locus-tag class description JO40_00025 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 JO40_00025 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 JO40_00025 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal JO40_00025 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain JO40_00025 IPR036291 NAD(P)-binding domain superfamily JO40_00025 IPR026255 NAD(P) transhydrogenase, alpha subunit JO40_00025 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal JO40_00035 IPR034300 NADP transhydrogenase beta-like domain JO40_00035 IPR012136 NADP transhydrogenase, beta subunit JO40_00035 IPR029035 DHS-like NAD/FAD-binding domain superfamily JO40_00040 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO40_00040 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO40_00040 IPR002302 Leucine-tRNA ligase JO40_00040 IPR025709 Leucyl-tRNA synthetase, editing domain JO40_00040 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_00040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_00040 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_00040 IPR015413 Methionyl/Leucyl tRNA synthetase JO40_00040 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO40_00050 IPR001478 PDZ domain JO40_00050 IPR008915 Peptidase M50 JO40_00050 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase JO40_00050 IPR036034 PDZ superfamily JO40_00050 IPR041489 PDZ domain 6 JO40_00055 IPR036291 NAD(P)-binding domain superfamily JO40_00055 IPR036169 DXP reductoisomerase, C-terminal domain superfamily JO40_00055 IPR026877 DXP reductoisomerase C-terminal domain JO40_00055 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal JO40_00055 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal JO40_00055 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase JO40_00060 IPR000374 Phosphatidate cytidylyltransferase JO40_00065 IPR036424 Decaprenyl diphosphate synthase-like superfamily JO40_00065 IPR001441 Decaprenyl diphosphate synthase-like JO40_00065 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site JO40_00070 IPR036191 RRF superfamily JO40_00070 IPR002661 Ribosome recycling factor JO40_00070 IPR023584 Ribosome recycling factor domain JO40_00075 IPR018101 Translation elongation factor Ts, conserved site JO40_00075 IPR009060 UBA-like superfamily JO40_00075 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation JO40_00075 IPR001816 Translation elongation factor EFTs/EF1B JO40_00075 IPR036402 Elongation factor Ts, dimerisation domain superfamily JO40_00080 IPR018130 Ribosomal protein S2, conserved site JO40_00080 IPR001865 Ribosomal protein S2 JO40_00080 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily JO40_00080 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid JO40_00085 IPR029001 Inosine triphosphate pyrophosphatase-like JO40_00085 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein JO40_00090 IPR016024 Armadillo-type fold JO40_00090 IPR011989 Armadillo-like helical JO40_00105 IPR002371 Flagellar hook-associated protein 1 JO40_00105 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO40_00105 IPR010810 Flagellin hook, IN motif JO40_00110 IPR001492 Flagellin JO40_00110 IPR010810 Flagellin hook, IN motif JO40_00110 IPR001029 Flagellin, D0/D1 domain JO40_00110 IPR042187 Flagellin, C-terminal domain, subdomain 2 JO40_00115 IPR003775 Flagellar assembly factor FliW JO40_00115 IPR024046 Flagellar assembly factor FliW domain superfamily JO40_00120 IPR003751 Translational regulator CsrA JO40_00120 IPR036107 Carbon storage regulator superfamily JO40_00130 IPR011055 Duplicated hybrid motif JO40_00130 IPR010090 Phage tail tape measure protein JO40_00130 IPR000189 Prokaryotic transglycosylase, active site JO40_00130 IPR008258 Transglycosylase SLT domain 1 JO40_00130 IPR016047 Peptidase M23 JO40_00130 IPR023346 Lysozyme-like domain superfamily JO40_00155 IPR006685 Mechanosensitive ion channel MscS JO40_00155 IPR030192 Miniconductance mechanosensitive channel YbdG JO40_00155 IPR010920 LSM domain superfamily JO40_00155 IPR011066 Mechanosensitive ion channel MscS, C-terminal JO40_00175 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding JO40_00175 IPR029151 Periplasmic sensor-like domain superfamily JO40_00175 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00175 IPR003660 HAMP domain JO40_00175 IPR033479 Double Cache domain 1 JO40_00195 IPR039424 Solute-binding protein family 5 JO40_00195 IPR000914 Solute-binding protein family 5 domain JO40_00195 IPR030678 Peptide/nickel binding protein, MppA-type JO40_00200 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_00200 IPR035906 MetI-like superfamily JO40_00205 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO40_00205 IPR035906 MetI-like superfamily JO40_00205 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_00210 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_00210 IPR017871 ABC transporter, conserved site JO40_00210 IPR003439 ABC transporter-like JO40_00210 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00210 IPR003593 AAA+ ATPase domain JO40_00215 IPR003593 AAA+ ATPase domain JO40_00215 IPR017871 ABC transporter, conserved site JO40_00215 IPR003439 ABC transporter-like JO40_00215 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_00215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00220 IPR000192 Aminotransferase class V domain JO40_00220 IPR015424 Pyridoxal phosphate-dependent transferase JO40_00220 IPR010970 Cysteine desulfurase, SufS JO40_00220 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_00220 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_00225 IPR023061 Selenophosphate synthetase, class I JO40_00225 IPR036676 PurM-like, C-terminal domain superfamily JO40_00225 IPR016188 PurM-like, N-terminal domain JO40_00225 IPR010918 PurM-like, C-terminal domain JO40_00225 IPR004536 Selenophosphate synthetase JO40_00225 IPR036921 PurM-like, N-terminal domain superfamily JO40_00245 IPR001455 TusA-like domain JO40_00245 IPR022931 Sulfur carrier protein TusA JO40_00245 IPR036868 TusA-like domain superfamily JO40_00260 IPR022631 S-adenosylmethionine synthetase, conserved site JO40_00260 IPR022630 S-adenosylmethionine synthetase, C-terminal JO40_00260 IPR022628 S-adenosylmethionine synthetase, N-terminal JO40_00260 IPR002133 S-adenosylmethionine synthetase JO40_00260 IPR022636 S-adenosylmethionine synthetase superfamily JO40_00260 IPR022629 S-adenosylmethionine synthetase, central domain JO40_00270 IPR000914 Solute-binding protein family 5 domain JO40_00270 IPR023765 Solute-binding protein family 5, conserved site JO40_00270 IPR039424 Solute-binding protein family 5 JO40_00270 IPR030678 Peptide/nickel binding protein, MppA-type JO40_00275 IPR035906 MetI-like superfamily JO40_00275 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_00280 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO40_00280 IPR035906 MetI-like superfamily JO40_00280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_00285 IPR017871 ABC transporter, conserved site JO40_00285 IPR003439 ABC transporter-like JO40_00285 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_00285 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00285 IPR003593 AAA+ ATPase domain JO40_00290 IPR003593 AAA+ ATPase domain JO40_00290 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_00290 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00290 IPR017871 ABC transporter, conserved site JO40_00290 IPR003439 ABC transporter-like JO40_00310 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_00310 IPR012340 Nucleic acid-binding, OB-fold JO40_00310 IPR029038 Methionyl-tRNA synthetase, Zn-domain JO40_00310 IPR033911 Methioninyl-tRNA synthetase core domain JO40_00310 IPR015413 Methionyl/Leucyl tRNA synthetase JO40_00310 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_00310 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain JO40_00310 IPR023458 Methionine-tRNA ligase, type 1 JO40_00310 IPR002547 tRNA-binding domain JO40_00310 IPR014758 Methionyl-tRNA synthetase JO40_00310 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_00320 IPR003593 AAA+ ATPase domain JO40_00320 IPR011527 ABC transporter type 1, transmembrane domain JO40_00320 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_00320 IPR003439 ABC transporter-like JO40_00320 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00320 IPR039421 Type I protein exporter JO40_00320 IPR017871 ABC transporter, conserved site JO40_00340 IPR002528 Multi antimicrobial extrusion protein JO40_00345 IPR029151 Periplasmic sensor-like domain superfamily JO40_00345 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00345 IPR003660 HAMP domain JO40_00345 IPR033479 Double Cache domain 1 JO40_00345 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding JO40_00350 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal JO40_00350 IPR004770 Na+/H+ antiporter NhaC JO40_00365 IPR035965 PAS domain superfamily JO40_00365 IPR013767 PAS fold JO40_00365 IPR000014 PAS domain JO40_00365 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00365 IPR036291 NAD(P)-binding domain superfamily JO40_00365 IPR002197 DNA binding HTH domain, Fis-type JO40_00365 IPR025944 Sigma-54 interaction domain, conserved site JO40_00365 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO40_00365 IPR009057 Homeobox-like domain superfamily JO40_00365 IPR003593 AAA+ ATPase domain JO40_00365 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_00365 IPR002078 RNA polymerase sigma factor 54 interaction domain JO40_00375 IPR024934 Rubredoxin-like domain JO40_00375 IPR024935 Rubredoxin domain JO40_00375 IPR018527 Rubredoxin, iron-binding site JO40_00375 IPR024922 Rubredoxin JO40_00390 IPR031157 Tr-type G domain, conserved site JO40_00390 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00390 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_00390 IPR000640 Elongation factor EFG, domain V-like JO40_00390 IPR035647 EF-G domain III/V-like JO40_00390 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_00390 IPR005225 Small GTP-binding protein domain JO40_00390 IPR000795 Transcription factor, GTP-binding domain JO40_00390 IPR009000 Translation protein, beta-barrel domain superfamily JO40_00390 IPR041095 Elongation Factor G, domain II JO40_00390 IPR004540 Translation elongation factor EFG/EF2 JO40_00390 IPR005517 Translation elongation factor EFG/EF2, domain IV JO40_00390 IPR004161 Translation elongation factor EFTu-like, domain 2 JO40_00390 IPR009022 Elongation factor G, domain III JO40_00395 IPR036823 Ribosomal protein S7 domain superfamily JO40_00395 IPR020606 Ribosomal protein S7, conserved site JO40_00395 IPR005717 Ribosomal protein S7, bacterial/organellar-type JO40_00395 IPR023798 Ribosomal protein S7 domain JO40_00395 IPR000235 Ribosomal protein S5/S7 JO40_00400 IPR012340 Nucleic acid-binding, OB-fold JO40_00400 IPR005679 Ribosomal protein S12, bacterial-type JO40_00400 IPR006032 Ribosomal protein S12/S23 JO40_00405 IPR020483 Uncharacterised protein family YgbA JO40_00415 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain JO40_00415 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_00415 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II JO40_00415 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO40_00415 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain JO40_00415 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily JO40_00415 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_00415 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain JO40_00415 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal JO40_00415 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding JO40_00415 IPR011895 Pyruvate-flavodoxin oxidoreductase JO40_00415 IPR029061 Thiamin diphosphate-binding fold JO40_00425 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme JO40_00425 IPR006237 L-methionine gamma-lyase JO40_00425 IPR015424 Pyridoxal phosphate-dependent transferase JO40_00425 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_00425 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_00435 IPR004770 Na+/H+ antiporter NhaC JO40_00435 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal JO40_00455 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_00455 IPR005532 Sulfatase-modifying factor enzyme JO40_00455 IPR016187 C-type lectin fold JO40_00470 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00470 IPR003439 ABC transporter-like JO40_00470 IPR003593 AAA+ ATPase domain JO40_00515 IPR023753 FAD/NAD(P)-binding domain JO40_00515 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal JO40_00515 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_00515 IPR013785 Aldolase-type TIM barrel JO40_00530 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily JO40_00530 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 JO40_00540 IPR000705 Galactokinase JO40_00540 IPR019539 Galactokinase galactose-binding domain JO40_00540 IPR013750 GHMP kinase, C-terminal domain JO40_00540 IPR036554 GHMP kinase, C-terminal domain superfamily JO40_00540 IPR006204 GHMP kinase N-terminal domain JO40_00540 IPR019741 Galactokinase, conserved site JO40_00540 IPR006203 GHMP kinase, ATP-binding, conserved site JO40_00540 IPR006206 Mevalonate/galactokinase JO40_00540 IPR022963 Galactokinase, bacterial JO40_00540 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_00540 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_00555 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site JO40_00555 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_00555 IPR015424 Pyridoxal phosphate-dependent transferase JO40_00555 IPR000192 Aminotransferase class V domain JO40_00555 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_00555 IPR010970 Cysteine desulfurase, SufS JO40_00585 IPR004488 Magnesium/cobalt transport protein CorA JO40_00585 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB JO40_00590 IPR002646 Poly A polymerase, head domain JO40_00590 IPR032810 CCA-adding enzyme, C-terminal JO40_00590 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain JO40_00590 IPR023068 CCA-adding enzyme, firmicutes JO40_00605 IPR002068 Alpha crystallin/Hsp20 domain JO40_00605 IPR031107 Small heat shock protein HSP20 JO40_00605 IPR008978 HSP20-like chaperone JO40_00615 IPR036736 ACP-like superfamily JO40_00615 IPR009081 Phosphopantetheine binding ACP domain JO40_00615 IPR003231 Acyl carrier protein (ACP) JO40_00620 IPR002677 Ribosomal protein L32p JO40_00620 IPR011332 Zinc-binding ribosomal protein JO40_00630 IPR006394 Glutamate mutase sigma subunit JO40_00630 IPR036724 Cobalamin-binding domain superfamily JO40_00630 IPR006158 Cobalamin (vitamin B12)-binding domain JO40_00630 IPR006159 Methylmalonyl-CoA mutase, C-terminal JO40_00640 IPR038537 TatT superfamily JO40_00640 IPR031823 TRAP transporter T-component JO40_00650 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit JO40_00650 IPR004681 TRAP transporter large membrane protein DctM JO40_00660 IPR003753 Exonuclease VII, large subunit JO40_00660 IPR025824 OB-fold nucleic acid binding domain JO40_00660 IPR020579 Exonuclease VII, large subunit, C-terminal JO40_00665 IPR041699 Lon protease, AAA domain JO40_00665 IPR008269 Peptidase S16, Lon proteolytic domain JO40_00665 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_00665 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_00665 IPR027065 Lon protease JO40_00675 IPR023504 Bacteriohemerythrin-like protein JO40_00675 IPR012312 Haemerythrin-like JO40_00675 IPR035938 Hemerythrin-like superfamily JO40_00675 IPR012827 Haemerythrin, metal-binding domain JO40_00675 IPR016131 Haemerythrin, iron-binding site JO40_00680 IPR023319 Tex-like protein, HTH domain superfamily JO40_00680 IPR003029 S1 domain JO40_00680 IPR022967 RNA-binding domain, S1 JO40_00680 IPR010994 RuvA domain 2-like JO40_00680 IPR012337 Ribonuclease H-like superfamily JO40_00680 IPR012340 Nucleic acid-binding, OB-fold JO40_00680 IPR041692 HHH domain 9 JO40_00680 IPR023323 Tex-like domain superfamily JO40_00680 IPR037027 YqgF/RNase H-like domain superfamily JO40_00680 IPR006641 YqgF/RNase H-like domain JO40_00680 IPR032639 Tex protein, YqgF-like domain JO40_00680 IPR018974 Tex-like protein, N-terminal JO40_00690 IPR017871 ABC transporter, conserved site JO40_00690 IPR003439 ABC transporter-like JO40_00690 IPR041102 UvrA, interaction domain JO40_00690 IPR041552 UvrA DNA-binding domain JO40_00690 IPR004602 UvrABC system subunit A JO40_00690 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00695 IPR003761 Exonuclease VII, small subunit JO40_00695 IPR037004 Exonuclease VII, small subunit superfamily JO40_00700 IPR037198 MutL, C-terminal domain superfamily JO40_00700 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_00700 IPR042121 MutL, C-terminal domain, regulatory subdomain JO40_00700 IPR042120 MutL, C-terminal domain, dimerisation subdomain JO40_00700 IPR014790 MutL, C-terminal, dimerisation JO40_00700 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_00700 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_00700 IPR014762 DNA mismatch repair, conserved site JO40_00700 IPR020667 DNA mismatch repair protein, MutL JO40_00700 IPR002099 DNA mismatch repair protein family, N-terminal JO40_00700 IPR013507 DNA mismatch repair protein, S5 domain 2-like JO40_00700 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms JO40_00705 IPR003660 HAMP domain JO40_00705 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00705 IPR029151 Periplasmic sensor-like domain superfamily JO40_00705 IPR004090 Chemotaxis methyl-accepting receptor JO40_00705 IPR000727 Target SNARE coiled-coil homology domain JO40_00705 IPR004090 Chemotaxis methyl-accepting receptor JO40_00705 IPR033479 Double Cache domain 1 JO40_00705 IPR003660 HAMP domain JO40_00705 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00705 IPR029151 Periplasmic sensor-like domain superfamily JO40_00705 IPR000727 Target SNARE coiled-coil homology domain JO40_00705 IPR033479 Double Cache domain 1 JO40_00710 IPR001789 Signal transduction response regulator, receiver domain JO40_00710 IPR036641 HPT domain superfamily JO40_00710 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain JO40_00710 IPR011006 CheY-like superfamily JO40_00710 IPR003660 HAMP domain JO40_00710 IPR003594 Histidine kinase/HSP90-like ATPase JO40_00710 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_00710 IPR005467 Histidine kinase domain JO40_00710 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain JO40_00710 IPR004358 Signal transduction histidine kinase-related protein, C-terminal JO40_00710 IPR019247 Histidine kinase BarA, N-terminal JO40_00710 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily JO40_00715 IPR001867 OmpR/PhoB-type DNA-binding domain JO40_00715 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_00715 IPR039420 Transcriptional regulatory protein WalR-like JO40_00715 IPR001789 Signal transduction response regulator, receiver domain JO40_00715 IPR011006 CheY-like superfamily JO40_00725 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_00725 IPR013216 Methyltransferase type 11 JO40_00725 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC JO40_00740 IPR000594 THIF-type NAD/FAD binding fold JO40_00740 IPR035985 Ubiquitin-activating enzyme JO40_00745 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase JO40_00745 IPR000715 Glycosyl transferase, family 4 JO40_00745 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site JO40_00750 IPR000722 RNA polymerase, alpha subunit JO40_00750 IPR007080 RNA polymerase Rpb1, domain 1 JO40_00750 IPR042102 RNA polymerase Rpb1, domain 3 superfamily JO40_00750 IPR012754 DNA-directed RNA polymerase, subunit beta-prime JO40_00750 IPR006592 RNA polymerase, N-terminal JO40_00750 IPR007081 RNA polymerase Rpb1, domain 5 JO40_00750 IPR007066 RNA polymerase Rpb1, domain 3 JO40_00750 IPR038120 RNA polymerase Rpb1, funnel domain superfamily JO40_00750 IPR007083 RNA polymerase Rpb1, domain 4 JO40_00755 IPR007641 RNA polymerase Rpb2, domain 7 JO40_00755 IPR007645 RNA polymerase Rpb2, domain 3 JO40_00755 IPR037034 RNA polymerase Rpb2, domain 2 superfamily JO40_00755 IPR007642 RNA polymerase Rpb2, domain 2 JO40_00755 IPR007644 RNA polymerase, beta subunit, protrusion JO40_00755 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type JO40_00755 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily JO40_00755 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain JO40_00755 IPR015712 DNA-directed RNA polymerase, subunit 2 JO40_00755 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain JO40_00755 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily JO40_00755 IPR014724 RNA polymerase Rpb2, OB-fold JO40_00765 IPR013823 Ribosomal protein L7/L12, C-terminal JO40_00765 IPR008932 Ribosomal protein L7/L12, oligomerisation JO40_00765 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like JO40_00765 IPR000206 Ribosomal protein L7/L12 JO40_00765 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily JO40_00770 IPR001790 Ribosomal protein L10P JO40_00770 IPR022973 Ribosomal protein L10 JO40_00775 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein JO40_00775 IPR005878 Ribosomal protein L1, bacterial-type JO40_00775 IPR002143 Ribosomal protein L1 JO40_00775 IPR023674 Ribosomal protein L1-like JO40_00775 IPR023673 Ribosomal protein L1, conserved site JO40_00775 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich JO40_00780 IPR020785 Ribosomal protein L11, conserved site JO40_00780 IPR036769 Ribosomal protein L11, C-terminal domain superfamily JO40_00780 IPR020783 Ribosomal protein L11, C-terminal JO40_00780 IPR006519 Ribosomal protein L11, bacterial-type JO40_00780 IPR000911 Ribosomal protein L11/L12 JO40_00780 IPR020784 Ribosomal protein L11, N-terminal JO40_00780 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily JO40_00785 IPR014722 Ribosomal protein L2, domain 2 JO40_00785 IPR001062 Transcription antitermination protein, NusG JO40_00785 IPR036735 NusG, N-terminal domain superfamily JO40_00785 IPR005824 KOW JO40_00785 IPR006645 NusG, N-terminal JO40_00785 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site JO40_00785 IPR008991 Translation protein SH3-like domain superfamily JO40_00790 IPR005807 SecE subunit of protein translocation complex, bacterial-like JO40_00790 IPR038379 SecE superfamily JO40_00790 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit JO40_00800 IPR011332 Zinc-binding ribosomal protein JO40_00800 IPR018264 Ribosomal protein L33, conserved site JO40_00800 IPR001705 Ribosomal protein L33 JO40_00800 IPR038584 Ribosomal protein L33 superfamily JO40_00820 IPR039421 Type I protein exporter JO40_00820 IPR005074 Peptidase C39, bacteriocin processing JO40_00820 IPR003593 AAA+ ATPase domain JO40_00820 IPR005897 Peptidase C39, ABC-type bacteriocin transporter JO40_00820 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00820 IPR017871 ABC transporter, conserved site JO40_00820 IPR003439 ABC transporter-like JO40_00820 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_00820 IPR011527 ABC transporter type 1, transmembrane domain JO40_00855 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_00855 IPR001404 Heat shock protein Hsp90 family JO40_00855 IPR020575 Heat shock protein Hsp90, N-terminal JO40_00855 IPR019805 Heat shock protein Hsp90, conserved site JO40_00855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_00855 IPR037196 HSP90, C-terminal domain JO40_00865 IPR000212 DNA helicase, UvrD/REP type JO40_00865 IPR014017 UvrD-like DNA helicase, C-terminal JO40_00865 IPR013986 DExx box DNA helicase domain superfamily JO40_00865 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00865 IPR034739 UvrD/AddA helicase, N-terminal JO40_00865 IPR014016 UvrD-like helicase, ATP-binding domain JO40_00865 IPR005751 ATP-dependent DNA helicase PcrA JO40_00870 IPR011527 ABC transporter type 1, transmembrane domain JO40_00870 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_00870 IPR017871 ABC transporter, conserved site JO40_00870 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00870 IPR039421 Type I protein exporter JO40_00870 IPR003593 AAA+ ATPase domain JO40_00870 IPR003439 ABC transporter-like JO40_00875 IPR017871 ABC transporter, conserved site JO40_00875 IPR039421 Type I protein exporter JO40_00875 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00875 IPR003439 ABC transporter-like JO40_00875 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_00875 IPR003593 AAA+ ATPase domain JO40_00875 IPR011527 