by glimmer%3B putative gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0031 TREPR_0032 TREPR_0032 TREPR_0032 253546 253743 + hypothetical protein identified by glimmer%3B putative gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0032 TREPR_0033 TREPR_0033 mtnP mtnP 252588 253334 + methylthioadenosine phosphorylase identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01694 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0033 TREPR_0034 TREPR_0034 TREPR_0034 251928 252545 + class II aldolase and adducin N-terminal domain protein identified by match to protein family HMM PF00596 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0034 TREPR_0035 TREPR_0035 mtnA mtnA 250805 251935 + S-methyl-5-thioribose-1-phosphate isomerase identified by match to protein family HMM PF01008%3B match to protein family HMM TIGR00512%3B match to protein family HMM TIGR00524 gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0035 TREPR_0037 TREPR_0037 TREPR_0037 248979 250403 + hypothetical protein identified by glimmer%3B putative gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0037 TREPR_0038 TREPR_0038 TREPR_0038 247266 248966 + hypothetical protein identified by glimmer%3B putative gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0038 TREPR_0039 TREPR_0039 TREPR_0039 245958 247148 + DNA polymerase IV identified by match to protein family HMM PF00817 gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0039 TREPR_0040 TREPR_0040 TREPR_0040 244555 245904 + galactokinase identified by match to protein family HMM PF00288 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0040 TREPR_0041 TREPR_0041 TREPR_0041 243511 244494 + hypothetical protein identified by glimmer%3B putative gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0041 TREPR_0042 TREPR_0042 TREPR_0042 241759 243375 + putative tetratricopeptide TPR_2 repeat protein gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0042 TREPR_0043 TREPR_0043 TREPR_0043 239774 241756 + tetratricopeptide repeat domain protein identified by match to protein family HMM PF07719 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0043 TREPR_0044 TREPR_0044 TREPR_0044 238938 239774 + putative lipoprotein gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0044 TREPR_0045 TREPR_0045 TREPR_0045 234969 238925 + probable extracellular nuclease identified by match to protein family HMM PF02415%3B match to protein family HMM PF03781 gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0045 TREPR_0046 TREPR_0046 TREPR_0046 231989 234967 + probable extracellular nuclease gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0046 TREPR_0047 TREPR_0047 TREPR_0047 229042 231918 + conserved hypothetical protein identified by match to protein family HMM PF07523 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0047 TREPR_0048 TREPR_0048 TREPR_0048 228903 229043 - hypothetical protein identified by glimmer%3B putative gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0048 TREPR_0049 TREPR_0049 TREPR_0049 226881 228842 - cell division protease FtsH identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0049 TREPR_0050 TREPR_0050 TREPR_0050 226519 226872 + putative DNA-binding protein identified by match to protein family HMM PF01381 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0050 TREPR_0051 TREPR_0051 TREPR_0051 225501 226424 + conserved hypothetical protein gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0051 TREPR_0052 TREPR_0052 TREPR_0052 223548 225371 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0052 TREPR_0054 TREPR_0054 TREPR_0054 221645 222757 + conserved hypothetical protein gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0054 TREPR_0055 TREPR_0055 TREPR_0055 220759 221529 - metal dependent phosphohydrolase gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0055 TREPR_0056 TREPR_0056 TREPR_0056 218541 220751 - putative lipoprotein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0056 TREPR_0057 TREPR_0057 TREPR_0057 217865 218536 - virginiamycin A acetyltransferase identified by match to protein family HMM PF00132 gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0057 TREPR_0058 TREPR_0058 TREPR_0058 217015 217833 + metallophosphoesterase identified by match to protein family HMM PF00149 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0058 TREPR_0059 TREPR_0059 TREPR_0059 216359 216958 - hypothetical protein identified by glimmer%3B putative gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0059 TREPR_0060 TREPR_0060 TREPR_0060 214743 216260 - carboxyl- protease identified by match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225 gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0060 TREPR_0061 TREPR_0061 TREPR_0061 213857 214738 - conserved hypothetical protein identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0061 TREPR_0062 TREPR_0062 TREPR_0062 212279 213085 + RNA methyltransferase%2C TrmH family%2C group 1 identified by match to protein family HMM PF00588 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0062 TREPR_0063 TREPR_0063 TREPR_0063 213066 213884 - glycosyltransferase%2C WecB/TagA/CpsF family identified by match to protein family HMM PF03808%3B match to protein family HMM TIGR00696 gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0063 TREPR_0064 TREPR_0064 TREPR_0064 211484 212053 - anti-anti-sigma factor identified by match to protein family HMM PF01740%3B match to protein family HMM TIGR00377 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0064 TREPR_0065 TREPR_0065 TREPR_0065 211072 211449 - hypothetical protein identified by glimmer%3B putative gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0065 TREPR_0066 TREPR_0066 TREPR_0066 210340 211038 - phage shock protein A%2C PspA identified by match to protein family HMM PF04012 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0066 TREPR_0068 TREPR_0068 TREPR_0068 208993 209985 - putative membrane protein overlaps another CDS with the same product name gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0068 TREPR_0070 TREPR_0070 TREPR_0070 207176 208996 - putative membrane protein overlaps another CDS with the same product name gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0070 TREPR_0071 TREPR_0071 TREPR_0071 205707 207101 - putative neutral metalloprotease gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0071 TREPR_0072 TREPR_0072 murA murA 204420 205700 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0072 TREPR_0073 TREPR_0073 cdsA_1 cdsA_1 203711 204361 + phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0073 TREPR_0075 TREPR_0075 TREPR_0075 199550 203389 + tetratricopeptide repeat domain protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0075 TREPR_0076 TREPR_0076 TREPR_0076 199361 199507 + hypothetical protein identified by glimmer%3B putative gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0076 TREPR_0077 TREPR_0077 TREPR_0077 198628 199386 - conserved hypothetical protein identified by match to protein family HMM PF02922 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0077 TREPR_0078 TREPR_0078 TREPR_0078 195135 198515 - multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0078 TREPR_0079 TREPR_0079 TREPR_0079 192242 193405 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM PF04015 gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0079 TREPR_0080 TREPR_0080 TREPR_0080 193356 195098 - conserved hypothetical protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0080 TREPR_0081 TREPR_0081 TREPR_0081 191145 192176 + putative periplasmic binding proteins and sugar binding domain of the LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0081 TREPR_0084 TREPR_0084 TREPR_0084 189691 190860 - PotD protein identified by match to protein family HMM PF01547 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0084 TREPR_0085 TREPR_0085 TREPR_0085 188568 189635 - spermidine/putrescine import ATP-binding protein PotA identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM PF08402 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0085 TREPR_0086 TREPR_0086 TREPR_0086 187714 188568 - PotB protein identified by match to protein family HMM PF00528 gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0086 TREPR_0087 TREPR_0087 TREPR_0087 186842 187702 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0087 TREPR_0088 TREPR_0088 TREPR_0088 185930 186817 - putative phosphodiesterase identified by match to protein family HMM PF03009 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0088 TREPR_0089 TREPR_0089 TREPR_0089 185040 185921 - conserved hypothetical protein identified by match to protein family HMM PF08902 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0089 TREPR_0090 TREPR_0090 TREPR_0090 184673 184849 - hypothetical protein identified by glimmer%3B putative gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0090 TREPR_0098 TREPR_0098 TREPR_0098 177762 178364 + conserved hypothetical protein gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0098 TREPR_0099 TREPR_0099 TREPR_0099 176719 177555 + conserved hypothetical protein identified by match to protein family HMM TIGR01784 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0099 TREPR_0100 TREPR_0100 TREPR_0100 176257 176649 + transposase IS66 identified by match to protein family HMM PF03050 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0100 TREPR_0101 TREPR_0101 TREPR_0101 173472 176051 + hypothetical protein identified by glimmer%3B putative gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0101 TREPR_0102 TREPR_0102 TREPR_0102 173378 173512 + putative lipoprotein gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0102 TREPR_0103 TREPR_0103 TREPR_0103 173083 173208 + hypothetical protein identified by glimmer%3B putative gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0103 TREPR_0104 TREPR_0104 TREPR_0104 172896 173030 - hypothetical protein identified by glimmer%3B putative gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0104 TREPR_0105 TREPR_0105 TREPR_0105 172702 172893 - hypothetical protein identified by glimmer%3B putative gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0105 TREPR_0106 TREPR_0106 TREPR_0106 172070 172660 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0106 TREPR_0107 TREPR_0107 TREPR_0107 171687 171941 + hypothetical protein identified by glimmer%3B putative gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0107 TREPR_0108 TREPR_0108 TREPR_0108 170093 171211 - multiple sugar-binding transport ATP-binding protein MsmK identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0108 TREPR_0109 TREPR_0109 smc smc 166771 169764 - chromosome segregation protein SMC identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR02168 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0109 TREPR_0110 TREPR_0110 TREPR_0110 166107 166760 + putative lipoprotein gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0110 TREPR_0111 TREPR_0111 TREPR_0111 165389 166105 + conserved hypothetical protein gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0111 TREPR_0112 TREPR_0112 TREPR_0112 164175 165371 + hypothetical protein identified by glimmer%3B putative gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0112 TREPR_0113 TREPR_0113 TREPR_0113 163717 164178 + hypothetical protein identified by glimmer%3B putative gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0113 TREPR_0114 TREPR_0114 TREPR_0114 162124 163485 - putative lipoprotein gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0114 TREPR_0116 TREPR_0116 TREPR_0116 161270 161932 + putative protease PrsW (Protease responsible for activating sigma-W) gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0116 TREPR_0117 TREPR_0117 aroK aroK 160608 161240 - shikimate kinase identified by match to protein family HMM PF01202 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0117 TREPR_0118 TREPR_0118 TREPR_0118 159162 160430 - putative substrate binding protein identified by match to protein family HMM PF01547 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0118 TREPR_0119 TREPR_0119 TREPR_0119 157791 159149 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0119 TREPR_0120 TREPR_0120 metH metH 154043 157774 + methionine synthase identified by match to protein family HMM PF00809%3B match to protein family HMM PF02310%3B match to protein family HMM PF02574%3B match to protein family HMM PF02607%3B match to protein family HMM PF02965%3B match to protein family HMM TIGR02082 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0120 TREPR_0121 TREPR_0121 TREPR_0121 153099 153929 - serine/threonine-protein kinase Pkn1 identified by match to protein family HMM PF03781 gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0121 TREPR_0122 TREPR_0122 TREPR_0122 151136 153097 - von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0122 TREPR_0123 TREPR_0123 TREPR_0123 148846 151005 + peptidase%2C U32 family identified by match to protein family HMM PF01136 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0123 TREPR_0124 TREPR_0124 TREPR_0124 148515 148664 - hypothetical protein identified by glimmer%3B putative gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0124 TREPR_0125 TREPR_0125 TREPR_0125 147662 148132 + single-stranded DNA-binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0125 TREPR_0126 TREPR_0126 TREPR_0126 145656 147533 + hypothetical protein identified by glimmer%3B putative gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0126 TREPR_0128 TREPR_0128 TREPR_0128 145544 145657 - hypothetical protein identified by glimmer%3B putative gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0128 TREPR_0129 TREPR_0129 TREPR_0129 144529 145500 + cation efflux family protein identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0129 TREPR_0130 TREPR_0130 TREPR_0130 143288 144526 + DegP protease identified by match to protein family HMM PF00089 gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0130 TREPR_0131 TREPR_0131 TREPR_0131 142246 143037 - transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220%3B match to protein family HMM PF08279 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0131 TREPR_0132 TREPR_0132 TREPR_0132 141259 142056 - transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220%3B match to protein family HMM PF08279 gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0132 TREPR_0133 TREPR_0133 TREPR_0133 140469 141236 + sorbose reductase SOU1 (Sorbitol utilization proteinSOU1) identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0133 TREPR_0134 TREPR_0134 TREPR_0134 139422 140456 + D-xylulose reductase (Xylitol dehydrogenase) (XDH) identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0134 TREPR_0135 TREPR_0135 TREPR_0135 138802 139335 + 6%2C7-dihydropteridine reductase identified by match to protein family HMM PF00881 gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0135 TREPR_0136 TREPR_0136 thrS thrS 136970 138787 + threonine--tRNA ligase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0136 TREPR_0138 TREPR_0138 TREPR_0138 135735 136463 - hypothetical protein identified by glimmer%3B putative gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0138 TREPR_0139 TREPR_0139 TREPR_0139 134585 135640 - conserved hypothetical protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0139 TREPR_0140 TREPR_0140 TREPR_0140 134066 134575 - N-acetyltransferase Ats1 identified by match to protein family HMM PF00583 gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0140 TREPR_0141 TREPR_0141 TREPR_0141 132794 133870 + polysaccharide deacetylase domain protein identified by match to protein family HMM PF01522 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0141 TREPR_0142 TREPR_0142 TREPR_0142 131925 132731 - phosphopantothenoylcysteine synthetase/decarboxylase identified by match to protein family HMM PF04127 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0142 TREPR_0143 TREPR_0143 TREPR_0143 131377 131928 - coenzyme A biosynthesis bifunctional protein coaBC (DNA/pantothenatemetabolism flavoprotein) identified by match to protein family HMM PF02441 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0143 TREPR_0144 TREPR_0144 TREPR_0144 130355 131380 - peptidase family T4 identified by match to protein family HMM PF03576 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0144 TREPR_0145 TREPR_0145 TREPR_0145 129514 130362 - 3'-5' exonuclease domain protein identified by match to protein family HMM PF01612 gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0145 TREPR_0146 TREPR_0146 TREPR_0146 128822 129499 - acetyltransferase identified by match to protein family HMM PF00583 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0146 TREPR_0147 TREPR_0147 TREPR_0147 128593 128802 - conserved hypothetical protein gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0147 TREPR_0148 TREPR_0148 proA proA 127322 128581 - glutamate-5-semialdehyde dehydrogenase identified by match to protein family HMM TIGR00407 gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0148 TREPR_0149 TREPR_0149 proB proB 126513 127304 - glutamate 5-kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR01027 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0149 TREPR_0150 TREPR_0150 TREPR_0150 126277 126486 - conserved domain protein gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0150 TREPR_0151 TREPR_0151 TREPR_0151 126054 126215 + EF-hand calcium-binding domain protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0151 TREPR_0154 TREPR_0154 TREPR_0154 123347 125155 - ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0154 TREPR_0155 TREPR_0155 proC proC 122394 123269 - pyrroline-5-carboxylate reductase identified by match to protein family HMM PF01210%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112 gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0155 TREPR_0156 TREPR_0156 TREPR_0156 121577 122371 + putative PHP domain protein identified by match to protein family HMM PF02811 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0156 TREPR_0157 TREPR_0157 TREPR_0157 119858 121570 + acyl-coenzyme A synthetase ACSM3 identified by match to protein family HMM PF00501 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0157 TREPR_0158 TREPR_0158 TREPR_0158 119308 119856 + transcriptional regulator%2C XRE family with cupin sensor identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0158 TREPR_0159 TREPR_0159 TREPR_0159 118677 119177 + hypothetical protein identified by glimmer%3B putative gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0159 TREPR_0160 TREPR_0160 TREPR_0160 118328 118543 + hypothetical protein identified by glimmer%3B putative gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0160 TREPR_0161 TREPR_0161 TREPR_0161 116980 118329 - putative signal transduction histidine kinase%2C nitrogen specific%2C NtrB identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0161 TREPR_0162 TREPR_0162 TREPR_0162 115568 116983 - sigma-54 dependent transcriptional regulator/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0162 TREPR_0163 TREPR_0163 TREPR_0163 114534 115388 - RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0163 TREPR_0164 TREPR_0164 TREPR_0164 113131 114240 - divergent polysaccharide deacetylase family identified by match to protein family HMM PF04748 gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0164 TREPR_0165 TREPR_0165 TREPR_0165 112092 113150 - probable O-sialoglycoprotein endopeptidase (Glycoprotease) identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0165 TREPR_0166 TREPR_0166 TREPR_0166 111712 112056 + ChpK identified by match to protein family HMM PF02452 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0166 TREPR_0167 TREPR_0167 TREPR_0167 111117 111602 + hypothetical protein identified by glimmer%3B putative gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0167 TREPR_0168 TREPR_0168 TREPR_0168 109825 111102 + putative radical SAM domain protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0168 TREPR_0169 TREPR_0169 TREPR_0169 108749 109810 + ABC transporter component A gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0169 TREPR_0170 TREPR_0170 TREPR_0170 107847 108683 + taurine transport system permease protein TauC identified by match to protein family HMM PF00528 gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0170 TREPR_0171 TREPR_0171 TREPR_0171 106946 107845 + nitrate transport ATP-binding protein NrtC identified by match to protein family HMM PF00005 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0171 TREPR_0173 TREPR_0173 pepT pepT 105418 106680 - peptidase T identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01882 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0173 TREPR_0174 TREPR_0174 TREPR_0174 104531 105418 - conserved hypothetical protein gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0174 TREPR_0175 TREPR_0175 TREPR_0175 102564 104477 + AMP-binding enzyme family protein identified by match to protein family HMM PF00501 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0175 TREPR_0176 TREPR_0176 TREPR_0176 101409 102164 + rare lipoprotein A identified by match to protein family HMM PF03330 gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0176 TREPR_0177 TREPR_0177 TREPR_0177 100170 101258 + hypothetical protein identified by glimmer%3B putative gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0177 TREPR_0178 TREPR_0178 TREPR_0178 99054 100004 - ATPase%2C AAA family identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0178 TREPR_0179 TREPR_0179 TREPR_0179 97892 99085 - conserved hypothetical protein identified by match to protein family HMM PF01882 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0179 TREPR_0180 TREPR_0180 TREPR_0180 93895 97914 - putative membrane protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF01841%3B match to protein family HMM PF07719 gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0180 TREPR_0181 TREPR_0181 TREPR_0181 93435 93890 + thioesterase family protein identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051 gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0181 TREPR_0182 TREPR_0182 TREPR_0182 92921 93436 - MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0182 TREPR_0183 TREPR_0183 TREPR_0183 91482 92903 - multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0183 TREPR_0184 TREPR_0184 TREPR_0184 90446 91513 - putative signaling protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0184 TREPR_0185 TREPR_0185 TREPR_0185 89156 90346 - extracellular ligand-binding receptor identified by match to protein family HMM PF01094 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0185 TREPR_0186 TREPR_0186 TREPR_0186 88431 88814 + conserved hypothetical protein identified by match to protein family HMM TIGR00305 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0186 TREPR_0187 TREPR_0187 TREPR_0187 88147 88434 + prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0187 TREPR_0188 TREPR_0188 TREPR_0188 87811 88050 - putative prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0188 TREPR_0189 TREPR_0189 TREPR_0189 87419 87814 - PilT protein domain protein identified by match to protein family HMM PF01850 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0189 TREPR_0190 TREPR_0190 TREPR_0190 85559 87334 + sulfatase domain protein identified by match to protein family HMM PF00884 gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0190 TREPR_0191 TREPR_0191 TREPR_0191 84721 85575 + methyltransferase family protein identified by match to protein family HMM PF08241 gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0191 TREPR_0192 TREPR_0192 TREPR_0192 83165 84631 + putative ClpX%2C ATPase regulatory subunit identified by match to protein family HMM PF02563 gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0192 TREPR_0193 TREPR_0193 TREPR_0193 82437 83168 + putative lipopolysaccharide biosynthesis protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0193 TREPR_0194 TREPR_0194 TREPR_0194 81253 82020 + glycosyltransferase%2C group 2 family identified by match to protein family HMM PF00535 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0194 TREPR_0195 TREPR_0195 TREPR_0195 80146 81249 + WfbF identified by match to protein family HMM PF00534 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0195 TREPR_0196 TREPR_0196 TREPR_0196 79190 80074 + methyltransferase FkbM gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0196 TREPR_0197 TREPR_0197 TREPR_0197 78818 79132 + methyltransferase type 11%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0197 TREPR_0198 TREPR_0198 TREPR_0198 78581 78751 + methyltransferase type 11%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0198 TREPR_0199 TREPR_0199 TREPR_0199 78445 78570 + hypothetical protein identified by glimmer%3B putative gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0199 TREPR_0200 TREPR_0200 TREPR_0200 77215 78372 + hypothetical protein identified by glimmer%3B putative gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0200 TREPR_0201 TREPR_0201 TREPR_0201 75939 77114 + putative membrane protein gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0201 TREPR_0202 TREPR_0202 TREPR_0202 75026 75928 + dtdp-4-dehydrorhamnose reductase identified by match to protein family HMM PF01370%3B match to protein family HMM PF04321 gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0202 TREPR_0203 TREPR_0203 TREPR_0203 74016 75029 + glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0203 TREPR_0204 TREPR_0204 TREPR_0204 73733 73990 + conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0204 TREPR_0206 TREPR_0206 TREPR_0206 73099 73509 + conserved hypothetical protein%3B this region contains one or more premature stops and/or frameshifts pseudogene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0206 TREPR_0207 TREPR_0207 TREPR_0207 72221 73042 + methyltransferase FkbM family identified by match to protein family HMM TIGR01444 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0207 TREPR_0209 TREPR_0209 TREPR_0209 70859 72220 + putative membrane protein gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0209 TREPR_0210 TREPR_0210 TREPR_0210 69853 70815 + UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0210 TREPR_0211 TREPR_0211 TREPR_0211 69569 69706 - hypothetical protein identified by glimmer%3B putative gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0211 TREPR_0212 TREPR_0212 TREPR_0212 69120 69557 + putative virulence-associated protein identified by match to protein family HMM PF01850 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0212 TREPR_0213 TREPR_0213 TREPR_0213 68933 69157 + putative virulence protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0213 TREPR_0214 TREPR_0214 TREPR_0214 68140 68823 - conserved hypothetical protein gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0214 TREPR_0215 TREPR_0215 TREPR_0215 67265 68143 - conserved hypothetical protein identified by match to protein family HMM PF08843 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0215 TREPR_0216 TREPR_0216 TREPR_0216 66816 67217 + PIN domain protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0216 TREPR_0217 TREPR_0217 TREPR_0217 66589 66819 + conserved hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0217 TREPR_0218 TREPR_0218 TREPR_0218 64646 66319 + GMP synthase (glutamine-hydrolyzing) identified by match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888 gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0218 TREPR_0219 TREPR_0219 purA purA 63334 64566 + adenylosuccinate synthase identified by match to protein family HMM PF00709%3B match to protein family HMM TIGR00184 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0219 TREPR_0220 TREPR_0220 TREPR_0220 61820 63142 - maltose-binding protein identified by match to protein family HMM PF01547 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0220 TREPR_0221 TREPR_0221 TREPR_0221 60899 61741 - ABC-type sugar transport system%2C permease component identified by match to protein family HMM PF00528 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0221 TREPR_0222 TREPR_0222 TREPR_0222 60048 60902 - sugar permease identified by match to protein family HMM PF00528 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0222 TREPR_0223 TREPR_0223 malQ malQ 58517 60043 - 4-alpha-glucanotransferase identified by match to protein family HMM PF02446%3B match to protein family HMM TIGR00217 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0223 TREPR_0224 TREPR_0224 TREPR_0224 58035 58421 - glyoxalase family protein identified by match to protein family HMM PF00903 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0224 TREPR_0225 TREPR_0225 TREPR_0225 57401 58033 - conserved hypothetical protein gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0225 TREPR_0226 TREPR_0226 guaB guaB 55944 57380 + inosine-5'-monophosphate dehydrogenase identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0226 TREPR_0227 TREPR_0227 TREPR_0227 54448 55920 + putative adenylosuccinate lyase identified by match to protein family HMM PF00206 gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0227 TREPR_0228 TREPR_0228 TREPR_0228 54022 54408 + hypothetical protein identified by glimmer%3B putative gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0228 TREPR_0229 TREPR_0229 TREPR_0229 51714 53819 + O-acetylhomoserine (thiol)-lyase (O-acetylhomoserinesulfhydrylase) (OAH sulfhydrylase) (Homocysteine synthase) identified by match to protein family HMM PF00037%3B match to protein family HMM PF01053%3B match to protein family HMM TIGR01326 gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0229 TREPR_0230 TREPR_0230 TREPR_0230 50526 51497 - cytochrome c biogenesis protein identified by match to protein family HMM PF02683 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0230 TREPR_0231 TREPR_0231 TREPR_0231 49877 50491 - redoxin identified by match to protein family HMM PF00085%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0231 TREPR_0232 TREPR_0232 TREPR_0232 49751 49864 - hypothetical protein identified by glimmer%3B putative gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0232 TREPR_0233 TREPR_0233 TREPR_0233 48491 49579 - MemBrane lipoprotein TpN38(b) identified by match to protein family HMM PF02608 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0233 TREPR_0234 TREPR_0234 TREPR_0234 46904 48457 - ribose import ATP-binding protein RbsA 1 identified by match to protein family HMM PF00005 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0234 TREPR_0235 TREPR_0235 TREPR_0235 45811 46911 - branched-chain amino acid ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0235 TREPR_0236 TREPR_0236 TREPR_0236 44906 45814 - ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0236 TREPR_0237 TREPR_0237 TREPR_0237 43968 44837 + conserved hypothetical protein identified by match to protein family HMM PF01988 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0237 TREPR_0238 TREPR_0238 TREPR_0238 43256 43966 + conserved hypothetical protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0238 TREPR_0239 TREPR_0239 TREPR_0239 41722 43269 + membrane protein identified by match to protein family HMM PF07556 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0239 TREPR_0240 TREPR_0240 TREPR_0240 39525 41555 - 4-alpha-glucanotransferase (Amylomaltase)(Disproportionating enzyme) (D-enzyme) identified by match to protein family HMM PF02446 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0240 TREPR_0241 TREPR_0241 TREPR_0241 35628 39512 - alpha amylase catalytic region identified by match to protein family HMM PF00128 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0241 TREPR_0242 TREPR_0242 TREPR_0242 34257 35549 - putative RNA nucleotidyltransferase identified by match to protein family HMM TIGR00277 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0242 TREPR_0243 TREPR_0243 TREPR_0243 33290 34156 - nitrite/sulfite reductase%2C 4Fe-4S iron-sulfur cluster-binding domain protein identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0243 TREPR_0244 TREPR_0244 TREPR_0244 33039 33293 - SirA family protein identified by match to protein family HMM PF01206 gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0244 TREPR_0245 TREPR_0245 TREPR_0245 32180 33028 - Uba/ThiF-type NAD/FAD-binding protein identified by match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0245 TREPR_0246 TREPR_0246 TREPR_0246 30802 32160 + oxidoreductase/nitrogenase%2C component 1 identified by match to protein family HMM PF00148 gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0246 TREPR_0247 TREPR_0247 TREPR_0247 29477 30799 + putative oxidoreductase/nitrogenase%2C component 1 identified by match to protein family HMM PF00148 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0247 TREPR_0248 TREPR_0248 TREPR_0248 28502 29380 + nitrogenase iron protein 1 (Nitrogenase component II)(Nitrogenase Fe protein 1) (Nitrogenase reductase) identified by match to protein family HMM PF00142 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0248 TREPR_0249 TREPR_0249 TREPR_0249 26910 28295 + sulfate adenylyltransferase subunit 1 identified by match to protein family HMM PF00009 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0249 TREPR_0250 TREPR_0250 TREPR_0250 26014 26910 + sulfate adenylyltransferase subunit 2 identified by match to protein family HMM PF01507 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0250 TREPR_0251 TREPR_0251 TREPR_0251 25307 26017 + adenosine 5'-phosphosulfate reductase identified by match to protein family HMM PF01507 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0251 TREPR_0252 TREPR_0252 TREPR_0252 24250 25317 + sulfate/thiosulfate import ATP-binding protein CysA identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00968 gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0252 TREPR_0253 TREPR_0253 cysW cysW 23393 24238 + sulfate ABC transporter%2C permease protein CysW identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02140 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0253 TREPR_0254 TREPR_0254 cysT cysT 22551 23396 + sulfate ABC transporter%2C permease protein CysT identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02139 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0254 TREPR_0255 TREPR_0255 TREPR_0255 21474 22541 + sulfate-binding protein (Sulfate starvation-induced protein2) (SSI2) identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00971 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0255 TREPR_0256 TREPR_0256 TREPR_0256 20160 21362 + threonine synthase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0256 TREPR_0257 TREPR_0257 thiS thiS 19857 20129 - thiamine biosynthesis protein ThiS identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0257 TREPR_0258 TREPR_0258 TREPR_0258 19459 19863 - Mov34/MPN/PAD-1 identified by match to protein family HMM PF01398 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0258 TREPR_0259 TREPR_0259 TREPR_0259 18879 19457 - siroheme synthase identified by match to protein family HMM TIGR01470 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0259 TREPR_0260 TREPR_0260 hemC hemC 17881 18882 - hydroxymethylbilane synthase identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0260 TREPR_0261 TREPR_0261 TREPR_0261 16304 17884 - uroporphyrinogen-III synthase/methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM PF02602%3B match to protein family HMM TIGR01469 gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0261 TREPR_0262 TREPR_0262 hemB hemB 15317 16303 - porphobilinogen synthase identified by match to protein family HMM PF00490 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0262 TREPR_0263 TREPR_0263 TREPR_0263 13765 15291 + MscS Mechanosensitive ion channel identified by match to protein family HMM PF00924 gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0263 TREPR_0264 TREPR_0264 TREPR_0264 12439 13743 + threonine synthase identified by match to protein family HMM PF00291 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0264 TREPR_0265 TREPR_0265 TREPR_0265 11325 12350 - putative transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0265 TREPR_0266 TREPR_0266 TREPR_0266 10349 11290 + periplasmic sugar-binding protein identified by match to protein family HMM PF00532 gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0266 TREPR_0267 TREPR_0267 TREPR_0267 9328 10293 + ribose transport system permease protein RbsC identified by match to protein family HMM PF02653 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0267 TREPR_0268 TREPR_0268 TREPR_0268 7765 9312 + ribose import ATP-binding protein RbsA identified by match to protein family HMM PF00005 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0268 TREPR_0270 TREPR_0270 TREPR_0270 6801 7661 - RNA methyltransferase superfamily identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0270 TREPR_0271 TREPR_0271 TREPR_0271 6003 6791 - conserved hypothetical protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0271 TREPR_0272 TREPR_0272 TREPR_0272 4753 5961 + hypothetical protein identified by glimmer%3B putative gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0272 TREPR_0273 TREPR_0273 TREPR_0273 4171 4749 + hypothetical protein identified by glimmer%3B putative gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0273 TREPR_0274 TREPR_0274 TREPR_0274 3065 4174 + RecF protein identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0274 TREPR_0275 TREPR_0275 dnaN dnaN 1938 3041 + DNA polymerase III%2C beta subunit identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0275 TREPR_0276 TREPR_0276 TREPR_0276 1755 1925 + hypothetical protein identified by glimmer%3B putative gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0276 TREPR_0277 TREPR_0277 dnaA dnaA 301 1740 + chromosomal replication initiator protein DnaA identified by match to protein family HMM PF00308%3B match to protein family HMM PF08299%3B match to protein family HMM TIGR00362 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0277 TREPR_0279 TREPR_0279 gyrB gyrB 4057920 4059827 - DNA gyrase%2C B subunit identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0279 TREPR_0280 TREPR_0280 TREPR_0280 4056213 4057883 - multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0280 TREPR_0281 TREPR_0281 TREPR_0281 4055144 4056181 - putative signaling protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0281 TREPR_0282 TREPR_0282 gyrA_2 gyrA_2 4052428 4054974 - DNA gyrase%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0282 TREPR_0283 TREPR_0283 TREPR_0283 4051400 4052428 - putative iron ABC transporter%2C solute-binding lipoprotein identified by match to protein family HMM PF01547 gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0283 TREPR_0284 TREPR_0284 TREPR_0284 4050623 4051387 - sulfate/thiosulfate import ATP-binding protein CysA 2 (Sulfate-transporting ATPase 2) identified by match to protein family HMM PF00005 gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0284 TREPR_0285 TREPR_0285 TREPR_0285 4049052 4050626 - putative ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0285 TREPR_0286 TREPR_0286 TREPR_0286 4048495 4048989 - putative lipoprotein gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0286 TREPR_0287 TREPR_0287 TREPR_0287 4047976 4048449 - hypothetical protein identified by glimmer%3B putative gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0287 TREPR_0288 TREPR_0288 TREPR_0288 4047438 4047935 - YbaK/prolyl-tRNA synthetase associated region identified by match to protein family HMM PF04073 gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0288 TREPR_0289 TREPR_0289 TREPR_0289 4046655 4047419 - 2-dehydro-3-deoxyglucarate aldolase identified by match to protein family HMM PF03328 gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0289 TREPR_0290 TREPR_0290 TREPR_0290 4046151 4046573 + conserved hypothetical protein identified by match to protein family HMM TIGR02436 gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0290 TREPR_0291 TREPR_0291 TREPR_0291 4045252 4046133 + RNA methyltransferase%2C TrmH family identified by match to protein family HMM PF00588 gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0291 TREPR_0292 TREPR_0292 TREPR_0292 4044936 4045220 + conserved hypothetical protein gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0292 TREPR_0293 TREPR_0293 TREPR_0293 4044147 4044893 + conserved hypothetical protein identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096 gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0293 TREPR_0294 TREPR_0294 TREPR_0294 4043699 4044130 - conserved hypothetical protein gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0294 TREPR_0295 TREPR_0295 TREPR_0295 4042586 4043659 - putative aminopeptidase gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0295 TREPR_0296 TREPR_0296 TREPR_0296 4041436 4042458 - flagellar filament 34.5 kDa core protein (Class B) identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0296 TREPR_0298 TREPR_0298 TREPR_0298 4039029 4041224 + adenylate/guanylate cyclase catalytic domain protein identified by match to protein family HMM PF00211%3B match to protein family HMM PF05226 gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0298 TREPR_0299 TREPR_0299 TREPR_0299 4038002 4038922 + peptidase%2C M48 family identified by match to protein family HMM PF01435 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0299 TREPR_0300 TREPR_0300 TREPR_0300 4037527 4037997 + conserved hypothetical protein gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0300 TREPR_0301 TREPR_0301 TREPR_0301 4036719 4037444 + RNA methyltransferase%2C TrmH family%2C group 3 identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0301 TREPR_0302 TREPR_0302 TREPR_0302 4035496 4036701 + aldo/keto reductase identified by match to protein family HMM PF00248 gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0302 TREPR_0303 TREPR_0303 TREPR_0303 4034047 4035480 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521 gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0303 TREPR_0304 TREPR_0304 TREPR_0304 4033181 4034014 + conserved hypothetical protein gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0304 TREPR_0305 TREPR_0305 TREPR_0305 4032379 4033197 + ferredoxin identified by match to protein family HMM PF00037%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR01944 gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0305 TREPR_0306 TREPR_0306 TREPR_0306 4031770 4032366 + Na+-translocating NADH-quinone reductase%2C E subunit identified by match to protein family HMM PF02508 gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0306 TREPR_0307 TREPR_0307 TREPR_0307 4031165 4031773 + na(+)-translocating NADH-quinone reductase subunit d (na(+)-translocating nqr subunit d) (na(+)-nqr subunit d) (nqr complexsubunit d) (nqr-1 subunit d) identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01948 gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0307 TREPR_0308 TREPR_0308 TREPR_0308 4030557 4031168 + electron transport complex%2C rnfabcdGe type%2C g subunit identified by match to protein family HMM PF04205 gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0308 TREPR_0309 TREPR_0309 TREPR_0309 4029508 4030560 + RnfD identified by match to protein family HMM PF03116%3B match to protein family HMM TIGR01946 gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0309 TREPR_0310 TREPR_0310 TREPR_0310 4028093 4029496 + electron transport complex protein RnfC identified by match to protein family HMM PF01512%3B match to protein family HMM TIGR01945 gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0310 TREPR_0311 TREPR_0311 dnaJ dnaJ 4026762 4027886 + chaperone protein DnaJ identified by match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349 gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0311 TREPR_0312 TREPR_0312 dnaK dnaK 4024761 4026704 + chaperone protein DnaK identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0312 TREPR_0313 TREPR_0313 grpE grpE 4024036 4024719 + co-chaperone GrpE identified by match to protein family HMM PF01025 gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0313 TREPR_0314 TREPR_0314 TREPR_0314 4023121 4023918 + undecaprenyl-diphosphatase identified by match to protein family HMM PF02673 gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0314 TREPR_0315 TREPR_0315 TREPR_0315 4022365 4022778 - VanZ family protein identified by match to protein family HMM PF04892 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0315 TREPR_0316 TREPR_0316 TREPR_0316 4022081 4022368 - DNA polymerase%2C beta domain protein region identified by match to protein family HMM PF01909 gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0316 TREPR_0317 TREPR_0317 TREPR_0317 4021636 4022088 - conserved hypothetical protein gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0317 TREPR_0318 TREPR_0318 TREPR_0318 4020348 4021559 - ATPase gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0318 TREPR_0319 TREPR_0319 TREPR_0319 4019954 4020184 - conserved hypothetical protein gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0319 TREPR_0320 TREPR_0320 TREPR_0320 4019556 4019957 - PIN domain protein gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0320 TREPR_0321 TREPR_0321 TREPR_0321 4018630 4019508 + conserved hypothetical protein identified by match to protein family HMM PF08843 gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0321 TREPR_0322 TREPR_0322 TREPR_0322 4017950 4018633 + conserved hypothetical protein gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0322 TREPR_0323 TREPR_0323 TREPR_0323 4017616 4017840 - putative virulence protein gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0323 TREPR_0324 TREPR_0324 TREPR_0324 4017216 4017653 - virulence associated protein C identified by match to protein family HMM PF01850 gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0324 TREPR_0327 TREPR_0327 wxcM_2 wxcM_2 4016395 4016793 - bifunctional acetyl transferase/isomerase identified by match to protein family HMM PF05523%3B overlaps another CDS with the same product name gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0327 TREPR_0328 TREPR_0328 wxcM_1 wxcM_1 4015961 4016398 - bifunctional acetyl transferase/isomerase identified by match to protein family HMM PF05523%3B overlaps another CDS with the same product name gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0328 TREPR_0329 TREPR_0329 TREPR_0329 4015438 4015665 - methyltransferase type 12%3B this region contains one or more premature stops and/or frameshifts pseudogene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0329 TREPR_0330 TREPR_0330 TREPR_0330 4015095 4015358 - methyltransferase type 12%3B this region contains one or more premature stops and/or frameshifts pseudogene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0330 TREPR_0331 TREPR_0331 TREPR_0331 4013967 4015037 - hypothetical protein identified by glimmer%3B putative gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0331 TREPR_0332 TREPR_0332 TREPR_0332 4012888 4013970 - putative acyltransferase identified by match to protein family HMM PF01757 gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0332 TREPR_0333 TREPR_0333 TREPR_0333 4011924 4012799 - putative NAD-binding domain 4 protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0333 TREPR_0334 TREPR_0334 TREPR_0334 4011042 4011878 - transketolase identified by match to protein family HMM PF00456 gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0334 TREPR_0335 TREPR_0335 TREPR_0335 4010104 4011045 - 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0335 TREPR_0336 TREPR_0336 TREPR_0336 4009428 4010048 - pyrophosphatase PpaX gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0336 TREPR_0337 TREPR_0337 TREPR_0337 4008271 4009371 - aminotransferase%2C DegT/DnrJ/EryC1/StrS family identified by match to protein family HMM PF01041 gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0337 TREPR_0338 TREPR_0338 TREPR_0338 4006967 4008277 - lipopolysaccharide biosynthesis protein identified by match to protein family HMM PF01943 gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0338 TREPR_0339 TREPR_0339 TREPR_0339 4005806 4006873 - putative glycosyltransferase gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0339 TREPR_0340 TREPR_0340 asnB asnB 4003891 4005780 - asparagine synthase (glutamine-hydrolyzing) identified by match to protein family HMM PF00310%3B match to protein family HMM PF00733%3B match to protein family HMM TIGR01536 gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0340 TREPR_0341 TREPR_0341 TREPR_0341 4002649 4003821 - putative membrane protein gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0341 TREPR_0342 TREPR_0342 TREPR_0342 4001549 4002652 - capsular polysaccharide biosynthesis protein identified by match to protein family HMM PF00534 gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0342 TREPR_0343 TREPR_0343 TREPR_0343 4000476 4001561 - putative lipopolysaccharide biosynthesis identified by match to protein family HMM PF00534 gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0343 TREPR_0344 TREPR_0344 TREPR_0344 3999489 4000460 - VI polysaccharide biosynthesis protein VipB/tviC identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993 gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0344 TREPR_0345 TREPR_0345 TREPR_0345 3998217 3999482 - VI polysaccharide biosynthesis protein VipA/tviB identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0345 TREPR_0346 TREPR_0346 TREPR_0346 3997086 3997265 + hypothetical protein identified by glimmer%3B putative gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0346 TREPR_0347 TREPR_0347 TREPR_0347 3997223 3998230 - conserved hypothetical protein gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0347 TREPR_0348 TREPR_0348 TREPR_0348 3995669 3996955 - conserved hypothetical protein gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0348 TREPR_0349 TREPR_0349 TREPR_0349 3994599 3995648 - conserved hypothetical protein gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0349 TREPR_0350 TREPR_0350 TREPR_0350 3994232 3994606 - alpha-D-QuiNAc alpha-1%2C3-galactosyltransferase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0350 TREPR_0351 TREPR_0351 TREPR_0351 3993487 3994239 - glycosyltransferase%2C group 1 family%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00534 pseudogene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0351 TREPR_0352 TREPR_0352 TREPR_0352 3992570 3993331 - UDP-glucose 4-epimerase gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0352 TREPR_0353 TREPR_0353 TREPR_0353 3991908 3992573 - undecaprenyl- phosphate galactosephosphotransferase identified by match to protein family HMM PF02397 gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0353 TREPR_0354 TREPR_0354 TREPR_0354 3990706 3991896 - polysaccharide biosynthesis protein CapD identified by match to protein family HMM PF02719 gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0354 TREPR_0355 TREPR_0355 TREPR_0355 3989687 3990694 - chain length determinant protein identified by match to protein family HMM PF02706 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0355 TREPR_0356 TREPR_0356 TREPR_0356 3988224 3989690 - hypothetical protein identified by glimmer%3B putative gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0356 TREPR_0357 TREPR_0357 TREPR_0357 3986573 3988132 - membrane bOund o-acyl transferase%2C mboat identified by match to protein family HMM PF03062 gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0357 TREPR_0358 TREPR_0358 TREPR_0358 3985646 3986557 - hypothetical protein identified by glimmer%3B putative gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0358 TREPR_0360 TREPR_0360 TREPR_0360 3984476 3984658 - ATPase%3B this region contains one or more premature stops and/or frameshifts pseudogene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0360 TREPR_0361 TREPR_0361 TREPR_0361 3984083 3984316 - hypothetical protein identified by glimmer%3B putative gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0361 TREPR_0362 TREPR_0362 TREPR_0362 3983896 3984105 - hypothetical protein identified by glimmer%3B putative gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0362 TREPR_0363 TREPR_0363 TREPR_0363 3983611 3983802 + hypothetical protein identified by glimmer%3B putative gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0363 TREPR_0365 TREPR_0365 TREPR_0365 3983313 3983441 - hypothetical protein identified by glimmer%3B putative gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0365 TREPR_0366 TREPR_0366 TREPR_0366 3981729 3983252 - polysaccharide biosynthesis/export protein identified by match to protein family HMM PF02563 gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0366 TREPR_0367 TREPR_0367 TREPR_0367 3980496 3981674 + D-alanine--D-alanine ligase identified by match to protein family HMM PF01820%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205 gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0367 TREPR_0368 TREPR_0368 TREPR_0368 3978926 3980482 + UDP-N-acetylmuramyl pentapeptide synthase identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245 gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0368 TREPR_0369 TREPR_0369 TREPR_0369 3978156 3978929 + alpha/beta hydrolase family protein identified by match to protein family HMM PF00561 gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0369 TREPR_0370 TREPR_0370 TREPR_0370 3977524 3978102 + nitroreductase family protein identified by match to protein family HMM PF00881 gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0370 TREPR_0371 TREPR_0371 TREPR_0371 3974573 3977449 + putative peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0371 TREPR_0372 TREPR_0372 TREPR_0372 3973908 3974501 - DNA-3-methyladenine glycosylase 1 identified by match to protein family HMM PF03352 gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0372 TREPR_0373 TREPR_0373 metA metA 3972941 3973858 - homoserine O-succinyltransferase identified by match to protein family HMM PF04204%3B match to protein family HMM TIGR01001 gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0373 TREPR_0374 TREPR_0374 TREPR_0374 3972078 3972680 - hdig domain protein identified by match to protein family HMM TIGR00277 gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0374 TREPR_0375 TREPR_0375 trmU trmU 3970981 3972081 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase identified by match to protein family HMM PF03054%3B match to protein family HMM TIGR00420 gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0375 TREPR_0376 TREPR_0376 TREPR_0376 3969119 3970966 + hypothetical protein%3B this region contains one or more premature stops and/or frameshifts%3Bidentified by glimmer%3B putative pseudogene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0376 TREPR_0377 TREPR_0377 TREPR_0377 3967572 3969032 - putative lipoprotein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0377 TREPR_0378 TREPR_0378 TREPR_0378 3966512 3967570 - DHH superfamily protein%2C subfamily 1 identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272 gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0378 TREPR_0379 TREPR_0379 TREPR_0379 3965337 3966515 - TraB family protein identified by match to protein family HMM PF01963%3B match to protein family HMM TIGR00261 gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0379 TREPR_0380 TREPR_0380 TREPR_0380 3963692 3965275 - heavy metal transport/detoxification protein identified by match to protein family HMM PF00403 gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0380 TREPR_0381 TREPR_0381 TREPR_0381 3963024 3963584 - conserved hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0381 TREPR_0382 TREPR_0382 TREPR_0382 3961274 3962782 - anthranilate synthase component 1 (Anthranilate synthasecomponent I) identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715 gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0382 TREPR_0383 TREPR_0383 TREPR_0383 3960702 3961277 - para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0383 TREPR_0384 TREPR_0384 trpD trpD 3959654 3960709 - anthranilate phosphoribosyltransferase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0384 TREPR_0385 TREPR_0385 trpC trpC 3958764 3959657 - indole-3-glycerol phosphate synthase identified by match to protein family HMM PF00218 gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0385 TREPR_0386 TREPR_0386 trpF trpF 3958024 3958767 - N-(5'phosphoribosyl)anthranilate isomerase%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00697 pseudogene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0386 TREPR_0387 TREPR_0387 trpB trpB 3956819 3958027 - tryptophan synthase%2C beta subunit identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263 gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0387 TREPR_0388 TREPR_0388 trpA trpA 3956029 3956826 - tryptophan synthase%2C alpha subunit identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262 gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0388 TREPR_0390 TREPR_0390 TREPR_0390 3954377 3955813 - Fe-hydrogenase large subunit family protein identified by match to protein family HMM PF00037%3B match to protein family HMM PF02906 gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0390 TREPR_0391 TREPR_0391 TREPR_0391 3952982 3954304 + general glycosylation pathway protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0391 TREPR_0392 TREPR_0392 TREPR_0392 3952556 3952969 + histidine triad gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0392 TREPR_0393 TREPR_0393 TREPR_0393 3950983 3952437 + malate dehydrogenase (oxaloacetate-decarboxylating) identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949 gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0393 TREPR_0394 TREPR_0394 TREPR_0394 3949900 3950928 + glyceraldehyde-3-phosphate dehydrogenase%2C type II identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01546 gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0394 TREPR_0395 TREPR_0395 pgk_2 pgk_2 3948580 3949836 + phosphoglycerate kinase identified by match to protein family HMM PF00162 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0395 TREPR_0396 TREPR_0396 TREPR_0396 3947102 3948577 + Myo-inositol catabolism protein IolE identified by match to protein family HMM PF01261 gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0396 TREPR_0397 TREPR_0397 TREPR_0397 3945215 3947092 + probable malonic semialdehyde oxidative decarboxylase identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776 gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0397 TREPR_0398 TREPR_0398 TREPR_0398 3944379 3945188 + myo-inositol catabolism protein identified by match to protein family HMM PF06845 gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0398 TREPR_0399 TREPR_0399 TREPR_0399 3943224 3944354 + inositol 2-dehydrogenase identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0399 TREPR_0400 TREPR_0400 TREPR_0400 3942120 3942986 - xylose isomerase domain protein TIM barrel identified by match to protein family HMM PF01261 gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0400 TREPR_0401 TREPR_0401 TREPR_0401 3941116 3942111 - alanine racemase identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0401 TREPR_0402 TREPR_0402 TREPR_0402 3939445 3940965 - ribose import ATP-binding protein RbsA identified by match to protein family HMM PF00005 gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0402 TREPR_0403 TREPR_0403 TREPR_0403 3938400 3939401 - ribose transport system permease protein RbsC identified by match to protein family HMM PF02653 gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0403 TREPR_0404 TREPR_0404 TREPR_0404 3937374 3938363 - D-ribose-binding periplasmic protein identified by match to protein family HMM PF00532 gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0404 TREPR_0405 TREPR_0405 TREPR_0405 3936262 3937290 - catabolite control protein identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0405 TREPR_0406 TREPR_0406 TREPR_0406 3935280 3936107 - transketolase identified by match to protein family HMM PF00456 gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0406 TREPR_0407 TREPR_0407 TREPR_0407 3934326 3935276 - 1-deoxy-d-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (dxp synthase) (dxps) identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0407 TREPR_0408 TREPR_0408 TREPR_0408 3933209 3934222 - inositol 2-dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894%3B match to protein family HMM PF03447 gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0408 TREPR_0409 TREPR_0409 TREPR_0409 3932529 3933041 + SEC-C domain protein identified by match to protein family HMM PF02810 gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0409 TREPR_0410 TREPR_0410 TREPR_0410 3929114 3932410 - putative helicase%2C SNF2/RAD54 family identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0410 TREPR_0411 TREPR_0411 TREPR_0411 3925412 3929110 - DNA modification methylase gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0411 TREPR_0412 TREPR_0412 TREPR_0412 3922225 3925368 - conserved hypothetical protein gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0412 TREPR_0413 TREPR_0413 TREPR_0413 3921960 3922103 - hypothetical protein identified by glimmer%3B putative gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0413 TREPR_0414 TREPR_0414 TREPR_0414 3921484 3921963 - conserved hypothetical protein gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0414 TREPR_0415 TREPR_0415 TREPR_0415 3921264 3921494 - conserved hypothetical protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0415 TREPR_0416 TREPR_0416 TREPR_0416 3920807 3921250 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0416 TREPR_0417 TREPR_0417 TREPR_0417 3919790 3920758 + NADH:flavin oxidoreductase/nadh oxidase identified by match to protein family HMM PF00724 gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0417 TREPR_0418 TREPR_0418 TREPR_0418 3918847 3919647 + serine/threonine kinase identified by match to protein family HMM PF03781 gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0418 TREPR_0419 TREPR_0419 TREPR_0419 3918046 3918837 + PAP2 superfamily protein identified by match to protein family HMM PF01569 gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0419 TREPR_0421 TREPR_0421 thrC thrC 3916669 3918033 + threonine synthase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0421 TREPR_0422 TREPR_0422 TREPR_0422 3915533 3916645 + alcohol dehydrogenase%2C iron-dependent identified by match to protein family HMM PF00465 gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0422 TREPR_0423 TREPR_0423 TREPR_0423 3914189 3915511 + adenosylmethionine--8-amino-7-oxononanoate transaminase identified by match to protein family HMM PF00202 gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0423 TREPR_0424 TREPR_0424 TREPR_0424 3912947 3914170 + N-carbamyl-L-cysteine amidohydrolase identified by match to protein family HMM PF01546%3B match to protein family HMM TIGR01879 gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0424 TREPR_0425 TREPR_0425 TREPR_0425 3911434 3912936 + dihydroorotate oxidase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01180%3B match to protein family HMM TIGR01037 gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0425 TREPR_0426 TREPR_0426 hydA hydA 3910056 3911432 + dihydropyrimidinase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR02033 gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0426 TREPR_0427 TREPR_0427 TREPR_0427 3908904 3909986 + NMT1/THI5 domain protein identified by match to protein family HMM PF09084 gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0427 TREPR_0428 TREPR_0428 TREPR_0428 3908048 3908836 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0428 TREPR_0429 TREPR_0429 TREPR_0429 3907197 3908051 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0429 TREPR_0430 TREPR_0430 TREPR_0430 3906393 3907196 + taurine import ATP-binding protein TauB identified by match to protein family HMM PF00005 gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0430 TREPR_0432 TREPR_0432 TREPR_0432 3904910 3906109 - extracellular ligand-binding receptor identified by match to protein family HMM PF01094 gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0432 TREPR_0433 TREPR_0433 TREPR_0433 3903878 3904789 - inner-membrane translocator identified by match to protein family HMM PF02653 gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0433 TREPR_0434 TREPR_0434 TREPR_0434 3902795 3903868 - high-affinity branched chain amino acid ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0434 TREPR_0435 TREPR_0435 TREPR_0435 3902047 3902817 - high affinity branched-chain amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0435 TREPR_0436 TREPR_0436 TREPR_0436 3901281 3902021 - high-affinity branched-chain amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0436 TREPR_0437 TREPR_0437 TREPR_0437 3900639 3901172 - nitroreductase identified by match to protein family HMM PF00881 gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0437 TREPR_0438 TREPR_0438 TREPR_0438 3900273 3900569 - hypothetical protein identified by glimmer%3B putative gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0438 TREPR_0439 TREPR_0439 TREPR_0439 3899878 3900276 - hypothetical protein identified by glimmer%3B putative gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0439 TREPR_0440 TREPR_0440 TREPR_0440 3899044 3899769 - branched-chain amino acid transport ATP-binding protein LivG identified by match to protein family HMM PF00005 gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0440 TREPR_0441 TREPR_0441 TREPR_0441 3898341 3899060 - high affinity branched-chain amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0441 TREPR_0442 TREPR_0442 TREPR_0442 3897410 3898339 - putative inner-membrane translocator identified by match to protein family HMM PF02653 gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0442 TREPR_0443 TREPR_0443 TREPR_0443 3896493 3897401 - putative inner-membrane translocator identified by match to protein family HMM PF02653 gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0443 TREPR_0444 TREPR_0444 TREPR_0444 3895282 3896496 - receptor family ligand-binding protein identified by match to protein family HMM PF01094 gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0444 TREPR_0446 TREPR_0446 TREPR_0446 3893537 3895147 - fatty acyl-CoA hydrolase %2C medium chain (Thioesterase B) identified by match to protein family HMM PF00135 gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0446 TREPR_0447 TREPR_0447 TREPR_0447 3890787 3892751 - DNA polymerase III%2C gamma and tau subunit identified by match to protein family HMM PF00004%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02397 gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0447 TREPR_0448 TREPR_0448 TREPR_0448 3890432 3890797 - conserved hypothetical protein identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103 gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0448 TREPR_0449 TREPR_0449 recR recR 3889824 3890435 - recombination protein RecR identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615 gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0449 TREPR_0450 TREPR_0450 TREPR_0450 3888700 3889770 - peptidyl-prolyl cis-trans isomerase identified by match to protein family HMM PF00160%3B match to protein family HMM PF00254 gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0450 TREPR_0451 TREPR_0451 TREPR_0451 3888013 3888687 + transcriptional regulatory protein DegU identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0451 TREPR_0452 TREPR_0452 TREPR_0452 3886999 3887835 - hydrolase%2C TatD family identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0452 TREPR_0453 TREPR_0453 TREPR_0453 3886021 3886998 - tRNA-dihydrouridine synthase identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00737 gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0453 TREPR_0454 TREPR_0454 TREPR_0454 3884898 3885956 - diguanylate cyclase (GGDEF) domain protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0454 TREPR_0455 TREPR_0455 TREPR_0455 3884256 3884885 - rhomboid family protein identified by match to protein family HMM PF01694 gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0455 TREPR_0456 TREPR_0456 TREPR_0456 3882792 3884171 - conserved hypothetical protein identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01415 gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0456 TREPR_0457 TREPR_0457 TREPR_0457 3882409 3882678 + conserved hypothetical protein gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0457 TREPR_0458 TREPR_0458 TREPR_0458 3882029 3882406 + conserved hypothetical protein gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0458 TREPR_0459 TREPR_0459 TREPR_0459 3881265 3881951 - hypothetical protein identified by glimmer%3B putative gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0459 TREPR_0460 TREPR_0460 TREPR_0460 3879405 3881126 - phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) identified by match to protein family HMM PF01409%3B match to protein family HMM TIGR00468 gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0460 TREPR_0461 TREPR_0461 dsdA dsdA 3878007 3879362 - D-serine ammonia-lyase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR02035 gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0461 TREPR_0462 TREPR_0462 TREPR_0462 3877077 3877883 - lipolytic enzyme%2C GDSL domain protein identified by match to protein family HMM PF00657 gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0462 TREPR_0463 TREPR_0463 ptsP_4 ptsP_4 3875335 3876948 + phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0463 TREPR_0464 TREPR_0464 TREPR_0464 3875067 3875333 + phosphocarrier protein HPr identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0464 TREPR_0465 TREPR_0465 TREPR_0465 3872251 3875004 + sigma-54 factor interaction domain protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF00874%3B match to protein family HMM PF07728 gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0465 TREPR_0466 TREPR_0466 TREPR_0466 3871746 3872075 - lichenan-specific phosphotransferase enzyme iia component identified by match to protein family HMM PF02255 gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0466 TREPR_0467 TREPR_0467 TREPR_0467 3871453 3871749 - lichenan-specific phosphotransferase enzyme iib component (pts system lichenan-specific eiib component) (eiib-lic) identified by match to protein family HMM PF02302 gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0467 TREPR_0468 TREPR_0468 TREPR_0468 3870191 3871429 - PTS system%2C IIc component identified by match to protein family HMM PF02378%3B match to protein family HMM TIGR00410 gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0468 TREPR_0469 TREPR_0469 TREPR_0469 3869350 3870189 - protein-tyrosine phosphatase gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0469 TREPR_0470 TREPR_0470 TREPR_0470 3867885 3869324 - beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) identified by match to protein family HMM PF00232 gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0470 TREPR_0471 TREPR_0471 TREPR_0471 3867157 3867873 - conserved hypothetical protein identified by match to protein family HMM PF01182 gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0471 TREPR_0472 TREPR_0472 TREPR_0472 3864168 3867005 + anaerobic dimethylsulfoxide reductase%2C A subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR02166 gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0472 TREPR_0473 TREPR_0473 TREPR_0473 3862966 3864156 + putative Xaa-Pro aminopeptidase identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321 gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0473 TREPR_0474 TREPR_0474 TREPR_0474 3861899 3862948 + putative acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase subfamily identified by match to protein family HMM PF03417 gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0474 TREPR_0475 TREPR_0475 TREPR_0475 3860892 3861875 + putative uroporphyrinogen decarboxylase gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0475 TREPR_0476 TREPR_0476 TREPR_0476 3860069 3860899 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005 gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0476 TREPR_0477 TREPR_0477 TREPR_0477 3859074 3860072 + dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0477 TREPR_0478 TREPR_0478 TREPR_0478 3858223 3859062 + oligopeptide transport system permease protein AppC identified by match to protein family HMM PF00528 gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0478 TREPR_0479 TREPR_0479 TREPR_0479 3857304 3858221 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0479 TREPR_0480 TREPR_0480 TREPR_0480 3855803 3857287 + extracellular solute-binding protein%2C family 5 identified by match to protein family HMM PF00496 gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0480 TREPR_0482 TREPR_0482 TREPR_0482 3855376 3855495 + hypothetical protein identified by glimmer%3B putative gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0482 TREPR_0483 TREPR_0483 pheT pheT 3853525 3855282 - phenylalanyl-tRNA synthetase%2C beta subunit identified by match to protein family HMM PF03484%3B match to protein family HMM TIGR00471 gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0483 TREPR_0484 TREPR_0484 TREPR_0484 3852824 3853507 + Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300 gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0484 TREPR_0485 TREPR_0485 TREPR_0485 3850095 3851981 + cytoplasm protein gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0485 TREPR_0486 TREPR_0486 TREPR_0486 3851945 3852673 - transglycosylase SLT domain protein identified by match to protein family HMM PF01464 gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0486 TREPR_0487 TREPR_0487 TREPR_0487 3849138 3849962 - hypothetical protein identified by glimmer%3B putative gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0487 TREPR_0488 TREPR_0488 TREPR_0488 3847892 3849109 - hypothetical protein identified by glimmer%3B putative gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0488 TREPR_0489 TREPR_0489 TREPR_0489 3847339 3847791 + PTS system%2C IIA component identified by match to protein family HMM PF00359 gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0489 TREPR_0490 TREPR_0490 corA corA 3846170 3847243 - magnesium and cobalt transport protein CorA identified by match to protein family HMM PF01544%3B match to protein family HMM TIGR00383 gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0490 TREPR_0491 TREPR_0491 TREPR_0491 3845071 3846159 - Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM PF03481%3B match to protein family HMM TIGR00057 gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0491 TREPR_0492 TREPR_0492 TREPR_0492 3843792 3844985 + integral inner membrane protein identified by match to protein family HMM PF01594 gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0492 TREPR_0493 TREPR_0493 TREPR_0493 3841427 3843610 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0493 TREPR_0494 TREPR_0494 TREPR_0494 3839225 3841393 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0494 TREPR_0495 TREPR_0495 TREPR_0495 3836808 3838976 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0495 TREPR_0496 TREPR_0496 TREPR_0496 3835964 3836737 + type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0496 TREPR_0497 TREPR_0497 TREPR_0497 3835197 3835793 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0497 TREPR_0498 TREPR_0498 TREPR_0498 3833951 3835174 + N6-adenine-specific DNA methylase identified by match to protein family HMM PF01170 gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0498 TREPR_0499 TREPR_0499 TREPR_0499 3832925 3833911 + methyltransferase gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0499 TREPR_0501 TREPR_0501 TREPR_0501 3830809 3832380 + ATPase gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0501 TREPR_0502 TREPR_0502 TREPR_0502 3829894 3830634 + spoiiij-associated protein identified by match to protein family HMM PF01424 gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0502 TREPR_0503 TREPR_0503 TREPR_0503 3828031 3829833 + inner membrane protein OxaA identified by match to protein family HMM PF02096%3B match to protein family HMM TIGR03592%3B match to protein family HMM TIGR03593 gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0503 TREPR_0504 TREPR_0504 TREPR_0504 3827773 3827991 + conserved hypothetical protein identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278 gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0504 TREPR_0505 TREPR_0505 rnpA rnpA 3827369 3827773 + ribonuclease P protein component identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188 gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0505 TREPR_0506 TREPR_0506 rpmH rpmH 3827190 3827345 + ribosomal protein L34 identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030 gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0506 TREPR_0508 TREPR_0508 TREPR_0508 3824729 3826816 + hypothetical protein identified by glimmer%3B putative gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0508 TREPR_0509 TREPR_0509 TREPR_0509 3823691 3824722 + hypothetical protein identified by glimmer%3B putative gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0509 TREPR_0510 TREPR_0510 nrdD nrdD 3821172 3823499 - anaerobic ribonucleoside-triphosphate reductase identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR02487 gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0510 TREPR_0511 TREPR_0511 nrdG nrdG 3820568 3821197 - anaerobic ribonucleoside-triphosphate reductase activating protein identified by match to protein family HMM TIGR02491 gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0511 TREPR_0512 TREPR_0512 TREPR_0512 3819927 3820472 - uncharacterized conserved protein identified by match to protein family HMM PF02677 gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0512 TREPR_0513 TREPR_0513 TREPR_0513 3819053 3819937 - NAD-dependent deacetylase identified by match to protein family HMM PF02146 gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0513 TREPR_0514 TREPR_0514 TREPR_0514 3817849 3818976 + conserved hypothetical protein gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0514 TREPR_0515 TREPR_0515 TREPR_0515 3816239 3817198 + periplasmic binding protein identified by match to protein family HMM PF01497 gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0515 TREPR_0516 TREPR_0516 TREPR_0516 3815334 3816242 + sirohydrochlorin cobaltochelatase identified by match to protein family HMM PF01903%3B match to protein family HMM PF06180 gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0516 TREPR_0518 TREPR_0518 TREPR_0518 3812807 3814774 - putative outer membrane protein identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0518 TREPR_0519 TREPR_0519 TREPR_0519 3812121 3812810 - putative TonB-dependent receptor identified by match to protein family HMM TIGR01352 gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0519 TREPR_0520 TREPR_0520 cbiD cbiD 3810912 3812117 - cobalamin biosynthesis protein CbiD identified by match to protein family HMM PF01888%3B match to protein family HMM TIGR00312 gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0520 TREPR_0521 TREPR_0521 cobM cobM 3810163 3810915 - precorrin-4 C(11)-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01465 gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0521 TREPR_0522 TREPR_0522 TREPR_0522 3809375 3810166 - CbiG identified by match to protein family HMM PF01890 gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0522 TREPR_0523 TREPR_0523 cobJ cobJ 3808651 3809382 - precorrin-3B C(17)-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01466 gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0523 TREPR_0524 TREPR_0524 TREPR_0524 3807912 3808658 - precorrin-6x reductase CbiJ/CobK%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF02571 pseudogene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0524 TREPR_0525 TREPR_0525 TREPR_0525 3806656 3807915 - precorrin-6y C5%2C15-methyltransferase (decarboxylating) identified by match to protein family HMM PF00590%3B match to protein family HMM PF03602%3B match to protein family HMM TIGR02467%3B match to protein family HMM TIGR02469 gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0525 TREPR_0526 TREPR_0526 cobB_2 cobB_2 3805166 3806659 - cobyrinic Acid a%2Cc-diamide synthase identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00379 gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0526 TREPR_0527 TREPR_0527 cobD cobD 3804180 3805169 - cobalamin biosynthesis protein CobD identified by match to protein family HMM PF03186%3B match to protein family HMM TIGR00380 gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0527 TREPR_0528 TREPR_0528 TREPR_0528 3803164 3804219 - threonine-phosphate decarboxylase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01140 gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0528 TREPR_0529 TREPR_0529 cobQ_2 cobQ_2 3801705 3803180 - cobyric acid synthase CobQ identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00313 gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0529 TREPR_0530 TREPR_0530 TREPR_0530 3801205 3801708 - Cob(I)yrinic acid a%2Cc-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) identified by match to protein family HMM PF02572 gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0530 TREPR_0531 TREPR_0531 TREPR_0531 3800567 3801205 - cobalt-precorrin-8X methylmutase identified by match to protein family HMM PF02570 gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0531 TREPR_0532 TREPR_0532 TREPR_0532 3799488 3800570 - HmuU protein identified by match to protein family HMM PF01032 gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0532 TREPR_0533 TREPR_0533 TREPR_0533 3798679 3799491 - ferric enterobactin transport ATP-binding protein FepC identified by match to protein family HMM PF00005 gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0533 TREPR_0534 TREPR_0534 cobQ_1 cobQ_1 3797135 3798589 - cobyric acid synthase CobQ identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00313 gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0534 TREPR_0536 TREPR_0536 TREPR_0536 3796129 3796686 - hypothetical protein identified by glimmer%3B putative gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0536 TREPR_0537 TREPR_0537 TREPR_0537 3794074 3796101 - putative vitamin B12 transporter BtuB (Cobalamin receptor) (Outermembrane cobalamin translocator) identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0537 TREPR_0538 TREPR_0538 TREPR_0538 3793179 3794081 - periplasmic binding protein identified by match to protein family HMM PF01497 gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0538 TREPR_0539 TREPR_0539 TREPR_0539 3792179 3793192 - HmuU protein identified by match to protein family HMM PF01032 gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0539 TREPR_0540 TREPR_0540 TREPR_0540 3791360 3792169 - ferric enterobactin transport ATP-binding protein FepC identified by match to protein family HMM PF00005 gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0540 TREPR_0541 TREPR_0541 TREPR_0541 3789166 3791367 - nitrogen fixation protein NifH/NifE identified by match to protein family HMM PF00142%3B match to protein family HMM PF00148 gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0541 TREPR_0542 TREPR_0542 TREPR_0542 3787896 3789197 - oxidoreductase/nitrogenase%2C component 1 identified by match to protein family HMM PF00148 gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0542 TREPR_0543 TREPR_0543 TREPR_0543 3787352 3787882 - bifunctional adenosylcobalamin biosynthesis protein CobP identified by match to protein family HMM PF02283 gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0543 TREPR_0544 TREPR_0544 TREPR_0544 3786540 3787355 - hypothetical protein identified by glimmer%3B putative gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0544 TREPR_0545 TREPR_0545 cobT cobT 3785492 3786538 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase identified by match to protein family HMM PF02277%3B match to protein family HMM TIGR03160 gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0545 TREPR_0546 TREPR_0546 cobS cobS 3784647 3785495 - cobalamin-5-phosphate synthase identified by match to protein family HMM PF02654 gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0546 TREPR_0547 TREPR_0547 TREPR_0547 3779529 3782648 + putative AcrB family membrane transport protein identified by match to protein family HMM PF00873 gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0547 TREPR_0548 TREPR_0548 TREPR_0548 3782645 3784615 - TonB-dependent receptor plug domain protein identified by match to protein family HMM PF07715 gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0548 TREPR_0549 TREPR_0549 TREPR_0549 3778435 3779532 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0549 TREPR_0550 TREPR_0550 TREPR_0550 3776988 3778388 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0550 TREPR_0551 TREPR_0551 TREPR_0551 3775814 3776944 + 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein identified by match to protein family HMM PF00037 gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0551 TREPR_0552 TREPR_0552 TREPR_0552 3774960 3775745 + tributyrin esterase identified by match to protein family HMM PF00756 gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0552 TREPR_0553 TREPR_0553 glnS glnS 3773232 3774950 + glutamine--tRNA ligase identified by match to protein family HMM PF00749%3B match to protein family HMM PF03950%3B match to protein family HMM TIGR00440 gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0553 TREPR_0555 TREPR_0555 TREPR_0555 3770893 3772287 - putative lipoprotein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0555 TREPR_0556 TREPR_0556 TREPR_0556 3768778 3770886 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0556 TREPR_0557 TREPR_0557 TREPR_0557 3768338 3768670 + DNA-binding protein identified by match to protein family HMM PF01381 gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0557 TREPR_0558 TREPR_0558 TREPR_0558 3767280 3768047 - lipolytic enzyme%2C GDSL domain protein identified by match to protein family HMM PF00657 gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0558 TREPR_0559 TREPR_0559 TREPR_0559 3765949 3767010 + repeat protein identified by match to protein family HMM PF09479%3B match to protein family HMM TIGR02543 gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0559 TREPR_0560 TREPR_0560 galE galE 3764770 3765741 - UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0560 TREPR_0561 TREPR_0561 TREPR_0561 3763474 3764733 - succinyl-diaminopimelate desuccinylase identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01910 gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0561 TREPR_0562 TREPR_0562 TREPR_0562 3762728 3763336 + galactoside O-acetyltransferase identified by match to protein family HMM PF00132 gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0562 TREPR_0563 TREPR_0563 TREPR_0563 3762340 3762726 + hypothetical protein identified by glimmer%3B putative gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0563 TREPR_0565 TREPR_0565 TREPR_0565 3761177 3762130 - transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883 gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0565 TREPR_0566 TREPR_0566 TREPR_0566 3759958 3761019 - L-lysine 2%2C3-aminomutase (KAM) (LAM) identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00238 gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0566 TREPR_0567 TREPR_0567 TREPR_0567 3758573 3759751 - spermidine/putrescine import ATP-binding protein PotA identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187 gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0567 TREPR_0568 TREPR_0568 TREPR_0568 3757692 3758525 - spermidine/putrescine transport system permease protein PotB identified by match to protein family HMM PF00528 gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0568 TREPR_0569 TREPR_0569 TREPR_0569 3756829 3757695 - spermidine/putrescine transport system permease protein PotC identified by match to protein family HMM PF00528 gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0569 TREPR_0570 TREPR_0570 TREPR_0570 3755719 3756759 - spermidine/putrescine-binding periplasmic protein identified by match to protein family HMM PF01547 gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0570 TREPR_0571 TREPR_0571 TREPR_0571 3754840 3755685 + cell wall hydrolase/autolysin gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0571 TREPR_0572 TREPR_0572 TREPR_0572 3754062 3754808 + adenine nucleotide alpha hydrolase ATP-binding family protein identified by match to protein family HMM PF01171 gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0572 TREPR_0573 TREPR_0573 TREPR_0573 3753212 3754069 + ThiF family protein identified by match to protein family HMM PF00899 gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0573 TREPR_0574 TREPR_0574 TREPR_0574 3751806 3752531 + putative membrane protein identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697 gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0574 TREPR_0575 TREPR_0575 TREPR_0575 3752528 3753235 - hypothetical protein identified by glimmer%3B putative gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0575 TREPR_0576 TREPR_0576 TREPR_0576 3751484 3751720 - fic family protein gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0576 TREPR_0577 TREPR_0577 TREPR_0577 3749739 3751307 - GLUG domain protein identified by match to protein family HMM PF07581 gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0577 TREPR_0578 TREPR_0578 TREPR_0578 3749177 3749725 - hypothetical protein identified by glimmer%3B putative gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0578 TREPR_0579 TREPR_0579 TREPR_0579 3747897 3749174 - hypothetical protein identified by glimmer%3B putative gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0579 TREPR_0580 TREPR_0580 TREPR_0580 3747212 3747877 - conserved hypothetical protein gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0580 TREPR_0581 TREPR_0581 TREPR_0581 3745788 3747194 + periplasmic sensor signal transduction histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0581 TREPR_0582 TREPR_0582 TREPR_0582 3745063 3745791 + two component transcriptional regulator%2C winged helix family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0582 TREPR_0583 TREPR_0583 TREPR_0583 3744866 3745066 + putative heavy metal-binding protein identified by match to protein family HMM PF00403 gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0583 TREPR_0584 TREPR_0584 TREPR_0584 3742384 3744840 + copper-exporting ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0584 TREPR_0585 TREPR_0585 TREPR_0585 3741657 3742364 + putative lipoprotein gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0585 TREPR_0586 TREPR_0586 TREPR_0586 3740836 3741630 + heavy metal transport/detoxification protein gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0586 TREPR_0587 TREPR_0587 TREPR_0587 3739737 3740759 + khg/kdpg family aldolase/carbohydrate kinase%2C pfkb family identified by match to protein family HMM PF00294 gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0587 TREPR_0588 TREPR_0588 TREPR_0588 3738611 3739591 + khg/kdpg family aldolase/carbohydrate kinase%2C pfkb family identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182 gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0588 TREPR_0589 TREPR_0589 uxaC uxaC 3737155 3738627 + glucuronate isomerase identified by match to protein family HMM PF02614 gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0589 TREPR_0590 TREPR_0590 TREPR_0590 3735516 3737141 + mannitol-1-phosphate/altronate dehydrogenase identified by match to protein family HMM PF08125 gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0590 TREPR_0591 TREPR_0591 uxuA uxuA 3734424 3735491 + mannonate dehydratase identified by match to protein family HMM PF01261%3B match to protein family HMM PF03786%3B match to protein family HMM TIGR00695 gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0591 TREPR_0592 TREPR_0592 TREPR_0592 3733108 3734403 + trap dicarboxylate transporter%2C dctm subunit identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR00786 gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0592 TREPR_0593 TREPR_0593 TREPR_0593 3732591 3733097 + putative tripartite ATP-independent periplasmic transporter%2C DctQ component identified by match to protein family HMM PF04290 gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0593 TREPR_0594 TREPR_0594 TREPR_0594 3731498 3732508 + putative trap dicarboxylate transporter%2C dctp subunit identified by match to protein family HMM PF03480 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0594 TREPR_0595 TREPR_0595 TREPR_0595 3730643 3731392 + transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0595 TREPR_0596 TREPR_0596 groL groL 3728822 3730468 + chaperonin GroL identified by match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0596 TREPR_0597 TREPR_0597 TREPR_0597 3727635 3728633 - oxidoreductase identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0597 TREPR_0598 TREPR_0598 rnhA rnhA 3727145 3727591 + ribonuclease HI identified by match to protein family HMM PF00075 gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0598 TREPR_0599 TREPR_0599 TREPR_0599 3726911 3727141 + conserved domain protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0599 TREPR_0600 TREPR_0600 TREPR_0600 3725573 3726742 - putative lipoprotein gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0600 TREPR_0601 TREPR_0601 TREPR_0601 3724282 3724866 + MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0601 TREPR_0602 TREPR_0602 TREPR_0602 3724848 3725576 - treponemal membrane protein B (Antigen TmpB) gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0602 TREPR_0603 TREPR_0603 TREPR_0603 3723335 3724156 - Putative phospholipid-binding domain family protein identified by match to protein family HMM PF04972 gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0603 TREPR_0604 TREPR_0604 TREPR_0604 3722016 3723242 - putative endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0604 TREPR_0605 TREPR_0605 TREPR_0605 3721600 3721875 - putative virulence protein gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0605 TREPR_0606 TREPR_0606 TREPR_0606 3721205 3721600 - putative virulence-associated protein identified by match to protein family HMM PF01850 gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0606 TREPR_0607 TREPR_0607 TREPR_0607 3720400 3721176 - RNA methyltransferase%2C TrmH family identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032 gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0607 TREPR_0608 TREPR_0608 TREPR_0608 3718180 3719538 + diphosphate--fructose-6-phosphate 1-phosphotransferase identified by match to protein family HMM PF00365 gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0608 TREPR_0609 TREPR_0609 TREPR_0609 3719535 3720398 - hypothetical protein identified by glimmer%3B putative gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0609 TREPR_0610 TREPR_0610 TREPR_0610 3717765 3717989 - iron-sulfur cluster-binding protein%2C Rieske family identified by match to protein family HMM PF01106 gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0610 TREPR_0611 TREPR_0611 TREPR_0611 3715934 3717775 - radical SAM N- domain protein identified by match to protein family HMM PF04055%3B match to protein family HMM PF08497 gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0611 TREPR_0612 TREPR_0612 TREPR_0612 3715431 3715874 - nucleoside-diphosphate kinase identified by match to protein family HMM PF00334 gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0612 TREPR_0613 TREPR_0613 TREPR_0613 3713564 3715447 - oligoendopeptidase%2C PepF/M3 family identified by match to protein family HMM PF01432%3B match to protein family HMM PF08439%3B match to protein family HMM TIGR02290 gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0613 TREPR_0614 TREPR_0614 TREPR_0614 3712405 3713472 - glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) identified by match to protein family HMM PF01210%3B match to protein family HMM PF07479 gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0614 TREPR_0615 TREPR_0615 ffh ffh 3711025 3712401 - signal recognition particle protein identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0615 TREPR_0616 TREPR_0616 TREPR_0616 3708286 3710994 - PAS domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0616 TREPR_0617 TREPR_0617 TREPR_0617 3706705 3708108 - adenylate cyclase (ATP pyrophosphate-lyase) (Adenylylcyclase) identified by match to protein family HMM PF00560 gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0617 TREPR_0618 TREPR_0618 TREPR_0618 3705845 3706693 + hypothetical protein identified by glimmer%3B putative gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0618 TREPR_0621 TREPR_0621 TREPR_0621 3704358 3705389 - hypothetical protein identified by glimmer%3B putative gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0621 TREPR_0622 TREPR_0622 TREPR_0622 3703664 3704242 - appr-1-p processing domain protein identified by match to protein family HMM PF01661 gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0622 TREPR_0623 TREPR_0623 TREPR_0623 3702811 3703653 - hypothetical protein identified by glimmer%3B putative gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0623 TREPR_0624 TREPR_0624 TREPR_0624 3701959 3702798 - conserved hypothetical protein gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0624 TREPR_0625 TREPR_0625 TREPR_0625 3701398 3701871 - putative MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0625 TREPR_0626 TREPR_0626 TREPR_0626 3700288 3701397 - hypothetical protein identified by glimmer%3B putative gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0626 TREPR_0627 TREPR_0627 feoB feoB 3697769 3699934 + ferrous iron transport protein B identified by match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437 gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0627 TREPR_0628 TREPR_0628 TREPR_0628 3697390 3697782 + ferrous iron transport protein B%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF04023 pseudogene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0628 TREPR_0629 TREPR_0629 TREPR_0629 3696055 3697200 - cystathionine gamma-lyase identified by match to protein family HMM PF01053 gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0629 TREPR_0630 TREPR_0630 TREPR_0630 3694813 3696045 - cystathionine gamma-lyase identified by match to protein family HMM PF01053 gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0630 TREPR_0631 TREPR_0631 TREPR_0631 3694228 3694662 - RRF2-family transcriptional regulator identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0631 TREPR_0632 TREPR_0632 TREPR_0632 3693797 3694231 - transcriptional regulator%2C BadM/Rrf2 family identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0632 TREPR_0633 TREPR_0633 TREPR_0633 3691369 3692631 + glycosyltransferase family 1%2C candidate beta-glycosyltransferase identified by match to protein family HMM PF03033 gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0633 TREPR_0634 TREPR_0634 TREPR_0634 3692603 3693778 - aminotransferase YbdL identified by match to protein family HMM PF00155 gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0634 TREPR_0635 TREPR_0635 TREPR_0635 3690133 3691356 + glycosyltransferase family 1%2C candidate beta-glycosyltransferase identified by match to protein family HMM PF03033 gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0635 TREPR_0636 TREPR_0636 TREPR_0636 3688904 3690136 + putative Fe-S oxidoreductase identified by match to protein family HMM PF04055 gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0636 TREPR_0637 TREPR_0637 TREPR_0637 3687811 3688800 + bile acid:sodium symporter identified by match to protein family HMM PF01758 gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0637 TREPR_0638 TREPR_0638 clpB clpB 3685111 3687729 - ATP-dependent chaperone ClpB identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03346 gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0638 TREPR_0639 TREPR_0639 hflX hflX 3683761 3685104 + GTP-binding protein HflX identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR03156 gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0639 TREPR_0640 TREPR_0640 aroC aroC 3682513 3683697 + chorismate synthase identified by match to protein family HMM PF01264%3B match to protein family HMM TIGR00033 gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0640 TREPR_0641 TREPR_0641 TREPR_0641 3681698 3682432 - putative hydrolase identified by match to protein family HMM PF02811 gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0641 TREPR_0643 TREPR_0643 TREPR_0643 3680035 3681294 - hypothetical protein identified by glimmer%3B putative gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0643 TREPR_0644 TREPR_0644 TREPR_0644 3678461 3679972 + hypothetical protein identified by glimmer%3B putative gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0644 TREPR_0645 TREPR_0645 TREPR_0645 3677187 3678344 + putative lipoprotein gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0645 TREPR_0646 TREPR_0646 TREPR_0646 3676334 3677143 + putative lipoprotein gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0646 TREPR_0647 TREPR_0647 TREPR_0647 3675671 3676234 + putative lipoprotein gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0647 TREPR_0648 TREPR_0648 uvrB uvrB 3673499 3675490 - excinuclease ABC%2C B subunit identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631 gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0648 TREPR_0649 TREPR_0649 pyk pyk 3671619 3673412 - pyruvate kinase identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0649 TREPR_0650 TREPR_0650 TREPR_0650 3670577 3671506 + OmpA family protein identified by match to protein family HMM PF00691 gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0650 TREPR_0651 TREPR_0651 TREPR_0651 3669382 3670476 + transcriptional Regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0651 TREPR_0652 TREPR_0652 TREPR_0652 3668937 3669338 + type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI) gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0652 TREPR_0653 TREPR_0653 TREPR_0653 3667779 3668837 + modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI) identified by match to protein family HMM PF07669 gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0653 TREPR_0654 TREPR_0654 TREPR_0654 3667715 3667828 - hypothetical protein identified by glimmer%3B putative gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0654 TREPR_0655 TREPR_0655 TREPR_0655 3666099 3667622 - sugar kinase%2C fggy family identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0655 TREPR_0656 TREPR_0656 TREPR_0656 3665304 3666080 - 3-oxoacyl-[acyl-carrier-protein] reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0656 TREPR_0657 TREPR_0657 TREPR_0657 3664210 3665265 - iron ABC transporter substrate-binding protein identified by match to protein family HMM PF01547 gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0657 TREPR_0658 TREPR_0658 TREPR_0658 3662488 3664149 - iron(III) dicitrate transport ATP-binding protein FecE identified by match to protein family HMM PF00528 gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0658 TREPR_0659 TREPR_0659 TREPR_0659 3661382 3662446 - spermidine/putrescine ABC transporter ATP-binding subunit identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0659 TREPR_0660 TREPR_0660 TREPR_0660 3660546 3661373 - inositol-1-monophosphatase identified by match to protein family HMM PF00459 gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0660 TREPR_0661 TREPR_0661 TREPR_0661 3659824 3660540 - putative amidohydrolase 2 identified by match to protein family HMM PF04909 gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0661 TREPR_0662 TREPR_0662 TREPR_0662 3659510 3659800 - conserved hypothetical protein gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0662 TREPR_0663 TREPR_0663 proS proS 3657613 3659478 + proline--tRNA ligase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00409 gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0663 TREPR_0664 TREPR_0664 TREPR_0664 3656676 3657524 - putative membrane protein gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0664 TREPR_0665 TREPR_0665 TREPR_0665 3654073 3656622 + putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) identified by match to protein family HMM PF02637%3B match to protein family HMM PF02934 gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0665 TREPR_0667 TREPR_0667 TREPR_0667 3652402 3653826 - conserved hypothetical protein gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0667 TREPR_0668 TREPR_0668 TREPR_0668 3650860 3652398 - putative exopolyphosphatase identified by match to protein family HMM PF01966%3B match to protein family HMM PF02541 gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0668 TREPR_0669 TREPR_0669 ppk ppk 3648628 3650829 - polyphosphate kinase identified by match to protein family HMM PF02503 gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0669 TREPR_0670 TREPR_0670 TREPR_0670 3647261 3648622 - PUA domain protein identified by match to protein family HMM PF01170%3B match to protein family HMM PF03602%3B match to protein family HMM PF05175 gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0670 TREPR_0671 TREPR_0671 TREPR_0671 3645321 3646907 - putative ABC transporter peptide-binding protein identified by match to protein family HMM PF00496 gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0671 TREPR_0672 TREPR_0672 TREPR_0672 3644307 3645257 - oligopeptide transport system permease protein AppB identified by match to protein family HMM PF00528 gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0672 TREPR_0673 TREPR_0673 TREPR_0673 3643341 3644273 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0673 TREPR_0674 TREPR_0674 TREPR_0674 3642310 3643341 - oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0674 TREPR_0675 TREPR_0675 TREPR_0675 3641340 3642317 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0675 TREPR_0676 TREPR_0676 TREPR_0676 3640074 3641318 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0676 TREPR_0677 TREPR_0677 TREPR_0677 3638678 3639934 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0677 TREPR_0679 TREPR_0679 TREPR_0679 3637291 3638487 - radical SAM domain protein gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0679 TREPR_0680 TREPR_0680 TREPR_0680 3636375 3637187 - phosphorylase family protein identified by match to protein family HMM PF01048 gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0680 TREPR_0681 TREPR_0681 TREPR_0681 3634062 3636128 - Na+/H+ antiporter identified by match to protein family HMM PF00359%3B match to protein family HMM PF00999 gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0681 TREPR_0682 TREPR_0682 holA holA 3633074 3634042 + DNA polymerase III%2C delta subunit identified by match to protein family HMM PF06144%3B match to protein family HMM TIGR01128 gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0682 TREPR_0683 TREPR_0683 lexA lexA 3632446 3633066 + LexA repressor identified by match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498 gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0683 TREPR_0684 TREPR_0684 TREPR_0684 3631064 3632449 + nitrogen assimilation regulatory protein NtrX identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0684 TREPR_0685 TREPR_0685 TREPR_0685 3629271 3631067 + histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0685 TREPR_0686 TREPR_0686 ptsH ptsH 3628991 3629257 + phosphocarrier protein HPr identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0686 TREPR_0687 TREPR_0687 hprK hprK 3627967 3628974 + HPr(Ser) kinase/phosphatase identified by match to protein family HMM PF02603%3B match to protein family HMM PF07475%3B match to protein family HMM TIGR00679 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0687 TREPR_0688 TREPR_0688 TREPR_0688 3627464 3627802 - anti-anti-sigma factor identified by match to protein family HMM PF01740%3B match to protein family HMM TIGR00377 gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0688 TREPR_0689 TREPR_0689 TREPR_0689 3626856 3627440 - conserved hypothetical protein gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0689 TREPR_0690 TREPR_0690 TREPR_0690 3625618 3626850 + type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0690 TREPR_0692 TREPR_0692 TREPR_0692 3623640 3624923 - metal dependent phosphohydrolase identified by match to protein family HMM PF01966 gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0692 TREPR_0693 TREPR_0693 TREPR_0693 3622918 3623625 - conserved hypothetical protein gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0693 TREPR_0694 TREPR_0694 TREPR_0694 3622768 3622908 + hypothetical protein identified by glimmer%3B putative gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0694 TREPR_0696 TREPR_0696 TREPR_0696 3621219 3622382 - hypothetical protein identified by glimmer%3B putative gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0696 TREPR_0697 TREPR_0697 TREPR_0697 3619341 3619496 + conserved hypothetical protein gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0697 TREPR_0698 TREPR_0698 TREPR_0698 3619477 3621171 - PAS domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0698 TREPR_0699 TREPR_0699 TREPR_0699 3617238 3619388 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0699 TREPR_0700 TREPR_0700 TREPR_0700 3616142 3617185 + oxidoreductase identified by match to protein family HMM PF01408 gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0700 TREPR_0701 TREPR_0701 TREPR_0701 3615582 3616145 + death-on-curing family protein gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0701 TREPR_0702 TREPR_0702 TREPR_0702 3614584 3615585 + conserved hypothetical protein gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0702 TREPR_0703 TREPR_0703 TREPR_0703 3613233 3614195 - inner membrane ABC transporter permease protein YddR identified by match to protein family HMM PF00528 gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0703 TREPR_0704 TREPR_0704 TREPR_0704 3612355 3613236 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0704 TREPR_0705 TREPR_0705 TREPR_0705 3611313 3612347 - oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0705 TREPR_0706 TREPR_0706 TREPR_0706 3610360 3611316 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0706 TREPR_0707 TREPR_0707 TREPR_0707 3608782 3610314 - dipeptide-binding protein identified by match to protein family HMM PF00496 gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0707 TREPR_0708 TREPR_0708 TREPR_0708 3607958 3608725 - creatininase identified by match to protein family HMM PF02633 gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0708 TREPR_0709 TREPR_0709 TREPR_0709 3606861 3607937 - peptidase M42 family identified by match to protein family HMM PF05343 gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0709 TREPR_0710 TREPR_0710 TREPR_0710 3605785 3606852 - hypothetical protein identified by glimmer%3B putative gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0710 TREPR_0711 TREPR_0711 TREPR_0711 3604403 3605737 + NADH oxidase (noxase) identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0711 TREPR_0712 TREPR_0712 TREPR_0712 3604228 3604353 + hypothetical protein identified by glimmer%3B putative gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0712 TREPR_0713 TREPR_0713 TREPR_0713 3602036 3604147 - hypothetical protein identified by glimmer%3B putative gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0713 TREPR_0714 TREPR_0714 TREPR_0714 3601000 3602013 + LysM domain/M23/M37 peptidase domain protein identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0714 TREPR_0715 TREPR_0715 TREPR_0715 3600370 3600966 + conserved hypothetical protein identified by match to protein family HMM PF02151%3B match to protein family HMM PF02577 gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0715 TREPR_0716 TREPR_0716 TREPR_0716 3599307 3600359 + polyprenyl synthetase family protein identified by match to protein family HMM PF00348 gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0716 TREPR_0717 TREPR_0717 rrmJ rrmJ 3598610 3599254 - ribosomal RNA large subunit methyltransferase J identified by match to protein family HMM PF01728 gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0717 TREPR_0718 TREPR_0718 TREPR_0718 3596365 3598536 + BNR repeat domain protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0718 TREPR_0719 TREPR_0719 TREPR_0719 3595330 3596142 - putative creatininase identified by match to protein family HMM PF02633 gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0719 TREPR_0720 TREPR_0720 TREPR_0720 3594563 3595330 - aldo/keto reductase identified by match to protein family HMM PF00248 gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0720 TREPR_0721 TREPR_0721 TREPR_0721 3593374 3594570 - putative 5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) identified by match to protein family HMM PF01979 gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0721 TREPR_0722 TREPR_0722 TREPR_0722 3592509 3593330 - putative amino acid ABC transporter%2C periplasmic amino acid-binding protein identified by match to protein family HMM PF00497 gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0722 TREPR_0723 TREPR_0723 TREPR_0723 3591799 3592488 - amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0723 TREPR_0724 TREPR_0724 TREPR_0724 3591057 3591812 - glutamine transport ATP-binding protein GlnQ identified by match to protein family HMM PF00005 gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0724 TREPR_0725 TREPR_0725 TREPR_0725 3590474 3590953 + flavodoxin gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0725 TREPR_0726 TREPR_0726 TREPR_0726 3588582 3590372 - lipid A export ATP-binding/permease protein MsbA identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0726 TREPR_0727 TREPR_0727 TREPR_0727 3587438 3588478 + galactoside transport system permease protein MglC identified by match to protein family HMM PF02653 gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0727 TREPR_0728 TREPR_0728 TREPR_0728 3585909 3587423 + galactose/methyl galactoside import ATP-binding protein MglA identified by match to protein family HMM PF00005 gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0728 TREPR_0729 TREPR_0729 TREPR_0729 3584819 3585832 + D-galactose-binding periplasmic protein (gbp) (d-galactose/d-glucose-binding protein) (ggbp) gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0729 TREPR_0730 TREPR_0730 TREPR_0730 3583428 3584693 - DNA repair exonuclease%2C SbcD identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00619 gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0730 TREPR_0731 TREPR_0731 TREPR_0731 3580249 3583431 - nuclease sbcCD subunit C gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0731 TREPR_0733 TREPR_0733 TREPR_0733 3578415 3579758 + MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0733 TREPR_0734 TREPR_0734 TREPR_0734 3578109 3578405 + acylphosphatase identified by match to protein family HMM PF00708 gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0734 TREPR_0735 TREPR_0735 glyS glyS 3576708 3578096 + glycine--tRNA ligase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00389 gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0735 TREPR_0738 TREPR_0738 TREPR_0738 3574869 3575924 - putative transposase identified by match to protein family HMM PF00665 gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0738 TREPR_0739 TREPR_0739 TREPR_0739 3574349 3574747 - hypothetical protein identified by glimmer%3B putative gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0739 TREPR_0740 TREPR_0740 TREPR_0740 3573528 3574283 - hypothetical protein identified by glimmer%3B putative gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0740 TREPR_0741 TREPR_0741 TREPR_0741 3573165 3573452 + conserved hypothetical protein identified by match to protein family HMM PF08922 gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0741 TREPR_0742 TREPR_0742 TREPR_0742 3572877 3573077 + conserved hypothetical protein gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0742 TREPR_0743 TREPR_0743 TREPR_0743 3572496 3572831 + DNA polymerase%2C beta domain protein region identified by match to protein family HMM PF01909 gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0743 TREPR_0744 TREPR_0744 TREPR_0744 3571979 3572464 + RRF2 family protein identified by match to protein family HMM PF02082 gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0744 TREPR_0745 TREPR_0745 TREPR_0745 3570944 3571783 - 4Fe-4S ferredoxin%2C iron-sulfur binding protein gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0745 TREPR_0746 TREPR_0746 TREPR_0746 3570177 3570791 - nitroreductase identified by match to protein family HMM PF00881 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0746 TREPR_0747 TREPR_0747 TREPR_0747 3566095 3570063 - hypothetical protein identified by glimmer%3B putative gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0747 TREPR_0748 TREPR_0748 TREPR_0748 3565216 3566082 - endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0748 TREPR_0749 TREPR_0749 TREPR_0749 3561838 3565197 + DNA and RNA helicase identified by match to protein family HMM PF00580 gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0749 TREPR_0750 TREPR_0750 TREPR_0750 3558879 3561737 + putative outer membrane autotransporter barrel domain protein gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0750 TREPR_0751 TREPR_0751 TREPR_0751 3558743 3558886 - hypothetical protein identified by glimmer%3B putative gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0751 TREPR_0752 TREPR_0752 TREPR_0752 3558501 3558662 + hypothetical protein identified by glimmer%3B putative gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0752 TREPR_0753 TREPR_0753 TREPR_0753 3557362 3558390 - methyltransferase MtaA/CmuA family identified by match to protein family HMM PF01208 gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0753 TREPR_0754 TREPR_0754 TREPR_0754 3556786 3557361 - conserved hypothetical protein gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0754 TREPR_0755 TREPR_0755 TREPR_0755 3556057 3556752 - dimethylamine corrinoid protein identified by match to protein family HMM PF02310%3B match to protein family HMM PF02607 gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0755 TREPR_0756 TREPR_0756 TREPR_0756 3555023 3556060 - uroporphyrinogen decarboxylase identified by match to protein family HMM PF01208 gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0756 TREPR_0757 TREPR_0757 TREPR_0757 3553326 3554957 - conserved hypothetical protein identified by match to protein family HMM PF01957 gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0757 TREPR_0758 TREPR_0758 TREPR_0758 3552264 3553262 - band 7 protein gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0758 TREPR_0759 TREPR_0759 TREPR_0759 3551682 3552263 - conserved hypothetical protein gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0759 TREPR_0760 TREPR_0760 TREPR_0760 3551312 3551680 - hypothetical protein identified by glimmer%3B putative gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0760 TREPR_0761 TREPR_0761 TREPR_0761 3550991 3551206 + 31 kDa ribonucleoprotein%2C (RNA-binding proteinRNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00076 pseudogene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0761 TREPR_0763 TREPR_0763 TREPR_0763 3550294 3550488 - hypothetical protein identified by glimmer%3B putative gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0763 TREPR_0764 TREPR_0764 TREPR_0764 3549927 3550196 - RNA-binding protein identified by match to protein family HMM PF00076 gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0764 TREPR_0765 TREPR_0765 TREPR_0765 3548295 3549785 + HD domain protein identified by match to protein family HMM PF01966%3B match to protein family HMM PF08668%3B match to protein family HMM TIGR00277 gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0765 TREPR_0766 TREPR_0766 TREPR_0766 3546689 3548152 - hypothetical protein identified by glimmer%3B putative gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0766 TREPR_0767 TREPR_0767 TREPR_0767 3545931 3546692 - conserved hypothetical protein identified by match to protein family HMM PF01784%3B match to protein family HMM TIGR00486 gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0767 TREPR_0768 TREPR_0768 lspA lspA 3545365 3545919 - signal peptidase II identified by match to protein family HMM PF01252%3B match to protein family HMM TIGR00077 gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0768 TREPR_0769 TREPR_0769 TREPR_0769 3545109 3545381 - hypothetical protein identified by glimmer%3B putative gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0769 TREPR_0770 TREPR_0770 TREPR_0770 3543423 3545093 + conserved hypothetical protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0770 TREPR_0773 TREPR_0773 TREPR_0773 3542419 3542706 + probable addiction module antidote protein identified by match to protein family HMM TIGR02684 gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0773 TREPR_0774 TREPR_0774 TREPR_0774 3542127 3542432 + probable addiction module killer protein identified by match to protein family HMM PF05973%3B match to protein family HMM TIGR02683 gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0774 TREPR_0775 TREPR_0775 TREPR_0775 3541911 3542084 - multiphosphoryl transfer protein 1 (MTP 1) gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0775 TREPR_0776 TREPR_0776 eno eno 3540528 3541829 + phosphopyruvate hydratase identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060 gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0776 TREPR_0777 TREPR_0777 TREPR_0777 3539687 3540295 - conserved hypothetical protein gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0777 TREPR_0778 TREPR_0778 TREPR_0778 3537906 3539639 + hypothetical protein identified by glimmer%3B putative gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0778 TREPR_0779 TREPR_0779 nusB nusB 3537403 3537909 + transcription antitermination factor NusB identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951 gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0779 TREPR_0780 TREPR_0780 TREPR_0780 3536041 3537399 + putative lipoprotein gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0780 TREPR_0781 TREPR_0781 alaS alaS 3534187 3535977 + alanine--tRNA ligase identified by match to protein family HMM PF01411%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0781 TREPR_0782 TREPR_0782 TREPR_0782 3533647 3534048 + hypothetical protein identified by glimmer%3B putative gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0782 TREPR_0783 TREPR_0783 TREPR_0783 3533243 3533470 - ABC transporter component A gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0783 TREPR_0784 TREPR_0784 TREPR_0784 3532701 3532910 + hypothetical protein identified by glimmer%3B putative gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0784 TREPR_0785 TREPR_0785 TREPR_0785 3532306 3532704 + hypothetical protein identified by glimmer%3B putative gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0785 TREPR_0786 TREPR_0786 TREPR_0786 3531013 3531891 + cell surface protein gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0786 TREPR_0787 TREPR_0787 TREPR_0787 3530755 3531003 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0787 TREPR_0789 TREPR_0789 TREPR_0789 3530261 3530425 + hypothetical protein identified by glimmer%3B putative gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0789 TREPR_0790 TREPR_0790 TREPR_0790 3529318 3530232 + hypothetical protein identified by glimmer%3B putative gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0790 TREPR_0791 TREPR_0791 TREPR_0791 3528734 3529123 + glyoxalase domain protein identified by match to protein family HMM PF00903 gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0791 TREPR_0792 TREPR_0792 TREPR_0792 3529101 3529274 - hypothetical protein identified by glimmer%3B putative gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0792 TREPR_0793 TREPR_0793 TREPR_0793 3527800 3528732 + tetratricopeptide repeat domain protein gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0793 TREPR_0794 TREPR_0794 TREPR_0794 3526729 3527772 + Mce-like protein identified by match to protein family HMM PF02470 gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0794 TREPR_0795 TREPR_0795 TREPR_0795 3525995 3526732 + putative ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0795 TREPR_0796 TREPR_0796 TREPR_0796 3525217 3525987 + ABC transporter permease protein identified by match to protein family HMM PF02405 gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0796 TREPR_0797 TREPR_0797 TREPR_0797 3524800 3525159 + branched-chain amino acid transport identified by match to protein family HMM PF05437 gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0797 TREPR_0798 TREPR_0798 TREPR_0798 3524073 3524807 + branched-chain amino acid transport protein AzlC identified by match to protein family HMM PF03591 gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0798 TREPR_0799 TREPR_0799 TREPR_0799 3523456 3524031 - conserved hypothetical protein identified by match to protein family HMM PF01871%3B match to protein family HMM TIGR00296 gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0799 TREPR_0800 TREPR_0800 TREPR_0800 3523106 3523417 - conserved domain protein identified by match to protein family HMM PF01371 gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0800 TREPR_0801 TREPR_0801 TREPR_0801 3522364 3523098 + phosphoglycolate phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0801 TREPR_0802 TREPR_0802 TREPR_0802 3520995 3522365 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0802 TREPR_0803 TREPR_0803 TREPR_0803 3520095 3520979 + methyltransferase type 12 identified by match to protein family HMM PF02353%3B match to protein family HMM PF07021%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0803 TREPR_0804 TREPR_0804 TREPR_0804 3519225 3520088 + hypothetical protein identified by glimmer%3B putative gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0804 TREPR_0805 TREPR_0805 TREPR_0805 3518008 3519222 + hypothetical protein identified by glimmer%3B putative gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0805 TREPR_0808 TREPR_0808 TREPR_0808 3516109 3517284 - ATPase%2C AAA family identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0808 TREPR_0809 TREPR_0809 TREPR_0809 3514418 3516091 - hypothetical protein identified by glimmer%3B putative gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0809 TREPR_0810 TREPR_0810 TREPR_0810 3513731 3514150 - HTH domain protein identified by match to protein family HMM PF08279 gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0810 TREPR_0811 TREPR_0811 TREPR_0811 3511948 3513660 - small GTP-binding protein identified by match to protein family HMM PF00560 gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0811 TREPR_0812 TREPR_0812 TREPR_0812 3510473 3511777 + beta-lactamase domain protein identified by match to protein family HMM PF07521 gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0812 TREPR_0813 TREPR_0813 TREPR_0813 3509482 3510456 + hypothetical protein identified by glimmer%3B putative gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0813 TREPR_0815 TREPR_0815 TREPR_0815 3508396 3508671 + conserved hypothetical protein gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0815 TREPR_0816 TREPR_0816 TREPR_0816 3508101 3508295 + conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0816 TREPR_0817 TREPR_0817 TREPR_0817 3504553 3507948 + type I restriction-modification system R subunit identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04313%3B match to protein family HMM PF04851 gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0817 TREPR_0818 TREPR_0818 TREPR_0818 3503811 3504440 + type I site-specific deoxyribonuclease identified by match to protein family HMM PF01420 gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0818 TREPR_0819 TREPR_0819 TREPR_0819 3502796 3503788 + integrase/recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0819 TREPR_0820 TREPR_0820 TREPR_0820 3501621 3502736 + type I restriction-modification system S subunit identified by match to protein family HMM PF01420 gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0820 TREPR_0821 TREPR_0821 TREPR_0821 3501368 3501619 + hypothetical protein identified by glimmer%3B putative gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0821 TREPR_0822 TREPR_0822 TREPR_0822 3500889 3501371 + conserved hypothetical protein gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0822 TREPR_0823 TREPR_0823 TREPR_0823 3500668 3500892 + conserved hypothetical protein gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0823 TREPR_0824 TREPR_0824 TREPR_0824 3499205 3500671 + type I restriction modification system M subunit identified by match to protein family HMM PF02384 gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0824 TREPR_0825 TREPR_0825 TREPR_0825 3497979 3499025 - oligopeptide transport system permease protein OppB identified by match to protein family HMM PF00528 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0825 TREPR_0826 TREPR_0826 TREPR_0826 3497044 3497982 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0826 TREPR_0827 TREPR_0827 TREPR_0827 3496029 3497054 - dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0827 TREPR_0828 TREPR_0828 TREPR_0828 3495034 3496026 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0828 TREPR_0829 TREPR_0829 TREPR_0829 3493607 3495016 + probable M18 family aminopeptidase 1 identified by match to protein family HMM PF02127 gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0829 TREPR_0830 TREPR_0830 TREPR_0830 3491838 3493442 - OppA1 identified by match to protein family HMM PF00496 gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0830 TREPR_0831 TREPR_0831 TREPR_0831 3490539 3491702 + thermostable carboxypeptidase 1 identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0831 TREPR_0832 TREPR_0832 TREPR_0832 3489845 3490525 + D-methionine transport system permease protein MetI identified by match to protein family HMM PF00528 gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0832 TREPR_0833 TREPR_0833 TREPR_0833 3488803 3489852 + methionine import ATP-binding protein MetN identified by match to protein family HMM PF00005%3B match to protein family HMM PF09383 gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0833 TREPR_0834 TREPR_0834 metQ metQ 3488353 3488733 + D-methionine ABC transporter%2C periplasmic D-methionine-binding protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF03180 pseudogene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0834 TREPR_0835 TREPR_0835 TREPR_0835 3487923 3488324 + D-methionine-binding lipoprotein MetQ%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF03180 pseudogene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0835 TREPR_0836 TREPR_0836 TREPR_0836 3486570 3487823 + cystathionine gamma-synthase identified by match to protein family HMM PF01053 gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0836 TREPR_0837 TREPR_0837 TREPR_0837 3485735 3486571 - conserved hypothetical protein gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0837 TREPR_0838 TREPR_0838 glgX glgX 3483572 3485725 - glycogen debranching enzyme GlgX identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100 gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0838 TREPR_0839 TREPR_0839 TREPR_0839 3482927 3483556 - 5 nucleotidase%2C deoxy%2C cytosolic type C identified by match to protein family HMM PF06941 gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0839 TREPR_0840 TREPR_0840 TREPR_0840 3481408 3482922 - radical SAM identified by match to protein family HMM PF04055 gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0840 TREPR_0841 TREPR_0841 TREPR_0841 3478495 3481254 - putative lipoprotein gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0841 TREPR_0842 TREPR_0842 TREPR_0842 3477305 3478495 - hypothetical protein identified by glimmer%3B putative gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0842 TREPR_0843 TREPR_0843 TREPR_0843 3476161 3476523 + transcriptional regulator%2C HxlR family identified by match to protein family HMM PF01638 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0843 TREPR_0844 TREPR_0844 TREPR_0844 3476520 3477263 - putative acyl-ACP thioesterase superfamily identified by match to protein family HMM PF01643 gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0844 TREPR_0845 TREPR_0845 TREPR_0845 3476052 3476207 - hypothetical protein identified by glimmer%3B putative gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0845 TREPR_0846 TREPR_0846 TREPR_0846 3475644 3475949 - pyridoxamine 5'-phosphate oxidase family protein identified by match to protein family HMM PF01243 gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0846 TREPR_0847 TREPR_0847 TREPR_0847 3475041 3475634 - conserved hypothetical protein gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0847 TREPR_0848 TREPR_0848 TREPR_0848 3474405 3475019 - 5-formyltetrahydrofolate cyclo-ligase identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0848 TREPR_0849 TREPR_0849 TREPR_0849 3473802 3474389 - hypothetical protein identified by glimmer%3B putative gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0849 TREPR_0850 TREPR_0850 rpmB rpmB 3473502 3473693 - ribosomal protein L28 identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009 gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0850 TREPR_0851 TREPR_0851 TREPR_0851 3471819 3473474 - poly-gamma-glutamate biosynthesis protein identified by match to protein family HMM PF09587 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0851 TREPR_0852 TREPR_0852 TREPR_0852 3470771 3471640 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0852 TREPR_0853 TREPR_0853 TREPR_0853 3469890 3470699 - zinc transporter%2C ZIP family identified by match to protein family HMM PF02535 gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0853 TREPR_0854 TREPR_0854 TREPR_0854 3469206 3469841 - adenylate kinase identified by match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351 gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0854 TREPR_0855 TREPR_0855 TREPR_0855 3465339 3469112 + sensory transduction histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01590%3B match to protein family HMM PF01814%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR02481 gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0855 TREPR_0856 TREPR_0856 TREPR_0856 3463528 3465228 - GH3 auxin-responsive promoter superfamily identified by match to protein family HMM PF03321 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0856 TREPR_0857 TREPR_0857 TREPR_0857 3462087 3462908 + glycosyltransferase%2C family 1 identified by match to protein family HMM PF01553 gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0857 TREPR_0858 TREPR_0858 TREPR_0858 3462887 3463252 - hydrolase gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0858 TREPR_0859 TREPR_0859 TREPR_0859 3460190 3462076 + trap dicarboxylate transporter%2C dctm subunit identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR00786 gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0859 TREPR_0860 TREPR_0860 TREPR_0860 3459180 3460193 + putative trap dicarboxylate transporter- dctp subunit identified by match to protein family HMM PF03480 gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0860 TREPR_0861 TREPR_0861 TREPR_0861 3458194 3458379 + hypothetical protein identified by glimmer%3B putative gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0861 TREPR_0862 TREPR_0862 TREPR_0862 3457552 3458037 - hypothetical protein identified by glimmer%3B putative gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0862 TREPR_0863 TREPR_0863 TREPR_0863 3457088 3457390 + hypothetical protein identified by glimmer%3B putative gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0863 TREPR_0864 TREPR_0864 TREPR_0864 3456361 3456963 - conserved hypothetical protein identified by match to protein family HMM PF07605 gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0864 TREPR_0865 TREPR_0865 TREPR_0865 3456138 3456257 + hypothetical protein identified by glimmer%3B putative gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0865 TREPR_0866 TREPR_0866 TREPR_0866 3455639 3456160 - conserved hypothetical protein gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0866 TREPR_0867 TREPR_0867 TREPR_0867 3452127 3455642 - putative filamentous haemagglutinin family outer membrane protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF07581 pseudogene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0867 TREPR_0868 TREPR_0868 TREPR_0868 3449771 3451861 - glug identified by match to protein family HMM PF07581 gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0868 TREPR_0869 TREPR_0869 TREPR_0869 3449569 3449694 - hypothetical protein identified by glimmer%3B putative gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0869 TREPR_0870 TREPR_0870 TREPR_0870 3449379 3449582 - hypothetical protein identified by glimmer%3B putative gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0870 TREPR_0871 TREPR_0871 TREPR_0871 3449046 3449276 + hypothetical protein identified by glimmer%3B putative gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0871 TREPR_0872 TREPR_0872 TREPR_0872 3448785 3449036 + hypothetical protein identified by glimmer%3B putative gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0872 TREPR_0873 TREPR_0873 TREPR_0873 3448655 3448768 + hypothetical protein identified by glimmer%3B putative gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0873 TREPR_0874 TREPR_0874 TREPR_0874 3448200 3448658 + hypothetical protein identified by glimmer%3B putative gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0874 TREPR_0875 TREPR_0875 TREPR_0875 3446448 3448193 - putative surface antigen BspA gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0875 TREPR_0876 TREPR_0876 TREPR_0876 3445955 3446086 + hypothetical protein identified by glimmer%3B putative gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0876 TREPR_0877 TREPR_0877 TREPR_0877 3446059 3446307 - transposase gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0877 TREPR_0878 TREPR_0878 TREPR_0878 3445160 3445873 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0878 TREPR_0879 TREPR_0879 TREPR_0879 3444064 3444984 + hypothetical protein identified by glimmer%3B putative gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0879 TREPR_0880 TREPR_0880 TREPR_0880 3443465 3444061 + hypothetical protein identified by glimmer%3B putative gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0880 TREPR_0881 TREPR_0881 TREPR_0881 3442866 3443420 + lecithin retinol acyltransferase (Phosphatidylcholine--retinol O-acyltransferase) (Phosphatidylcholine-retinol-O-acyltransferase) gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0881 TREPR_0882 TREPR_0882 TREPR_0882 3442357 3442878 + helix-turn-helix domain protein identified by match to protein family HMM PF01381 gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0882 TREPR_0883 TREPR_0883 TREPR_0883 3442153 3442344 + hypothetical protein identified by glimmer%3B putative gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0883 TREPR_0884 TREPR_0884 TREPR_0884 3441809 3442150 + hypothetical protein identified by glimmer%3B putative gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0884 TREPR_0885 TREPR_0885 TREPR_0885 3441316 3441705 + hypothetical protein identified by glimmer%3B putative gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0885 TREPR_0886 TREPR_0886 TREPR_0886 3440496 3441326 + hypothetical protein identified by glimmer%3B putative gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0886 TREPR_0887 TREPR_0887 TREPR_0887 3440033 3440428 + single-strand binding family protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0887 TREPR_0888 TREPR_0888 TREPR_0888 3439198 3439968 + hypothetical protein identified by glimmer%3B putative gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0888 TREPR_0889 TREPR_0889 TREPR_0889 3438064 3439125 + conserved hypothetical protein gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0889 TREPR_0890 TREPR_0890 TREPR_0890 3437587 3437784 + hypothetical protein identified by glimmer%3B putative gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0890 TREPR_0891 TREPR_0891 TREPR_0891 3437378 3437587 + conserved hypothetical protein gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0891 TREPR_0892 TREPR_0892 TREPR_0892 3436485 3437363 + conserved hypothetical protein gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0892 TREPR_0893 TREPR_0893 TREPR_0893 3436006 3436485 + conserved hypothetical protein gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0893 TREPR_0894 TREPR_0894 TREPR_0894 3435756 3436004 + conserved hypothetical protein gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0894 TREPR_0895 TREPR_0895 TREPR_0895 3435542 3435766 + RNA polymerase beta-subunit gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0895 TREPR_0896 TREPR_0896 TREPR_0896 3434933 3435469 + sugar-phospahte nucleotidyltransferase gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0896 TREPR_0897 TREPR_0897 TREPR_0897 3433910 3434833 + conserved hypothetical protein identified by match to protein family HMM TIGR03299 gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0897 TREPR_0898 TREPR_0898 TREPR_0898 3433297 3433764 + DNA repair protein RadC identified by match to protein family HMM PF04002 gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0898 TREPR_0899 TREPR_0899 TREPR_0899 3432400 3433143 + hypothetical protein identified by glimmer%3B putative gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0899 TREPR_0900 TREPR_0900 TREPR_0900 3430474 3432309 + AAA ATPase gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0900 TREPR_0901 TREPR_0901 TREPR_0901 3429819 3430442 + putative transcriptional regulator identified by match to protein family HMM PF00717 gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0901 TREPR_0902 TREPR_0902 TREPR_0902 3428904 3429707 - conserved hypothetical protein identified by match to protein family HMM PF01904 gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0902 TREPR_0903 TREPR_0903 TREPR_0903 3427684 3428901 - DNA-directed DNA polymerase identified by match to protein family HMM PF00817 gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0903 TREPR_0904 TREPR_0904 TREPR_0904 3424743 3427691 - DNA polymerase III%2C alpha subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0904 TREPR_0906 TREPR_0906 TREPR_0906 3423731 3424570 - hypothetical protein identified by glimmer%3B putative gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0906 TREPR_0907 TREPR_0907 TREPR_0907 3423523 3423699 + hypothetical protein identified by glimmer%3B putative gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0907 TREPR_0908 TREPR_0908 TREPR_0908 3422537 3422725 + conserved domain protein identified by match to protein family HMM PF05930%3B match to protein family HMM TIGR01764 gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0908 TREPR_0909 TREPR_0909 TREPR_0909 3421167 3422387 - hypothetical protein identified by glimmer%3B putative gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0909 TREPR_0911 TREPR_0911 TREPR_0911 3418736 3420652 + hypothetical protein identified by glimmer%3B putative gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0911 TREPR_0912 TREPR_0912 TREPR_0912 3417086 3417949 + conserved hypothetical protein identified by match to protein family HMM PF02195 gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0912 TREPR_0913 TREPR_0913 TREPR_0913 3416316 3417086 + putative plasmid partition protein identified by match to protein family HMM PF01656 gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0913 TREPR_0914 TREPR_0914 TREPR_0914 3415105 3416313 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0914 TREPR_0916 TREPR_0916 TREPR_0916 3413321 3414715 - putative lipoprotein gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0916 TREPR_0917 TREPR_0917 TREPR_0917 3410367 3413306 - multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0917 TREPR_0918 TREPR_0918 deoD deoD 3409615 3410319 + purine nucleoside phosphorylase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR00107 gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0918 TREPR_0921 TREPR_0921 rpmG rpmG 3409160 3409333 - ribosomal protein L33 identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023 gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0921 TREPR_0924 TREPR_0924 secE secE 3408698 3408877 - preprotein translocase%2C SecE subunit identified by match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0924 TREPR_0925 TREPR_0925 nusG nusG 3408115 3408717 - transcription termination/antitermination factor NusG identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0925 TREPR_0926 TREPR_0926 rplK rplK 3407601 3408032 - ribosomal protein L11 identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632 gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0926 TREPR_0927 TREPR_0927 rplA rplA 3406924 3407604 - ribosomal protein L1 identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169 gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0927 TREPR_0928 TREPR_0928 TREPR_0928 3406296 3406847 - 50S ribosomal protein L10 identified by match to protein family HMM PF00466 gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0928 TREPR_0929 TREPR_0929 rplL rplL 3405765 3406151 - ribosomal protein L7/L12 identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855 gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0929 TREPR_0930 TREPR_0930 rpoB rpoB 3402091 3405624 - DNA-directed RNA polymerase%2C beta subunit identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013 gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0930 TREPR_0931 TREPR_0931 rpoC rpoC 3397724 3402061 - DNA-directed RNA polymerase%2C beta' subunit identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386 gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0931 TREPR_0932 TREPR_0932 TREPR_0932 3396661 3397644 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0932 TREPR_0933 TREPR_0933 TREPR_0933 3395666 3396646 + oligopeptide transport ATP-binding protein AppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0933 TREPR_0934 TREPR_0934 TREPR_0934 3394597 3395544 - probable peptide ABC transporter permease protein y4tP identified by match to protein family HMM PF00528 gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0934 TREPR_0935 TREPR_0935 TREPR_0935 3393701 3394597 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0935 TREPR_0936 TREPR_0936 TREPR_0936 3392086 3393639 - putative bacterial extracellular solute-binding protein%2C family 5 identified by match to protein family HMM PF00496 gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0936 TREPR_0937 TREPR_0937 TREPR_0937 3391402 3392007 - pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) identified by match to protein family HMM PF01470 gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0937 TREPR_0938 TREPR_0938 TREPR_0938 3390581 3391402 - probable L-aspartate dehydrogenase identified by match to protein family HMM PF01408%3B match to protein family HMM PF01958%3B match to protein family HMM PF03447 gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0938 TREPR_0939 TREPR_0939 TREPR_0939 3389440 3390564 - putative peptidase M24 identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321 gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0939 TREPR_0941 TREPR_0941 TREPR_0941 3387376 3388443 - ATPase%2C AAA family identified by match to protein family HMM PF07728 gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0941 TREPR_0942 TREPR_0942 TREPR_0942 3386237 3387358 - conserved hypothetical protein gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0942 TREPR_0943 TREPR_0943 TREPR_0943 3384964 3386223 + hypothetical protein identified by glimmer%3B putative gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0943 TREPR_0944 TREPR_0944 TREPR_0944 3384036 3384368 - putative bacteriophage CI repressor protein identified by match to protein family HMM PF07022 gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0944 TREPR_0945 TREPR_0945 TREPR_0945 3383740 3384018 + exonuclease gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0945 TREPR_0946 TREPR_0946 TREPR_0946 3382467 3383468 + conserved hypothetical protein gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0946 TREPR_0947 TREPR_0947 TREPR_0947 3382231 3382392 - hypothetical protein identified by glimmer%3B putative gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0947 TREPR_0948 TREPR_0948 TREPR_0948 3379332 3382187 - conserved hypothetical protein identified by match to protein family HMM PF02384%3B match to protein family HMM PF04313 gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0948 TREPR_0949 TREPR_0949 TREPR_0949 3378454 3379245 - conserved hypothetical protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0949 TREPR_0950 TREPR_0950 TREPR_0950 3377715 3377975 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0950 TREPR_0951 TREPR_0951 TREPR_0951 3377624 3377755 + hypothetical protein identified by glimmer%3B putative gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0951 TREPR_0952 TREPR_0952 TREPR_0952 3377311 3377634 + nucleotidyltransferase family protein identified by match to protein family HMM PF01909 gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0952 TREPR_0953 TREPR_0953 TREPR_0953 3376499 3377248 + ATP-binding protein identified by match to protein family HMM PF00005 gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0953 TREPR_0954 TREPR_0954 TREPR_0954 3375778 3376479 + L-cystine transport system permease protein TcyB identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0954 TREPR_0955 TREPR_0955 TREPR_0955 3374948 3375775 + extracellular solute-binding protein%2C family 3 identified by match to protein family HMM PF00497 gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0955 TREPR_0956 TREPR_0956 TREPR_0956 3374095 3374886 - conserved hypothetical protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0956 TREPR_0957 TREPR_0957 TREPR_0957 3371171 3374083 - anaerobic dimethylsulfoxide reductase%2C A subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR02166 gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0957 TREPR_0958 TREPR_0958 TREPR_0958 3369061 3371127 - conserved hypothetical protein identified by match to protein family HMM PF07929 gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0958 TREPR_0959 TREPR_0959 TREPR_0959 3368579 3369064 - PTS system IIA component%2C fructose subfamily identified by match to protein family HMM PF00359 gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0959 TREPR_0960 TREPR_0960 TREPR_0960 3367806 3368381 - conserved hypothetical protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0960 TREPR_0961 TREPR_0961 TREPR_0961 3366189 3367730 + leucine Rich Repeat domain protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0961 TREPR_0962 TREPR_0962 TREPR_0962 3364950 3365672 - glutamine transport ATP-binding protein GlnQ identified by match to protein family HMM PF00005 gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0962 TREPR_0963 TREPR_0963 TREPR_0963 3364135 3364932 - glutamine-binding protein (GlnBP) identified by match to protein family HMM PF00497 gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0963 TREPR_0964 TREPR_0964 TREPR_0964 3363366 3364178 - glutamine ABC transporter%2C permease/substrate-binding protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0964 TREPR_0965 TREPR_0965 TREPR_0965 3362677 3363369 - polar amino acid ABC transporter%2C inner membrane subunit identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0965 TREPR_0966 TREPR_0966 TREPR_0966 3360614 3362572 - 3-deoxy-7-phosphoheptulonate synthase identified by match to protein family HMM PF00793%3B match to protein family HMM PF00800%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR01361 gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0966 TREPR_0967 TREPR_0967 TREPR_0967 3360472 3360594 - hypothetical protein identified by glimmer%3B putative gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0967 TREPR_0968 TREPR_0968 TREPR_0968 3360135 3360488 - transcriptional regulator identified by match to protein family HMM PF01381 gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0968 TREPR_0969 TREPR_0969 TREPR_0969 3357896 3360127 + PAS domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0969 TREPR_0970 TREPR_0970 TREPR_0970 3356169 3357893 + carbon starvation protein A identified by match to protein family HMM PF02554 gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0970 TREPR_0971 TREPR_0971 TREPR_0971 3355659 3356042 - conserved hypothetical protein gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0971 TREPR_0972 TREPR_0972 TREPR_0972 3354380 3355693 - putative heptaprenyl diphosphate synthase component I identified by match to protein family HMM PF07456 gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0972 TREPR_0973 TREPR_0973 TREPR_0973 3353535 3354383 - amidohydrolase family protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0973 TREPR_0974 TREPR_0974 TREPR_0974 3352433 3353461 + ApbE family protein identified by match to protein family HMM PF02424 gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0974 TREPR_0975 TREPR_0975 TREPR_0975 3353447 3353560 - hypothetical protein identified by glimmer%3B putative gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0975 TREPR_0976 TREPR_0976 ilvB ilvB 3350650 3352449 + acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0976 TREPR_0977 TREPR_0977 ilvD ilvD 3348985 3350646 + dihydroxy-acid dehydratase identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110 gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0977 TREPR_0979 TREPR_0979 leuB leuB 3347658 3348791 + 3-isopropylmalate dehydrogenase identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00169 gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0979 TREPR_0980 TREPR_0980 TREPR_0980 3345982 3347643 + 2-isopropylmalate synthase/homocitrate synthase family protein identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00977 gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0980 TREPR_0981 TREPR_0981 leuA leuA 3344414 3345985 + 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00973 gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0981 TREPR_0982 TREPR_0982 ilvC ilvC 3343254 3344255 + ketol-acid reductoisomerase identified by match to protein family HMM PF01450%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465 gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0982 TREPR_0983 TREPR_0983 ilvN ilvN 3342622 3343137 + acetolactate synthase%2C small subunit identified by match to protein family HMM PF01842%3B match to protein family HMM TIGR00119 gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0983 TREPR_0984 TREPR_0984 TREPR_0984 3341683 3342414 + conserved domain protein identified by match to protein family HMM PF01925 gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0984 TREPR_0985 TREPR_0985 TREPR_0985 3341292 3341681 + hypothetical protein identified by glimmer%3B putative gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0985 TREPR_0986 TREPR_0986 TREPR_0986 3339389 3340798 - GGDEF/EAL/PAS/PAC domain protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0986 TREPR_0987 TREPR_0987 TREPR_0987 3337645 3339387 - AMP-dependent synthetase and ligase identified by match to protein family HMM PF00501 gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0987 TREPR_0988 TREPR_0988 accA_2 accA_2 3336838 3337638 + acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0988 TREPR_0989 TREPR_0989 accD_2 accD_2 3336020 3336838 + acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit identified by match to protein family HMM TIGR00515 gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0989 TREPR_0990 TREPR_0990 TREPR_0990 3335858 3336019 + hypothetical protein identified by glimmer%3B putative gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0990 TREPR_0991 TREPR_0991 TREPR_0991 3335187 3335861 + hypothetical protein identified by glimmer%3B putative gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0991 TREPR_0992 TREPR_0992 TREPR_0992 3334892 3335011 - hypothetical protein identified by glimmer%3B putative gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0992 TREPR_0993 TREPR_0993 TREPR_0993 3333307 3334653 - aminotransferase%2C class I and II identified by match to protein family HMM PF00155 gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0993 TREPR_0994 TREPR_0994 TREPR_0994 3331785 3331976 + hypothetical protein identified by glimmer%3B putative gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0994 TREPR_0995 TREPR_0995 TREPR_0995 3331946 3332911 - hypothetical protein identified by glimmer%3B putative gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0995 TREPR_0996 TREPR_0996 TREPR_0996 3331123 3331788 + secreted protein gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0996 TREPR_0997 TREPR_0997 TREPR_0997 3330852 3330968 - hypothetical protein identified by glimmer%3B putative gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0997 TREPR_0998 TREPR_0998 rpsU rpsU 3330600 3330812 + ribosomal protein S21 identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030 gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0998 TREPR_0999 TREPR_0999 TREPR_0999 3329338 3330504 + M23/M37 peptidase domain protein identified by match to protein family