ABC transporter type 1, transmembrane domain JO40_00880 IPR010161 Peptidase M20B, tripeptide aminopeptidase JO40_00880 IPR011650 Peptidase M20, dimerisation domain JO40_00880 IPR002933 Peptidase M20 JO40_00880 IPR036264 Bacterial exopeptidase dimerisation domain JO40_00880 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO40_00900 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily JO40_00900 IPR006130 Aspartate/ornithine carbamoyltransferase JO40_00900 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding JO40_00900 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain JO40_00900 IPR024904 Ornithine carbamoyltransferase JO40_00900 IPR002292 Ornithine/putrescine carbamoyltransferase JO40_00910 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal JO40_00910 IPR004036 Endonuclease III-like, conserved site-2 JO40_00910 IPR011257 DNA glycosylase JO40_00910 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif JO40_00910 IPR004035 Endonuclease III, iron-sulphur binding site JO40_00910 IPR005759 Endonuclease III JO40_00910 IPR003265 HhH-GPD domain JO40_00915 IPR032255 Helical bimodular sensor domain JO40_00915 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00915 IPR003660 HAMP domain JO40_00925 IPR036291 NAD(P)-binding domain superfamily JO40_00925 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_00925 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain JO40_00930 IPR018631 AAA-ATPase-like domain JO40_00930 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_00935 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core JO40_00935 IPR011551 NTP pyrophosphohydrolase MazG JO40_00950 IPR036621 Anticodon-binding domain superfamily JO40_00950 IPR012675 Beta-grasp domain superfamily JO40_00950 IPR004095 TGS JO40_00950 IPR012676 TGS-like JO40_00950 IPR002320 Threonine-tRNA ligase, class IIa JO40_00950 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_00950 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO40_00950 IPR004154 Anticodon-binding JO40_00950 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO40_00950 IPR033728 Threonine-tRNA ligase catalytic core domain JO40_00950 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO40_00960 IPR017861 Kae1/TsaD family JO40_00960 IPR000905 Gcp-like domain JO40_00960 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD JO40_00975 IPR018062 HTH domain AraC-type, conserved site JO40_00975 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like JO40_00975 IPR009057 Homeobox-like domain superfamily JO40_00975 IPR018060 DNA binding HTH domain, AraC-type JO40_00985 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC JO40_00985 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_00985 IPR003593 AAA+ ATPase domain JO40_00985 IPR011527 ABC transporter type 1, transmembrane domain JO40_00985 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_00985 IPR003439 ABC transporter-like JO40_00990 IPR016161 Aldehyde/histidinol dehydrogenase JO40_00990 IPR015590 Aldehyde dehydrogenase domain JO40_00990 IPR016162 Aldehyde dehydrogenase, N-terminal JO40_00990 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent JO40_00990 IPR029510 Aldehyde dehydrogenase, glutamic acid active site JO40_00990 IPR016160 Aldehyde dehydrogenase, cysteine active site JO40_00990 IPR016163 Aldehyde dehydrogenase, C-terminal JO40_00995 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_00995 IPR003682 rRNA small subunit methyltransferase G JO40_01030 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily JO40_01030 IPR009614 Toxin YoeB JO40_01040 IPR014774 KaiC-like domain JO40_01040 IPR004504 DNA repair protein RadA JO40_01040 IPR003593 AAA+ ATPase domain JO40_01040 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01040 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain JO40_01040 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_01040 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_01040 IPR041166 LapB, rubredoxin metal binding domain JO40_01045 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01045 IPR000808 Mrp, conserved site JO40_01045 IPR019591 Mrp/NBP35 ATP-binding protein JO40_01045 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 JO40_01050 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_01050 IPR018631 AAA-ATPase-like domain JO40_01060 IPR003593 AAA+ ATPase domain JO40_01060 IPR003439 ABC transporter-like JO40_01060 IPR017871 ABC transporter, conserved site JO40_01060 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01065 IPR037294 ABC transporter, BtuC-like JO40_01065 IPR000522 ABC transporter, permease protein, BtuC-like JO40_01070 IPR002491 ABC transporter periplasmic binding domain JO40_01075 IPR006395 Methylaspartate ammonia-lyase JO40_01075 IPR022662 Methylaspartate ammonia-lyase, C-terminal JO40_01075 IPR029017 Enolase-like, N-terminal JO40_01075 IPR036849 Enolase-like, C-terminal domain superfamily JO40_01075 IPR022665 Methylaspartate ammonia-lyase, N-terminal JO40_01080 IPR006396 Glutamate mutase epsilon subunit JO40_01080 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic JO40_01080 IPR014714 Glutamate mutase E subunit, C-terminal domain superfamily JO40_01085 IPR004722 Dihydroorotase JO40_01085 IPR002195 Dihydroorotase, conserved site JO40_01085 IPR032466 Metal-dependent hydrolase JO40_01085 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO40_01085 IPR006680 Amidohydrolase-related JO40_01095 IPR001650 Helicase, C-terminal JO40_01095 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site JO40_01095 IPR014014 RNA helicase, DEAD-box type, Q motif JO40_01095 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_01095 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01095 IPR030880 DEAD-box ATP-dependent RNA helicase CshA JO40_01095 IPR011545 DEAD/DEAH box helicase domain JO40_01100 IPR018089 Orotidine 5'-phosphate decarboxylase, active site JO40_01100 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 JO40_01100 IPR011060 Ribulose-phosphate binding barrel JO40_01100 IPR013785 Aldolase-type TIM barrel JO40_01100 IPR001754 Orotidine 5'-phosphate decarboxylase domain JO40_01120 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01120 IPR025302 Domain of unknown function DUF4162 JO40_01120 IPR003439 ABC transporter-like JO40_01120 IPR003593 AAA+ ATPase domain JO40_01120 IPR017871 ABC transporter, conserved site JO40_01125 IPR001932 PPM-type phosphatase domain JO40_01125 IPR036457 PPM-type phosphatase domain superfamily JO40_01125 IPR003660 HAMP domain JO40_01135 IPR005362 Uncharacterised protein family UPF0164 JO40_01140 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO40_01140 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal JO40_01140 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta JO40_01140 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily JO40_01150 IPR010186 Glycine reductase, selenoprotein B JO40_01150 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO40_01155 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO40_01155 IPR010186 Glycine reductase, selenoprotein B JO40_01160 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta JO40_01160 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta JO40_01165 IPR003828 Epoxyqueuosine reductase QueH JO40_01175 IPR022935 ATP-dependent Clp protease adaptor protein ClpS JO40_01175 IPR003769 Adaptor protein ClpS, core JO40_01175 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like JO40_01180 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01180 IPR041546 ClpA/ClpB, AAA lid domain JO40_01180 IPR028299 ClpA/B, conserved site 2 JO40_01180 IPR019489 Clp ATPase, C-terminal JO40_01180 IPR003959 ATPase, AAA-type, core JO40_01180 IPR018368 ClpA/B, conserved site 1 JO40_01180 IPR001270 ClpA/B family JO40_01180 IPR003593 AAA+ ATPase domain JO40_01180 IPR036628 Clp, N-terminal domain superfamily JO40_01180 IPR004176 Clp, N-terminal JO40_01180 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA JO40_01185 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase JO40_01185 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal JO40_01185 IPR016181 Acyl-CoA N-acyltransferase JO40_01190 IPR004254 AdipoR/Haemolysin-III-related JO40_01190 IPR005744 Hly-III JO40_01195 IPR010093 SinI-like, DNA-binding domain JO40_01195 IPR040198 Fido domain-containing protein JO40_01195 IPR003812 Fido domain JO40_01195 IPR036597 Fido-like domain superfamily JO40_01195 IPR041657 Helix-turn-helix domain, group 17 JO40_01200 IPR004815 Lon protease, bacterial/eukaryotic-type JO40_01200 IPR003959 ATPase, AAA-type, core JO40_01200 IPR027543 Lon protease, bacterial JO40_01200 IPR003593 AAA+ ATPase domain JO40_01200 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01200 IPR008269 Peptidase S16, Lon proteolytic domain JO40_01200 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_01200 IPR027065 Lon protease JO40_01200 IPR003111 Lon, substrate-binding domain JO40_01200 IPR008268 Peptidase S16, active site JO40_01200 IPR015947 PUA-like superfamily JO40_01200 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_01220 IPR028349 Protein PafC JO40_01220 IPR001034 DeoR-type HTH domain JO40_01220 IPR013196 Helix-turn-helix, type 11 JO40_01220 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_01220 IPR036390 Winged helix DNA-binding domain superfamily JO40_01220 IPR026881 WYL domain JO40_01250 IPR006690 Outer membrane protein, OmpA-like, conserved site JO40_01250 IPR006665 OmpA-like domain JO40_01250 IPR006664 Outer membrane protein, bacterial JO40_01250 IPR036737 OmpA-like domain superfamily JO40_01255 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain JO40_01255 IPR011895 Pyruvate-flavodoxin oxidoreductase JO40_01255 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II JO40_01255 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily JO40_01255 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO40_01255 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain JO40_01255 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_01255 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_01255 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding JO40_01255 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal JO40_01255 IPR029061 Thiamin diphosphate-binding fold JO40_01255 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain JO40_01260 IPR029052 Metallo-dependent phosphatase-like JO40_01260 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type JO40_01260 IPR008334 5'-Nucleotidase, C-terminal JO40_01260 IPR036907 5'-Nucleotidase, C-terminal domain superfamily JO40_01260 IPR006179 5'-Nucleotidase/apyrase JO40_01280 IPR006043 Xanthine/uracil/vitamin C permease JO40_01280 IPR006042 Xanthine/uracil permease JO40_01280 IPR029935 Uracil permease JO40_01310 IPR036849 Enolase-like, C-terminal domain superfamily JO40_01310 IPR029017 Enolase-like, N-terminal JO40_01310 IPR020811 Enolase, N-terminal JO40_01310 IPR020809 Enolase, conserved site JO40_01310 IPR000941 Enolase JO40_01310 IPR020810 Enolase, C-terminal TIM barrel domain JO40_01315 IPR000182 GNAT domain JO40_01315 IPR016181 Acyl-CoA N-acyltransferase JO40_01320 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site JO40_01320 IPR023267 RNA (C5-cytosine) methyltransferase JO40_01320 IPR011023 Nop2p JO40_01320 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain JO40_01320 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type JO40_01320 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal JO40_01320 IPR023545 rRNA small subunit methyltransferase F JO40_01320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_01325 IPR007395 Putative neutral zinc metallopeptidase JO40_01340 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_01340 IPR013216 Methyltransferase type 11 JO40_01370 IPR023861 Chloride channel, ClcA JO40_01370 IPR014743 Chloride channel, core JO40_01370 IPR001807 Chloride channel, voltage gated JO40_01375 IPR018631 AAA-ATPase-like domain JO40_01375 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_01380 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 JO40_01380 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01380 IPR005225 Small GTP-binding protein domain JO40_01380 IPR004520 tRNA modification GTPase MnmE JO40_01380 IPR006073 GTP binding domain JO40_01380 IPR031168 TrmE-type guanine nucleotide-binding domain JO40_01380 IPR018948 GTP-binding protein TrmE, N-terminal JO40_01380 IPR027368 tRNA modification GTPase MnmE domain 2 JO40_01380 IPR025867 MnmE, helical domain JO40_01385 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase JO40_01385 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily JO40_01395 IPR025682 CpXC domain JO40_01410 IPR042099 AMP-dependent synthetase-like superfamily JO40_01410 IPR000873 AMP-dependent synthetase/ligase JO40_01410 IPR020845 AMP-binding, conserved site JO40_01415 IPR041468 ParB/Spo0J, HTH domain JO40_01415 IPR036086 ParB/Sulfiredoxin superfamily JO40_01415 IPR003115 ParB/Sulfiredoxin JO40_01415 IPR004437 ParB/RepB/Spo0J partition protein JO40_01430 IPR018392 LysM domain JO40_01430 IPR013731 Opacity-associated protein A, N-terminal JO40_01430 IPR016047 Peptidase M23 JO40_01430 IPR011055 Duplicated hybrid motif JO40_01435 IPR003156 DHHA1 domain JO40_01435 IPR004610 Bacterial RecJ exonuclease JO40_01435 IPR001667 DDH domain JO40_01435 IPR038763 DHH phosphoesterase superfamily JO40_01435 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal JO40_01435 IPR041122 RecJ, OB domain JO40_01440 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase JO40_01440 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily JO40_01440 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic JO40_01440 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal JO40_01440 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily JO40_01440 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily JO40_01440 IPR017459 Glycosyl transferase family 3, N-terminal domain JO40_01440 IPR000312 Glycosyl transferase, family 3 JO40_01440 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site JO40_01445 IPR040758 Release factor glutamine methyltransferase, N-terminal domain JO40_01445 IPR004556 Methyltransferase HemK-like JO40_01445 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific JO40_01445 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_01445 IPR007848 Methyltransferase small domain JO40_01445 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_01450 IPR004373 Peptide chain release factor 1 JO40_01450 IPR005139 Peptide chain release factor JO40_01450 IPR000352 Peptide chain release factor class I JO40_01455 IPR001048 Aspartate/glutamate/uridylate kinase JO40_01455 IPR003964 Carbamate kinase JO40_01455 IPR036393 Acetylglutamate kinase-like superfamily JO40_01460 IPR002528 Multi antimicrobial extrusion protein JO40_01470 IPR001911 Ribosomal protein S21 JO40_01470 IPR018278 Ribosomal protein S21, conserved site JO40_01470 IPR038380 Ribosomal protein S21 superfamily JO40_01485 IPR001948 Peptidase M18 JO40_01485 IPR023358 Peptidase M18, domain 2 JO40_01485 IPR022984 M18 family aminopeptidase 2, putative JO40_01490 IPR020595 MnmG-related, conserved site JO40_01490 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_01490 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG JO40_01490 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related JO40_01490 IPR026904 GidA associated domain 3 JO40_01495 IPR014016 UvrD-like helicase, ATP-binding domain JO40_01495 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01495 IPR000212 DNA helicase, UvrD/REP type JO40_01495 IPR005751 ATP-dependent DNA helicase PcrA JO40_01495 IPR013986 DExx box DNA helicase domain superfamily JO40_01495 IPR014017 UvrD-like DNA helicase, C-terminal JO40_01495 IPR034739 UvrD/AddA helicase, N-terminal JO40_01515 IPR025944 Sigma-54 interaction domain, conserved site JO40_01515 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_01515 IPR003593 AAA+ ATPase domain JO40_01515 IPR003018 GAF domain JO40_01515 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO40_01515 IPR002078 RNA polymerase sigma factor 54 interaction domain JO40_01515 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01515 IPR009057 Homeobox-like domain superfamily JO40_01515 IPR029016 GAF-like domain superfamily JO40_01565 IPR005273 Uracil-DNA glycosylase family 4 JO40_01565 IPR005122 Uracil-DNA glycosylase-like JO40_01565 IPR036895 Uracil-DNA glycosylase-like domain superfamily JO40_01570 IPR041222 Primosomal protein N', 3' DNA-binding domain JO40_01570 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01570 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_01570 IPR011545 DEAD/DEAH box helicase domain JO40_01570 IPR005259 Primosomal protein N' JO40_01570 IPR001650 Helicase, C-terminal JO40_01570 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily JO40_01570 IPR041236 Primosomal protein N, C-terminal domain JO40_01570 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain JO40_01575 IPR002606 Riboflavin kinase, bacterial JO40_01575 IPR023468 Riboflavin kinase JO40_01575 IPR015864 FAD synthetase JO40_01575 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_01575 IPR023465 Riboflavin kinase domain superfamily JO40_01575 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic JO40_01580 IPR009068 S15/NS1, RNA-binding JO40_01580 IPR005290 Ribosomal protein S15, bacterial-type JO40_01580 IPR000589 Ribosomal protein S15 JO40_01585 IPR022967 RNA-binding domain, S1 JO40_01585 IPR003029 S1 domain JO40_01585 IPR001247 Exoribonuclease, phosphorolytic domain 1 JO40_01585 IPR015847 Exoribonuclease, phosphorolytic domain 2 JO40_01585 IPR036345 Exoribonuclease, PH domain 2 superfamily JO40_01585 IPR004088 K Homology domain, type 1 JO40_01585 IPR027408 PNPase/RNase PH domain superfamily JO40_01585 IPR012162 Polyribonucleotide nucleotidyltransferase JO40_01585 IPR012340 Nucleic acid-binding, OB-fold JO40_01585 IPR036612 K Homology domain, type 1 superfamily JO40_01585 IPR004087 K Homology domain JO40_01585 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_01585 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain JO40_01590 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase JO40_01590 IPR036157 dUTPase-like superfamily JO40_01590 IPR033704 dUTPase, trimeric JO40_01590 IPR029054 dUTPase-like JO40_01605 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_01605 IPR036986 RNA-binding S4 domain superfamily JO40_01605 IPR002942 RNA-binding S4 domain JO40_01605 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_01605 IPR006225 Pseudouridine synthase, RluC/RluD JO40_01605 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO40_01610 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_01610 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site JO40_01610 IPR004839 Aminotransferase, class I/classII JO40_01610 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type JO40_01610 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type JO40_01610 IPR015424 Pyridoxal phosphate-dependent transferase JO40_01610 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_01640 IPR039421 Type I protein exporter JO40_01640 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01640 IPR011917 ABC transporter, lipid A export, MsbA JO40_01640 IPR017871 ABC transporter, conserved site JO40_01640 IPR003439 ABC transporter-like JO40_01640 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_01640 IPR011527 ABC transporter type 1, transmembrane domain JO40_01640 IPR003593 AAA+ ATPase domain JO40_01655 IPR029144 Threonine synthase, N-terminal JO40_01655 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site JO40_01655 IPR037158 Threonine synthase, N-terminal domain superfamily JO40_01655 IPR004450 Threonine synthase-like JO40_01655 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme JO40_01655 IPR001926 Pyridoxal-phosphate dependent enzyme JO40_01660 IPR042215 CarD-like, C-terminal domain JO40_01660 IPR003711 CarD-like/TRCF domain JO40_01660 IPR036101 CarD-like/TRCF domain superfamily JO40_01665 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase JO40_01665 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site JO40_01665 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily JO40_01665 IPR029044 Nucleotide-diphospho-sugar transferases JO40_01665 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site JO40_01665 IPR034683 Cytidylyltransferase IspD/TarI JO40_01670 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site JO40_01670 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily JO40_01670 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase JO40_01695 IPR019539 Galactokinase galactose-binding domain JO40_01695 IPR000705 Galactokinase JO40_01695 IPR036554 GHMP kinase, C-terminal domain superfamily JO40_01695 IPR006206 Mevalonate/galactokinase JO40_01695 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_01695 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_01695 IPR013750 GHMP kinase, C-terminal domain JO40_01700 IPR036526 Carbon-nitrogen hydrolase superfamily JO40_01700 IPR004563 Apolipoprotein N-acyltransferase JO40_01700 IPR003010 Carbon-nitrogen hydrolase JO40_01705 IPR001940 Peptidase S1C JO40_01705 IPR009003 Peptidase S1, PA clan JO40_01705 IPR011782 Peptidase S1C, Do JO40_01705 IPR036034 PDZ superfamily JO40_01705 IPR001478 PDZ domain JO40_01715 IPR011006 CheY-like superfamily JO40_01715 IPR003607 HD/PDEase domain JO40_01715 IPR037522 HD-GYP domain JO40_01715 IPR001789 Signal transduction response regulator, receiver domain JO40_01735 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_01735 IPR002317 Serine-tRNA ligase, type1 JO40_01735 IPR015866 Serine-tRNA synthetase, type1, N-terminal JO40_01735 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm JO40_01735 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily JO40_01735 IPR033729 Serine-tRNA ligase catalytic core domain JO40_01735 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO40_01750 IPR001650 Helicase, C-terminal JO40_01750 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01750 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_01750 IPR018973 DEAD/DEAH-box helicase, putative JO40_01750 IPR011545 DEAD/DEAH box helicase domain JO40_01765 IPR033828 CTP synthase GATase domain JO40_01765 IPR017926 Glutamine amidotransferase JO40_01765 IPR017456 CTP synthase, N-terminal JO40_01765 IPR004468 CTP synthase JO40_01765 IPR029062 Class I glutamine amidotransferase-like JO40_01765 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01780 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_01795 IPR001608 Alanine racemase, N-terminal JO40_01795 IPR011078 Pyridoxal phosphate homeostasis protein JO40_01795 IPR029066 PLP-binding barrel JO40_01820 IPR003593 AAA+ ATPase domain JO40_01820 IPR017871 ABC transporter, conserved site JO40_01820 IPR025302 Domain of unknown function DUF4162 JO40_01820 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA JO40_01820 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01820 IPR003439 ABC transporter-like JO40_01835 IPR001972 Stomatin family JO40_01835 IPR001107 Band 7 domain JO40_01835 IPR018080 Band 7/stomatin-like, conserved site JO40_01835 IPR036013 Band 7/SPFH domain superfamily JO40_01840 IPR001972 Stomatin family JO40_01840 IPR001107 Band 7 domain JO40_01840 IPR036013 Band 7/SPFH domain superfamily JO40_01840 IPR018080 Band 7/stomatin-like, conserved site JO40_01855 IPR011527 ABC transporter type 1, transmembrane domain JO40_01855 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_01855 IPR003439 ABC transporter-like JO40_01855 IPR017871 ABC transporter, conserved site JO40_01855 IPR011917 ABC transporter, lipid A export, MsbA JO40_01855 IPR003593 AAA+ ATPase domain JO40_01855 IPR039421 Type I protein exporter JO40_01855 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01860 IPR003593 AAA+ ATPase domain JO40_01860 IPR003439 ABC transporter-like JO40_01860 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01860 IPR017871 ABC transporter, conserved site JO40_01865 IPR014362 Glutamate dehydrogenase JO40_01865 IPR036291 NAD(P)-binding domain superfamily JO40_01865 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal JO40_01865 IPR033922 NAD(P) binding domain of glutamate dehydrogenase JO40_01865 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase JO40_01865 IPR033524 Leu/Phe/Val dehydrogenases active site JO40_01865 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain JO40_01885 IPR037171 NagB/RpiA transferase-like JO40_01885 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily JO40_01885 IPR002698 5-formyltetrahydrofolate cyclo-ligase JO40_01895 IPR026569 Ribosomal protein L28/L24 JO40_01895 IPR001383 Ribosomal protein L28 JO40_01895 IPR037147 Ribosomal protein L28/L24 superfamily JO40_01895 IPR034704 L28p-like JO40_01905 IPR003439 ABC transporter-like JO40_01905 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_01905 IPR017871 ABC transporter, conserved site JO40_01905 IPR003593 AAA+ ATPase domain JO40_01905 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_01925 IPR035906 MetI-like superfamily JO40_01925 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_01935 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative JO40_01935 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp JO40_01935 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_01940 IPR003667 NqrDE/RnfAE JO40_01940 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA JO40_01945 IPR010968 Ion-translocating oxidoreductase complex subunit E JO40_01945 IPR003667 NqrDE/RnfAE JO40_01955 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD JO40_01955 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D JO40_01960 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC JO40_01960 IPR019554 Soluble ligand binding domain JO40_01960 IPR026902 RnfC Barrel sandwich hybrid domain JO40_01960 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily JO40_01960 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain JO40_01960 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_01960 IPR009051 Alpha-helical ferredoxin JO40_01960 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_01970 IPR002035 von Willebrand factor, type A JO40_01970 IPR036465 von Willebrand factor A-like domain superfamily JO40_01985 IPR036637 Phosphohistidine domain superfamily JO40_01985 IPR000121 PEP-utilising enzyme, C-terminal JO40_01985 IPR023151 PEP-utilising enzyme, conserved site JO40_01985 IPR040442 Pyruvate kinase-like domain superfamily JO40_01985 IPR010121 Pyruvate, phosphate dikinase JO40_01985 IPR013815 ATP-grasp fold, subdomain 1 JO40_01985 IPR008279 PEP-utilising enzyme, mobile domain JO40_01985 IPR018274 PEP-utilising enzyme, active site JO40_01985 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_01995 IPR032533 Protein of unknown function DUF4954 JO40_01995 IPR011004 Trimeric LpxA-like superfamily JO40_02010 IPR033479 Double Cache domain 1 JO40_02010 IPR000727 Target SNARE coiled-coil homology domain JO40_02010 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02010 IPR029151 Periplasmic sensor-like domain superfamily JO40_02010 IPR003660 HAMP domain JO40_02020 IPR005822 Ribosomal protein L13 JO40_02020 IPR005823 Ribosomal protein L13, bacterial-type JO40_02020 IPR023563 Ribosomal protein L13, conserved site JO40_02020 IPR036899 Ribosomal protein L13 superfamily JO40_02025 IPR020574 Ribosomal protein S9, conserved site JO40_02025 IPR023035 Ribosomal protein S9, bacterial/plastid JO40_02025 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_02025 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_02025 IPR000754 Ribosomal protein S9 JO40_02030 IPR003783 Regulatory protein RecX JO40_02030 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_02035 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_02035 IPR011006 CheY-like superfamily JO40_02035 IPR016032 Signal transduction response regulator, C-terminal effector JO40_02035 IPR000792 Transcription regulator LuxR, C-terminal JO40_02035 IPR001789 Signal transduction response regulator, receiver domain JO40_02060 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_02060 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F JO40_02060 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site JO40_02060 IPR036986 RNA-binding S4 domain superfamily JO40_02060 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_02060 IPR002942 RNA-binding S4 domain JO40_02060 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain JO40_02065 IPR036986 RNA-binding S4 domain superfamily JO40_02065 IPR002307 Tyrosine-tRNA ligase JO40_02065 IPR002942 RNA-binding S4 domain JO40_02065 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_02065 IPR002305 Aminoacyl-tRNA synthetase, class Ic JO40_02065 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_02065 IPR024088 Tyrosine-tRNA ligase, bacterial-type JO40_02065 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 JO40_02070 IPR001697 Pyruvate kinase JO40_02070 IPR036637 Phosphohistidine domain superfamily JO40_02070 IPR015806 Pyruvate kinase, insert domain superfamily JO40_02070 IPR008279 PEP-utilising enzyme, mobile domain JO40_02070 IPR015795 Pyruvate kinase, C-terminal JO40_02070 IPR036918 Pyruvate kinase, C-terminal domain superfamily JO40_02070 IPR011037 Pyruvate kinase-like, insert domain superfamily JO40_02070 IPR040442 Pyruvate kinase-like domain superfamily JO40_02070 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_02070 IPR015793 Pyruvate kinase, barrel JO40_02115 IPR003740 Uncharacterised membrane protein YitT JO40_02115 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal JO40_02115 IPR019264 Domain of unknown function DUF2179 JO40_02135 IPR016154 Heat shock protein Hsp33, C-terminal JO40_02135 IPR000397 Heat shock protein Hsp33 JO40_02135 IPR016153 Heat shock protein Hsp33, N-terminal JO40_02140 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC JO40_02140 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily JO40_02145 IPR023553 Uncharacterised methyltransferase, YrrT JO40_02145 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_02145 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal JO40_02145 IPR041698 Methyltransferase domain 25 JO40_02155 IPR030395 Glycerophosphodiester phosphodiesterase domain JO40_02155 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily JO40_02165 IPR001792 Acylphosphatase-like domain JO40_02165 IPR036046 Acylphosphatase-like domain superfamily JO40_02165 IPR017968 Acylphosphatase, conserved site JO40_02165 IPR020456 Acylphosphatase JO40_02190 IPR036373 Ribosomal protein L17 superfamily JO40_02190 IPR000456 Ribosomal protein L17 JO40_02195 IPR036643 DNA-directed RNA polymerase, insert domain superfamily JO40_02195 IPR011260 RNA polymerase, alpha subunit, C-terminal JO40_02195 IPR036603 RNA polymerase, RBP11-like subunit JO40_02195 IPR011773 DNA-directed RNA polymerase, alpha subunit JO40_02195 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type JO40_02195 IPR011262 DNA-directed RNA polymerase, insert domain JO40_02200 IPR018102 Ribosomal S11, conserved site JO40_02200 IPR001971 Ribosomal protein S11 JO40_02200 IPR036967 Ribosomal protein S11 superfamily JO40_02200 IPR019981 Ribosomal protein S11, bacterial-type JO40_02205 IPR018269 Ribosomal protein S13, conserved site JO40_02205 IPR027437 30s ribosomal protein S13, C-terminal JO40_02205 IPR001892 Ribosomal protein S13 JO40_02205 IPR019980 Ribosomal protein S13, bacterial-type JO40_02205 IPR010979 Ribosomal protein S13-like, H2TH JO40_02210 IPR026593 Protein translocase subunit SecY JO40_02210 IPR030659 SecY conserved site JO40_02210 IPR023201 SecY domain superfamily JO40_02210 IPR002208 SecY/SEC61-alpha family JO40_02215 IPR021131 Ribosomal protein L18e/L15P JO40_02215 IPR001196 Ribosomal protein L15, conserved site JO40_02215 IPR005749 Ribosomal protein L15, bacterial-type JO40_02215 IPR030878 Ribosomal protein L15 JO40_02215 IPR036227 Ribosomal L18e/L15P superfamily JO40_02220 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain JO40_02220 IPR018038 Ribosomal protein L30, conserved site JO40_02220 IPR005996 Ribosomal protein L30, bacterial-type JO40_02220 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily JO40_02225 IPR018192 Ribosomal protein S5, N-terminal, conserved site JO40_02225 IPR000851 Ribosomal protein S5 JO40_02225 IPR005712 Ribosomal protein S5, bacterial-type JO40_02225 IPR005324 Ribosomal protein S5, C-terminal JO40_02225 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_02225 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_02225 IPR013810 Ribosomal protein S5, N-terminal JO40_02230 IPR005484 Ribosomal protein L18 JO40_02230 IPR004389 Ribosomal protein L18, bacterial-type JO40_02235 IPR020040 Ribosomal protein L6, alpha-beta domain JO40_02235 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily JO40_02235 IPR019906 Ribosomal protein L6, bacterial-type JO40_02235 IPR002358 Ribosomal protein L6, conserved site JO40_02235 IPR000702 Ribosomal protein L6 JO40_02240 IPR000630 Ribosomal protein S8 JO40_02240 IPR035987 Ribosomal protein S8 superfamily JO40_02245 IPR031309 Ribosomal protein L5, C-terminal JO40_02245 IPR022803 Ribosomal protein L5 domain superfamily JO40_02245 IPR020929 Ribosomal protein L5, conserved site JO40_02245 IPR031310 Ribosomal protein L5, N-terminal JO40_02245 IPR002132 Ribosomal protein L5 JO40_02245 IPR020930 Ribosomal protein L5, bacterial-type JO40_02250 IPR014722 Ribosomal protein L2, domain 2 JO40_02250 IPR003256 Ribosomal protein L24 JO40_02250 IPR041988 Ribosomal Protein L26/L24, KOW domain JO40_02250 IPR005825 Ribosomal protein L24/L26, conserved site JO40_02250 IPR008991 Translation protein SH3-like domain superfamily JO40_02250 IPR005824 KOW JO40_02255 IPR000218 Ribosomal protein L14P JO40_02255 IPR005745 Ribosomal protein L14P, bacterial-type JO40_02255 IPR019972 Ribosomal protein L14P, conserved site JO40_02255 IPR036853 Ribosomal protein L14 superfamily JO40_02260 IPR019979 Ribosomal protein S17, conserved site JO40_02260 IPR000266 Ribosomal protein S17/S11 JO40_02260 IPR019984 30S ribosomal protein S17 JO40_02260 IPR012340 Nucleic acid-binding, OB-fold JO40_02265 IPR001854 Ribosomal protein L29/L35 JO40_02265 IPR036049 Ribosomal protein L29/L35 superfamily JO40_02270 IPR036920 Ribosomal protein L10e/L16 superfamily JO40_02270 IPR000114 Ribosomal protein L16 JO40_02270 IPR016180 Ribosomal protein L10e/L16 JO40_02270 IPR020798 Ribosomal protein L16, conserved site JO40_02275 IPR036419 Ribosomal protein S3, C-terminal domain superfamily JO40_02275 IPR009019 K homology domain superfamily, prokaryotic type JO40_02275 IPR004044 K Homology domain, type 2 JO40_02275 IPR015946 K homology domain-like, alpha/beta JO40_02275 IPR004087 K Homology domain JO40_02275 IPR005704 Ribosomal protein S3, bacterial-type JO40_02275 IPR001351 Ribosomal protein S3, C-terminal JO40_02275 IPR018280 Ribosomal protein S3, conserved site JO40_02280 IPR001063 Ribosomal protein L22/L17 JO40_02280 IPR036394 Ribosomal protein L22/L17 superfamily JO40_02280 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type JO40_02280 IPR018260 Ribosomal protein L22/L17, conserved site JO40_02285 IPR002222 Ribosomal protein S19/S15 JO40_02285 IPR005732 Ribosomal protein S19, bacterial-type JO40_02285 IPR020934 Ribosomal protein S19 conserved site JO40_02285 IPR023575 Ribosomal protein S19, superfamily JO40_02290 IPR005880 Ribosomal protein L2, bacterial/organellar-type JO40_02290 IPR008991 Translation protein SH3-like domain superfamily JO40_02290 IPR022669 Ribosomal protein L2, C-terminal JO40_02290 IPR022666 Ribosomal Proteins L2, RNA binding domain JO40_02290 IPR012340 Nucleic acid-binding, OB-fold JO40_02290 IPR014726 Ribosomal protein L2, domain 3 JO40_02290 IPR002171 Ribosomal protein L2 JO40_02290 IPR014722 Ribosomal protein L2, domain 2 JO40_02295 IPR013025 Ribosomal protein L25/L23 JO40_02295 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily JO40_02295 IPR012678 Ribosomal protein L23/L15e core domain superfamily JO40_02295 IPR001014 Ribosomal protein L23/L25, conserved site JO40_02300 IPR013005 50S ribosomal protein uL4 JO40_02300 IPR023574 Ribosomal protein L4 domain superfamily JO40_02300 IPR002136 Ribosomal protein L4/L1e JO40_02305 IPR019927 Ribosomal protein L3, bacterial/organelle-type JO40_02305 IPR019926 Ribosomal protein L3, conserved site JO40_02305 IPR009000 Translation protein, beta-barrel domain superfamily JO40_02305 IPR000597 Ribosomal protein L3 JO40_02310 IPR036838 Ribosomal protein S10 domain superfamily JO40_02310 IPR001848 Ribosomal protein S10 JO40_02310 IPR018268 Ribosomal protein S10, conserved site JO40_02310 IPR027486 Ribosomal protein S10 domain JO40_02315 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle JO40_02315 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain JO40_02315 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal JO40_02315 IPR000795 Transcription factor, GTP-binding domain JO40_02315 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal JO40_02315 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02315 IPR031157 Tr-type G domain, conserved site JO40_02315 IPR033720 Elongation factor Tu, domain 2 JO40_02315 IPR004161 Translation elongation factor EFTu-like, domain 2 JO40_02315 IPR009000 Translation protein, beta-barrel domain superfamily JO40_02315 IPR005225 Small GTP-binding protein domain JO40_02340 IPR001650 Helicase, C-terminal JO40_02340 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_02340 IPR012340 Nucleic acid-binding, OB-fold JO40_02340 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02340 IPR033454 RecG, wedge domain JO40_02340 IPR011545 DEAD/DEAH box helicase domain JO40_02340 IPR004609 ATP-dependent DNA helicase RecG JO40_02365 IPR005322 Peptidase C69, dipeptidase A JO40_02370 IPR003660 HAMP domain JO40_02370 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain JO40_02370 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02370 IPR004090 Chemotaxis methyl-accepting receptor JO40_02375 IPR001270 ClpA/B family JO40_02375 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal JO40_02375 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02375 IPR012763 DNA polymerase III, subunit gamma/ tau JO40_02375 IPR022754 DNA polymerase III, gamma subunit, domain III JO40_02375 IPR003593 AAA+ ATPase domain JO40_02380 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO40_02380 IPR002942 RNA-binding S4 domain JO40_02380 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_02380 IPR006225 Pseudouridine synthase, RluC/RluD JO40_02380 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_02380 IPR036986 RNA-binding S4 domain superfamily JO40_02390 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02390 IPR006073 GTP binding domain JO40_02390 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC JO40_02390 IPR030393 EngB-type guanine nucleotide-binding (G) domain JO40_02395 IPR035482 Phosphoglucose isomerase, SIS domain 2 JO40_02395 IPR001672 Phosphoglucose isomerase (PGI) JO40_02395 IPR018189 Phosphoglucose isomerase, conserved site JO40_02395 IPR023096 Phosphoglucose isomerase, C-terminal JO40_02395 IPR035476 Phosphoglucose isomerase, SIS domain 1 JO40_02400 IPR022983 M18 family aminopeptidase 1, putative JO40_02400 IPR001948 Peptidase M18 JO40_02400 IPR023358 Peptidase M18, domain 2 JO40_02405 IPR001763 Rhodanese-like domain JO40_02405 IPR036873 Rhodanese-like domain superfamily JO40_02410 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily JO40_02410 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain JO40_02415 IPR036259 MFS transporter superfamily JO40_02415 IPR039672 Lactose permease-like JO40_02415 IPR018043 Sodium:galactoside symporter, conserved site JO40_02415 IPR001927 Sodium:galactoside symporter JO40_02440 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes JO40_02440 IPR004679 2-hydroxycarboxylate transporter JO40_02465 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02465 IPR010230 FeS cluster assembly SUF system, ATPase SufC JO40_02465 IPR003593 AAA+ ATPase domain JO40_02465 IPR017871 ABC transporter, conserved site JO40_02465 IPR003439 ABC transporter-like JO40_02470 IPR010231 SUF system FeS cluster assembly, SufB JO40_02470 IPR037284 SUF system FeS cluster assembly, SufBD superfamily JO40_02470 IPR000825 SUF system FeS cluster assembly, SufBD JO40_02480 IPR004131 Pyrophosphate-energised proton pump JO40_02500 IPR035909 Methylesterase CheB, C-terminal JO40_02500 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type JO40_02500 IPR011006 CheY-like superfamily JO40_02500 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase JO40_02500 IPR001789 Signal transduction response regulator, receiver domain JO40_02505 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal JO40_02505 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily JO40_02505 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal JO40_02505 IPR000780 MCP methyltransferase, CheR-type JO40_02505 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_02505 IPR026024 Chemotaxis protein methyltransferase CheR JO40_02520 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02520 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal JO40_02520 IPR017871 ABC transporter, conserved site JO40_02520 IPR030921 LPS export ABC transporter, ATP-binding protein LptB JO40_02520 IPR003439 ABC transporter-like JO40_02520 IPR003593 AAA+ ATPase domain JO40_02525 IPR018171 Peptidyl-tRNA hydrolase, conserved site JO40_02525 IPR001328 Peptidyl-tRNA hydrolase JO40_02525 IPR036416 Peptidyl-tRNA hydrolase superfamily JO40_02535 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta JO40_02535 IPR036968 Enolpyruvate transferase domain superfamily JO40_02535 IPR001986 Enolpyruvate transferase domain JO40_02535 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase JO40_02540 IPR000727 Target SNARE coiled-coil homology domain JO40_02540 IPR033479 Double Cache domain 1 JO40_02540 IPR003660 HAMP domain JO40_02540 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02540 IPR029151 Periplasmic sensor-like domain superfamily JO40_02545 IPR035906 MetI-like superfamily JO40_02545 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_02550 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO40_02550 IPR035906 MetI-like superfamily JO40_02550 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_02555 IPR017871 ABC transporter, conserved site JO40_02555 IPR003593 AAA+ ATPase domain JO40_02555 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_02555 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02555 IPR003439 ABC transporter-like JO40_02560 IPR017871 ABC transporter, conserved site JO40_02560 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02560 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_02560 IPR003593 AAA+ ATPase domain JO40_02560 IPR003439 ABC transporter-like JO40_02565 IPR002524 Cation efflux protein JO40_02565 IPR036837 Cation efflux protein, cytoplasmic domain superfamily JO40_02565 IPR027469 Cation efflux transmembrane domain superfamily JO40_02565 IPR027470 Cation efflux protein, cytoplasmic domain JO40_02570 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily JO40_02570 IPR003709 Peptidase M15B JO40_02590 IPR018253 DnaJ domain, conserved site JO40_02590 IPR001623 DnaJ domain JO40_02590 IPR002939 Chaperone DnaJ, C-terminal JO40_02590 IPR012724 Chaperone DnaJ JO40_02590 IPR008971 HSP40/DnaJ peptide-binding JO40_02590 IPR036869 Chaperone J-domain superfamily JO40_02590 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO40_02590 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO40_02595 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily JO40_02595 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily JO40_02595 IPR013126 Heat shock protein 70 family JO40_02595 IPR012725 Chaperone DnaK JO40_02595 IPR018181 Heat shock protein 70, conserved site JO40_02600 IPR000740 GrpE nucleotide exchange factor JO40_02600 IPR013805 GrpE nucleotide exchange factor, coiled-coil JO40_02600 IPR009012 GrpE nucleotide exchange factor, head JO40_02605 IPR005532 Sulfatase-modifying factor enzyme JO40_02605 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_02605 IPR016187 C-type lectin fold JO40_02615 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_02615 IPR005532 Sulfatase-modifying factor enzyme JO40_02615 IPR016187 C-type lectin fold JO40_02620 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_02620 IPR005532 Sulfatase-modifying factor enzyme JO40_02620 IPR016187 C-type lectin fold JO40_02630 IPR003439 ABC transporter-like JO40_02630 IPR003593 AAA+ ATPase domain JO40_02630 IPR017871 ABC transporter, conserved site JO40_02630 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02635 IPR003723 Precorrin-6x reductase JO40_02640 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site JO40_02640 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain JO40_02640 IPR014776 Tetrapyrrole methylase, subdomain 2 JO40_02640 IPR014777 Tetrapyrrole methylase, subdomain 1 JO40_02640 IPR006363 Precorrin-3B C17-methyltransferase domain JO40_02640 IPR035996 Tetrapyrrole methylase superfamily JO40_02640 IPR000878 Tetrapyrrole methylase JO40_02645 IPR018631 AAA-ATPase-like domain JO40_02645 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_02660 IPR002528 Multi antimicrobial extrusion protein JO40_02670 IPR000727 Target SNARE coiled-coil homology domain JO40_02670 IPR029151 Periplasmic sensor-like domain superfamily JO40_02670 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02670 IPR003660 HAMP domain JO40_02670 IPR004090 Chemotaxis methyl-accepting receptor JO40_02670 IPR033479 Double Cache domain 1 JO40_02675 IPR002750 CobE/GbiG C-terminal domain JO40_02675 IPR021745 Cobalamin biosynthesis central region JO40_02675 IPR036518 CobE/GbiG C-terminal domain superfamily JO40_02675 IPR021744 Cobalamin synthesis G, N-terminal JO40_02675 IPR038029 GbiG N-terminal domain superfamily JO40_02680 IPR000878 Tetrapyrrole methylase JO40_02680 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site JO40_02680 IPR035996 Tetrapyrrole methylase superfamily JO40_02680 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase JO40_02680 IPR014777 Tetrapyrrole methylase, subdomain 1 JO40_02680 IPR014776 Tetrapyrrole methylase, subdomain 2 JO40_02685 IPR025669 AAA domain JO40_02685 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02710 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 JO40_02710 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_02710 IPR016039 Thiolase-like JO40_02710 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal JO40_02715 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type JO40_02715 IPR024925 Malonyl CoA-acyl carrier protein transacylase JO40_02715 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase JO40_02715 IPR014043 Acyl transferase JO40_02715 IPR001227 Acyl transferase domain superfamily JO40_02715 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding JO40_02730 IPR020904 Short-chain dehydrogenase/reductase, conserved site JO40_02730 IPR036291 NAD(P)-binding domain superfamily JO40_02730 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase JO40_02730 IPR002347 Short-chain dehydrogenase/reductase SDR JO40_02735 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_02735 IPR003356 DNA methylase, adenine-specific JO40_02735 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_02745 IPR024906 Enoyl reductase FAD binding domain JO40_02745 IPR010758 Trans-2-enoyl-CoA reductase JO40_02745 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative JO40_02755 IPR033454 RecG, wedge domain JO40_02755 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain JO40_02755 IPR038475 RecG, C-terminal domain superfamily JO40_02755 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_02755 IPR012340 Nucleic acid-binding, OB-fold JO40_02755 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02755 IPR011545 DEAD/DEAH box helicase domain JO40_02770 IPR001249 Acetyl-CoA biotin carboxyl carrier JO40_02770 IPR001882 Biotin-binding site JO40_02770 IPR000089 Biotin/lipoyl attachment JO40_02770 IPR011053 Single hybrid motif JO40_02775 IPR011764 Biotin carboxylation domain JO40_02775 IPR011761 ATP-grasp fold JO40_02775 IPR005481 Biotin carboxylase-like, N-terminal domain JO40_02775 IPR013815 ATP-grasp fold, subdomain 1 JO40_02775 IPR005482 Biotin carboxylase, C-terminal JO40_02775 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain JO40_02775 IPR016185 Pre-ATP-grasp domain superfamily JO40_02775 IPR011054 Rudiment single hybrid motif JO40_02775 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase JO40_02780 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal JO40_02780 IPR029045 ClpP/crotonase-like domain superfamily JO40_02780 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit JO40_02780 IPR034733 Acetyl-CoA carboxylase JO40_02785 IPR001095 Acetyl-CoA carboxylase, alpha subunit JO40_02785 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal JO40_02785 IPR029045 ClpP/crotonase-like domain superfamily JO40_02790 IPR001106 Aromatic amino acid lyase JO40_02790 IPR024083 Fumarase/histidase, N-terminal JO40_02790 IPR008948 L-Aspartase-like JO40_02790 IPR022313 Phenylalanine/histidine ammonia-lyases, active site JO40_02790 IPR005921 Histidine ammonia-lyase JO40_02810 IPR011703 ATPase, AAA-3 JO40_02810 IPR041628 ChlI/MoxR, AAA lid domain JO40_02810 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_02855 IPR020556 Amidase, conserved site JO40_02855 IPR036928 Amidase signature (AS) superfamily JO40_02855 IPR000120 Amidase JO40_02855 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit JO40_02855 IPR023631 Amidase signature domain JO40_02860 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site JO40_02860 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 JO40_02860 IPR018027 Asn/Gln amidotransferase JO40_02860 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain JO40_02860 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 JO40_02860 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like JO40_02860 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E JO40_02860 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic JO40_02860 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit JO40_02960 IPR000073 Alpha/beta hydrolase fold-1 JO40_02960 IPR029058 Alpha/Beta hydrolase fold JO40_03010 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03010 IPR003439 ABC transporter-like JO40_03010 IPR003593 AAA+ ATPase domain JO40_03010 IPR017871 ABC transporter, conserved site JO40_03145 IPR001387 Cro/C1-type helix-turn-helix domain JO40_03145 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO40_03145 IPR017507 Transcription regulator, HipB-like JO40_03155 IPR012893 HipA-like, C-terminal JO40_03190 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF JO40_03190 IPR003680 Flavodoxin-like fold JO40_03190 IPR029039 Flavoprotein-like superfamily JO40_03210 IPR039421 Type I protein exporter JO40_03210 IPR003593 AAA+ ATPase domain JO40_03210 IPR011527 ABC transporter type 1, transmembrane domain JO40_03210 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03210 IPR003439 ABC transporter-like JO40_03210 IPR017871 ABC transporter, conserved site JO40_03210 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03210 IPR011917 ABC transporter, lipid A export, MsbA JO40_03215 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO40_03215 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03215 IPR003439 ABC transporter-like JO40_03215 IPR017871 ABC transporter, conserved site JO40_03215 IPR013113 FAD-binding 9, siderophore-interacting JO40_03215 IPR017927 FAD-binding domain, ferredoxin reductase-type JO40_03215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03215 IPR017938 Riboflavin synthase-like beta-barrel JO40_03215 IPR007037 Siderophore-interacting protein, C-terminal domain JO40_03215 IPR011527 ABC transporter type 1, transmembrane domain JO40_03215 IPR003593 AAA+ ATPase domain JO40_03260 IPR000073 Alpha/beta hydrolase fold-1 JO40_03260 IPR002410 Peptidase S33 JO40_03260 IPR005944 Proline iminopeptidase JO40_03260 IPR029058 Alpha/Beta hydrolase fold JO40_03280 IPR003593 AAA+ ATPase domain JO40_03280 IPR011527 ABC transporter type 1, transmembrane domain JO40_03280 IPR039421 Type I protein exporter JO40_03280 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03280 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03280 IPR003439 ABC transporter-like JO40_03280 IPR017871 ABC transporter, conserved site JO40_03285 IPR011527 ABC transporter type 1, transmembrane domain JO40_03285 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03285 IPR003593 AAA+ ATPase domain JO40_03285 IPR039421 Type I protein exporter JO40_03285 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03285 IPR017871 ABC transporter, conserved site JO40_03285 IPR003439 ABC transporter-like JO40_03290 IPR002505 Phosphate acetyl/butaryl transferase JO40_03290 IPR042112 Phosphate acetyltransferase, domain 2 JO40_03290 IPR042113 Phosphate acetyltransferase, domain 1 JO40_03290 IPR004614 Phosphate acetyltransferase JO40_03290 IPR012147 Phosphate acetyl/butyryltransferase JO40_03295 IPR019734 Tetratricopeptide repeat JO40_03295 IPR013026 Tetratricopeptide repeat-containing domain JO40_03295 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_03300 IPR040982 DNA polymerase III alpha subunit finger domain JO40_03300 IPR029460 DNA polymerase, helix-hairpin-helix motif JO40_03300 IPR004013 PHP domain JO40_03300 IPR003141 Polymerase/histidinol phosphatase, N-terminal JO40_03300 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain JO40_03300 IPR004805 DNA polymerase III, alpha subunit JO40_03300 IPR016195 Polymerase/histidinol phosphatase-like JO40_03300 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain JO40_03310 IPR035196 Protein of unknown function DUF5312 JO40_03325 IPR013647 Oligopeptidase F, N-terminal domain JO40_03325 IPR042088 Oligoendopeptidase F, C-terminal domain JO40_03325 IPR001567 Peptidase M3A/M3B catalytic domain JO40_03325 IPR004438 Peptidase M3B, oligoendopeptidase F JO40_03335 IPR036597 Fido-like domain superfamily JO40_03335 IPR003812 Fido domain JO40_03335 IPR041657 Helix-turn-helix domain, group 17 JO40_03335 IPR010093 SinI-like, DNA-binding domain JO40_03335 IPR040198 Fido domain-containing protein JO40_03345 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal JO40_03345 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC JO40_03345 IPR008471 MnmC-like methyltransferase JO40_03345 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_03345 IPR006076 FAD dependent oxidoreductase JO40_03350 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily JO40_03350 IPR007419 BFD-like [2Fe-2S]-binding domain JO40_03350 IPR023753 FAD/NAD(P)-binding domain JO40_03350 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B JO40_03350 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_03365 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_03365 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response JO40_03365 IPR011006 CheY-like superfamily JO40_03365 IPR001867 OmpR/PhoB-type DNA-binding domain JO40_03365 IPR039420 Transcriptional regulatory protein WalR-like JO40_03365 IPR001789 Signal transduction response regulator, receiver domain JO40_03380 IPR015854 ABC transporter, lipoprotein release, LolD JO40_03380 IPR003439 ABC transporter-like JO40_03380 IPR003593 AAA+ ATPase domain JO40_03380 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03380 IPR017871 ABC transporter, conserved site JO40_03390 IPR004562 Lipoyltransferase/lipoate-protein ligase JO40_03390 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain JO40_03390 IPR019491 Lipoate protein ligase, C-terminal JO40_03400 IPR003593 AAA+ ATPase domain JO40_03400 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03400 IPR003439 ABC transporter-like JO40_03405 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_03405 IPR004839 Aminotransferase, class I/classII JO40_03405 IPR000524 Transcription regulator HTH, GntR JO40_03405 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_03405 IPR036390 Winged helix DNA-binding domain superfamily JO40_03405 IPR015424 Pyridoxal phosphate-dependent transferase JO40_03405 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_03440 IPR010388 Anaerobic cobalt chelatase JO40_03445 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site JO40_03445 IPR035996 Tetrapyrrole methylase superfamily JO40_03445 IPR006364 Precorrin-2 C(20)-methyltransferase domain JO40_03445 IPR000878 Tetrapyrrole methylase JO40_03445 IPR014777 Tetrapyrrole methylase, subdomain 1 JO40_03445 IPR012382 Precorrin-2 C(20)-methyltransferase JO40_03445 IPR014776 Tetrapyrrole methylase, subdomain 2 JO40_03450 IPR029062 Class I glutamine amidotransferase-like JO40_03450 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA JO40_03450 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain JO40_03450 IPR011698 CobB/CobQ-like glutamine amidotransferase JO40_03450 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03450 IPR017929 CobB/CobQ glutamine amidotransferase JO40_03455 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site JO40_03455 IPR001085 Serine hydroxymethyltransferase JO40_03455 IPR015424 Pyridoxal phosphate-dependent transferase JO40_03455 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_03455 IPR039429 Serine hydroxymethyltransferase-like domain JO40_03465 IPR013785 Aldolase-type TIM barrel JO40_03465 IPR001093 IMP dehydrogenase/GMP reductase JO40_03465 IPR015875 IMP dehydrogenase / GMP reductase, conserved site JO40_03465 IPR005990 Inosine-5'-monophosphate dehydrogenase JO40_03465 IPR000644 CBS domain JO40_03470 IPR000462 CDP-alcohol phosphatidyltransferase JO40_03470 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase JO40_03475 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site JO40_03475 IPR000715 Glycosyl transferase, family 4 JO40_03505 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site JO40_03505 IPR001926 Pyridoxal-phosphate dependent enzyme JO40_03505 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme JO40_03505 IPR037158 Threonine synthase, N-terminal domain superfamily JO40_03505 IPR004450 Threonine synthase-like JO40_03525 IPR036679 FlgN-like superfamily JO40_03550 IPR007557 PSP1, C-terminal JO40_03555 IPR005585 Protein of unknown function DUF327 JO40_03555 IPR024042 TM1646-like domain superfamily JO40_03565 IPR007340 Opacity-associated protein A JO40_03565 IPR011055 Duplicated hybrid motif JO40_03565 IPR016047 Peptidase M23 JO40_03570 IPR002319 Phenylalanyl-tRNA synthetase JO40_03570 IPR022917 Phenylalanine-tRNA ligase alpha subunit, bacterial/archaeal JO40_03570 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_03570 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit JO40_03590 IPR024258 Protein of unknown function DUF3798 JO40_03595 IPR003593 AAA+ ATPase domain JO40_03595 IPR003439 ABC transporter-like JO40_03595 IPR017871 ABC transporter, conserved site JO40_03595 IPR015861 ABC transporter, ribose import, RbsA JO40_03595 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03615 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_03615 IPR018631 AAA-ATPase-like domain JO40_03620 IPR023753 FAD/NAD(P)-binding domain JO40_03620 IPR009051 Alpha-helical ferredoxin JO40_03620 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 JO40_03620 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_03620 IPR028261 Dihydroprymidine dehydrogenase domain II JO40_03625 IPR017938 Riboflavin synthase-like beta-barrel JO40_03625 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain JO40_03625 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit JO40_03625 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain JO40_03625 IPR017927 FAD-binding domain, ferredoxin reductase-type JO40_03625 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO40_03625 IPR001433 Oxidoreductase FAD/NAD(P)-binding JO40_03635 IPR011006 CheY-like superfamily JO40_03635 IPR037522 HD-GYP domain JO40_03635 IPR003607 HD/PDEase domain JO40_03635 IPR001789 Signal transduction response regulator, receiver domain JO40_03635 IPR021800 Domain of unknown function DUF3369 JO40_03655 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO40_03655 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_03655 IPR002301 Isoleucine-tRNA ligase JO40_03655 IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain JO40_03655 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO40_03655 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO40_03655 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_03655 IPR023586 Isoleucine-tRNA ligase, type 2 JO40_03665 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain JO40_03705 IPR003960 ATPase, AAA-type, conserved site JO40_03705 IPR022482 Proteasome ATPase JO40_03705 IPR041626 Proteasomal ATPase, N-terminal OB domain JO40_03705 IPR032501 Proteasomal ATPase OB C-terminal domain JO40_03705 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03705 IPR003959 ATPase, AAA-type, core JO40_03705 IPR003593 AAA+ ATPase domain JO40_03725 IPR036597 Fido-like domain superfamily JO40_03725 IPR003812 Fido domain JO40_03725 IPR040198 Fido domain-containing protein JO40_03725 IPR026287 Protein adenylyltransferase SoFic-like JO40_03725 IPR025758 Fic/DOC N-terminal JO40_03740 IPR017871 ABC transporter, conserved site JO40_03740 IPR003439 ABC transporter-like JO40_03740 IPR003593 AAA+ ATPase domain JO40_03740 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03745 IPR003439 ABC transporter-like JO40_03745 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03745 IPR011527 ABC transporter type 1, transmembrane domain JO40_03745 IPR003593 AAA+ ATPase domain JO40_03745 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03745 IPR017871 ABC transporter, conserved site JO40_03745 IPR039421 Type I protein exporter JO40_03755 IPR011335 Restriction endonuclease type II-like JO40_03755 IPR004603 DNA mismatch endonuclease vsr JO40_03765 IPR019065 Restriction endonuclease, type II, NgoFVII JO40_03785 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_03785 IPR039421 Type I protein exporter JO40_03785 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03785 IPR017871 ABC transporter, conserved site JO40_03785 IPR003439 ABC transporter-like JO40_03785 IPR011527 ABC transporter type 1, transmembrane domain JO40_03785 IPR003593 AAA+ ATPase domain JO40_03790 IPR001647 DNA-binding HTH domain, TetR-type JO40_03790 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal JO40_03790 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO40_03790 IPR009057 Homeobox-like domain superfamily JO40_03790 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO40_03800 IPR007438 Protein of unknown function DUF488 JO40_03805 IPR012349 FMN-binding split barrel JO40_03805 IPR002563 Flavin reductase like domain JO40_03810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_03810 IPR011166 Beta-eliminating lyase family JO40_03810 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase JO40_03810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_03810 IPR013440 Tryptophanase JO40_03810 IPR018176 Tryptophanase, conserved site JO40_03810 IPR015424 Pyridoxal phosphate-dependent transferase JO40_03815 IPR006301 Flagellar biosynthesis protein FlhA JO40_03815 IPR042196 FHIPEP, domain 4 JO40_03815 IPR042193 FHIPEP, domain 3 JO40_03815 IPR001712 Type III secretion system FHIPEP JO40_03815 IPR042194 FHIPEP, domain 1 JO40_03825 IPR002010 Type III secretion system inner membrane R protein JO40_03825 IPR006303 Flagellar biosynthesis protein FliR JO40_03830 IPR002191 Bacterial export protein family 3 JO40_03830 IPR006305 Flagellar biosynthesis protein FliQ JO40_03860 IPR005920 Imidazolonepropionase JO40_03860 IPR006680 Amidohydrolase-related JO40_03860 IPR032466 Metal-dependent hydrolase JO40_03860 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO40_03875 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_03875 IPR018631 AAA-ATPase-like domain JO40_03900 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO40_03900 IPR033479 Double Cache domain 1 JO40_03900 IPR003660 HAMP domain JO40_03900 IPR029151 Periplasmic sensor-like domain superfamily JO40_03900 IPR029787 Nucleotide cyclase JO40_03905 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_03905 IPR005119 LysR, substrate-binding JO40_03905 IPR000847 Transcription regulator HTH, LysR JO40_03905 IPR036390 Winged helix DNA-binding domain superfamily JO40_03915 IPR000914 Solute-binding protein family 5 domain JO40_03915 IPR023765 Solute-binding protein family 5, conserved site JO40_03915 IPR039424 Solute-binding protein family 5 JO40_03915 IPR030678 Peptide/nickel binding protein, MppA-type JO40_03920 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03920 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_03920 IPR017871 ABC transporter, conserved site JO40_03920 IPR003439 ABC transporter-like JO40_03920 IPR003593 AAA+ ATPase domain JO40_03925 IPR003439 ABC transporter-like JO40_03925 IPR003593 AAA+ ATPase domain JO40_03925 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_03925 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03925 IPR017871 ABC transporter, conserved site JO40_03930 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO40_03930 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_03930 IPR035906 MetI-like superfamily JO40_03935 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_03935 IPR035906 MetI-like superfamily JO40_03945 IPR013154 Alcohol dehydrogenase, N-terminal JO40_03945 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site JO40_03945 IPR036291 NAD(P)-binding domain superfamily JO40_03945 IPR020843 Polyketide synthase, enoylreductase domain JO40_03945 IPR013149 Alcohol dehydrogenase, C-terminal JO40_03945 IPR011032 GroES-like superfamily JO40_03950 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal JO40_03950 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_03950 IPR003495 CobW/HypB/UreG, nucleotide-binding domain JO40_03950 IPR036627 CobW-like, C-terminal domain superfamily JO40_03950 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW JO40_03955 IPR010327 FldB/FldC dehydratase alpha/beta subunit JO40_03970 IPR010327 FldB/FldC dehydratase alpha/beta subunit JO40_03985 IPR026045 Ferric binding protein JO40_03990 IPR012886 Formiminotransferase, N-terminal subdomain JO40_03990 IPR013802 Formiminotransferase, C-terminal subdomain JO40_03990 IPR037064 Formiminotransferase, N-terminal subdomain superfamily JO40_03990 IPR004227 Formiminotransferase catalytic domain JO40_03990 IPR037070 Formiminotransferase, C-terminal subdomain superfamily JO40_03990 IPR022384 Formiminotransferase catalytic domain superfamily JO40_03995 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter JO40_03995 IPR006059 Bacterial extracellular solute-binding protein JO40_03995 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria JO40_04005 IPR008995 Molybdate/tungstate binding, C-terminal JO40_04005 IPR015853 ABC transporter, ferric cation import, FbpC JO40_04005 IPR017871 ABC transporter, conserved site JO40_04005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04005 IPR013611 Transport-associated OB, type 2 JO40_04005 IPR003439 ABC transporter-like JO40_04005 IPR003593 AAA+ ATPase domain JO40_04015 IPR036264 Bacterial exopeptidase dimerisation domain JO40_04015 IPR011650 Peptidase M20, dimerisation domain JO40_04015 IPR002933 Peptidase M20 JO40_04015 IPR017439 Amidohydrolase JO40_04020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_04020 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain JO40_04020 IPR003594 Histidine kinase/HSP90-like ATPase JO40_04025 IPR016032 Signal transduction response regulator, C-terminal effector JO40_04025 IPR001789 Signal transduction response regulator, receiver domain JO40_04025 IPR011006 CheY-like superfamily JO40_04025 IPR000792 Transcription regulator LuxR, C-terminal JO40_04030 IPR018490 Cyclic nucleotide-binding-like JO40_04030 IPR000595 Cyclic nucleotide-binding domain JO40_04030 IPR013099 Potassium channel domain JO40_04030 IPR027378 Cyclic nucleotide-regulated ion channel, N-terminal JO40_04030 IPR018488 Cyclic nucleotide-binding, conserved site JO40_04030 IPR014710 RmlC-like jelly roll fold JO40_04035 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_04035 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_04035 IPR023536 Coenzyme A disulphide reductase, staphyolococci JO40_04035 IPR023753 FAD/NAD(P)-binding domain JO40_04035 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily JO40_04035 IPR017758 Coenzyme A disulphide reductase JO40_04095 IPR029760 Glutathione peroxidase conserved site JO40_04095 IPR036249 Thioredoxin-like superfamily JO40_04095 IPR029759 Glutathione peroxidase active site JO40_04095 IPR000889 Glutathione peroxidase JO40_04115 IPR013430 Toxin-antitoxin system, antidote protein, HigA JO40_04115 IPR001387 Cro/C1-type helix-turn-helix domain JO40_04115 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO40_04120 IPR007711 Toxin HigB-1 JO40_04120 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily JO40_04130 IPR004268 Peptidoglycan biosynthesis protein MurJ JO40_04135 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal JO40_04135 IPR039718 Ribonucleoside-diphosphate reductase large subunit JO40_04135 IPR013346 Ribonucleotide reductase, class I , alpha subunit JO40_04135 IPR013509 Ribonucleotide reductase large subunit, N-terminal JO40_04135 IPR000788 Ribonucleotide reductase large subunit, C-terminal JO40_04135 IPR005144 ATP-cone domain JO40_04140 IPR013785 Aldolase-type TIM barrel JO40_04140 IPR023014 Fructose-bisphosphate aldolase class I, Gram positive bacteria-type JO40_04140 IPR000741 Fructose-bisphosphate aldolase, class-I JO40_04170 IPR013029 YchF, C-terminal domain JO40_04170 IPR012676 TGS-like JO40_04170 IPR041706 YchF, N-terminal JO40_04170 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 JO40_04170 IPR004095 TGS JO40_04170 IPR023192 TGS-like domain superfamily JO40_04170 IPR012675 Beta-grasp domain superfamily JO40_04170 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04170 IPR031167 OBG-type guanine nucleotide-binding (G) domain JO40_04170 IPR006073 GTP binding domain JO40_04175 IPR004634 Peptidase S49, protease IV JO40_04175 IPR029045 ClpP/crotonase-like domain superfamily JO40_04175 IPR004635 Peptidase S49, SppA JO40_04175 IPR002142 Peptidase S49 JO40_04180 IPR000257 Uroporphyrinogen decarboxylase (URO-D) JO40_04180 IPR038071 UROD/MetE-like superfamily JO40_04180 IPR006361 Uroporphyrinogen decarboxylase HemE JO40_04200 IPR036594 Methionine synthase domain JO40_04200 IPR036724 Cobalamin-binding domain superfamily JO40_04200 IPR012741 Methyltransferase cognate corrinoid protein JO40_04200 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain JO40_04200 IPR006158 Cobalamin (vitamin B12)-binding domain JO40_04205 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type JO40_04205 IPR005946 Ribose-phosphate pyrophosphokinase JO40_04205 IPR029057 Phosphoribosyltransferase-like JO40_04205 IPR000836 Phosphoribosyltransferase domain JO40_04205 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site JO40_04205 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain JO40_04210 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04210 IPR011527 ABC transporter type 1, transmembrane domain JO40_04210 IPR003593 AAA+ ATPase domain JO40_04210 IPR003439 ABC transporter-like JO40_04210 IPR017871 ABC transporter, conserved site JO40_04210 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04210 IPR039421 Type I protein exporter JO40_04215 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04215 IPR017871 ABC transporter, conserved site JO40_04215 IPR003593 AAA+ ATPase domain JO40_04215 IPR003439 ABC transporter-like JO40_04215 IPR039421 Type I protein exporter JO40_04215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04215 IPR011527 ABC transporter type 1, transmembrane domain JO40_04220 IPR000727 Target SNARE coiled-coil homology domain JO40_04220 IPR029151 Periplasmic sensor-like domain superfamily JO40_04220 IPR033479 Double Cache domain 1 JO40_04220 IPR003660 HAMP domain JO40_04220 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04220 IPR004090 Chemotaxis methyl-accepting receptor JO40_04225 IPR001279 Metallo-beta-lactamase JO40_04225 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_04230 IPR037171 NagB/RpiA transferase-like JO40_04230 IPR018321 Glucosamine-6-phosphate isomerase, conserved site JO40_04230 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase JO40_04230 IPR004547 Glucosamine-6-phosphate isomerase JO40_04240 IPR000358 Ribonucleotide reductase small subunit family JO40_04240 IPR033909 Ribonucleotide reductase small subunit JO40_04240 IPR012348 Ribonucleotide reductase-like JO40_04240 IPR009078 Ferritin-like superfamily JO40_04240 IPR030475 Ribonucleotide reductase small subunit, acitve site JO40_04260 IPR004445 Sodium/glutamate symport carrier protein GltS JO40_04265 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04265 IPR003660 HAMP domain JO40_04270 IPR033479 Double Cache domain 1 JO40_04270 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding JO40_04270 