HMM PF01551 gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_0999 TREPR_1000 TREPR_1000 TREPR_1000 3328559 3329203 - hypothetical protein identified by glimmer%3B putative gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1000 TREPR_1001 TREPR_1001 recJ recJ 3326382 3328526 + single-stranded-DNA-specific exonuclease RecJ identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644 gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1001 TREPR_1002 TREPR_1002 TREPR_1002 3325043 3326347 + pyrimidine-nucleoside phosphorylase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02644 gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1002 TREPR_1003 TREPR_1003 TREPR_1003 3324338 3325015 + putative recombination protein O gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1003 TREPR_1004 TREPR_1004 TREPR_1004 3322984 3324237 + conserved hypothetical protein gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1004 TREPR_1005 TREPR_1005 TREPR_1005 3321404 3322855 - hypothetical protein identified by glimmer%3B putative gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1005 TREPR_1006 TREPR_1006 TREPR_1006 3320402 3320929 + putative lipoprotein gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1006 TREPR_1007 TREPR_1007 TREPR_1007 3320163 3320324 + transposase%2C IS4 family protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1007 TREPR_1009 TREPR_1009 TREPR_1009 3319764 3319880 + hypothetical protein identified by glimmer%3B putative gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1009 TREPR_1010 TREPR_1010 TREPR_1010 3318566 3319213 - transposase IS4 family protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1010 TREPR_1011 TREPR_1011 TREPR_1011 3317258 3318472 + transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1011 TREPR_1012 TREPR_1012 TREPR_1012 3316411 3317055 + hypothetical protein identified by glimmer%3B putative gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1012 TREPR_1013 TREPR_1013 TREPR_1013 3315328 3316092 + putative 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein identified by match to protein family HMM PF00037 gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1013 TREPR_1014 TREPR_1014 TREPR_1014 3314306 3315328 + putative dihydroflavonol 4-reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1014 TREPR_1015 TREPR_1015 TREPR_1015 3312629 3314323 - putative flagellar motor switch protein FliG identified by match to protein family HMM PF01706 gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1015 TREPR_1016 TREPR_1016 TREPR_1016 3309531 3312632 - peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193%3B match to protein family HMM PF08367 gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1016 TREPR_1017 TREPR_1017 TREPR_1017 3309248 3309499 - conserved hypothetical protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1017 TREPR_1018 TREPR_1018 TREPR_1018 3307594 3309042 - conserved hypothetical protein gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1018 TREPR_1019 TREPR_1019 TREPR_1019 3303793 3307449 - Snf2 family protein identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04434%3B match to protein family HMM PF04851 gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1019 TREPR_1020 TREPR_1020 TREPR_1020 3303518 3303775 + conserved hypothetical protein gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1020 TREPR_1021 TREPR_1021 TREPR_1021 3301894 3303249 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1021 TREPR_1022 TREPR_1022 TREPR_1022 3298890 3301736 - hypothetical protein identified by glimmer%3B putative gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1022 TREPR_1023 TREPR_1023 TREPR_1023 3298257 3298760 - transcription factor identified by match to protein family HMM PF02559 gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1023 TREPR_1024 TREPR_1024 TREPR_1024 3297495 3298247 - conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF01128 pseudogene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1024 TREPR_1025 TREPR_1025 ispF ispF 3297029 3297502 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1025 TREPR_1026 TREPR_1026 TREPR_1026 3296227 3297018 - endonuclease III protein identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730 gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1026 TREPR_1027 TREPR_1027 TREPR_1027 3293103 3296222 + hypothetical protein identified by glimmer%3B putative gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1027 TREPR_1028 TREPR_1028 TREPR_1028 3292432 3293097 + phosphoglycolate phosphatase identified by match to protein family HMM PF00702 gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1028 TREPR_1029 TREPR_1029 TREPR_1029 3291103 3292419 + conserved hypothetical protein gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1029 TREPR_1030 TREPR_1030 TREPR_1030 3290592 3291017 + class I peptide chain release factor gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1030 TREPR_1031 TREPR_1031 TREPR_1031 3289425 3290579 + putative tyrosinase identified by match to protein family HMM PF04151 gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1031 TREPR_1032 TREPR_1032 TREPR_1032 3286720 3289389 + hypothetical protein identified by glimmer%3B putative gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1032 TREPR_1033 TREPR_1033 metK metK 3285454 3286623 + methionine adenosyltransferase identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1033 TREPR_1035 TREPR_1035 TREPR_1035 3284561 3285229 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1035 TREPR_1036 TREPR_1036 TREPR_1036 3281834 3284452 - putative membrane protein gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1036 TREPR_1037 TREPR_1037 TREPR_1037 3281038 3281829 - conserved hypothetical protein gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1037 TREPR_1038 TREPR_1038 TREPR_1038 3279554 3281041 - conserved hypothetical protein gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1038 TREPR_1039 TREPR_1039 TREPR_1039 3279000 3279233 - transcriptional regulator%2C BadM/Rrf2 family gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1039 TREPR_1040 TREPR_1040 TREPR_1040 3278645 3278992 - helix-turn-helix domain protein identified by match to protein family HMM PF01381 gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1040 TREPR_1041 TREPR_1041 TREPR_1041 3277981 3278607 + putative NADH dehydrogenase/nad(p)h nitroreductase identified by match to protein family HMM PF00881 gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1041 TREPR_1042 TREPR_1042 TREPR_1042 3277673 3277840 - putative lipoprotein gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1042 TREPR_1043 TREPR_1043 TREPR_1043 3276934 3277092 - hypothetical protein identified by glimmer%3B putative gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1043 TREPR_1044 TREPR_1044 TREPR_1044 3275871 3276821 - conserved hypothetical protein identified by match to protein family HMM PF07751 gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1044 TREPR_1045 TREPR_1045 TREPR_1045 3275215 3275850 + hypothetical protein identified by glimmer%3B putative gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1045 TREPR_1046 TREPR_1046 TREPR_1046 3274122 3275171 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1046 TREPR_1047 TREPR_1047 TREPR_1047 3273504 3274073 + ThlR%2C HTH transcriptional regulator TetR/AcrR family identified by match to protein family HMM PF00440 gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1047 TREPR_1048 TREPR_1048 TREPR_1048 3273158 3273286 - hypothetical protein identified by glimmer%3B putative gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1048 TREPR_1049 TREPR_1049 TREPR_1049 3272840 3272968 - hypothetical protein identified by glimmer%3B putative gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1049 TREPR_1050 TREPR_1050 TREPR_1050 3271809 3272324 + thiol peroxidase identified by match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1050 TREPR_1052 TREPR_1052 TREPR_1052 3270572 3271651 - putative lipoprotein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1052 TREPR_1053 TREPR_1053 TREPR_1053 3270082 3270582 - major membrane immunogen gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1053 TREPR_1054 TREPR_1054 TREPR_1054 3266855 3270067 - sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1054 TREPR_1055 TREPR_1055 TREPR_1055 3266072 3266845 - ribosomal large subunit pseudouridine synthase C identified by match to protein family HMM PF00849 gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1055 TREPR_1057 TREPR_1057 TREPR_1057 3264103 3265707 + repeat protein identified by match to protein family HMM PF09479%3B match to protein family HMM TIGR02543 gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1057 TREPR_1058 TREPR_1058 TREPR_1058 3262454 3263671 + putative transcriptional regulator identified by match to protein family HMM PF01986%3B match to protein family HMM PF03749%3B match to protein family HMM TIGR00230 gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1058 TREPR_1059 TREPR_1059 TREPR_1059 3261541 3262461 + transporter identified by match to protein family HMM PF00892 gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1059 TREPR_1060 TREPR_1060 TREPR_1060 3261403 3261519 - hypothetical protein identified by glimmer%3B putative gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1060 TREPR_1061 TREPR_1061 TREPR_1061 3260832 3261392 - membrane protein%2C GPR1/FUN34/YaaH family identified by match to protein family HMM PF01184 gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1061 TREPR_1062 TREPR_1062 TREPR_1062 3259127 3260800 + Mg chelatase-like protein identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR00368 gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1062 TREPR_1063 TREPR_1063 TREPR_1063 3257419 3259002 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01085 gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1063 TREPR_1064 TREPR_1064 TREPR_1064 3256714 3257361 + conserved hypothetical protein gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1064 TREPR_1065 TREPR_1065 TREPR_1065 3255539 3256567 + conserved hypothetical protein gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1065 TREPR_1066 TREPR_1066 murD murD 3254033 3255478 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01087 gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1066 TREPR_1067 TREPR_1067 TREPR_1067 3252965 3254020 - putative lysyl-tRNA synthetase (Lysine--tRNA ligase)(LysRS) (GX) identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587 gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1067 TREPR_1068 TREPR_1068 TREPR_1068 3252510 3252956 + cyclic nucleotide-binding protein identified by match to protein family HMM PF00027 gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1068 TREPR_1069 TREPR_1069 ychF ychF 3251370 3252497 + GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1069 TREPR_1070 TREPR_1070 TREPR_1070 3247034 3251158 - phosphoribosylformylglycinamidine synthase identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01857 gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1070 TREPR_1071 TREPR_1071 TREPR_1071 3244140 3246974 + surface antigen BspA gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1071 TREPR_1072 TREPR_1072 TREPR_1072 3242028 3244127 + putative lipoprotein gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1072 TREPR_1073 TREPR_1073 TREPR_1073 3241864 3242028 + hypothetical protein identified by glimmer%3B putative gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1073 TREPR_1075 TREPR_1075 serS serS 3240328 3241611 - serine--tRNA ligase identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414 gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1075 TREPR_1076 TREPR_1076 TREPR_1076 3239984 3240328 - histidine triad nucleotide-binding protein 1 identified by match to protein family HMM PF01230%3B adenosine 5'-monophosphoramidase%3B protein kinase c inhibitor 1%3B protein kinasec-interacting protein 1%3B pkci-1%3B 17 kda inhibitor of protein kinasec gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1076 TREPR_1078 TREPR_1078 TREPR_1078 3239405 3239806 + putative CrcB protein identified by match to protein family HMM PF02537%3B match to protein family HMM TIGR00494 gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1078 TREPR_1079 TREPR_1079 gidA gidA 3237517 3239424 + tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136 gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1079 TREPR_1080 TREPR_1080 trmE trmE 3236035 3237513 + tRNA modification GTPase TrmE identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650 gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1080 TREPR_1081 TREPR_1081 TREPR_1081 3234980 3236032 + membrane-associated phospholipid phosphatase identified by match to protein family HMM PF01569 gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1081 TREPR_1082 TREPR_1082 TREPR_1082 3234816 3234947 + hypothetical protein identified by glimmer%3B putative gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1082 TREPR_1083 TREPR_1083 TREPR_1083 3234117 3234803 + putative lipoprotein gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1083 TREPR_1084 TREPR_1084 TREPR_1084 3231799 3234069 + putative lipoprotein gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1084 TREPR_1085 TREPR_1085 fba fba 3230677 3231675 + fructose-1%2C6-bisphosphate aldolase%2C class II identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01859 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1085 TREPR_1087 TREPR_1087 TREPR_1087 3229589 3230515 - hypothetical protein identified by glimmer%3B putative gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1087 TREPR_1088 TREPR_1088 TREPR_1088 3228715 3229446 - outer membrane protein gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1088 TREPR_1089 TREPR_1089 TREPR_1089 3227980 3228702 - flagellar filament outer layer protein identified by match to protein family HMM PF04620 gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1089 TREPR_1090 TREPR_1090 TREPR_1090 3227268 3227846 - conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1090 TREPR_1091 TREPR_1091 TREPR_1091 3226012 3227220 + conserved hypothetical protein gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1091 TREPR_1092 TREPR_1092 TREPR_1092 3223987 3224934 - conserved hypothetical protein gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1092 TREPR_1093 TREPR_1093 csm1 csm1 3221776 3223977 - crispr-associated protein%2C Csm1 family identified by match to protein family HMM TIGR02578 gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1093 TREPR_1094 TREPR_1094 TREPR_1094 3221279 3221770 - putative crispr-associated protein%2C Csm2 family identified by match to protein family HMM TIGR01870 gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1094 TREPR_1095 TREPR_1095 csm3 csm3 3220575 3221249 - crispr-associated ramp protein%2C Csm3 family identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR02582 gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1095 TREPR_1096 TREPR_1096 TREPR_1096 3219687 3220565 - conserved hypothetical protein gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1096 TREPR_1097 TREPR_1097 TREPR_1097 3218510 3219670 - hypothetical protein identified by glimmer%3B putative gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1097 TREPR_1098 TREPR_1098 TREPR_1098 3217182 3218513 - putative crispr-associated protein%2C family identified by match to protein family HMM PF09530%3B match to protein family HMM TIGR02221%3B match to protein family HMM TIGR02549 gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1098 TREPR_1099 TREPR_1099 TREPR_1099 3216835 3217158 + conserved hypothetical protein gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1099 TREPR_1100 TREPR_1100 TREPR_1100 3216617 3216823 + conserved hypothetical protein identified by match to protein family HMM PF03681 gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1100 TREPR_1101 TREPR_1101 uvrC uvrC 3214451 3216496 + excinuclease ABC%2C C subunit identified by match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM PF08459%3B match to protein family HMM TIGR00194 gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1101 TREPR_1102 TREPR_1102 TREPR_1102 3212665 3214467 - fibronectin type III domain protein identified by match to protein family HMM PF00041 gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1102 TREPR_1103 TREPR_1103 TREPR_1103 3211103 3212668 - putative tetratricopeptide TPR_2 identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1103 TREPR_1104 TREPR_1104 TREPR_1104 3210253 3211110 - HDOD domain protein identified by match to protein family HMM PF08668 gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1104 TREPR_1105 TREPR_1105 TREPR_1105 3209325 3210128 - beta-lactamase domain protein gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1105 TREPR_1106 TREPR_1106 TREPR_1106 3208830 3209279 - hypothetical protein identified by glimmer%3B putative gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1106 TREPR_1107 TREPR_1107 TREPR_1107 3207660 3208817 + peptidase%2C M24 family identified by match to protein family HMM PF00557 gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1107 TREPR_1108 TREPR_1108 TREPR_1108 3206617 3207663 + L-allo-threonine aldolase (L-allo-TA) (L-allo-threonineacetaldehyde-lyase) identified by match to protein family HMM PF01212 gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1108 TREPR_1109 TREPR_1109 TREPR_1109 3205298 3206416 - aldo/keto reductase identified by match to protein family HMM PF00248 gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1109 TREPR_1110 TREPR_1110 TREPR_1110 3204968 3205240 - hypothetical protein identified by glimmer%3B putative gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1110 TREPR_1111 TREPR_1111 TREPR_1111 3204570 3204755 - putative plasmid stability protein gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1111 TREPR_1112 TREPR_1112 TREPR_1112 3203836 3204054 - hypothetical protein identified by glimmer%3B putative gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1112 TREPR_1113 TREPR_1113 TREPR_1113 3203606 3203863 - hypothetical protein identified by glimmer%3B putative gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1113 TREPR_1114 TREPR_1114 TREPR_1114 3202797 3203354 + conserved hypothetical protein gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1114 TREPR_1116 TREPR_1116 glmS glmS 3200906 3202747 + glutamine-fructose-6-phosphate transaminase (isomerizing) identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135 gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1116 TREPR_1117 TREPR_1117 TREPR_1117 3200552 3200896 + cupin 2%2C conserved barrel identified by match to protein family HMM PF07883 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1117 TREPR_1118 TREPR_1118 TREPR_1118 3199445 3200464 - MscS Mechanosensitive ion channel identified by match to protein family HMM PF00924 gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1118 TREPR_1119 TREPR_1119 fliL_2 fliL_2 3198879 3199442 - flagellar basal body-associated protein FliL identified by match to protein family HMM PF03748 gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1119 TREPR_1120 TREPR_1120 TREPR_1120 3196603 3198747 - putative lipoprotein gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1120 TREPR_1121 TREPR_1121 TREPR_1121 3194547 3196250 - GH3 auxin-responsive promoter superfamily identified by match to protein family HMM PF03321 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1121 TREPR_1122 TREPR_1122 TREPR_1122 3193266 3194456 - extracellular ligand-binding receptor identified by match to protein family HMM PF01094 gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1122 TREPR_1123 TREPR_1123 TREPR_1123 3192346 3193245 - inner-membrane translocator identified by match to protein family HMM PF02653 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1123 TREPR_1124 TREPR_1124 TREPR_1124 3191349 3192344 - high-affinity branched-chain amino acid transport system permease protein LivM identified by match to protein family HMM PF02653 gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1124 TREPR_1125 TREPR_1125 TREPR_1125 3190553 3191359 - branched-chain amino acid ABC transporter identified by match to protein family HMM PF00005 gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1125 TREPR_1126 TREPR_1126 TREPR_1126 3189856 3190560 - branched-chain amino acid ABC transporter identified by match to protein family HMM PF00005 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1126 TREPR_1127 TREPR_1127 TREPR_1127 3189210 3189854 - CBS domain protein identified by match to protein family HMM PF00571 gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1127 TREPR_1128 TREPR_1128 TREPR_1128 3188317 3189162 + hemin import ATP-binding protein HmuV identified by match to protein family HMM PF00005 gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1128 TREPR_1129 TREPR_1129 TREPR_1129 3187289 3188323 + iron compounds ABC transporter%2C permease protein identified by match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1129 TREPR_1130 TREPR_1130 TREPR_1130 3186142 3187281 + periplasmic binding protein identified by match to protein family HMM PF01497 gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1130 TREPR_1131 TREPR_1131 TREPR_1131 3185309 3186022 + TonB family C- domain protein identified by match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1131 TREPR_1132 TREPR_1132 TREPR_1132 3184276 3185040 - conserved hypothetical protein gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1132 TREPR_1133 TREPR_1133 TREPR_1133 3182226 3184259 + putative TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1133 TREPR_1134 TREPR_1134 TREPR_1134 3180348 3182177 + fibronectin type III domain protein identified by match to protein family HMM PF00041 gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1134 TREPR_1135 TREPR_1135 TREPR_1135 3177839 3180271 + Ig domain protein%2C group 2 domain protein identified by match to protein family HMM PF02368 gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1135 TREPR_1136 TREPR_1136 TREPR_1136 3175635 3177710 + putative lipoprotein gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1136 TREPR_1137 TREPR_1137 TREPR_1137 3177664 3177795 - hypothetical protein identified by glimmer%3B putative gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1137 TREPR_1138 TREPR_1138 TREPR_1138 3173864 3175609 + putative lipoprotein gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1138 TREPR_1139 TREPR_1139 TREPR_1139 3172886 3173587 - methyltransferase type 11 identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1139 TREPR_1140 TREPR_1140 TREPR_1140 3172176 3172889 - cobalamin synthesis protein%2C P47K gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1140 TREPR_1141 TREPR_1141 TREPR_1141 3171311 3172183 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1141 TREPR_1142 TREPR_1142 TREPR_1142 3170262 3171314 - conserved hypothetical protein gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1142 TREPR_1143 TREPR_1143 TREPR_1143 3169236 3170240 - molybdate-binding protein identified by match to protein family HMM PF05930%3B match to protein family HMM TIGR01764 gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1143 TREPR_1144 TREPR_1144 TREPR_1144 3168524 3168910 - translocase identified by match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1144 TREPR_1145 TREPR_1145 TREPR_1145 3168035 3168508 - phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 domain protein identified by match to protein family HMM PF00359 gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1145 TREPR_1146 TREPR_1146 TREPR_1146 3167597 3168010 - hypothetical protein identified by glimmer%3B putative gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1146 TREPR_1147 TREPR_1147 TREPR_1147 3166518 3167597 - hypothetical protein identified by glimmer%3B putative gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1147 TREPR_1148 TREPR_1148 TREPR_1148 3164420 3166483 - V-type ATP synthase subunit I 2 (V-type ATPase subunit I2) identified by match to protein family HMM PF01496 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1148 TREPR_1149 TREPR_1149 TREPR_1149 3164106 3164417 - H-ATPase-like protein identified by match to protein family HMM PF00137 gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1149 TREPR_1150 TREPR_1150 TREPR_1150 3163762 3164106 - putative V-type ATPase%2C subunit F gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1150 TREPR_1151 TREPR_1151 TREPR_1151 3163042 3163743 - putative V-type ATPase%2C subunit E gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1151 TREPR_1152 TREPR_1152 TREPR_1152 3161231 3163045 - V-type sodium ATP synthase%2C A subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1152 TREPR_1153 TREPR_1153 TREPR_1153 3159743 3161200 - V-type sodium ATP synthase%2C B subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874 gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1153 TREPR_1154 TREPR_1154 TREPR_1154 3158712 3159626 - hypothetical protein identified by glimmer%3B putative gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1154 TREPR_1155 TREPR_1155 TREPR_1155 3158109 3158525 - conserved hypothetical protein gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1155 TREPR_1156 TREPR_1156 TREPR_1156 3157925 3158053 - hypothetical protein identified by glimmer%3B putative gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1156 TREPR_1157 TREPR_1157 TREPR_1157 3157271 3157897 - conserved hypothetical protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1157 TREPR_1158 TREPR_1158 TREPR_1158 3157113 3157250 - hypothetical protein identified by glimmer%3B putative gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1158 TREPR_1159 TREPR_1159 TREPR_1159 3156841 3157095 + hypothetical protein identified by glimmer%3B putative gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1159 TREPR_1161 TREPR_1161 TREPR_1161 3156555 3156701 - hypothetical protein identified by glimmer%3B putative gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1161 TREPR_1162 TREPR_1162 TREPR_1162 3156051 3156464 + toxin of toxin-antitoxin gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1162 TREPR_1163 TREPR_1163 TREPR_1163 3155818 3156054 + conserved domain protein identified by match to protein family HMM TIGR01552 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1163 TREPR_1164 TREPR_1164 TREPR_1164 3155514 3155762 + conserved hypothetical protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1164 TREPR_1165 TREPR_1165 fliS fliS 3154821 3155282 + flagellar protein FliS identified by match to protein family HMM PF02561%3B match to protein family HMM TIGR00208 gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1165 TREPR_1166 TREPR_1166 TREPR_1166 3154027 3154710 + conserved hypothetical protein identified by match to protein family HMM PF04474 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1166 TREPR_1167 TREPR_1167 TREPR_1167 3153043 3153927 - hypothetical protein identified by glimmer%3B putative gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1167 TREPR_1168 TREPR_1168 TREPR_1168 3151299 3152936 - conserved hypothetical protein gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1168 TREPR_1169 TREPR_1169 rluC rluC 3150585 3151271 + ribosomal large subunit pseudouridine synthase family protein identified by match to protein family HMM PF00849 gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1169 TREPR_1170 TREPR_1170 TREPR_1170 3149405 3150583 + beta-N-acetylhexosaminidase identified by match to protein family HMM PF00933 gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1170 TREPR_1171 TREPR_1171 TREPR_1171 3147887 3149371 - putative fibronectin/fibrinogen-binding protein identified by match to protein family HMM PF05670%3B match to protein family HMM PF05833 gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1171 TREPR_1172 TREPR_1172 TREPR_1172 3146937 3147794 - conserved hypothetical protein identified by match to protein family HMM PF01875 gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1172 TREPR_1173 TREPR_1173 TREPR_1173 3145184 3146890 + long-chain acyl-CoA synthetase identified by match to protein family HMM PF00501 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1173 TREPR_1174 TREPR_1174 TREPR_1174 3144327 3145097 - putative lipoprotein gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1174 TREPR_1175 TREPR_1175 TREPR_1175 3143677 3144228 + putative heat shock protein identified by match to protein family HMM PF00011 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1175 TREPR_1176 TREPR_1176 ackA ackA 3142145 3143482 + acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1176 TREPR_1177 TREPR_1177 TREPR_1177 3140872 3142041 + mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) identified by match to protein family HMM PF00483 gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1177 TREPR_1178 TREPR_1178 def def 3140069 3140557 - peptide deformylase identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1178 TREPR_1179 TREPR_1179 fmt fmt 3139018 3140067 - methionyl-tRNA formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1179 TREPR_1180 TREPR_1180 TREPR_1180 3137923 3139008 - pasta domain protein identified by match to protein family HMM PF03793 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1180 TREPR_1181 TREPR_1181 TREPR_1181 3137664 3137894 - hypothetical protein identified by glimmer%3B putative gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1181 TREPR_1182 TREPR_1182 TREPR_1182 3135904 3137610 + ATP-dependent DNA helicase%2C RecQ family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00614 gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1182 TREPR_1183 TREPR_1183 TREPR_1183 3135400 3135813 + plasmid stability protein identified by match to protein family HMM PF01850 gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1183 TREPR_1184 TREPR_1184 TREPR_1184 3135137 3135403 + prevent-host-death family protein identified by match to protein family HMM PF02604%3B match to protein family HMM TIGR01552 gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1184 TREPR_1185 TREPR_1185 TREPR_1185 3133839 3135044 + LL-diaminopimelate aminotransferase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR03542 gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1185 TREPR_1186 TREPR_1186 TREPR_1186 3132554 3133825 + diaminopimelate decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784 gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1186 TREPR_1187 TREPR_1187 TREPR_1187 3132410 3132550 + hypothetical protein identified by glimmer%3B putative gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1187 TREPR_1189 TREPR_1189 TREPR_1189 3129627 3132245 - conserved hypothetical protein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1189 TREPR_1190 TREPR_1190 TREPR_1190 3129480 3129617 + hypothetical protein identified by glimmer%3B putative gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1190 TREPR_1191 TREPR_1191 TREPR_1191 3128553 3129398 + conserved hypothetical protein gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1191 TREPR_1192 TREPR_1192 TREPR_1192 3126092 3128560 + ATP-dependent DNA helicase PcrA identified by match to protein family HMM PF00580 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1192 TREPR_1193 TREPR_1193 TREPR_1193 3124555 3126021 + conserved hypothetical protein identified by match to protein family HMM PF00919%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1193 TREPR_1194 TREPR_1194 TREPR_1194 3123428 3124552 + conserved hypothetical protein gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1194 TREPR_1195 TREPR_1195 TREPR_1195 3122655 3123356 + outer membrane lipoprotein carrier protein LolA identified by match to protein family HMM PF03548 gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1195 TREPR_1196 TREPR_1196 TREPR_1196 3122258 3122590 - toxin-antitoxin system%2C antitoxin component%2C MazF family identified by match to protein family HMM PF04014 gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1196 TREPR_1197 TREPR_1197 TREPR_1197 3121941 3122258 - toxin-antitoxin system%2C toxin component%2C MazF family identified by match to protein family HMM PF02452 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1197 TREPR_1198 TREPR_1198 TREPR_1198 3121306 3121785 - 5-nitroimidazole antibiotic resistance protein identified by match to protein family HMM PF01243 gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1198 TREPR_1199 TREPR_1199 TREPR_1199 3119461 3121299 + trypsin domain/PDZ domain protein identified by match to protein family HMM PF00089 gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1199 TREPR_1200 TREPR_1200 TREPR_1200 3117722 3119455 + hypothetical protein identified by glimmer%3B putative gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1200 TREPR_1201 TREPR_1201 TREPR_1201 3115809 3117722 + cell division protease FtsH identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241 gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1201 TREPR_1202 TREPR_1202 TREPR_1202 3114392 3115819 + tRNA(Ile)-lysidine synthase identified by match to protein family HMM PF01171%3B match to protein family HMM TIGR02432 gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1202 TREPR_1203 TREPR_1203 TREPR_1203 3113816 3114274 - transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1203 TREPR_1204 TREPR_1204 TREPR_1204 3113399 3113632 - conserved hypothetical protein gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1204 TREPR_1205 TREPR_1205 TREPR_1205 3111990 3113249 - permease identified by match to protein family HMM PF07690 gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1205 TREPR_1206 TREPR_1206 TREPR_1206 3111277 3111921 + ribosomal protein L25%2C Ctc-form identified by match to protein family HMM PF01386%3B match to protein family HMM TIGR00731 gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1206 TREPR_1208 TREPR_1208 TREPR_1208 3110726 3111007 + putative septation protein SpoVG identified by match to protein family HMM PF04026 gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1208 TREPR_1209 TREPR_1209 ispE ispE 3109628 3110683 + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544%3B match to protein family HMM TIGR00154 gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1209 TREPR_1210 TREPR_1210 TREPR_1210 3109463 3109606 - hypothetical protein identified by glimmer%3B putative gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1210 TREPR_1211 TREPR_1211 TREPR_1211 3108816 3109466 - probable N-glycosylase/DNA lyase gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1211 TREPR_1212 TREPR_1212 TREPR_1212 3107983 3108819 - conserved hypothetical protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1212 TREPR_1213 TREPR_1213 TREPR_1213 3107280 3107846 - 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1213 TREPR_1214 TREPR_1214 TREPR_1214 3106329 3107207 - putative membrane protein identified by match to protein family HMM PF02588 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1214 TREPR_1215 TREPR_1215 TREPR_1215 3105582 3106232 - V-type ATPase%2C D subunit identified by match to protein family HMM PF01813%3B match to protein family HMM TIGR00309 gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1215 TREPR_1216 TREPR_1216 TREPR_1216 3105100 3105585 - putative universal stress protein family identified by match to protein family HMM PF00582 gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1216 TREPR_1217 TREPR_1217 TREPR_1217 3104674 3105075 - hypothetical protein identified by glimmer%3B putative gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1217 TREPR_1218 TREPR_1218 TREPR_1218 3103905 3104681 - DnaJ domain protein identified by match to protein family HMM PF00226 gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1218 TREPR_1219 TREPR_1219 map map 3103102 3103896 - methionine aminopeptidase%2C type I identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1219 TREPR_1220 TREPR_1220 TREPR_1220 3101502 3103013 - putative serine protease MucD identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1220 TREPR_1221 TREPR_1221 TREPR_1221 3100112 3101221 - NeuB family protein identified by match to protein family HMM PF03102%3B match to protein family HMM PF08666 gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1221 TREPR_1222 TREPR_1222 TREPR_1222 3099398 3099901 - putative addiction module antidote protein%2C HigA family identified by match to protein family HMM PF01381%3B match to protein family HMM TIGR02607 gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1222 TREPR_1223 TREPR_1223 moaC moaC 3098566 3099096 - molybdenum cofactor biosynthesis protein C identified by match to protein family HMM PF01967%3B match to protein family HMM TIGR00581 gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1223 TREPR_1224 TREPR_1224 moaA moaA 3097556 3098560 - molybdenum cofactor biosynthesis protein A identified by match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666 gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1224 TREPR_1225 TREPR_1225 TREPR_1225 3097125 3097553 - MOSC domain protein identified by match to protein family HMM PF03473 gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1225 TREPR_1226 TREPR_1226 TREPR_1226 3096638 3097135 - molybdenum cofactor synthesis domain protein identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177 gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1226 TREPR_1227 TREPR_1227 TREPR_1227 3095568 3096635 + PfoR protein gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1227 TREPR_1228 TREPR_1228 TREPR_1228 3094223 3095431 - methionine gamma-lyase (L-methioninase) identified by match to protein family HMM PF01053 gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1228 TREPR_1229 TREPR_1229 TREPR_1229 3093636 3094151 - hypothetical protein identified by glimmer%3B putative gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1229 TREPR_1230 TREPR_1230 atpB atpB 3092852 3093574 - ATP synthase F0%2C A subunit identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131 gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1230 TREPR_1231 TREPR_1231 atpE atpE 3092466 3092696 - ATP synthase F0%2C C subunit identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260 gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1231 TREPR_1232 TREPR_1232 TREPR_1232 3091951 3092454 - F0F1-type ATP synthase b subunit identified by match to protein family HMM PF00430 gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1232 TREPR_1233 TREPR_1233 atpH atpH 3091385 3091951 - ATP synthase F1%2C delta subunit identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145 gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1233 TREPR_1234 TREPR_1234 atpA atpA 3089889 3091391 - ATP synthase F1%2C alpha subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962 gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1234 TREPR_1235 TREPR_1235 atpG atpG 3088993 3089880 - ATP synthase F1%2C gamma subunit identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146 gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1235 TREPR_1236 TREPR_1236 atpD atpD 3087552 3088934 - ATP synthase F1%2C beta subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039 gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1236 TREPR_1237 TREPR_1237 atpC atpC 3087118 3087543 - ATP synthase F1%2C epsilon subunit identified by match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1237 TREPR_1238 TREPR_1238 TREPR_1238 3086482 3086766 - prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1238 TREPR_1239 TREPR_1239 TREPR_1239 3086177 3086485 - plasmid stabilization system identified by match to protein family HMM PF05016 gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1239 TREPR_1240 TREPR_1240 TREPR_1240 3085851 3086096 + transcriptional regulator gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1240 TREPR_1242 TREPR_1242 TREPR_1242 3084517 3085089 - putative lipoprotein gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1242 TREPR_1243 TREPR_1243 TREPR_1243 3084153 3084473 - hypothetical protein identified by glimmer%3B putative gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1243 TREPR_1244 TREPR_1244 TREPR_1244 3083782 3084093 - nucleotidyltransferase identified by match to protein family HMM PF01909 gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1244 TREPR_1245 TREPR_1245 TREPR_1245 3083514 3083774 - aminoglycoside adenyltransferase gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1245 TREPR_1246 TREPR_1246 TREPR_1246 3082737 3083489 - putative NADH dehydrogenase/nad(p)h nitroreductase identified by match to protein family HMM PF00881 gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1246 TREPR_1247 TREPR_1247 TREPR_1247 3081335 3082711 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1247 TREPR_1248 TREPR_1248 TREPR_1248 3080832 3080972 + hypothetical protein identified by glimmer%3B putative gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1248 TREPR_1249 TREPR_1249 TREPR_1249 3078087 3080771 - sensor histidine kinase with ATPase domain%2C two fused identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1249 TREPR_1250 TREPR_1250 TREPR_1250 3074765 3078013 - sensor protein GacS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02743%3B overlaps another CDS with the same product name gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1250 TREPR_1251 TREPR_1251 TREPR_1251 3071865 3074768 - sensor protein GacS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B overlaps another CDS with the same product name gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1251 TREPR_1252 TREPR_1252 TREPR_1252 3070723 3071868 - membrane protein%2C Bmp family identified by match to protein family HMM PF02608 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1252 TREPR_1253 TREPR_1253 TREPR_1253 3069572 3070711 - membrane protein%2C Bmp family identified by match to protein family HMM PF02608 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1253 TREPR_1254 TREPR_1254 TREPR_1254 3066354 3069575 - sensor protein GacS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1254 TREPR_1255 TREPR_1255 TREPR_1255 3063553 3066357 - sensory box sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1255 TREPR_1256 TREPR_1256 TREPR_1256 3059292 3063527 - hybrid sensory kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF07494 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1256 TREPR_1257 TREPR_1257 TREPR_1257 3057971 3059302 - putative adenylate cyclase 2 (ATP pyrophosphate-lyase 2) (Adenylylcyclase 2) (AC2) identified by match to protein family HMM PF00072%3B match to protein family HMM PF00211 gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1257 TREPR_1258 TREPR_1258 TREPR_1258 3055100 3057892 - sensor protein GacS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1258 TREPR_1259 TREPR_1259 TREPR_1259 3054084 3055103 - conserved hypothetical protein identified by match to protein family HMM PF00781%3B match to protein family HMM TIGR00147 gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1259 TREPR_1260 TREPR_1260 TREPR_1260 3051827 3054091 - sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1260 TREPR_1261 TREPR_1261 TREPR_1261 3050506 3051837 - adenylate/guanylate cyclase catalytic domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00211%3B match to protein family HMM PF07719 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1261 TREPR_1262 TREPR_1262 TREPR_1262 3049186 3050436 + HipA domain protein identified by match to protein family HMM PF07804%3B match to protein family HMM PF07805 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1262 TREPR_1263 TREPR_1263 TREPR_1263 3048839 3049186 + transcriptional regulator%2C XRE family identified by match to protein family HMM PF01381 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1263 TREPR_1265 TREPR_1265 etfB etfB 3047845 3048675 - electron transfer flavoprotein%2C beta subunit identified by match to protein family HMM PF01012 gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1265 TREPR_1266 TREPR_1266 etfA etfA 3046750 3047757 - electron transfer flavoprotein%2C alpha subunit identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1266 TREPR_1267 TREPR_1267 acd acd 3045001 3046737 - acyl-CoA dehydrogenase family protein identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF08028 gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1267 TREPR_1268 TREPR_1268 accA_1 accA_1 3044064 3044993 + acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1268 TREPR_1269 TREPR_1269 accD_1 accD_1 3043243 3044067 + acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit identified by match to protein family HMM TIGR00515 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1269 TREPR_1270 TREPR_1270 TREPR_1270 3041922 3043253 + biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786 gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1270 TREPR_1271 TREPR_1271 TREPR_1271 3041308 3041901 + acetyl-CoA carboxylase%2C biotin carboxyl carrier protein identified by match to protein family HMM PF00364 gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1271 TREPR_1272 TREPR_1272 TREPR_1272 3040348 3041268 + trans-2-enoyl-CoA reductase%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF07055 pseudogene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1272 TREPR_1273 TREPR_1273 TREPR_1273 3039791 3040318 + trans-2-enoyl-CoA reductase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1273 TREPR_1274 TREPR_1274 TREPR_1274 3038438 3039790 + D12 class N6 adenine-specific DNA methyltransferase identified by match to protein family HMM PF02086 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1274 TREPR_1276 TREPR_1276 TREPR_1276 3037422 3037841 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ identified by match to protein family HMM PF07977 gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1276 TREPR_1277 TREPR_1277 fabF fabF 3036138 3037403 + 3-oxoacyl-[acyl-carrier-protein] synthase II identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1277 TREPR_1278 TREPR_1278 fabG fabG 3035390 3036124 + 3-oxoacyl-[acyl-carrier-protein] reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM PF08659%3B match to protein family HMM TIGR01830 gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1278 TREPR_1279 TREPR_1279 TREPR_1279 3034392 3035366 + malonyl CoA-acyl carrier protein transacylase (MCT) identified by match to protein family HMM PF00698 gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1279 TREPR_1280 TREPR_1280 TREPR_1280 3033334 3034398 + beta-ketoacyl-acyl-carrier-protein synthase III identified by match to protein family HMM PF08541%3B match to protein family HMM PF08545%3B match to protein family HMM TIGR00747 gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1280 TREPR_1281 TREPR_1281 TREPR_1281 3032197 3032973 - gamma-glutamyl-gamma-aminobutyrate hydrolase (gamma-glu-gaba hydrolase) identified by match to protein family HMM PF07722 gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1281 TREPR_1282 TREPR_1282 TREPR_1282 3031424 3032149 - putative membrane protein gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1282 TREPR_1283 TREPR_1283 TREPR_1283 3030649 3031413 - putative membrane protein gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1283 TREPR_1284 TREPR_1284 TREPR_1284 3029211 3030647 - aminobenzoyl-glutamate utilization protein B identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1284 TREPR_1285 TREPR_1285 TREPR_1285 3028610 3028804 - hypothetical protein identified by glimmer%3B putative gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1285 TREPR_1286 TREPR_1286 citD_2 citD_2 3028245 3028511 - citrate lyase acyl carrier protein identified by match to protein family HMM PF04953%3B match to protein family HMM TIGR01608 gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1286 TREPR_1287 TREPR_1287 TREPR_1287 3027369 3028244 - citrate lyase subunit beta (Citrase beta chain) (Citrate(pro-3S)-lyase subunit beta) (Citryl-CoA lyase subunit) identified by match to protein family HMM PF03328 gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1287 TREPR_1288 TREPR_1288 citF_2 citF_2 3025967 3027376 - citrate lyase%2C alpha subunit identified by match to protein family HMM PF04223%3B match to protein family HMM TIGR01584 gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1288 TREPR_1289 TREPR_1289 citC citC 3024882 3025970 - [citrate (pro-3S)-lyase] ligase identified by match to protein family HMM PF00583%3B match to protein family HMM PF08218%3B match to protein family HMM TIGR00124%3B match to protein family HMM TIGR00125 gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1289 TREPR_1290 TREPR_1290 TREPR_1290 3022690 3024843 + Sel1 domain protein identified by match to protein family HMM PF08238 gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1290 TREPR_1291 TREPR_1291 TREPR_1291 3019425 3022697 + helicase domain/SNF2 family domain protein identified by match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1291 TREPR_1292 TREPR_1292 TREPR_1292 3018879 3019232 + meiotic expression up-regulated protein 1/2 gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1292 TREPR_1293 TREPR_1293 TREPR_1293 3018215 3018919 + hypothetical protein identified by glimmer%3B putative gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1293 TREPR_1295 TREPR_1295 TREPR_1295 3015505 3017775 + putative von Willebrand factor%2C type A gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1295 TREPR_1296 TREPR_1296 TREPR_1296 3013004 3015493 + putative lipoprotein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1296 TREPR_1297 TREPR_1297 TREPR_1297 3011133 3012992 + putative von Willebrand factor%2C type A gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1297 TREPR_1298 TREPR_1298 TREPR_1298 3009647 3010636 - transcriptional regulator%2C GntR family protein identified by match to protein family HMM PF00392 gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1298 TREPR_1299 TREPR_1299 TREPR_1299 3008198 3009643 + aminobenzoyl-glutamate utilization protein B identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1299 TREPR_1301 TREPR_1301 mamA mamA 3007504 3007920 - methylaspartate mutase%2C S subunit identified by match to protein family HMM PF02310%3B match to protein family HMM TIGR01501 gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1301 TREPR_1302 TREPR_1302 TREPR_1302 3006104 3007498 - MutL protein identified by match to protein family HMM TIGR01319 gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1302 TREPR_1303 TREPR_1303 TREPR_1303 3004672 3006120 - methylaspartate mutase%2C E subunit identified by match to protein family HMM PF06368%3B match to protein family HMM TIGR01503 gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1303 TREPR_1304 TREPR_1304 TREPR_1304 3003412 3004662 - methylaspartate ammonia-lyase identified by match to protein family HMM PF05034%3B match to protein family HMM PF07476%3B match to protein family HMM TIGR01502 gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1304 TREPR_1305 TREPR_1305 TREPR_1305 3002418 3003353 - conserved hypothetical protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1305 TREPR_1306 TREPR_1306 ttdA ttdA 3001524 3002363 - fumarate hydratase identified by match to protein family HMM PF05681%3B match to protein family HMM TIGR00722 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1306 TREPR_1307 TREPR_1307 fumB fumB 3000952 3001524 - fumarate hydratase%2C class I identified by match to protein family HMM PF05683%3B match to protein family HMM TIGR00723 gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1307 TREPR_1308 TREPR_1308 TREPR_1308 2999469 3000914 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) identified by match to protein family HMM PF01874%3B match to protein family HMM PF03802%3B match to protein family HMM TIGR03124 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1308 TREPR_1309 TREPR_1309 TREPR_1309 2998425 2999306 + 2-hydroxy-3-oxopropionate reductase identified by match to protein family HMM PF03446%3B match to protein family HMM TIGR01505 gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1309 TREPR_1310 TREPR_1310 TREPR_1310 2997476 2998411 + transketolase C- section identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1310 TREPR_1311 TREPR_1311 TREPR_1311 2996637 2997473 + transketolase identified by match to protein family HMM PF00456 gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1311 TREPR_1312 TREPR_1312 TREPR_1312 2995369 2996586 + putative methyltransferase CmuC gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1312 TREPR_1313 TREPR_1313 TREPR_1313 2994041 2995342 + trap dicarboxylate transporter%2C dctm subunit identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR00786 gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1313 TREPR_1314 TREPR_1314 TREPR_1314 2993426 2994028 + putative tripartite ATP-independent periplasmic transporter%2C DctQ component identified by match to protein family HMM PF04290 gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1314 TREPR_1315 TREPR_1315 TREPR_1315 2992327 2993397 + putative C4-dicarboxylate-binding protein identified by match to protein family HMM PF03480%3B match to protein family HMM TIGR00787 gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1315 TREPR_1316 TREPR_1316 TREPR_1316 2991478 2992296 + AP endonuclease%2C family 2 identified by match to protein family HMM PF01261 gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1316 TREPR_1317 TREPR_1317 TREPR_1317 2990588 2991319 - putative GntR domain protein identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1317 TREPR_1318 TREPR_1318 TREPR_1318 2990002 2990499 + hypothetical protein identified by glimmer%3B putative gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1318 TREPR_1321 TREPR_1321 TREPR_1321 2988772 2989596 - 2-hydroxy-6-oxo-6-phenylhexa-2%2C4-dienoate hydrolase identified by match to protein family HMM PF00561 gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1321 TREPR_1322 TREPR_1322 TREPR_1322 2987986 2988768 - 2-keto-4-pentenoate hydratase (2-hydroxypentadienoic acidhydratase) identified by match to protein family HMM PF01689 gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1322 TREPR_1323 TREPR_1323 TREPR_1323 2987049 2987915 - acetaldehyde dehydrogenase (acetylating) identified by match to protein family HMM PF01118%3B match to protein family HMM PF09290%3B match to protein family HMM TIGR03215 gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1323 TREPR_1324 TREPR_1324 dmpG dmpG 2986040 2987047 - 4-hydroxy-2-oxovalerate aldolase identified by match to protein family HMM PF00682%3B match to protein family HMM PF07836%3B match to protein family HMM TIGR03217 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1324 TREPR_1325 TREPR_1325 TREPR_1325 2985738 2986022 - SalB identified by match to protein family HMM PF00111 gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1325 TREPR_1326 TREPR_1326 TREPR_1326 2984784 2985710 - catechol 2%2C3 dioxygenase identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR03211 gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1326 TREPR_1327 TREPR_1327 TREPR_1327 2984646 2984771 + hypothetical protein identified by glimmer%3B putative gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1327 TREPR_1328 TREPR_1328 TREPR_1328 2982094 2984595 - beta-1%2C4-xylosidase with transcriptional regulator of AraC/XylS family identified by match to protein family HMM PF00165%3B match to protein family HMM PF01229%3B match to protein family HMM PF02311%3B match to protein family HMM PF05899%3B match to protein family HMM PF07883 gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1328 TREPR_1329 TREPR_1329 TREPR_1329 2979773 2981995 - periplasmic beta-glucosidase/beta-xylosidase identified by match to protein family HMM PF00933%3B match to protein family HMM PF01915 gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1329 TREPR_1330 TREPR_1330 TREPR_1330 2978061 2979677 - alkaline phosphatase identified by match to protein family HMM PF00245 gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1330 TREPR_1331 TREPR_1331 TREPR_1331 2976873 2978054 - YibE/F family protein identified by match to protein family HMM PF07907 gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1331 TREPR_1332 TREPR_1332 TREPR_1332 2975192 2976712 - extracellular solute-binding protein family 5 identified by match to protein family HMM PF00496 gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1332 TREPR_1333 TREPR_1333 TREPR_1333 2974169 2975131 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1333 TREPR_1334 TREPR_1334 TREPR_1334 2973329 2974159 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1334 TREPR_1335 TREPR_1335 TREPR_1335 2972466 2973332 - ABC transporter%2C ATP-binding protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00005 pseudogene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1335 TREPR_1336 TREPR_1336 TREPR_1336 2971693 2972463 - OppF%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00005 pseudogene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1336 TREPR_1337 TREPR_1337 TREPR_1337 2970016 2971620 + para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) identified by match to protein family HMM PF00135 gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1337 TREPR_1338 TREPR_1338 TREPR_1338 2968291 2969916 + para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) identified by match to protein family HMM PF00135 gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1338 TREPR_1339 TREPR_1339 TREPR_1339 2966776 2968131 + hexokinase identified by match to protein family HMM PF00349%3B match to protein family HMM PF03727 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1339 TREPR_1340 TREPR_1340 lipB lipB 2965895 2966719 + lipoate-protein ligase B identified by match to protein family HMM PF00753 gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1340 TREPR_1342 TREPR_1342 TREPR_1342 2963577 2965778 + putative lipoprotein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1342 TREPR_1343 TREPR_1343 TREPR_1343 2961721 2963562 + putative lipoprotein identified by match to protein family HMM PF02368 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1343 TREPR_1345 TREPR_1345 TREPR_1345 2961047 2961274 + NAD+ synthetase gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1345 TREPR_1346 TREPR_1346 TREPR_1346 2957781 2960996 + probable extracellular nuclease gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1346 TREPR_1347 TREPR_1347 TREPR_1347 2956149 2957771 + putative pectate lyase 9A identified by match to protein family HMM PF07523 gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1347 TREPR_1348 TREPR_1348 TREPR_1348 2954958 2956145 + hypothetical protein identified by glimmer%3B putative gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1348 TREPR_1350 TREPR_1350 TREPR_1350 2952925 2954661 + NAD(+) synthase (glutamine-hydrolyzing) identified by match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552 gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1350 TREPR_1351 TREPR_1351 TREPR_1351 2951817 2952869 - transcriptional regulator identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1351 TREPR_1352 TREPR_1352 TREPR_1352 2950075 2951688 + hypothetical protein identified by glimmer%3B putative gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1352 TREPR_1353 TREPR_1353 TREPR_1353 2949259 2950029 + L-cystine import ATP-binding protein TcyN identified by match to protein family HMM PF00005 gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1353 TREPR_1354 TREPR_1354 TREPR_1354 2948546 2949262 + L-cystine transport system permease protein TcyB identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1354 TREPR_1355 TREPR_1355 TREPR_1355 2947694 2948527 + amino acid ABC-transporter%2C periplasmic amino acid-binding protein identified by match to protein family HMM PF00497 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1355 TREPR_1356 TREPR_1356 TREPR_1356 2946789 2947562 + HAD-superfamily hydrolase%2C subfamily IIB identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR01484 gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1356 TREPR_1357 TREPR_1357 TREPR_1357 2945208 2946779 + protein UshA identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1357 TREPR_1358 TREPR_1358 nhaC nhaC 2943591 2945042 + Na+/H+ antiporter NhaC identified by match to protein family HMM PF03553%3B match to protein family HMM TIGR00931 gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1358 TREPR_1359 TREPR_1359 TREPR_1359 2942015 2943409 + MutL protein identified by match to protein family HMM TIGR01319 gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1359 TREPR_1360 TREPR_1360 TREPR_1360 2939782 2942001 + D-ornithine aminomutase E component identified by match to protein family HMM PF02310%3B match to protein family HMM PF09043 gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1360 TREPR_1361 TREPR_1361 TREPR_1361 2939413 2939769 + D-ornithine aminomutase S component gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1361 TREPR_1362 TREPR_1362 TREPR_1362 2938048 2939403 + pyridoxal-5'-phosphate-dependent protein beta subunit identified by match to protein family HMM PF00291 gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1362 TREPR_1363 TREPR_1363 TREPR_1363 2937698 2937997 + conserved hypothetical protein gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1363 TREPR_1364 TREPR_1364 TREPR_1364 2936631 2937689 + dihydrodipicolinate reductase gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1364 TREPR_1365 TREPR_1365 TREPR_1365 2935246 2936379 - alanine racemase%2C N- domain protein identified by match to protein family HMM PF01168 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1365 TREPR_1366 TREPR_1366 argF argF 2934269 2935216 + ornithine carbamoyltransferase identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1366 TREPR_1367 TREPR_1367 TREPR_1367 2932876 2934120 - conserved hypothetical protein gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1367 TREPR_1368 TREPR_1368 rluD_2 rluD_2 2932156 2932869 - ribosomal large subunit pseudouridine synthase D identified by match to protein family HMM PF00849 gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1368 TREPR_1369 TREPR_1369 TREPR_1369 2930832 2932097 - threonyl/alanyl tRNA synthetase%2C SAD identified by match to protein family HMM PF02272%3B match to protein family HMM PF07973 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1369 TREPR_1370 TREPR_1370 TREPR_1370 2930287 2930823 - ATP:cob(I)alamin adenosyltransferase identified by match to protein family HMM PF01923%3B match to protein family HMM TIGR00636 gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1370 TREPR_1371 TREPR_1371 TREPR_1371 2928844 2930211 + transglutaminase domain protein identified by match to protein family HMM PF01841 gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1371 TREPR_1372 TREPR_1372 TREPR_1372 2927767 2928831 + mandelate racemase/muconate lactonizing enzyme family protein identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746 gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1372 TREPR_1373 TREPR_1373 TREPR_1373 2926710 2927717 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1373 TREPR_1374 TREPR_1374 TREPR_1374 2925718 2926713 + oligopeptide transport ATP-binding protein AppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1374 TREPR_1375 TREPR_1375 TREPR_1375 2924814 2925713 + dipeptide transport system permease protein DppC identified by match to protein family HMM PF00528 gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1375 TREPR_1376 TREPR_1376 TREPR_1376 2923880 2924812 + probable peptide ABC transporter permease protein y4tP identified by match to protein family HMM PF00528 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1376 TREPR_1377 TREPR_1377 TREPR_1377 2922163 2923764 + putative oligopeptide ABC transporter substrate-binding protein identified by match to protein family HMM PF00496 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1377 TREPR_1378 TREPR_1378 TREPR_1378 2920248 2921987 - ABC-type multidrug/protein/lipid transport system%2C ATPase component identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1378 TREPR_1379 TREPR_1379 TREPR_1379 2918380 2920212 - ABC-type multidrug/protein/lipid transport system%2C ATPase component identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1379 TREPR_1380 TREPR_1380 TREPR_1380 2916314 2917519 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1380 TREPR_1381 TREPR_1381 TREPR_1381 2916161 2916307 - hypothetical protein identified by glimmer%3B putative gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1381 TREPR_1382 TREPR_1382 TREPR_1382 2914699 2916159 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1382 TREPR_1383 TREPR_1383 TREPR_1383 2913743 2914702 - putative membrane fusion protein identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR01730 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1383 TREPR_1384 TREPR_1384 TREPR_1384 2910453 2913731 - acriflavine resistance protein identified by match to protein family HMM PF00873 gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1384 TREPR_1385 TREPR_1385 TREPR_1385 2910082 2910456 - conserved hypothetical protein gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1385 TREPR_1386 TREPR_1386 TREPR_1386 2909286 2909903 + hypothetical protein identified by glimmer%3B putative gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1386 TREPR_1387 TREPR_1387 TREPR_1387 2908225 2908890 + putative lipoprotein gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1387 TREPR_1388 TREPR_1388 TREPR_1388 2907650 2908222 + hypothetical protein identified by glimmer%3B putative gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1388 TREPR_1389 TREPR_1389 TREPR_1389 2907172 2907660 + hypothetical protein identified by glimmer%3B putative gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1389 TREPR_1390 TREPR_1390 TREPR_1390 2905998 2907152 + hypothetical protein identified by glimmer%3B putative gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1390 TREPR_1391 TREPR_1391 TREPR_1391 2905016 2906020 + hypothetical protein identified by glimmer%3B putative gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1391 TREPR_1392 TREPR_1392 TREPR_1392 2904495 2905004 + prepilin-type N- cleavage/methylation domain protein identified by match to protein family HMM TIGR02532 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1392 TREPR_1393 TREPR_1393 TREPR_1393 2904278 2904505 + hypothetical protein identified by glimmer%3B putative gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1393 TREPR_1394 TREPR_1394 gspG gspG 2903827 2904306 + general secretion pathway protein G identified by match to protein family HMM PF08334%3B match to protein family HMM TIGR01710%3B match to protein family HMM TIGR02532 gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1394 TREPR_1395 TREPR_1395 TREPR_1395 2902757 2903812 + bacterial type II secretion system protein F domain protein identified by match to protein family HMM PF00482 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1395 TREPR_1396 TREPR_1396 TREPR_1396 2901255 2902757 + general secretion pathway protein E (Type II traffic warden ATPase) identified by match to protein family HMM PF00437 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1396 TREPR_1397 TREPR_1397 TREPR_1397 2899201 2901258 + bacterial type II and III secretion system protein identified by match to protein family HMM PF00263%3B match to protein family HMM PF03958 gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1397 TREPR_1398 TREPR_1398 TREPR_1398 2898642 2899076 - peptidase%2C A24 (type IV prepilin peptidase) family identified by match to protein family HMM PF01478 gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1398 TREPR_1399 TREPR_1399 TREPR_1399 2896946 2898487 - hypothetical protein identified by glimmer%3B putative gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1399 TREPR_1400 TREPR_1400 TREPR_1400 2882009 2896942 - putative Ig domain family identified by match to protein family HMM PF00041%3B match to protein family HMM PF05345 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1400 TREPR_1401 TREPR_1401 TREPR_1401 2881173 2881952 + Cof family protein identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR01484 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1401 TREPR_1402 TREPR_1402 TREPR_1402 2880879 2881025 - hypothetical protein identified by glimmer%3B putative gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1402 TREPR_1403 TREPR_1403 TREPR_1403 2876811 2880701 - fibronectin type III domain protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00041 pseudogene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1403 TREPR_1404 TREPR_1404 TREPR_1404 2874261 2876795 - putative extracellular nuclease gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1404 TREPR_1405 TREPR_1405 TREPR_1405 2873920 2874096 - hypothetical protein identified by glimmer%3B putative gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1405 TREPR_1406 TREPR_1406 higA_2 higA_2 2873541 2873840 + addiction module antidote protein%2C HigA family identified by match to protein family HMM PF01381%3B match to protein family HMM TIGR02607 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1406 TREPR_1407 TREPR_1407 TREPR_1407 2872987 2873133 + hypothetical protein identified by glimmer%3B putative gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1407 TREPR_1408 TREPR_1408 TREPR_1408 2872672 2872947 - hypothetical protein identified by glimmer%3B putative gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1408 TREPR_1409 TREPR_1409 TREPR_1409 2872435 2872662 - hypothetical protein identified by glimmer%3B putative gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1409 TREPR_1410 TREPR_1410 TREPR_1410 2872249 2872416 - hypothetical protein identified by glimmer%3B putative gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1410 TREPR_1411 TREPR_1411 TREPR_1411 2871988 2872233 - conserved hypothetical protein gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1411 TREPR_1412 TREPR_1412 TREPR_1412 2871593 2871991 - putative PilT protein domain protein identified by match to protein family HMM PF01850 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1412 TREPR_1416 TREPR_1416 TREPR_1416 2868950 2870872 - tetratricopeptide repeat domain protein identified by match to protein family HMM PF07719 gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1416 TREPR_1417 TREPR_1417 TREPR_1417 2866507 2868945 - tetratricopeptide repeat domain protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 pseudogene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1417 TREPR_1418 TREPR_1418 TREPR_1418 2866071 2866415 + PemK family protein identified by match to protein family HMM PF02452 gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1418 TREPR_1419 TREPR_1419 TREPR_1419 2865796 2866065 + PemI family protein identified by match to protein family HMM PF04014 gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1419 TREPR_1420 TREPR_1420 TREPR_1420 2865028 2865732 + HAD-superfamily hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1420 TREPR_1421 TREPR_1421 pyrE pyrE 2864418 2865020 + orotate phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01367 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1421 TREPR_1422 TREPR_1422 TREPR_1422 2863129 2864361 - putative transporter gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1422 TREPR_1423 TREPR_1423 TREPR_1423 2861900 2863117 + macrolide export ATP-binding/permease protein MacB%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF02687 pseudogene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1423 TREPR_1424 TREPR_1424 TREPR_1424 2861251 2861931 + macrolide export ATP-binding/permease protein MacB%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00005 pseudogene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1424 TREPR_1425 TREPR_1425 TREPR_1425 2860241 2861251 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1425 TREPR_1426 TREPR_1426 TREPR_1426 2858818 2860254 + hypothetical protein identified by glimmer%3B putative gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1426 TREPR_1427 TREPR_1427 TREPR_1427 2858314 2858664 + conserved hypothetical protein gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1427 TREPR_1429 TREPR_1429 TREPR_1429 2857787 2858029 - hypothetical protein identified by glimmer%3B putative gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1429 TREPR_1430 TREPR_1430 TREPR_1430 2857398 2857748 + helix-turn-helix domain protein identified by match to protein family HMM PF01381 gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1430 TREPR_1432 TREPR_1432 TREPR_1432 2856966 2857139 - hypothetical protein identified by glimmer%3B putative gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1432 TREPR_1433 TREPR_1433 TREPR_1433 2856340 2856606 - hypothetical protein identified by glimmer%3B putative gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1433 TREPR_1434 TREPR_1434 TREPR_1434 2855368 2856048 - transposase%2C Mutator family%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00872 pseudogene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1434 TREPR_1435 TREPR_1435 TREPR_1435 2854958 2855353 - ISPsy18%2C transposase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1435 TREPR_1436 TREPR_1436 TREPR_1436 2854711 2854950 + hypothetical protein identified by glimmer%3B putative gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1436 TREPR_1437 TREPR_1437 TREPR_1437 2852832 2854058 + hypothetical protein identified by glimmer%3B putative gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1437 TREPR_1438 TREPR_1438 TREPR_1438 2846771 2852821 + putative lipoprotein gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1438 TREPR_1439 TREPR_1439 TREPR_1439 2846252 2846518 + addiction module toxin%2C Txe/YoeB family identified by match to protein family HMM PF06769%3B match to protein family HMM TIGR02116 gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1439 TREPR_1440 TREPR_1440 TREPR_1440 2845993 2846259 + addiction module antitoxin%2C RelB/DinJ family identified by match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1440 TREPR_1441 TREPR_1441 TREPR_1441 2844968 2845783 + conserved hypothetical protein gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1441 TREPR_1442 TREPR_1442 TREPR_1442 2843514 2844821 - putative bacterial extracellular solute-binding protein identified by match to protein family HMM PF01547 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1442 TREPR_1443 TREPR_1443 TREPR_1443 2842530 2843411 - sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1443 TREPR_1444 TREPR_1444 TREPR_1444 2841675 2842520 - sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1444 TREPR_1445 TREPR_1445 TREPR_1445 2840181 2841665 - MlrC domain protein identified by match to protein family HMM PF07364 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1445 TREPR_1446 TREPR_1446 TREPR_1446 2839778 2840146 + PIN domain protein identified by match to protein family HMM PF01850 gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1446 TREPR_1447 TREPR_1447 TREPR_1447 2839575 2839766 + conserved hypothetical protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1447 TREPR_1448 TREPR_1448 TREPR_1448 2839032 2839295 + hypothetical protein identified by glimmer%3B putative gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1448 TREPR_1449 TREPR_1449 TREPR_1449 2837879 2839033 - high-affinity iron permease identified by match to protein family HMM PF03239 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1449 TREPR_1450 TREPR_1450 TREPR_1450 2837228 2837809 - 34 kDa membrane antigen (Pathogen-specific membraneantigen) gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1450 TREPR_1451 TREPR_1451 TREPR_1451 2835860 2837110 - putative membrane protein gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1451 TREPR_1452 TREPR_1452 TREPR_1452 2834575 2835858 - ABC transporter permease protein identified by match to protein family HMM PF02687 gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1452 TREPR_1453 TREPR_1453 TREPR_1453 2833443 2834585 - permease domain protein identified by match to protein family HMM PF02687 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1453 TREPR_1454 TREPR_1454 TREPR_1454 2832708 2833403 - macrolide export ATP-binding/permease protein MacB 1/2 identified by match to protein family HMM PF00005 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1454 TREPR_1455 TREPR_1455 TREPR_1455 2832295 2832711 - 15 kDa lipoprotein gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1455 TREPR_1456 TREPR_1456 TREPR_1456 2830844 2832103 + conserved hypothetical protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1456 TREPR_1457 TREPR_1457 efp efp 2830138 2830701 + translation elongation factor P identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM PF09285%3B match to protein family HMM TIGR00038 gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1457 TREPR_1458 TREPR_1458 TREPR_1458 2828846 2829706 + hypothetical protein identified by glimmer%3B putative gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1458 TREPR_1459 TREPR_1459 pepF pepF 2826969 2828774 - oligoendopeptidase F identified by match to protein family HMM PF01432%3B match to protein family HMM PF08439%3B match to protein family HMM TIGR00181 gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1459 TREPR_1460 TREPR_1460 TREPR_1460 2826517 2826924 + hemerythrin identified by match to protein family HMM PF01814%3B match to protein family HMM TIGR02481 gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1460 TREPR_1462 TREPR_1462 TREPR_1462 2823743 2825947 - parallel beta-helix repeat protein gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1462 TREPR_1463 TREPR_1463 TREPR_1463 2822436 2823368 - outer membrane autotransporter barrel domain protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1463 TREPR_1464 TREPR_1464 TREPR_1464 2822036 2822179 - hypothetical protein identified by glimmer%3B putative gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1464 TREPR_1465 TREPR_1465 TREPR_1465 2820943 2822010 + spermidine/putrescine-binding periplasmic protein identified by match to protein family HMM PF01547 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1465 TREPR_1466 TREPR_1466 TREPR_1466 2820053 2820946 + ornithine carbamoyltransferase identified by match to protein family HMM PF00528 gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1466 TREPR_1467 TREPR_1467 TREPR_1467 2819151 2820056 + spermidine/putrescine transport system permease protein PotB identified by match to protein family HMM PF00528 gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1467 TREPR_1468 TREPR_1468 TREPR_1468 2817913 2819154 + spermidine/putrescine ABC transporter ATP-binding subunit identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187 gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1468 TREPR_1469 TREPR_1469 TREPR_1469 2817477 2817731 - prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1469 TREPR_1470 TREPR_1470 TREPR_1470 2817173 2817484 - putative addiction module toxin%2C RelE/StbE family identified by match to protein family HMM PF05016 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1470 TREPR_1471 TREPR_1471 rpsL rpsL 2816576 2816950 - ribosomal protein S12 identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1471 TREPR_1472 TREPR_1472 rpsG rpsG 2816095 2816565 - ribosomal protein S7 identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1472 TREPR_1475 TREPR_1475 tuf tuf 2814291 2815481 - translation elongation factor Tu identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1475 TREPR_1476 TREPR_1476 rpsJ rpsJ 2813910 2814218 - ribosomal protein S10 identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1476 TREPR_1477 TREPR_1477 rplC rplC 2813252 2813872 - ribosomal protein L3 identified by match to protein family HMM PF00297 gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1477 TREPR_1478 TREPR_1478 rplD rplD 2812570 2813241 - ribosomal protein%2C L4/L1 family identified by match to protein family HMM PF00573 gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1478 TREPR_1479 TREPR_1479 rplW rplW 2812286 2812573 - ribosomal protein L23 identified by match to protein family HMM PF00276 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1479 TREPR_1480 TREPR_1480 rplB rplB 2811432 2812262 - ribosomal protein L2 identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171 gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1480 TREPR_1481 TREPR_1481 rpsS rpsS 2811141 2811422 - ribosomal protein S19 identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1481 TREPR_1482 TREPR_1482 rplV rplV 2810761 2811132 - ribosomal protein L22 identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1482 TREPR_1483 TREPR_1483 rpsC rpsC 2810053 2810760 - ribosomal protein S3 identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1483 TREPR_1484 TREPR_1484 rplP rplP 2809560 2809985 - ribosomal protein L16 identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1484 TREPR_1485 TREPR_1485 rpmC rpmC 2809325 2809546 - ribosomal protein L29 identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1485 TREPR_1486 TREPR_1486 TREPR_1486 2809006 2809314 - 30S ribosomal protein S17 identified by match to protein family HMM PF00366 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1486 TREPR_1487 TREPR_1487 rplN rplN 2808623 2808991 - ribosomal protein L14 identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067 gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1487 TREPR_1488 TREPR_1488 rplX rplX 2808237 2808599 - ribosomal protein L24 identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1488 TREPR_1489 TREPR_1489 TREPR_1489 2807688 2808191 - 50S ribosomal protein L5 (BL6)%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673 pseudogene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1489 TREPR_1490 TREPR_1490 rpsN rpsN 2807495 2807680 - ribosomal protein S14p/S29e identified by match to protein family HMM PF00253 gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1490 TREPR_1491 TREPR_1491 rpsH rpsH 2807087 2807485 - ribosomal protein S8 identified by match to protein family HMM PF00410 gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1491 TREPR_1492 TREPR_1492 TREPR_1492 2806537 2807076 - 50S ribosomal protein L6 (BL10) identified by match to protein family HMM PF00347 gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1492 TREPR_1493 TREPR_1493 rplR rplR 2806118 2806480 - ribosomal protein L18 identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060 gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1493 TREPR_1494 TREPR_1494 rpsE rpsE 2805582 2806109 - ribosomal protein S5 identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021 gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1494 TREPR_1495 TREPR_1495 rpmD rpmD 2805394 2805579 - ribosomal protein L30 identified by match to protein family HMM PF00327%3B match to protein family HMM TIGR01308 gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1495 TREPR_1496 TREPR_1496 rplO rplO 2804942 2805394 - ribosomal protein L15 identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071 gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1496 TREPR_1497 TREPR_1497 secY secY 2803614 2804942 - preprotein translocase%2C SecY subunit identified by match to protein family HMM PF00344%3B match to protein family HMM TIGR00967 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1497 TREPR_1498 TREPR_1498 rpsM rpsM 2803024 2803389 - ribosomal protein S13p/S18e identified by match to protein family HMM PF00416 gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1498 TREPR_1499 TREPR_1499 rpsK rpsK 2802613 2802996 - ribosomal protein S11 identified by match to protein family HMM PF00411 gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1499 TREPR_1500 TREPR_1500 rpsD rpsD 2801918 2802553 - ribosomal protein S4 identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1500 TREPR_1501 TREPR_1501 rpoA rpoA 2800853 2801908 - DNA-directed RNA polymerase%2C alpha subunit identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027 gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1501 TREPR_1502 TREPR_1502 TREPR_1502 2800324 2800863 - 50S ribosomal protein L17 identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059 gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1502 TREPR_1503 TREPR_1503 TREPR_1503 2800111 2800311 - conserved hypothetical protein gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1503 TREPR_1504 TREPR_1504 TREPR_1504 2797760 2800027 + GTP diphosphokinase identified by match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1504 TREPR_1505 TREPR_1505 hemK hemK 2796775 2797755 + protein-(glutamine-N5) methyltransferase%2C release factor-specific identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03387%3B match to protein family HMM TIGR03534 gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1505 TREPR_1506 TREPR_1506 prfA prfA 2795678 2796763 + peptide chain release factor 1 identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019 gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1506 TREPR_1507 TREPR_1507 TREPR_1507 2795506 2795676 + hypothetical protein identified by glimmer%3B putative gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1507 TREPR_1508 TREPR_1508 TREPR_1508 2794550 2795443 + putative phosphoesterase PHP domain protein gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1508 TREPR_1509 TREPR_1509 TREPR_1509 2793498 2794553 + Fe(3+) ions import ATP-binding protein FbpC identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1509 TREPR_1510 TREPR_1510 TREPR_1510 2791806 2793485 + ABC transporter permease protein identified by match to protein family HMM PF00528 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1510 TREPR_1511 TREPR_1511 TREPR_1511 2790768 2791778 + putative ABC transporter%2C substrate binding protein identified by match to protein family HMM PF01547 gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1511 TREPR_1512 TREPR_1512 TREPR_1512 2789377 2790741 + glycoside hydrolase family 4 identified by match to protein family HMM PF02056 gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1512 TREPR_1513 TREPR_1513 TREPR_1513 2788356 2789339 + putative transcriptional regulator identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1513 TREPR_1514 TREPR_1514 TREPR_1514 2787445 2788359 + carbohydrate kinase%2C PfkB family identified by match to protein family HMM PF00294 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1514 TREPR_1516 TREPR_1516 TREPR_1516 2786862 2787296 - hypothetical protein identified by glimmer%3B putative gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1516 TREPR_1517 TREPR_1517 TREPR_1517 2785318 2786865 - putative lipoprotein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1517 TREPR_1518 TREPR_1518 TREPR_1518 2784355 2785272 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1518 TREPR_1519 TREPR_1519 TREPR_1519 2782709 2784217 - ribose import ATP-binding protein RbsA identified by match to protein family HMM PF00005 gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1519 TREPR_1520 TREPR_1520 TREPR_1520 2781769 2782731 - ribose transport system permease protein RbsC identified by match to protein family HMM PF02653 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1520 TREPR_1521 TREPR_1521 TREPR_1521 2780724 2781710 - putative sugar ABC-transporter%2C sugar-binding protein gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1521 TREPR_1522 TREPR_1522 TREPR_1522 2779451 2780704 - putative methyltransferase CmuC gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1522 TREPR_1523 TREPR_1523 TREPR_1523 2777740 2779437 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1523 TREPR_1524 TREPR_1524 TREPR_1524 2775799 2777685 + ATP-dependent RNA helicase DbpA%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 pseudogene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1524 TREPR_1525 TREPR_1525 TREPR_1525 2775712 2775825 - hypothetical protein identified by glimmer%3B putative gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1525 TREPR_1526 TREPR_1526 TREPR_1526 2774393 2775523 - conserved hypothetical ABC transporter periplasmic solute-binding protein identified by match to protein family HMM PF01547 gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1526 TREPR_1527 TREPR_1527 TREPR_1527 2772502 2774295 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1527 TREPR_1528 TREPR_1528 TREPR_1528 2771388 2772500 - tobe domain family identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1528 TREPR_1529 TREPR_1529 TREPR_1529 2770572 2771360 - conserved hypothetical protein identified by match to protein family HMM PF03668 gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1529 TREPR_1530 TREPR_1530 TREPR_1530 2769509 2770492 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1530 TREPR_1531 TREPR_1531 TREPR_1531 2767193 2769508 + peptide/opine/nickel uptake family ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00528%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1531 TREPR_1532 TREPR_1532 TREPR_1532 2766085 2767185 + oligopeptide transport system permease protein AppB identified by match to protein family HMM PF00528 gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1532 TREPR_1533 TREPR_1533 TREPR_1533 2764275 2766077 + putative transporter identified by match to protein family HMM PF00496 gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1533 TREPR_1534 TREPR_1534 TREPR_1534 2763324 2764211 + putative OmpA family protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1534 TREPR_1535 TREPR_1535 TREPR_1535 2761909 2763309 + transglycosylase%2C SLT family identified by match to protein family HMM PF01464%3B match to protein family HMM PF01476 gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1535 TREPR_1536 TREPR_1536 TREPR_1536 2761830 2761958 + hypothetical protein identified by glimmer%3B putative gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1536 TREPR_1537 TREPR_1537 TREPR_1537 2760746 2761846 + conserved hypothetical protein gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1537 TREPR_1538 TREPR_1538 TREPR_1538 2760043 2760681 - putative membrane protein gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1538 TREPR_1539 TREPR_1539 TREPR_1539 2758274 2760046 - tetratricopeptide repeat domain protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1539 TREPR_1540 TREPR_1540 TREPR_1540 2756085 2757875 - hypothetical protein identified by glimmer%3B putative gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1540 TREPR_1542 TREPR_1542 TREPR_1542 2754972 2755547 - rubrerythrin identified by match to protein family HMM PF00301%3B match to protein family HMM PF02915 gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1542 TREPR_1543 TREPR_1543 TREPR_1543 2754801 2754962 - rubredoxin identified by match to protein family HMM PF00301 gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1543 TREPR_1544 TREPR_1544 TREPR_1544 2754415 2754705 - conserved hypothetical protein gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1544 TREPR_1545 TREPR_1545 TREPR_1545 2753892 2754317 - preprotein translocase%2C YajC subunit identified by match to protein family HMM PF02699%3B match to protein family HMM TIGR00739 gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1545 TREPR_1546 TREPR_1546 secD secD 2752068 2753723 - protein-export membrane protein SecD identified by match to protein family HMM PF02355%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1546 TREPR_1547 TREPR_1547 secF secF 2750848 2752068 - protein-export membrane protein SecF identified by match to protein family HMM PF02355%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1547 TREPR_1548 TREPR_1548 ispH ispH 2749942 2750817 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1548 TREPR_1549 TREPR_1549 TREPR_1549 2748374 2749945 - hypothetical protein identified by glimmer%3B putative gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1549 TREPR_1550 TREPR_1550 TREPR_1550 2746835 2748352 + hypothetical protein identified by glimmer%3B putative gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1550 TREPR_1552 TREPR_1552 TREPR_1552 2745634 2746638 - vanillate:corrinoid protein methyltransferase gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1552 TREPR_1553 TREPR_1553 TREPR_1553 2743714 2745528 + ferredoxin identified by match to protein family HMM PF00111 gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1553 TREPR_1554 TREPR_1554 TREPR_1554 2743168 2743710 + conserved hypothetical protein gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1554 TREPR_1555 TREPR_1555 TREPR_1555 2742463 2743092 + dimethylamine corrinoid protein identified by match to protein family HMM PF02310%3B match to protein family HMM PF02607 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1555 TREPR_1556 TREPR_1556 TREPR_1556 2741601 2742401 + methyl corrinoid protein identified by match to protein family HMM PF00809 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1556 TREPR_1558 TREPR_1558 TREPR_1558 2740341 2741351 + putative veratrol:corrinoid protein metyltransferase gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1558 TREPR_1559 TREPR_1559 TREPR_1559 2739043 2740224 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1559 TREPR_1560 TREPR_1560 TREPR_1560 2737930 2738973 + putative veratrol:corrinoid protein metyltransferase gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1560 TREPR_1561 TREPR_1561 TREPR_1561 2736893 2737801 + putative transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1561 TREPR_1562 TREPR_1562 TREPR_1562 2736463 2736750 + hypothetical protein identified by glimmer%3B putative gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1562 TREPR_1563 TREPR_1563 TREPR_1563 2735711 2736307 + cobalamin synthesis protein%2C P47K%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF02492 pseudogene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1563 TREPR_1564 TREPR_1564 TREPR_1564 2734319 2735692 + putative amino acid transporter identified by match to protein family HMM PF00324 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1564 TREPR_1567 TREPR_1567 TREPR_1567 2733502 2733618 + hypothetical protein identified by glimmer%3B putative gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1567 TREPR_1568 TREPR_1568 TREPR_1568 2733303 2733530 - putative ferredoxin%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1568 TREPR_1569 TREPR_1569 TREPR_1569 2731914 2733287 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1569 TREPR_1570 TREPR_1570 valS valS 2729135 2731825 - valine--tRNA ligase identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00422 gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1570 TREPR_1571 TREPR_1571 TREPR_1571 2728556 2729125 - conserved hypothetical protein gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1571 TREPR_1572 TREPR_1572 TREPR_1572 2727684 2728529 - carboxypeptidase identified by match to protein family HMM PF02557 gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1572 TREPR_1573 TREPR_1573 TREPR_1573 2726477 2727634 + transporter%2C major facilitator family identified by match to protein family HMM PF03825%3B match to protein family HMM PF07690 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1573 TREPR_1574 TREPR_1574 TREPR_1574 2723824 2726391 + hamp domain protein identified by match to protein family HMM PF00672%3B match to protein family HMM PF07228 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1574 TREPR_1575 TREPR_1575 TREPR_1575 2723073 2723690 - flavin reductase identified by match to protein family HMM PF03358 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1575 TREPR_1576 TREPR_1576 TREPR_1576 2722282 2722974 - conserved hypothetical protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1576 TREPR_1577 TREPR_1577 TREPR_1577 2720701 2722281 - glycoside hydrolase%2C family 57 identified by match to protein family HMM PF03065%3B match to protein family HMM PF09210 gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1577 TREPR_1578 TREPR_1578 TREPR_1578 2720418 2720588 - conserved domain protein identified by match to protein family HMM PF00037 gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1578 TREPR_1579 TREPR_1579 TREPR_1579 2719401 2720381 - M23/M37 peptidase domain protein identified by match to protein family HMM PF01551 gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1579 TREPR_1580 TREPR_1580 TREPR_1580 2718403 2719404 - hypothetical protein identified by glimmer%3B putative gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1580 TREPR_1582 TREPR_1582 TREPR_1582 2716925 2717548 - putative NADPH-dependent fmn reductase identified by match to protein family HMM PF03358 gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1582 TREPR_1583 TREPR_1583 TREPR_1583 2714193 2716913 - penicillin-binding protein 1A identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074 gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1583 TREPR_1584 TREPR_1584 TREPR_1584 2713706 2714098 - transcriptional repressor protein KorB identified by match to protein family HMM PF02195 gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1584 TREPR_1585 TREPR_1585 TREPR_1585 2709765 2709944 + hypothetical protein identified by glimmer%3B putative gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1585 TREPR_1586 TREPR_1586 TREPR_1586 2709934 2713692 - signal transduction histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1586 TREPR_1587 TREPR_1587 TREPR_1587 2705005 2709777 - carboxylesterase family identified by match to protein family HMM PF00135%3B match to protein family HMM PF00753 gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1587 TREPR_1588 TREPR_1588 fusA_2 fusA_2 2702896 2704938 + translation elongation factor G identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1588 TREPR_1589 TREPR_1589 TREPR_1589 2700764 2702755 + iron-sulfur cluster-binding family protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00037%3B match to protein family HMM PF04060 gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1589 TREPR_1590 TREPR_1590 TREPR_1590 2700641 2700802 - hypothetical protein identified by glimmer%3B putative gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1590 TREPR_1591 TREPR_1591 TREPR_1591 2700154 2700537 - hypothetical protein identified by glimmer%3B putative gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1591 TREPR_1592 TREPR_1592 TREPR_1592 2700048 2700179 - hypothetical protein identified by glimmer%3B putative gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1592 TREPR_1598 TREPR_1598 TREPR_1598 2693907 2694065 + hypothetical protein identified by glimmer%3B putative gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1598 TREPR_1599 TREPR_1599 TREPR_1599 2692216 2693931 - para-nitroBenzyl esterase (pnb carboxy-esterase)(intracellular esterase b) (pnbce) identified by match to protein family HMM PF00135 gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1599 TREPR_1600 TREPR_1600 TREPR_1600 2689480 2692044 + cellobiose phosphorylase identified by match to protein family HMM PF06165%3B match to protein family HMM PF06205 gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1600 TREPR_1601 TREPR_1601 TREPR_1601 2687996 2689345 - putative bacterial extracellular solute-binding protein identified by match to protein family HMM PF01547 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1601 TREPR_1602 TREPR_1602 TREPR_1602 2687000 2687899 - sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1602 TREPR_1603 TREPR_1603 TREPR_1603 2686157 2686996 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1603 TREPR_1604 TREPR_1604 TREPR_1604 2683649 2686153 - beta-mannosidase identified by match to protein family HMM PF02837 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1604 TREPR_1605 TREPR_1605 TREPR_1605 2682282 2683631 - beta-galactosidase identified by match to protein family HMM PF00232%3B match to protein family HMM TIGR03356 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1605 TREPR_1606 TREPR_1606 TREPR_1606 2680491 2682209 + dihydroxy-acid dehydratase (DAD) identified by match to protein family HMM PF00920 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1606 TREPR_1607 TREPR_1607 TREPR_1607 2679554 2680471 + oxidoreductase YdhF identified by match to protein family HMM PF00248 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1607 TREPR_1608 TREPR_1608 TREPR_1608 2678702 2679550 + sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1608 TREPR_1609 TREPR_1609 TREPR_1609 2677815 2678699 + sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1609 TREPR_1610 TREPR_1610 TREPR_1610 2676443 2677741 + putative extracellular solute-binding protein%2C family 1 identified by match to protein family HMM PF01547 gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1610 TREPR_1611 TREPR_1611 TREPR_1611 2675038 2676420 + beta-galactosidase identified by match to protein family HMM PF00232%3B match to protein family HMM TIGR03356 gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1611 TREPR_1612 TREPR_1612 TREPR_1612 2674000 2675001 + glycosylase identified by match to protein family HMM PF04041 gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1612 TREPR_1614 TREPR_1614 TREPR_1614 2673100 2673795 + GntR domain protein identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1614 TREPR_1615 TREPR_1615 TREPR_1615 2671607 2672923 - DHH family protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01368%3B match to protein family HMM PF02272 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1615 TREPR_1616 TREPR_1616 TREPR_1616 2670489 2671607 - Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1616 TREPR_1617 TREPR_1617 TREPR_1617 2668334 2670382 + helicase%2C UvrD/Rep family identified by match to protein family HMM PF00580 gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1617 TREPR_1618 TREPR_1618 TREPR_1618 2667846 2668328 + small multidrug export protein identified by match to protein family HMM PF06695 gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1618 TREPR_1619 TREPR_1619 rdgB rdgB 2667182 2667775 + non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042 gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1619 TREPR_1620 TREPR_1620 recQ recQ 2665215 2667167 - ATP-dependent DNA helicase RecQ identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM PF09382%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389 gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1620 TREPR_1621 TREPR_1621 TREPR_1621 2663475 2665130 + diphosphate--fructose-6-phosphate 1-phosphotransferase identified by match to protein family HMM PF00365%3B match to protein family HMM TIGR02477 gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1621 TREPR_1622 TREPR_1622 TREPR_1622 2662714 2663397 + putative uridylate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02076 gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1622 TREPR_1623 TREPR_1623 TREPR_1623 2661062 2662690 + putative lipoprotein identified by match to protein family HMM PF01833%3B match to protein family HMM PF01841 gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1623 TREPR_1624 TREPR_1624 TREPR_1624 2660511 2661059 + hypothetical protein identified by glimmer%3B putative gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1624 TREPR_1625 TREPR_1625 TREPR_1625 2659936 2660514 + conserved hypothetical protein gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1625 TREPR_1626 TREPR_1626 TREPR_1626 2659392 2659946 + RNA polymerase sigma-24 factor identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1626 TREPR_1627 TREPR_1627 cysS cysS 2657921 2659354 + cysteine--tRNA ligase identified by match to protein family HMM PF01406%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00435 gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1627 TREPR_1628 TREPR_1628 TREPR_1628 2656883 2657866 + glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1628 TREPR_1629 TREPR_1629 TREPR_1629 2655556 2656890 + hypothetical protein identified by glimmer%3B putative gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1629 TREPR_1630 TREPR_1630 TREPR_1630 2654359 2655531 - Stage II sporulation protein E identified by match to protein family HMM PF07228 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1630 TREPR_1631 TREPR_1631 TREPR_1631 2652768 2653199 + thioesterase superfamily protein identified by match to protein family HMM PF03061 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1631 TREPR_1632 TREPR_1632 TREPR_1632 2653171 2654346 - Stage II sporulation protein E identified by match to protein family HMM PF07228 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1632 TREPR_1633 TREPR_1633 TREPR_1633 2650725 2652728 - signal transduction histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1633 TREPR_1634 TREPR_1634 TREPR_1634 2650036 2650668 - conserved hypothetical protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1634 TREPR_1635 TREPR_1635 TREPR_1635 2648610 2649134 + 3-isopropylmalate dehydratase small subunit 2 (isopropylmalate isomerase 2) (alpha-ipm isomerase 2) (ipmi 2) identified by match to protein family HMM PF00694 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1635 TREPR_1636 TREPR_1636 TREPR_1636 2649131 2650039 - conserved hypothetical protein identified by match to protein family HMM PF08843 gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1636 TREPR_1637 TREPR_1637 TREPR_1637 2647275 2648567 + 3-isopropylmalate dehydratase large subunit 1 (isopropylmalate isomerase 1) (alpha-ipm isomerase 1) (ipmi 1) identified by match to protein family HMM PF00330%3B match to protein family HMM TIGR01343%3B match to protein family HMM TIGR02086 gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1637 TREPR_1638 TREPR_1638 TREPR_1638 2629908 2647037 - putative lipoprotein gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1638 TREPR_1639 TREPR_1639 TREPR_1639 2628860 2629717 - conserved hypothetical protein gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1639 TREPR_1640 TREPR_1640 TREPR_1640 2628012 2628833 + fnip gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1640 TREPR_1641 TREPR_1641 TREPR_1641 2627837 2628055 - hypothetical protein identified by glimmer%3B putative gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1641 TREPR_1642 TREPR_1642 TREPR_1642 2623730 2627794 + OmpA family protein identified by match to protein family HMM PF00691 gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1642 TREPR_1643 TREPR_1643 TREPR_1643 2623029 2623661 + putative membrane protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1643 TREPR_1645 TREPR_1645 infC infC 2622269 2622784 - translation initiation factor IF-3 identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1645 TREPR_1646 TREPR_1646 rpmI rpmI 2622051 2622251 - ribosomal protein L35 identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1646 TREPR_1647 TREPR_1647 rplT rplT 2621598 2621966 - ribosomal protein L20 identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032 gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1647 TREPR_1648 TREPR_1648 TREPR_1648 2621086 2621586 - conserved hypothetical protein gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1648 TREPR_1649 TREPR_1649 TREPR_1649 2620776 2621075 - conserved hypothetical protein gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1649 TREPR_1650 TREPR_1650 manA manA 2619511 2620758 - mannose-6-phosphate isomerase%2C class I identified by match to protein family HMM PF01238%3B match to protein family HMM TIGR00218 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1650 TREPR_1651 TREPR_1651 TREPR_1651 2619044 2619514 - conserved hypothetical protein identified by match to protein family HMM PF02639 gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1651 TREPR_1652 TREPR_1652 TREPR_1652 2617784 2619037 + GAF domain/HD domain protein identified by match to protein family HMM PF01590%3B match to protein family HMM PF01966 gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1652 TREPR_1653 TREPR_1653 TREPR_1653 2617483 2617761 + foldase protein PrsA identified by match to protein family HMM PF00639 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1653 TREPR_1654 TREPR_1654 TREPR_1654 2615524 2617413 + putative adenylate cyclase 2 (ATP pyrophosphate-lyase 2) (Adenylylcyclase 2) (AC2) identified by match to protein family HMM PF00072%3B match to protein family HMM PF00211 gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1654 TREPR_1655 TREPR_1655 TREPR_1655 2613183 2615531 + response regulator receiver domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1655 TREPR_1656 TREPR_1656 TREPR_1656 2611609 2613174 + methyl-accepting chemotaxis sensory transducer identified by match to protein family HMM PF00015 gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1656 TREPR_1657 TREPR_1657 TREPR_1657 2609534 2611612 + putative methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1657 TREPR_1658 TREPR_1658 TREPR_1658 2607881 2609521 + putative MCP methyltransferase%2C CheR-type identified by match to protein family HMM PF01739 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1658 TREPR_1659 TREPR_1659 TREPR_1659 2606874 2607884 + chemotaxis response regulator protein-glutamate methylesterase identified by match to protein family HMM PF00072%3B match to protein family HMM PF01339 gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1659 TREPR_1660 TREPR_1660 TREPR_1660 2606321 2606881 + hypothetical protein identified by glimmer%3B putative gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1660 TREPR_1661 TREPR_1661 TREPR_1661 2605839 2606306 + conserved hypothetical protein identified by match to protein family HMM PF01584 gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1661 TREPR_1662 TREPR_1662 TREPR_1662 2604739 2605119 + hypothetical protein identified by glimmer%3B putative gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1662 TREPR_1663 TREPR_1663 TREPR_1663 2603502 2604737 + hypothetical protein identified by glimmer%3B putative gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1663 TREPR_1664 TREPR_1664 TREPR_1664 2601244 2603319 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1664 TREPR_1665 TREPR_1665 TREPR_1665 2599867 2601156 + conserved hypothetical protein gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1665 TREPR_1666 TREPR_1666 TREPR_1666 2599031 2599732 - macrolide export ATP-binding/permease protein MacB identified by match to protein family HMM PF00005 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1666 TREPR_1667 TREPR_1667 TREPR_1667 2595789 2599031 - ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1667 TREPR_1668 TREPR_1668 TREPR_1668 2594482 2595693 - molybdenum cofactor synthesis domain protein identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM TIGR00177 gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1668 TREPR_1669 TREPR_1669 TREPR_1669 2593392 2594465 + iron(III) dicitrate transport ATP-binding protein FecE identified by match to protein family HMM PF01497 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1669 TREPR_1670 TREPR_1670 TREPR_1670 2592555 2593370 + hemin import ATP-binding protein HmuV identified by match to protein family HMM PF00005 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1670 TREPR_1671 TREPR_1671 TREPR_1671 2591554 2592558 + HmuU protein identified by match to protein family HMM PF01032 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1671 TREPR_1672 TREPR_1672 TREPR_1672 2590408 2591502 + iron(III) dicitrate transport ATP-binding protein FecE identified by match to protein family HMM PF01497 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1672 TREPR_1673 TREPR_1673 TREPR_1673 2591487 2591603 - hypothetical protein identified by glimmer%3B putative gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1673 TREPR_1674 TREPR_1674 TREPR_1674 2590171 2590293 - hypothetical protein identified by glimmer%3B putative gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1674 TREPR_1675 TREPR_1675 TREPR_1675 2588508 2589911 + oxaloacetate decarboxylase%2C subunit beta identified by match to protein family HMM PF03977%3B match to protein family HMM TIGR01109 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1675 TREPR_1676 TREPR_1676 oadA oadA 2586380 2588437 + oxaloacetate decarboxylase alpha subunit identified by match to protein family HMM PF00364%3B match to protein family HMM PF00682%3B match to protein family HMM PF02436%3B match to protein family HMM TIGR01108 gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1676 TREPR_1677 TREPR_1677 TREPR_1677 2586103 2586363 + sodium pump decarboxylase%2C gamma subunit identified by match to protein family HMM PF04277%3B match to protein family HMM TIGR01195 gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1677 TREPR_1679 TREPR_1679 TREPR_1679 2585645 2585812 - hypothetical protein identified by glimmer%3B putative gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1679 TREPR_1680 TREPR_1680 TREPR_1680 2584932 2585348 - conserved hypothetical protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1680 TREPR_1681 TREPR_1681 TREPR_1681 2583058 2584836 - putative phosphomannomutase identified by match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1681 TREPR_1682 TREPR_1682 TREPR_1682 2582117 2583049 - putative lipoprotein gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1682 TREPR_1683 TREPR_1683 TREPR_1683 2580991 2581974 - putative trap dicarboxylate transporter- dctp subunit identified by match to protein family HMM PF03480 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1683 TREPR_1684 TREPR_1684 TREPR_1684 2579075 2580985 - trap dicarboxylate transporter- dctm subunit identified by match to protein family HMM PF04290%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00786 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1684 TREPR_1685 TREPR_1685 alr alr 2577954 2579075 - alanine racemase identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1685 TREPR_1686 TREPR_1686 TREPR_1686 2576367 2577425 - PhoH family protein identified by match to protein family HMM PF02562 gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1686 TREPR_1687 TREPR_1687 TREPR_1687 2573978 2576392 - HD domain protein identified by match to protein family HMM PF01966%3B match to protein family HMM PF07698%3B match to protein family HMM TIGR00277 gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1687 TREPR_1688 TREPR_1688 TREPR_1688 2573507 2573977 - conserved hypothetical protein identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1688 TREPR_1689 TREPR_1689 TREPR_1689 2572706 2573506 - hemolysin C identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1689 TREPR_1690 TREPR_1690 TREPR_1690 2570627 2572654 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1690 TREPR_1691 TREPR_1691 TREPR_1691 2570224 2570529 - plasmid stabilization system antitoxin protein identified by match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1691 TREPR_1692 TREPR_1692 TREPR_1692 2569923 2570234 - conserved plasmid protein identified by match to protein family HMM PF05016%3B match to protein family HMM TIGR02385 gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1692 TREPR_1693 TREPR_1693 TREPR_1693 2569738 2569902 - hypothetical protein identified by glimmer%3B putative gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1693 TREPR_1694 TREPR_1694 TREPR_1694 2568717 2569712 - ABC transporter%2C substrate-binding protein identified by match to protein family HMM PF04392 gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1694 TREPR_1695 TREPR_1695 TREPR_1695 2567772 2568704 - ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1695 TREPR_1696 TREPR_1696 TREPR_1696 2566966 2567775 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1696 TREPR_1697 TREPR_1697 TREPR_1697 2566847 2566966 - hypothetical protein identified by glimmer%3B putative gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1697 TREPR_1698 TREPR_1698 TREPR_1698 2566720 2566863 - conserved hypothetical protein gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1698 TREPR_1699 TREPR_1699 TREPR_1699 2566494 2566727 - hypothetical protein identified by glimmer%3B putative gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1699 TREPR_1700 TREPR_1700 TREPR_1700 2565628 2566314 - transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027 gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1700 TREPR_1701 TREPR_1701 asrA asrA 2564543 2565571 - sulfite reductase%2C subunit A identified by match to protein family HMM TIGR02910 gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1701 TREPR_1702 TREPR_1702 asrB asrB 2563762 2564556 - sulfite reductase%2C subunit B identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM TIGR02911 gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1702 TREPR_1703 TREPR_1703 asrC asrC 2562789 2563751 - sulfite reductase%2C subunit C identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02912 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1703 TREPR_1704 TREPR_1704 TREPR_1704 2561634 2562731 + response regulator receiver modulated metal dependent phosphohydrolase identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1704 TREPR_1705 TREPR_1705 TREPR_1705 2559411 2561594 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1705 TREPR_1706 TREPR_1706 TREPR_1706 2559235 2559414 + hypothetical protein identified by glimmer%3B putative gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1706 TREPR_1708 TREPR_1708 TREPR_1708 2557522 2558832 - putative bacterial extracellular solute-binding protein identified by match to protein family HMM PF01547 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1708 TREPR_1709 TREPR_1709 TREPR_1709 2556079 2557518 - transcriptional regulator%2C LuxR family protein identified by match to protein family HMM PF00196 gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1709 TREPR_1710 TREPR_1710 TREPR_1710 2552970 2556059 - hybrid sensory kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02743 gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1710 TREPR_1711 TREPR_1711 TREPR_1711 2551986 2552780 + hypothetical protein identified by glimmer%3B putative gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1711 TREPR_1712 TREPR_1712 TREPR_1712 2550246 2551961 + protein tyrosine/serine phosphatase gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1712 TREPR_1713 TREPR_1713 TREPR_1713 2549953 2550090 + hypothetical protein identified by glimmer%3B putative gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1713 TREPR_1714 TREPR_1714 TREPR_1714 2549303 2549923 + putative transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1714 TREPR_1715 TREPR_1715 tgt tgt 2547936 2549078 - tRNA-guanine transglycosylase identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449 gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1715 TREPR_1716 TREPR_1716 TREPR_1716 2546302 2547939 - conserved hypothetical protein identified by match to protein family HMM PF03130 gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1716 TREPR_1717 TREPR_1717 TREPR_1717 2543578 2546271 + transcription elongation factor identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1717 TREPR_1718 TREPR_1718 TREPR_1718 2542558 2543544 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1718 TREPR_1719 TREPR_1719 rpe rpe 2541826 2542575 - ribulose-phosphate 3-epimerase identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1719 TREPR_1720 TREPR_1720 TREPR_1720 2540718 2541740 - tetratricopeptide repeat domain protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1720 TREPR_1721 TREPR_1721 TREPR_1721 2539582 2540712 - tetratricopeptide repeat domain protein identified by match to protein family HMM PF07719 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1721 TREPR_1722 TREPR_1722 TREPR_1722 2538471 2539571 + putative ribose-Phosphate pyrophosphokinase (rppk) (phosphoribosylpyrophosphate synthetase) (p-rib-pp synthetase) (prpp synthetase) identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1722 TREPR_1723 TREPR_1723 TREPR_1723 2537254 2538339 + radical SAM enzyme%2C Cfr family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048 gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1723 TREPR_1724 TREPR_1724 TREPR_1724 2538305 2538421 - hypothetical protein identified by glimmer%3B putative gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1724 TREPR_1725 TREPR_1725 TREPR_1725 2536097 2537254 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1725 TREPR_1726 TREPR_1726 TREPR_1726 2535757 2536104 + conserved hypothetical protein gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1726 TREPR_1727 TREPR_1727 TREPR_1727 2535163 2535693 + methyltransferase small identified by match to protein family HMM PF03602 gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1727 TREPR_1729 TREPR_1729 TREPR_1729 2534192 2534563 - hypothetical protein identified by glimmer%3B putative gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1729 TREPR_1730 TREPR_1730 miaB miaB 2532827 2534170 - tRNA-I(6)A37 thiotransferase enzyme MiaB identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574 gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1730 TREPR_1731 TREPR_1731 TREPR_1731 2532485 2532817 - conserved hypothetical protein gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1731 TREPR_1732 TREPR_1732 TREPR_1732 2531422 2532510 - tetratricopeptide repeat domain protein identified by match to protein family HMM PF05036%3B match to protein family HMM PF07719 gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1732 TREPR_1733 TREPR_1733 TREPR_1733 2530887 2531399 + DinB family identified by match to protein family HMM PF05163 gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1733 TREPR_1734 TREPR_1734 TREPR_1734 2529443 2530813 + putative lipoprotein gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1734 TREPR_1735 TREPR_1735 TREPR_1735 2528199 2529446 + 23S rRNA (uracil-5-)-methyltransferase RumA identified by match to protein family HMM PF05958 gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1735 TREPR_1736 TREPR_1736 TREPR_1736 2527169 2528134 - alpha/beta hydrolase family protein identified by match to protein family HMM PF00561 gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1736 TREPR_1737 TREPR_1737 TREPR_1737 2525932 2527155 - polyA polymerase family protein identified by match to protein family HMM PF01743%3B match to protein family HMM TIGR01942 gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1737 TREPR_1738 TREPR_1738 TREPR_1738 2525717 2525851 + hypothetical protein identified by glimmer%3B putative gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1738 TREPR_1739 TREPR_1739 TREPR_1739 2523842 2525602 + tetratricopeptide repeat domain protein gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1739 TREPR_1740 TREPR_1740 TREPR_1740 2522962 2523825 + conserved hypothetical protein gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1740 TREPR_1741 TREPR_1741 TREPR_1741 2521774 2522874 + Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321 gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1741 TREPR_1742 TREPR_1742 TREPR_1742 2519682 2521652 + 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1742 TREPR_1743 TREPR_1743 TREPR_1743 2518499 2519656 + ribosomal large subunit pseudouridine synthase C identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479 gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1743 TREPR_1744 TREPR_1744 TREPR_1744 2517777 2518265 - integral membrane protein identified by match to protein family HMM PF02681 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1744 TREPR_1745 TREPR_1745 TREPR_1745 2516175 2517644 - putative membrane protein gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1745 TREPR_1746 TREPR_1746 TREPR_1746 2514682 2516178 - putative 4Fe-4S ferredoxin%2C RnfC identified by match to protein family HMM PF00037 gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1746 TREPR_1747 TREPR_1747 TREPR_1747 2513531 2514682 - putative membrane protein gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1747 TREPR_1748 TREPR_1748 TREPR_1748 2513034 2513534 - hypothetical protein identified by glimmer%3B putative gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1748 TREPR_1749 TREPR_1749 TREPR_1749 2512418 2513044 - putative membrane protein gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1749 TREPR_1750 TREPR_1750 TREPR_1750 2511792 2512421 - hypothetical protein identified by glimmer%3B putative gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1750 TREPR_1751 TREPR_1751 TREPR_1751 2509785 2511677 - alpha-amylase identified by match to protein family HMM PF03065 gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1751 TREPR_1752 TREPR_1752 TREPR_1752 2509091 2509591 - hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1752 TREPR_1753 TREPR_1753 TREPR_1753 2508615 2509103 - hypothetical protein identified by glimmer%3B putative gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1753 TREPR_1754 TREPR_1754 TREPR_1754 2507875 2508384 - conserved hypothetical protein identified by match to protein family HMM PF02576 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1754 TREPR_1755 TREPR_1755 TREPR_1755 2506323 2507870 - transcription termination factor NusA identified by match to protein family HMM PF00575%3B match to protein family HMM PF08529%3B match to protein family HMM TIGR01953 gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1755 TREPR_1756 TREPR_1756 infB infB 2503442 2506342 - translation initiation factor IF-2 identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1756 TREPR_1757 TREPR_1757 rbfA rbfA 2503062 2503436 - ribosome-binding factor A identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082 gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1757 TREPR_1758 TREPR_1758 TREPR_1758 2502116 2503087 - tRNA pseudouridine synthase B identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1758 TREPR_1759 TREPR_1759 TREPR_1759 2501341 2502129 - putative riboflavin biosynthesis protein RibF identified by match to protein family HMM PF01467%3B match to protein family HMM PF06574 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1759 TREPR_1760 TREPR_1760 rpsO rpsO 2501047 2501316 - ribosomal protein S15 identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952 gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1760 TREPR_1761 TREPR_1761 pnp pnp 2498709 2500898 - polyribonucleotide nucleotidyltransferase identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726%3B match to protein family HMM TIGR03591 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1761 TREPR_1762 TREPR_1762 TREPR_1762 2498238 2498687 - dUTP diphosphatase identified by match to protein family HMM PF00692%3B match to protein family HMM TIGR00576 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1762 TREPR_1763 TREPR_1763 TREPR_1763 2496953 2498236 - putative permease%2C YjgP/YjgQ family identified by match to protein family HMM PF03739%3B overlaps another CDS with the same product name gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1763 TREPR_1764 TREPR_1764 TREPR_1764 2495892 2496956 - putative permease%2C YjgP/YjgQ family identified by match to protein family HMM PF03739%3B overlaps another CDS with the same product name gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1764 TREPR_1765 TREPR_1765 TREPR_1765 2494985 2495857 - conserved hypothetical protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1765 TREPR_1766 TREPR_1766 prfB prfB 2493781 2494725 - peptide chain release factor 2 identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020 gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1766 TREPR_1767 TREPR_1767 TREPR_1767 2492286 2493794 - hypothetical protein identified by glimmer%3B putative gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1767 TREPR_1768 TREPR_1768 ftsY ftsY 2491393 2492274 - signal recognition particle-docking protein FtsY identified by match to protein family HMM PF00448%3B match to protein family HMM TIGR00064 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1768 TREPR_1769 TREPR_1769 TREPR_1769 2489934 2491400 - hypothetical protein identified by glimmer%3B putative gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1769 TREPR_1770 TREPR_1770 TREPR_1770 2488585 2489934 - putative lipoprotein releasing system%2C permease protein identified by match to protein family HMM PF02687 gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1770 TREPR_1771 TREPR_1771 TREPR_1771 2487849 2488592 - lipoprotein-releasing system ATP-binding protein LolD identified by match to protein family HMM PF00005 gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1771 TREPR_1772 TREPR_1772 TREPR_1772 2486593 2487852 - putative lipoprotein releasing system%2C permease protein identified by match to protein family HMM PF02687 gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1772 TREPR_1773 TREPR_1773 TREPR_1773 2484189 2486504 - aconitase family protein identified by match to protein family HMM PF00330 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1773 TREPR_1775 TREPR_1775 carB carB 2480005 2483274 + carbamoyl-phosphate synthase%2C large subunit identified by match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02222%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369 gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1775 TREPR_1776 TREPR_1776 carA carA 2478890 2480008 + carbamoyl-phosphate synthase%2C small subunit%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 pseudogene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1776 TREPR_1778 TREPR_1778 TREPR_1778 2478206 2478655 - hemerythrin family protein identified by match to protein family HMM PF01814%3B match to protein family HMM TIGR02481 gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1778 TREPR_1779 TREPR_1779 TREPR_1779 2476988 2477641 - DNA-binding protein/PTS system%2C IIA component identified by match to protein family HMM PF00359%3B match to protein family HMM PF00376%3B match to protein family HMM PF05930%3B match to protein family HMM TIGR01764 gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1779 TREPR_1780 TREPR_1780 TREPR_1780 2475192 2476832 + bacterial extracellular solute-binding protein%2C family 5 identified by match to protein family HMM PF00496 gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1780 TREPR_1781 TREPR_1781 TREPR_1781 2473924 2475138 + putative dipeptidase identified by match to protein family HMM PF01244 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1781 TREPR_1782 TREPR_1782 TREPR_1782 2472280 2473893 + putative D-aminoacylase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1782 TREPR_1783 TREPR_1783 TREPR_1783 2471108 2472241 + Xaa-Pro dipeptidase identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321 gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1783 TREPR_1784 TREPR_1784 TREPR_1784 2470145 2471083 + oligopeptide transport system permease protein AppC identified by match to protein family HMM PF00528 gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1784 TREPR_1785 TREPR_1785 TREPR_1785 2469177 2470133 + oligopeptide transport system permease protein AppB identified by match to protein family HMM PF00528 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1785 TREPR_1786 TREPR_1786 TREPR_1786 2468192 2469154 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1786 TREPR_1787 TREPR_1787 TREPR_1787 2467215 2468195 + oligopeptide transport ATP-binding protein AppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1787 TREPR_1788 TREPR_1788 TREPR_1788 2465968 2467137 + conserved hypothetical protein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1788 TREPR_1789 TREPR_1789 TREPR_1789 2465206 2465916 - ribosomal large subunit pseudouridine synthase C identified by match to protein family HMM PF00849 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1789 TREPR_1790 TREPR_1790 TREPR_1790 2464869 2465198 + DNA-binding protein identified by match to protein family HMM PF01381 gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1790 TREPR_1793 TREPR_1793 TREPR_1793 2463247 2464617 - putative alpha-fucosidase gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1793 TREPR_1794 TREPR_1794 TREPR_1794 2461769 2463067 + ATPase gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1794 TREPR_1795 TREPR_1795 TREPR_1795 2459168 2461651 - methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) identified by match to protein family HMM PF01588%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00398 gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1795 TREPR_1796 TREPR_1796 TREPR_1796 2458050 2459168 - pentaglycine interpeptide bridge formation protein identified by match to protein family HMM PF02388 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1796 TREPR_1797 TREPR_1797 TREPR_1797 2457538 2458053 - hypothetical protein identified by glimmer%3B putative gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1797 TREPR_1798 TREPR_1798 TREPR_1798 2455981 2457501 - putative 3-dehydroquinate dehydratase%2C type 1/shikimate 5-dehydrogenase identified by match to protein family HMM PF01487%3B match to protein family HMM PF01488%3B match to protein family HMM PF08501 gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1798 TREPR_1799 TREPR_1799 TREPR_1799 2455415 2455969 - transcriptional regulator%2C XRE family with cupin sensor identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1799 TREPR_1800 TREPR_1800 TREPR_1800 2453645 2455387 - acyl-coenzyme A synthetase ACSM3 identified by match to protein family HMM PF00501 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1800 TREPR_1801 TREPR_1801 TREPR_1801 2451403 2453517 + conserved hypothetical protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1801 TREPR_1802 TREPR_1802 cdd cdd 2450915 2451313 - cytidine deaminase identified by match to protein family HMM PF00383%3B match to protein family HMM TIGR01354 gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1802 TREPR_1803 TREPR_1803 TREPR_1803 2449080 2450915 - putative sucrose phosphorylase (Sucroseglucosyltransferase) identified by match to protein family HMM PF00128 gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1803 TREPR_1805 TREPR_1805 TREPR_1805 2447403 2448650 + putative hydroxypyruvate reductase identified by match to protein family HMM PF05161 gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1805 TREPR_1806 TREPR_1806 TREPR_1806 2445551 2447377 + neopullulanase%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00128%3B match to protein family HMM PF02903 pseudogene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1806 TREPR_1807 TREPR_1807 TREPR_1807 2445343 2445558 + conserved hypothetical protein gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1807 TREPR_1808 TREPR_1808 queA queA 2444260 2445282 + S-adenosylmethionine:tRNA ribosyltransferase-isomerase identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1808 TREPR_1809 TREPR_1809 ruvB ruvB 2443206 2444285 + holliday junction DNA helicase RuvB identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1809 TREPR_1810 TREPR_1810 TREPR_1810 2442772 2443077 - addiction module antitoxin%2C RelB/DinJ family identified by match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1810 TREPR_1811 TREPR_1811 TREPR_1811 2442437 2442772 - conserved hypothetical protein gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1811 TREPR_1812 TREPR_1812 TREPR_1812 2441761 2442384 + hypothetical protein identified by glimmer%3B putative gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1812 TREPR_1813 TREPR_1813 TREPR_1813 2440214 2441764 + conserved hypothetical protein identified by match to protein family HMM PF03781 gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1813 TREPR_1814 TREPR_1814 TREPR_1814 2438038 2440005 + conserved hypothetical protein identified by match to protein family HMM PF03235 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1814 TREPR_1815 TREPR_1815 TREPR_1815 2436716 2438041 + conserved hypothetical protein identified by match to protein family HMM PF03235 gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1815 TREPR_1816 TREPR_1816 TREPR_1816 2436052 2436645 + hypothetical protein identified by glimmer%3B putative gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1816 TREPR_1818 TREPR_1818 TREPR_1818 2432809 2435967 + putative UvrD/REP helicase identified by match to protein family HMM PF00580 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1818 TREPR_1819 TREPR_1819 TREPR_1819 2430176 2432812 + hypothetical protein identified by glimmer%3B putative gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1819 TREPR_1820 TREPR_1820 TREPR_1820 2429364 2430167 + ADP-ribosylglycohydrolase family protein identified by match to protein family HMM PF03747 gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1820 TREPR_1821 TREPR_1821 TREPR_1821 2428904 2429317 + hypothetical protein identified by glimmer%3B putative gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1821 TREPR_1822 TREPR_1822 TREPR_1822 2428503 2428907 + hypothetical protein identified by glimmer%3B putative gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1822 TREPR_1823 TREPR_1823 TREPR_1823 2427678 2428442 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1823 TREPR_1824 TREPR_1824 TREPR_1824 2427236 2427619 + conserved hypothetical protein gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1824 TREPR_1825 TREPR_1825 TREPR_1825 2426925 2427068 + hypothetical protein identified by glimmer%3B putative gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1825 TREPR_1826 TREPR_1826 TREPR_1826 2424698 2426923 + putative AAA ATPase identified by match to protein family HMM PF00004 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1826 TREPR_1827 TREPR_1827 TREPR_1827 2423727 2424614 + RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1827 TREPR_1828 TREPR_1828 TREPR_1828 2422354 2423382 + conserved hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1828 TREPR_1829 TREPR_1829 ruvA ruvA 2421697 2422290 + holliday junction DNA helicase RuvA identified by match to protein family HMM PF01330%3B match to protein family HMM TIGR00084 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1829 TREPR_1830 TREPR_1830 TREPR_1830 2421231 2421662 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1830 TREPR_1831 TREPR_1831 TREPR_1831 2419943 2421256 + YprB gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1831 TREPR_1832 TREPR_1832 TREPR_1832 2417500 2419953 + dead/deah box helicase domain protein identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF09369 gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1832 TREPR_1833 TREPR_1833 glgC glgC 2416114 2417388 - glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1833 TREPR_1834 TREPR_1834 TREPR_1834 2413474 2416089 + negative regulator of genetic competence ClpC/MecB identified by match to protein family HMM PF00004%3B match to protein family HMM PF02151%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728 gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1834 TREPR_1835 TREPR_1835 TREPR_1835 2411514 2413019 + hypothetical protein identified by glimmer%3B putative gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1835 TREPR_1836 TREPR_1836 TREPR_1836 2410519 2411517 + DHH family protein identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272 gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1836 TREPR_1838 TREPR_1838 TREPR_1838 2409350 2410426 - conserved hypothetical protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1838 TREPR_1839 TREPR_1839 TREPR_1839 2407593 2409350 - pyruvate%2C phosphate dikinase (Pyruvate%2C orthophosphatedikinase) identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1839 TREPR_1840 TREPR_1840 TREPR_1840 2407225 2407581 - FMN-binding domain protein identified by match to protein family HMM PF04205 gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1840 TREPR_1841 TREPR_1841 pta pta 2406113 2407111 + phosphate acetyltransferase identified by match to protein family HMM PF01515%3B match to protein family HMM TIGR00651 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1841 TREPR_1842 TREPR_1842 TREPR_1842 2405550 2405924 - conserved hypothetical protein identified by match to protein family HMM PF04519 gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1842 TREPR_1843 TREPR_1843 TREPR_1843 2404911 2405543 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1843 TREPR_1844 TREPR_1844 TREPR_1844 2403296 2404906 - 2-methylthioadenine synthetase identified by match to protein family HMM PF00919%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089 gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1844 TREPR_1846 TREPR_1846 TREPR_1846 2401560 2402393 - FdhC protein identified by match to protein family HMM PF01226 gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1846 TREPR_1847 TREPR_1847 TREPR_1847 2399456 2401438 + ATP dependent DNA ligase C region family identified by match to protein family HMM PF04679 gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1847 TREPR_1848 TREPR_1848 TREPR_1848 2398751 2399452 + hypothetical protein identified by glimmer%3B putative gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1848 TREPR_1849 TREPR_1849 TREPR_1849 2398134 2398739 + hypothetical protein identified by glimmer%3B putative gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1849 TREPR_1850 TREPR_1850 TREPR_1850 2397257 2398123 + conserved hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1850 TREPR_1851 TREPR_1851 TREPR_1851 2396380 2397186 + von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1851 TREPR_1852 TREPR_1852 TREPR_1852 2395047 2396366 + conserved hypothetical protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1852 TREPR_1853 TREPR_1853 TREPR_1853 2394374 2395033 + sigma-70%2C region 4 family identified by match to protein family HMM PF00196%3B match to protein family HMM PF08281 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1853 TREPR_1854 TREPR_1854 TREPR_1854 2393167 2394330 + XylR identified by match to protein family HMM PF03781 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1854 TREPR_1855 TREPR_1855 TREPR_1855 2392044 2393177 + conserved hypothetical protein identified by match to protein family HMM PF03781 gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1855 TREPR_1856 TREPR_1856 TREPR_1856 2390554 2391981 + tetratricopeptide repeat domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1856 TREPR_1858 TREPR_1858 TREPR_1858 2389210 2390109 + hypothetical protein identified by glimmer%3B putative gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1858 TREPR_1859 TREPR_1859 TREPR_1859 2388501 2389160 + putative lipoprotein gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1859 TREPR_1860 TREPR_1860 TREPR_1860 2387864 2388469 + two component transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1860 TREPR_1861 TREPR_1861 TREPR_1861 2386659 2387867 + putative signal transduction histidine kinase identified by match to protein family HMM PF02518 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1861 TREPR_1862 TREPR_1862 TREPR_1862 2385884 2386585 - hypothetical protein identified by glimmer%3B putative gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1862 TREPR_1863 TREPR_1863 TREPR_1863 2385490 2385831 + transcriptional modulator of MazE/toxin%2C MazF identified by match to protein family HMM PF02452 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1863 TREPR_1865 TREPR_1865 TREPR_1865 2384012 2384203 + conserved hypothetical protein gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1865 TREPR_1866 TREPR_1866 TREPR_1866 2382596 2383660 + hypothetical protein identified by glimmer%3B putative gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1866 TREPR_1867 TREPR_1867 TREPR_1867 2380970 2382556 + surface antigen BspA gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1867 TREPR_1869 TREPR_1869 TREPR_1869 2380202 2380645 + hypothetical protein identified by glimmer%3B putative gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1869 TREPR_1870 TREPR_1870 TREPR_1870 2379788 2379907 + hypothetical protein identified by glimmer%3B putative gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1870 TREPR_1871 TREPR_1871 TREPR_1871 2379201 2379716 + hypothetical protein identified by glimmer%3B putative gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1871 TREPR_1873 TREPR_1873 TREPR_1873 2377935 2378966 + putative helix-turn-helix%2C type 11 domain protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1873 TREPR_1874 TREPR_1874 TREPR_1874 2377801 2377938 + hypothetical protein identified by glimmer%3B putative gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1874 TREPR_1875 TREPR_1875 TREPR_1875 2377522 2377722 - hypothetical protein identified by glimmer%3B putative gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1875 TREPR_1876 TREPR_1876 TREPR_1876 2377170 2377439 + hypothetical protein identified by glimmer%3B putative gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1876 TREPR_1877 TREPR_1877 TREPR_1877 2376614 2377168 + hypothetical protein identified by glimmer%3B putative gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1877 TREPR_1878 TREPR_1878 TREPR_1878 2374859 2376535 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1878 TREPR_1879 TREPR_1879 TREPR_1879 2372140 2374617 - PAS domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1879 TREPR_1881 TREPR_1881 TREPR_1881 2371044 2371898 - hypothetical protein identified by glimmer%3B putative gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1881 TREPR_1882 TREPR_1882 TREPR_1882 2370460 2371053 - hypothetical protein identified by glimmer%3B putative gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1882 TREPR_1883 TREPR_1883 TREPR_1883 2369624 2370436 - hypothetical protein identified by glimmer%3B putative gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1883 TREPR_1884 TREPR_1884 TREPR_1884 2366628 2369609 - conserved hypothetical protein gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1884 TREPR_1885 TREPR_1885 TREPR_1885 2366044 2366628 - hypothetical protein identified by glimmer%3B putative gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1885 TREPR_1886 TREPR_1886 TREPR_1886 2365803 2366042 - hypothetical protein identified by glimmer%3B putative gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1886 TREPR_1887 TREPR_1887 TREPR_1887 2365565 2365750 - hypothetical protein identified by glimmer%3B putative gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1887 TREPR_1888 TREPR_1888 TREPR_1888 2365308 2365517 + hypothetical protein identified by glimmer%3B putative gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1888 TREPR_1890 TREPR_1890 TREPR_1890 2364199 2365062 - hypothetical protein identified by glimmer%3B putative gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1890 TREPR_1891 TREPR_1891 TREPR_1891 2362687 2364162 - phosphomethylpyrimidine kinase gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1891 TREPR_1892 TREPR_1892 TREPR_1892 2361669 2362583 + hypothetical protein identified by glimmer%3B putative gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1892 TREPR_1894 TREPR_1894 TREPR_1894 2361429 2361629 + hypothetical protein identified by glimmer%3B putative gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1894 TREPR_1895 TREPR_1895 TREPR_1895 2358771 2361188 - leucine Rich Repeat domain protein identified by match to protein family HMM PF00560 gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1895 TREPR_1896 TREPR_1896 TREPR_1896 2358212 2358688 - hypothetical protein identified by glimmer%3B putative gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1896 TREPR_1897 TREPR_1897 TREPR_1897 2355045 2358128 - conserved hypothetical protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1897 TREPR_1898 TREPR_1898 TREPR_1898 2354582 2355064 - hypothetical protein identified by glimmer%3B putative gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1898 TREPR_1899 TREPR_1899 TREPR_1899 2353882 2354517 + hypothetical protein identified by glimmer%3B putative gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1899 TREPR_1901 TREPR_1901 TREPR_1901 2350601 2353684 - conserved hypothetical protein gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1901 TREPR_1903 TREPR_1903 TREPR_1903 2349263 2350318 + putative transposase identified by match to protein family HMM PF00665 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1903 TREPR_1904 TREPR_1904 TREPR_1904 2348598 2349218 + hypothetical protein identified by glimmer%3B putative gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1904 TREPR_1905 TREPR_1905 TREPR_1905 2348217 2348582 + hypothetical protein identified by glimmer%3B putative gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1905 TREPR_1906 TREPR_1906 TREPR_1906 2347818 2348216 + hypothetical protein identified by glimmer%3B putative gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1906 TREPR_1907 TREPR_1907 TREPR_1907 2346499 2347791 + hypothetical protein identified by glimmer%3B putative gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1907 TREPR_1908 TREPR_1908 TREPR_1908 2346228 2346422 + hypothetical protein identified by glimmer%3B putative gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1908 TREPR_1909 TREPR_1909 TREPR_1909 2345269 2346066 + hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1909 TREPR_1911 TREPR_1911 mfd mfd 2341678 2345115 - transcription-repair coupling factor identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM TIGR00580 gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1911 TREPR_1912 TREPR_1912 TREPR_1912 2341026 2341655 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1912 TREPR_1913 TREPR_1913 TREPR_1913 2340265 2340993 - probable 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530%3B 1-agp acyltransferase%3B 1-agpat%3B lysophosphatidic acidacyltransferase%3B lpaat gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1913 TREPR_1916 TREPR_1916 TREPR_1916 2339271 2339921 - multimeric flavodoxin identified by match to protein family HMM PF03358 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1916 TREPR_1918 TREPR_1918 TREPR_1918 2338447 2338938 - hypothetical protein identified by glimmer%3B putative gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1918 TREPR_1919 TREPR_1919 flgK flgK 2336555 2338435 - flagellar hook-associated protein FlgK identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492 gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1919 TREPR_1920 TREPR_1920 flgL flgL 2335249 2336496 - flagellar hook-associated protein 3 identified by match to protein family HMM PF00669%3B match to protein family HMM PF07196%3B match to protein family HMM TIGR02550 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1920 TREPR_1921 TREPR_1921 TREPR_1921 2334771 2335220 - flagellar assembly factor FliW identified by match to protein family HMM PF02623 gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1921 TREPR_1922 TREPR_1922 csrA csrA 2334544 2334777 - carbon storage regulator identified by match to protein family HMM PF02599%3B match to protein family HMM TIGR00202 gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1922 TREPR_1923 TREPR_1923 TREPR_1923 2333381 2334538 + HD domain protein identified by match to protein family HMM PF01966 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1923 TREPR_1924 TREPR_1924 TREPR_1924 2332649 2333344 + peptidase%2C M22 family identified by match to protein family HMM PF00814 gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1924 TREPR_1925 TREPR_1925 TREPR_1925 2332248 2332652 + conserved hypothetical protein identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1925 TREPR_1926 TREPR_1926 TREPR_1926 2331956 2332219 + conserved hypothetical protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1926 TREPR_1927 TREPR_1927 TREPR_1927 2330805 2331899 + type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1927 TREPR_1928 TREPR_1928 TREPR_1928 2329829 2330788 + conserved hypothetical protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1928 TREPR_1929 TREPR_1929 TREPR_1929 2327787 2329817 + flagellar hook-associated protein 2 (HAP2) (Filament cap protein)(Flagellar cap protein) identified by match to protein family HMM PF02465%3B match to protein family HMM PF07195 gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1929 TREPR_1930 TREPR_1930 TREPR_1930 2327342 2327725 + putative flagellin FlaG identified by match to protein family HMM PF03646 gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1930 TREPR_1931 TREPR_1931 TREPR_1931 2326331 2327185 + flagellar filament 34.5 kDa core protein (Class B) identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1931 TREPR_1932 TREPR_1932 TREPR_1932 2325141 2326001 + flagellar filament 34.5 kDa core protein (Class B) identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1932 TREPR_1933 TREPR_1933 TREPR_1933 2324934 2325068 - hypothetical protein identified by glimmer%3B putative gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1933 TREPR_1934 TREPR_1934 TREPR_1934 2324428 2324568 + hypothetical protein identified by glimmer%3B putative gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1934 TREPR_1935 TREPR_1935 dxs dxs 2322314 2324239 - 1-deoxy-D-xylulose-5-phosphate synthase identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204 gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1935 TREPR_1936 TREPR_1936 TREPR_1936 2321382 2322239 - conserved hypothetical protein identified by match to protein family HMM PF02457%3B match to protein family HMM TIGR00159 gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1936 TREPR_1937 TREPR_1937 TREPR_1937 2320424 2321392 - conserved hypothetical protein identified by match to protein family HMM PF07949 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1937 TREPR_1938 TREPR_1938 acpS acpS 2319988 2320362 - holo-[acyl-carrier-protein] synthase identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556 gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1938 TREPR_1939 TREPR_1939 TREPR_1939 2319114 2319980 - conserved hypothetical protein gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1939 TREPR_1940 TREPR_1940 TREPR_1940 2318279 2319121 - tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) (PSU-I) identified by match to protein family HMM PF01416 gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1940 TREPR_1941 TREPR_1941 TREPR_1941 2317452 2318273 + putative methyltransferase nsun4 (Nol1/nop2/sun domainfamily member 4) identified by match to protein family HMM PF01189 gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1941 TREPR_1942 TREPR_1942 TREPR_1942 2317109 2317489 + manganese-dependent transcription regulator identified by match to protein family HMM PF01022%3B match to protein family HMM PF01325%3B match to protein family HMM PF02742 gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1942 TREPR_1943 TREPR_1943 rpiB rpiB 2316584 2317039 - ribose-5-phosphate isomerase B identified by match to protein family HMM PF02502%3B match to protein family HMM TIGR00689%3B match to protein family HMM TIGR01120 gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1943 TREPR_1944 TREPR_1944 TREPR_1944 2316384 2316521 + hypothetical protein identified by glimmer%3B putative gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1944 TREPR_1945 TREPR_1945 rpsT rpsT 2315944 2316219 - ribosomal protein S20 identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029 gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1945 TREPR_1946 TREPR_1946 TREPR_1946 2315473 2315883 - DNA-binding protein HBbu identified by match to protein family HMM PF00216 gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1946 TREPR_1947 TREPR_1947 lnt lnt 2313848 2315476 - apolipoprotein N-acyltransferase identified by match to protein family HMM PF00795%3B match to protein family HMM TIGR00546 gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1947 TREPR_1948 TREPR_1948 TREPR_1948 2313111 2313848 - two-component hybrid sensor and regulator identified by match to protein family HMM PF00072 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1948 TREPR_1949 TREPR_1949 TREPR_1949 2312711 2313127 - conserved hypothetical protein identified by match to protein family HMM PF04519 gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1949 TREPR_1950 TREPR_1950 TREPR_1950 2312188 2312718 - CinA domain protein identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199 gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1950 TREPR_1951 TREPR_1951 clpP_2 clpP_2 2311517 2312152 - Clp protease identified by match to protein family HMM PF00574 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1951 TREPR_1952 TREPR_1952 TREPR_1952 2309998 2310390 + NimC/NimA family protein identified by match to protein family HMM PF01243 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1952 TREPR_1953 TREPR_1953 TREPR_1953 2310380 2311498 - hypothetical protein identified by glimmer%3B putative gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1953 TREPR_1954 TREPR_1954 TREPR_1954 2309297 2309866 + putative NADPH-dependent fmn reductase identified by match to protein family HMM PF03358 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1954 TREPR_1955 TREPR_1955 TREPR_1955 2307511 2309124 - ABC transporter peptide-binding protein identified by match to protein family HMM PF00496 gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1955 TREPR_1956 TREPR_1956 gsiC gsiC 2306506 2307453 - glutathione ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1956 TREPR_1957 TREPR_1957 TREPR_1957 2305612 2306499 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1957 TREPR_1958 TREPR_1958 TREPR_1958 2304599 2305600 - oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1958 TREPR_1959 TREPR_1959 TREPR_1959 2303531 2304589 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1959 TREPR_1960 TREPR_1960 TREPR_1960 2303022 2303438 + hypothetical protein identified by glimmer%3B putative gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1960 TREPR_1961 TREPR_1961 TREPR_1961 2302410 2303021 + cobalamin synthesis protein/P47K family protein identified by match to protein family HMM PF02492 gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1961 TREPR_1962 TREPR_1962 TREPR_1962 2301377 2302345 + veratrol:corrinoid protein metyltransferase gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1962 TREPR_1963 TREPR_1963 TREPR_1963 2300239 2301294 + putative transposase identified by match to protein family HMM PF00665 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1963 TREPR_1964 TREPR_1964 TREPR_1964 2299264 2300076 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1964 TREPR_1965 TREPR_1965 TREPR_1965 2297353 2299005 + manganese-dependent inorganic pyrophosphatase identified by match to protein family HMM PF00571%3B match to protein family HMM PF02833%3B match to protein family HMM PF07085 gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1965 TREPR_1966 TREPR_1966 TREPR_1966 2295496 2297352 + alpha galactosidase identified by match to protein family HMM PF02065 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1966 TREPR_1967 TREPR_1967 pth pth 2294801 2295424 - aminoacyl-tRNA hydrolase identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447 gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1967 TREPR_1968 TREPR_1968 TREPR_1968 2293811 2294785 - phosphoglycerate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1968 TREPR_1969 TREPR_1969 TREPR_1969 2292907 2293788 + MazG family protein identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444 gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1969 TREPR_1970 TREPR_1970 TREPR_1970 2292180 2292881 + MgtC/SapB transporter identified by match to protein family HMM PF02308 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1970 TREPR_1971 TREPR_1971 TREPR_1971 2291259 2292152 + putative ribokinase identified by match to protein family HMM PF00294 gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1971 TREPR_1972 TREPR_1972 TREPR_1972 2290211 2291275 + LacI family transcriptional repressor identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1972 TREPR_1973 TREPR_1973 TREPR_1973 2289688 2290116 + hypothetical protein identified by glimmer%3B putative gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1973 TREPR_1974 TREPR_1974 TREPR_1974 2288382 2289578 + conserved hypothetical ABC transporter periplasmic solute-binding protein identified by match to protein family HMM PF01547 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1974 TREPR_1975 TREPR_1975 TREPR_1975 2287239 2288360 + tobe domain family identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1975 TREPR_1976 TREPR_1976 TREPR_1976 2285309 2287174 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1976 TREPR_1977 TREPR_1977 TREPR_1977 2284492 2285262 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549 gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1977 TREPR_1978 TREPR_1978 TREPR_1978 2283732 2284499 + hydrolase identified by match to protein family HMM PF00702 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1978 TREPR_1979 TREPR_1979 TREPR_1979 2282653 2283735 + hypothetical protein identified by glimmer%3B putative gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1979 TREPR_1980 TREPR_1980 TREPR_1980 2281227 2282366 + Fe(3+) ions import ATP-binding protein FbpC identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1980 TREPR_1981 TREPR_1981 TREPR_1981 2279453 2281234 + ABC transporter permease protein identified by match to protein family HMM PF00528 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1981 TREPR_1982 TREPR_1982 TREPR_1982 2278310 2279359 + iron ABC transporter substrate-binding protein identified by match to protein family HMM PF01547 gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1982 TREPR_1983 TREPR_1983 TREPR_1983 2277254 2277958 + putative PHP domain protein identified by match to protein family HMM PF02811 gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1983 TREPR_1985 TREPR_1985 TREPR_1985 2273636 2277232 + sensory box sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1985 TREPR_1986 TREPR_1986 TREPR_1986 2271058 2273616 + sensor protein GacS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1986 TREPR_1987 TREPR_1987 TREPR_1987 2270389 2271033 + HAD superfamily hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1987 TREPR_1988 TREPR_1988 TREPR_1988 2269057 2270355 + glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1988 TREPR_1989 TREPR_1989 TREPR_1989 2267515 2269047 + hypothetical protein identified by glimmer%3B putative gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1989 TREPR_1990 TREPR_1990 nifJ nifJ 2263640 2267203 + pyruvate:ferredoxin (flavodoxin) oxidoreductase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176 gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1990 TREPR_1991 TREPR_1991 TREPR_1991 2263161 2263310 - hypothetical protein identified by glimmer%3B putative gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1991 TREPR_1992 TREPR_1992 TREPR_1992 2262385 2262966 + putative lipoprotein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1992 TREPR_1993 TREPR_1993 TREPR_1993 2262155 2262367 + hypothetical protein identified by glimmer%3B putative gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1993 TREPR_1994 TREPR_1994 TREPR_1994 2260025 2262103 - hypothetical protein identified by glimmer%3B putative gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1994 TREPR_1995 TREPR_1995 murB murB 2259058 2260038 - UDP-N-acetylmuramate dehydrogenase identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1995 TREPR_1997 TREPR_1997 TREPR_1997 2257730 2258905 - cyclic nucleotide-binding protein identified by match to protein family HMM PF00027 gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1997 TREPR_1998 TREPR_1998 TREPR_1998 2256888 2257595 - conserved hypothetical protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1998 TREPR_1999 TREPR_1999 TREPR_1999 2256410 2256886 - conserved hypothetical protein identified by match to protein family HMM PF02643 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_1999 TREPR_2000 TREPR_2000 TREPR_2000 2255152 2256057 - arylacetamide deacetylase (aadac) identified by match to protein family HMM PF07859 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2000 TREPR_2001 TREPR_2001 TREPR_2001 2253877 2255142 - conserved hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2001 TREPR_2002 TREPR_2002 TREPR_2002 2253207 2253875 - putative membrane protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2002 TREPR_2003 TREPR_2003 TREPR_2003 2251876 2253201 + putative sugar ABC transporter identified by match to protein family HMM PF01547 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2003 TREPR_2004 TREPR_2004 TREPR_2004 2249918 2251879 + cytoplasmic filament protein A gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2004 TREPR_2005 TREPR_2005 TREPR_2005 2245502 2249899 + putative BNR domain protein gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2005 TREPR_2006 TREPR_2006 TREPR_2006 2244493 2245524 + hypothetical protein identified by glimmer%3B putative gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2006 TREPR_2007 TREPR_2007 TREPR_2007 2225887 2244411 + putative lipoprotein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2007 TREPR_2010 TREPR_2010 TREPR_2010 2223709 2225178 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2010 TREPR_2011 TREPR_2011 TREPR_2011 2223253 2223579 - hypothetical protein identified by glimmer%3B putative gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2011 TREPR_2012 TREPR_2012 TREPR_2012 2222733 2223269 - hypothetical protein identified by glimmer%3B putative gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2012 TREPR_2013 TREPR_2013 TREPR_2013 2221495 2222730 - phage terminase%2C large subunit%2C PBSX family identified by match to protein family HMM TIGR01547 gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2013 TREPR_2014 TREPR_2014 TREPR_2014 2220248 2221438 - phage portal protein%2C HK97 family identified by match to protein family HMM PF04860%3B match to protein family HMM TIGR01537 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2014 TREPR_2015 TREPR_2015 TREPR_2015 2219536 2220258 - transcriptional regulator%2C LuxR family protein identified by match to protein family HMM PF00196 gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2015 TREPR_2016 TREPR_2016 TREPR_2016 2218860 2219555 - putative caudovirus prohead protease identified by match to protein family HMM PF04586 gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2016 TREPR_2017 TREPR_2017 TREPR_2017 2217487 2218791 - putative phage capsid family identified by match to protein family HMM PF05065 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2017 TREPR_2018 TREPR_2018 TREPR_2018 2217029 2217448 + conserved hypothetical protein gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2018 TREPR_2019 TREPR_2019 TREPR_2019 2216641 2216970 + hypothetical protein identified by glimmer%3B putative gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2019 TREPR_2021 TREPR_2021 TREPR_2021 2215828 2215953 - hypothetical protein identified by glimmer%3B putative gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2021 TREPR_2022 TREPR_2022 TREPR_2022 2215253 2215789 - thyroid hormone receptor interactor 4 gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2022 TREPR_2023 TREPR_2023 TREPR_2023 2213635 2214786 + hypothetical protein identified by glimmer%3B putative gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2023 TREPR_2024 TREPR_2024 TREPR_2024 2208590 2213590 + endonuclease and methylase LlaGI identified by match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2024 TREPR_2025 TREPR_2025 TREPR_2025 2208226 2208588 + hypothetical protein identified by glimmer%3B putative gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2025 TREPR_2026 TREPR_2026 TREPR_2026 2207575 2208198 + peptidase%2C S24 identified by match to protein family HMM PF00717 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2026 TREPR_2027 TREPR_2027 TREPR_2027 2206659 2207462 - conserved hypothetical protein identified by match to protein family HMM PF01904 gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2027 TREPR_2028 TREPR_2028 TREPR_2028 2205439 2206656 - DNA-directed DNA polymerase identified by match to protein family HMM PF00817 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2028 TREPR_2029 TREPR_2029 TREPR_2029 2202498 2205446 - error-prone DNA polymerase identified by match to protein family HMM PF01336%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2029 TREPR_2032 TREPR_2032 TREPR_2032 2201133 2201549 - putative weak: protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2032 TREPR_2034 TREPR_2034 TREPR_2034 2199809 2200576 + conserved hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2034 TREPR_2035 TREPR_2035 TREPR_2035 2199304 2199582 + hypothetical protein identified by glimmer%3B putative gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2035 TREPR_2036 TREPR_2036 TREPR_2036 2198728 2199282 + conserved hypothetical protein gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2036 TREPR_2037 TREPR_2037 TREPR_2037 2197910 2198575 + hypothetical protein identified by glimmer%3B putative gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2037 TREPR_2038 TREPR_2038 TREPR_2038 2197009 2197848 + putative UvrD/REP helicase gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2038 TREPR_2040 TREPR_2040 TREPR_2040 2195992 2196588 - hypothetical protein identified by glimmer%3B putative gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2040 TREPR_2041 TREPR_2041 TREPR_2041 2195534 2195968 - hypothetical protein identified by glimmer%3B putative gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2041 TREPR_2042 TREPR_2042 TREPR_2042 2194659 2195537 - hypothetical protein identified by glimmer%3B putative gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2042 TREPR_2043 TREPR_2043 TREPR_2043 2193151 2194662 - hypothetical protein identified by glimmer%3B putative gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2043 TREPR_2044 TREPR_2044 TREPR_2044 2192904 2193131 - hypothetical protein identified by glimmer%3B putative gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2044 TREPR_2045 TREPR_2045 TREPR_2045 2192383 2192904 - hypothetical protein identified by glimmer%3B putative gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2045 TREPR_2046 TREPR_2046 TREPR_2046 2192006 2192386 - hypothetical protein identified by glimmer%3B putative gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2046 TREPR_2047 TREPR_2047 TREPR_2047 2191584 2191967 - putative binding-protein-dependent transport systems inner membrane component gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2047 TREPR_2048 TREPR_2048 TREPR_2048 2191033 2191557 - hypothetical protein identified by glimmer%3B putative gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2048 TREPR_2049 TREPR_2049 TREPR_2049 2188948 2190990 - hypothetical protein identified by glimmer%3B putative gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2049 TREPR_2050 TREPR_2050 TREPR_2050 2188649 2188939 - hypothetical protein identified by glimmer%3B putative gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2050 TREPR_2051 TREPR_2051 TREPR_2051 2188032 2188367 - hypothetical protein identified by glimmer%3B putative gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2051 TREPR_2052 TREPR_2052 TREPR_2052 2186638 2188032 - conserved hypothetical protein identified by match to protein family HMM PF08706%3B match to protein family HMM TIGR01613 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2052 TREPR_2053 TREPR_2053 TREPR_2053 2186366 2186509 - hypothetical protein identified by glimmer%3B putative gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2053 TREPR_2055 TREPR_2055 TREPR_2055 2185960 2186085 - hypothetical protein identified by glimmer%3B putative gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2055 TREPR_2057 TREPR_2057 TREPR_2057 2185042 2185191 - hypothetical protein identified by glimmer%3B putative gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2057 TREPR_2058 TREPR_2058 TREPR_2058 2184901 2185020 - hypothetical protein identified by glimmer%3B putative gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2058 TREPR_2059 TREPR_2059 TREPR_2059 2184732 2184926 - hypothetical protein identified by glimmer%3B putative gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2059 TREPR_2060 TREPR_2060 TREPR_2060 2184428 2184646 - hypothetical protein identified by glimmer%3B putative gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2060 TREPR_2061 TREPR_2061 TREPR_2061 2183502 2184095 - hypothetical protein identified by glimmer%3B putative gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2061 TREPR_2062 TREPR_2062 TREPR_2062 2183168 2183509 - hypothetical protein identified by glimmer%3B putative gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2062 TREPR_2063 TREPR_2063 TREPR_2063 2182963 2183175 - hypothetical protein identified by glimmer%3B putative gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2063 TREPR_2064 TREPR_2064 TREPR_2064 2181654 2182868 - transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2064 TREPR_2065 TREPR_2065 TREPR_2065 2181067 2181528 + MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2065 TREPR_2067 TREPR_2067 TREPR_2067 2179032 2180321 + adenylyl cyclase class-3/4/guanylyl cyclase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00211 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2067 TREPR_2068 TREPR_2068 TREPR_2068 2176506 2179028 + multi-sensor Hybrid Histidine Kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2068 TREPR_2069 TREPR_2069 TREPR_2069 2171966 2176516 + putative multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF07494 gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2069 TREPR_2070 TREPR_2070 dinB dinB 2171613 2171888 + DNA polymerase IV gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2070 TREPR_2071 TREPR_2071 TREPR_2071 2171348 2171605 + hypothetical protein identified by glimmer%3B putative gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2071 TREPR_2072 TREPR_2072 mutT_2 mutT_2 2170754 2171158 + MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2072 TREPR_2073 TREPR_2073 TREPR_2073 2169492 2170757 + aminotransferase class-III identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2073 TREPR_2075 TREPR_2075 TREPR_2075 2154054 2169251 - putative lipoprotein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2075 TREPR_2076 TREPR_2076 TREPR_2076 2152649 2152849 + hypothetical protein identified by glimmer%3B putative gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2076 TREPR_2077 TREPR_2077 TREPR_2077 2152839 2153969 - hypothetical protein identified by glimmer%3B putative gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2077 TREPR_2078 TREPR_2078 TREPR_2078 2150352 2152667 - putative lipoprotein gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2078 TREPR_2079 TREPR_2079 TREPR_2079 2132376 2150243 - hypothetical protein identified by glimmer%3B putative gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2079 TREPR_2080 TREPR_2080 TREPR_2080 2130883 2132121 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2080 TREPR_2081 TREPR_2081 TREPR_2081 2129457 2130758 + putative phage capsid family identified by match to protein family HMM PF05065 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2081 TREPR_2082 TREPR_2082 TREPR_2082 2128720 2129388 + caudovirus prohead protease identified by match to protein family HMM PF04586 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2082 TREPR_2083 TREPR_2083 TREPR_2083 2128025 2128726 + two component transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196%3B match to protein family HMM PF08281 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2083 TREPR_2084 TREPR_2084 TREPR_2084 2126792 2128021 + phage portal protein identified by match to protein family HMM PF04860 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2084 TREPR_2085 TREPR_2085 TREPR_2085 2125575 2126795 + phage terminase%2C large subunit%2C PBSX family identified by match to protein family HMM PF03237%3B match to protein family HMM TIGR01547 gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2085 TREPR_2086 TREPR_2086 TREPR_2086 2125018 2125560 + hypothetical protein identified by glimmer%3B putative gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2086 TREPR_2087 TREPR_2087 TREPR_2087 2124746 2125018 + transcriptional regulator%2C AlpA family identified by match to protein family HMM PF05930 gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2087 TREPR_2088 TREPR_2088 TREPR_2088 2124457 2124657 + hypothetical protein identified by glimmer%3B putative gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2088 TREPR_2089 TREPR_2089 TREPR_2089 2124115 2124366 + fibroin 2%3B this region contains one or more premature stops and/or frameshifts pseudogene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2089 TREPR_2090 TREPR_2090 TREPR_2090 2123916 2124044 + hypothetical protein identified by glimmer%3B putative gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2090 TREPR_2091 TREPR_2091 TREPR_2091 2123776 2123919 + hypothetical protein identified by glimmer%3B putative gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2091 TREPR_2093 TREPR_2093 TREPR_2093 2122946 2123059 + hypothetical protein identified by glimmer%3B putative gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2093 TREPR_2094 TREPR_2094 TREPR_2094 2120996 2122384 + conserved hypothetical protein identified by match to protein family HMM PF08706%3B match to protein family HMM TIGR01613 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2094 TREPR_2095 TREPR_2095 TREPR_2095 2120658 2121011 + conserved hypothetical protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2095 TREPR_2096 TREPR_2096 TREPR_2096 2120365 2120655 + conserved hypothetical protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2096 TREPR_2097 TREPR_2097 TREPR_2097 2118393 2120354 + hypothetical protein identified by glimmer%3B putative gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2097 TREPR_2099 TREPR_2099 TREPR_2099 2117761 2118285 + hypothetical protein identified by glimmer%3B putative gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2099 TREPR_2100 TREPR_2100 TREPR_2100 2117432 2117737 + hypothetical protein identified by glimmer%3B putative gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2100 TREPR_2101 TREPR_2101 TREPR_2101 2117188 2117475 + hypothetical protein identified by glimmer%3B putative gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2101 TREPR_2102 TREPR_2102 TREPR_2102 2116393 2116914 + hypothetical protein identified by glimmer%3B putative gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2102 TREPR_2103 TREPR_2103 TREPR_2103 2116166 2116393 + hypothetical protein identified by glimmer%3B putative gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2103 TREPR_2104 TREPR_2104 TREPR_2104 2114669 2116156 + hypothetical protein identified by glimmer%3B putative gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2104 TREPR_2105 TREPR_2105 TREPR_2105 2113814 2114665 + hypothetical protein identified by glimmer%3B putative gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2105 TREPR_2106 TREPR_2106 TREPR_2106 2113361 2113807 + hypothetical protein identified by glimmer%3B putative gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2106 TREPR_2107 TREPR_2107 TREPR_2107 2112721 2113329 + conserved hypothetical protein identified by match to protein family HMM TIGR02215 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2107 TREPR_2108 TREPR_2108 TREPR_2108 2112106 2112621 + conserved hypothetical protein identified by match to protein family HMM PF07605 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2108 TREPR_2111 TREPR_2111 TREPR_2111 2110234 2111649 - OmpA identified by match to protein family HMM PF00691 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2111 TREPR_2112 TREPR_2112 TREPR_2112 2108509 2110230 - cadherin domain/calx-beta domain protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2112 TREPR_2113 TREPR_2113 TREPR_2113 2105926 2108499 - GLUG domain protein identified by match to protein family HMM PF07581 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2113 TREPR_2114 TREPR_2114 TREPR_2114 2102793 2105747 - GLUG domain protein identified by match to protein family HMM PF07581 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2114 TREPR_2115 TREPR_2115 TREPR_2115 2101846 2102700 - hypothetical protein identified by glimmer%3B putative gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2115 TREPR_2117 TREPR_2117 TREPR_2117 2100720 2100836 - hypothetical protein identified by glimmer%3B putative gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2117 TREPR_2118 TREPR_2118 TREPR_2118 2100543 2100677 - hypothetical protein identified by glimmer%3B putative gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2118 TREPR_2119 TREPR_2119 TREPR_2119 2099859 2100074 - hypothetical protein identified by glimmer%3B putative gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2119 TREPR_2120 TREPR_2120 TREPR_2120 2099451 2099777 - transcriptional regulator%2C sarp family gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2120 TREPR_2121 TREPR_2121 TREPR_2121 2098163 2099140 - hypothetical protein identified by glimmer%3B putative gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2121 TREPR_2122 TREPR_2122 TREPR_2122 2097839 2098141 + DNA polymerase beta domain protein region identified by match to protein family HMM PF01909 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2122 TREPR_2123 TREPR_2123 TREPR_2123 2097429 2097848 + nucleotidyltransferase substrate binding-like protein identified by match to protein family HMM PF08780 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2123 TREPR_2124 TREPR_2124 TREPR_2124 2095892 2097373 + glycogen synthase (Starch [bacterial glycogen]synthase) identified by match to protein family HMM PF00534%3B match to protein family HMM PF08323%3B match to protein family HMM TIGR02095 gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2124 TREPR_2125 TREPR_2125 TREPR_2125 2095399 2095815 + amino acid-binding ACT domain protein identified by match to protein family HMM PF01842 gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2125 TREPR_2126 TREPR_2126 TREPR_2126 2094088 2095389 + phenylacetate-coenzyme A ligase (Phenylacetyl-CoAligase) (PA-CoA ligase) gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2126 TREPR_2127 TREPR_2127 TREPR_2127 2093021 2093992 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2127 TREPR_2128 TREPR_2128 TREPR_2128 2092044 2093024 + dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2128 TREPR_2129 TREPR_2129 TREPR_2129 2091193 2092047 + oligopeptide transport system permease protein AppC identified by match to protein family HMM PF00528 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2129 TREPR_2130 TREPR_2130 TREPR_2130 2090230 2091183 + oligopeptide transport system permease protein AppB identified by match to protein family HMM PF00528 gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2130 TREPR_2131 TREPR_2131 TREPR_2131 2088643 2090208 + oligopeptide ABC transporter%2C oligopeptide- binding protein identified by match to protein family HMM PF00496 gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2131 TREPR_2132 TREPR_2132 TREPR_2132 2088512 2088625 + hypothetical protein identified by glimmer%3B putative gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2132 TREPR_2133 TREPR_2133 TREPR_2133 2087143 2088540 + conserved hypothetical protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2133 TREPR_2134 TREPR_2134 TREPR_2134 2085635 2087131 + conserved hypothetical protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2134 TREPR_2135 TREPR_2135 TREPR_2135 2084623 2085621 + hypothetical protein identified by glimmer%3B putative gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2135 TREPR_2136 TREPR_2136 TREPR_2136 2083545 2084576 + putative lipoprotein gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2136 TREPR_2137 TREPR_2137 TREPR_2137 2082740 2083507 + taurine ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2137 TREPR_2138 TREPR_2138 TREPR_2138 2081888 2082724 + taurine import ATP-binding protein TauB identified by match to protein family HMM PF00005 gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2138 TREPR_2139 TREPR_2139 TREPR_2139 2080671 2081891 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2139 TREPR_2140 TREPR_2140 TREPR_2140 2079389 2080600 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2140 TREPR_2141 TREPR_2141 TREPR_2141 2078351 2079358 + putative lipoprotein gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2141 TREPR_2142 TREPR_2142 TREPR_2142 2077096 2078307 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2142 TREPR_2143 TREPR_2143 TREPR_2143 2076037 2077044 + putative lipoprotein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2143 TREPR_2145 TREPR_2145 TREPR_2145 2074357 2075703 + phenylacetate-coenzyme A ligase (Phenylacetyl-CoAligase) (PA-CoA ligase) gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2145 TREPR_2146 TREPR_2146 TREPR_2146 2073773 2074360 + indolepyruvate oxidoreductase subunit IorB (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit beta) identified by match to protein family HMM PF01558 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2146 TREPR_2147 TREPR_2147 TREPR_2147 2072103 2073776 + indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit alpha) identified by match to protein family HMM PF01855%3B match to protein family HMM PF02775 gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2147 TREPR_2148 TREPR_2148 TREPR_2148 2070559 2072022 + SSS sodium solute transporter superfamily identified by match to protein family HMM PF00474 gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2148 TREPR_2149 TREPR_2149 TREPR_2149 2069508 2070413 - glycosyltransferase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2149 TREPR_2150 TREPR_2150 TREPR_2150 2069258 2069551 - glycosyltransferase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2150 TREPR_2151 TREPR_2151 TREPR_2151 2068075 2069247 - ATP-dependent RNA helicase identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2151 TREPR_2152 TREPR_2152 TREPR_2152 2066715 2068064 + conserved hypothetical protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2152 TREPR_2153 TREPR_2153 TREPR_2153 2065544 2066710 + HD domain protein identified by match to protein family HMM PF01966 gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2153 TREPR_2154 TREPR_2154 TREPR_2154 2064988 2065221 - conserved hypothetical protein gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2154 TREPR_2155 TREPR_2155 TREPR_2155 2064134 2064817 - transposase%2C Mutator family%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00872 pseudogene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2155 TREPR_2156 TREPR_2156 tnpA tnpA 2063886 2064119 - ISSod4%2C transposase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2156 TREPR_2157 TREPR_2157 TREPR_2157 2062643 2063857 - transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2157 TREPR_2158 TREPR_2158 TREPR_2158 2062418 2062540 - transposase%2C mutator family gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2158 TREPR_2159 TREPR_2159 TREPR_2159 2061994 2062329 + putative plasmid stabilization system protein identified by match to protein family HMM PF05016 gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2159 TREPR_2160 TREPR_2160 TREPR_2160 2061714 2061992 + prevent host death protein Phd identified by match to protein family HMM PF02604%3B match to protein family HMM TIGR01552 gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2160 TREPR_2161 TREPR_2161 TREPR_2161 2061251 2061517 + hypothetical protein identified by glimmer%3B putative gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2161 TREPR_2163 TREPR_2163 TREPR_2163 2060695 2060835 + hypothetical protein identified by glimmer%3B putative gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2163 TREPR_2164 TREPR_2164 TREPR_2164 2059780 2060406 + SAM-dependent methyltransferase%2C UbiE family identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2164 TREPR_2166 TREPR_2166 TREPR_2166 2058322 2059512 + hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2166 TREPR_2167 TREPR_2167 TREPR_2167 2058030 2058143 - hypothetical protein identified by glimmer%3B putative gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2167 TREPR_2168 TREPR_2168 TREPR_2168 2057418 2058023 + Fic protein family identified by match to protein family HMM PF02661 gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2168 TREPR_2169 TREPR_2169 TREPR_2169 2057179 2057415 + MobC gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2169 TREPR_2170 TREPR_2170 TREPR_2170 2057000 2057131 + hypothetical protein identified by glimmer%3B putative gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2170 TREPR_2171 TREPR_2171 TREPR_2171 2056565 2056894 + conserved hypothetical protein identified by match to protein family HMM PF02452 gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2171 TREPR_2172 TREPR_2172 TREPR_2172 2056341 2056568 + conserved hypothetical protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2172 TREPR_2173 TREPR_2173 TREPR_2173 2055137 2056057 + hypothetical protein identified by glimmer%3B putative gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2173 TREPR_2176 TREPR_2176 TREPR_2176 2053336 2054565 - transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2176 TREPR_2177 TREPR_2177 TREPR_2177 2052383 2053180 + short chain dehydrogenase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659 gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2177 TREPR_2178 TREPR_2178 TREPR_2178 2051711 2052364 + hypothetical protein identified by glimmer%3B putative gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2178 TREPR_2179 TREPR_2179 TREPR_2179 2050893 2051714 + 4Fe-4S binding domain protein identified by match to protein family HMM PF00037 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2179 TREPR_2180 TREPR_2180 TREPR_2180 2050242 2050808 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2180 TREPR_2181 TREPR_2181 TREPR_2181 2050038 2050190 + hypothetical protein identified by glimmer%3B putative gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2181 TREPR_2182 TREPR_2182 TREPR_2182 2049217 2049771 + conserved hypothetical protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2182 TREPR_2183 TREPR_2183 TREPR_2183 2049061 2049213 + hypothetical protein identified by glimmer%3B putative gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2183 TREPR_2184 TREPR_2184 TREPR_2184 2048338 2048946 - hypothetical protein identified by glimmer%3B putative gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2184 TREPR_2185 TREPR_2185 TREPR_2185 2047904 2048341 - hypothetical protein identified by glimmer%3B putative gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2185 TREPR_2186 TREPR_2186 TREPR_2186 2047044 2047907 - hypothetical protein identified by glimmer%3B putative gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2186 TREPR_2187 TREPR_2187 TREPR_2187 2045551 2047047 - hypothetical protein identified by glimmer%3B putative gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2187 TREPR_2188 TREPR_2188 TREPR_2188 2045275 2045541 - hypothetical protein identified by glimmer%3B putative gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2188 TREPR_2189 TREPR_2189 TREPR_2189 2044599 2045153 - hypothetical protein identified by glimmer%3B putative gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2189 TREPR_2190 TREPR_2190 TREPR_2190 2044429 2044596 - hypothetical protein identified by glimmer%3B putative gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2190 TREPR_2191 TREPR_2191 TREPR_2191 2044152 2044418 - hypothetical protein identified by glimmer%3B putative gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2191 TREPR_2192 TREPR_2192 TREPR_2192 2043872 2044159 - conserved hypothetical protein gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2192 TREPR_2193 TREPR_2193 TREPR_2193 2043631 2043912 - hypothetical protein identified by glimmer%3B putative gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2193 TREPR_2194 TREPR_2194 TREPR_2194 2043079 2043630 - hypothetical protein identified by glimmer%3B putative gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2194 TREPR_2195 TREPR_2195 TREPR_2195 2041280 2043082 - hypothetical protein identified by glimmer%3B putative gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2195 TREPR_2196 TREPR_2196 TREPR_2196 2040976 2041269 - hypothetical protein identified by glimmer%3B putative gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2196 TREPR_2197 TREPR_2197 TREPR_2197 2040638 2040976 - hypothetical protein identified by glimmer%3B putative gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2197 TREPR_2198 TREPR_2198 TREPR_2198 2039179 2040573 - conserved hypothetical protein identified by match to protein family HMM PF08706%3B match to protein family HMM TIGR01613 gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2198 TREPR_2200 TREPR_2200 TREPR_2200 2036195 2037775 - hypothetical protein identified by glimmer%3B putative gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2200 TREPR_2201 TREPR_2201 TREPR_2201 2035460 2035759 + 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2201 TREPR_2202 TREPR_2202 TREPR_2202 2034900 2035307 + iron-sulfur cluster-binding protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2202 TREPR_2203 TREPR_2203 TREPR_2203 2033446 2034636 + hypothetical protein identified by glimmer%3B putative gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2203 TREPR_2204 TREPR_2204 TREPR_2204 2032661 2033203 + SMI1/KNR4 family protein identified by match to protein family HMM PF09346 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2204 TREPR_2206 TREPR_2206 TREPR_2206 2031219 2032406 + phage integrase family protein identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2206 TREPR_2208 TREPR_2208 TREPR_2208 2029030 2030928 + conserved hypothetical protein gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2208 TREPR_2209 TREPR_2209 TREPR_2209 2027151 2029043 + penicillin-binding protein identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM PF03793 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2209 TREPR_2210 TREPR_2210 lepB_3 lepB_3 2026741 2027154 + signal peptidase I identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2210 TREPR_2211 TREPR_2211 TREPR_2211 2025407 2026687 - LysM domain/M23/M37 peptidase domain protein identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2211 TREPR_2212 TREPR_2212 TREPR_2212 2025198 2025323 - hypothetical protein identified by glimmer%3B putative gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2212 TREPR_2213 TREPR_2213 TREPR_2213 2024954 2025148 - hypothetical protein identified by glimmer%3B putative gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2213 TREPR_2214 TREPR_2214 TREPR_2214 2023630 2024949 + serine-type D-Ala-D-Ala carboxypeptidase DacC identified by match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2214 TREPR_2215 TREPR_2215 asnS asnS 2022197 2023624 + asparagine--tRNA ligase identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00457 gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2215 TREPR_2216 TREPR_2216 TREPR_2216 2020559 2021995 - putative pyrogenic exotoxin B identified by match to protein family HMM PF01640 gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2216 TREPR_2217 TREPR_2217 TREPR_2217 2019633 2020481 - hydrolase%2C TatD family identified by match to protein family HMM PF01026 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2217 TREPR_2218 TREPR_2218 TREPR_2218 2018849 2019586 + conserved hypothetical protein gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2218 TREPR_2219 TREPR_2219 TREPR_2219 2017878 2018852 + conserved hypothetical protein gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2219 TREPR_2220 TREPR_2220 TREPR_2220 2017126 2017689 - probable NADPH:quinone oxidoreductase 2 identified by match to protein family HMM PF03358 gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2220 TREPR_2221 TREPR_2221 murG murG 2015898 2017055 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase identified by match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2221 TREPR_2222 TREPR_2222 cvpA cvpA 2015401 2015901 - CvpA family protein identified by match to protein family HMM PF02674 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2222 TREPR_2223 TREPR_2223 TREPR_2223 2014041 2015408 - DNA polymerase III domain protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2223 TREPR_2224 TREPR_2224 TREPR_2224 2012460 2014028 - serine phosphatase identified by match to protein family HMM PF00672%3B match to protein family HMM PF07228 gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2224 TREPR_2225 TREPR_2225 TREPR_2225 2011862 2012434 + anti-sigma F factor antagonist identified by match to protein family HMM PF01740 gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2225 TREPR_2226 TREPR_2226 TREPR_2226 2011343 2011795 + anti-sigma regulatory factor gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2226 TREPR_2227 TREPR_2227 TREPR_2227 2009704 2011104 - transport protein identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2227 TREPR_2228 TREPR_2228 TREPR_2228 2008251 2009471 - sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2228 TREPR_2229 TREPR_2229 TREPR_2229 2006893 2008251 - acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2229 TREPR_2230 TREPR_2230 TREPR_2230 2006169 2006792 - putative lipoprotein gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2230 TREPR_2231 TREPR_2231 TREPR_2231 2004750 2006117 - putative lipoprotein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2231 TREPR_2232 TREPR_2232 TREPR_2232 2004164 2004745 + putative tetratricopeptide repeat protein identified by match to protein family HMM PF00226 gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2232 TREPR_2233 TREPR_2233 TREPR_2233 2003059 2003910 + conserved hypothetical protein identified by match to protein family HMM PF03269 gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2233 TREPR_2234 TREPR_2234 TREPR_2234 2002419 2002595 + hypothetical protein identified by glimmer%3B putative gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2234 TREPR_2235 TREPR_2235 TREPR_2235 2001994 2002293 + protein C15orf40 identified by match to protein family HMM PF02594 gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2235 TREPR_2236 TREPR_2236 TREPR_2236 2001335 2001994 + hypothetical protein identified by glimmer%3B putative gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2236 TREPR_2237 TREPR_2237 TREPR_2237 2000484 2001263 - hypothetical protein identified by glimmer%3B putative gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2237 TREPR_2238 TREPR_2238 TREPR_2238 1998038 1998757 + hydroxyacylglutathione hydrolase (Glyoxalase II) (GlxII) identified by match to protein family HMM PF00753 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2238 TREPR_2239 TREPR_2239 TREPR_2239 1998754 2000472 - putative lipoprotein gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2239 TREPR_2240 TREPR_2240 TREPR_2240 1997444 1998037 + pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2240 TREPR_2241 TREPR_2241 TREPR_2241 1997031 1997423 - conserved hypothetical protein gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2241 TREPR_2242 TREPR_2242 murI murI 1996132 1997025 - glutamate racemase identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067 gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2242 TREPR_2243 TREPR_2243 rsgA rsgA 1995200 1996135 - ribosome small subunit-dependent GTPase A identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2243 TREPR_2244 TREPR_2244 TREPR_2244 1992523 1995207 - MutS2 family protein identified by match to protein family HMM PF00488%3B match to protein family HMM PF01713 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2244 TREPR_2245 TREPR_2245 TREPR_2245 1992013 1992519 + TM2 domain protein identified by match to protein family HMM PF05154 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2245 TREPR_2246 TREPR_2246 TREPR_2246 1991844 1991969 + hypothetical protein identified by glimmer%3B putative gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2246 TREPR_2247 TREPR_2247 TREPR_2247 1990481 1991872 + conserved hypothetical protein identified by match to protein family HMM PF03961 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2247 TREPR_2248 TREPR_2248 TREPR_2248 1989782 1990255 - transcriptional regulator identified by match to protein family HMM PF01316%3B match to protein family HMM PF02863 gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2248 TREPR_2249 TREPR_2249 pgi pgi 1988127 1989701 - glucose-6-phosphate isomerase identified by match to protein family HMM PF00342 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2249 TREPR_2250 TREPR_2250 TREPR_2250 1987546 1988097 - conserved hypothetical protein gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2250 TREPR_2251 TREPR_2251 TREPR_2251 1987378 1987521 + conserved hypothetical protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2251 TREPR_2252 TREPR_2252 TREPR_2252 1986437 1987321 + conserved hypothetical protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2252 TREPR_2253 TREPR_2253 TREPR_2253 1983685 1986411 + Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1) identified by match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM PF07717 gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2253 TREPR_2255 TREPR_2255 ppdK ppdK 1980571 1983579 - pyruvate%2C phosphate dikinase identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01828 gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2255 TREPR_2258 TREPR_2258 TREPR_2258 1978806 1980161 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2258 TREPR_2259 TREPR_2259 TREPR_2259 1977682 1978347 - hypothetical protein identified by glimmer%3B putative gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2259 TREPR_2260 TREPR_2260 TREPR_2260 1977404 1977607 - phage transcriptional regulator%2C AlpA identified by match to protein family HMM TIGR01764 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2260 TREPR_2261 TREPR_2261 TREPR_2261 1977204 1977425 - hypothetical protein identified by glimmer%3B putative gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2261 TREPR_2262 TREPR_2262 TREPR_2262 1976879 1977214 - hypothetical protein identified by glimmer%3B putative gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2262 TREPR_2263 TREPR_2263 TREPR_2263 1975443 1976879 - conserved hypothetical protein identified by match to protein family HMM PF08706%3B match to protein family HMM TIGR01613 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2263 TREPR_2264 TREPR_2264 TREPR_2264 1974955 1975176 + hypothetical protein identified by glimmer%3B putative gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2264 TREPR_2265 TREPR_2265 TREPR_2265 1973490 1974191 + conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2265 TREPR_2266 TREPR_2266 TREPR_2266 1973172 1973393 + glycoprotein G gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2266 TREPR_2267 TREPR_2267 TREPR_2267 1972618 1972737 - hypothetical protein identified by glimmer%3B putative gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2267 TREPR_2268 TREPR_2268 TREPR_2268 1971114 1972328 - transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2268 TREPR_2269 TREPR_2269 TREPR_2269 1967526 1971092 + hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2269 TREPR_2270 TREPR_2270 TREPR_2270 1966524 1967507 + conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2270 TREPR_2271 TREPR_2271 TREPR_2271 1965740 1965997 + conserved hypothetical protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2271 TREPR_2272 TREPR_2272 TREPR_2272 1965994 1966125 - hypothetical protein identified by glimmer%3B putative gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2272 TREPR_2273 TREPR_2273 TREPR_2273 1964275 1965606 - conserved hypothetical protein gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2273 TREPR_2274 TREPR_2274 TREPR_2274 1962951 1964027 + conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2274 TREPR_2275 TREPR_2275 TREPR_2275 1964019 1964252 - hypothetical protein identified by glimmer%3B putative gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2275 TREPR_2276 TREPR_2276 TREPR_2276 1962714 1962950 + putative transcriptional regulator%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2276 TREPR_2278 TREPR_2278 TREPR_2278 1960885 1962576 + conserved hypothetical protein identified by match to protein family HMM PF03235 gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2278 TREPR_2279 TREPR_2279 TREPR_2279 1958000 1960852 + conserved hypothetical protein gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2279 TREPR_2280 TREPR_2280 TREPR_2280 1954771 1958007 + HsdR identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2280 TREPR_2281 TREPR_2281 TREPR_2281 1953899 1954774 + putative DNA-binding protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2281 TREPR_2282 TREPR_2282 TREPR_2282 1952760 1953902 + hypothetical protein identified by glimmer%3B putative gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2282 TREPR_2283 TREPR_2283 TREPR_2283 1951205 1952773 + type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2283 TREPR_2284 TREPR_2284 TREPR_2284 1950800 1951021 - hypothetical protein identified by glimmer%3B putative gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2284 TREPR_2285 TREPR_2285 TREPR_2285 1948866 1950875 - conserved hypothetical protein gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2285 TREPR_2286 TREPR_2286 TREPR_2286 1947809 1948873 - hypothetical protein identified by glimmer%3B putative gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2286 TREPR_2288 TREPR_2288 TREPR_2288 1947229 1947405 - conserved hypothetical protein gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2288 TREPR_2289 TREPR_2289 TREPR_2289 1946660 1946830 - hypothetical protein identified by glimmer%3B putative gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2289 TREPR_2290 TREPR_2290 TREPR_2290 1946382 1946690 - divergent AAA ATPase gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2290 TREPR_2291 TREPR_2291 TREPR_2291 1944450 1946159 + putative tetratricopeptide TPR_2 repeat protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2291 TREPR_2292 TREPR_2292 TREPR_2292 1942852 1944453 + hypothetical protein identified by glimmer%3B putative gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2292 TREPR_2293 TREPR_2293 TREPR_2293 1942558 1942677 + hypothetical protein identified by glimmer%3B putative gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2293 TREPR_2294 TREPR_2294 TREPR_2294 1940097 1942580 + halomucin%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF07581 pseudogene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2294 TREPR_2295 TREPR_2295 TREPR_2295 1939151 1940137 + hypothetical protein identified by glimmer%3B putative gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2295 TREPR_2296 TREPR_2296 TREPR_2296 1938354 1939061 + conserved hypothetical protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2296 TREPR_2297 TREPR_2297 TREPR_2297 1937142 1938341 + hypothetical protein identified by glimmer%3B putative gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2297 TREPR_2298 TREPR_2298 TREPR_2298 1936666 1937145 + hypothetical protein identified by glimmer%3B putative gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2298 TREPR_2299 TREPR_2299 TREPR_2299 1934703 1936628 + GLUG domain protein identified by match to protein family HMM PF07581 gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2299 TREPR_2300 TREPR_2300 TREPR_2300 1933867 1934538 + two-component response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2300 TREPR_2301 TREPR_2301 TREPR_2301 1930624 1933788 + multi-sensor Hybrid Histidine Kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2301 TREPR_2302 TREPR_2302 TREPR_2302 1929117 1930469 + transcriptional regulator%2C LuxR family protein identified by match to protein family HMM PF00196 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2302 TREPR_2303 TREPR_2303 TREPR_2303 1927791 1929104 + putative bacterial extracellular solute-binding protein identified by match to protein family HMM PF01547 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2303 TREPR_2304 TREPR_2304 TREPR_2304 1927527 1927649 - hypothetical protein identified by glimmer%3B putative gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2304 TREPR_2305 TREPR_2305 TREPR_2305 1927054 1927443 - conserved hypothetical protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2305 TREPR_2306 TREPR_2306 TREPR_2306 1926287 1927057 - daunorubicin resistance ATP-binding protein DrrA identified by match to protein family HMM PF00005 gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2306 TREPR_2307 TREPR_2307 TREPR_2307 1925490 1926290 - ABC transporter family protein identified by match to protein family HMM PF01061 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2307 TREPR_2308 TREPR_2308 TREPR_2308 1924923 1925342 - sigma-24%2C ECF subfamily identified by match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2308 TREPR_2309 TREPR_2309 TREPR_2309 1923383 1924819 - putative signaling protein identified by match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2309 TREPR_2310 TREPR_2310 TREPR_2310 1922427 1923326 + putative lipoprotein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2310 TREPR_2311 TREPR_2311 ogt ogt 1921919 1922434 + methylated-DNA--[protein]-cysteine S-methyltransferase identified by match to protein family HMM PF01035%3B match to protein family HMM TIGR00589 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2311 TREPR_2312 TREPR_2312 TREPR_2312 1921375 1921941 + methylphosphotriester-DNA alkyltransferase identified by match to protein family HMM PF00165%3B match to protein family HMM PF02805 gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2312 TREPR_2313 TREPR_2313 TREPR_2313 1920728 1921378 + methylated-DNA--[protein]-cysteine S-methyltransferase identified by match to protein family HMM PF00730 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2313 TREPR_2315 TREPR_2315 TREPR_2315 1919709 1920482 + hypothetical protein identified by glimmer%3B putative gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2315 TREPR_2316 TREPR_2316 TREPR_2316 1918157 1919716 + membrane protein identified by match to protein family HMM PF07556 gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2316 TREPR_2317 TREPR_2317 TREPR_2317 1917517 1917984 - conserved hypothetical protein identified by match to protein family HMM PF03692 gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2317 TREPR_2318 TREPR_2318 TREPR_2318 1916576 1917517 - metallo-beta-lactamase family protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2318 TREPR_2319 TREPR_2319 TREPR_2319 1915473 1916573 - aminodeoxychorismate lyase identified by match to protein family HMM PF02618%3B match to protein family HMM TIGR00247 gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2319 TREPR_2320 TREPR_2320 TREPR_2320 1913569 1915473 - DNA primase identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM PF08275%3B match to protein family HMM TIGR01391 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2320 TREPR_2321 TREPR_2321 TREPR_2321 1911803 1913572 - RNA polymerase sigma factor RpoD (Sigma-70) identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2321 TREPR_2322 TREPR_2322 TREPR_2322 1910504 1910851 + hypothetical protein identified by glimmer%3B putative gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2322 TREPR_2323 TREPR_2323 TREPR_2323 1910839 1911681 - putative zinc ribbon domain family identified by match to protein family HMM PF02591 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2323 TREPR_2324 TREPR_2324 TREPR_2324 1909093 1910043 - putative TPR domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2324 TREPR_2325 TREPR_2325 TREPR_2325 1908058 1909083 - Rod shape-determining protein MreB identified by match to protein family HMM PF06723%3B match to protein family HMM TIGR00904 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2325 TREPR_2326 TREPR_2326 mreC mreC 1907149 1908039 - rod shape-determining protein MreC identified by match to protein family HMM PF04085%3B match to protein family HMM TIGR00219 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2326 TREPR_2327 TREPR_2327 mreD mreD 1906653 1907156 - rod shape-determining protein MreD identified by match to protein family HMM PF04093%3B match to protein family HMM TIGR03426 gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2327 TREPR_2328 TREPR_2328 mrdA mrdA 1904776 1906653 - penicillin-binding protein 2 identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM TIGR03423 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2328 TREPR_2329 TREPR_2329 mrdB mrdB 1903469 1904779 - rod shape-determining protein RodA identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02210 gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2329 TREPR_2330 TREPR_2330 TREPR_2330 1901017 1903467 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2330 TREPR_2331 TREPR_2331 TREPR_2331 1899858 1901012 + thermostable carboxypeptidase 1 identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2331 TREPR_2332 TREPR_2332 TREPR_2332 1898985 1899845 + nlpa lipoprotein identified by match to protein family HMM PF03180 gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2332 TREPR_2333 TREPR_2333 TREPR_2333 1898288 1898968 + D-methionine transport system permease protein MetI identified by match to protein family HMM PF00528 gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2333 TREPR_2334 TREPR_2334 TREPR_2334 1897221 1898291 + methionine import ATP-binding protein MetN identified by match to protein family HMM PF00005%3B match to protein family HMM PF09383 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2334 TREPR_2335 TREPR_2335 TREPR_2335 1897020 1897175 + hypothetical protein identified by glimmer%3B putative gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2335 TREPR_2336 TREPR_2336 TREPR_2336 1896239 1897030 + putative lipoprotein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2336 TREPR_2337 TREPR_2337 TREPR_2337 1895547 1896236 + putative TPR domain protein identified by match to protein family HMM PF00515 gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2337 TREPR_2338 TREPR_2338 nifA_2 nifA_2 1894030 1895544 + Nif-specific regulatory protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2338 TREPR_2339 TREPR_2339 TREPR_2339 1891608 1894004 + cytidylate kinase/ribosomal protein S1 identified by match to protein family HMM PF00575%3B match to protein family HMM PF02224%3B match to protein family HMM TIGR00017%3B match to protein family HMM TIGR00717 gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2339 TREPR_2340 TREPR_2340 TREPR_2340 1890782 1891624 + RNA pseudouridylate synthase family protein identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2340 TREPR_2341 TREPR_2341 scpB scpB 1890253 1890798 + segregation and condensation protein B identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2341 TREPR_2342 TREPR_2342 TREPR_2342 1889450 1890253 + ScpA/B protein identified by match to protein family HMM PF02616 gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2342 TREPR_2343 TREPR_2343 TREPR_2343 1888139 1889362 + N-acyl-L-amino acid amidohydrolase identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2343 TREPR_2344 TREPR_2344 TREPR_2344 1886725 1888125 + protein RecA (Recombinase A) identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012 gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2344 TREPR_2345 TREPR_2345 TREPR_2345 1884921 1886639 + putative lipoprotein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2345 TREPR_2346 TREPR_2346 TREPR_2346 1884469 1884810 + hypothetical protein identified by glimmer%3B putative gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2346 TREPR_2347 TREPR_2347 mutT_1 mutT_1 1883010 1883387 + MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2347 TREPR_2348 TREPR_2348 TREPR_2348 1883380 1884417 - hypothetical protein identified by glimmer%3B putative gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2348 TREPR_2349 TREPR_2349 TREPR_2349 1882578 1882988 + conserved hypothetical protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2349 TREPR_2350 TREPR_2350 TREPR_2350 1881706 1882284 + hypothetical protein identified by glimmer%3B putative gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2350 TREPR_2351 TREPR_2351 TREPR_2351 1880479 1881681 + putative lipoprotein gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2351 TREPR_2352 TREPR_2352 secA secA 1877578 1880358 - preprotein translocase%2C SecA subunit identified by match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2352 TREPR_2353 TREPR_2353 TREPR_2353 1876231 1877463 + hypothetical protein identified by glimmer%3B putative gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2353 TREPR_2354 TREPR_2354 TREPR_2354 1875713 1876216 + hypothetical protein identified by glimmer%3B putative gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2354 TREPR_2355 TREPR_2355 TREPR_2355 1875071 1875613 - transcription antitermination protein%2C NusG family identified by match to protein family HMM PF02357 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2355 TREPR_2356 TREPR_2356 TREPR_2356 1873512 1875050 - capsular polysaccharide biosynthesis protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2356 TREPR_2357 TREPR_2357 TREPR_2357 1872272 1873522 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase identified by match to protein family HMM PF01041%3B UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase%3B UDP-Ara4O aminotransferase%3B Polymyxin resistanceprotein PmrH gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2357 TREPR_2358 TREPR_2358 TREPR_2358 1870162 1872252 - putative aldehyde oxidase and xanthine dehydrogenase family protein identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2358 TREPR_2359 TREPR_2359 TREPR_2359 1869680 1870165 - isoquinoline 1-oxidoreductase subunit alpha identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2359 TREPR_2360 TREPR_2360 TREPR_2360 1868857 1869696 - molybdopterin dehydrogenase%2C FAD-binding%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00941 pseudogene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2360 TREPR_2361 TREPR_2361 TREPR_2361 1868067 1868645 - hypothetical protein identified by glimmer%3B putative gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2361 TREPR_2362 TREPR_2362 TREPR_2362 1866922 1868055 - 3-dehydroquinate synthase identified by match to protein family HMM PF01761 gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2362 TREPR_2363 TREPR_2363 TREPR_2363 1865294 1866925 - hypothetical protein identified by glimmer%3B putative gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2363 TREPR_2364 TREPR_2364 TREPR_2364 1863986 1865284 - phosphoenolpyruvate mutase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR02320 gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2364 TREPR_2365 TREPR_2365 aepY aepY 1862860 1863981 - phosphonopyruvate decarboxylase identified by match to protein family HMM PF02775%3B match to protein family HMM TIGR03297 gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2365 TREPR_2366 TREPR_2366 TREPR_2366 1861032 1862846 - nucleotidyl transferase/aminotransferase%2C class V identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR03301 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2366 TREPR_2367 TREPR_2367 TREPR_2367 1859697 1861028 - UDP-glucose 6-dehydrogenase identified by match to protein family HMM PF00984%3B match to protein family HMM PF02737%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2367 TREPR_2368 TREPR_2368 TREPR_2368 1858622 1859689 - UDP-glucuronate 5'-epimerase (UDP-glucuronic acidepimerase) identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2368 TREPR_2369 TREPR_2369 TREPR_2369 1857784 1858629 - ABC transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2369 TREPR_2370 TREPR_2370 TREPR_2370 1856133 1857794 - hypothetical protein identified by glimmer%3B putative gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2370 TREPR_2371 TREPR_2371 TREPR_2371 1854739 1856019 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2371 TREPR_2372 TREPR_2372 TREPR_2372 1853911 1854726 - hypothetical protein identified by glimmer%3B putative gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2372 TREPR_2373 TREPR_2373 rfbF rfbF 1853127 1853909 - glucose-1-phosphate cytidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02623 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2373 TREPR_2374 TREPR_2374 rfbG rfbG 1852078 1853151 - CDP-glucose 4%2C6-dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02622 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2374 TREPR_2375 TREPR_2375 TREPR_2375 1850748 1852085 - DegT/DnrJ/EryC1/StrS aminotransferase identified by match to protein family HMM PF01041 gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2375 TREPR_2376 TREPR_2376 TREPR_2376 1850131 1850670 - dTDP-4-dehydrorhamnose 3%2C5-epimerase identified by match to protein family HMM PF00908 gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2376 TREPR_2377 TREPR_2377 TREPR_2377 1849274 1850128 - paratose synthase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370 gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2377 TREPR_2378 TREPR_2378 TREPR_2378 1847449 1849179 - glycosyltransferase%2C group 2 family identified by match to protein family HMM PF00535 gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2378 TREPR_2379 TREPR_2379 TREPR_2379 1846281 1847135 - hypothetical protein identified by glimmer%3B putative gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2379 TREPR_2380 TREPR_2380 TREPR_2380 1845376 1846272 - glycosyltransferase%2C group 2 family identified by match to protein family HMM PF00535 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2380 TREPR_2381 TREPR_2381 TREPR_2381 1843751 1845331 - nucleotide-diphospho-sugar transferase domain protein identified by match to protein family HMM PF00132 gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2381 TREPR_2382 TREPR_2382 rfbA rfbA 1842868 1843743 - glucose-1-phosphate thymidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01207 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2382 TREPR_2383 TREPR_2383 rfbC rfbC 1842335 1842868 - dTDP-4-dehydrorhamnose 3%2C5-epimerase identified by match to protein family HMM PF00908%3B match to protein family HMM TIGR01221 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2383 TREPR_2384 TREPR_2384 rfbD rfbD 1841451 1842338 - dTDP-4-dehydrorhamnose reductase identified by match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM TIGR01214 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2384 TREPR_2385 TREPR_2385 rfbB rfbB 1840375 1841496 - dTDP-glucose 4%2C6-dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181 gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2385 TREPR_2386 TREPR_2386 TREPR_2386 1839385 1840347 - UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UGD) (UXS-1) identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2386 TREPR_2387 TREPR_2387 gmd gmd 1838283 1839368 - GDP-mannose 4%2C6-dehydratase identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2387 TREPR_2388 TREPR_2388 fcl fcl 1837331 1838317 - GDP-L-fucose synthase identified by match to protein family HMM PF01370 gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2388 TREPR_2389 TREPR_2389 TREPR_2389 1836405 1837325 - glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2389 TREPR_2390 TREPR_2390 TREPR_2390 1835374 1836393 - hypothetical protein identified by glimmer%3B putative gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2390 TREPR_2391 TREPR_2391 TREPR_2391 1834294 1835361 - glycosyltransferase%2C group 2 family identified by match to protein family HMM PF00535 gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2391 TREPR_2392 TREPR_2392 TREPR_2392 1833068 1834282 - transposase%2C Mutator family identified by match to protein family HMM PF00872 gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2392 TREPR_2393 TREPR_2393 TREPR_2393 1831825 1833033 - glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2393 TREPR_2394 TREPR_2394 TREPR_2394 1830842 1831828 - hypothetical protein identified by glimmer%3B putative gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2394 TREPR_2395 TREPR_2395 TREPR_2395 1829781 1830842 - glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2395 TREPR_2396 TREPR_2396 TREPR_2396 1828711 1829745 - D-glycero-D-manno-heptose 7-phosphate kinase identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2396 TREPR_2397 TREPR_2397 TREPR_2397 1828100 1828732 - phosphoheptose isomerase identified by match to protein family HMM PF01380 gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2397 TREPR_2398 TREPR_2398 TREPR_2398 1826796 1828103 - conserved hypothetical protein identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2398 TREPR_2399 TREPR_2399 TREPR_2399 1824112 1826802 - inner membrane protein identified by match to protein family HMM PF02096 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2399 TREPR_2400 TREPR_2400 TREPR_2400 1822889 1824115 - CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase family identified by match to protein family HMM PF04464 gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2400 TREPR_2401 TREPR_2401 TREPR_2401 1821825 1822793 - glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2401 TREPR_2402 TREPR_2402 TREPR_2402 1819105 1821828 - inner membrane protein identified by match to protein family HMM PF02096 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2402 TREPR_2403 TREPR_2403 TREPR_2403 1816366 1819089 - inner membrane protein identified by match to protein family HMM PF02096%3B match to protein family HMM TIGR03592 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2403 TREPR_2404 TREPR_2404 TREPR_2404 1813661 1816354 - inner membrane protein identified by match to protein family HMM PF02096%3B match to protein family HMM TIGR03592 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2404 TREPR_2405 TREPR_2405 TREPR_2405 1812554 1813651 - glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2405 TREPR_2406 TREPR_2406 TREPR_2406 1810687 1812552 + hypothetical protein identified by glimmer%3B putative gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2406 TREPR_2407 TREPR_2407 TREPR_2407 1808960 1810663 + hypothetical protein identified by glimmer%3B putative gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2407 TREPR_2408 TREPR_2408 TREPR_2408 1807428 1808969 - undecaprenyl-phosphate galactose phosphotransferase identified by match to protein family HMM PF02397%3B match to protein family HMM TIGR03022%3B match to protein family HMM TIGR03025 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2408 TREPR_2409 TREPR_2409 TREPR_2409 1806648 1807424 - hypothetical protein identified by glimmer%3B putative gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2409 TREPR_2411 TREPR_2411 TREPR_2411 1805629 1806438 + HhH-GPD family protein identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2411 TREPR_2412 TREPR_2412 TREPR_2412 1805094 1805627 + putative cytidylate kinase identified by match to protein family HMM PF01202%3B match to protein family HMM TIGR02173 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2412 TREPR_2413 TREPR_2413 TREPR_2413 1804231 1805097 + conserved hypothetical protein identified by match to protein family HMM PF03755%3B match to protein family HMM PF08340%3B match to protein family HMM TIGR00255 gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2413 TREPR_2414 TREPR_2414 murC murC 1802780 1804234 + UDP-N-acetylmuramate--L-alanine ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01082 gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2414 TREPR_2415 TREPR_2415 TREPR_2415 1801909 1802742 + ribosomal large subunit pseudouridine synthase D identified by match to protein family HMM PF00849 gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2415 TREPR_2416 TREPR_2416 TREPR_2416 1801053 1801901 + hypothetical protein identified by glimmer%3B putative gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2416 TREPR_2418 TREPR_2418 aroH aroH 1800377 1800748 + chorismate mutase identified by match to protein family HMM PF07736%3B match to protein family HMM TIGR01796 gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2418 TREPR_2419 TREPR_2419 TREPR_2419 1800027 1800380 + hypothetical protein identified by glimmer%3B putative gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2419 TREPR_2420 TREPR_2420 TREPR_2420 1799148 1799939 - conserved hypothetical protein gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2420 TREPR_2421 TREPR_2421 TREPR_2421 1798415 1799047 - conserved hypothetical protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2421 TREPR_2422 TREPR_2422 TREPR_2422 1797189 1798400 - putative lipoprotein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2422 TREPR_2423 TREPR_2423 TREPR_2423 1794834 1797158 - ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2423 TREPR_2424 TREPR_2424 TREPR_2424 1792616 1794826 + two-component system hybrid sensor histidine kinase/response regulator protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229 pseudogene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2424 TREPR_2425 TREPR_2425 TREPR_2425 1791446 1792606 + conserved hypothetical protein identified by match to protein family HMM PF08495 gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2425 TREPR_2426 TREPR_2426 TREPR_2426 1790293 1791318 + endoglucanase M (EGM) (Endo-1%2C4-beta-glucanase)(Cellulase M) identified by match to protein family HMM PF02127%3B match to protein family HMM PF05343 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2426 TREPR_2427 TREPR_2427 TREPR_2427 1789236 1790291 + peptidase M42 identified by match to protein family HMM PF01546%3B match to protein family HMM PF05343 gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2427 TREPR_2428 TREPR_2428 TREPR_2428 1788227 1789246 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2428 TREPR_2429 TREPR_2429 TREPR_2429 1787214 1788230 + dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2429 TREPR_2430 TREPR_2430 TREPR_2430 1786340 1787212 + glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2430 TREPR_2431 TREPR_2431 TREPR_2431 1785388 1786329 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2431 TREPR_2432 TREPR_2432 TREPR_2432 1783746 1785296 + putative dipeptide-binding abc transporter protein identified by match to protein family HMM PF00496 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2432 TREPR_2433 TREPR_2433 TREPR_2433 1782155 1783702 + putative ABC transporter component identified by match to protein family HMM PF00496 gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2433 TREPR_2434 TREPR_2434 gpmI gpmI 1780316 1781971 + 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2434 TREPR_2435 TREPR_2435 TREPR_2435 1777638 1780277 + adenylate/guanylate cyclase catalytic domain protein identified by match to protein family HMM PF00211 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2435 TREPR_2436 TREPR_2436 TREPR_2436 1773710 1777471 + putative extracellular nuclease identified by match to protein family HMM PF02415%3B match to protein family HMM TIGR01376 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2436 TREPR_2437 TREPR_2437 TREPR_2437 1772725 1773690 + putative lipoprotein gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2437 TREPR_2438 TREPR_2438 TREPR_2438 1772025 1772750 + conserved hypothetical protein gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2438 TREPR_2439 TREPR_2439 TREPR_2439 1770750 1771997 + hypothetical protein identified by glimmer%3B putative gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2439 TREPR_2440 TREPR_2440 TREPR_2440 1770337 1770753 + hypothetical protein identified by glimmer%3B putative gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2440 TREPR_2441 TREPR_2441 TREPR_2441 1769420 1770199 + methyltransferase type 11 identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2441 TREPR_2442 TREPR_2442 gyrA_1 gyrA_1 1767503 1769419 + DNA gyrase%2C A subunit identified by match to protein family HMM PF00521 gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2442 TREPR_2443 TREPR_2443 TREPR_2443 1765962 1767353 - permease%2C GntP family identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600 gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2443 TREPR_2444 TREPR_2444 TREPR_2444 1763765 1765882 + V-type H(+)-translocating pyrophosphatase identified by match to protein family HMM PF03030%3B match to protein family HMM TIGR01104 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2444 TREPR_2445 TREPR_2445 TREPR_2445 1761618 1763690 + DNA topoisomerase II (N- region) domain protein identified by match to protein family HMM PF00204%3B match to protein family HMM PF02518 gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2445 TREPR_2446 TREPR_2446 TREPR_2446 1760402 1761556 + hypothetical protein identified by glimmer%3B putative gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2446 TREPR_2447 TREPR_2447 TREPR_2447 1758246 1760333 - translation elongation factor G identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2447 TREPR_2449 TREPR_2449 TREPR_2449 1757540 1758055 + putative DinB family protein identified by match to protein family HMM PF05163 gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2449 TREPR_2450 TREPR_2450 TREPR_2450 1756102 1757445 + citrate synthase domain protein identified by match to protein family HMM PF00285 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2450 TREPR_2451 TREPR_2451 TREPR_2451 1753128 1755923 + sensory transduction histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2451 TREPR_2452 TREPR_2452 tpiA tpiA 1752320 1753072 + triose-phosphate isomerase identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419 gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2452 TREPR_2453 TREPR_2453 pgk_1 pgk_1 1750940 1752202 + phosphoglycerate kinase identified by match to protein family HMM PF00162 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2453 TREPR_2454 TREPR_2454 gap gap 1749805 1750863 + glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2454 TREPR_2455 TREPR_2455 TREPR_2455 1749230 1749601 - peptidase M52%2C hydrogen uptake protein identified by match to protein family HMM PF01627 gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2455 TREPR_2456 TREPR_2456 TREPR_2456 1748179 1749240 - response regulator receiver:Metal-dependent phosphohydrolase HD domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2456 TREPR_2457 TREPR_2457 TREPR_2457 1746254 1747513 + RelA/SpoT domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF04607%3B match to protein family HMM PF07719 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2457 TREPR_2458 TREPR_2458 TREPR_2458 1745135 1746157 + flagellar filament outer layer protein (Sheath protein) identified by match to protein family HMM PF04620 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2458 TREPR_2459 TREPR_2459 TREPR_2459 1744482 1745054 + hypothetical protein identified by glimmer%3B putative gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2459 TREPR_2460 TREPR_2460 TREPR_2460 1743256 1744485 + N-acetylmuramoyl-L-alanine amidase%2C family 3 identified by match to protein family HMM PF01520 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2460 TREPR_2461 TREPR_2461 TREPR_2461 1741622 1743259 + CarB family protein identified by match to protein family HMM PF01071%3B match to protein family