IPR029151 Periplasmic sensor-like domain superfamily JO40_04270 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04270 IPR003660 HAMP domain JO40_04275 IPR035994 Nucleoside phosphorylase superfamily JO40_04275 IPR000845 Nucleoside phosphorylase domain JO40_04275 IPR018016 Nucleoside phosphorylase, conserved site JO40_04275 IPR004402 Purine nucleoside phosphorylase DeoD-type JO40_04325 IPR013656 PAS fold-4 JO40_04325 IPR035965 PAS domain superfamily JO40_04325 IPR000014 PAS domain JO40_04325 IPR029787 Nucleotide cyclase JO40_04325 IPR000160 GGDEF domain JO40_04325 IPR035919 EAL domain superfamily JO40_04325 IPR001633 EAL domain JO40_04330 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily JO40_04330 IPR002082 Aspartate carbamoyltransferase JO40_04330 IPR006130 Aspartate/ornithine carbamoyltransferase JO40_04330 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal JO40_04330 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal JO40_04330 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding JO40_04330 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily JO40_04330 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily JO40_04330 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain JO40_04335 IPR001991 Sodium:dicarboxylate symporter JO40_04335 IPR036458 Sodium:dicarboxylate symporter superfamily JO40_04350 IPR017236 Glycine/sarcosine/betaine reductase, component C, beta JO40_04350 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_04350 IPR016039 Thiolase-like JO40_04355 IPR012116 Glycine/sarcosine/betaine reductase complex, protein C, alpha subunit JO40_04355 IPR003664 Fatty acid synthesis PlsX protein JO40_04365 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04365 IPR008995 Molybdate/tungstate binding, C-terminal JO40_04365 IPR017871 ABC transporter, conserved site JO40_04365 IPR003439 ABC transporter-like JO40_04365 IPR003593 AAA+ ATPase domain JO40_04365 IPR040582 MalK, OB fold domain JO40_04365 IPR005116 Transport-associated OB, type 1 JO40_04370 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_04370 IPR035906 MetI-like superfamily JO40_04375 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_04375 IPR035906 MetI-like superfamily JO40_04375 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like JO40_04385 IPR004087 K Homology domain JO40_04385 IPR006675 HDIG domain JO40_04385 IPR006674 HD domain JO40_04385 IPR003607 HD/PDEase domain JO40_04385 IPR022711 Ribonuclease Y, N-terminal JO40_04385 IPR017705 Ribonuclease Y JO40_04385 IPR004088 K Homology domain, type 1 JO40_04385 IPR036612 K Homology domain, type 1 superfamily JO40_04395 IPR029052 Metallo-dependent phosphatase-like JO40_04395 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type JO40_04395 IPR026843 Nuclease SbcCD subunit D, C-terminal domain JO40_04395 IPR004593 Nuclease SbcCD subunit D JO40_04395 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain JO40_04400 IPR004090 Chemotaxis methyl-accepting receptor JO40_04400 IPR003660 HAMP domain JO40_04400 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04400 IPR029151 Periplasmic sensor-like domain superfamily JO40_04400 IPR033463 Single cache domain 3 JO40_04405 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily JO40_04405 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_04405 IPR036390 Winged helix DNA-binding domain superfamily JO40_04405 IPR000524 Transcription regulator HTH, GntR JO40_04405 IPR011663 UbiC transcription regulator-associated JO40_04410 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04410 IPR003439 ABC transporter-like JO40_04410 IPR003593 AAA+ ATPase domain JO40_04420 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_04420 IPR018631 AAA-ATPase-like domain JO40_04430 IPR010087 Flavodoxin, short chain JO40_04430 IPR008254 Flavodoxin/nitric oxide synthase JO40_04430 IPR001226 Flavodoxin, conserved site JO40_04430 IPR029039 Flavoprotein-like superfamily JO40_04445 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal JO40_04445 IPR023042 Peptidase M17, leucine aminopeptidase JO40_04445 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal JO40_04445 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B JO40_04450 IPR002589 Macro domain JO40_04455 IPR022637 DNA polymerase III, beta sliding clamp, central JO40_04455 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal JO40_04455 IPR001001 DNA polymerase III, beta sliding clamp JO40_04455 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal JO40_04460 IPR001238 DNA-binding, RecF JO40_04460 IPR018078 DNA-binding, RecF, conserved site JO40_04460 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04460 IPR003395 RecF/RecN/SMC, N-terminal JO40_04460 IPR042174 DNA-binding RecF, domain 2 JO40_04530 IPR007922 Protein of unknown function DUF721/UPF0232 JO40_04535 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily JO40_04535 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site JO40_04535 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain JO40_04535 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain JO40_04535 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding JO40_04535 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_04535 IPR023546 Methylated-DNA--protein-cysteine methyltransferase JO40_04575 IPR009875 PilZ domain JO40_04590 IPR035906 MetI-like superfamily JO40_04590 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_04595 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain JO40_04595 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04595 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR JO40_04600 IPR004680 Citrate transporter-like domain JO40_04600 IPR000802 Arsenical pump membrane protein, ArsB JO40_04610 IPR000330 SNF2-related, N-terminal domain JO40_04610 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04610 IPR038718 SNF2-like, N-terminal domain superfamily JO40_04610 IPR022138 Helicase SWF/SNF-related JO40_04610 IPR001650 Helicase, C-terminal JO40_04610 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_04615 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_04615 IPR018631 AAA-ATPase-like domain JO40_04640 IPR003812 Fido domain JO40_04640 IPR036597 Fido-like domain superfamily JO40_04645 IPR000620 EamA domain JO40_04650 IPR002781 Transmembrane protein TauE-like JO40_04655 IPR032466 Metal-dependent hydrolase JO40_04655 IPR001365 Adenosine/AMP deaminase domain JO40_04670 IPR035906 MetI-like superfamily JO40_04670 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_04670 IPR011866 Sulphate ABC transporter, permease protein CysW JO40_04670 IPR005667 Sulphate ABC transporter permease protein 2 JO40_04675 IPR008995 Molybdate/tungstate binding, C-terminal JO40_04675 IPR003593 AAA+ ATPase domain JO40_04675 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA JO40_04675 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04675 IPR003439 ABC transporter-like JO40_04675 IPR013611 Transport-associated OB, type 2 JO40_04675 IPR017871 ABC transporter, conserved site JO40_04680 IPR029151 Periplasmic sensor-like domain superfamily JO40_04680 IPR000727 Target SNARE coiled-coil homology domain JO40_04680 IPR033479 Double Cache domain 1 JO40_04680 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04680 IPR003660 HAMP domain JO40_04695 IPR029762 Pyroglutamyl peptidase I, bacterial-type JO40_04695 IPR000816 Peptidase C15, pyroglutamyl peptidase I JO40_04695 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like JO40_04695 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily JO40_04695 IPR033693 Pyroglutamyl peptidase I, Glu active site JO40_04695 IPR033694 Pyroglutamyl peptidase I, Cys active site JO40_04700 IPR018631 AAA-ATPase-like domain JO40_04700 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_04705 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal JO40_04705 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase JO40_04705 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain JO40_04705 IPR006405 Nicotinate phosphoribosyltransferase pncB-type JO40_04705 IPR013785 Aldolase-type TIM barrel JO40_04705 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain JO40_04705 IPR007229 Nicotinate phosphoribosyltransferase family JO40_04725 IPR000640 Elongation factor EFG, domain V-like JO40_04725 IPR035649 EFG, domain V JO40_04725 IPR004161 Translation elongation factor EFTu-like, domain 2 JO40_04725 IPR035647 EF-G domain III/V-like JO40_04725 IPR009022 Elongation factor G, domain III JO40_04725 IPR041095 Elongation Factor G, domain II JO40_04725 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_04725 IPR005517 Translation elongation factor EFG/EF2, domain IV JO40_04725 IPR004540 Translation elongation factor EFG/EF2 JO40_04725 IPR009000 Translation protein, beta-barrel domain superfamily JO40_04725 IPR000795 Transcription factor, GTP-binding domain JO40_04725 IPR005225 Small GTP-binding protein domain JO40_04725 IPR031157 Tr-type G domain, conserved site JO40_04725 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04725 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_04730 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_04730 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_04730 IPR007473 Ribosomal RNA large subunit methyltransferase J JO40_04740 IPR036291 NAD(P)-binding domain superfamily JO40_04740 IPR006037 Regulator of K+ conductance, C-terminal JO40_04740 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily JO40_04740 IPR003148 Regulator of K+ conductance, N-terminal JO40_04745 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal JO40_04745 IPR005743 DNA gyrase, subunit A JO40_04745 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat JO40_04745 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO40_04745 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal JO40_04745 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta JO40_04745 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily JO40_04765 IPR013785 Aldolase-type TIM barrel JO40_04765 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ JO40_04765 IPR011060 Ribulose-phosphate binding barrel JO40_04765 IPR033755 PdxS/SNZ N-terminal domain JO40_04775 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal JO40_04775 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase JO40_04775 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type JO40_04775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_04785 IPR003876 Arginine deiminase JO40_04790 IPR029028 Alpha/beta knot methyltransferases JO40_04790 IPR006700 Ribosomal RNA small subunit methyltransferase E JO40_04790 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO40_04805 IPR004772 TrkH potassium transport family JO40_04805 IPR003445 Cation transporter JO40_04810 IPR036291 NAD(P)-binding domain superfamily JO40_04810 IPR006037 Regulator of K+ conductance, C-terminal JO40_04810 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily JO40_04810 IPR003148 Regulator of K+ conductance, N-terminal JO40_04820 IPR002716 PIN domain JO40_04820 IPR029060 PIN-like domain superfamily JO40_04820 IPR022907 VapC family JO40_04825 IPR037914 SpoVT-AbrB domain superfamily JO40_04825 IPR007159 SpoVT-AbrB domain JO40_04830 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04830 IPR003593 AAA+ ATPase domain JO40_04830 IPR039421 Type I protein exporter JO40_04830 IPR003439 ABC transporter-like JO40_04830 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04830 IPR011527 ABC transporter type 1, transmembrane domain JO40_04830 IPR017871 ABC transporter, conserved site JO40_04835 IPR011703 ATPase, AAA-3 JO40_04835 IPR041628 ChlI/MoxR, AAA lid domain JO40_04835 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04840 IPR002550 CNNM, transmembrane domain JO40_04840 IPR005170 Transporter-associated domain JO40_04840 IPR016169 FAD-binding, type PCMH, subdomain 2 JO40_04840 IPR036318 FAD-binding, type PCMH-like superfamily JO40_04840 IPR000644 CBS domain JO40_04845 IPR036318 FAD-binding, type PCMH-like superfamily JO40_04845 IPR005170 Transporter-associated domain JO40_04845 IPR016169 FAD-binding, type PCMH, subdomain 2 JO40_04845 IPR002550 CNNM, transmembrane domain JO40_04845 IPR000644 CBS domain JO40_04860 IPR004589 DNA helicase, ATP-dependent, RecQ type JO40_04860 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial JO40_04860 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_04860 IPR001650 Helicase, C-terminal JO40_04860 IPR010997 HRDC-like superfamily JO40_04860 IPR002121 HRDC domain JO40_04860 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04860 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain JO40_04860 IPR018982 RQC domain JO40_04860 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_04860 IPR011545 DEAD/DEAH box helicase domain JO40_04865 IPR028629 CRISPR-associated endonuclease Cas9 JO40_04865 IPR032237 CRISPR-associated endonuclease Cas9, PAM-interacting domain JO40_04865 IPR003615 HNH nuclease JO40_04865 IPR032239 CRISPR-associated endonuclease Cas9, bridge helix JO40_04865 IPR032240 CRISPR-associated endonuclease Cas9, REC lobe JO40_04865 IPR033114 Cas9-type HNH domain JO40_04870 IPR002729 CRISPR-associated protein Cas1 JO40_04870 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain JO40_04870 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain JO40_04870 IPR019855 CRISPR-associated protein Cas1, NMENI subtype JO40_04875 IPR021127 CRISPR-associated endonuclease Cas2 JO40_04875 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 JO40_04890 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04890 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04890 IPR017871 ABC transporter, conserved site JO40_04890 IPR003439 ABC transporter-like JO40_04890 IPR011527 ABC transporter type 1, transmembrane domain JO40_04890 IPR003593 AAA+ ATPase domain JO40_04890 IPR039421 Type I protein exporter JO40_04915 IPR036565 Mur-like, catalytic domain superfamily JO40_04915 IPR004101 Mur ligase, C-terminal JO40_04915 IPR036615 Mur ligase, C-terminal domain superfamily JO40_04915 IPR013221 Mur ligase, central JO40_04915 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase JO40_04935 IPR005074 Peptidase C39, bacteriocin processing JO40_04935 IPR003439 ABC transporter-like JO40_04935 IPR003593 AAA+ ATPase domain JO40_04935 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04935 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_04935 IPR011527 ABC transporter type 1, transmembrane domain JO40_04935 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04935 IPR039421 Type I protein exporter JO40_04940 IPR003439 ABC transporter-like JO40_04940 IPR039421 Type I protein exporter JO40_04940 IPR005074 Peptidase C39, bacteriocin processing JO40_04940 IPR005897 Peptidase C39, ABC-type bacteriocin transporter JO40_04940 IPR011527 ABC transporter type 1, transmembrane domain JO40_04940 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_04940 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04940 IPR017871 ABC transporter, conserved site JO40_04940 IPR003593 AAA+ ATPase domain JO40_04945 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain JO40_04945 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA JO40_04945 IPR001296 Glycosyl transferase, family 1 JO40_04950 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_04950 IPR013611 Transport-associated OB, type 2 JO40_04950 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit JO40_04950 IPR017871 ABC transporter, conserved site JO40_04950 IPR008995 Molybdate/tungstate binding, C-terminal JO40_04950 IPR003439 ABC transporter-like JO40_04950 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA JO40_04950 IPR003593 AAA+ ATPase domain JO40_04955 IPR035906 MetI-like superfamily JO40_04955 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_04960 IPR029787 Nucleotide cyclase JO40_04960 IPR000160 GGDEF domain JO40_04965 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily JO40_04965 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_04965 IPR023753 FAD/NAD(P)-binding domain JO40_04965 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_04975 IPR016169 FAD-binding, type PCMH, subdomain 2 JO40_04975 IPR006094 FAD linked oxidase, N-terminal JO40_04975 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase JO40_04975 IPR016167 FAD-binding, type PCMH, subdomain 1 JO40_04975 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily JO40_04975 IPR036318 FAD-binding, type PCMH-like superfamily JO40_04975 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal JO40_04975 IPR016166 FAD-binding domain, PCMH-type JO40_04980 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase JO40_04980 IPR032678 tRNA synthetases class I, catalytic domain JO40_04980 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_04980 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR JO40_04980 IPR015803 Cysteine-tRNA ligase JO40_04980 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_04995 IPR038765 Papain-like cysteine peptidase superfamily JO40_04995 IPR002931 Transglutaminase-like JO40_05000 IPR003445 Cation transporter JO40_05000 IPR004772 TrkH potassium transport family JO40_05005 IPR003148 Regulator of K+ conductance, N-terminal JO40_05005 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily JO40_05005 IPR036291 NAD(P)-binding domain superfamily JO40_05005 IPR006037 Regulator of K+ conductance, C-terminal JO40_05005 IPR006036 Potassium uptake protein TrkA JO40_05010 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05010 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type JO40_05060 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted JO40_05060 IPR001537 tRNA/rRNA methyltransferase, SpoU type JO40_05060 IPR004441 RNA methyltransferase TrmH family JO40_05060 IPR029064 50S ribosomal protein L30e-like JO40_05060 IPR029028 Alpha/beta knot methyltransferases JO40_05060 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO40_05060 IPR013123 RNA 2-O ribose methyltransferase, substrate binding JO40_05095 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO40_05095 IPR010113 Nif-specific regulatory protein JO40_05095 IPR025944 Sigma-54 interaction domain, conserved site JO40_05095 IPR003593 AAA+ ATPase domain JO40_05095 IPR003018 GAF domain JO40_05095 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_05095 IPR029016 GAF-like domain superfamily JO40_05095 IPR002078 RNA polymerase sigma factor 54 interaction domain JO40_05095 IPR009057 Homeobox-like domain superfamily JO40_05095 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05095 IPR002197 DNA binding HTH domain, Fis-type JO40_05115 IPR000056 Ribulose-phosphate 3-epimerase-like JO40_05115 IPR026019 Ribulose-phosphate 3-epimerase JO40_05115 IPR011060 Ribulose-phosphate binding barrel JO40_05115 IPR013785 Aldolase-type TIM barrel JO40_05125 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05125 IPR039430 Thymidylate kinase-like domain JO40_05125 IPR018095 Thymidylate kinase, conserved site JO40_05125 IPR018094 Thymidylate kinase JO40_05135 IPR010827 POTRA domain, BamA/TamA-like JO40_05135 IPR034746 POTRA domain JO40_05135 IPR039910 Surface antigen D15-like JO40_05135 IPR000184 Bacterial surface antigen (D15) JO40_05135 IPR023707 Outer membrane protein assembly factor BamA JO40_05145 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05145 IPR036678 MutS, connector domain superfamily JO40_05145 IPR007860 DNA mismatch repair protein MutS, connector domain JO40_05145 IPR036187 DNA mismatch repair protein MutS, core domain superfamily JO40_05145 IPR016151 DNA mismatch repair protein MutS, N-terminal JO40_05145 IPR007696 DNA mismatch repair protein MutS, core JO40_05145 IPR007861 DNA mismatch repair protein MutS, clamp JO40_05145 IPR005748 DNA mismatch repair protein MutS JO40_05145 IPR007695 DNA mismatch repair protein MutS-like, N-terminal JO40_05145 IPR000432 DNA mismatch repair protein MutS, C-terminal JO40_05145 IPR017261 DNA mismatch repair protein MutS/MSH JO40_05155 IPR003439 ABC transporter-like JO40_05155 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05155 IPR017871 ABC transporter, conserved site JO40_05155 IPR003593 AAA+ ATPase domain JO40_05170 IPR029151 Periplasmic sensor-like domain superfamily JO40_05170 IPR003660 HAMP domain JO40_05170 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_05170 IPR000727 Target SNARE coiled-coil homology domain JO40_05170 IPR033479 Double Cache domain 1 JO40_05210 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_05210 IPR018631 AAA-ATPase-like domain JO40_05215 IPR016100 Prismane, alpha-bundle JO40_05215 IPR011254 Prismane-like superfamily JO40_05215 IPR016099 Prismane-like, alpha/beta-sandwich JO40_05215 IPR010048 Hydroxylamine reductase JO40_05215 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase JO40_05230 IPR003142 Biotin protein ligase, C-terminal JO40_05230 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain JO40_05230 IPR013196 Helix-turn-helix, type 11 JO40_05230 IPR008988 Transcriptional repressor, C-terminal JO40_05230 IPR030855 Bifunctional ligase/repressor BirA JO40_05230 IPR036390 Winged helix DNA-binding domain superfamily JO40_05230 IPR004409 Biotin operon repressor, helix-turn-helix domain JO40_05230 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_05230 IPR004408 Biotin--acetyl-CoA-carboxylase ligase JO40_05235 IPR000873 AMP-dependent synthetase/ligase JO40_05235 IPR020845 AMP-binding, conserved site JO40_05235 IPR042099 AMP-dependent synthetase-like superfamily JO40_05235 IPR025110 AMP-binding enzyme, C-terminal domain JO40_05240 IPR000794 Beta-ketoacyl synthase JO40_05240 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain JO40_05240 IPR018201 Beta-ketoacyl synthase, active site JO40_05240 IPR014031 Beta-ketoacyl synthase, C-terminal JO40_05240 IPR014030 Beta-ketoacyl synthase, N-terminal JO40_05240 IPR016039 Thiolase-like JO40_05240 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 JO40_05260 IPR003593 AAA+ ATPase domain JO40_05260 IPR011704 ATPase, dynein-related, AAA domain JO40_05260 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05260 IPR021961 Protein of unknown function DUF3578 JO40_05270 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain JO40_05270 IPR011042 Six-bladed beta-propeller, TolB-like JO40_05270 IPR029058 Alpha/Beta hydrolase fold JO40_05270 IPR011659 WD40-like Beta Propeller JO40_05275 IPR006047 Glycosyl hydrolase, family 13, catalytic domain JO40_05275 IPR013780 Glycosyl hydrolase, all-beta JO40_05275 IPR011837 Glycogen debranching enzyme, GlgX type JO40_05275 IPR017853 Glycoside hydrolase superfamily JO40_05275 IPR013783 Immunoglobulin-like fold JO40_05275 IPR004193 Glycoside hydrolase, family 13, N-terminal JO40_05275 IPR014756 Immunoglobulin E-set JO40_05285 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_05285 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_05285 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site JO40_05285 IPR000192 Aminotransferase class V domain JO40_05285 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal JO40_05285 IPR015424 Pyridoxal phosphate-dependent transferase JO40_05285 IPR016454 Cysteine desulfurase JO40_05290 IPR016037 3-dehydroquinate synthase AroB JO40_05290 IPR030960 3-dehydroquinate synthase domain JO40_05290 IPR030963 3-dehydroquinate synthase family JO40_05295 IPR010049 MTA/SAH nucleosidase JO40_05295 IPR000845 Nucleoside phosphorylase domain JO40_05295 IPR035994 Nucleoside phosphorylase superfamily JO40_05310 IPR003439 ABC transporter-like JO40_05310 IPR017871 ABC transporter, conserved site JO40_05310 IPR011917 ABC transporter, lipid A export, MsbA JO40_05310 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05310 IPR039421 Type I protein exporter JO40_05310 IPR011527 ABC transporter type 1, transmembrane domain JO40_05310 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_05310 IPR003593 AAA+ ATPase domain JO40_05320 IPR014776 Tetrapyrrole methylase, subdomain 2 JO40_05320 IPR000878 Tetrapyrrole methylase JO40_05320 IPR014777 Tetrapyrrole methylase, subdomain 1 JO40_05320 IPR018063 SAM-dependent methyltransferase RsmI, conserved site JO40_05320 IPR008189 rRNA small subunit methyltransferase I JO40_05320 IPR035996 Tetrapyrrole methylase superfamily JO40_05335 IPR000924 Glutamyl/glutaminyl-tRNA synthetase JO40_05335 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain JO40_05335 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding JO40_05335 