HMM PF02655 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2461 TREPR_2462 TREPR_2462 TREPR_2462 1739688 1741652 + cytidylyltransferase domain protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 pseudogene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2462 TREPR_2463 TREPR_2463 TREPR_2463 1738930 1739691 + spore coat polysaccharide biosynthesis protein SpsF identified by match to protein family HMM PF02348 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2463 TREPR_2464 TREPR_2464 TREPR_2464 1737797 1738933 + conserved hypothetical protein gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2464 TREPR_2465 TREPR_2465 TREPR_2465 1736257 1737822 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2465 TREPR_2466 TREPR_2466 xseA xseA 1734831 1736198 - exodeoxyribonuclease VII%2C large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2466 TREPR_2467 TREPR_2467 xseB xseB 1734586 1734819 - exodeoxyribonuclease VII%2C small subunit identified by match to protein family HMM PF02609 gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2467 TREPR_2468 TREPR_2468 TREPR_2468 1732628 1734586 - DNA mismatch repair protein identified by match to protein family HMM PF01119%3B match to protein family HMM PF08676%3B match to protein family HMM TIGR00585 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2468 TREPR_2469 TREPR_2469 TREPR_2469 1731553 1732626 + RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2469 TREPR_2470 TREPR_2470 TREPR_2470 1730572 1731486 + LysM domain/M23/M37 peptidase domain protein identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2470 TREPR_2471 TREPR_2471 TREPR_2471 1729727 1730470 - adenylate cyclase identified by match to protein family HMM PF01928 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2471 TREPR_2472 TREPR_2472 TREPR_2472 1729111 1729413 + conserved domain protein identified by match to protein family HMM PF01381 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2472 TREPR_2473 TREPR_2473 TREPR_2473 1728895 1729044 - hypothetical protein identified by glimmer%3B putative gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2473 TREPR_2474 TREPR_2474 TREPR_2474 1728326 1728898 - putative lipoprotein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2474 TREPR_2475 TREPR_2475 TREPR_2475 1727849 1728280 - hypothetical protein identified by glimmer%3B putative gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2475 TREPR_2476 TREPR_2476 TREPR_2476 1726593 1727387 - prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2476 TREPR_2477 TREPR_2477 TREPR_2477 1725704 1726195 - CMP/dCMP deaminase%2C zinc-binding protein identified by match to protein family HMM PF00383 gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2477 TREPR_2478 TREPR_2478 TREPR_2478 1724613 1725620 + conserved hypothetical protein gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2478 TREPR_2479 TREPR_2479 TREPR_2479 1722933 1723937 + putative RNA ligase identified by match to protein family HMM PF09513 gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2479 TREPR_2481 TREPR_2481 TREPR_2481 1722095 1722823 + putative membrane protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2481 TREPR_2482 TREPR_2482 TREPR_2482 1721287 1722033 - two-component system sensor kinase identified by match to protein family HMM PF02518 gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2482 TREPR_2483 TREPR_2483 TREPR_2483 1720655 1721323 - two component transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF08281 gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2483 TREPR_2484 TREPR_2484 TREPR_2484 1718390 1720558 - putative lipoprotein gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2484 TREPR_2485 TREPR_2485 TREPR_2485 1716687 1717979 + HemN C- region family identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969 gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2485 TREPR_2486 TREPR_2486 TREPR_2486 1717950 1718135 - hypothetical protein identified by glimmer%3B putative gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2486 TREPR_2487 TREPR_2487 lepB_2 lepB_2 1715952 1716680 + signal peptidase I identified by match to protein family HMM TIGR02227 gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2487 TREPR_2488 TREPR_2488 lepB_1 lepB_1 1714881 1715930 + signal peptidase I identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2488 TREPR_2489 TREPR_2489 TREPR_2489 1713307 1714875 - conserved hypothetical protein identified by match to protein family HMM PF08308 gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2489 TREPR_2490 TREPR_2490 smpB smpB 1712849 1713310 - SsrA-binding protein identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086 gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2490 TREPR_2491 TREPR_2491 TREPR_2491 1711933 1712754 - hypothetical protein identified by glimmer%3B putative gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2491 TREPR_2492 TREPR_2492 TREPR_2492 1711462 1711917 + putative septum formation initiator subfamily identified by match to protein family HMM PF04977 gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2492 TREPR_2493 TREPR_2493 TREPR_2493 1709193 1711295 - conserved hypothetical protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2493 TREPR_2494 TREPR_2494 TREPR_2494 1708273 1709193 - hypothetical protein identified by glimmer%3B putative gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2494 TREPR_2495 TREPR_2495 TREPR_2495 1706703 1708271 - conserved hypothetical protein gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2495 TREPR_2496 TREPR_2496 TREPR_2496 1705031 1706710 - conserved hypothetical protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2496 TREPR_2497 TREPR_2497 xylA xylA 1703641 1704981 + xylose isomerase identified by match to protein family HMM PF01261%3B match to protein family HMM TIGR02630 gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2497 TREPR_2498 TREPR_2498 xylB xylB 1702108 1703598 + xylulokinase identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01312 gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2498 TREPR_2499 TREPR_2499 TREPR_2499 1701186 1702097 + protein of unknown function DUF52 identified by match to protein family HMM PF01875 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2499 TREPR_2500 TREPR_2500 TREPR_2500 1699955 1701130 - hypothetical protein identified by glimmer%3B putative gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2500 TREPR_2501 TREPR_2501 TREPR_2501 1698973 1699953 + hypothetical protein identified by glimmer%3B putative gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2501 TREPR_2502 TREPR_2502 TREPR_2502 1697358 1698983 + hypothetical protein identified by glimmer%3B putative gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2502 TREPR_2503 TREPR_2503 TREPR_2503 1696620 1697354 + ABC transporter permease protein gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2503 TREPR_2504 TREPR_2504 TREPR_2504 1695592 1696623 + ABC-type multidrug transport system%2C ATPase component identified by match to protein family HMM PF00005 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2504 TREPR_2505 TREPR_2505 rnz rnz 1694647 1695573 + ribonuclease Z identified by match to protein family HMM PF00753%3B match to protein family HMM TIGR02651 gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2505 TREPR_2506 TREPR_2506 TREPR_2506 1693851 1694534 + YheO domain protein identified by match to protein family HMM PF08348 gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2506 TREPR_2507 TREPR_2507 TREPR_2507 1692348 1693622 - putative bacterial extracellular solute-binding protein identified by match to protein family HMM PF01547 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2507 TREPR_2508 TREPR_2508 TREPR_2508 1691332 1692267 - sugar ABC transporter permease identified by match to protein family HMM PF00528 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2508 TREPR_2509 TREPR_2509 TREPR_2509 1690473 1691330 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2509 TREPR_2510 TREPR_2510 TREPR_2510 1689354 1690469 - alanine racemase domain protein identified by match to protein family HMM PF01168 gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2510 TREPR_2511 TREPR_2511 TREPR_2511 1687745 1689349 - N-acyl-D-aspartate deacylase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07908%3B match to protein family HMM PF07969 gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2511 TREPR_2512 TREPR_2512 TREPR_2512 1687247 1687708 - endoribonuclease L-PSP identified by match to protein family HMM PF01042 gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2512 TREPR_2513 TREPR_2513 TREPR_2513 1684868 1687237 - glycosyl hydrolase%2C family 9 identified by match to protein family HMM PF00759 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2513 TREPR_2514 TREPR_2514 TREPR_2514 1683181 1684755 - conserved hypothetical protein gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2514 TREPR_2515 TREPR_2515 hflK hflK 1682023 1682994 - HflK protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01933 gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2515 TREPR_2516 TREPR_2516 hflC hflC 1681043 1682023 - HflC protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01932 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2516 TREPR_2517 TREPR_2517 TREPR_2517 1679964 1681013 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2517 TREPR_2518 TREPR_2518 TREPR_2518 1678667 1679566 + NAD(+) diphosphatase identified by match to protein family HMM PF00293%3B match to protein family HMM PF09297 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2518 TREPR_2519 TREPR_2519 TREPR_2519 1679563 1679913 - hypothetical protein identified by glimmer%3B putative gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2519 TREPR_2520 TREPR_2520 TREPR_2520 1678260 1678637 - conserved hypothetical protein gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2520 TREPR_2521 TREPR_2521 TREPR_2521 1677244 1678263 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2521 TREPR_2522 TREPR_2522 TREPR_2522 1675389 1677158 + putative outer membrane protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2522 TREPR_2523 TREPR_2523 pbpC pbpC 1672687 1675242 + penicillin-binding protein 1C identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM PF06832%3B match to protein family HMM TIGR02073 gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2523 TREPR_2524 TREPR_2524 TREPR_2524 1667129 1672678 + alpha-2-macroglobulin domain protein identified by match to protein family HMM PF01835%3B match to protein family HMM PF07703 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2524 TREPR_2525 TREPR_2525 TREPR_2525 1666757 1667065 + conserved hypothetical protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2525 TREPR_2526 TREPR_2526 TREPR_2526 1666457 1666747 + type I antifreeze protein identified by match to protein family HMM PF09723%3B match to protein family HMM TIGR02605 gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2526 TREPR_2527 TREPR_2527 TREPR_2527 1665492 1666439 + putative lipoprotein gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2527 TREPR_2528 TREPR_2528 ileS ileS 1662259 1665489 + isoleucine--tRNA ligase identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00392 gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2528 TREPR_2529 TREPR_2529 TREPR_2529 1661743 1662159 + conserved hypothetical protein gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2529 TREPR_2531 TREPR_2531 miaA miaA 1659852 1660850 + tRNA isopentenyltransferase identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2531 TREPR_2532 TREPR_2532 TREPR_2532 1659624 1659818 + conserved domain protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2532 TREPR_2533 TREPR_2533 glf glf 1658073 1659188 - UDP-galactopyranose mutase identified by match to protein family HMM PF03275%3B match to protein family HMM TIGR00031 gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2533 TREPR_2534 TREPR_2534 TREPR_2534 1657096 1658076 - glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2534 TREPR_2535 TREPR_2535 TREPR_2535 1656327 1657085 - glycosyltransferase identified by match to protein family HMM PF00535 gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2535 TREPR_2536 TREPR_2536 TREPR_2536 1654731 1656320 - hypothetical protein identified by glimmer%3B putative gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2536 TREPR_2537 TREPR_2537 TREPR_2537 1653948 1654724 - O-antigen export system permease protein RfbA identified by match to protein family HMM PF01061 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2537 TREPR_2538 TREPR_2538 TREPR_2538 1653177 1653947 - teichoic acids export ATP-binding protein TagH (Teichoicacid-transporting ATPase) identified by match to protein family HMM PF00005 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2538 TREPR_2539 TREPR_2539 TREPR_2539 1651396 1653180 - conserved hypothetical protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2539 TREPR_2540 TREPR_2540 TREPR_2540 1648485 1651403 - 2-oxoglutarate decarboxylase identified by match to protein family HMM PF02776 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2540 TREPR_2541 TREPR_2541 TREPR_2541 1646418 1648454 - citrate lyase ligase C- domain protein identified by match to protein family HMM PF01467%3B match to protein family HMM PF08218%3B match to protein family HMM TIGR00125 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2541 TREPR_2542 TREPR_2542 TREPR_2542 1644359 1646401 - citrate lyase ligase C- domain protein identified by match to protein family HMM PF01467%3B match to protein family HMM PF08218%3B match to protein family HMM TIGR00125 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2542 TREPR_2543 TREPR_2543 TREPR_2543 1642333 1644342 - citrate lyase ligase C- domain protein identified by match to protein family HMM PF01467%3B match to protein family HMM PF08218%3B match to protein family HMM TIGR00125 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2543 TREPR_2544 TREPR_2544 TREPR_2544 1640313 1642316 - citrate lyase ligase C- domain protein identified by match to protein family HMM PF01467%3B match to protein family HMM PF08218%3B match to protein family HMM TIGR00125 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2544 TREPR_2545 TREPR_2545 TREPR_2545 1638936 1640303 - sugar transferase identified by match to protein family HMM PF02397%3B match to protein family HMM TIGR03025 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2545 TREPR_2546 TREPR_2546 TREPR_2546 1638240 1638923 - macrolide export ATP-binding/permease protein MacB identified by match to protein family HMM PF00005 gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2546 TREPR_2547 TREPR_2547 TREPR_2547 1636795 1638243 - efflux ABC transporter%2C permease protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF02687 pseudogene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2547 TREPR_2548 TREPR_2548 TREPR_2548 1635488 1636792 - efflux ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2548 TREPR_2549 TREPR_2549 TREPR_2549 1634715 1635488 - conserved hypothetical protein gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2549 TREPR_2550 TREPR_2550 TREPR_2550 1633393 1634715 - hypothetical protein identified by glimmer%3B putative gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2550 TREPR_2551 TREPR_2551 TREPR_2551 1632530 1633249 + aliphatic sulfonates import ATP-binding protein SsuB 1 identified by match to protein family HMM PF00005 gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2551 TREPR_2552 TREPR_2552 TREPR_2552 1631781 1632533 + putative ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2552 TREPR_2553 TREPR_2553 TREPR_2553 1630769 1631791 + putative sulfonate/nitrate transport system substrate-binding protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2553 TREPR_2554 TREPR_2554 fliJ fliJ 1630278 1630736 + flagellar export protein FliJ identified by match to protein family HMM TIGR02473 gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2554 TREPR_2555 TREPR_2555 fliI fliI 1628932 1630281 + flagellar protein export ATPase FliI identified by match to protein family HMM PF00006%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR03496 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2555 TREPR_2556 TREPR_2556 TREPR_2556 1627886 1628923 + flagellar assembly protein identified by match to protein family HMM PF02108 gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2556 TREPR_2557 TREPR_2557 fliG fliG 1626831 1627889 + flagellar motor switch protein FliG identified by match to protein family HMM PF01706%3B match to protein family HMM TIGR00207 gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2557 TREPR_2558 TREPR_2558 fliF fliF 1625121 1626827 + flagellar M-ring protein FliF identified by match to protein family HMM PF01514%3B match to protein family HMM PF08345%3B match to protein family HMM TIGR00206 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2558 TREPR_2559 TREPR_2559 TREPR_2559 1624624 1625022 + flagellar hook-basal body complex protein FliE gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2559 TREPR_2560 TREPR_2560 flgC flgC 1624146 1624604 + flagellar basal-body rod protein FlgC identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2560 TREPR_2561 TREPR_2561 flgB flgB 1623718 1624134 + flagellar basal-body rod protein FlgB identified by match to protein family HMM TIGR01396 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2561 TREPR_2562 TREPR_2562 hslU hslU 1622085 1623665 + heat shock protein HslVU%2C ATPase subunit HslU identified by match to protein family HMM PF07724%3B match to protein family HMM TIGR00390 gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2562 TREPR_2563 TREPR_2563 TREPR_2563 1621513 1622085 + ATP-dependent protease HslV identified by match to protein family HMM PF00227 gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2563 TREPR_2564 TREPR_2564 TREPR_2564 1620548 1621516 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2564 TREPR_2565 TREPR_2565 topA topA 1618390 1620558 + DNA topoisomerase identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2565 TREPR_2566 TREPR_2566 TREPR_2566 1617403 1618383 + smf protein identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2566 TREPR_2567 TREPR_2567 TREPR_2567 1616664 1617410 + tetratricopeptide repeat protein gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2567 TREPR_2568 TREPR_2568 TREPR_2568 1615757 1616656 + integrase/recombinase XerD identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2568 TREPR_2569 TREPR_2569 ftsZ ftsZ 1614530 1615741 + cell division protein FtsZ identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2569 TREPR_2570 TREPR_2570 ftsA ftsA 1613161 1614429 + cell division protein FtsA identified by match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2570 TREPR_2571 TREPR_2571 TREPR_2571 1612347 1613168 + putative cell division protein FtsQ identified by match to protein family HMM PF08478 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2571 TREPR_2572 TREPR_2572 TREPR_2572 1611221 1612354 + stage V sporulation protein E identified by match to protein family HMM PF01098 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2572 TREPR_2573 TREPR_2573 mraY mraY 1610142 1611221 + phospho-N-acetylmuramoyl-pentapeptide-transferase identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445 gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2573 TREPR_2574 TREPR_2574 TREPR_2574 1609703 1609996 + putative cell division protein FtsL gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2574 TREPR_2575 TREPR_2575 mraW mraW 1608756 1609706 + S-adenosyl-methyltransferase MraW identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2575 TREPR_2576 TREPR_2576 TREPR_2576 1608284 1608748 + protein MraZ identified by match to protein family HMM PF02381 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2576 TREPR_2577 TREPR_2577 TREPR_2577 1608181 1608327 - hypothetical protein identified by glimmer%3B putative gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2577 TREPR_2579 TREPR_2579 rpmE rpmE 1607189 1607392 + ribosomal protein L31 identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2579 TREPR_2580 TREPR_2580 TREPR_2580 1605225 1607132 + transcription termination factor rho (ATP-dependenthelicase rho) identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00767 gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2580 TREPR_2581 TREPR_2581 TREPR_2581 1601475 1604993 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2581 TREPR_2582 TREPR_2582 uvrA uvrA 1598551 1601478 + excinuclease ABC%2C A subunit identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2582 TREPR_2583 TREPR_2583 TREPR_2583 1598202 1598336 + hypothetical protein identified by glimmer%3B putative gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2583 TREPR_2584 TREPR_2584 TREPR_2584 1597814 1598227 - conserved hypothetical protein gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2584 TREPR_2589 TREPR_2589 TREPR_2589 1594624 1596099 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2589 TREPR_2590 TREPR_2590 TREPR_2590 1593849 1594610 - conserved hypothetical protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2590 TREPR_2591 TREPR_2591 TREPR_2591 1593161 1593586 + coiled-coil domain protein gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2591 TREPR_2592 TREPR_2592 TREPR_2592 1592932 1593168 + hypothetical protein identified by glimmer%3B putative gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2592 TREPR_2593 TREPR_2593 TREPR_2593 1592674 1592817 + hypothetical protein identified by glimmer%3B putative gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2593 TREPR_2594 TREPR_2594 TREPR_2594 1590344 1592476 + hypothetical protein identified by glimmer%3B putative gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2594 TREPR_2598 TREPR_2598 tig tig 1587188 1588549 - trigger factor identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2598 TREPR_2599 TREPR_2599 clpP_1 clpP_1 1586561 1587175 - Clp protease identified by match to protein family HMM PF00574 gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2599 TREPR_2600 TREPR_2600 clpX clpX 1585324 1586577 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX identified by match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382 gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2600 TREPR_2601 TREPR_2601 lon_2 lon_2 1582827 1585316 - endopeptidase La identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2601 TREPR_2602 TREPR_2602 TREPR_2602 1581690 1582823 + putative mannosyltransferase identified by match to protein family HMM PF00534 gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2602 TREPR_2603 TREPR_2603 nrdR nrdR 1581042 1581509 - transcriptional regulator NrdR identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2603 TREPR_2604 TREPR_2604 TREPR_2604 1580126 1580998 - DNA polymerase domain protein identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2604 TREPR_2605 TREPR_2605 priA priA 1578138 1580123 - primosomal protein N' identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2605 TREPR_2606 TREPR_2606 TREPR_2606 1577529 1577948 - transcriptional regulator%2C BadM/Rrf2 family identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2606 TREPR_2607 TREPR_2607 TREPR_2607 1575963 1577465 - conserved hypothetical protein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2607 TREPR_2608 TREPR_2608 TREPR_2608 1573433 1575946 + probable ATP-dependent helicase YoaA gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2608 TREPR_2610 TREPR_2610 TREPR_2610 1571356 1573320 - hypothetical protein identified by glimmer%3B putative gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2610 TREPR_2611 TREPR_2611 TREPR_2611 1570626 1571309 + conserved hypothetical protein gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2611 TREPR_2612 TREPR_2612 TREPR_2612 1570110 1570604 + conserved hypothetical protein gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2612 TREPR_2613 TREPR_2613 TREPR_2613 1569660 1570088 + conserved hypothetical protein identified by match to protein family HMM PF01381%3B match to protein family HMM PF03681 gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2613 TREPR_2614 TREPR_2614 TREPR_2614 1569484 1569663 + conserved domain protein identified by match to protein family HMM PF07927 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2614 TREPR_2615 TREPR_2615 TREPR_2615 1569215 1569355 - hypothetical protein identified by glimmer%3B putative gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2615 TREPR_2616 TREPR_2616 TREPR_2616 1568928 1569215 - transcriptional Regulator%2C XRE family gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2616 TREPR_2617 TREPR_2617 TREPR_2617 1566265 1568820 + sperm-activating peptides family%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2617 TREPR_2618 TREPR_2618 TREPR_2618 1565153 1566250 + repeat protein identified by match to protein family HMM PF09479%3B match to protein family HMM TIGR02543 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2618 TREPR_2619 TREPR_2619 TREPR_2619 1564611 1564874 + addiction module toxin%2C Txe/YoeB family identified by match to protein family HMM PF06769%3B match to protein family HMM TIGR02116 gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2619 TREPR_2620 TREPR_2620 TREPR_2620 1564379 1564618 + hypothetical protein identified by glimmer%3B putative gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2620 TREPR_2621 TREPR_2621 TREPR_2621 1562948 1564309 + conserved hypothetical protein identified by match to protein family HMM PF05167 gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2621 TREPR_2622 TREPR_2622 TREPR_2622 1562546 1562815 + ACT domain protein identified by match to protein family HMM PF01842 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2622 TREPR_2623 TREPR_2623 TREPR_2623 1560488 1562473 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720%3B match to protein family HMM PF07721 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2623 TREPR_2624 TREPR_2624 TREPR_2624 1559763 1560470 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2624 TREPR_2625 TREPR_2625 TREPR_2625 1558972 1559640 - metallophosphoesterase identified by match to protein family HMM PF00149 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2625 TREPR_2626 TREPR_2626 TREPR_2626 1558038 1558985 - transcriptional regulator gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2626 TREPR_2627 TREPR_2627 TREPR_2627 1557168 1558025 - pyridoxal kinase identified by match to protein family HMM TIGR00687 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2627 TREPR_2628 TREPR_2628 TREPR_2628 1556399 1557154 + conserved hypothetical protein gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2628 TREPR_2629 TREPR_2629 TREPR_2629 1555528 1556385 + conserved hypothetical protein gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2629 TREPR_2630 TREPR_2630 mutS mutS 1552704 1555424 + DNA mismatch repair protein MutS identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070 gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2630 TREPR_2631 TREPR_2631 TREPR_2631 1552087 1552617 + cationic outer membrane protein identified by match to protein family HMM PF03938 gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2631 TREPR_2632 TREPR_2632 yaeT yaeT 1549561 1552071 + outer membrane protein assembly complex%2C YaeT protein identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244%3B match to protein family HMM PF08479%3B match to protein family HMM TIGR03303 gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2632 TREPR_2633 TREPR_2633 TREPR_2633 1544960 1549561 + conserved hypothetical protein identified by match to protein family HMM PF04357 gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2633 TREPR_2634 TREPR_2634 tmk tmk 1544144 1544809 - dTMP kinase identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2634 TREPR_2635 TREPR_2635 TREPR_2635 1543543 1544169 - conserved hypothetical protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2635 TREPR_2636 TREPR_2636 TREPR_2636 1543306 1543503 + conserved hypothetical protein gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2636 TREPR_2637 TREPR_2637 TREPR_2637 1542884 1543300 + hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2637 TREPR_2638 TREPR_2638 TREPR_2638 1542721 1542864 + hypothetical protein identified by glimmer%3B putative gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2638 TREPR_2639 TREPR_2639 hrpB hrpB 1539719 1542496 + ATP-dependent helicase HrpB identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM PF08482%3B match to protein family HMM TIGR01970 gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2639 TREPR_2640 TREPR_2640 ligA ligA 1537752 1539722 + DNA ligase (NAD(+)) identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2640 TREPR_2641 TREPR_2641 trmB trmB 1537060 1537734 + tRNA (guanine-N(7)-)-methyltransferase identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091 gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2641 TREPR_2642 TREPR_2642 TREPR_2642 1536378 1537058 + putative lipoprotein gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2642 TREPR_2643 TREPR_2643 TREPR_2643 1533525 1534217 + hypothetical protein identified by glimmer%3B putative gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2643 TREPR_2644 TREPR_2644 TREPR_2644 1534209 1536257 - putative membrane protein gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2644 TREPR_2645 TREPR_2645 TREPR_2645 1533228 1533515 + conserved hypothetical protein identified by match to protein family HMM PF04456 gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2645 TREPR_2646 TREPR_2646 TREPR_2646 1532188 1533213 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720 gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2646 TREPR_2647 TREPR_2647 TREPR_2647 1531121 1532191 + putative uracil phosphoribosyltransferase (umppyrophosphorylase) (uprtase) gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2647 TREPR_2648 TREPR_2648 TREPR_2648 1530518 1531096 + hypothetical protein identified by glimmer%3B putative gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2648 TREPR_2649 TREPR_2649 TREPR_2649 1529288 1530457 + hypothetical protein identified by glimmer%3B putative gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2649 TREPR_2650 TREPR_2650 TREPR_2650 1528564 1529124 + hypothetical protein identified by glimmer%3B putative gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2650 TREPR_2651 TREPR_2651 ispG ispG 1527168 1528247 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2651 TREPR_2652 TREPR_2652 TREPR_2652 1526649 1527089 + ATP synthase subunit K identified by match to protein family HMM PF00137 gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2652 TREPR_2653 TREPR_2653 TREPR_2653 1524427 1526364 + V-type ATP synthase subunit I 1 (V-type ATPase subunit I1) identified by match to protein family HMM PF01496 gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2653 TREPR_2654 TREPR_2654 TREPR_2654 1523799 1524401 + V-type ATPase%2C D subunit identified by match to protein family HMM PF01813%3B match to protein family HMM TIGR00309 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2654 TREPR_2655 TREPR_2655 TREPR_2655 1522489 1523787 + V-type sodium ATP synthase%2C B subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF02874 gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2655 TREPR_2656 TREPR_2656 TREPR_2656 1520659 1522419 + V-type sodium ATP synthase%2C A subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF02874 gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2656 TREPR_2657 TREPR_2657 TREPR_2657 1520060 1520662 + conserved hypothetical protein gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2657 TREPR_2658 TREPR_2658 TREPR_2658 1519442 1520056 + V-type ATP synthase subunit E (V-type ATPase subunit E) gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2658 TREPR_2660 TREPR_2660 TREPR_2660 1518268 1519320 + aldose 1-epimerase (Mutarotase) identified by match to protein family HMM PF01263 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2660 TREPR_2661 TREPR_2661 TREPR_2661 1516945 1518144 - isocitrate dehydrogenase%2C NADP-dependent identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00127 gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2661 TREPR_2662 TREPR_2662 TREPR_2662 1514680 1516935 + hypothetical protein identified by glimmer%3B putative gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2662 TREPR_2663 TREPR_2663 TREPR_2663 1513303 1514667 + putative exopolygalacturonate lyase identified by match to protein family HMM PF07523 gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2663 TREPR_2664 TREPR_2664 TREPR_2664 1512784 1513290 + conserved hypothetical protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2664 TREPR_2666 TREPR_2666 TREPR_2666 1510482 1512224 - MDR-type ABC transporter identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2666 TREPR_2667 TREPR_2667 TREPR_2667 1508648 1510480 - ABC-type multidrug/protein/lipid transport system%2C ATPase component identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2667 TREPR_2668 TREPR_2668 TREPR_2668 1508169 1508645 + thioesterase family protein gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2668 TREPR_2669 TREPR_2669 maf maf 1507492 1508079 - septum formation protein Maf identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2669 TREPR_2670 TREPR_2670 rpsB rpsB 1506408 1507328 - ribosomal protein S2 identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2670 TREPR_2671 TREPR_2671 tsf tsf 1505471 1506319 - translation elongation factor Ts identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2671 TREPR_2672 TREPR_2672 frr frr 1504899 1505453 - ribosome recycling factor identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2672 TREPR_2673 TREPR_2673 uppS uppS 1504101 1504844 - di-trans%2Cpoly-cis-decaprenylcistransferase identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055 gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2673 TREPR_2674 TREPR_2674 cdsA_2 cdsA_2 1503254 1504108 - phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2674 TREPR_2675 TREPR_2675 dxr dxr 1502091 1503239 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase identified by match to protein family HMM PF02670%3B match to protein family HMM PF08436%3B match to protein family HMM TIGR00243 gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2675 TREPR_2677 TREPR_2677 rseP rseP 1500735 1502090 - RIP metalloprotease RseP identified by match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2677 TREPR_2678 TREPR_2678 TREPR_2678 1498342 1498638 + conserved hypothetical protein gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2678 TREPR_2679 TREPR_2679 TREPR_2679 1498635 1500605 - hypothetical protein identified by glimmer%3B putative gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2679 TREPR_2680 TREPR_2680 dnaB dnaB 1496687 1498066 + replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2680 TREPR_2681 TREPR_2681 rplI rplI 1496093 1496686 + ribosomal protein L9 identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2681 TREPR_2682 TREPR_2682 TREPR_2682 1494970 1495947 + putative membrane protein gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2682 TREPR_2683 TREPR_2683 TREPR_2683 1494552 1494872 + 30S ribosomal protein S18 identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165 gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2683 TREPR_2684 TREPR_2684 TREPR_2684 1494061 1494528 + plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) identified by match to protein family HMM PF00436%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00621 gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2684 TREPR_2685 TREPR_2685 rpsF rpsF 1493774 1494055 + ribosomal protein S6 identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2685 TREPR_2686 TREPR_2686 TREPR_2686 1493031 1493678 + thiamine diphosphokinase identified by match to protein family HMM PF04263%3B match to protein family HMM TIGR01378 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2686 TREPR_2687 TREPR_2687 TREPR_2687 1491566 1492927 - tRNA adenylyltransferase/tRNA cytidylyltransferase identified by match to protein family HMM PF01743%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2687 TREPR_2688 TREPR_2688 TREPR_2688 1491041 1491556 + putative lipoprotein gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2688 TREPR_2689 TREPR_2689 rnc rnc 1490110 1490961 + ribonuclease III identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2689 TREPR_2690 TREPR_2690 acpP acpP 1489908 1490144 + acyl carrier protein identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2690 TREPR_2691 TREPR_2691 coaD coaD 1488410 1488886 + pantetheine-phosphate adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2691 TREPR_2692 TREPR_2692 TREPR_2692 1487773 1488357 - putative lipoprotein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2692 TREPR_2693 TREPR_2693 TREPR_2693 1486935 1487654 - conserved hypothetical protein gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2693 TREPR_2694 TREPR_2694 TREPR_2694 1485669 1486901 - hypothetical protein identified by glimmer%3B putative gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2694 TREPR_2695 TREPR_2695 TREPR_2695 1484858 1485652 - hypothetical protein identified by glimmer%3B putative gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2695 TREPR_2696 TREPR_2696 hisS hisS 1483489 1484811 - histidine--tRNA ligase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2696 TREPR_2697 TREPR_2697 TREPR_2697 1482240 1483457 + aspartate aminotransferase identified by match to protein family HMM PF00155 gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2697 TREPR_2698 TREPR_2698 TREPR_2698 1481188 1482087 + putative membrane protein identified by match to protein family HMM PF03773 gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2698 TREPR_2699 TREPR_2699 TREPR_2699 1480173 1481195 + conserved hypothetical protein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2699 TREPR_2700 TREPR_2700 TREPR_2700 1479006 1480064 + conserved hypothetical protein gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2700 TREPR_2701 TREPR_2701 TREPR_2701 1477888 1478955 + ATPase%2C AAA family identified by match to protein family HMM PF07728 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2701 TREPR_2702 TREPR_2702 TREPR_2702 1477250 1477897 + hypothetical protein identified by glimmer%3B putative gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2702 TREPR_2703 TREPR_2703 TREPR_2703 1477034 1477240 - conserved hypothetical protein gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2703 TREPR_2704 TREPR_2704 TREPR_2704 1476385 1477056 - transcriptional regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2704 TREPR_2705 TREPR_2705 TREPR_2705 1475297 1476388 - Two component sensor kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2705 TREPR_2706 TREPR_2706 TREPR_2706 1473850 1475205 - Na+-driven multidrug efflux pump identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2706 TREPR_2707 TREPR_2707 TREPR_2707 1473408 1473860 - transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2707 TREPR_2708 TREPR_2708 TREPR_2708 1472966 1473400 + RRF2 family protein identified by match to protein family HMM PF02082 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2708 TREPR_2709 TREPR_2709 TREPR_2709 1472511 1472912 + pyridoxamine 5'-phosphate oxidase family protein identified by match to protein family HMM PF01243 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2709 TREPR_2710 TREPR_2710 TREPR_2710 1471062 1472174 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2710 TREPR_2711 TREPR_2711 TREPR_2711 1467955 1471065 - putative acriflavin resistance protein identified by match to protein family HMM PF00873 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2711 TREPR_2712 TREPR_2712 TREPR_2712 1466649 1467920 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2712 TREPR_2713 TREPR_2713 TREPR_2713 1466276 1466614 - putative lipoprotein gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2713 TREPR_2714 TREPR_2714 TREPR_2714 1465851 1466276 - hypothetical protein identified by glimmer%3B putative gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2714 TREPR_2715 TREPR_2715 TREPR_2715 1465404 1465637 - hypothetical protein identified by glimmer%3B putative gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2715 TREPR_2716 TREPR_2716 TREPR_2716 1464884 1465348 - hypothetical protein identified by glimmer%3B putative gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2716 TREPR_2717 TREPR_2717 TREPR_2717 1464321 1464761 + putative lipoprotein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2717 TREPR_2718 TREPR_2718 TREPR_2718 1463619 1463867 + hypothetical protein identified by glimmer%3B putative gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2718 TREPR_2719 TREPR_2719 TREPR_2719 1463171 1463614 + conserved hypothetical protein gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2719 TREPR_2720 TREPR_2720 TREPR_2720 1462944 1463141 + excisionase/Xis%2C DNA-binding protein gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2720 TREPR_2721 TREPR_2721 TREPR_2721 1462503 1462898 + putative transposase gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2721 TREPR_2723 TREPR_2723 TREPR_2723 1461166 1461768 + IscU protein identified by match to protein family HMM PF01592%3B match to protein family HMM PF04324 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2723 TREPR_2724 TREPR_2724 iscS iscS 1459938 1461128 + cysteine desulfurase identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2724 TREPR_2725 TREPR_2725 TREPR_2725 1457800 1459713 - phosphohexose mutase family protein identified by match to protein family HMM PF02878 gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2725 TREPR_2726 TREPR_2726 TREPR_2726 1457235 1457798 - conserved hypothetical protein gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2726 TREPR_2727 TREPR_2727 TREPR_2727 1456332 1457141 - lipoprotein%2C nlpa family identified by match to protein family HMM PF03180 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2727 TREPR_2728 TREPR_2728 TREPR_2728 1455552 1456283 - redox-sensing transcriptional repressor Rex identified by match to protein family HMM PF02629%3B match to protein family HMM PF06971 gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2728 TREPR_2729 TREPR_2729 raiA raiA 1454173 1454514 + ribosomal subunit interface protein identified by match to protein family HMM TIGR00741 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2729 TREPR_2730 TREPR_2730 TREPR_2730 1454501 1455571 - conserved hypothetical protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2730 TREPR_2731 TREPR_2731 rpoN rpoN 1452788 1454146 + RNA polymerase sigma-54 factor identified by match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395 gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2731 TREPR_2732 TREPR_2732 TREPR_2732 1451251 1452597 - conserved hypothetical protein gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2732 TREPR_2733 TREPR_2733 TREPR_2733 1449014 1451110 - putative methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743 gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2733 TREPR_2734 TREPR_2734 TREPR_2734 1447292 1448992 - putatIve type i restriction enzyme hindviip m protein (m.hindviip) identified by match to protein family HMM PF02384 gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2734 TREPR_2735 TREPR_2735 TREPR_2735 1446867 1447295 - divergent AAA ATPase gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2735 TREPR_2736 TREPR_2736 TREPR_2736 1445653 1446870 - restriction modification system DNA specificity domain protein identified by match to protein family HMM PF01420 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2736 TREPR_2737 TREPR_2737 TREPR_2737 1445162 1445638 + PIN domain protein gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2737 TREPR_2738 TREPR_2738 TREPR_2738 1444014 1445165 + conserved hypothetical protein identified by match to protein family HMM PF06114 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2738 TREPR_2739 TREPR_2739 TREPR_2739 1440645 1443866 - putatIve type i restriction enzyme hindviip r protein identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2739 TREPR_2740 TREPR_2740 TREPR_2740 1439028 1440257 + ATPase gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2740 TREPR_2742 TREPR_2742 TREPR_2742 1437960 1438553 + membrane protein identified by match to protein family HMM PF02659 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2742 TREPR_2743 TREPR_2743 TREPR_2743 1437275 1437919 + hypothetical protein identified by glimmer%3B putative gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2743 TREPR_2744 TREPR_2744 TREPR_2744 1435667 1437127 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2744 TREPR_2745 TREPR_2745 TREPR_2745 1435110 1435568 + HD family hydrolase%2C diverged identified by match to protein family HMM PF01966 gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2745 TREPR_2746 TREPR_2746 TREPR_2746 1434538 1435113 + conserved hypothetical protein gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2746 TREPR_2747 TREPR_2747 TREPR_2747 1430112 1434536 + CoA enzyme activase identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241 gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2747 TREPR_2748 TREPR_2748 TREPR_2748 1429972 1430109 + hypothetical protein identified by glimmer%3B putative gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2748 TREPR_2749 TREPR_2749 ndk ndk 1428795 1429973 - nucleoside diphosphate kinase family identified by match to protein family HMM PF00334 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2749 TREPR_2750 TREPR_2750 lysS lysS 1427134 1428786 - lysine--tRNA ligase identified by match to protein family HMM PF01406%3B match to protein family HMM PF01921%3B match to protein family HMM TIGR00467 gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2750 TREPR_2751 TREPR_2751 TREPR_2751 1426270 1427121 - methyl parathion hydrolase identified by match to protein family HMM PF00753 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2751 TREPR_2752 TREPR_2752 TREPR_2752 1426040 1426207 + hypothetical protein identified by glimmer%3B putative gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2752 TREPR_2753 TREPR_2753 TREPR_2753 1425526 1425864 - transcriptional regulator identified by match to protein family HMM PF01381 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2753 TREPR_2754 TREPR_2754 TREPR_2754 1424490 1425485 + chromosome-partitioning protein ParB identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2754 TREPR_2755 TREPR_2755 TREPR_2755 1423742 1424500 + sporulation initiation inhibitor protein Soj identified by match to protein family HMM PF01656 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2755 TREPR_2756 TREPR_2756 TREPR_2756 1422777 1423619 - hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2756 TREPR_2757 TREPR_2757 TREPR_2757 1421751 1422710 - lipoprotein%2C RlpA family identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR00413 gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2757 TREPR_2759 TREPR_2759 groS groS 1421315 1421581 - chaperonin GroS identified by match to protein family HMM PF00166 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2759 TREPR_2760 TREPR_2760 TREPR_2760 1419743 1421194 + hypothetical protein identified by glimmer%3B putative gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2760 TREPR_2761 TREPR_2761 TREPR_2761 1417743 1419650 + hypothetical protein identified by glimmer%3B putative gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2761 TREPR_2762 TREPR_2762 TREPR_2762 1416982 1417533 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2762 TREPR_2763 TREPR_2763 TREPR_2763 1416131 1416967 - metallophosphoesterase gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2763 TREPR_2764 TREPR_2764 TREPR_2764 1415733 1416134 - hypothetical protein identified by glimmer%3B putative gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2764 TREPR_2765 TREPR_2765 TREPR_2765 1415124 1415693 + protein ThiJ identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01383 gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2765 TREPR_2766 TREPR_2766 TREPR_2766 1413078 1414445 - putative response regulator identified by match to protein family HMM PF00072 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2766 TREPR_2767 TREPR_2767 TREPR_2767 1412191 1413069 - histidinol phosphate phosphatase%2C HisJ identified by match to protein family HMM PF02811%3B match to protein family HMM TIGR01856 gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2767 TREPR_2768 TREPR_2768 TREPR_2768 1411834 1412166 + C4 zinc finger domain protein%2C DksA/TraR family identified by match to protein family HMM PF01258 gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2768 TREPR_2769 TREPR_2769 TREPR_2769 1410632 1411342 + peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C 22 kDa subunit identified by match to protein family HMM PF00254%3B match to protein family HMM PF01346 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2769 TREPR_2770 TREPR_2770 TREPR_2770 1409092 1410474 - sugar transporter identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00792 gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2770 TREPR_2771 TREPR_2771 TREPR_2771 1408828 1409061 - hypothetical protein identified by glimmer%3B putative gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2771 TREPR_2772 TREPR_2772 TREPR_2772 1408431 1408856 - PilT protein domain protein identified by match to protein family HMM PF01850 gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2772 TREPR_2773 TREPR_2773 TREPR_2773 1407621 1408364 + flavin reductase identified by match to protein family HMM PF03358 gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2773 TREPR_2774 TREPR_2774 TREPR_2774 1407341 1407556 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2774 TREPR_2775 TREPR_2775 malP malP 1404662 1407202 + maltodextrin phosphorylase identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02094 gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2775 TREPR_2776 TREPR_2776 TREPR_2776 1403451 1404542 - conserved hypothetical protein identified by match to protein family HMM PF04015 gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2776 TREPR_2777 TREPR_2777 TREPR_2777 1403063 1403377 + conserved hypothetical protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2777 TREPR_2778 TREPR_2778 TREPR_2778 1402807 1403109 + conserved hypothetical protein identified by match to protein family HMM PF04365 gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2778 TREPR_2779 TREPR_2779 TREPR_2779 1401778 1402638 - 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein identified by match to protein family HMM PF00037 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2779 TREPR_2780 TREPR_2780 TREPR_2780 1399267 1401744 + tetratricopeptide repeat domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2780 TREPR_2781 TREPR_2781 TREPR_2781 1397340 1399262 + tetratricopeptide repeat domain protein%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by match to protein family HMM PF07719 pseudogene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2781 TREPR_2782 TREPR_2782 TREPR_2782 1396874 1397287 + hypothetical protein identified by glimmer%3B putative gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2782 TREPR_2784 TREPR_2784 TREPR_2784 1393220 1396744 + probable extracellular nuclease identified by match to protein family HMM TIGR01376 gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2784 TREPR_2785 TREPR_2785 TREPR_2785 1389914 1393204 + fibronectin type III domain protein identified by match to protein family HMM PF00041 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2785 TREPR_2786 TREPR_2786 TREPR_2786 1384698 1389701 + putative extracellular nuclease identified by match to protein family HMM PF02415%3B match to protein family HMM TIGR01376 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2786 TREPR_2787 TREPR_2787 TREPR_2787 1381369 1384683 + fibronectin type III domain protein identified by match to protein family HMM PF00041 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2787 TREPR_2788 TREPR_2788 TREPR_2788 1380686 1380934 + hypothetical protein identified by glimmer%3B putative gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2788 TREPR_2789 TREPR_2789 TREPR_2789 1380425 1380676 + conserved hypothetical protein gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2789 TREPR_2790 TREPR_2790 TREPR_2790 1380165 1380290 - hypothetical protein identified by glimmer%3B putative gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2790 TREPR_2791 TREPR_2791 TREPR_2791 1377597 1380140 + bifunctional aspartokinase/homoserine dehydrogenase I identified by match to protein family HMM PF00696%3B match to protein family HMM PF00742%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447%3B match to protein family HMM TIGR00657 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2791 TREPR_2792 TREPR_2792 TREPR_2792 1376326 1377411 - putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase identified by match to protein family HMM PF00953 gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2792 TREPR_2793 TREPR_2793 TREPR_2793 1376031 1376321 + regulatory protein%2C ArsR identified by match to protein family HMM PF01022 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2793 TREPR_2794 TREPR_2794 TREPR_2794 1374710 1375864 - cysteine desulfurase identified by match to protein family HMM PF00266 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2794 TREPR_2795 TREPR_2795 thiI thiI 1373529 1374710 - thiamine biosynthesis/tRNA modification protein ThiI identified by match to protein family HMM PF02568%3B match to protein family HMM PF02926%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00342 gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2795 TREPR_2796 TREPR_2796 TREPR_2796 1373155 1373445 + CopG domain protein DNA-binding domain protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2796 TREPR_2797 TREPR_2797 TREPR_2797 1372883 1373158 + conserved hypothetical protein gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2797 TREPR_2798 TREPR_2798 TREPR_2798 1370716 1372809 + tetratricopeptide repeat domain protein%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF01436 pseudogene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2798 TREPR_2799 TREPR_2799 TREPR_2799 1370021 1370719 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2799 TREPR_2800 TREPR_2800 TREPR_2800 1369235 1370017 + 5'-nucleotidase SurE (Nucleoside 5'-monophosphatephosphohydrolase) identified by match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2800 TREPR_2801 TREPR_2801 TREPR_2801 1368072 1369238 + putative galactokinase (Galactose kinase) identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544 gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2801 TREPR_2802 TREPR_2802 TREPR_2802 1367736 1367996 - hypothetical protein identified by glimmer%3B putative gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2802 TREPR_2803 TREPR_2803 TREPR_2803 1367030 1367662 - hypothetical protein identified by glimmer%3B putative gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2803 TREPR_2805 TREPR_2805 TREPR_2805 1366237 1366476 + hypothetical protein identified by glimmer%3B putative gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2805 TREPR_2806 TREPR_2806 rnhB rnhB 1365528 1366139 + ribonuclease HII identified by match to protein family HMM PF01351 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2806 TREPR_2807 TREPR_2807 TREPR_2807 1364904 1365518 + phosphoribosyl transferase domain protein gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2807 TREPR_2808 TREPR_2808 TREPR_2808 1363989 1364831 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2808 TREPR_2809 TREPR_2809 TREPR_2809 1363303 1363995 + hypothetical protein identified by glimmer%3B putative gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2809 TREPR_2810 TREPR_2810 TREPR_2810 1362741 1363310 + rhomboid family protein identified by match to protein family HMM PF01694 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2810 TREPR_2811 TREPR_2811 xth xth 1361949 1362731 + exodeoxyribonuclease III identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2811 TREPR_2812 TREPR_2812 clpS clpS 1361491 1361802 - ATP-dependent Clp protease adaptor protein ClpS identified by match to protein family HMM PF02617 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2812 TREPR_2813 TREPR_2813 clpA clpA 1358874 1361420 - ATP-dependent Clp protease ATP-binding subunit ClpA identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02639 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2813 TREPR_2814 TREPR_2814 aat aat 1358048 1358809 - leucyltransferase identified by match to protein family HMM PF03588%3B match to protein family HMM TIGR00667 gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2814 TREPR_2815 TREPR_2815 TREPR_2815 1357803 1357988 - conserved hypothetical protein gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2815 TREPR_2816 TREPR_2816 TREPR_2816 1356304 1357761 + probable M18 family aminopeptidase 1 identified by match to protein family HMM PF02127 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2816 TREPR_2817 TREPR_2817 gltX gltX 1354742 1356244 - glutamate--tRNA ligase identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2817 TREPR_2818 TREPR_2818 TREPR_2818 1353823 1354731 + hypothetical protein identified by glimmer%3B putative gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2818 TREPR_2819 TREPR_2819 TREPR_2819 1352990 1353805 + NAD-dependent deacetylase identified by match to protein family HMM PF02146 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2819 TREPR_2820 TREPR_2820 TREPR_2820 1352063 1352980 + ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2820 TREPR_2821 TREPR_2821 TREPR_2821 1351969 1352085 + hypothetical protein identified by glimmer%3B putative gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2821 TREPR_2822 TREPR_2822 TREPR_2822 1351508 1351918 + putative positive regulator of sigma E%2C RseC/MucC gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2822 TREPR_2823 TREPR_2823 TREPR_2823 1350037 1351401 + MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2823 TREPR_2824 TREPR_2824 TREPR_2824 1348882 1350000 + putative lipoprotein gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2824 TREPR_2825 TREPR_2825 TREPR_2825 1348189 1348743 + transcriptional regulator identified by match to protein family HMM PF00440 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2825 TREPR_2826 TREPR_2826 TREPR_2826 1345369 1348011 - putative membrane protein gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2826 TREPR_2827 TREPR_2827 TREPR_2827 1344567 1345361 - conserved hypothetical protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2827 TREPR_2828 TREPR_2828 TREPR_2828 1343242 1344570 - conserved hypothetical protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2828 TREPR_2830 TREPR_2830 TREPR_2830 1342437 1342733 - PIN domain protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2830 TREPR_2831 TREPR_2831 TREPR_2831 1341138 1341689 + hypothetical protein identified by glimmer%3B putative gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2831 TREPR_2832 TREPR_2832 TREPR_2832 1340776 1341087 + hypothetical protein identified by glimmer%3B putative gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2832 TREPR_2834 TREPR_2834 TREPR_2834 1340248 1340436 - hypothetical protein identified by glimmer%3B putative gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2834 TREPR_2835 TREPR_2835 TREPR_2835 1339192 1340091 + conserved hypothetical protein gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2835 TREPR_2836 TREPR_2836 TREPR_2836 1338258 1339172 + cell surface protein gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2836 TREPR_2838 TREPR_2838 TREPR_2838 1337622 1338059 - MutT/NUDIX family protein identified by match to protein family HMM PF00293 gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2838 TREPR_2839 TREPR_2839 TREPR_2839 1335889 1337439 - UshA protein identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2839 TREPR_2842 TREPR_2842 TREPR_2842 1334785 1335558 + conserved hypothetical protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2842 TREPR_2843 TREPR_2843 TREPR_2843 1334440 1334778 + conserved hypothetical protein gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2843 TREPR_2844 TREPR_2844 TREPR_2844 1332489 1334459 + conserved hypothetical protein identified by match to protein family HMM PF03961 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2844 TREPR_2845 TREPR_2845 TREPR_2845 1331648 1332460 + RNA polymerase sigma-D factor identified by match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937 gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2845 TREPR_2846 TREPR_2846 TREPR_2846 1330952 1331638 + hypothetical protein identified by glimmer%3B putative gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2846 TREPR_2847 TREPR_2847 TREPR_2847 1330054 1330941 + flagellar synthesis regulator FleN identified by match to protein family HMM PF01656 gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2847 TREPR_2848 TREPR_2848 TREPR_2848 1328714 1330054 + flagellar biosynthesis protein FlhF (Flagella-associated GTP-bindingprotein) identified by match to protein family HMM PF00448%3B match to protein family HMM TIGR03499 gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2848 TREPR_2849 TREPR_2849 flhA flhA 1326586 1328685 + flagellar biosynthesis protein FlhA identified by match to protein family HMM PF00771%3B match to protein family HMM TIGR01398 gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2849 TREPR_2850 TREPR_2850 flhB flhB 1325404 1326546 + flagellar biosynthetic protein FlhB identified by match to protein family HMM PF01312%3B match to protein family HMM TIGR00328 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2850 TREPR_2851 TREPR_2851 fliR fliR 1324592 1325407 + flagellar biosynthetic protein FliR identified by match to protein family HMM PF01311%3B match to protein family HMM TIGR01400 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2851 TREPR_2852 TREPR_2852 fliQ fliQ 1324220 1324489 + flagellar biosynthetic protein FliQ identified by match to protein family HMM PF01313%3B match to protein family HMM TIGR01402 gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2852 TREPR_2853 TREPR_2853 fliP fliP 1323379 1324206 + flagellar biosynthetic protein FliP identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01103 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2853 TREPR_2854 TREPR_2854 TREPR_2854 1322717 1323382 + conserved hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2854 TREPR_2855 TREPR_2855 TREPR_2855 1321576 1322661 + flagellar motor switch protein FliY identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02480 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2855 TREPR_2856 TREPR_2856 fliM_2 fliM_2 1320548 1321579 + flagellar motor switch protein FliM identified by match to protein family HMM PF01052%3B match to protein family HMM PF02154%3B match to protein family HMM TIGR01397 gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2856 TREPR_2857 TREPR_2857 TREPR_2857 1320429 1320551 + hypothetical protein identified by glimmer%3B putative gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2857 TREPR_2858 TREPR_2858 fliL_1 fliL_1 1319831 1320394 + flagellar basal body-associated protein FliL identified by match to protein family HMM PF03748 gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2858 TREPR_2859 TREPR_2859 TREPR_2859 1319714 1319827 + hypothetical protein identified by glimmer%3B putative gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2859 TREPR_2860 TREPR_2860 TREPR_2860 1319014 1319745 + chemotaxis protein MotB identified by match to protein family HMM PF00691 gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2860 TREPR_2861 TREPR_2861 TREPR_2861 1318153 1318935 + chemotaxis protein PomA identified by match to protein family HMM PF01618 gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2861 TREPR_2862 TREPR_2862 TREPR_2862 1317950 1318147 + conserved domain protein identified by match to protein family HMM PF06289 gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2862 TREPR_2863 TREPR_2863 TREPR_2863 1316388 1317818 + flagellar hook protein FlgE identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM PF07559%3B match to protein family HMM TIGR03506 gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2863 TREPR_2864 TREPR_2864 flgD flgD 1315937 1316374 + flagellar hook capping protein identified by match to protein family HMM PF03963 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2864 TREPR_2865 TREPR_2865 TREPR_2865 1314521 1315912 + putative treponemal aqueous protein identified by match to protein family HMM PF02120 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2865 TREPR_2866 TREPR_2866 TREPR_2866 1313841 1314458 + 22.5 kDa protein gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2866 TREPR_2868 TREPR_2868 TREPR_2868 1313276 1313479 + conserved hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2868 TREPR_2869 TREPR_2869 TREPR_2869 1312852 1313283 + conserved hypothetical protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2869 TREPR_2870 TREPR_2870 TREPR_2870 1312668 1312838 + conserved hypothetical protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2870 TREPR_2871 TREPR_2871 TREPR_2871 1312024 1312362 + helix-turn-helix domain protein gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2871 TREPR_2872 TREPR_2872 TREPR_2872 1311699 1312040 + conserved hypothetical protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2872 TREPR_2875 TREPR_2875 TREPR_2875 1309939 1311318 + putative lipoprotein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2875 TREPR_2876 TREPR_2876 TREPR_2876 1308342 1309607 + chondroitin sulfate/heparin utilization regulation protein identified by match to protein family HMM PF02810%3B match to protein family HMM PF04055 gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2876 TREPR_2877 TREPR_2877 TREPR_2877 1307569 1308336 + carboxymethylenebutenolidase identified by match to protein family HMM PF01738%3B match to protein family HMM PF08840 gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2877 TREPR_2878 TREPR_2878 TREPR_2878 1306471 1307508 + molybdopterin binding domain protein identified by match to protein family HMM PF00994 gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2878 TREPR_2880 TREPR_2880 TREPR_2880 1304272 1305936 - 2-isopropylmalate synthase (Alpha-isopropylmalatesynthase) (Alpha-IPM synthetase) identified by match to protein family HMM PF00682 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2880 TREPR_2881 TREPR_2881 TREPR_2881 1303498 1304226 + glutamine amidotransferase class-I identified by match to protein family HMM PF00117 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2881 TREPR_2882 TREPR_2882 TREPR_2882 1303103 1303411 + ferredoxin%2C 2Fe-2S (2FeCpFd) gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2882 TREPR_2883 TREPR_2883 nifB nifB 1301750 1303036 + nitrogenase cofactor biosynthesis protein NifB identified by match to protein family HMM PF02579%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR01290 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2883 TREPR_2884 TREPR_2884 TREPR_2884 1300365 1301753 + nitrogenase molybdenum-iron protein beta chain (Nitrogenase component I) (Dinitrogenase) identified by match to protein family HMM PF00148 gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2884 TREPR_2885 TREPR_2885 nifE nifE 1298818 1300368 + nitrogenase MoFe cofactor biosynthesis protein NifE identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01283 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2885 TREPR_2886 TREPR_2886 nifK nifK 1297426 1298802 + nitrogenase molybdenum-iron protein beta chain identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01286 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2886 TREPR_2887 TREPR_2887 nifD nifD 1295773 1297413 + nitrogenase molybdenum-iron protein alpha chain identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01282%3B match to protein family HMM TIGR01862 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2887 TREPR_2888 TREPR_2888 TREPR_2888 1295386 1295763 + nitrogen regulatory protein P-II identified by match to protein family HMM PF00543%3B overlaps another CDS with the same product name gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2888 TREPR_2889 TREPR_2889 TREPR_2889 1295027 1295389 + nitrogen regulatory protein P-II identified by match to protein family HMM PF00543%3B overlaps another CDS with the same product name gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2889 TREPR_2890 TREPR_2890 nifH_2 nifH_2 1294089 1294931 + nitrogenase iron protein identified by match to protein family HMM PF00142%3B match to protein family HMM TIGR01287 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2890 TREPR_2892 TREPR_2892 TREPR_2892 1293760 1293888 - hypothetical protein identified by glimmer%3B putative gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2892 TREPR_2893 TREPR_2893 TREPR_2893 1292159 1293784 - transcriptional regulator%2C NifA subfamily%2C Fis Family identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2893 TREPR_2894 TREPR_2894 TREPR_2894 1291594 1292154 + conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2894 TREPR_2895 TREPR_2895 TREPR_2895 1290863 1291525 + conserved hypothetical protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2895 TREPR_2896 TREPR_2896 TREPR_2896 1289840 1290850 + cobalamin synthesis protein CobW identified by match to protein family HMM PF02492 gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2896 TREPR_2897 TREPR_2897 TREPR_2897 1288572 1289750 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2897 TREPR_2898 TREPR_2898 TREPR_2898 1287679 1288482 + methionine synthase identified by match to protein family HMM PF00809 gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2898 TREPR_2899 TREPR_2899 TREPR_2899 1286538 1287659 + conserved hypothetical protein gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2899 TREPR_2900 TREPR_2900 TREPR_2900 1285918 1286541 + methionine synthase identified by match to protein family HMM PF02310 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2900 TREPR_2901 TREPR_2901 TREPR_2901 1285513 1285755 - conserved hypothetical protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2901 TREPR_2902 TREPR_2902 TREPR_2902 1285251 1285487 - hypothetical protein identified by glimmer%3B putative gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2902 TREPR_2903 TREPR_2903 TREPR_2903 1282588 1285014 - MmoS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF02743 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2903 TREPR_2904 TREPR_2904 TREPR_2904 1281601 1282521 + hypothetical protein identified by glimmer%3B putative gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2904 TREPR_2905 TREPR_2905 TREPR_2905 1280623 1281249 + methionine synthase identified by match to protein family HMM PF02310 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2905 TREPR_2906 TREPR_2906 TREPR_2906 1279737 1279949 + conserved domain protein identified by match to protein family HMM PF03459%3B match to protein family HMM TIGR00638 gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2906 TREPR_2907 TREPR_2907 TREPR_2907 1279946 1280503 - PadR identified by match to protein family HMM PF03551 gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2907 TREPR_2908 TREPR_2908 TREPR_2908 1278629 1279705 + molybdenum import ATP-binding protein ModC%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00005 pseudogene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2908 TREPR_2909 TREPR_2909 modB modB 1277931 1278632 + molybdate ABC transporter%2C permease protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02141 pseudogene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2909 TREPR_2910 TREPR_2910 modA modA 1277113 1277934 + molybdate ABC transporter%2C periplasmic molybdate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256 gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2910 TREPR_2911 TREPR_2911 TREPR_2911 1275949 1277013 + conserved hypothetical protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2911 TREPR_2912 TREPR_2912 TREPR_2912 1274940 1275449 - phosphinothricin N-acetyltransferase (PPT N-acetyltransferase) (Phosphinothricin-resistance protein) identified by match to protein family HMM PF00583 gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2912 TREPR_2913 TREPR_2913 TREPR_2913 1274121 1274939 - putative PE protein gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2913 TREPR_2914 TREPR_2914 TREPR_2914 1273826 1273963 - aldo/keto reductase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2914 TREPR_2915 TREPR_2915 TREPR_2915 1273692 1273829 - aldo/keto reductase%3B this region contains one or more premature stops and/or frameshifts pseudogene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2915 TREPR_2916 TREPR_2916 TREPR_2916 1270712 1273642 + PAS domain protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2916 TREPR_2917 TREPR_2917 TREPR_2917 1269204 1270328 - hypothetical protein identified by glimmer%3B putative gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2917 TREPR_2919 TREPR_2919 TREPR_2919 1266702 1268999 + ftsk/spoiiie family protein identified by match to protein family HMM PF01580%3B match to protein family HMM PF09397 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2919 TREPR_2920 TREPR_2920 TREPR_2920 1264449 1266638 + lytic transglycosylase%2C catalytic identified by match to protein family HMM PF01464%3B match to protein family HMM PF07719 gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2920 TREPR_2921 TREPR_2921 TREPR_2921 1263257 1264312 + putative LysM domain protein identified by match to protein family HMM PF01476 gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2921 TREPR_2923 TREPR_2923 TREPR_2923 1263020 1263169 - hypothetical protein identified by glimmer%3B putative gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2923 TREPR_2924 TREPR_2924 TREPR_2924 1260212 1262860 - putative lipoprotein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2924 TREPR_2925 TREPR_2925 TREPR_2925 1259063 1259989 + hypothetical protein identified by glimmer%3B putative gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2925 TREPR_2926 TREPR_2926 TREPR_2926 1257438 1258904 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF04471%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720 gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2926 TREPR_2927 TREPR_2927 TREPR_2927 1254555 1257371 - putative ankyrin identified by match to protein family HMM PF00023 gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2927 TREPR_2928 TREPR_2928 TREPR_2928 1252588 1254489 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015 gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2928 TREPR_2929 TREPR_2929 TREPR_2929 1252113 1252400 - antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2929 TREPR_2930 TREPR_2930 TREPR_2930 1249911 1252067 + ABC-type multidrug/protein/lipid transport system%2C ATPase component identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2930 TREPR_2931 TREPR_2931 TREPR_2931 1248095 1249918 + ABC-type multidrug/protein/lipid transport system%2C ATPase component identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2931 TREPR_2932 TREPR_2932 TREPR_2932 1247278 1248129 + conserved hypothetical protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2932 TREPR_2933 TREPR_2933 recN recN 1245445 1247265 + DNA repair protein RecN identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634 gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2933 TREPR_2934 TREPR_2934 TREPR_2934 1244559 1245452 + putative inorganic polyphosphate/ATP-NAD kinase identified by match to protein family HMM PF01513 gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2934 TREPR_2935 TREPR_2935 TREPR_2935 1243426 1244535 + aminotransferase%2C DegT/DnrJ/EryC1/StrS family identified by match to protein family HMM PF01041 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2935 TREPR_2936 TREPR_2936 TREPR_2936 1242819 1243292 + purine-binding chemotaxis protein identified by match to protein family HMM PF01584 gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2936 TREPR_2937 TREPR_2937 TREPR_2937 1242066 1242746 + crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) identified by match to protein family HMM PF02075%3B match to protein family HMM TIGR00228 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2937 TREPR_2938 TREPR_2938 TREPR_2938 1241339 1242079 + conserved hypothetical protein identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2938 TREPR_2940 TREPR_2940 TREPR_2940 1239494 1241134 - phospholipase/carboxylesterase family protein identified by match to protein family HMM PF00753%3B match to protein family HMM PF02230 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2940 TREPR_2941 TREPR_2941 TREPR_2941 1237122 1239356 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2941 TREPR_2943 TREPR_2943 TREPR_2943 1236229 1237008 + conserved domain protein identified by match to protein family HMM PF01936 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2943 TREPR_2944 TREPR_2944 TREPR_2944 1234054 1236183 + hypothetical protein identified by glimmer%3B putative gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2944 TREPR_2945 TREPR_2945 TREPR_2945 1232258 1234057 + DNA or RNA helicase of superfamily II identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2945 TREPR_2946 TREPR_2946 TREPR_2946 1230413 1232161 - sulfate permease identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740 gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2946 TREPR_2947 TREPR_2947 TREPR_2947 1229867 1230238 - cadmium efflux system accessory protein identified by match to protein family HMM PF01022 gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2947 TREPR_2948 TREPR_2948 cadA cadA 1227678 1229864 - cadmium-exporting ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2948 TREPR_2950 TREPR_2950 ptsP_3 ptsP_3 1225921 1227543 + phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2950 TREPR_2951 TREPR_2951 TREPR_2951 1225655 1225912 + phosphocarrier protein HPr identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2951 TREPR_2952 