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial JO40_05335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_05335 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 JO40_05335 IPR033910 Glutamyl-tRNA synthetase JO40_05345 IPR004381 Glycerate kinase JO40_05345 IPR018193 Glycerate kinase, flavodoxin-like fold JO40_05345 IPR018197 Glycerate kinase, restriction-enzyme-like fold JO40_05345 IPR036129 Glycerate kinase superfamily JO40_05350 IPR027256 P-type ATPase, subfamily IB JO40_05350 IPR001757 P-type ATPase JO40_05350 IPR006121 Heavy metal-associated domain, HMA JO40_05350 IPR017969 Heavy-metal-associated, conserved site JO40_05350 IPR023299 P-type ATPase, cytoplasmic domain N JO40_05350 IPR018303 P-type ATPase, phosphorylation site JO40_05350 IPR023298 P-type ATPase, transmembrane domain superfamily JO40_05350 IPR006122 Heavy metal-associated domain, copper ion-binding JO40_05350 IPR036163 Heavy metal-associated domain superfamily JO40_05350 IPR023214 HAD superfamily JO40_05350 IPR036412 HAD-like superfamily JO40_05350 IPR008250 P-type ATPase, A domain superfamily JO40_05360 IPR000086 NUDIX hydrolase domain JO40_05360 IPR020476 NUDIX hydrolase JO40_05360 IPR015797 NUDIX hydrolase-like domain superfamily JO40_05360 IPR020084 NUDIX hydrolase, conserved site JO40_05370 IPR012347 Ferritin-like JO40_05370 IPR023188 DNA-binding protein Dps, conserved site JO40_05370 IPR009078 Ferritin-like superfamily JO40_05370 IPR008331 Ferritin/DPS protein domain JO40_05370 IPR002177 DNA-binding protein Dps JO40_05375 IPR019479 Peroxiredoxin, C-terminal JO40_05375 IPR024706 Peroxiredoxin, AhpC-type JO40_05375 IPR013766 Thioredoxin domain JO40_05375 IPR036249 Thioredoxin-like superfamily JO40_05375 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant JO40_05375 IPR022915 Peroxiredoxin, TDXH subfamily JO40_05380 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JO40_05380 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site JO40_05380 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JO40_05380 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase JO40_05380 IPR036291 NAD(P)-binding domain superfamily JO40_05395 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05395 IPR032423 AAA C-terminal domain JO40_05395 IPR021886 MgsA AAA+ ATPase C-terminal JO40_05395 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal JO40_05395 IPR003959 ATPase, AAA-type, core JO40_05395 IPR003593 AAA+ ATPase domain JO40_05400 IPR023367 Peptidase M42, domain 2 JO40_05400 IPR008007 Peptidase M42 JO40_05415 IPR004154 Anticodon-binding JO40_05415 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_05415 IPR036621 Anticodon-binding domain superfamily JO40_05415 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO40_05415 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 JO40_05415 IPR022961 Glycine-tRNA ligase, bacterial JO40_05415 IPR033731 Glycyl-tRNA synthetase-like core domain JO40_05415 IPR002315 Glycyl-tRNA synthetase JO40_05435 IPR001764 Glycoside hydrolase, family 3, N-terminal JO40_05435 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily JO40_05435 IPR002772 Glycoside hydrolase family 3 C-terminal domain JO40_05435 IPR019800 Glycoside hydrolase, family 3, active site JO40_05435 IPR017853 Glycoside hydrolase superfamily JO40_05435 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily JO40_05460 IPR039421 Type I protein exporter JO40_05460 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05460 IPR017871 ABC transporter, conserved site JO40_05460 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_05460 IPR011527 ABC transporter type 1, transmembrane domain JO40_05460 IPR003593 AAA+ ATPase domain JO40_05460 IPR003439 ABC transporter-like JO40_05465 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05465 IPR003593 AAA+ ATPase domain JO40_05465 IPR011527 ABC transporter type 1, transmembrane domain JO40_05465 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_05465 IPR003439 ABC transporter-like JO40_05465 IPR039421 Type I protein exporter JO40_05465 IPR017871 ABC transporter, conserved site JO40_05545 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05545 IPR017871 ABC transporter, conserved site JO40_05545 IPR003439 ABC transporter-like JO40_05545 IPR003593 AAA+ ATPase domain JO40_05560 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_05560 IPR010233 Ubiquinone biosynthesis O-methyltransferase JO40_05600 IPR006439 HAD hydrolase, subfamily IA JO40_05600 IPR036412 HAD-like superfamily JO40_05600 IPR023198 Phosphoglycolate phosphatase-like, domain 2 JO40_05600 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB JO40_05600 IPR041492 Haloacid dehalogenase-like hydrolase JO40_05600 IPR023214 HAD superfamily JO40_05620 IPR011527 ABC transporter type 1, transmembrane domain JO40_05620 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_05620 IPR007037 Siderophore-interacting protein, C-terminal domain JO40_05620 IPR017938 Riboflavin synthase-like beta-barrel JO40_05620 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO40_05620 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05620 IPR003593 AAA+ ATPase domain JO40_05620 IPR017927 FAD-binding domain, ferredoxin reductase-type JO40_05620 IPR013113 FAD-binding 9, siderophore-interacting JO40_05620 IPR017871 ABC transporter, conserved site JO40_05620 IPR003439 ABC transporter-like JO40_05655 IPR016181 Acyl-CoA N-acyltransferase JO40_05655 IPR024170 Aminoglycoside N6-acetyltransferase JO40_05655 IPR000182 GNAT domain JO40_05695 IPR003593 AAA+ ATPase domain JO40_05695 IPR003439 ABC transporter-like JO40_05695 IPR017871 ABC transporter, conserved site JO40_05695 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05710 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO40_05710 IPR001647 DNA-binding HTH domain, TetR-type JO40_05710 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO40_05710 IPR009057 Homeobox-like domain superfamily JO40_05730 IPR035801 Protein-ADP-ribose hydrolase, macro domain JO40_05730 IPR002589 Macro domain JO40_05735 IPR026590 Sirtuin family, catalytic core domain JO40_05735 IPR029035 DHS-like NAD/FAD-binding domain superfamily JO40_05735 IPR026591 Sirtuin, catalytic core small domain superfamily JO40_05750 IPR029787 Nucleotide cyclase JO40_05750 IPR011006 CheY-like superfamily JO40_05750 IPR000160 GGDEF domain JO40_05750 IPR001789 Signal transduction response regulator, receiver domain JO40_05765 IPR013785 Aldolase-type TIM barrel JO40_05765 IPR035587 DUS-like, FMN-binding domain JO40_05765 IPR001269 tRNA-dihydrouridine synthase JO40_05765 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal JO40_05765 IPR018517 tRNA-dihydrouridine synthase, conserved site JO40_05765 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 JO40_05800 IPR007630 RNA polymerase sigma-70 region 4 JO40_05800 IPR012845 RNA polymerase sigma factor, FliA/WhiG JO40_05800 IPR014284 RNA polymerase sigma-70 like domain JO40_05800 IPR013325 RNA polymerase sigma factor, region 2 JO40_05800 IPR000943 RNA polymerase sigma-70 JO40_05800 IPR007627 RNA polymerase sigma-70 region 2 JO40_05800 IPR013324 RNA polymerase sigma factor, region 3/4-like JO40_05800 IPR007624 RNA polymerase sigma-70 region 3 JO40_05810 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 JO40_05810 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05810 IPR025501 ATP binding protein MinD JO40_05815 IPR003593 AAA+ ATPase domain JO40_05815 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05815 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO40_05815 IPR020006 Flagellar biosynthesis protein FlhF JO40_05820 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_05820 IPR004839 Aminotransferase, class I/classII JO40_05820 IPR005860 L-threonine-O-3-phosphate decarboxylase JO40_05820 IPR015424 Pyridoxal phosphate-dependent transferase JO40_05820 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_05855 IPR005648 Flagellar hook capping protein JO40_05860 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO40_05860 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO40_05860 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO40_05860 IPR019776 Flagellar basal body rod protein, conserved site JO40_05860 IPR001444 Flagellar basal body rod protein, N-terminal JO40_05860 IPR037058 Flagellar hook protein FlgE superfamily JO40_05860 IPR011491 Flagellar hook protein FlgE JO40_05870 IPR000540 Flagellar motor protein MotA, conserved site JO40_05870 IPR002898 MotA/TolQ/ExbB proton channel JO40_05875 IPR006665 OmpA-like domain JO40_05875 IPR025713 Motility protein B, N-terminal domain JO40_05875 IPR036737 OmpA-like domain superfamily JO40_05880 IPR005503 Flagellar basal body-associated protein FliL JO40_05885 IPR001543 Surface presentation of antigen (SpoA) JO40_05885 IPR036429 SpoA-like superfamily JO40_05885 IPR001689 Flagellar motor switch protein FliM JO40_05885 IPR028976 CheC-like superfamily JO40_05890 IPR007597 CheC-like protein JO40_05890 IPR012826 Flagellar motor switch FliN JO40_05890 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb JO40_05890 IPR028976 CheC-like superfamily JO40_05890 IPR036429 SpoA-like superfamily JO40_05890 IPR001543 Surface presentation of antigen (SpoA) JO40_05900 IPR005838 Type III secretion system inner membrane P protein JO40_05900 IPR005837 Flagellar transport protein FliP JO40_05945 IPR036291 NAD(P)-binding domain superfamily JO40_05945 IPR023401 Ornithine cyclodeaminase, N-terminal JO40_05945 IPR003462 Ornithine cyclodeaminase/mu-crystallin JO40_05950 IPR016047 Peptidase M23 JO40_05950 IPR010090 Phage tail tape measure protein JO40_05950 IPR000189 Prokaryotic transglycosylase, active site JO40_05950 IPR023346 Lysozyme-like domain superfamily JO40_05950 IPR011055 Duplicated hybrid motif JO40_05950 IPR008258 Transglycosylase SLT domain 1 JO40_05955 IPR036249 Thioredoxin-like superfamily JO40_05955 IPR017167 Uncharacterised conserved protein UCP037291, glutaredoxin-related JO40_05970 IPR005225 Small GTP-binding protein domain JO40_05970 IPR025121 GTPase HflX, N-terminal JO40_05970 IPR016496 GTPase HflX JO40_05970 IPR006073 GTP binding domain JO40_05970 IPR032305 GTP-binding protein, middle domain JO40_05970 IPR030394 HflX-type guanine nucleotide-binding (G) domain JO40_05970 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_05970 IPR042108 GTPase HflX, N-terminal domain superfamily JO40_05985 IPR018517 tRNA-dihydrouridine synthase, conserved site JO40_05985 IPR001269 tRNA-dihydrouridine synthase JO40_05985 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 JO40_05985 IPR035587 DUS-like, FMN-binding domain JO40_05985 IPR013785 Aldolase-type TIM barrel JO40_05990 IPR032466 Metal-dependent hydrolase JO40_05990 IPR015991 Uncharacterised hydrolase TatD-type JO40_05990 IPR018228 Deoxyribonuclease, TatD-related, conserved site JO40_05990 IPR001130 TatD family JO40_06000 IPR029787 Nucleotide cyclase JO40_06000 IPR029016 GAF-like domain superfamily JO40_06000 IPR000160 GGDEF domain JO40_06005 IPR011006 CheY-like superfamily JO40_06005 IPR000160 GGDEF domain JO40_06005 IPR029787 Nucleotide cyclase JO40_06005 IPR001789 Signal transduction response regulator, receiver domain JO40_06010 IPR038475 RecG, C-terminal domain superfamily JO40_06010 IPR033454 RecG, wedge domain JO40_06010 IPR011545 DEAD/DEAH box helicase domain JO40_06010 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_06010 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06010 IPR012340 Nucleic acid-binding, OB-fold JO40_06010 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain JO40_06025 IPR034160 DNA gyrase subunit B, TOPRIM domain JO40_06025 IPR006171 TOPRIM domain JO40_06025 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 JO40_06025 IPR018522 DNA topoisomerase, type IIA, conserved site JO40_06025 IPR011557 DNA gyrase, subunit B JO40_06025 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_06025 IPR003594 Histidine kinase/HSP90-like ATPase JO40_06025 IPR001241 DNA topoisomerase, type IIA JO40_06025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_06025 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_06025 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO40_06025 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal JO40_06025 IPR002288 DNA gyrase B subunit, C-terminal JO40_06030 IPR038454 DnaA, N-terminal domain superfamily JO40_06030 IPR010921 Trp repressor/replication initiator JO40_06030 IPR001957 Chromosomal replication control, initiator DnaA JO40_06030 IPR020591 Chromosomal replication control, initiator DnaA-like JO40_06030 IPR018312 Chromosomal replication control, initiator DnaA, conserved site JO40_06030 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06030 IPR013317 Chromosomal replication initiator protein DnaA JO40_06030 IPR003593 AAA+ ATPase domain JO40_06030 IPR013159 Chromosomal replication initiator, DnaA C-terminal JO40_06030 IPR024633 DnaA N-terminal domain JO40_06035 IPR003593 AAA+ ATPase domain JO40_06035 IPR041569 AAA ATPase, AAA+ lid domain JO40_06035 IPR037219 Peptidase M41-like JO40_06035 IPR000642 Peptidase M41 JO40_06035 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06035 IPR005936 Peptidase, FtsH JO40_06035 IPR003960 ATPase, AAA-type, conserved site JO40_06035 IPR003959 ATPase, AAA-type, core JO40_06050 IPR027256 P-type ATPase, subfamily IB JO40_06050 IPR001757 P-type ATPase JO40_06050 IPR023299 P-type ATPase, cytoplasmic domain N JO40_06050 IPR008250 P-type ATPase, A domain superfamily JO40_06050 IPR018303 P-type ATPase, phosphorylation site JO40_06050 IPR023298 P-type ATPase, transmembrane domain superfamily JO40_06050 IPR036412 HAD-like superfamily JO40_06050 IPR023214 HAD superfamily JO40_06070 IPR016187 C-type lectin fold JO40_06070 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_06070 IPR005532 Sulfatase-modifying factor enzyme JO40_06080 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO40_06080 IPR017871 ABC transporter, conserved site JO40_06080 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06080 IPR003439 ABC transporter-like JO40_06080 IPR003838 ABC transporter permease protein domain JO40_06080 IPR003593 AAA+ ATPase domain JO40_06080 IPR025857 MacB-like periplasmic core domain JO40_06085 IPR003495 CobW/HypB/UreG, nucleotide-binding domain JO40_06085 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06085 IPR004400 Urease accessory protein UreG JO40_06105 IPR011057 Mss4-like superfamily JO40_06105 IPR002579 Peptide methionine sulphoxide reductase MrsB JO40_06105 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily JO40_06105 IPR002569 Peptide methionine sulphoxide reductase MsrA JO40_06105 IPR028427 Peptide methionine sulfoxide reductase JO40_06125 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_06125 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain JO40_06125 IPR036291 NAD(P)-binding domain superfamily JO40_06140 IPR003675 CAAX prenyl protease 2 JO40_06150 IPR015424 Pyridoxal phosphate-dependent transferase JO40_06150 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_06150 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase JO40_06150 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_06160 IPR002888 [2Fe-2S]-binding JO40_06160 IPR012675 Beta-grasp domain superfamily JO40_06160 IPR017606 4-hydroxybenzoyl-CoA reductase, gamma subunit JO40_06160 IPR036884 [2Fe-2S]-binding domain superfamily JO40_06160 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site JO40_06160 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain JO40_06160 IPR036010 2Fe-2S ferredoxin-like superfamily JO40_06215 IPR029510 Aldehyde dehydrogenase, glutamic acid active site JO40_06215 IPR016162 Aldehyde dehydrogenase, N-terminal JO40_06215 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent JO40_06215 IPR015590 Aldehyde dehydrogenase domain JO40_06215 IPR016161 Aldehyde/histidinol dehydrogenase JO40_06215 IPR016163 Aldehyde dehydrogenase, C-terminal JO40_06225 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO40_06225 IPR010186 Glycine reductase, selenoprotein B JO40_06230 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO40_06230 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site JO40_06230 IPR010186 Glycine reductase, selenoprotein B JO40_06235 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta JO40_06235 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta JO40_06240 IPR002915 DeoC/FbaB/ lacD aldolase JO40_06240 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase JO40_06240 IPR041720 Aldolase FbaB-like, archaeal-type JO40_06240 IPR013785 Aldolase-type TIM barrel JO40_06245 IPR036291 NAD(P)-binding domain superfamily JO40_06245 IPR014184 Formaldehyde dehydrogenase, glutathione-independent JO40_06245 IPR011032 GroES-like superfamily JO40_06245 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain JO40_06245 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site JO40_06245 IPR013154 Alcohol dehydrogenase, N-terminal JO40_06250 IPR011265 GABA permease JO40_06250 IPR004840 Amino acid permease, conserved site JO40_06250 IPR004841 Amino acid permease/ SLC12A domain JO40_06255 IPR023468 Riboflavin kinase JO40_06255 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic JO40_06255 IPR023465 Riboflavin kinase domain superfamily JO40_06260 IPR008279 PEP-utilising enzyme, mobile domain JO40_06260 IPR040442 Pyruvate kinase-like domain superfamily JO40_06260 IPR036618 PtsI, HPr-binding domain superfamily JO40_06260 IPR008731 Phosphotransferase system, enzyme I N-terminal JO40_06260 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_06260 IPR018274 PEP-utilising enzyme, active site JO40_06260 IPR006318 Phosphotransferase system, enzyme I-like JO40_06260 IPR000121 PEP-utilising enzyme, C-terminal JO40_06260 IPR024692 Phosphotransferase system, enzyme I JO40_06260 IPR023151 PEP-utilising enzyme, conserved site JO40_06260 IPR036637 Phosphohistidine domain superfamily JO40_06265 IPR005225 Small GTP-binding protein domain JO40_06265 IPR006073 GTP binding domain JO40_06265 IPR032859 GTPase Der, C-terminal KH-domain-like JO40_06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06265 IPR015946 K homology domain-like, alpha/beta JO40_06265 IPR016484 GTP-binding protein EngA JO40_06265 IPR031166 EngA-type guanine nucleotide-binding (G) domain JO40_06280 IPR003660 HAMP domain JO40_06280 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_06280 IPR029151 Periplasmic sensor-like domain superfamily JO40_06280 IPR033479 Double Cache domain 1 JO40_06285 IPR001539 Peptidase U32 JO40_06285 IPR020988 Peptidase U32, collagenase JO40_06290 IPR039421 Type I protein exporter JO40_06290 IPR011527 ABC transporter type 1, transmembrane domain JO40_06290 IPR017871 ABC transporter, conserved site JO40_06290 IPR003439 ABC transporter-like JO40_06290 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_06290 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06290 IPR003593 AAA+ ATPase domain JO40_06295 IPR000943 RNA polymerase sigma-70 JO40_06295 IPR014284 RNA polymerase sigma-70 like domain JO40_06295 IPR013325 RNA polymerase sigma factor, region 2 JO40_06295 IPR013324 RNA polymerase sigma factor, region 3/4-like JO40_06295 IPR012760 RNA polymerase sigma factor RpoD, C-terminal JO40_06295 IPR028630 RNA polymerase sigma factor RpoD JO40_06295 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_06295 IPR007630 RNA polymerase sigma-70 region 4 JO40_06295 IPR007624 RNA polymerase sigma-70 region 3 JO40_06295 IPR009042 RNA polymerase sigma-70 region 1.2 JO40_06295 IPR007627 RNA polymerase sigma-70 region 2 JO40_06295 IPR042189 Sigma-70 factor, region 1.1 superfamily JO40_06295 IPR007127 RNA polymerase sigma factor 70, region 1.1 JO40_06300 IPR013785 Aldolase-type TIM barrel JO40_06300 IPR007197 Radical SAM JO40_06300 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase JO40_06305 IPR036264 Bacterial exopeptidase dimerisation domain JO40_06305 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO40_06305 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria JO40_06305 IPR002933 Peptidase M20 JO40_06305 IPR011650 Peptidase M20, dimerisation domain JO40_06310 IPR014710 RmlC-like jelly roll fold JO40_06310 IPR012318 Crp-type HTH domain JO40_06310 IPR018488 Cyclic nucleotide-binding, conserved site JO40_06310 IPR018490 Cyclic nucleotide-binding-like JO40_06310 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_06310 IPR000595 Cyclic nucleotide-binding domain JO40_06310 IPR036390 Winged helix DNA-binding domain superfamily JO40_06325 IPR035966 Phosphofructokinase superfamily JO40_06325 IPR000023 Phosphofructokinase domain JO40_06325 IPR022953 ATP-dependent 6-phosphofructokinase JO40_06325 IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108-type JO40_06355 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06355 IPR018022 IPP transferase JO40_06355 IPR039657 Dimethylallyltransferase JO40_06360 IPR036161 RPB6/omega subunit-like superfamily JO40_06360 IPR006110 RNA polymerase, subunit omega/K/RPB6 JO40_06370 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_06370 IPR030873 Beta-barrel assembly-enhancing protease JO40_06370 IPR001915 Peptidase M48 JO40_06375 IPR029151 Periplasmic sensor-like domain superfamily JO40_06375 IPR029787 Nucleotide cyclase JO40_06375 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO40_06375 IPR003660 HAMP domain JO40_06375 IPR033479 Double Cache domain 1 JO40_06485 IPR012347 Ferritin-like JO40_06485 IPR003251 Rubrerythrin JO40_06485 IPR024934 Rubredoxin-like domain JO40_06485 IPR009078 Ferritin-like superfamily JO40_06485 IPR009040 Ferritin-like diiron domain JO40_06490 IPR004589 DNA helicase, ATP-dependent, RecQ type JO40_06490 IPR011545 DEAD/DEAH box helicase domain JO40_06490 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial JO40_06490 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_06490 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06490 IPR001650 Helicase, C-terminal JO40_06490 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain JO40_06490 IPR010997 HRDC-like superfamily JO40_06490 IPR018982 RQC domain JO40_06490 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_06490 IPR002121 HRDC domain JO40_06495 IPR022572 DNA replication/recombination mediator RecO, N-terminal JO40_06495 IPR003717 Recombination protein O, RecO JO40_06495 IPR037278 ARFGAP/RecO-like zinc finger JO40_06495 IPR012340 Nucleic acid-binding, OB-fold JO40_06505 IPR002616 tRNA-guanine(15) transglycosylase-like JO40_06505 IPR036511 Queuine tRNA-ribosyltransferase-like JO40_06505 IPR004803 tRNA-guanine transglycosylase JO40_06560 IPR002915 DeoC/FbaB/ lacD aldolase JO40_06560 IPR028581 Deoxyribose-phosphate aldolase type I JO40_06560 IPR011343 Deoxyribose-phosphate aldolase JO40_06560 IPR013785 Aldolase-type TIM barrel JO40_06565 IPR009078 Ferritin-like superfamily JO40_06565 IPR001519 Ferritin JO40_06565 IPR012347 Ferritin-like JO40_06565 IPR008331 Ferritin/DPS protein domain JO40_06565 IPR009040 Ferritin-like diiron domain JO40_06565 IPR041719 Ferritin, prokaryotic-type JO40_06570 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06570 IPR017871 ABC transporter, conserved site JO40_06570 IPR003439 ABC transporter-like JO40_06570 IPR003593 AAA+ ATPase domain JO40_06585 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO40_06585 IPR011650 Peptidase M20, dimerisation domain JO40_06585 IPR002933 Peptidase M20 JO40_06585 IPR036264 Bacterial exopeptidase dimerisation domain JO40_06585 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria JO40_06590 IPR000644 CBS domain JO40_06590 IPR006668 Magnesium transporter, MgtE intracellular domain JO40_06590 IPR006667 SLC41 divalent cation transporters, integral membrane domain JO40_06590 IPR038076 MgtE, N-terminal domain superfamily JO40_06590 IPR006669 Magnesium transporter MgtE JO40_06590 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily JO40_06590 IPR038048 Magnesium transporter MgtE, transmembrane domain JO40_06600 IPR041492 Haloacid dehalogenase-like hydrolase JO40_06600 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic JO40_06600 IPR023198 Phosphoglycolate phosphatase-like, domain 2 JO40_06600 IPR023214 HAD superfamily JO40_06600 IPR006549 HAD-superfamily hydrolase,subfamily IIIA JO40_06600 IPR037512 Phosphoglycolate phosphatase, prokaryotic JO40_06600 IPR036412 HAD-like superfamily JO40_06600 IPR006439 HAD hydrolase, subfamily IA JO40_06605 IPR023753 FAD/NAD(P)-binding domain JO40_06605 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_06605 