TREPR_2952 TREPR_2952 1224228 1225658 + beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) identified by match to protein family HMM PF00232 gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2952 TREPR_2953 TREPR_2953 TREPR_2953 1222740 1224215 + putative 5'-Nucleotidase domain protein identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2953 TREPR_2954 TREPR_2954 TREPR_2954 1220773 1222725 + PTS system beta-glucoside-specific EIIBCA component identified by match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00830 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2954 TREPR_2955 TREPR_2955 TREPR_2955 1219843 1220697 + phosphoglycerate mutase family protein identified by match to protein family HMM PF00300 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2955 TREPR_2956 TREPR_2956 TREPR_2956 1218888 1219772 + YcsE identified by match to protein family HMM PF00702%3B match to protein family HMM PF08282 gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2956 TREPR_2957 TREPR_2957 TREPR_2957 1218049 1218891 + transcriptional antiterminator%2C BglG identified by match to protein family HMM PF03123 gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2957 TREPR_2958 TREPR_2958 TREPR_2958 1217045 1217839 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein identified by match to protein family HMM PF00037 gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2958 TREPR_2959 TREPR_2959 TREPR_2959 1216373 1217041 - cyclic nucleotide-binding protein identified by match to protein family HMM PF00027 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2959 TREPR_2960 TREPR_2960 TREPR_2960 1215492 1216304 - PEGA domain protein identified by match to protein family HMM PF08308 gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2960 TREPR_2961 TREPR_2961 TREPR_2961 1215000 1215377 + putative endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2961 TREPR_2962 TREPR_2962 ptsP_2 ptsP_2 1213286 1214905 + phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2962 TREPR_2963 TREPR_2963 TREPR_2963 1212013 1213284 + L-sorbose 1-phosphate reductase identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240 gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2963 TREPR_2964 TREPR_2964 pfkB pfkB 1210913 1211887 + 1-phosphofructokinase identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR03168 gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2964 TREPR_2965 TREPR_2965 TREPR_2965 1210476 1210916 + pts system mannitol-specific eiicba component identified by match to protein family HMM PF00359 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2965 TREPR_2966 TREPR_2966 TREPR_2966 1208433 1210466 + HTH domain protein identified by match to protein family HMM PF00874%3B match to protein family HMM PF08279 gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2966 TREPR_2967 TREPR_2967 TREPR_2967 1208161 1208418 + phosphocarrier protein HPr identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2967 TREPR_2968 TREPR_2968 TREPR_2968 1206725 1208146 + pts system mannitol-specific eiicba component identified by match to protein family HMM PF02302%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00851 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2968 TREPR_2970 TREPR_2970 TREPR_2970 1205900 1206370 + chemotaxis protein CheX identified by match to protein family HMM PF04509 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2970 TREPR_2971 TREPR_2971 TREPR_2971 1204529 1205875 + chemotaxis protein CheW identified by match to protein family HMM PF01584%3B match to protein family HMM PF01739 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2971 TREPR_2972 TREPR_2972 TREPR_2972 1202140 1204503 + chemotaxis protein CheA identified by match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895%3B match to protein family HMM PF07194 gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2972 TREPR_2973 TREPR_2973 TREPR_2973 1200139 1202064 + ribonuclease II family protein identified by match to protein family HMM PF00773 gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2973 TREPR_2974 TREPR_2974 TREPR_2974 1198643 1199998 - lysine-sensitive aspartokinase 3 (Lysine-sensitiveaspartokinase III) (Aspartate kinase III) identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00657 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2974 TREPR_2975 TREPR_2975 dapB dapB 1197837 1198646 - dihydrodipicolinate reductase identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2975 TREPR_2976 TREPR_2976 dapA dapA 1196826 1197758 - dihydrodipicolinate synthase identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674 gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2976 TREPR_2977 TREPR_2977 asd asd 1195629 1196744 - aspartate-semialdehyde dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR00978 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2977 TREPR_2978 TREPR_2978 TREPR_2978 1193430 1195610 + Mcp-2 identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2978 TREPR_2979 TREPR_2979 TREPR_2979 1192809 1193108 - conserved hypothetical protein gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2979 TREPR_2980 TREPR_2980 TREPR_2980 1192572 1192793 - hypothetical membrane protein gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2980 TREPR_2981 TREPR_2981 rplM rplM 1192060 1192488 - ribosomal protein L13 identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066 gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2981 TREPR_2982 TREPR_2982 rpsI rpsI 1191596 1191988 - ribosomal protein S9 identified by match to protein family HMM PF00380 gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2982 TREPR_2983 TREPR_2983 TREPR_2983 1190913 1191554 - putative RecA regulator RecX identified by match to protein family HMM PF02631 gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2983 TREPR_2984 TREPR_2984 TREPR_2984 1188760 1190628 - dead/deah box helicase domain protein identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2984 TREPR_2985 TREPR_2985 TREPR_2985 1187608 1188756 + DgoA protein identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2985 TREPR_2986 TREPR_2986 TREPR_2986 1185213 1187570 + beta-galactosidase identified by match to protein family HMM PF01301 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2986 TREPR_2987 TREPR_2987 TREPR_2987 1184348 1185193 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2987 TREPR_2988 TREPR_2988 TREPR_2988 1183467 1184345 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2988 TREPR_2989 TREPR_2989 TREPR_2989 1182140 1183444 + extracellular solute-binding protein family 1 identified by match to protein family HMM PF01547 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2989 TREPR_2990 TREPR_2990 TREPR_2990 1181197 1182015 + transcriptional regulator%2C IclR family identified by match to protein family HMM PF01614%3B match to protein family HMM PF09339 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2990 TREPR_2991 TREPR_2991 TREPR_2991 1180412 1181077 - khg/kdpg aldolase identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182 gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2991 TREPR_2992 TREPR_2992 TREPR_2992 1179312 1180415 - PfkB domain protein identified by match to protein family HMM PF00294 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2992 TREPR_2993 TREPR_2993 TREPR_2993 1178303 1179277 - oxidoreductase domain protein identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2993 TREPR_2994 TREPR_2994 TREPR_2994 1177721 1178242 - nitroreductase family protein identified by match to protein family HMM PF00881 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2994 TREPR_2995 TREPR_2995 TREPR_2995 1174476 1177706 + NB-ARC domain protein identified by match to protein family HMM PF00400%3B match to protein family HMM PF00656 gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2995 TREPR_2996 TREPR_2996 TREPR_2996 1173752 1174453 + conserved hypothetical protein gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2996 TREPR_2997 TREPR_2997 fusA_1 fusA_1 1171653 1173746 + translation elongation factor G identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2997 TREPR_2998 TREPR_2998 TREPR_2998 1170460 1171461 + uroporphyrinogen decarboxylase (URO-D) superfamily identified by match to protein family HMM PF01208 gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2998 TREPR_2999 TREPR_2999 TREPR_2999 1169115 1170308 + L-arabinose ABC transporter identified by match to protein family HMM PF02653 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_2999 TREPR_3000 TREPR_3000 TREPR_3000 1167547 1169073 + xylose import ATP-binding protein XylG identified by match to protein family HMM PF00005 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3000 TREPR_3001 TREPR_3001 TREPR_3001 1166292 1167440 + ABC transporter gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3001 TREPR_3002 TREPR_3002 TREPR_3002 1166109 1166252 + hypothetical protein identified by glimmer%3B putative gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3002 TREPR_3003 TREPR_3003 TREPR_3003 1165025 1166143 + D-xylose-binding protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3003 TREPR_3004 TREPR_3004 TREPR_3004 1163545 1165044 + Two-component response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00165 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3004 TREPR_3005 TREPR_3005 TREPR_3005 1162011 1163552 + putative histidine kinase internal region identified by match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF06580 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3005 TREPR_3006 TREPR_3006 TREPR_3006 1161064 1162014 + hypothetical protein identified by glimmer%3B putative gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3006 TREPR_3007 TREPR_3007 TREPR_3007 1159770 1160810 - M23/M37 peptidase domain protein identified by match to protein family HMM PF01551 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3007 TREPR_3008 TREPR_3008 TREPR_3008 1159281 1159739 - conserved hypothetical protein identified by match to protein family HMM PF04519 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3008 TREPR_3009 TREPR_3009 TREPR_3009 1158734 1159288 - conserved hypothetical protein identified by match to protein family HMM PF03885 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3009 TREPR_3010 TREPR_3010 TREPR_3010 1157725 1158669 - Tpl protein identified by match to protein family HMM PF04468 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3010 TREPR_3011 TREPR_3011 TREPR_3011 1156939 1157682 + putative methyltransferase type 11 identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3011 TREPR_3012 TREPR_3012 TREPR_3012 1155709 1156863 + chemotaxis response regulator protein-glutamate methylesterase identified by match to protein family HMM PF00072%3B match to protein family HMM PF01339 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3012 TREPR_3013 TREPR_3013 cheR cheR 1154856 1155677 + CheR methyltransferase%2C SAM-binding domain protein identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705 gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3013 TREPR_3014 TREPR_3014 pyrG pyrG 1153057 1154685 - CTP synthase identified by match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3014 TREPR_3015 TREPR_3015 TREPR_3015 1152296 1153033 - conserved hypothetical protein identified by match to protein family HMM PF06835 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3015 TREPR_3016 TREPR_3016 TREPR_3016 1151637 1152305 - conserved hypothetical protein identified by match to protein family HMM PF03968 gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3016 TREPR_3017 TREPR_3017 TREPR_3017 1150878 1151633 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3017 TREPR_3018 TREPR_3018 TREPR_3018 1149482 1150870 + MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3018 TREPR_3019 TREPR_3019 TREPR_3019 1149448 1149540 - hypothetical protein identified by glimmer%3B putative gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3019 TREPR_3020 TREPR_3020 TREPR_3020 1148398 1149444 + hypothetical protein identified by glimmer%3B putative gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3020 TREPR_3021 TREPR_3021 TREPR_3021 1145745 1146857 + peptidase M29%2C aminopeptidase II gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3021 TREPR_3022 TREPR_3022 TREPR_3022 1146850 1148304 - Xaa-His dipeptidase identified by match to protein family HMM PF01546%3B match to protein family HMM TIGR01887 gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3022 TREPR_3023 TREPR_3023 TREPR_3023 1144721 1145719 + oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3023 TREPR_3024 TREPR_3024 TREPR_3024 1144343 1144708 + hypothetical protein identified by glimmer%3B putative gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3024 TREPR_3025 TREPR_3025 TREPR_3025 1143947 1144315 + hypothetical protein identified by glimmer%3B putative gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3025 TREPR_3026 TREPR_3026 TREPR_3026 1142182 1143798 - oligopeptide ABC transporter substrate-binding protein identified by match to protein family HMM PF00496 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3026 TREPR_3027 TREPR_3027 TREPR_3027 1140245 1141867 - oligopeptide ABC transporter substrate-binding protein identified by match to protein family HMM PF00496 gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3027 TREPR_3028 TREPR_3028 TREPR_3028 1139162 1140133 - oligopeptide transport system permease protein AppB identified by match to protein family HMM PF00528 gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3028 TREPR_3029 TREPR_3029 TREPR_3029 1138258 1139169 - glutathione transport system permease protein GsiD identified by match to protein family HMM PF00528 gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3029 TREPR_3030 TREPR_3030 TREPR_3030 1137214 1138248 - dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3030 TREPR_3031 TREPR_3031 TREPR_3031 1136241 1137221 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3031 TREPR_3032 TREPR_3032 TREPR_3032 1134598 1136127 - conserved hypothetical protein identified by match to protein family HMM PF00013%3B match to protein family HMM PF01966%3B match to protein family HMM PF08668%3B match to protein family HMM TIGR00277%3B match to protein family HMM TIGR03319 gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3032 TREPR_3033 TREPR_3033 TREPR_3033 1134458 1134580 + hypothetical protein identified by glimmer%3B putative gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3033 TREPR_3034 TREPR_3034 TREPR_3034 1132993 1134429 - conserved hypothetical protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3034 TREPR_3035 TREPR_3035 TREPR_3035 1131825 1132892 - extracellular solute-binding protein%2C family 1 identified by match to protein family HMM PF01547 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3035 TREPR_3036 TREPR_3036 TREPR_3036 1130700 1131797 - Fe(3+) ions import ATP-binding protein FbpC identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3036 TREPR_3037 TREPR_3037 TREPR_3037 1129052 1130677 - Fe3+ ABC transporter permease identified by match to protein family HMM PF00528 gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3037 TREPR_3038 TREPR_3038 TREPR_3038 1128278 1129039 - conserved hypothetical protein identified by match to protein family HMM PF04794 gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3038 TREPR_3039 TREPR_3039 TREPR_3039 1127269 1128135 - metallophosphoesterase gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3039 TREPR_3040 TREPR_3040 TREPR_3040 1126444 1127265 + conserved hypothetical protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3040 TREPR_3041 TREPR_3041 TREPR_3041 1125652 1126407 + biotin-(acetyl-CoA-carboxylase) ligase identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00121 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3041 TREPR_3042 TREPR_3042 thrH thrH 1124467 1125084 - phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR02137 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3042 TREPR_3043 TREPR_3043 era era 1123528 1124454 + GTP-binding protein Era identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436 gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3043 TREPR_3044 TREPR_3044 TREPR_3044 1123007 1123486 + hypothetical protein identified by glimmer%3B putative gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3044 TREPR_3045 TREPR_3045 TREPR_3045 1121715 1122986 - putative lipoprotein identified by match to protein family HMM PF01547 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3045 TREPR_3046 TREPR_3046 TREPR_3046 1119838 1121661 + clostridium cellulosome enzyme%2C dockerin type I gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3046 TREPR_3048 TREPR_3048 TREPR_3048 1118717 1119067 + hypothetical protein identified by glimmer%3B putative gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3048 TREPR_3049 TREPR_3049 TREPR_3049 1119064 1119453 - conserved hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3049 TREPR_3050 TREPR_3050 TREPR_3050 1116736 1118556 - phosphoenolpyruvate carboxykinase (ATP) identified by match to protein family HMM PF00821 gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3050 TREPR_3051 TREPR_3051 bioD bioD 1115970 1116668 - dethiobiotin synthase identified by match to protein family HMM TIGR00347 gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3051 TREPR_3052 TREPR_3052 bioA bioA 1114611 1115960 - adenosylmethionine-8-amino-7-oxononanoate transaminase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00508 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3052 TREPR_3053 TREPR_3053 bioW bioW 1113817 1114575 - 6-carboxyhexanoate--CoA ligase identified by match to protein family HMM PF03744%3B match to protein family HMM TIGR01204 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3053 TREPR_3054 TREPR_3054 bioF bioF 1112637 1113812 - 8-amino-7-oxononanoate synthase identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00858 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3054 TREPR_3055 TREPR_3055 TREPR_3055 1111311 1112606 + putative arsenical pump membrane protein identified by match to protein family HMM PF02040%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3055 TREPR_3056 TREPR_3056 TREPR_3056 1110645 1111250 + response regulator receiver modulated metal dependent phosphohydrolase identified by match to protein family HMM PF00072 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3056 TREPR_3057 TREPR_3057 TREPR_3057 1108290 1110563 + Hpt sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3057 TREPR_3058 TREPR_3058 TREPR_3058 1107002 1108237 - metal dependent phosphohydrolase identified by match to protein family HMM PF01966 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3058 TREPR_3059 TREPR_3059 TREPR_3059 1105178 1106998 - methyl-accepting chemotaxis sensory transducer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3059 TREPR_3060 TREPR_3060 TREPR_3060 1102079 1105090 - DNA-directed DNA polymerase identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3060 TREPR_3061 TREPR_3061 TREPR_3061 1101526 1101981 + hypothetical protein identified by glimmer%3B putative gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3061 TREPR_3062 TREPR_3062 TREPR_3062 1101356 1101526 + hypothetical protein identified by glimmer%3B putative gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3062 TREPR_3063 TREPR_3063 TREPR_3063 1100987 1101289 - conserved hypothetical protein gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3063 TREPR_3064 TREPR_3064 TREPR_3064 1100195 1100980 + dihydropteroate synthase DhpS identified by match to protein family HMM PF00809 gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3064 TREPR_3065 TREPR_3065 TREPR_3065 1098797 1100128 + acetyl-coa decarbonylase/synthase complex subunit gamma (acds complex subunit gamma) (acds complex methyltransferase)(corrinoid/iron-sulfur component large subunit) identified by match to protein family HMM PF03599%3B match to protein family HMM PF04060 gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3065 TREPR_3066 TREPR_3066 TREPR_3066 1097840 1098784 + CO dehydrogenase/acetyl-CoA synthase delta subunit gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3066 TREPR_3067 TREPR_3067 TREPR_3067 1095614 1097758 + carbon monoxide dehydrogenase/acetyl-coa synthase subunit alpha (acetyl-coa synthase subunit) (codh/acs) (acs subunit) identified by match to protein family HMM PF03598%3B match to protein family HMM TIGR00316 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3067 TREPR_3068 TREPR_3068 TREPR_3068 1094768 1095541 + carbon monoxide dehydrogenase accessory protein CooC identified by match to protein family HMM PF01656 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3068 TREPR_3069 TREPR_3069 cooS cooS 1092873 1094768 + carbon-monoxide dehydrogenase%2C catalytic subunit identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01702 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3069 TREPR_3070 TREPR_3070 TREPR_3070 1092045 1092740 + conserved hypothetical protein gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3070 TREPR_3071 TREPR_3071 TREPR_3071 1090109 1092052 + ferredoxin identified by match to protein family HMM PF00111 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3071 TREPR_3072 TREPR_3072 TREPR_3072 1088597 1090063 + hypothetical protein identified by glimmer%3B putative gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3072 TREPR_3073 TREPR_3073 TREPR_3073 1087167 1088594 + hypothetical protein identified by glimmer%3B putative gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3073 TREPR_3074 TREPR_3074 TREPR_3074 1085334 1087043 + formate dehydrogenase H%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568 pseudogene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3074 TREPR_3075 TREPR_3075 TREPR_3075 1084851 1085285 + formate dehydrogenase H%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by match to protein family HMM PF04879 pseudogene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3075 TREPR_3076 TREPR_3076 TREPR_3076 1083473 1084651 + purine-cytosine permease-like protein identified by match to protein family HMM PF02133 gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3076 TREPR_3077 TREPR_3077 TREPR_3077 1083258 1083428 + hypothetical protein identified by glimmer%3B putative gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3077 TREPR_3079 TREPR_3079 TREPR_3079 1082790 1083086 - conserved hypothetical protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3079 TREPR_3080 TREPR_3080 selD selD 1081754 1082806 - selenide%2C water dikinase identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR00476 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3080 TREPR_3081 TREPR_3081 yedF yedF 1081108 1081731 - selenium metabolism protein YedF identified by match to protein family HMM PF01206%3B match to protein family HMM TIGR03527 gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3081 TREPR_3082 TREPR_3082 TREPR_3082 1079907 1081100 - cysteine desulfurase family protein identified by match to protein family HMM PF00266%3B match to protein family HMM PF01053%3B match to protein family HMM TIGR01977 gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3082 TREPR_3083 TREPR_3083 selB selB 1077895 1079853 + selenocysteine-specific translation elongation factor identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF09107%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00475 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3083 TREPR_3084 TREPR_3084 selA selA 1076415 1077893 + L-seryl-tRNA(Sec) selenium transferase identified by match to protein family HMM PF03841%3B match to protein family HMM TIGR00474 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3084 TREPR_3085 TREPR_3085 TREPR_3085 1076276 1076404 + hypothetical protein identified by glimmer%3B putative gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3085 TREPR_3086 TREPR_3086 TREPR_3086 1075961 1076152 - hypothetical protein identified by glimmer%3B putative gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3086 TREPR_3087 TREPR_3087 TREPR_3087 1075306 1075971 - L-cystine transport system permease protein TcyB identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3087 TREPR_3088 TREPR_3088 TREPR_3088 1074423 1075232 - probable amino-acid ABC transporter%2Csubstrate-binding protein identified by match to protein family HMM PF00497 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3088 TREPR_3089 TREPR_3089 TREPR_3089 1073537 1074343 - L-cystine import ATP-binding protein TcyN identified by match to protein family HMM PF00005 gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3089 TREPR_3090 TREPR_3090 TREPR_3090 1072357 1073511 - 2-hydroxyglutaryl-CoA dehydratase%2C D-component identified by match to protein family HMM PF06050 gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3090 TREPR_3091 TREPR_3091 TREPR_3091 1071559 1072356 - (R)-2-hydroxyglutaryl-CoA dehydratase activator identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3091 TREPR_3092 TREPR_3092 TREPR_3092 1071468 1071587 - hypothetical protein identified by glimmer%3B putative gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3092 TREPR_3093 TREPR_3093 TREPR_3093 1070856 1071467 + molybdopterin-guanine dinucleotide biosynthesis protein A gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3093 TREPR_3094 TREPR_3094 TREPR_3094 1069499 1070863 + iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI) identified by match to protein family HMM PF00037%3B match to protein family HMM PF02256%3B match to protein family HMM PF02906%3B match to protein family HMM TIGR02512 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3094 TREPR_3095 TREPR_3095 TREPR_3095 1068951 1069496 + protein AegA identified by match to protein family HMM PF00037 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3095 TREPR_3096 TREPR_3096 TREPR_3096 1068556 1068936 + hypothetical protein identified by glimmer%3B putative gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3096 TREPR_3097 TREPR_3097 TREPR_3097 1067822 1068559 + phenylacetyl CoA identified by match to protein family HMM PF02634 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3097 TREPR_3098 TREPR_3098 TREPR_3098 1067277 1067795 + protein AegA identified by match to protein family HMM PF00037 gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3098 TREPR_3099 TREPR_3099 fdhA fdhA 1065082 1067280 + formate dehydrogenase%2C alpha subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01591 gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3099 TREPR_3101 TREPR_3101 TREPR_3101 1064278 1064919 - conserved hypothetical protein gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3101 TREPR_3102 TREPR_3102 TREPR_3102 1062984 1064204 - molybdopterin biosynthesis protein MoeA identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3102 TREPR_3103 TREPR_3103 TREPR_3103 1062643 1062906 - conserved hypothetical protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3103 TREPR_3104 TREPR_3104 TREPR_3104 1061625 1062425 - conserved hypothetical protein gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3104 TREPR_3105 TREPR_3105 TREPR_3105 1061274 1061597 - conserved hypothetical protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3105 TREPR_3106 TREPR_3106 TREPR_3106 1061036 1061209 - hypothetical protein identified by glimmer%3B putative gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3106 TREPR_3107 TREPR_3107 TREPR_3107 1060200 1060973 - conserved hypothetical protein gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3107 TREPR_3108 TREPR_3108 TREPR_3108 1060040 1060219 - hypothetical protein identified by glimmer%3B putative gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3108 TREPR_3109 TREPR_3109 TREPR_3109 1059415 1060005 - conserved hypothetical protein gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3109 TREPR_3110 TREPR_3110 TREPR_3110 1058664 1059272 - conserved hypothetical protein identified by match to protein family HMM PF08719%3B match to protein family HMM TIGR02464 gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3110 TREPR_3111 TREPR_3111 TREPR_3111 1057807 1058655 - conserved hypothetical protein gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3111 TREPR_3112 TREPR_3112 TREPR_3112 1057047 1057670 - peptidase%2C S24 family identified by match to protein family HMM PF00717 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3112 TREPR_3113 TREPR_3113 TREPR_3113 1056792 1057016 - hypothetical protein identified by glimmer%3B putative gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3113 TREPR_3114 TREPR_3114 TREPR_3114 1055751 1056779 - hypothetical protein identified by glimmer%3B putative gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3114 TREPR_3115 TREPR_3115 TREPR_3115 1050775 1055754 - endonuclease and methylase LlaGI identified by match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3115 TREPR_3116 TREPR_3116 TREPR_3116 1048068 1050731 - RecF/RecN/SMC N-terminal domain protein identified by match to protein family HMM PF02463 gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3116 TREPR_3118 TREPR_3118 TREPR_3118 1046844 1047842 - conserved hypothetical protein identified by match to protein family HMM PF06250 gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3118 TREPR_3119 TREPR_3119 TREPR_3119 1046437 1046784 - conserved hypothetical protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3119 TREPR_3120 TREPR_3120 TREPR_3120 1046234 1046398 - conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3120 TREPR_3122 TREPR_3122 TREPR_3122 1043196 1044947 - ferredoxin 2 identified by match to protein family HMM PF00037%3B match to protein family HMM PF04060 gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3122 TREPR_3123 TREPR_3123 TREPR_3123 1041979 1043199 - stage II sporulation E family protein identified by match to protein family HMM PF07228 gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3123 TREPR_3124 TREPR_3124 TREPR_3124 1041088 1041939 + bifunctional protein FolD identified by match to protein family HMM PF00763%3B match to protein family HMM PF02882 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3124 TREPR_3125 TREPR_3125 TREPR_3125 1040390 1041019 + methenyl-THF cyclohydrolase identified by match to protein family HMM PF04961 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3125 TREPR_3126 TREPR_3126 fhs fhs 1038588 1040321 + formate--tetrahydrofolate ligase identified by match to protein family HMM PF01268 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3126 TREPR_3127 TREPR_3127 TREPR_3127 1037563 1038507 + methylenetetrahydrofolate reductase (NAD(P)H) identified by match to protein family HMM PF02219 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3127 TREPR_3128 TREPR_3128 TREPR_3128 1037378 1037512 - hypothetical protein identified by glimmer%3B putative gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3128 TREPR_3129 TREPR_3129 TREPR_3129 1036812 1037375 + putative cobalt transport permease%2C CbiQ family identified by match to protein family HMM PF02361 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3129 TREPR_3130 TREPR_3130 TREPR_3130 1035988 1036815 + cobalt import ATP-binding protein CbiO 2 identified by match to protein family HMM PF00005 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3130 TREPR_3131 TREPR_3131 TREPR_3131 1035431 1035985 + conserved hypothetical protein gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3131 TREPR_3132 TREPR_3132 TREPR_3132 1034497 1035270 + cobyrinic Acid a%2Cc-diamide synthase identified by match to protein family HMM PF01656 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3132 TREPR_3133 TREPR_3133 TREPR_3133 1032458 1033861 - tetrahydrofolate synthase identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01499 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3133 TREPR_3134 TREPR_3134 fliM_1 fliM_1 1031239 1032267 - flagellar motor switch protein FliM identified by match to protein family HMM PF01052%3B match to protein family HMM PF02154%3B match to protein family HMM TIGR01397 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3134 TREPR_3135 TREPR_3135 TREPR_3135 1030347 1031228 + N-acetyltransferase superfamily identified by match to protein family HMM PF00797 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3135 TREPR_3136 TREPR_3136 TREPR_3136 1028895 1030271 + efflux transporter protein identified by match to protein family HMM PF07690 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3136 TREPR_3137 TREPR_3137 coaE coaE 1028278 1028919 - dephospho-CoA kinase identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3137 TREPR_3138 TREPR_3138 TREPR_3138 1027529 1028272 - sporulation repeat domain protein identified by match to protein family HMM PF05036 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3138 TREPR_3139 TREPR_3139 TREPR_3139 1025892 1027451 + bacterial extracellular solute-binding protein%2C family 5 identified by match to protein family HMM PF00496 gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3139 TREPR_3140 TREPR_3140 TREPR_3140 1025668 1025805 + hypothetical protein identified by glimmer%3B putative gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3140 TREPR_3141 TREPR_3141 TREPR_3141 1024030 1025469 + conserved hypothetical protein gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3141 TREPR_3142 TREPR_3142 TREPR_3142 1023194 1023988 - hypothetical protein identified by glimmer%3B putative gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3142 TREPR_3143 TREPR_3143 TREPR_3143 1021805 1023097 - hypothetical protein identified by glimmer%3B putative gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3143 TREPR_3144 TREPR_3144 TREPR_3144 1021425 1021751 + putative lipoprotein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3144 TREPR_3145 TREPR_3145 TREPR_3145 1020741 1021403 + hypothetical protein identified by glimmer%3B putative gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3145 TREPR_3146 TREPR_3146 TREPR_3146 1020000 1020572 - transcriptional regulator%2C TetR family gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3146 TREPR_3147 TREPR_3147 TREPR_3147 1018648 1019817 + decarboxylase%2C pyridoxal-dependent family identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3147 TREPR_3148 TREPR_3148 TREPR_3148 1018169 1018426 - conserved hypothetical protein gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3148 TREPR_3149 TREPR_3149 TREPR_3149 1017738 1018166 - PIN domain protein identified by match to protein family HMM PF01850 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3149 TREPR_3150 TREPR_3150 TREPR_3150 1017536 1017745 - hypothetical protein identified by glimmer%3B putative gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3150 TREPR_3151 TREPR_3151 TREPR_3151 1014467 1017499 - PAS/PAC sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3151 TREPR_3152 TREPR_3152 TREPR_3152 1011586 1014447 + hypothetical protein identified by glimmer%3B putative gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3152 TREPR_3153 TREPR_3153 rpsP rpsP 1011112 1011360 - ribosomal protein S16 identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3153 TREPR_3154 TREPR_3154 TREPR_3154 1010854 1011087 - conserved domain protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3154 TREPR_3155 TREPR_3155 rimM rimM 1010291 1010797 - 16S rRNA processing protein RimM identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273 gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3155 TREPR_3156 TREPR_3156 trmD trmD 1009458 1010282 - tRNA (guanine-N(1)-)-methyltransferase identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3156 TREPR_3157 TREPR_3157 rplS rplS 1009061 1009480 - ribosomal protein L19 identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3157 TREPR_3158 TREPR_3158 TREPR_3158 1008005 1009033 - dinap1-interacting protein 5%3B this region contains one or more premature stops and/or frameshifts pseudogene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3158 TREPR_3159 TREPR_3159 TREPR_3159 1007755 1008000 - FlhB domain protein gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3159 TREPR_3160 TREPR_3160 TREPR_3160 1006427 1007758 - HD domain protein identified by match to protein family HMM PF01966 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3160 TREPR_3161 TREPR_3161 TREPR_3161 1006081 1006437 - conserved hypothetical protein identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3161 TREPR_3162 TREPR_3162 TREPR_3162 1005436 1005903 - conserved hypothetical protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3162 TREPR_3163 TREPR_3163 TREPR_3163 1004309 1005436 - ggdef domain/hd domain protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3163 TREPR_3164 TREPR_3164 TREPR_3164 1003661 1004272 + two component transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3164 TREPR_3165 TREPR_3165 TREPR_3165 1002451 1003638 + conserved hypothetical protein identified by match to protein family HMM PF02518 gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3165 TREPR_3166 TREPR_3166 mtnN mtnN 1001629 1002339 - MTA/SAH nucleosidase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704 gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3166 TREPR_3167 TREPR_3167 TREPR_3167 1000976 1001629 - hypothetical protein identified by glimmer%3B putative gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3167 TREPR_3168 TREPR_3168 TREPR_3168 999290 1000927 + putative tetratricopeptide TPR_2 repeat protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3168 TREPR_3169 TREPR_3169 TREPR_3169 997339 999288 + hypothetical protein identified by glimmer%3B putative gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3169 TREPR_3170 TREPR_3170 TREPR_3170 996041 997330 + putative lipoprotein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3170 TREPR_3171 TREPR_3171 TREPR_3171 992760 996047 + putative extracellular nuclease identified by match to protein family HMM PF02415 gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3171 TREPR_3172 TREPR_3172 TREPR_3172 990978 992747 + putative lipoprotein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3172 TREPR_3173 TREPR_3173 TREPR_3173 989493 990779 + putative lipoprotein gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3173 TREPR_3174 TREPR_3174 TREPR_3174 986255 989479 + putative extracellular nuclease gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3174 TREPR_3175 TREPR_3175 TREPR_3175 984247 986280 + putative lipoprotein gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3175 TREPR_3176 TREPR_3176 luxS luxS 983547 984023 - S-ribosylhomocysteinase LuxS identified by match to protein family HMM PF02664 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3176 TREPR_3177 TREPR_3177 TREPR_3177 982628 983527 + (S)-2-hydroxy-acid oxidase identified by match to protein family HMM PF01070%3B match to protein family HMM PF01180 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3177 TREPR_3178 TREPR_3178 TREPR_3178 978989 982519 + vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) identified by match to protein family HMM PF02867%3B match to protein family HMM PF08471%3B match to protein family HMM TIGR02504 gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3178 TREPR_3179 TREPR_3179 TREPR_3179 977925 978812 + hypothetical protein identified by glimmer%3B putative gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3179 TREPR_3180 TREPR_3180 TREPR_3180 976328 977761 - conserved hypothetical protein gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3180 TREPR_3181 TREPR_3181 TREPR_3181 975378 976331 - haloacid dehalogenase domain protein hydrolase%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00702 pseudogene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3181 TREPR_3182 TREPR_3182 TREPR_3182 973956 975326 - putative acyltransferase domain protein gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3182 TREPR_3183 TREPR_3183 TREPR_3183 972977 973954 - adhesion protein identified by match to protein family HMM PF01297 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3183 TREPR_3184 TREPR_3184 TREPR_3184 972111 972980 - zinc import ATP-binding protein ZnuC identified by match to protein family HMM PF00005 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3184 TREPR_3185 TREPR_3185 TREPR_3185 971269 972114 - ABC-type transport system%2C permease component identified by match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3185 TREPR_3186 TREPR_3186 TREPR_3186 969806 971065 + small ribosomal subunit Rsm22 family identified by match to protein family HMM PF09243 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3186 TREPR_3187 TREPR_3187 TREPR_3187 969465 969806 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3187 TREPR_3188 TREPR_3188 engA engA 967886 969463 + ribosome-associated GTPase EngA identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650%3B match to protein family HMM TIGR03594 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3188 TREPR_3189 TREPR_3189 ptsP_1 ptsP_1 966138 967877 + phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3189 TREPR_3190 TREPR_3190 TREPR_3190 965800 966006 - conserved hypothetical protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3190 TREPR_3191 TREPR_3191 TREPR_3191 963374 965803 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3191 TREPR_3192 TREPR_3192 TREPR_3192 962543 963328 + cytochrome C biogenesis protein identified by match to protein family HMM PF01578 gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3192 TREPR_3193 TREPR_3193 TREPR_3193 961828 962538 + putative ResB family protein gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3193 TREPR_3194 TREPR_3194 TREPR_3194 959390 961825 + multi-sensor hybrid histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3194 TREPR_3195 TREPR_3195 TREPR_3195 959256 959384 + hypothetical protein identified by glimmer%3B putative gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3195 TREPR_3196 TREPR_3196 TREPR_3196 957207 959114 - chaperone protein HtpG identified by match to protein family HMM PF00183%3B match to protein family HMM PF02518 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3196 TREPR_3197 TREPR_3197 TREPR_3197 956537 957205 - cyclase family protein identified by match to protein family HMM PF04199 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3197 TREPR_3198 TREPR_3198 TREPR_3198 955239 956414 - bacterial pre-peptidase C- domain family identified by match to protein family HMM PF04151 gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3198 TREPR_3199 TREPR_3199 TREPR_3199 954695 954895 + hypothetical protein identified by glimmer%3B putative gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3199 TREPR_3200 TREPR_3200 radA radA 953243 954646 - DNA repair protein RadA identified by match to protein family HMM TIGR00416 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3200 TREPR_3201 TREPR_3201 TREPR_3201 951974 953170 + hypothetical protein identified by glimmer%3B putative gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3201 TREPR_3203 TREPR_3203 ybaK ybaK 951152 951652 + YbaK/ebsC protein identified by match to protein family HMM PF04073%3B match to protein family HMM TIGR00011 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3203 TREPR_3204 TREPR_3204 TREPR_3204 948981 951149 + histidinol dehydrogenase (HDH) identified by match to protein family HMM PF00815%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00069 gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3204 TREPR_3205 TREPR_3205 hisC hisC 947878 948939 + histidinol-phosphate transaminase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3205 TREPR_3206 TREPR_3206 TREPR_3206 946565 947881 + histidine biosynthesis bifunctional protein hisIE identified by match to protein family HMM PF00977%3B match to protein family HMM PF01502%3B match to protein family HMM PF01503%3B match to protein family HMM TIGR03188 gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3206 TREPR_3207 TREPR_3207 hisF hisF 945771 946571 + imidazoleglycerol phosphate synthase%2C cyclase subunit identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3207 TREPR_3208 TREPR_3208 hisH hisH 945114 945743 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR01855 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3208 TREPR_3209 TREPR_3209 hisB hisB 944474 945100 + imidazoleglycerol-phosphate dehydratase identified by match to protein family HMM PF00475 gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3209 TREPR_3210 TREPR_3210 TREPR_3210 943582 944436 + ATP phosphoribosyltransferase identified by match to protein family HMM PF01634%3B match to protein family HMM PF08029%3B match to protein family HMM TIGR00070%3B match to protein family HMM TIGR03455 gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3210 TREPR_3211 TREPR_3211 TREPR_3211 943408 943560 - hypothetical protein identified by glimmer%3B putative gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3211 TREPR_3212 TREPR_3212 TREPR_3212 942795 943319 - NADPH-flavin oxidoreductase identified by match to protein family HMM PF00881 gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3212 TREPR_3213 TREPR_3213 TREPR_3213 942332 942793 - conserved hypothetical protein gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3213 TREPR_3214 TREPR_3214 TREPR_3214 941127 942332 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3214 TREPR_3215 TREPR_3215 TREPR_3215 939722 940552 - conserved hypothetical protein identified by match to protein family HMM PF00733%3B match to protein family HMM TIGR00268 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3215 TREPR_3216 TREPR_3216 TREPR_3216 938306 939712 - conserved hypothetical protein identified by match to protein family HMM PF01969%3B match to protein family HMM TIGR00299 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3216 TREPR_3217 TREPR_3217 TREPR_3217 937612 938325 - phosphoribosylaminoimidazole carboxylase ncair mutase subunit gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3217 TREPR_3218 TREPR_3218 TREPR_3218 937348 937512 - hypothetical protein identified by glimmer%3B putative gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3218 TREPR_3219 TREPR_3219 TREPR_3219 936237 937283 - thiamine-binding periplasmic protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01254 gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3219 TREPR_3220 TREPR_3220 TREPR_3220 934480 936267 - abc transporter integral membrane protein identified by match to protein family HMM PF00528 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3220 TREPR_3221 TREPR_3221 TREPR_3221 933420 934490 - Fe(3+) ions import ATP-binding protein FbpC identified by match to protein family HMM PF00005 gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3221 TREPR_3222 TREPR_3222 TREPR_3222 933153 933275 + hypothetical protein identified by glimmer%3B putative gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3222 TREPR_3223 TREPR_3223 TREPR_3223 930386 933067 + hypothetical protein identified by glimmer%3B putative gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3223 TREPR_3226 TREPR_3226 aroF aroF 928662 929687 - 3-deoxy-7-phosphoheptulonate synthase identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01361 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3226 TREPR_3227 TREPR_3227 TREPR_3227 927783 928649 - prephenate dehydrogenase identified by match to protein family HMM PF02153 gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3227 TREPR_3228 TREPR_3228 TREPR_3228 926340 927530 + MFS transporter identified by match to protein family HMM PF07690 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3228 TREPR_3229 TREPR_3229 leuS leuS 923827 926316 + leucine--tRNA ligase identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3229 TREPR_3230 TREPR_3230 TREPR_3230 922612 923670 + hypothetical protein identified by glimmer%3B putative gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3230 TREPR_3231 TREPR_3231 TREPR_3231 922468 922587 + hypothetical protein identified by glimmer%3B putative gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3231 TREPR_3232 TREPR_3232 TREPR_3232 922031 922465 - conserved hypothetical protein gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3232 TREPR_3233 TREPR_3233 TREPR_3233 921756 922019 + addiction module toxin%2C Txe/YoeB family identified by match to protein family HMM PF06769%3B match to protein family HMM TIGR02116 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3233 TREPR_3234 TREPR_3234 TREPR_3234 921482 921763 + addiction module antitoxin%2C RelB/DinJ family identified by match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3234 TREPR_3236 TREPR_3236 TREPR_3236 920627 921082 - stress response protein identified by match to protein family HMM PF00011 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3236 TREPR_3237 TREPR_3237 TREPR_3237 919814 920455 + conserved hypothetical protein identified by match to protein family HMM PF06555 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3237 TREPR_3238 TREPR_3238 TREPR_3238 917425 919803 + fnip gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3238 TREPR_3239 TREPR_3239 TREPR_3239 916855 917211 - murein hydrolase exporter identified by match to protein family HMM PF03788 gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3239 TREPR_3240 TREPR_3240 TREPR_3240 916175 916852 - LrgB family protein identified by match to protein family HMM PF04172 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3240 TREPR_3241 TREPR_3241 TREPR_3241 914692 916137 + Trk system potassium uptake protein TrkH identified by match to protein family HMM PF02386 gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3241 TREPR_3242 TREPR_3242 TREPR_3242 913250 914695 + Trk system potassium uptake protein TrkA identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3242 TREPR_3243 TREPR_3243 TREPR_3243 912537 913157 + putative rubredoxin identified by match to protein family HMM PF00301 gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3243 TREPR_3244 TREPR_3244 TREPR_3244 913147 913278 - hypothetical protein identified by glimmer%3B putative gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3244 TREPR_3246 TREPR_3246 TREPR_3246 911792 912013 + hypothetical protein identified by glimmer%3B putative gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3246 TREPR_3247 TREPR_3247 TREPR_3247 911452 911805 + nucleotidyltransferase family protein identified by match to protein family HMM PF01909 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3247 TREPR_3248 TREPR_3248 TREPR_3248 910853 911206 + transposase IS4 family protein gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3248 TREPR_3249 TREPR_3249 TREPR_3249 910440 910787 + ChpK identified by match to protein family HMM PF02452 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3249 TREPR_3250 TREPR_3250 TREPR_3250 910298 910453 + ChpI protein gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3250 TREPR_3251 TREPR_3251 TREPR_3251 906182 909742 + repeat protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF09479%3B match to protein family HMM TIGR02543 pseudogene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3251 TREPR_3252 TREPR_3252 TREPR_3252 905619 905765 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3252 TREPR_3253 TREPR_3253 TREPR_3253 905348 905629 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3253 TREPR_3254 TREPR_3254 aroA aroA 903908 905278 + 3-phosphoshikimate 1-carboxyvinyltransferase identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01356 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3254 TREPR_3255 TREPR_3255 infA infA 903456 903680 - translation initiation factor IF-1 identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3255 TREPR_3256 TREPR_3256 TREPR_3256 902827 903447 + Smr domain protein identified by match to protein family HMM PF01713 gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3256 TREPR_3257 TREPR_3257 TREPR_3257 901380 902813 + hypothetical protein identified by glimmer%3B putative gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3257 TREPR_3258 TREPR_3258 TREPR_3258 900547 901191 + putative lipoprotein gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3258 TREPR_3260 TREPR_3260 TREPR_3260 899475 900554 + VWA domain protein identified by match to protein family HMM PF00092 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3260 TREPR_3261 TREPR_3261 TREPR_3261 898477 899478 + von Willebrand factor%2C type A identified by match to protein family HMM PF00092 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3261 TREPR_3262 TREPR_3262 TREPR_3262 897464 898480 + hypothetical protein identified by glimmer%3B putative gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3262 TREPR_3263 TREPR_3263 TREPR_3263 896559 897467 + conserved hypothetical protein identified by match to protein family HMM PF01882 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3263 TREPR_3264 TREPR_3264 moxR moxR 895416 896549 + ATPase%2C MoxR family identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3264 TREPR_3265 TREPR_3265 TREPR_3265 894043 895332 - aspartate aminotransferase identified by match to protein family HMM PF00155 gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3265 TREPR_3266 TREPR_3266 TREPR_3266 893251 893922 + nickel import ATP-binding protein NikE identified by match to protein family HMM PF00005 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3266 TREPR_3267 TREPR_3267 TREPR_3267 892335 893267 + oligopeptide/dipeptide ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3267 TREPR_3268 TREPR_3268 TREPR_3268 891497 892330 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3268 TREPR_3269 TREPR_3269 TREPR_3269 890514 891500 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3269 TREPR_3270 TREPR_3270 TREPR_3270 888911 890509 + peptide/opine/nickel ABC transporter identified by match to protein family HMM PF00496 gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3270 TREPR_3271 TREPR_3271 TREPR_3271 888094 888861 + ferrichrome transport ATP-binding protein FhuC identified by match to protein family HMM PF00005 gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3271 TREPR_3272 TREPR_3272 TREPR_3272 887030 888097 + transport system permease protein identified by match to protein family HMM PF01032 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3272 TREPR_3273 TREPR_3273 TREPR_3273 885955 887037 + Fe3+-siderophore ABC transporter%2C periplasmic Fe3+-siderophore-binding protein identified by match to protein family HMM PF01497 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3273 TREPR_3274 TREPR_3274 TREPR_3274 885421 885945 + FwdE family protein identified by match to protein family HMM PF02663 gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3274 TREPR_3275 TREPR_3275 TREPR_3275 884552 885319 + iron(III) dicitrate transport ATP-binding protein FecE identified by match to protein family HMM PF00005 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3275 TREPR_3276 TREPR_3276 TREPR_3276 883461 884558 + transport system permease protein identified by match to protein family HMM PF01032 gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3276 TREPR_3277 TREPR_3277 TREPR_3277 882407 883468 + periplasmic binding protein identified by match to protein family HMM PF01497 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3277 TREPR_3278 TREPR_3278 TREPR_3278 881732 882385 + ubiquinone/menaquinone biosynthesis methyltransferase UbiE identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3278 TREPR_3280 TREPR_3280 TREPR_3280 880524 881393 + methyltransferase type 11 identified by match to protein family HMM PF08241 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3280 TREPR_3281 TREPR_3281 TREPR_3281 879668 880534 + conserved hypothetical protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3281 TREPR_3282 TREPR_3282 TREPR_3282 877487 878695 + stage II sporulation E family protein identified by match to protein family HMM PF07228 gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3282 TREPR_3283 TREPR_3283 TREPR_3283 875727 877490 + ferredoxin 2 identified by match to protein family HMM PF00037%3B match to protein family HMM PF04060 gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3283 TREPR_3284 TREPR_3284 TREPR_3284 874786 875715 + putative transcriptional regulator identified by match to protein family HMM PF00126 gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3284 TREPR_3286 TREPR_3286 TREPR_3286 874002 874493 - Fe-hydrogenase gamma subunit identified by match to protein family HMM PF01257 gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3286 TREPR_3287 TREPR_3287 TREPR_3287 872126 874009 - NADH dehydrogenase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3287 TREPR_3288 TREPR_3288 TREPR_3288 870374 872107 - hydrogenase-1 identified by match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM PF02256%3B match to protein family HMM PF02906%3B match to protein family HMM TIGR02512 gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3288 TREPR_3289 TREPR_3289 TREPR_3289 869227 869886 + DNA polymerase III subunit alpha identified by match to protein family HMM PF01336 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3289 TREPR_3290 TREPR_3290 TREPR_3290 868868 869035 - hypothetical protein identified by glimmer%3B putative gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3290 TREPR_3291 TREPR_3291 TREPR_3291 868594 868797 - hypothetical protein identified by glimmer%3B putative gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3291 TREPR_3292 TREPR_3292 TREPR_3292 867358 868365 - cobalamin identified by match to protein family HMM PF01891 gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3292 TREPR_3293 TREPR_3293 cbiQ cbiQ 866512 867330 - cobalt ABC transporter%2C permease protein CbiQ identified by match to protein family HMM PF02361%3B match to protein family HMM TIGR02454 gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3293 TREPR_3294 TREPR_3294 TREPR_3294 865751 866524 - cobalt import ATP-binding protein CbiO 2 identified by match to protein family HMM PF00005 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3294 TREPR_3295 TREPR_3295 TREPR_3295 865132 865710 + glutathione import ATP-binding protein GsiA identified by match to protein family HMM PF00005 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3295 TREPR_3296 TREPR_3296 TREPR_3296 864664 865044 - putative lipoprotein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3296 TREPR_3297 TREPR_3297 TREPR_3297 861876 864512 - aldehyde-alcohol dehydrogenase 2 identified by match to protein family HMM PF00171%3B match to protein family HMM PF00465 gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3297 TREPR_3298 TREPR_3298 TREPR_3298 861130 861879 - aminoglycoside phosphotransferase identified by match to protein family HMM PF01163%3B match to protein family HMM PF01636 gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3298 TREPR_3299 TREPR_3299 TREPR_3299 859847 860881 - hypothetical protein identified by glimmer%3B putative gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3299 TREPR_3300 TREPR_3300 TREPR_3300 857921 859663 + hydrogen dehydrogenase identified by match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM PF02906 gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3300 TREPR_3301 TREPR_3301 TREPR_3301 856014 857918 + NAD-dependent formate dehydrogenase beta subunit identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3301 TREPR_3302 TREPR_3302 TREPR_3302 855510 856001 + Fe-hydrogenase gamma subunit identified by match to protein family HMM PF01257 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3302 TREPR_3303 TREPR_3303 TREPR_3303 854751 855281 + peroxiredoxin Hyr1 identified by match to protein family HMM PF00255 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3303 TREPR_3304 TREPR_3304 TREPR_3304 853933 854688 + permease identified by match to protein family HMM PF06541 gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3304 TREPR_3305 TREPR_3305 TREPR_3305 853259 853930 + RelA/SpoT domain protein identified by match to protein family HMM PF04607 gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3305 TREPR_3306 TREPR_3306 TREPR_3306 852781 853245 + conserved hypothetical protein identified by match to protein family HMM PF06803 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3306 TREPR_3307 TREPR_3307 TREPR_3307 851014 852744 + chaperone protein DnaK identified by match to protein family HMM PF00012 gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3307 TREPR_3308 TREPR_3308 TREPR_3308 850287 850991 + molecular chaperone%2C DnaJ family identified by match to protein family HMM PF00226 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3308 TREPR_3309 TREPR_3309 TREPR_3309 849443 850282 + conserved hypothetical protein gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3309 TREPR_3310 TREPR_3310 TREPR_3310 849023 849433 + Zn-finger domain protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3310 TREPR_3312 TREPR_3312 TREPR_3312 847700 848608 + transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3312 TREPR_3313 TREPR_3313 TREPR_3313 846465 847625 - 3-methylitaconate isomerase identified by match to protein family HMM PF04303 gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3313 TREPR_3314 TREPR_3314 citD_1 citD_1 846145 846441 - citrate lyase acyl carrier protein identified by match to protein family HMM PF04953%3B match to protein family HMM TIGR01608 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3314 TREPR_3315 TREPR_3315 citE citE 845258 846166 - citrate (pro-3S)-lyase%2C beta subunit identified by match to protein family HMM PF03328%3B match to protein family HMM TIGR01588 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3315 TREPR_3316 TREPR_3316 citF_1 citF_1 843723 845261 - citrate lyase%2C alpha subunit identified by match to protein family HMM PF04223%3B match to protein family HMM TIGR01584 gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3316 TREPR_3317 TREPR_3317 TREPR_3317 841426 843720 - aconitase family protein identified by match to protein family HMM PF00330%3B match to protein family HMM PF00694 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3317 TREPR_3318 TREPR_3318 TREPR_3318 840011 841285 - citrate transporter family protein identified by match to protein family HMM PF00939%3B match to protein family HMM PF03600 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3318 TREPR_3319 TREPR_3319 TREPR_3319 838478 839986 - bacterial capsule synthesis protein identified by match to protein family HMM PF09587 gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3319 TREPR_3320 TREPR_3320 TREPR_3320 837199 838164 + conserved hypothetical protein identified by match to protein family HMM TIGR01784 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3320 TREPR_3321 TREPR_3321 higA_1 higA_1 836374 836676 + addiction module antidote protein%2C HigA family identified by match to protein family HMM PF01381%3B match to protein family HMM TIGR02607 gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3321 TREPR_3322 TREPR_3322 TREPR_3322 836035 836316 + plasmid maintenance system killer protein identified by match to protein family HMM PF05015 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3322 TREPR_3323 TREPR_3323 TREPR_3323 835275 835835 + conserved hypothetical protein gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3323 TREPR_3325 TREPR_3325 TREPR_3325 834320 835138 - glycerophosphodiester phosphodiesterase identified by match to protein family HMM PF03009 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3325 TREPR_3326 TREPR_3326 TREPR_3326 833376 834251 - glycerol-3-phosphate ABC transporter identified by match to protein family HMM PF00528 gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3326 TREPR_3327 TREPR_3327 TREPR_3327 832555 833379 - sugar permease identified by match to protein family HMM PF00528 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3327 TREPR_3328 TREPR_3328 TREPR_3328 831158 832477 - glycerol-3-phosphate ABC transporter substarate-binding protein identified by match to protein family HMM PF01547 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3328 TREPR_3329 TREPR_3329 TREPR_3329 829974 831083 - malate dehydrogenase identified by match to protein family HMM PF02615 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3329 TREPR_3330 TREPR_3330 glpK glpK 828470 829954 - glycerol kinase identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3330 TREPR_3331 TREPR_3331 TREPR_3331 828050 828421 + conserved hypothetical protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3331 TREPR_3332 TREPR_3332 argC argC 826638 827780 - N-acetyl-gamma-glutamyl-phosphate reductase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3332 TREPR_3333 TREPR_3333 argB argB 825729 826619 - acetylglutamate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00761 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3333 TREPR_3334 TREPR_3334 TREPR_3334 824372 825736 - acetylornithine transaminase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00707 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3334 TREPR_3335 TREPR_3335 TREPR_3335 823802 824359 - multimeric flavodoxin WrbA family protein identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358 gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3335 TREPR_3336 TREPR_3336 TREPR_3336 822392 823783 + conserved hypothetical protein identified by match to protein family HMM PF05147 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3336 TREPR_3337 TREPR_3337 TREPR_3337 821623 822381 + L-cystine import ATP-binding protein TcyN identified by match to protein family HMM PF00005 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3337 TREPR_3338 TREPR_3338 TREPR_3338 820916 821626 + ABC-type amino acid transport system%2C permease component identified by match to protein family HMM PF00528 gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3338 TREPR_3339 TREPR_3339 TREPR_3339 820078 820887 + bacterial extracellular solute-binding protein%2C family 3 identified by match to protein family HMM PF00497 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3339 TREPR_3340 TREPR_3340 TREPR_3340 819345 820043 + ABC-type amino acid transport system%2C permease component identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3340 TREPR_3341 TREPR_3341 TREPR_3341 818869 819186 + antibiotic biosynthesis monooxygenase identified by match to protein family HMM PF03992 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3341 TREPR_3342 TREPR_3342 TREPR_3342 817374 818738 + conserved hypothetical protein identified by match to protein family HMM PF05147 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3342 TREPR_3343 TREPR_3343 TREPR_3343 816603 817361 + L-cystine import ATP-binding protein TcyN identified by match to protein family HMM PF00005 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3343 TREPR_3344 TREPR_3344 TREPR_3344 815869 816606 + ABC-type amino acid transport system%2C permease component identified by match to protein family HMM PF00528 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3344 TREPR_3345 TREPR_3345 TREPR_3345 815016 815834 + conserved hypothetical protein gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3345 TREPR_3346 TREPR_3346 TREPR_3346 814269 814967 + ABC-type amino acid transport system%2C permease component identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3346 TREPR_3347 TREPR_3347 TREPR_3347 813513 814133 + ExpA identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3347 TREPR_3348 TREPR_3348 TREPR_3348 812234 813520 + two-component system sensor kinase identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3348 TREPR_3349 TREPR_3349 TREPR_3349 811039 812247 + peptidase%2C M20/M25/M40 family identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3349 TREPR_3350 TREPR_3350 argG argG 809647 810948 - argininosuccinate synthase identified by match to protein family HMM PF00764%3B match to protein family HMM TIGR00032 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3350 TREPR_3351 TREPR_3351 TREPR_3351 809245 809451 + conserved domain protein identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439 gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3351 TREPR_3352 TREPR_3352 TREPR_3352 808071 809087 + putative lipoprotein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3352 TREPR_3353 TREPR_3353 TREPR_3353 807766 808074 + hypothetical protein identified by glimmer%3B putative gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3353 TREPR_3354 TREPR_3354 TREPR_3354 807268 807606 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3354 TREPR_3355 TREPR_3355 TREPR_3355 806886 807143 - hypothetical protein identified by glimmer%3B putative gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3355 TREPR_3356 TREPR_3356 TREPR_3356 806521 806907 - PIN domain protein identified by match to protein family HMM PF01850 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3356 TREPR_3357 TREPR_3357 argH argH 805025 806431 - argininosuccinate lyase identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838 gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3357 TREPR_3358 TREPR_3358 nagB nagB 804131 804922 + glucosamine-6-phosphate deaminase identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR00502 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3358 TREPR_3359 TREPR_3359 nagA nagA 802980 804116 + N-acetylglucosamine-6-phosphate deacetylase identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00221 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3359 TREPR_3360 TREPR_3360 TREPR_3360 801042 802259 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3360 TREPR_3361 TREPR_3361 TREPR_3361 800436 800873 + chemotaxis protein Chey identified by match to protein family HMM PF00072 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3361 TREPR_3362 TREPR_3362 TREPR_3362 799227 800264 - putative dihydrouridine synthase identified by match to protein family HMM PF01207 gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3362 TREPR_3363 TREPR_3363 TREPR_3363 798569 799219 + inner membrane protein CreD identified by match to protein family HMM PF06123 gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3363 TREPR_3364 TREPR_3364 TREPR_3364 798202 798447 + hypothetical protein identified by glimmer%3B putative gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3364 TREPR_3365 TREPR_3365 TREPR_3365 796942 798102 + oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3365 TREPR_3367 TREPR_3367 TREPR_3367 796031 796813 - DNA repair protein RadC identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3367 TREPR_3368 TREPR_3368 TREPR_3368 795689 795931 - hypothetical protein identified by glimmer%3B putative gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3368 TREPR_3369 TREPR_3369 TREPR_3369 794835 795686 - hypothetical protein identified by glimmer%3B putative gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3369 TREPR_3370 TREPR_3370 TREPR_3370 794182 794826 - biopolymer transport protein identified by match to protein family HMM PF01618 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3370 TREPR_3371 TREPR_3371 TREPR_3371 793772 794185 - TolR protein gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3371 TREPR_3372 TREPR_3372 TREPR_3372 793377 793775 - putative biopolymer transport ExbD protein identified by match to protein family HMM PF02472 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3372 TREPR_3373 TREPR_3373 TREPR_3373 792713 793384 - TonB protein identified by match to protein family HMM TIGR01352 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3373 TREPR_3374 TREPR_3374 TREPR_3374 791491 792660 - oxidoreductase domain protein identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3374 TREPR_3375 TREPR_3375 TREPR_3375 790529 791476 + cold shock protein identified by match to protein family HMM PF00313 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3375 TREPR_3376 TREPR_3376 TREPR_3376 789876 790367 + hypothetical protein identified by glimmer%3B putative gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3376 TREPR_3377 TREPR_3377 TREPR_3377 789676 789819 + hypothetical protein identified by glimmer%3B putative gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3377 TREPR_3378 TREPR_3378 TREPR_3378 788439 789641 - OmpA family protein identified by match to protein family HMM PF00691 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3378 TREPR_3379 TREPR_3379 TREPR_3379 788087 788392 + conserved hypothetical protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3379 TREPR_3380 TREPR_3380 TREPR_3380 787773 787889 - hypothetical protein identified by glimmer%3B putative gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3380 TREPR_3381 TREPR_3381 aspS aspS 785892 787748 - aspartate--tRNA ligase identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3381 TREPR_3382 TREPR_3382 chrA chrA 785243 785812 - chromate transport protein identified by match to protein family HMM PF02417%3B overlaps another CDS with the same product name gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3382 TREPR_3383 TREPR_3383 TREPR_3383 784695 785246 - chromate transport protein identified by match to protein family HMM PF02417%3B overlaps another CDS with the same product name gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3383 TREPR_3384 TREPR_3384 TREPR_3384 784361 784609 + hypothetical protein identified by glimmer%3B putative gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3384 TREPR_3387 TREPR_3387 TREPR_3387 782891 784114 - glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3387 TREPR_3388 TREPR_3388 TREPR_3388 781590 782885 + hypothetical protein identified by glimmer%3B putative gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3388 TREPR_3389 TREPR_3389 ilvE ilvE 780483 781568 + branched-chain-amino-acid transaminase identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01123 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3389 TREPR_3390 TREPR_3390 TREPR_3390 778641 780185 - ppic-type ppiase domain protein identified by match to protein family HMM PF00639 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3390 TREPR_3391 TREPR_3391 TREPR_3391 775987 776970 + hypothetical protein identified by glimmer%3B putative gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3391 TREPR_3392 TREPR_3392 TREPR_3392 776967 778637 - conserved hypothetical protein gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3392 TREPR_3393 TREPR_3393 TREPR_3393 775548 775973 + putative lipoprotein gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3393 TREPR_3394 TREPR_3394 TREPR_3394 774327 775523 + putative lipoprotein gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3394 TREPR_3396 TREPR_3396 TREPR_3396 772934 773953 - hypothetical protein identified by glimmer%3B putative gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3396 TREPR_3397 TREPR_3397 TREPR_3397 771777 772859 + hypothetical protein identified by glimmer%3B putative gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3397 TREPR_3398 TREPR_3398 TREPR_3398 767738 771766 + hypothetical protein identified by glimmer%3B putative gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3398 TREPR_3399 TREPR_3399 lepA lepA 765756 767576 + GTP-binding protein LepA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3399 TREPR_3401 TREPR_3401 TREPR_3401 762653 765697 + putative trep gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3401 TREPR_3402 TREPR_3402 TREPR_3402 761943 762581 + cobalamin B12-binding domain protein identified by match to protein family HMM PF02310%3B match to protein family HMM PF02607 gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3402 TREPR_3403 TREPR_3403 TREPR_3403 760303 761916 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3403 TREPR_3404 TREPR_3404 TREPR_3404 758820 760298 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3404 TREPR_3405 TREPR_3405 TREPR_3405 756145 758619 + putative transcriptional regulator identified by match to protein family HMM PF00196 gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3405 TREPR_3406 TREPR_3406 TREPR_3406 753509 756088 + transcriptional regulator%2C LuxR family protein identified by match to protein family HMM PF00196 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3406 TREPR_3408 TREPR_3408 TREPR_3408 751574 752755 + hypothetical protein identified by glimmer%3B putative gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3408 TREPR_3409 TREPR_3409 TREPR_3409 752752 753087 - methylated-DNA--[protein]-cysteine S-methyltransferase identified by match to protein family HMM PF01035 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3409 TREPR_3410 TREPR_3410 TREPR_3410 748513 751584 + conserved hypothetical protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3410 TREPR_3411 TREPR_3411 TREPR_3411 746631 748520 + adenylate cyclase identified by match to protein family HMM PF00211%3B match to protein family HMM PF00672 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3411 TREPR_3412 TREPR_3412 TREPR_3412 743514 746525 + sperm-activating peptides family gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3412 TREPR_3413 TREPR_3413 TREPR_3413 739603 743517 + conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3413 TREPR_3414 TREPR_3414 TREPR_3414 738321 739589 + hypothetical protein identified by glimmer%3B putative gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3414 TREPR_3415 TREPR_3415 TREPR_3415 737246 738193 + conserved hypothetical protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3415 TREPR_3416 TREPR_3416 deoC deoC 736398 737135 - deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3416 TREPR_3417 TREPR_3417 TREPR_3417 735849 736199 - toxin HigB-2 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3417 TREPR_3418 TREPR_3418 TREPR_3418 735517 735852 - putative transcriptional regulator gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3418 TREPR_3419 TREPR_3419 TREPR_3419 734931 735464 + ketoisovalerate oxidoreductase subunit VorA (VOR) (2-oxoisovalerate oxidoreductase alpha chain) (2-oxoisovalerateferredoxin reductase subunit alpha) identified by match to protein family HMM PF01558 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3419 TREPR_3420 TREPR_3420 TREPR_3420 734152 734931 + 2-oxoglutarate oxidoreductase%2C beta subunit identified by match to protein family HMM PF02775 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3420 TREPR_3421 TREPR_3421 vorB vorB 733025 734155 + 2-oxoglutarate oxidoreductase%2C alpha subunit identified by match to protein family HMM PF01855%3B match to protein family HMM PF02780 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3421 TREPR_3422 TREPR_3422 TREPR_3422 732798 733028 + conserved domain