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site JO40_06605 IPR005982 Thioredoxin reductase JO40_06610 IPR013766 Thioredoxin domain JO40_06610 IPR017937 Thioredoxin, conserved site JO40_06610 IPR036249 Thioredoxin-like superfamily JO40_06610 IPR005746 Thioredoxin JO40_06615 IPR006812 Glycine reductase complex selenoprotein A JO40_06620 IPR006812 Glycine reductase complex selenoprotein A JO40_06630 IPR037294 ABC transporter, BtuC-like JO40_06630 IPR000522 ABC transporter, permease protein, BtuC-like JO40_06645 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06645 IPR000523 Magnesium chelatase ChlI domain JO40_06645 IPR011776 Magnesium chelatase, ATPase subunit D JO40_06645 IPR041628 ChlI/MoxR, AAA lid domain JO40_06645 IPR036465 von Willebrand factor A-like domain superfamily JO40_06645 IPR002035 von Willebrand factor, type A JO40_06645 IPR003593 AAA+ ATPase domain JO40_06645 IPR041702 Magnesium-chelatase BchD/ChlD, VWA domain JO40_06650 IPR000523 Magnesium chelatase ChlI domain JO40_06650 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06650 IPR003593 AAA+ ATPase domain JO40_06650 IPR041628 ChlI/MoxR, AAA lid domain JO40_06650 IPR011775 Magnesium chelatase, ATPase subunit I JO40_06675 IPR040980 SWI2/SNF2 ATPase JO40_06675 IPR004473 Restriction endonuclease, type I, HsdR JO40_06675 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal JO40_06675 IPR021810 Protein of unknown function DUF3387 JO40_06675 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_06675 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06685 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal JO40_06685 IPR004770 Na+/H+ antiporter NhaC JO40_06690 IPR000462 CDP-alcohol phosphatidyltransferase JO40_06690 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase JO40_06695 IPR003173 Transcriptional coactivator p15 (PC4) JO40_06695 IPR017154 Uncharacterised conserved protein UCP037246 JO40_06700 IPR036397 Ribonuclease H superfamily JO40_06700 IPR002156 Ribonuclease H domain JO40_06700 IPR022892 Ribonuclease HI JO40_06700 IPR012337 Ribonuclease H-like superfamily JO40_06710 IPR003720 tRNA sulfurtransferase ThiI JO40_06710 IPR004114 THUMP domain JO40_06710 IPR020536 Thil, AANH domain JO40_06710 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_06735 IPR001626 ABC transporter, TroCD-like JO40_06735 IPR037294 ABC transporter, BtuC-like JO40_06740 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06740 IPR003439 ABC transporter-like JO40_06740 IPR003593 AAA+ ATPase domain JO40_06750 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_06750 IPR011527 ABC transporter type 1, transmembrane domain JO40_06750 IPR003593 AAA+ ATPase domain JO40_06750 IPR003439 ABC transporter-like JO40_06750 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06750 IPR017871 ABC transporter, conserved site JO40_06755 IPR003593 AAA+ ATPase domain JO40_06755 IPR011527 ABC transporter type 1, transmembrane domain JO40_06755 IPR003439 ABC transporter-like JO40_06755 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC JO40_06755 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_06755 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06785 IPR018257 Ribosomal protein L19, conserved site JO40_06785 IPR038657 Ribosomal protein L19 superfamily JO40_06785 IPR001857 Ribosomal protein L19 JO40_06785 IPR008991 Translation protein SH3-like domain superfamily JO40_06790 IPR029028 Alpha/beta knot methyltransferases JO40_06790 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria JO40_06790 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal JO40_06790 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain JO40_06790 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO40_06795 IPR011033 PRC-barrel-like superfamily JO40_06795 IPR002676 RimM, N-terminal JO40_06795 IPR009000 Translation protein, beta-barrel domain superfamily JO40_06795 IPR036976 RimM, N-terminal domain superfamily JO40_06795 IPR011961 16S rRNA processing protein RimM JO40_06800 IPR020627 Uncharacterised protein family UPF0109 JO40_06800 IPR009019 K homology domain superfamily, prokaryotic type JO40_06800 IPR015946 K homology domain-like, alpha/beta JO40_06805 IPR023803 Ribosomal protein S16 domain superfamily JO40_06805 IPR000307 Ribosomal protein S16 JO40_06810 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily JO40_06810 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal JO40_06810 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like JO40_06810 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic JO40_06825 IPR003838 ABC transporter permease protein domain JO40_06825 IPR003593 AAA+ ATPase domain JO40_06825 IPR003439 ABC transporter-like JO40_06825 IPR025857 MacB-like periplasmic core domain JO40_06825 IPR017871 ABC transporter, conserved site JO40_06825 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO40_06825 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06830 IPR003439 ABC transporter-like JO40_06830 IPR003593 AAA+ ATPase domain JO40_06830 IPR015854 ABC transporter, lipoprotein release, LolD JO40_06830 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06830 IPR017871 ABC transporter, conserved site JO40_06835 IPR036986 RNA-binding S4 domain superfamily JO40_06835 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_06835 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site JO40_06835 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F JO40_06835 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_06835 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain JO40_06835 IPR002942 RNA-binding S4 domain JO40_06845 IPR003768 Segregation and condensation protein A JO40_06850 IPR003593 AAA+ ATPase domain JO40_06850 IPR013765 DNA recombination and repair protein RecA JO40_06850 IPR020584 DNA recombination/repair protein RecA, conserved site JO40_06850 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain JO40_06850 IPR023400 DNA recombination and repair protein RecA, C-terminal JO40_06850 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface JO40_06850 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_06860 IPR023753 FAD/NAD(P)-binding domain JO40_06860 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_06860 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal JO40_06860 IPR013785 Aldolase-type TIM barrel JO40_06900 IPR005841 Alpha-D-phosphohexomutase superfamily JO40_06900 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III JO40_06900 IPR006352 Phosphoglucosamine mutase, bacterial type JO40_06900 IPR005843 Alpha-D-phosphohexomutase, C-terminal JO40_06900 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I JO40_06900 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II JO40_06900 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III JO40_06900 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily JO40_06900 IPR016066 Alpha-D-phosphohexomutase, conserved site JO40_06905 IPR003416 MgtC/SapB/SrpB/YhiD family JO40_06920 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_06920 IPR011639 Restriction modification methylase Eco57I JO40_06920 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_06925 IPR019264 Domain of unknown function DUF2179 JO40_06925 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal JO40_06925 IPR003740 Uncharacterised membrane protein YitT JO40_06930 IPR002528 Multi antimicrobial extrusion protein JO40_06935 IPR029787 Nucleotide cyclase JO40_06935 IPR029151 Periplasmic sensor-like domain superfamily JO40_06935 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO40_06935 IPR033479 Double Cache domain 1 JO40_06935 IPR003660 HAMP domain JO40_06940 IPR000890 Aliphatic acid kinase, short-chain JO40_06940 IPR004372 Acetate/propionate kinase JO40_06940 IPR023865 Aliphatic acid kinase, short-chain, conserved site JO40_06945 IPR009003 Peptidase S1, PA clan JO40_06945 IPR001940 Peptidase S1C JO40_06965 IPR011032 GroES-like superfamily JO40_06965 IPR018369 Chaperonin GroES, conserved site JO40_06965 IPR037124 GroES chaperonin superfamily JO40_06965 IPR020818 GroES chaperonin family JO40_06970 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_06970 IPR014284 RNA polymerase sigma-70 like domain JO40_06970 IPR000943 RNA polymerase sigma-70 JO40_06970 IPR009042 RNA polymerase sigma-70 region 1.2 JO40_06970 IPR007627 RNA polymerase sigma-70 region 2 JO40_06970 IPR028630 RNA polymerase sigma factor RpoD JO40_06970 IPR012760 RNA polymerase sigma factor RpoD, C-terminal JO40_06970 IPR013324 RNA polymerase sigma factor, region 3/4-like JO40_06970 IPR007624 RNA polymerase sigma-70 region 3 JO40_06970 IPR007630 RNA polymerase sigma-70 region 4 JO40_06970 IPR013325 RNA polymerase sigma factor, region 2 JO40_06970 IPR007127 RNA polymerase sigma factor 70, region 1.1 JO40_06970 IPR042189 Sigma-70 factor, region 1.1 superfamily JO40_06975 IPR000241 Putative RNA methylase domain JO40_06975 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_06975 IPR004114 THUMP domain JO40_06975 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_06980 IPR002816 TraB family JO40_06980 IPR040230 Metalloprotease TIKI1/2-like JO40_06990 IPR038765 Papain-like cysteine peptidase superfamily JO40_06990 IPR000064 Endopeptidase, NLPC/P60 domain JO40_06995 IPR020845 AMP-binding, conserved site JO40_06995 IPR000873 AMP-dependent synthetase/ligase JO40_06995 IPR020459 AMP-binding JO40_06995 IPR042099 AMP-dependent synthetase-like superfamily JO40_06995 IPR025110 AMP-binding enzyme, C-terminal domain JO40_07005 IPR005517 Translation elongation factor EFG/EF2, domain IV JO40_07005 IPR004540 Translation elongation factor EFG/EF2 JO40_07005 IPR035649 EFG, domain V JO40_07005 IPR000640 Elongation factor EFG, domain V-like JO40_07005 IPR004161 Translation elongation factor EFTu-like, domain 2 JO40_07005 IPR031157 Tr-type G domain, conserved site JO40_07005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07005 IPR009022 Elongation factor G, domain III JO40_07005 IPR035647 EF-G domain III/V-like JO40_07005 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_07005 IPR009000 Translation protein, beta-barrel domain superfamily JO40_07005 IPR000795 Transcription factor, GTP-binding domain JO40_07005 IPR005225 Small GTP-binding protein domain JO40_07005 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_07005 IPR041095 Elongation Factor G, domain II JO40_07025 IPR000620 EamA domain JO40_07035 IPR002563 Flavin reductase like domain JO40_07035 IPR012349 FMN-binding split barrel JO40_07045 IPR029464 Type I restriction enzyme R protein, N-terminal domain JO40_07045 IPR013670 EcoEI R protein C-terminal domain JO40_07045 IPR006935 Helicase/UvrB, N-terminal JO40_07045 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_07045 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07045 IPR001650 Helicase, C-terminal JO40_07050 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain JO40_07050 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily JO40_07050 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_07050 IPR003356 DNA methylase, adenine-specific JO40_07050 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_07055 IPR012334 Pectin lyase fold JO40_07055 IPR036597 Fido-like domain superfamily JO40_07055 IPR003812 Fido domain JO40_07055 IPR024973 ESPR domain JO40_07055 IPR025157 Hemagglutinin repeat JO40_07055 IPR038765 Papain-like cysteine peptidase superfamily JO40_07055 IPR011050 Pectin lyase fold/virulence factor JO40_07055 IPR008638 Filamentous haemagglutinin, N-terminal JO40_07055 IPR040198 Fido domain-containing protein JO40_07055 IPR006473 Peptidase C58, YopT-type domain JO40_07055 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen JO40_07060 IPR000055 Restriction endonuclease, type I, HsdS JO40_07065 IPR013762 Integrase-like, catalytic domain superfamily JO40_07065 IPR002104 Integrase, catalytic domain JO40_07065 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO40_07065 IPR010998 Integrase/recombinase, N-terminal JO40_07065 IPR004107 Integrase, SAM-like, N-terminal JO40_07070 IPR000055 Restriction endonuclease, type I, HsdS JO40_07075 IPR000055 Restriction endonuclease, type I, HsdS JO40_07085 IPR018211 Alcohol dehydrogenase, iron-type, conserved site JO40_07085 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA JO40_07120 IPR003719 Phenazine biosynthesis PhzF protein JO40_07140 IPR036812 NADP-dependent oxidoreductase domain superfamily JO40_07140 IPR023210 NADP-dependent oxidoreductase domain JO40_07140 IPR018170 Aldo/keto reductase, conserved site JO40_07140 IPR020471 Aldo/keto reductase JO40_07190 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO40_07190 IPR001387 Cro/C1-type helix-turn-helix domain JO40_07195 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class JO40_07195 IPR002941 DNA methylase N-4/N-6 JO40_07195 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_07195 IPR001091 Restriction/modification DNA-methylase JO40_07195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_07200 IPR006935 Helicase/UvrB, N-terminal JO40_07200 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07200 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_07205 IPR029039 Flavoprotein-like superfamily JO40_07205 IPR003680 Flavodoxin-like fold JO40_07220 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily JO40_07220 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family JO40_07220 IPR004785 Ribose 5-phosphate isomerase B JO40_07225 IPR022383 Lactate/malate dehydrogenase, C-terminal JO40_07225 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal JO40_07225 IPR018177 L-lactate dehydrogenase, active site JO40_07225 IPR011304 L-lactate dehydrogenase JO40_07225 IPR001236 Lactate/malate dehydrogenase, N-terminal JO40_07225 IPR001557 L-lactate/malate dehydrogenase JO40_07225 IPR036291 NAD(P)-binding domain superfamily JO40_07230 IPR002528 Multi antimicrobial extrusion protein JO40_07235 IPR036637 Phosphohistidine domain superfamily JO40_07235 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding JO40_07235 IPR008279 PEP-utilising enzyme, mobile domain JO40_07235 IPR013815 ATP-grasp fold, subdomain 1 JO40_07240 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO40_07240 IPR013570 Transcription regulator YsiA, C-terminal JO40_07240 IPR001647 DNA-binding HTH domain, TetR-type JO40_07240 IPR009057 Homeobox-like domain superfamily JO40_07255 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO40_07255 IPR005840 Ribosomal protein S12 methylthiotransferase RimO JO40_07255 IPR041582 RimO, TRAM domain JO40_07255 IPR013848 Methylthiotransferase, N-terminal JO40_07255 IPR007197 Radical SAM JO40_07255 IPR005839 Methylthiotransferase JO40_07255 IPR006638 Elp3/MiaB/NifB JO40_07255 IPR023404 Radical SAM, alpha/beta horseshoe JO40_07255 IPR020612 Methylthiotransferase, conserved site JO40_07275 IPR024932 Flavin transferase ApbE JO40_07275 IPR003374 ApbE-like superfamily JO40_07275 IPR042159 Flavin-trafficking protein ApbE JO40_07280 IPR001872 Peptidase A8, signal peptidase II JO40_07285 IPR018490 Cyclic nucleotide-binding-like JO40_07285 IPR018488 Cyclic nucleotide-binding, conserved site JO40_07285 IPR036390 Winged helix DNA-binding domain superfamily JO40_07285 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_07285 IPR014710 RmlC-like jelly roll fold JO40_07285 IPR000595 Cyclic nucleotide-binding domain JO40_07285 IPR012318 Crp-type HTH domain JO40_07300 IPR010280 (Uracil-5)-methyltransferase family JO40_07300 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_07300 IPR030390 RNA methyltransferase TrmA, active site JO40_07300 IPR012340 Nucleic acid-binding, OB-fold JO40_07320 IPR005665 Protein-export membrane protein SecF, bacterial JO40_07320 IPR022645 Protein-export membrane protein SecD/SecF, bacterial JO40_07320 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial JO40_07325 IPR022645 Protein-export membrane protein SecD/SecF, bacterial JO40_07325 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial JO40_07325 IPR005791 Protein translocase subunit SecD JO40_07330 IPR003849 Preprotein translocase YajC JO40_07340 IPR012340 Nucleic acid-binding, OB-fold JO40_07340 IPR011344 Single-stranded DNA-binding protein JO40_07340 IPR000424 Primosome PriB/single-strand DNA-binding JO40_07350 IPR018236 SAICAR synthetase, conserved site JO40_07350 IPR028923 SAICAR synthetase/ADE2, N-terminal JO40_07355 IPR035893 PurE domain superfamily JO40_07355 IPR024694 PurE, prokaryotic type JO40_07355 IPR000031 PurE domain JO40_07355 IPR033626 Class II PurE JO40_07365 IPR009212 Methylthioribose kinase JO40_07365 IPR011009 Protein kinase-like domain superfamily JO40_07365 IPR002575 Aminoglycoside phosphotransferase JO40_07370 IPR004506 tRNA-specific 2-thiouridylase JO40_07370 IPR023382 Adenine nucleotide alpha hydrolase-like domains JO40_07370 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_07380 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase JO40_07380 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase JO40_07380 IPR029056 Ribokinase-like JO40_07390 IPR003593 AAA+ ATPase domain JO40_07390 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07390 IPR017871 ABC transporter, conserved site JO40_07390 IPR003439 ABC transporter-like JO40_07420 IPR036190 Urocanase superfamily JO40_07420 IPR035085 Urocanase, Rossmann-like domain JO40_07420 IPR035400 Urocanase, N-terminal domain JO40_07420 IPR038364 Urocanase, central domain superfamily JO40_07420 IPR023636 Urocanase conserved site JO40_07420 IPR023637 Urocanase JO40_07420 IPR035401 Urocanase, C-terminal domain JO40_07435 IPR029033 Histidine phosphatase superfamily JO40_07435 IPR013078 Histidine phosphatase superfamily, clade-1 JO40_07440 IPR001943 UVR domain JO40_07440 IPR010994 RuvA domain 2-like JO40_07440 IPR035901 GIY-YIG endonuclease superfamily JO40_07440 IPR000305 GIY-YIG endonuclease JO40_07440 IPR038476 UvrC homology region 2 superfamily JO40_07440 IPR036876 UVR domain superfamily JO40_07440 IPR004791 UvrABC system, subunit C JO40_07440 IPR001162 UvrC family homology region JO40_07445 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_07445 IPR018631 AAA-ATPase-like domain JO40_07450 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain JO40_07450 IPR004534 L-seryl-tRNA(Sec) selenium transferase JO40_07450 IPR018319 L-seryl-tRNA selenium transferase-like JO40_07450 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_07450 IPR015424 Pyridoxal phosphate-dependent transferase JO40_07455 IPR002563 Flavin reductase like domain JO40_07455 IPR012349 FMN-binding split barrel JO40_07470 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07470 IPR003593 AAA+ ATPase domain JO40_07470 IPR003838 ABC transporter permease protein domain JO40_07470 IPR025857 MacB-like periplasmic core domain JO40_07470 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO40_07470 IPR003439 ABC transporter-like JO40_07470 IPR017871 ABC transporter, conserved site JO40_07495 IPR013976 Metal-dependent hydrolase HDOD JO40_07500 IPR029035 DHS-like NAD/FAD-binding domain superfamily JO40_07500 IPR003000 Sirtuin family JO40_07500 IPR026591 Sirtuin, catalytic core small domain superfamily JO40_07500 IPR028628 Sirtuin, class U JO40_07500 IPR026590 Sirtuin family, catalytic core domain JO40_07510 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain JO40_07510 IPR001406 Pseudouridine synthase I, TruA JO40_07510 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_07510 IPR020095 Pseudouridine synthase I, TruA, C-terminal JO40_07515 IPR018708 Protein of unknown function DUF2225 JO40_07530 IPR029001 Inosine triphosphate pyrophosphatase-like JO40_07530 IPR002637 Ham1-like protein JO40_07530 IPR020922 dITP/XTP pyrophosphatase JO40_07535 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_07535 IPR029151 Periplasmic sensor-like domain superfamily JO40_07535 IPR003660 HAMP domain JO40_07535 IPR033479 Double Cache domain 1 JO40_07585 IPR003593 AAA+ ATPase domain JO40_07585 IPR011527 ABC transporter type 1, transmembrane domain JO40_07585 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_07585 IPR003439 ABC transporter-like JO40_07585 IPR039421 Type I protein exporter JO40_07585 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07585 IPR017871 ABC transporter, conserved site JO40_07600 IPR036822 Copper homeostasis (CutC) domain superfamily JO40_07600 IPR005627 Copper homeostasis protein CutC JO40_07600 IPR023648 Copper homeostasis CutC domain JO40_07625 IPR042095 Sulfatase-modifying factor enzyme superfamily JO40_07625 IPR016187 C-type lectin fold JO40_07625 IPR005532 Sulfatase-modifying factor enzyme JO40_07660 IPR008302 Uncharacterised conserved protein UCP016719 JO40_07680 IPR001320 Ionotropic glutamate receptor JO40_07680 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF JO40_07680 IPR018313 Solute-binding protein family 3, conserved site JO40_07685 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal JO40_07685 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal JO40_07685 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO40_07685 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO40_07685 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent JO40_07685 IPR036291 NAD(P)-binding domain superfamily JO40_07690 IPR004125 Signal recognition particle, SRP54 subunit, M-domain JO40_07690 IPR003593 AAA+ ATPase domain JO40_07690 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily JO40_07690 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07690 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily JO40_07690 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO40_07690 IPR022941 Signal recognition particle, SRP54 subunit JO40_07690 IPR004780 Signal recognition particle protein JO40_07690 IPR013822 Signal recognition particle SRP54, helical bundle JO40_07695 IPR037187 DksA, N-terminal domain superfamily JO40_07695 IPR000962 Zinc finger, DksA/TraR C4-type JO40_07695 IPR020458 Zinc finger, DksA/TraR C4-type conserved site JO40_07700 IPR004368 Translation initiation factor IF-1 JO40_07700 IPR012340 Nucleic acid-binding, OB-fold JO40_07700 IPR006196 RNA-binding domain, S1, IF1 type JO40_07700 IPR022967 RNA-binding domain, S1 JO40_07705 IPR036869 Chaperone J-domain superfamily JO40_07705 IPR012724 Chaperone DnaJ JO40_07705 IPR002939 Chaperone DnaJ, C-terminal JO40_07705 IPR001623 DnaJ domain JO40_07705 IPR018253 DnaJ domain, conserved site JO40_07705 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO40_07705 IPR008971 HSP40/DnaJ peptide-binding JO40_07705 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO40_07710 IPR011817 Uridylate kinase JO40_07710 IPR001048 Aspartate/glutamate/uridylate kinase JO40_07710 IPR015963 Uridylate kinase, bacteria JO40_07710 IPR036393 Acetylglutamate kinase-like superfamily JO40_07715 IPR029028 Alpha/beta knot methyltransferases JO40_07715 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO40_07715 IPR001537 tRNA/rRNA methyltransferase, SpoU type JO40_07715 IPR004384 RNA methyltransferase TrmJ/LasT JO40_07730 IPR003029 S1 domain JO40_07730 IPR022967 RNA-binding domain, S1 JO40_07730 IPR000110 Ribosomal protein S1 JO40_07730 IPR012340 Nucleic acid-binding, OB-fold JO40_07735 IPR003593 AAA+ ATPase domain JO40_07735 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07735 IPR025944 Sigma-54 interaction domain, conserved site JO40_07735 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO40_07735 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_07735 IPR011006 CheY-like superfamily JO40_07735 IPR002078 RNA polymerase sigma factor 54 interaction domain JO40_07735 IPR001789 Signal transduction response regulator, receiver domain JO40_07735 IPR002197 DNA binding HTH domain, Fis-type JO40_07735 IPR009057 Homeobox-like domain superfamily JO40_07740 IPR013026 Tetratricopeptide repeat-containing domain JO40_07740 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_07755 IPR029787 Nucleotide cyclase JO40_07755 IPR035919 EAL domain superfamily JO40_07755 IPR005330 MHYT domain JO40_07755 IPR000160 GGDEF domain JO40_07755 IPR001633 EAL domain JO40_07760 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr JO40_07760 IPR007197 Radical SAM JO40_07760 IPR006638 Elp3/MiaB/NifB JO40_07760 IPR040072 Methyltransferase (Class A) JO40_07760 IPR027492 Dual-specificity RNA methyltransferase RlmN JO40_07760 IPR013785 Aldolase-type TIM barrel JO40_07785 IPR006056 RidA family JO40_07785 IPR035959 RutC-like superfamily JO40_07785 IPR006175 YjgF/YER057c/UK114 family JO40_07785 