protein identified by match to protein family HMM PF00037 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3422 TREPR_3423 TREPR_3423 TREPR_3423 732311 732784 + hypothetical protein identified by glimmer%3B putative gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3423 TREPR_3424 TREPR_3424 rpoE rpoE 731754 732314 + RNA polymerase sigma-E factor identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3424 TREPR_3425 TREPR_3425 TREPR_3425 731422 731757 + conserved hypothetical protein gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3425 TREPR_3426 TREPR_3426 TREPR_3426 730323 731312 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3426 TREPR_3427 TREPR_3427 TREPR_3427 729873 730307 + PIN domain protein identified by match to protein family HMM PF01850 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3427 TREPR_3428 TREPR_3428 TREPR_3428 729607 729867 + putative prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3428 TREPR_3429 TREPR_3429 TREPR_3429 728520 729053 - conserved hypothetical protein gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3429 TREPR_3430 TREPR_3430 TREPR_3430 727450 728355 + response regulator receiver modulated diguanylate cyclase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3430 TREPR_3431 TREPR_3431 TREPR_3431 726730 727269 + hypothetical protein identified by glimmer%3B putative gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3431 TREPR_3432 TREPR_3432 apt apt 726072 726605 - adenine phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090 gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3432 TREPR_3433 TREPR_3433 TREPR_3433 725162 725893 - pirin domain protein identified by match to protein family HMM PF02678 gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3433 TREPR_3434 TREPR_3434 TREPR_3434 724640 725137 + NlpC (ORF-17) identified by match to protein family HMM PF00877 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3434 TREPR_3436 TREPR_3436 TREPR_3436 723789 723938 - hypothetical protein identified by glimmer%3B putative gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3436 TREPR_3438 TREPR_3438 TREPR_3438 722917 723480 - conserved hypothetical protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3438 TREPR_3439 TREPR_3439 TREPR_3439 722504 722917 - conserved hypothetical protein gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3439 TREPR_3441 TREPR_3441 TREPR_3441 720203 721933 - hypothetical protein identified by glimmer%3B putative gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3441 TREPR_3442 TREPR_3442 TREPR_3442 719436 720206 - conserved hypothetical protein identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3442 TREPR_3443 TREPR_3443 argS argS 717595 719424 - arginine--tRNA ligase identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3443 TREPR_3444 TREPR_3444 TREPR_3444 716229 717587 + MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3444 TREPR_3445 TREPR_3445 TREPR_3445 715477 716232 + acyltransferase domain protein identified by match to protein family HMM PF01553 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3445 TREPR_3446 TREPR_3446 TREPR_3446 714305 715453 + glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3446 TREPR_3448 TREPR_3448 rplU rplU 713644 713976 - ribosomal protein L21 identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3448 TREPR_3449 TREPR_3449 TREPR_3449 713297 713638 - conserved hypothetical protein identified by match to protein family HMM PF04327 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3449 TREPR_3450 TREPR_3450 rpmA rpmA 713011 713295 - ribosomal protein L27 identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3450 TREPR_3451 TREPR_3451 cgtA cgtA 711861 712910 - Obg family GTPase CgtA identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR02729 gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3451 TREPR_3452 TREPR_3452 TREPR_3452 710688 711857 - nicotinate identified by match to protein family HMM PF01467%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482%3B match to protein family HMM TIGR00488 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3452 TREPR_3453 TREPR_3453 TREPR_3453 709471 710691 - conserved hypothetical protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3453 TREPR_3454 TREPR_3454 TREPR_3454 709137 709496 - iojap family protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3454 TREPR_3455 TREPR_3455 TREPR_3455 708812 709105 + hypothetical protein identified by glimmer%3B putative gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3455 TREPR_3458 TREPR_3458 putP putP 706161 707738 - sodium/proline symporter identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02121 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3458 TREPR_3459 TREPR_3459 TREPR_3459 705393 706082 - hypothetical protein identified by glimmer%3B putative gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3459 TREPR_3460 TREPR_3460 TREPR_3460 704193 705353 - aldo/keto reductase identified by match to protein family HMM PF00037%3B match to protein family HMM PF00248 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3460 TREPR_3461 TREPR_3461 TREPR_3461 703844 704167 - DNA polymerase%2C beta domain protein region identified by match to protein family HMM PF01909 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3461 TREPR_3462 TREPR_3462 TREPR_3462 703411 703854 - hepn domain protein identified by match to protein family HMM PF05168 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3462 TREPR_3463 TREPR_3463 TREPR_3463 702582 703439 - modification methylase lladchia (adenine-specificmethyltransferase lladchia) (m.lladchia) (m.lladchi a) (m.llaii a) identified by match to protein family HMM PF02086%3B match to protein family HMM TIGR00571 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3463 TREPR_3465 TREPR_3465 hcp hcp 700784 702349 - hydroxylamine reductase identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01703 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3465 TREPR_3466 TREPR_3466 gltB gltB 695471 700210 - glutamate synthase%2C large subunit identified by match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3466 TREPR_3467 TREPR_3467 TREPR_3467 693867 695330 - glutamate synthase [NADH] (nadh-gogat) identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01317 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3467 TREPR_3468 TREPR_3468 mviN mviN 692149 693768 - integral membrane protein MviN identified by match to protein family HMM PF01554%3B match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3468 TREPR_3469 TREPR_3469 tyrS tyrS 690794 692044 + tyrosine--tRNA ligase identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00234 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3469 TREPR_3470 TREPR_3470 TREPR_3470 690426 690602 - conserved hypothetical protein gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3470 TREPR_3471 TREPR_3471 TREPR_3471 690256 690429 - conserved domain protein identified by match to protein family HMM PF07927 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3471 TREPR_3472 TREPR_3472 TREPR_3472 687869 690157 + hypothetical protein identified by glimmer%3B putative gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3472 TREPR_3473 TREPR_3473 TREPR_3473 686215 687849 + putative cell wall/surface repeat protein gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3473 TREPR_3474 TREPR_3474 TREPR_3474 685937 686149 + hypothetical protein identified by glimmer%3B putative gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3474 TREPR_3475 TREPR_3475 TREPR_3475 685480 685842 - transcriptional regulator identified by match to protein family HMM PF01381 gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3475 TREPR_3476 TREPR_3476 TREPR_3476 685197 685454 + conserved hypothetical protein gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3476 TREPR_3477 TREPR_3477 TREPR_3477 684899 685195 + conserved hypothetical protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3477 TREPR_3479 TREPR_3479 flgF flgF 683881 684732 - flagellar basal-body rod protein FlgF identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02490%3B match to protein family HMM TIGR03506 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3479 TREPR_3480 TREPR_3480 flgG flgG 683068 683865 - flagellar basal-body rod protein FlgG identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02488%3B match to protein family HMM TIGR03506 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3480 TREPR_3481 TREPR_3481 TREPR_3481 682543 683055 - putative flagellar protein gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3481 TREPR_3482 TREPR_3482 TREPR_3482 681817 682491 + caax amino protease family identified by match to protein family HMM PF02517 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3482 TREPR_3483 TREPR_3483 TREPR_3483 680639 681685 - type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3483 TREPR_3484 TREPR_3484 TREPR_3484 679034 680590 - putative ComE protein identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3484 TREPR_3485 TREPR_3485 ksgA ksgA 678112 679050 - dimethyladenosine transferase identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3485 TREPR_3486 TREPR_3486 TREPR_3486 677439 678134 - pyridoxal phosphate enzyme%2C YggS family identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3486 TREPR_3487 TREPR_3487 TREPR_3487 676912 677442 - conserved hypothetical protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3487 TREPR_3488 TREPR_3488 rluD_1 rluD_1 675953 676912 - ribosomal large subunit pseudouridine synthase D identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00005 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3488 TREPR_3489 TREPR_3489 TREPR_3489 674575 675885 - putative ATPase identified by match to protein family HMM PF01637%3B match to protein family HMM PF03008 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3489 TREPR_3490 TREPR_3490 TREPR_3490 672799 674508 + phosphoribulokinase/uridine kinase family protein identified by match to protein family HMM PF00485 gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3490 TREPR_3491 TREPR_3491 TREPR_3491 671349 672797 + putative nicotinate phosphoribosyltransferase identified by match to protein family HMM PF04095%3B match to protein family HMM TIGR01513 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3491 TREPR_3492 TREPR_3492 TREPR_3492 670612 671352 + pyrazinamidase/nicotinamidase (PZAase)(Nicotine deamidase) (NAMase) identified by match to protein family HMM PF00857 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3492 TREPR_3493 TREPR_3493 TREPR_3493 669717 670625 - putative membrane protein identified by match to protein family HMM PF00892 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3493 TREPR_3494 TREPR_3494 pyrF pyrF 668754 669677 + orotidine 5'-phosphate decarboxylase identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR02127 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3494 TREPR_3496 TREPR_3496 TREPR_3496 667972 668526 - putative lipoprotein gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3496 TREPR_3497 TREPR_3497 TREPR_3497 667350 667940 - hypothetical protein identified by glimmer%3B putative gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3497 TREPR_3498 TREPR_3498 TREPR_3498 666368 667273 + dihydroorotate dehydrogenase%2C catalytic subunit (dihydroorotate oxidase) (dhodehase) (dhodase) (dhod) identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01037 gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3498 TREPR_3499 TREPR_3499 TREPR_3499 665529 666371 + dihydroorotate dehydrogenase%2C electron transfer subunit identified by match to protein family HMM PF00175 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3499 TREPR_3500 TREPR_3500 TREPR_3500 664230 665525 + dihydroorotase (DHOase) identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00857 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3500 TREPR_3501 TREPR_3501 TREPR_3501 663753 664187 + aspartate carbamoyltransferase%2C regulatory subunit identified by match to protein family HMM PF01948 gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3501 TREPR_3502 TREPR_3502 pyrB pyrB 662828 663751 + aspartate carbamoyltransferase identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670 gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3502 TREPR_3503 TREPR_3503 TREPR_3503 662654 662770 + putative lipoprotein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3503 TREPR_3504 TREPR_3504 TREPR_3504 659551 662514 - hybrid sensory kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3504 TREPR_3505 TREPR_3505 TREPR_3505 658473 659561 - response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3505 TREPR_3506 TREPR_3506 TREPR_3506 657572 658312 - methionine import ATP-binding protein MetN identified by match to protein family HMM PF00005 gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3506 TREPR_3507 TREPR_3507 TREPR_3507 656917 657585 - D-methionine transport system permease protein MetI identified by match to protein family HMM PF00528 gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3507 TREPR_3508 TREPR_3508 trxA trxA 656499 656822 - thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3508 TREPR_3509 TREPR_3509 TREPR_3509 655418 656443 + putative lipoprotein gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3509 TREPR_3510 TREPR_3510 TREPR_3510 654649 655356 + conserved hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3510 TREPR_3511 TREPR_3511 nifA_1 nifA_1 652707 654314 - Nif-specific regulatory protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3511 TREPR_3512 TREPR_3512 amt amt 651114 652475 - ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3512 TREPR_3513 TREPR_3513 TREPR_3513 650761 651102 - nitrogen regulatory protein P-II identified by match to protein family HMM PF00543 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3513 TREPR_3514 TREPR_3514 TREPR_3514 650425 650658 + hypothetical protein identified by glimmer%3B putative gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3514 TREPR_3515 TREPR_3515 TREPR_3515 649904 650362 + conserved hypothetical protein gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3515 TREPR_3516 TREPR_3516 TREPR_3516 649678 649911 + conserved hypothetical protein identified by match to protein family HMM PF03683 gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3516 TREPR_3517 TREPR_3517 TREPR_3517 649443 649613 - HicB identified by match to protein family HMM PF05534 gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3517 TREPR_3518 TREPR_3518 TREPR_3518 648537 649157 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3518 TREPR_3519 TREPR_3519 TREPR_3519 648086 648466 - hypothetical protein identified by glimmer%3B putative gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3519 TREPR_3520 TREPR_3520 TREPR_3520 645813 648089 - putative cell wall/surface repeat protein identified by match to protein family HMM PF02012 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3520 TREPR_3521 TREPR_3521 TREPR_3521 645607 645801 - hypothetical protein identified by glimmer%3B putative gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3521 TREPR_3522 TREPR_3522 TREPR_3522 644883 645503 + hypothetical protein identified by glimmer%3B putative gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3522 TREPR_3523 TREPR_3523 TREPR_3523 643589 644818 - multi-sensor signal transduction histidine kinase identified by match to protein family HMM PF02518%3B match to protein family HMM PF07730 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3523 TREPR_3525 TREPR_3525 TREPR_3525 641148 643292 - glutamine synthetase (Glutamate--ammonia ligase) (GS) identified by match to protein family HMM PF00120 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3525 TREPR_3527 TREPR_3527 TREPR_3527 640086 640946 - deoxyribonuclease%2C TatD family identified by match to protein family HMM PF01026 gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3527 TREPR_3528 TREPR_3528 TREPR_3528 639716 639943 - hypothetical protein identified by glimmer%3B putative gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3528 TREPR_3529 TREPR_3529 TREPR_3529 639012 639641 - hypothetical protein identified by glimmer%3B putative gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3529 TREPR_3530 TREPR_3530 TREPR_3530 637013 638968 - putative 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3530 TREPR_3531 TREPR_3531 TREPR_3531 635847 636929 - basic membrane lipoprotein identified by match to protein family HMM PF02608 gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3531 TREPR_3532 TREPR_3532 TREPR_3532 634138 635718 - ribose import ATP-binding protein RbsA identified by match to protein family HMM PF00005 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3532 TREPR_3533 TREPR_3533 TREPR_3533 633015 634151 - inner-membrane translocator identified by match to protein family HMM PF02653%3B overlaps another CDS with the same product name gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3533 TREPR_3534 TREPR_3534 TREPR_3534 632074 633018 - inner-membrane translocator identified by match to protein family HMM PF02653%3B overlaps another CDS with the same product name gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3534 TREPR_3535 TREPR_3535 TREPR_3535 631642 632055 + drug/metabolite transporter%2C DMT family identified by match to protein family HMM PF00892 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3535 TREPR_3536 TREPR_3536 TREPR_3536 631219 631452 - conserved hypothetical protein gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3536 TREPR_3537 TREPR_3537 TREPR_3537 629131 631215 - heavy metal translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01525 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3537 TREPR_3538 TREPR_3538 TREPR_3538 627672 628895 + conserved hypothetical protein gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3538 TREPR_3539 TREPR_3539 TREPR_3539 628867 629118 - heavy metal translocating P-type ATPase gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3539 TREPR_3540 TREPR_3540 TREPR_3540 626175 627572 + conserved hypothetical protein gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3540 TREPR_3541 TREPR_3541 nifH_1 nifH_1 625411 626178 + nitrogenase iron protein identified by match to protein family HMM PF00142 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3541 TREPR_3542 TREPR_3542 TREPR_3542 624245 625225 - probable peptide ABC transporter permease protein y4tP identified by match to protein family HMM PF00528 gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3542 TREPR_3543 TREPR_3543 TREPR_3543 621618 624248 - glutathione import ATP-binding protein GsiA identified by match to protein family HMM PF00005%3B match to protein family HMM PF00528 gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3543 TREPR_3544 TREPR_3544 TREPR_3544 619801 621621 - high-affinity nickel-transporter gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3544 TREPR_3545 TREPR_3545 TREPR_3545 619014 619784 - carbon monoxide dehydrogenase accessory protein CooC identified by match to protein family HMM PF01656 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3545 TREPR_3546 TREPR_3546 TREPR_3546 617322 618968 - putative extracellular solute-binding protein%2C family 5 identified by match to protein family HMM PF00496 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3546 TREPR_3547 TREPR_3547 TREPR_3547 616399 617298 + conserved hypothetical protein gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3547 TREPR_3548 TREPR_3548 TREPR_3548 615756 616307 + conserved hypothetical protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3548 TREPR_3549 TREPR_3549 TREPR_3549 615404 615691 + hypothetical protein identified by glimmer%3B putative gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3549 TREPR_3550 TREPR_3550 TREPR_3550 614586 615413 + hypothetical protein identified by glimmer%3B putative gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3550 TREPR_3551 TREPR_3551 TREPR_3551 613376 614479 - 6-phosphofructokinase identified by match to protein family HMM PF00365 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3551 TREPR_3552 TREPR_3552 TREPR_3552 612507 613373 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3552 TREPR_3553 TREPR_3553 TREPR_3553 612428 612544 - hypothetical protein identified by glimmer%3B putative gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3553 TREPR_3554 TREPR_3554 TREPR_3554 611674 612444 - DbpA RNA binding domain protein identified by match to protein family HMM PF03880 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3554 TREPR_3556 TREPR_3556 TREPR_3556 610195 610395 - hypothetical protein identified by glimmer%3B putative gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3556 TREPR_3558 TREPR_3558 TREPR_3558 609833 610060 - conserved hypothetical protein gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3558 TREPR_3559 TREPR_3559 TREPR_3559 609564 609770 + putative helix-turn-helix protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3559 TREPR_3560 TREPR_3560 TREPR_3560 609199 609567 + conserved hypothetical protein identified by match to protein family HMM PF06296 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3560 TREPR_3561 TREPR_3561 TREPR_3561 607682 608851 + hypothetical protein identified by glimmer%3B putative gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3561 TREPR_3562 TREPR_3562 TREPR_3562 606945 607592 - hydrolase identified by match to protein family HMM PF00753 gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3562 TREPR_3563 TREPR_3563 TREPR_3563 605230 606906 + putative conserved hypothetical integral membrane protein identified by match to protein family HMM PF02690%3B match to protein family HMM TIGR00704 gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3563 TREPR_3564 TREPR_3564 TREPR_3564 603721 605130 + sodium:alanine symporter family protein identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3564 TREPR_3565 TREPR_3565 ald ald 602581 603696 + alanine dehydrogenase identified by match to protein family HMM PF01262%3B match to protein family HMM PF02826%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00518 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3565 TREPR_3566 TREPR_3566 TREPR_3566 601871 602344 - transcriptional regulator%2C AsnC family identified by match to protein family HMM PF01037 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3566 TREPR_3567 TREPR_3567 TREPR_3567 600966 601844 + putative transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3567 TREPR_3568 TREPR_3568 TREPR_3568 599770 600852 - putative veratrol:corrinoid protein metyltransferase gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3568 TREPR_3569 TREPR_3569 TREPR_3569 598155 599636 - putative 5'-Nucleotidase domain protein identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3569 TREPR_3570 TREPR_3570 TREPR_3570 596696 598060 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3570 TREPR_3571 TREPR_3571 TREPR_3571 595680 596672 - vanillate:corrinoid protein methyltransferase gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3571 TREPR_3572 TREPR_3572 TREPR_3572 594124 595506 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3572 TREPR_3573 TREPR_3573 TREPR_3573 593916 594116 - nitroreductase gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3573 TREPR_3574 TREPR_3574 TREPR_3574 592619 593836 + ATPase gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3574 TREPR_3575 TREPR_3575 TREPR_3575 591126 592427 - putative lipoprotein gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3575 TREPR_3576 TREPR_3576 trpS trpS 590018 591016 - tryptophan--tRNA ligase identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3576 TREPR_3577 TREPR_3577 TREPR_3577 588727 589947 - conserved hypothetical protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3577 TREPR_3578 TREPR_3578 TREPR_3578 587382 588611 - conserved hypothetical protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3578 TREPR_3579 TREPR_3579 rbsA rbsA 585722 587314 - ABC transporter%2C carbohydrate uptake transporter-2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3579 TREPR_3580 TREPR_3580 TREPR_3580 584643 585725 - ABC transporter integral membrane protein identified by match to protein family HMM PF02653 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3580 TREPR_3581 TREPR_3581 TREPR_3581 583498 584646 - ABC transporter integral membrane protein identified by match to protein family HMM PF02653 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3581 TREPR_3582 TREPR_3582 TREPR_3582 583048 583494 - hypothetical protein identified by glimmer%3B putative gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3582 TREPR_3584 TREPR_3584 TREPR_3584 582514 582909 + conserved hypothetical protein identified by match to protein family HMM TIGR00305 gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3584 TREPR_3585 TREPR_3585 TREPR_3585 582247 582501 + putative transcriptional regulator identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439 gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3585 TREPR_3587 TREPR_3587 TREPR_3587 577812 581858 + putative extracellular nuclease identified by match to protein family HMM PF02415%3B match to protein family HMM PF09479%3B match to protein family HMM TIGR01376 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3587 TREPR_3588 TREPR_3588 TREPR_3588 577679 577792 - hypothetical protein identified by glimmer%3B putative gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3588 TREPR_3589 TREPR_3589 TREPR_3589 576725 577396 + two-component response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3589 TREPR_3591 TREPR_3591 TREPR_3591 573698 576460 - adenylate/guanylate cyclase catalytic domain protein identified by match to protein family HMM PF00211%3B match to protein family HMM PF05226 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3591 TREPR_3592 TREPR_3592 TREPR_3592 573275 573685 + hypothetical protein%3B this region contains one or more premature stops and/or frameshifts%3Bidentified by glimmer%3B putative pseudogene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3592 TREPR_3593 TREPR_3593 TREPR_3593 572622 573152 - peptidyl-prolyl cis-trans isomerase%2C fkbp-type identified by match to protein family HMM PF00254 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3593 TREPR_3594 TREPR_3594 TREPR_3594 570760 572505 + iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI) identified by match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM PF02256%3B match to protein family HMM PF02906%3B match to protein family HMM TIGR02512 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3594 TREPR_3595 TREPR_3595 TREPR_3595 568876 570750 + NADH dehydrogenase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3595 TREPR_3596 TREPR_3596 TREPR_3596 568364 568867 + NADH dehydrogenase subunit E identified by match to protein family HMM PF01257 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3596 TREPR_3597 TREPR_3597 TREPR_3597 567462 568142 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3597 TREPR_3598 TREPR_3598 TREPR_3598 566389 567135 - conserved hypothetical protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3598 TREPR_3599 TREPR_3599 TREPR_3599 565364 566344 + fructokinase identified by match to protein family HMM PF00294 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3599 TREPR_3600 TREPR_3600 TREPR_3600 564464 565348 + serine acetyltransferase%2C plasmid (SAT) identified by match to protein family HMM PF00132 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3600 TREPR_3601 TREPR_3601 TREPR_3601 563530 564450 + patatin family protein identified by match to protein family HMM PF01734 gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3601 TREPR_3602 TREPR_3602 TREPR_3602 562351 563400 - L-threonine 3-dehydrogenase identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3602 TREPR_3603 TREPR_3603 cobB_1 cobB_1 560901 562280 + cobyrinic Acid a%2Cc-diamide synthase identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00379 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3603 TREPR_3604 TREPR_3604 TREPR_3604 556233 560792 + activator of 2-hydroxyglutaryl-CoA dehydratase identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3604 TREPR_3605 TREPR_3605 TREPR_3605 555528 555956 - ferric uptake regulator%2C Fur family identified by match to protein family HMM PF01475 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3605 TREPR_3606 TREPR_3606 TREPR_3606 554783 555328 - rubredoxin/rubrerythrin identified by match to protein family HMM PF00301%3B match to protein family HMM PF02915 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3606 TREPR_3607 TREPR_3607 TREPR_3607 554021 554575 - nitroreductase identified by match to protein family HMM PF00881 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3607 TREPR_3610 TREPR_3610 TREPR_3610 551940 553481 - putative polymorphic outer membrane protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3610 TREPR_3611 TREPR_3611 TREPR_3611 551786 551935 - hypothetical protein identified by glimmer%3B putative gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3611 TREPR_3612 TREPR_3612 TREPR_3612 549930 551678 - RNA polymerase sigma factor RpoD (Sigma-70) identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3612 TREPR_3613 TREPR_3613 TREPR_3613 546727 549894 + putative acriflavin resistance protein identified by match to protein family HMM PF00873 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3613 TREPR_3614 TREPR_3614 TREPR_3614 545599 546717 + putative membrane fusion protein identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR01730 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3614 TREPR_3615 TREPR_3615 TREPR_3615 544265 545602 + outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3615 TREPR_3616 TREPR_3616 TREPR_3616 542751 543791 - HmuU protein identified by match to protein family HMM PF01032 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3616 TREPR_3617 TREPR_3617 TREPR_3617 541973 542749 - hemin import ATP-binding protein HmuV identified by match to protein family HMM PF00005 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3617 TREPR_3618 TREPR_3618 TREPR_3618 540786 541907 - periplasmic binding protein identified by match to protein family HMM PF01497 gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3618 TREPR_3619 TREPR_3619 TREPR_3619 539986 540360 - TfoX domain protein identified by match to protein family HMM PF04993 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3619 TREPR_3620 TREPR_3620 TREPR_3620 539625 539942 - carboxymuconolactone decarboxylase identified by match to protein family HMM PF02627 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3620 TREPR_3621 TREPR_3621 TREPR_3621 539337 539549 + transposase%2C mutator family gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3621 TREPR_3622 TREPR_3622 TREPR_3622 539522 539641 - hypothetical protein identified by glimmer%3B putative gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3622 TREPR_3623 TREPR_3623 TREPR_3623 538143 539135 + DNA polymerase III PolC-type (PolIII) identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR00573 gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3623 TREPR_3628 TREPR_3628 TREPR_3628 536985 537122 + hypothetical protein identified by glimmer%3B putative gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3628 TREPR_3629 TREPR_3629 TREPR_3629 534411 536969 - type III restriction enzyme%2C res subunit identified by match to protein family HMM PF00270%3B match to protein family HMM PF04313%3B match to protein family HMM PF04851 gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3629 TREPR_3630 TREPR_3630 TREPR_3630 531969 534398 - N-6 DNA methylase identified by match to protein family HMM PF01420%3B match to protein family HMM PF02384 gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3630 TREPR_3631 TREPR_3631 TREPR_3631 531804 531962 - hypothetical protein identified by glimmer%3B putative gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3631 TREPR_3632 TREPR_3632 TREPR_3632 531029 531781 - hypothetical protein identified by glimmer%3B putative gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3632 TREPR_3633 TREPR_3633 TREPR_3633 530690 530941 - conserved hypothetical protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3633 TREPR_3634 TREPR_3634 TREPR_3634 530430 530678 - conserved hypothetical protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3634 TREPR_3635 TREPR_3635 TREPR_3635 528791 530404 - putative transcriptional regulator gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3635 TREPR_3636 TREPR_3636 TREPR_3636 528051 528431 - aspartyl/glutamyl-tRNA gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3636 TREPR_3637 TREPR_3637 TREPR_3637 526484 528001 - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase%2C A subunit identified by match to protein family HMM PF01425 gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3637 TREPR_3638 TREPR_3638 TREPR_3638 524970 526481 - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase%2C B subunit identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3638 TREPR_3639 TREPR_3639 TREPR_3639 523552 524862 - aspartyl-tRNA synthetase (Aspartate--tRNA ligase)(AspRS) identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336 gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3639 TREPR_3640 TREPR_3640 TREPR_3640 522474 523463 + transporter gate domain protein identified by match to protein family HMM PF07670 gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3640 TREPR_3641 TREPR_3641 TREPR_3641 520964 522340 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3641 TREPR_3642 TREPR_3642 TREPR_3642 518751 520967 - conserved hypothetical protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3642 TREPR_3643 TREPR_3643 TREPR_3643 518282 518674 + transcriptional regulator identified by match to protein family HMM PF01381 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3643 TREPR_3644 TREPR_3644 TREPR_3644 517853 518134 - hypothetical protein identified by glimmer%3B putative gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3644 TREPR_3645 TREPR_3645 TREPR_3645 517388 517780 - hypothetical protein identified by glimmer%3B putative gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3645 TREPR_3646 TREPR_3646 TREPR_3646 516799 517347 - hypothetical protein identified by glimmer%3B putative gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3646 TREPR_3647 TREPR_3647 TREPR_3647 516099 516812 - hypothetical protein identified by glimmer%3B putative gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3647 TREPR_3648 TREPR_3648 TREPR_3648 514703 516055 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3648 TREPR_3649 TREPR_3649 TREPR_3649 514091 514582 - hypothetical protein identified by glimmer%3B putative gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3649 TREPR_3651 TREPR_3651 TREPR_3651 512685 513809 + diacylglycerol kinase identified by match to protein family HMM PF00781 gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3651 TREPR_3652 TREPR_3652 TREPR_3652 511976 512653 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3652 TREPR_3653 TREPR_3653 TREPR_3653 510514 511989 + carhohydrate kinase%2C fggy family identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3653 TREPR_3654 TREPR_3654 TREPR_3654 509277 510509 + phosphoribosylpyrophosphate synthetase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3654 TREPR_3655 TREPR_3655 TREPR_3655 508029 509249 + OmpA family protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF00691 pseudogene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3655 TREPR_3656 TREPR_3656 TREPR_3656 506312 507787 - ATPase gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3656 TREPR_3657 TREPR_3657 TREPR_3657 505204 506205 + putative lipoprotein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3657 TREPR_3658 TREPR_3658 TREPR_3658 504668 504820 - hypothetical protein identified by glimmer%3B putative gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3658 TREPR_3661 TREPR_3661 TREPR_3661 503390 504331 - oligopeptide transport system permease protein OppB identified by match to protein family HMM PF00528 gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3661 TREPR_3662 TREPR_3662 TREPR_3662 502365 503390 - oligopeptide transport system permease protein OppC identified by match to protein family HMM PF00528 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3662 TREPR_3663 TREPR_3663 TREPR_3663 501243 502355 - oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3663 TREPR_3664 TREPR_3664 TREPR_3664 500287 501246 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3664 TREPR_3665 TREPR_3665 TREPR_3665 498675 500180 + CotH protein identified by match to protein family HMM PF08757 gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3665 TREPR_3666 TREPR_3666 TREPR_3666 498068 498187 + hypothetical protein identified by glimmer%3B putative gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3666 TREPR_3667 TREPR_3667 TREPR_3667 496355 498007 - periplasmic murein peptide-binding protein identified by match to protein family HMM PF00496 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3667 TREPR_3668 TREPR_3668 TREPR_3668 495257 496297 + radical SAM identified by match to protein family HMM PF04055 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3668 TREPR_3669 TREPR_3669 TREPR_3669 493703 495142 + ThiH protein identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3669 TREPR_3670 TREPR_3670 TREPR_3670 493346 493609 + conserved hypothetical protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3670 TREPR_3672 TREPR_3672 mgtE mgtE 491679 493022 + magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3672 TREPR_3673 TREPR_3673 aspA aspA 489995 491398 + aspartate ammonia-lyase identified by match to protein family HMM PF00206 gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3673 TREPR_3674 TREPR_3674 TREPR_3674 488769 489998 + small GTP-binding protein identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3674 TREPR_3675 TREPR_3675 TREPR_3675 487699 488451 - putative lipoprotein gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3675 TREPR_3676 TREPR_3676 TREPR_3676 486945 487496 - isochorismatase family protein identified by match to protein family HMM PF00857 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3676 TREPR_3677 TREPR_3677 TREPR_3677 486748 486936 + transcriptional regulator%2C MerR family%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3677 TREPR_3678 TREPR_3678 TREPR_3678 486086 486475 - carboxymuconolactone decarboxylase identified by match to protein family HMM PF02627 gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3678 TREPR_3679 TREPR_3679 TREPR_3679 485688 486023 - serine/threonine-protein kinase gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3679 TREPR_3680 TREPR_3680 TREPR_3680 484486 485352 - conserved hypothetical protein gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3680 TREPR_3682 TREPR_3682 TREPR_3682 483575 483973 - PIN domain protein identified by match to protein family HMM PF01850 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3682 TREPR_3683 TREPR_3683 TREPR_3683 483206 483358 - conserved hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3683 TREPR_3684 TREPR_3684 TREPR_3684 482870 483079 - conserved hypothetical protein gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3684 TREPR_3685 TREPR_3685 TREPR_3685 482215 482745 - DnaJ domain protein identified by match to protein family HMM PF00226 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3685 TREPR_3686 TREPR_3686 TREPR_3686 481547 482122 - hypothetical protein identified by glimmer%3B putative gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3686 TREPR_3687 TREPR_3687 TREPR_3687 480676 481296 - transposase%2C Mutator family%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by match to protein family HMM PF00872 pseudogene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3687 TREPR_3689 TREPR_3689 TREPR_3689 480115 480483 - transposase TpnA2%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3689 TREPR_3690 TREPR_3690 TREPR_3690 479895 480053 - hypothetical protein identified by glimmer%3B putative gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3690 TREPR_3691 TREPR_3691 TREPR_3691 479269 479895 - putative peptidase%2C S24 family identified by match to protein family HMM PF00717 gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3691 TREPR_3692 TREPR_3692 TREPR_3692 477190 479208 - N-6 DNA methylase identified by match to protein family HMM PF02384%3B match to protein family HMM PF04313 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3692 TREPR_3693 TREPR_3693 TREPR_3693 475781 477193 - dna methylase-type I restriction-modification system gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3693 TREPR_3694 TREPR_3694 TREPR_3694 475654 475788 - hypothetical protein identified by glimmer%3B putative gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3694 TREPR_3695 TREPR_3695 TREPR_3695 475047 475652 - ATPase of the AAA+ class%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3695 TREPR_3696 TREPR_3696 TREPR_3696 474690 475037 - ATPase of the AAA+ class%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3696 TREPR_3697 TREPR_3697 TREPR_3697 474155 474688 - conserved hypothetical protein%3B this gene contains a premature stop which may be the result of a sequencing error pseudogene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3697 TREPR_3698 TREPR_3698 TREPR_3698 472199 473974 - Y4bN protein gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3698 TREPR_3700 TREPR_3700 TREPR_3700 471235 472050 - deoxyribonuclease TatD (DNase tatD) identified by match to protein family HMM PF01026 gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3700 TREPR_3702 TREPR_3702 TREPR_3702 469750 470676 - hypothetical protein identified by glimmer%3B putative gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3702 TREPR_3703 TREPR_3703 TREPR_3703 469531 469746 - putative NADH-ubiquinone oxidoreductase chain 6 (nadhdehydrogenase subunit 6)%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3703 TREPR_3704 TREPR_3704 TREPR_3704 467970 469439 + possible maltodextrin glucosidase identified by match to protein family HMM PF00128 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3704 TREPR_3706 TREPR_3706 TREPR_3706 467379 467957 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3706 TREPR_3707 TREPR_3707 TREPR_3707 466703 467272 - putative membrane protein gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3707 TREPR_3708 TREPR_3708 TREPR_3708 465814 466071 + conserved hypothetical protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3708 TREPR_3709 TREPR_3709 TREPR_3709 466068 466625 - iron-sulfur flavoprotein identified by match to protein family HMM PF02525 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3709 TREPR_3711 TREPR_3711 TREPR_3711 464351 465718 - radical SAM domain protein identified by match to protein family HMM PF00633%3B match to protein family HMM PF04055 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3711 TREPR_3712 TREPR_3712 TREPR_3712 462994 464214 - Xaa-Pro aminopeptidase identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3712 TREPR_3713 TREPR_3713 TREPR_3713 461963 462865 - cysteine synthase B (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) (CSase B) identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3713 TREPR_3714 TREPR_3714 TREPR_3714 461538 461966 - Mov34/MPN/PAD-1 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3714 TREPR_3715 TREPR_3715 TREPR_3715 461230 461514 - thiamineS protein identified by match to protein family HMM PF02597 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3715 TREPR_3716 TREPR_3716 TREPR_3716 460055 461227 - Uba/ThiF-type NAD/FAD-binding protein identified by match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3716 TREPR_3717 TREPR_3717 TREPR_3717 458949 459893 - srpi protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3717 TREPR_3718 TREPR_3718 TREPR_3718 457085 458962 - probable cysteine desulfurase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01979 gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3718 TREPR_3719 TREPR_3719 TREPR_3719 456114 457073 - serine acetyltransferase%2C plasmid identified by match to protein family HMM PF00132 gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3719 TREPR_3720 TREPR_3720 TREPR_3720 455316 456092 + ATP-binding protein identified by match to protein family HMM PF00005 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3720 TREPR_3721 TREPR_3721 TREPR_3721 454643 455302 + L-cystine transport system permease protein TcyL identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3721 TREPR_3722 TREPR_3722 TREPR_3722 453578 454624 + extracellular solute-binding protein%2C family 3 identified by match to protein family HMM PF00497 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3722 TREPR_3723 TREPR_3723 TREPR_3723 452991 453428 + conserved hypothetical protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3723 TREPR_3724 TREPR_3724 TREPR_3724 452701 452991 + conserved hypothetical protein gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3724 TREPR_3725 TREPR_3725 TREPR_3725 451065 452120 + cellulose-binding%2C family II identified by match to protein family HMM PF01757 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3725 TREPR_3726 TREPR_3726 TREPR_3726 449540 451003 + putative polysaccharide biosynthesis/export domain protein identified by match to protein family HMM PF02563 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3726 TREPR_3728 TREPR_3728 TREPR_3728 448021 449400 + NoeA host specific nodulation protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3728 TREPR_3729 TREPR_3729 TREPR_3729 447830 448009 + hypothetical protein identified by glimmer%3B putative gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3729 TREPR_3730 TREPR_3730 TREPR_3730 446178 447797 + hypothetical protein identified by glimmer%3B putative gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3730 TREPR_3731 TREPR_3731 TREPR_3731 445107 446114 + putative lipopolysaccharide biosynthesis protein identified by match to protein family HMM PF02706 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3731 TREPR_3732 TREPR_3732 TREPR_3732 443899 445071 + glycosyltransferase%2C family 1 identified by match to protein family HMM PF00534 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3732 TREPR_3733 TREPR_3733 TREPR_3733 443190 443801 + galactoside O-acetyltransferase identified by match to protein family HMM PF00132 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3733 TREPR_3734 TREPR_3734 TREPR_3734 442269 443189 + nucleotide-diphospho-sugar transferase domain protein gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3734 TREPR_3735 TREPR_3735 TREPR_3735 441373 442269 + alpha-1%2C2-fucosyltransferase identified by match to protein family HMM PF01531 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3735 TREPR_3736 TREPR_3736 TREPR_3736 440746 441336 + conserved hypothetical protein identified by match to protein family HMM PF03269 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3736 TREPR_3738 TREPR_3738 TREPR_3738 439499 440356 + putative sugar transferase gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3738 TREPR_3739 TREPR_3739 TREPR_3739 438397 439407 + UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3739 TREPR_3740 TREPR_3740 TREPR_3740 437315 438382 + conserved hypothetical protein gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3740 TREPR_3741 TREPR_3741 TREPR_3741 436464 437312 + conserved hypothetical protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3741 TREPR_3742 TREPR_3742 TREPR_3742 434745 436454 + wlab protein identified by match to protein family HMM PF00005 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3742 TREPR_3743 TREPR_3743 TREPR_3743 434604 434732 + putative epimerase/dehydratase%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3743 TREPR_3744 TREPR_3744 TREPR_3744 433512 434348 + glycosyltransferase%2C family 2 identified by match to protein family HMM PF00535 gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3744 TREPR_3745 TREPR_3745 TREPR_3745 432424 433467 + LPS biosynthesis glycosyltransferase-like protein identified by match to protein family HMM PF00534 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3745 TREPR_3746 TREPR_3746 TREPR_3746 431010 432404 + putative membrane protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3746 TREPR_3747 TREPR_3747 TREPR_3747 430147 430980 + glycosyltransferase family 2 identified by match to protein family HMM PF00535 gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3747 TREPR_3748 TREPR_3748 TREPR_3748 429503 429712 + filamentation induced by cAMP protein Fic gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3748 TREPR_3749 TREPR_3749 TREPR_3749 428952 429539 + conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain%3B this region contains one or more premature stops and/or frameshifts pseudogene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3749 TREPR_3750 TREPR_3750 TREPR_3750 428685 428846 + conserved protein%2C with A weak D-galactarate dehydratase/altronate hydrolase domain%3B this region contains one or more premature stops and/or frameshifts pseudogene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3750 TREPR_3751 TREPR_3751 TREPR_3751 428089 428580 + hypothetical protein identified by glimmer%3B putative gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3751 TREPR_3753 TREPR_3753 cysK cysK 426527 427447 - cysteine synthase A identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3753 TREPR_3754 TREPR_3754 TREPR_3754 426344 426493 - hypothetical protein identified by glimmer%3B putative gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3754 TREPR_3755 TREPR_3755 TREPR_3755 425778 426275 + putative YwbO identified by match to protein family HMM PF01323 gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3755 TREPR_3756 TREPR_3756 TREPR_3756 424829 425752 + indigoidine synthase A family protein identified by match to protein family HMM PF04227 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3756 TREPR_3757 TREPR_3757 TREPR_3757 423866 424819 + kinase%2C PfkB family identified by match to protein family HMM PF00294 gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3757 TREPR_3758 TREPR_3758 TREPR_3758 423018 423869 + radical SAM identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3758 TREPR_3759 TREPR_3759 TREPR_3759 421472 422986 + conserved hypothetical protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3759 TREPR_3760 TREPR_3760 TREPR_3760 420307 421137 + cobalt transport protein superfamily identified by match to protein family HMM PF02361 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3760 TREPR_3761 TREPR_3761 TREPR_3761 418610 420310 + putative ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3761 TREPR_3762 TREPR_3762 TREPR_3762 417964 418515 + conserved hypothetical protein identified by match to protein family HMM PF07155 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3762 TREPR_3763 TREPR_3763 TREPR_3763 417098 417595 + putative addiction module antidote protein%2C HigA family identified by match to protein family HMM PF01381%3B match to protein family HMM TIGR02607 gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3763 TREPR_3764 TREPR_3764 TREPR_3764 416512 416994 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3764 TREPR_3765 TREPR_3765 TREPR_3765 415901 416329 + conserved domain protein identified by match to protein family HMM PF00037 gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3765 TREPR_3767 TREPR_3767 TREPR_3767 414715 415659 - type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3767 TREPR_3768 TREPR_3768 TREPR_3768 413415 414713 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3768 TREPR_3769 TREPR_3769 TREPR_3769 412548 413408 + peptidase%2C M48 family identified by match to protein family HMM PF01435 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3769 TREPR_3770 TREPR_3770 TREPR_3770 412053 412454 + conserved hypothetical protein gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3770 TREPR_3771 TREPR_3771 lon_1 lon_1 409606 412047 + endopeptidase La identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3771 TREPR_3772 TREPR_3772 TREPR_3772 408679 409149 + hemerythrin family protein identified by match to protein family HMM PF01814%3B match to protein family HMM TIGR02481 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3772 TREPR_3773 TREPR_3773 argA argA 407198 408550 - amino-acid N-acetyltransferase identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01890 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3773 TREPR_3774 TREPR_3774 purD purD 405772 407103 + phosphoribosylamine--glycine ligase identified by match to protein family HMM PF01071%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3774 TREPR_3776 TREPR_3776 TREPR_3776 404093 405622 - hypothetical protein identified by glimmer%3B putative gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3776 TREPR_3777 TREPR_3777 TREPR_3777 403002 403979 + biotin synthase (Biotin synthetase) identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3777 TREPR_3778 TREPR_3778 TREPR_3778 401317 402978 + bifunctional purine biosynthesis protein PurH identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3778 TREPR_3779 TREPR_3779 TREPR_3779 400130 401299 + Fe-S oxidoreductase identified by match to protein family HMM PF00248 gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3779 TREPR_3780 TREPR_3780 purN purN 399488 400099 + phosphoribosylglycinamide formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3780 TREPR_3781 TREPR_3781 TREPR_3781 399336 399491 + hypothetical protein identified by glimmer%3B putative gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3781 TREPR_3782 TREPR_3782 purM purM 398243 399343 + phosphoribosylformylglycinamidine cyclo-ligase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3782 TREPR_3783 TREPR_3783 TREPR_3783 397323 398201 + deoxyribose-phosphate aldolase superfamily identified by match to protein family HMM PF01791 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3783 TREPR_3784 TREPR_3784 TREPR_3784 395539 397161 - FGGY domain protein identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3784 TREPR_3785 TREPR_3785 TREPR_3785 395158 395508 - polyketide synthesis domain protein identified by match to protein family HMM PF07883 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3785 TREPR_3786 TREPR_3786 purF purF 393586 395058 + amidophosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3786 TREPR_3787 TREPR_3787 purC purC 392892 393611 + phosphoribosylaminoimidazolesuccinocarboxamide synthase identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR00081 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3787 TREPR_3788 TREPR_3788 purE purE 392401 392895 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3788 TREPR_3789 TREPR_3789 TREPR_3789 390919 392307 + MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3789 TREPR_3790 TREPR_3790 TREPR_3790 389740 390915 + phage infection protein identified by match to protein family HMM TIGR03061%3B match to protein family HMM TIGR03062 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3790 TREPR_3791 TREPR_3791 TREPR_3791 389096 389743 + metallo-beta-lactamase superfamily hydrolase identified by match to protein family HMM PF00753 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3791 TREPR_3792 TREPR_3792 TREPR_3792 388509 389099 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3792 TREPR_3793 TREPR_3793 TREPR_3793 386978 388363 + conserved hypothetical protein gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3793 TREPR_3794 TREPR_3794 gidB gidB 386262 386993 + 16S rRNA methyltransferase GidB identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3794 TREPR_3795 TREPR_3795 TREPR_3795 383668 386190 + tex protein identified by match to protein family HMM PF00575%3B match to protein family HMM PF09371 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3795 TREPR_3796 TREPR_3796 TREPR_3796 379846 383655 + ATP-dependent DNA helicase%2C UvrD/Rep family identified by match to protein family HMM PF00580 gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3796 TREPR_3797 TREPR_3797 TREPR_3797 376851 379853 + conserved hypothetical protein gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3797 TREPR_3798 TREPR_3798 TREPR_3798 376120 376851 + conserved hypothetical protein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3798 TREPR_3799 TREPR_3799 TREPR_3799 373677 375989 - putative transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3799 TREPR_3800 TREPR_3800 TREPR_3800 373078 373506 - flavodoxin identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01753 gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3800 TREPR_3801 TREPR_3801 TREPR_3801 372958 373077 + hypothetical protein identified by glimmer%3B putative gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3801 TREPR_3802 TREPR_3802 TREPR_3802 371718 372893 + phosphoglycerate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3802 TREPR_3803 TREPR_3803 serC serC 370591 371697 + phosphoserine transaminase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01364 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3803 TREPR_3804 TREPR_3804 TREPR_3804 369824 370555 + CoA-binding domain protein identified by match to protein family HMM PF02629 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3804 TREPR_3805 TREPR_3805 TREPR_3805 367284 368981 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3805 TREPR_3806 TREPR_3806 TREPR_3806 368978 369736 - hypothetical protein identified by glimmer%3B putative gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3806 TREPR_3807 TREPR_3807 TREPR_3807 366574 367230 + hemolysin-3 identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065 gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3807 TREPR_3808 TREPR_3808 TREPR_3808 363707 366472 + putative lipoprotein gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3808 TREPR_3809 TREPR_3809 TREPR_3809 362540 363424 + conserved hypothetical protein identified by match to protein family HMM PF04378 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3809 TREPR_3810 TREPR_3810 TREPR_3810 361585 362448 + hypothetical protein identified by glimmer%3B putative gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3810 TREPR_3811 TREPR_3811 TREPR_3811 360530 361507 + DHH superfamily protein%2C subfamily 1 identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3811 TREPR_3812 TREPR_3812 TREPR_3812 360039 360458 + hypothetical protein identified by glimmer%3B putative gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3812 TREPR_3813 TREPR_3813 TREPR_3813 359114 360001 + PHP domain protein identified by match to protein family HMM PF02811 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3813 TREPR_3814 TREPR_3814 TREPR_3814 357966 358967 - putative cyclic nucleotide-binding protein identified by match to protein family HMM PF00027%3B match to protein family HMM PF00515 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3814 TREPR_3815 TREPR_3815 TREPR_3815 357308 357964 - cyclic nucleotide-binding protein identified by match to protein family HMM PF00027 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3815 TREPR_3816 TREPR_3816 TREPR_3816 356003 357115 - putative lipoprotein%2C RlpA family identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3816 TREPR_3817 TREPR_3817 TREPR_3817 355050 355742 + putative beta-phosphoglucomutase (Beta-PGM) identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3817 TREPR_3818 TREPR_3818 TREPR_3818 354130 355032 + RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3818 TREPR_3819 TREPR_3819 recG recG 351521 353806 + ATP-dependent DNA helicase RecG identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00643 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3819 TREPR_3820 TREPR_3820 TREPR_3820 350909 351496 + yggt family protein identified by match to protein family HMM PF02325 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3820 TREPR_3821 TREPR_3821 TREPR_3821 346906 350898 + DNA polymerase III subunit alpha identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3821 TREPR_3823 TREPR_3823 TREPR_3823 346013 346261 - hypothetical protein%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by glimmer%3B putative pseudogene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3823 TREPR_3824 TREPR_3824 TREPR_3824 345616 346023 - PIN domain protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3824 TREPR_3825 TREPR_3825 TREPR_3825 345201 345380 + putative lipoprotein gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3825 TREPR_3827 TREPR_3827 TREPR_3827 344739 344897 - hypothetical protein identified by glimmer%3B putative gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3827 TREPR_3828 TREPR_3828 TREPR_3828 344073 344624 - hypothetical protein identified by glimmer%3B putative gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3828 TREPR_3829 TREPR_3829 TREPR_3829 342943 344082 - ATP-binding protein gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3829 TREPR_3830 TREPR_3830 TREPR_3830 341995 342807 + 4Fe-4S ferredoxin iron-sulfur binding domain protein identified by match to protein family HMM PF00037 gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3830 TREPR_3832 TREPR_3832 TREPR_3832 340448 341800 + amidohydrolase identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3832 TREPR_3833 TREPR_3833 TREPR_3833 339771 340451 + putative membrane protein gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3833 TREPR_3834 TREPR_3834 TREPR_3834 339034 339756 + putative membrane protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3834 TREPR_3835 TREPR_3835 TREPR_3835 337465 338970 + dihydrolipoyl dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3835 TREPR_3836 TREPR_3836 TREPR_3836 336414 337442 + lipoate-protein ligase A (Lipoate--protein ligase) identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00545 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3836 TREPR_3837 TREPR_3837 TREPR_3837 334970 336403 + glycine dehydrogenase (decarboxylating) identified by match to protein family HMM PF01212%3B match to protein family HMM PF02347%3B overlaps another CDS with the same product name gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3837 TREPR_3838 TREPR_3838 TREPR_3838 333624 334973 + glycine dehydrogenase (decarboxylating) identified by match to protein family HMM PF02347%3B overlaps another CDS with the same product name gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3838 TREPR_3839 TREPR_3839 gcvH gcvH 333242 333613 + glycine cleavage system H protein identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527 gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3839 TREPR_3840 TREPR_3840 gcvT gcvT 332132 333217 + aminomethyltransferase identified by match to protein family HMM PF01571%3B match to protein family HMM PF08669%3B match to protein family HMM TIGR00528 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3840 TREPR_3841 TREPR_3841 lgt lgt 330595 331656 - prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3841 TREPR_3842 TREPR_3842 TREPR_3842 328245 330521 + conserved hypothetical protein gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3842 TREPR_3843 TREPR_3843 TREPR_3843 327391 328242 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3843 TREPR_3844 TREPR_3844 TREPR_3844 326470 327381 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3844 TREPR_3845 TREPR_3845 TREPR_3845 325129 326397 + putative sugar ABC-transporter%2C sugar-binding protein identified by match to protein family HMM PF01547 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3845 TREPR_3846 TREPR_3846 TREPR_3846 323916 325046 + MdsC protein gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3846 TREPR_3847 TREPR_3847 TREPR_3847 325023 325166 - hypothetical protein identified by glimmer%3B putative gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3847 TREPR_3848 TREPR_3848 TREPR_3848 323005 323916 + conserved hypothetical protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3848 TREPR_3849 TREPR_3849 thyX thyX 322141 322983 + thymidylate synthase%2C flavin-dependent identified by match to protein family HMM PF02511%3B match to protein family HMM TIGR02170 gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3849 TREPR_3851 TREPR_3851 TREPR_3851 321819 322010 - conserved hypothetical protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3851 TREPR_3852 TREPR_3852 TREPR_3852 321649 321822 - conserved domain protein identified by match to protein family HMM PF07927 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3852 TREPR_3853 TREPR_3853 TREPR_3853 321299 321640 + DNA-binding protein identified by match to protein family HMM PF01381 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3853 TREPR_3854 TREPR_3854 TREPR_3854 319024 321189 - cell surface protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3854 TREPR_3855 TREPR_3855 TREPR_3855 318432 318941 - hypothetical protein identified by glimmer%3B putative gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3855 TREPR_3856 TREPR_3856 TREPR_3856 317376 318287 - hypothetical protein identified by glimmer%3B putative gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3856 TREPR_3857 TREPR_3857 TREPR_3857 315642 317126 + tetratricopeptide repeat domain protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3857 TREPR_3858 TREPR_3858 trxB trxB 314625 315551 - thioredoxin-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF01266%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3858 TREPR_3859 TREPR_3859 TREPR_3859 313490 314581 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3859 TREPR_3860 TREPR_3860 TREPR_3860 312812 313357 + hypothetical protein identified by glimmer%3B putative gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3860 TREPR_3861 TREPR_3861 TREPR_3861 311107 312696 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3861 TREPR_3862 TREPR_3862 TREPR_3862 309934 310896 + tetratricopeptide repeat protein%3B this gene contains a premature stop which may be the result of a sequencing error%3B identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 pseudogene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3862 TREPR_3863 TREPR_3863 TREPR_3863 308572 309924 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3863 TREPR_3864 TREPR_3864 TREPR_3864 307631 308413 + endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3864 TREPR_3865 TREPR_3865 TREPR_3865 306802 307545 + hypothetical protein identified by glimmer%3B putative gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3865 TREPR_3866 TREPR_3866 TREPR_3866 304723 306756 + flagellar biosynthesis protein FlhA identified by match to protein family HMM PF00771 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3866 TREPR_3867 TREPR_3867 TREPR_3867 303857 304531 + endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3867 TREPR_3868 TREPR_3868 TREPR_3868 303217 303810 + putative exonuclease identified by match to protein family HMM PF00929 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3868 TREPR_3870 TREPR_3870 TREPR_3870 302279 302677 + HepN domain protein identified by match to protein family HMM PF05168 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3870 TREPR_3871 TREPR_3871 TREPR_3871 301963 302286 + DNA polymerase%2C beta domain protein region identified by match to protein family HMM PF01909 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3871 TREPR_3872 TREPR_3872 TREPR_3872 300859 301884 + conserved hypothetical protein gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3872 TREPR_3873 TREPR_3873 TREPR_3873 300696 300818 - hypothetical protein identified by glimmer%3B putative gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3873 TREPR_3874 TREPR_3874 TREPR_3874 298989 300680 - glycosyl hydrolase%2C family 3 identified by match to protein family HMM PF00933 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3874 TREPR_3875 TREPR_3875 TREPR_3875 298128 298985 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3875 TREPR_3876 TREPR_3876 TREPR_3876 296534 298072 - cardiolipin synthetase identified by match to protein family HMM PF00614 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3876 TREPR_3877 TREPR_3877 TREPR_3877 293827 296409 + DNA polymerase II identified by match to protein family HMM PF00136%3B match to protein family HMM PF03104 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3877 TREPR_3878 TREPR_3878 TREPR_3878 292452 293852 + Cl- channel%2C voltage-gated family protein identified by match to protein family HMM PF00654 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3878 TREPR_3879 TREPR_3879 TREPR_3879 292040 292213 + conserved domain protein gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3879 TREPR_3880 TREPR_3880 TREPR_3880 291840 292043 + conserved hypothetical protein gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3880 TREPR_3881 TREPR_3881 TREPR_3881 289857 291578 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3881 TREPR_3882 TREPR_3882 TREPR_3882 288893 289786 - putative membrane protein identified by match to protein family HMM PF00892 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3882 TREPR_3883 TREPR_3883 TREPR_3883 288040 288423 + O-methyltransferase gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3883 TREPR_3884 TREPR_3884 TREPR_3884 287708 287842 + hypothetical protein identified by glimmer%3B putative gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3884 TREPR_3885 TREPR_3885 TREPR_3885 287603 287728 - hypothetical protein identified by glimmer%3B putative gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3885 TREPR_3886 TREPR_3886 TREPR_3886 286261 287352 - hypothetical protein identified by glimmer%3B putative gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3886 TREPR_3887 TREPR_3887 TREPR_3887 285433 286065 - transposase IS4 family%3B this gene contains a frame shift which may be the result of a sequencing error pseudogene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3887 TREPR_3888 TREPR_3888 TREPR_3888 284522 285469 - transposase%2C IS4 family%3B this gene contains a frame shift which may be the result of a sequencing error%3B identified by match to protein family HMM PF01609 pseudogene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3888 TREPR_3889 TREPR_3889 TREPR_3889 283286 284350 + acyltransferase 3 identified by match to protein family HMM PF01757 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3889 TREPR_3890 TREPR_3890 TREPR_3890 281910 283160 - integrase domain protein identified by match to protein family HMM PF00665 gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3890 TREPR_3891 TREPR_3891 TREPR_3891 281354 281806 + hypothetical protein identified by glimmer%3B putative gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3891 TREPR_3892 TREPR_3892 TREPR_3892 280502 281740 - integrase domain protein identified by match to protein family HMM PF00665 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3892 TREPR_3893 TREPR_3893 TREPR_3893 280335 280466 + hypothetical protein identified by glimmer%3B putative gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3893 TREPR_3895 TREPR_3895 TREPR_3895 279937 280194 + peptidase S45%2C penicillin amidase gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3895 TREPR_3896 TREPR_3896 TREPR_3896 250535 250608 + tRNA-Arg tRNA gene225 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3896 TREPR_3897 TREPR_3897 TREPR_3897 203459 203530 + tRNA-Val tRNA gene190 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3897 TREPR_3898 TREPR_3898 rrfA rrfA 184388 184503 + 5S ribosomal RNA rRNA gene175 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3898 TREPR_3899 TREPR_3899 rrlA rrlA 181291 184200 + 23S ribosomal RNA rRNA gene174 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3899 TREPR_3900 TREPR_3900 TREPR_3900 181046 181119 + tRNA-Ile tRNA gene173 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3900 TREPR_3901 TREPR_3901 rrsA rrsA 179378 180840 + 16S ribosomal RNA rRNA gene172 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3901 TREPR_3902 TREPR_3902 TREPR_3902 161990 162062 + tRNA-Met tRNA gene154 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3902 TREPR_3904 TREPR_3904 srpB srpB 3893292 3893392 - Bacterial signal recognition particle RNA gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3904 TREPR_3905 TREPR_3905 TREPR_3905 3826953 3827028 - tRNA-Thr tRNA gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3905 TREPR_3906 TREPR_3906 TREPR_3906 3705708 3705781 + tRNA-Ile tRNA gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3906 TREPR_3907 TREPR_3907 TREPR_3907 3622548 3622620 + tRNA-Pro tRNA gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3907 TREPR_3908 TREPR_3908 TREPR_3908 3580141 3580211 - tRNA-Gly tRNA gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3908 TREPR_3909 TREPR_3909 TREPR_3909 3543144 3543217 - tRNA-Ala tRNA gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3909 TREPR_3910 TREPR_3910 TREPR_3910 3517841 3517913 - tRNA-Asn tRNA gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3910 TREPR_3911 TREPR_3911 TREPR_3911 3414866 3414949 + tRNA-Leu tRNA gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3911 TREPR_3912 TREPR_3912 TREPR_3912 3409354 3409426 - tRNA-Thr tRNA gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3912 TREPR_3913 TREPR_3913 TREPR_3913 3409080 3409152 - tRNA-Trp tRNA gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3913 TREPR_3914 TREPR_3914 TREPR_3914 3111015 3111086 + tRNA-Gln tRNA gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3914 TREPR_3915 TREPR_3915 rrsB rrsB 2698050 2699512 - 16S ribosomal RNA rRNA gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3915 TREPR_3916 TREPR_3916 TREPR_3916 2697727 2697800 - tRNA-Ala tRNA gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3916 TREPR_3917 TREPR_3917 rrlB rrlB 2694623 2697532 - 23S ribosomal RNA rRNA gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3917 TREPR_3918 TREPR_3918 rrfB rrfB 2694320 2694435 - 5S ribosomal RNA rRNA gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3918 TREPR_3919 TREPR_3919 TREPR_3919 2448943 2449016 - tRNA-Pro tRNA gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3919 TREPR_3920 TREPR_3920 TREPR_3920 2403187 2403259 - tRNA-Lys tRNA gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3920 TREPR_3922 TREPR_3922 TREPR_3922 2340047 2340120 + tRNA-Val tRNA gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3922 TREPR_3923 TREPR_3923 TREPR_3923 2339101 2339175 - tRNA-His tRNA gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3923 TREPR_3924 TREPR_3924 TREPR_3924 2225325 2225396 - tRNA-Cys tRNA gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3924 TREPR_3925 TREPR_3925 TREPR_3925 1980404 1980476 - tRNA-Thr tRNA gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3925 TREPR_3926 TREPR_3926 TREPR_3926 1980293 1980374 - tRNA-Tyr tRNA gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3926 TREPR_3927 TREPR_3927 TREPR_3927 1806536 1806607 + tRNA-Gly tRNA gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3927 TREPR_3928 TREPR_3928 TREPR_3928 1800809 1800880 + tRNA-Glu tRNA gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3928 TREPR_3929 TREPR_3929 TREPR_3929 1747787 1748134 - tmRNA gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3929 TREPR_3930 TREPR_3930 TREPR_3930 1597601 1597674 - tRNA-Arg tRNA gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3930 TREPR_3931 TREPR_3931 TREPR_3931 1597112 1597184 - tRNA-Lys tRNA gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3931 TREPR_3932 TREPR_3932 TREPR_3932 1597005 1597076 - tRNA-Gly tRNA gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3932 TREPR_3933 TREPR_3933 TREPR_3933 1596318 1596398 - tRNA-Leu tRNA gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3933 TREPR_3934 TREPR_3934 TREPR_3934 1589043 1589114 - tRNA-Gly tRNA gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3934 TREPR_3935 TREPR_3935 TREPR_3935 1512375 1512448 + tRNA-Arg tRNA gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3935 TREPR_3936 TREPR_3936 TREPR_3936 1461916 1461988 + tRNA-Met tRNA gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3936 TREPR_3937 TREPR_3937 TREPR_3937 1438777 1438859 + tRNA-Leu tRNA gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3937 TREPR_3938 TREPR_3938 TREPR_3938 1335644 1335716 + tRNA-Phe tRNA gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3938 TREPR_3939 TREPR_3939 TREPR_3939 1313617 1313698 - tRNA-Leu tRNA gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3939 TREPR_3940 TREPR_3940 TREPR_3940 1311409 1311490 - tRNA-Leu tRNA gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3940 TREPR_3941 TREPR_3941 TREPR_3941 1227571 1227643 - tRNA-Arg tRNA gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3941 TREPR_3942 TREPR_3942 TREPR_3942 1206491 1206564 + tRNA-Val tRNA gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3942 TREPR_3943 TREPR_3943 TREPR_3943 1083137 1083230 - tRNA-Sec tRNA gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3943 TREPR_3945 TREPR_3945 TREPR_3945 784157 784229 + tRNA-Ala tRNA gene732 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3945 TREPR_3946 TREPR_3946 TREPR_3946 724471 724541 - tRNA-Gln tRNA gene686 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3946 TREPR_3947 TREPR_3947 TREPR_3947 722283 722354 - tRNA-Glu tRNA gene682 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3947 TREPR_3948 TREPR_3948 TREPR_3948 708068 708143 + tRNA-Pro tRNA gene667 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3948 TREPR_3949 TREPR_3949 TREPR_3949 707961 708035 + tRNA-Asp tRNA gene666 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3949 TREPR_3950 TREPR_3950 TREPR_3950 640994 641076 + tRNA-Leu tRNA gene601 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3950 TREPR_3951 TREPR_3951 TREPR_3951 553765 553851 + tRNA-Ser tRNA gene524 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3951 TREPR_3952 TREPR_3952 TREPR_3952 553619 553705 + tRNA-Ser tRNA gene523 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3952 TREPR_3953 TREPR_3953 TREPR_3953 537827 537903 + tRNA-Arg tRNA gene508 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3953 TREPR_3954 TREPR_3954 TREPR_3954 537556 537643 + tRNA-Ser tRNA gene507 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3954 TREPR_3955 TREPR_3955 TREPR_3955 537391 537475 + tRNA-Ser tRNA gene506 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3955 TREPR_3956 TREPR_3956 TREPR_3956 504463 504536 + tRNA-Met tRNA gene475 http://www.ncbi.nlm.nih.gov/gene/?term=TREPR_3956