IPR019897 RidA, conserved site JO40_07795 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07795 IPR029062 Class I glutamine amidotransferase-like JO40_07795 IPR004459 Cobyric acid synthase CobQ JO40_07795 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 JO40_07795 IPR017929 CobB/CobQ glutamine amidotransferase JO40_07795 IPR011698 CobB/CobQ-like glutamine amidotransferase JO40_07815 IPR003593 AAA+ ATPase domain JO40_07815 IPR003439 ABC transporter-like JO40_07815 IPR017871 ABC transporter, conserved site JO40_07815 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07835 IPR003594 Histidine kinase/HSP90-like ATPase JO40_07835 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_07835 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain JO40_07840 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_07840 IPR028299 ClpA/B, conserved site 2 JO40_07840 IPR041546 ClpA/ClpB, AAA lid domain JO40_07840 IPR004176 Clp, N-terminal JO40_07840 IPR018368 ClpA/B, conserved site 1 JO40_07840 IPR036628 Clp, N-terminal domain superfamily JO40_07840 IPR019489 Clp ATPase, C-terminal JO40_07840 IPR003593 AAA+ ATPase domain JO40_07840 IPR003959 ATPase, AAA-type, core JO40_07840 IPR017730 Chaperonin ClpB JO40_07840 IPR001270 ClpA/B family JO40_07865 IPR003848 Domain of unknown function DUF218 JO40_07875 IPR008991 Translation protein SH3-like domain superfamily JO40_07875 IPR013185 Translation elongation factor, KOW-like JO40_07875 IPR020599 Translation elongation factor P/YeiP JO40_07875 IPR014722 Ribosomal protein L2, domain 2 JO40_07875 IPR012340 Nucleic acid-binding, OB-fold JO40_07875 IPR015365 Elongation factor P, C-terminal JO40_07875 IPR011768 Translation elongation factor P JO40_07875 IPR001059 Translation elongation factor P/YeiP, central JO40_07890 IPR005235 Metallophosphoesterase, YmdB-like JO40_07890 IPR029052 Metallo-dependent phosphatase-like JO40_07900 IPR001126 UmuC domain JO40_07900 IPR024728 DNA polymerase type-Y, HhH motif JO40_07900 IPR022880 DNA polymerase IV JO40_07900 IPR017961 DNA polymerase, Y-family, little finger domain JO40_07900 IPR036775 DNA polymerase, Y-family, little finger domain superfamily JO40_07910 IPR002939 Chaperone DnaJ, C-terminal JO40_07910 IPR001623 DnaJ domain JO40_07910 IPR018253 DnaJ domain, conserved site JO40_07910 IPR012724 Chaperone DnaJ JO40_07910 IPR008971 HSP40/DnaJ peptide-binding JO40_07910 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO40_07910 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO40_07910 IPR036869 Chaperone J-domain superfamily JO40_07920 IPR024045 NusG, domain 2 JO40_07920 IPR038690 NusG, domain 2 superfamily JO40_07925 IPR002641 Patatin-like phospholipase domain JO40_07925 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase JO40_07925 IPR001423 Lysophospholipase patatin, conserved site JO40_07930 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily JO40_07930 IPR030395 Glycerophosphodiester phosphodiesterase domain JO40_07935 IPR007621 TPM domain JO40_07940 IPR007156 LemA JO40_07940 IPR023353 LemA-like domain superfamily JO40_07945 IPR005148 Arginyl tRNA synthetase N-terminal domain JO40_07945 IPR001278 Arginine-tRNA ligase JO40_07945 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily JO40_07945 IPR035684 Arginyl-tRNA synthetase, catalytic core domain JO40_07945 IPR008909 DALR anticodon binding JO40_07945 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_07945 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_07945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_07950 IPR005222 Competence protein ComF JO40_07950 IPR000836 Phosphoribosyltransferase domain JO40_07950 IPR029057 Phosphoribosyltransferase-like JO40_07955 IPR037518 MPN domain JO40_07955 IPR010994 RuvA domain 2-like JO40_07955 IPR001405 Uncharacterised protein family UPF0758 JO40_07955 IPR025657 RadC-like JAB domain JO40_07955 IPR020891 Uncharacterised protein family UPF0758, conserved site JO40_07960 IPR012338 Beta-lactamase/transpeptidase-like JO40_07960 IPR015956 Penicillin-binding protein, C-terminal domain superfamily JO40_07960 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A JO40_07960 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal JO40_07960 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily JO40_07960 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal JO40_07970 IPR013785 Aldolase-type TIM barrel JO40_07970 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 JO40_07970 IPR024920 Dihydroorotate dehydrogenase, class 1 JO40_07970 IPR001295 Dihydroorotate dehydrogenase, conserved site JO40_07970 IPR005720 Dihydroorotate dehydrogenase domain JO40_07970 IPR033888 Dihydroorotate dehydrogenase, class 1B JO40_07975 IPR023271 Aquaporin-like JO40_07975 IPR000292 Formate/nitrite transporter JO40_07975 IPR024002 Formate/nitrite transporter, conserved site JO40_07980 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site JO40_07980 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO40_07980 IPR036291 NAD(P)-binding domain superfamily JO40_07980 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO40_07980 IPR015815 3-hydroxyisobutyrate dehydrogenase-related JO40_07980 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain JO40_07980 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding JO40_07985 IPR029057 Phosphoribosyltransferase-like JO40_07985 IPR000836 Phosphoribosyltransferase domain JO40_07985 IPR023031 Orotate phosphoribosyltransferase JO40_07985 IPR004467 Orotate phosphoribosyl transferase domain JO40_07995 IPR001492 Flagellin JO40_07995 IPR001029 Flagellin, D0/D1 domain JO40_07995 IPR042187 Flagellin, C-terminal domain, subdomain 2 JO40_08000 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO40_08000 IPR019776 Flagellar basal body rod protein, conserved site JO40_08000 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO40_08000 IPR012834 Flagellar basal-body rod FlgG JO40_08000 IPR001444 Flagellar basal body rod protein, N-terminal JO40_08000 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO40_08005 IPR012834 Flagellar basal-body rod FlgG JO40_08005 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO40_08005 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO40_08005 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO40_08005 IPR001444 Flagellar basal body rod protein, N-terminal JO40_08005 IPR019776 Flagellar basal body rod protein, conserved site JO40_08010 IPR019301 Flagellar protein FlgJ, N-terminal JO40_08015 IPR001233 tRNA-splicing ligase, RtcB JO40_08015 IPR036025 tRNA-splicing ligase RtcB-like superfamily JO40_08080 IPR005897 Peptidase C39, ABC-type bacteriocin transporter JO40_08080 IPR005074 Peptidase C39, bacteriocin processing JO40_08080 IPR039421 Type I protein exporter JO40_08080 IPR003439 ABC transporter-like JO40_08080 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08080 IPR011527 ABC transporter type 1, transmembrane domain JO40_08080 IPR003593 AAA+ ATPase domain JO40_08080 IPR017871 ABC transporter, conserved site JO40_08080 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08090 IPR003439 ABC transporter-like JO40_08090 IPR011527 ABC transporter type 1, transmembrane domain JO40_08090 IPR039421 Type I protein exporter JO40_08090 IPR003593 AAA+ ATPase domain JO40_08090 IPR011917 ABC transporter, lipid A export, MsbA JO40_08090 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08090 IPR017871 ABC transporter, conserved site JO40_08090 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08095 IPR011527 ABC transporter type 1, transmembrane domain JO40_08095 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08095 IPR003439 ABC transporter-like JO40_08095 IPR017871 ABC transporter, conserved site JO40_08095 IPR003593 AAA+ ATPase domain JO40_08095 IPR039421 Type I protein exporter JO40_08095 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08095 IPR011917 ABC transporter, lipid A export, MsbA JO40_08115 IPR013572 Transcription regulator MAATS, C-terminal JO40_08115 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO40_08115 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO40_08115 IPR001647 DNA-binding HTH domain, TetR-type JO40_08115 IPR009057 Homeobox-like domain superfamily JO40_08120 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08120 IPR003593 AAA+ ATPase domain JO40_08120 IPR003439 ABC transporter-like JO40_08120 IPR017938 Riboflavin synthase-like beta-barrel JO40_08120 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08120 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO40_08120 IPR017927 FAD-binding domain, ferredoxin reductase-type JO40_08120 IPR013113 FAD-binding 9, siderophore-interacting JO40_08120 IPR017871 ABC transporter, conserved site JO40_08120 IPR011527 ABC transporter type 1, transmembrane domain JO40_08120 IPR007037 Siderophore-interacting protein, C-terminal domain JO40_08125 IPR017871 ABC transporter, conserved site JO40_08125 IPR039421 Type I protein exporter JO40_08125 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08125 IPR003439 ABC transporter-like JO40_08125 IPR003593 AAA+ ATPase domain JO40_08125 IPR011527 ABC transporter type 1, transmembrane domain JO40_08125 IPR011917 ABC transporter, lipid A export, MsbA JO40_08125 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08130 IPR003439 ABC transporter-like JO40_08130 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08130 IPR017871 ABC transporter, conserved site JO40_08130 IPR003593 AAA+ ATPase domain JO40_08145 IPR018631 AAA-ATPase-like domain JO40_08145 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_08165 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ JO40_08165 IPR029069 HotDog domain superfamily JO40_08165 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ JO40_08180 IPR000713 Mur ligase, N-terminal catalytic domain JO40_08180 IPR036615 Mur ligase, C-terminal domain superfamily JO40_08180 IPR013221 Mur ligase, central JO40_08180 IPR036565 Mur-like, catalytic domain superfamily JO40_08180 IPR035911 MurE/MurF, N-terminal JO40_08180 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase JO40_08180 IPR004101 Mur ligase, C-terminal JO40_08205 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like JO40_08210 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08210 IPR017871 ABC transporter, conserved site JO40_08210 IPR003593 AAA+ ATPase domain JO40_08210 IPR039421 Type I protein exporter JO40_08210 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08210 IPR003439 ABC transporter-like JO40_08210 IPR011527 ABC transporter type 1, transmembrane domain JO40_08215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08215 IPR017871 ABC transporter, conserved site JO40_08215 IPR003439 ABC transporter-like JO40_08215 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_08215 IPR011527 ABC transporter type 1, transmembrane domain JO40_08215 IPR003593 AAA+ ATPase domain JO40_08215 IPR039421 Type I protein exporter JO40_08235 IPR001160 Peptidase M20C, Xaa-His dipeptidase JO40_08235 IPR011650 Peptidase M20, dimerisation domain JO40_08235 IPR002933 Peptidase M20 JO40_08245 IPR006127 Periplasmic solute binding protein, ZnuA-like JO40_08245 IPR006128 Adhesion lipoprotein JO40_08245 IPR006129 Adhesin B JO40_08265 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_08265 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO40_08265 IPR036621 Anticodon-binding domain superfamily JO40_08265 IPR002316 Proline-tRNA ligase, class IIa JO40_08265 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type JO40_08265 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 JO40_08265 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain JO40_08265 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily JO40_08265 IPR033730 Prokaryote proline-tRNA ligase core domain JO40_08265 IPR004154 Anticodon-binding JO40_08270 IPR036286 LexA/Signal peptidase-like superfamily JO40_08270 IPR019757 Peptidase S26A, signal peptidase I, lysine active site JO40_08270 IPR000223 Peptidase S26A, signal peptidase I JO40_08270 IPR019533 Peptidase S26 JO40_08270 IPR019758 Peptidase S26A, signal peptidase I, conserved site JO40_08280 IPR028082 Periplasmic binding protein-like I JO40_08280 IPR040740 MglB-2, periplasmic binding protein domain JO40_08280 IPR025997 Periplasmic binding protein JO40_08305 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily JO40_08305 IPR042119 QueA, domain 2 JO40_08305 IPR042118 QueA, domain 1 JO40_08305 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA JO40_08310 IPR020683 Ankyrin repeat-containing domain JO40_08310 IPR002110 Ankyrin repeat JO40_08310 IPR036770 Ankyrin repeat-containing domain superfamily JO40_08315 IPR036071 AMMECR1 domain superfamily JO40_08315 IPR002733 AMMECR1 domain JO40_08315 IPR023473 AMMECR1 JO40_08315 IPR027485 AMMECR1, N-terminal JO40_08315 IPR027623 AmmeMemoRadiSam system protein A JO40_08315 IPR023472 Uncharacterised protein family MJ0810 JO40_08315 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B JO40_08320 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_08320 IPR018631 AAA-ATPase-like domain JO40_08330 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08330 IPR031322 Shikimate kinase/gluconokinase JO40_08330 IPR000623 Shikimate kinase/Threonine synthase-like 1 JO40_08330 IPR023000 Shikimate kinase, conserved site JO40_08335 IPR012302 Malic enzyme, NAD-binding JO40_08335 IPR001891 Malic oxidoreductase JO40_08335 IPR015884 Malic enzyme, conserved site JO40_08335 IPR036291 NAD(P)-binding domain superfamily JO40_08335 IPR012301 Malic enzyme, N-terminal domain JO40_08335 IPR037062 Malic enzyme, N-terminal domain superfamily JO40_08355 IPR035906 MetI-like superfamily JO40_08355 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_08360 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO40_08360 IPR035906 MetI-like superfamily JO40_08360 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO40_08365 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_08365 IPR017871 ABC transporter, conserved site JO40_08365 IPR003439 ABC transporter-like JO40_08365 IPR003593 AAA+ ATPase domain JO40_08365 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08370 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_08370 IPR017871 ABC transporter, conserved site JO40_08370 IPR003439 ABC transporter-like JO40_08370 IPR003593 AAA+ ATPase domain JO40_08370 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08375 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_08375 IPR029039 Flavoprotein-like superfamily JO40_08375 IPR008254 Flavodoxin/nitric oxide synthase JO40_08375 IPR002563 Flavin reductase like domain JO40_08375 IPR001279 Metallo-beta-lactamase JO40_08375 IPR012349 FMN-binding split barrel JO40_08385 IPR002178 PTS EIIA type-2 domain JO40_08385 IPR016152 Phosphotransferase/anion transporter JO40_08385 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN JO40_08390 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm JO40_08390 IPR023165 rRNA adenine dimethylase-like JO40_08390 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site JO40_08390 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_08390 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal JO40_08390 IPR011530 Ribosomal RNA adenine dimethylase JO40_08400 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_08400 IPR006225 Pseudouridine synthase, RluC/RluD JO40_08400 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_08400 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO40_08405 IPR036986 RNA-binding S4 domain superfamily JO40_08405 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO40_08405 IPR006225 Pseudouridine synthase, RluC/RluD JO40_08405 IPR002942 RNA-binding S4 domain JO40_08405 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_08405 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_08420 IPR013527 YicC-like, N-terminal JO40_08420 IPR013551 Domain of unknown function DUF1732 JO40_08420 IPR005229 Conserved hypothetical protein CHP00255 JO40_08425 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08425 IPR011994 Cytidylate kinase domain JO40_08425 IPR011892 Cytidylate kinase, putative JO40_08440 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO40_08440 IPR036621 Anticodon-binding domain superfamily JO40_08440 IPR002320 Threonine-tRNA ligase, class IIa JO40_08440 IPR004154 Anticodon-binding JO40_08440 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO40_08440 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO40_08440 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_08440 IPR033728 Threonine-tRNA ligase catalytic core domain JO40_08470 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase JO40_08495 IPR003805 Adenosylcobinamide-GDP ribazoletransferase JO40_08515 IPR007848 Methyltransferase small domain JO40_08515 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_08515 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit JO40_08520 IPR014777 Tetrapyrrole methylase, subdomain 1 JO40_08520 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase JO40_08520 IPR035996 Tetrapyrrole methylase superfamily JO40_08520 IPR000878 Tetrapyrrole methylase JO40_08525 IPR036249 Thioredoxin-like superfamily JO40_08525 IPR013740 Redoxin JO40_08525 IPR017937 Thioredoxin, conserved site JO40_08525 IPR013766 Thioredoxin domain JO40_08555 IPR001851 ABC transporter, permease JO40_08560 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal JO40_08560 IPR001851 ABC transporter, permease JO40_08565 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal JO40_08565 IPR017871 ABC transporter, conserved site JO40_08565 IPR003439 ABC transporter-like JO40_08565 IPR003593 AAA+ ATPase domain JO40_08565 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08570 IPR003439 ABC transporter-like JO40_08570 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein JO40_08570 IPR003593 AAA+ ATPase domain JO40_08570 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08570 IPR017871 ABC transporter, conserved site JO40_08585 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 JO40_08585 IPR004006 DhaK domain JO40_08590 IPR004006 DhaK domain JO40_08590 IPR004007 DhaL domain JO40_08590 IPR036117 DhaL domain superfamily JO40_08600 IPR000522 ABC transporter, permease protein, BtuC-like JO40_08600 IPR037294 ABC transporter, BtuC-like JO40_08625 IPR014780 tRNA pseudouridine synthase II, TruB JO40_08625 IPR002501 Pseudouridine synthase II, N-terminal JO40_08625 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_08630 IPR000238 Ribosome-binding factor A JO40_08630 IPR023799 Ribosome-binding factor A domain superfamily JO40_08630 IPR015946 K homology domain-like, alpha/beta JO40_08630 IPR020053 Ribosome-binding factor A, conserved site JO40_08635 IPR006847 Translation initiation factor IF-2, N-terminal JO40_08635 IPR009000 Translation protein, beta-barrel domain superfamily JO40_08635 IPR036925 Translation initiation factor IF-2, domain 3 superfamily JO40_08635 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08635 IPR005225 Small GTP-binding protein domain JO40_08635 IPR000795 Transcription factor, GTP-binding domain JO40_08635 IPR000178 Translation initiation factor aIF-2, bacterial-like JO40_08635 IPR015760 Translation initiation factor IF- 2 JO40_08635 IPR023115 Translation initiation factor IF- 2, domain 3 JO40_08640 IPR003029 S1 domain JO40_08640 IPR010213 Transcription termination factor NusA JO40_08640 IPR013735 Transcription factor NusA, N-terminal JO40_08640 IPR022967 RNA-binding domain, S1 JO40_08640 IPR004087 K Homology domain JO40_08640 IPR015946 K homology domain-like, alpha/beta JO40_08640 IPR025249 KH domain, NusA-like JO40_08640 IPR009019 K homology domain superfamily, prokaryotic type JO40_08640 IPR012340 Nucleic acid-binding, OB-fold JO40_08640 IPR030842 Transcription termination/antitermination protein NusA, bacterial JO40_08640 IPR036555 NusA, N-terminal domain superfamily JO40_08645 IPR028998 Ribosome maturation factor RimP, C-terminal JO40_08645 IPR003728 Ribosome maturation factor RimP JO40_08645 IPR035956 RimP, N-terminal domain superfamily JO40_08645 IPR028989 Ribosome maturation factor RimP, N-terminal JO40_08645 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily JO40_08650 IPR002433 Ornithine decarboxylase JO40_08650 IPR000183 Ornithine/DAP/Arg decarboxylase JO40_08650 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site JO40_08650 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal JO40_08650 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site JO40_08650 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal JO40_08650 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal JO40_08650 IPR029066 PLP-binding barrel JO40_08665 IPR007862 Adenylate kinase, active site lid domain JO40_08665 IPR006259 Adenylate kinase subfamily JO40_08665 IPR000850 Adenylate kinase/UMP-CMP kinase JO40_08665 IPR033690 Adenylate kinase, conserved site JO40_08665 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_08670 IPR011166 Beta-eliminating lyase family JO40_08670 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase JO40_08670 IPR013441 Tyrosine phenol-lyase JO40_08670 IPR018176 Tryptophanase, conserved site JO40_08670 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_08670 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_08670 IPR015424 Pyridoxal phosphate-dependent transferase JO40_08690 IPR036513 STAS domain superfamily JO40_08690 IPR002645 STAS domain JO40_08690 IPR003658 Anti-sigma factor antagonist JO40_08730 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_08730 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type JO40_08735 IPR035904 Chorismate synthase AroC superfamily JO40_08735 IPR000453 Chorismate synthase JO40_08755 IPR018370 Chaperonin Cpn60, conserved site JO40_08755 IPR001844 Chaperonin Cpn60 JO40_08755 IPR002423 Chaperonin Cpn60/TCP-1 family JO40_08755 IPR027409 GroEL-like apical domain superfamily JO40_08755 IPR027410 TCP-1-like chaperonin intermediate domain superfamily JO40_08755 IPR027413 GroEL-like equatorial domain superfamily JO40_08770 IPR019614 S-adenosylmethionine-dependent methyltransferase JO40_08770 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_08775 IPR022876 Redox-sensing transcriptional repressor Rex JO40_08775 IPR009718 Rex DNA-binding, C-terminal domain JO40_08775 IPR036291 NAD(P)-binding domain superfamily JO40_08775 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_08775 IPR036390 Winged helix DNA-binding domain superfamily JO40_08775 IPR003781 CoA-binding JO40_08780 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO40_08780 IPR005474 Transketolase, N-terminal JO40_08780 IPR033248 Transketolase, C-terminal domain JO40_08780 IPR020826 Transketolase binding site JO40_08780 IPR005475 Transketolase-like, pyrimidine-binding domain JO40_08780 IPR005477 Deoxyxylulose-5-phosphate synthase JO40_08780 IPR029061 Thiamin diphosphate-binding fold JO40_08785 IPR003390 DNA integrity scanning protein, DisA, N-terminal JO40_08785 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily JO40_08785 IPR034701 Diadenylate cyclase CdaA JO40_08785 IPR014046 Diadenylate cyclase JO40_08795 IPR004568 Phosphopantetheine-protein transferase domain JO40_08795 IPR002582 Holo-[acyl carrier protein] synthase JO40_08795 IPR037143 4'-phosphopantetheinyl transferase domain superfamily JO40_08795 IPR008278 4'-phosphopantetheinyl transferase domain JO40_08800 IPR021144 Uncharacterised protein family UPF0597 JO40_08800 IPR005130 Serine dehydratase-like, alpha subunit JO40_08805 IPR001460 Penicillin-binding protein, transpeptidase JO40_08805 IPR036950 Penicillin binding protein transglycosylase domain JO40_08805 IPR009647 Penicillin-binding, C-terminal JO40_08805 IPR011815 Penicillin-binding protein 1C JO40_08805 IPR023346 Lysozyme-like domain superfamily JO40_08805 IPR001264 Glycosyl transferase, family 51 JO40_08805 IPR012338 Beta-lactamase/transpeptidase-like JO40_08810 IPR001288 Translation initiation factor 3 JO40_08810 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily JO40_08810 IPR019814 Translation initiation factor 3, N-terminal JO40_08810 IPR019815 Translation initiation factor 3, C-terminal JO40_08810 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily JO40_08810 IPR019813 Translation initiation factor 3, conserved site JO40_08815 IPR018265 Ribosomal protein L35, conserved site JO40_08815 IPR021137 Ribosomal protein L35 JO40_08815 IPR001706 Ribosomal protein L35, non-mitochondrial JO40_08815 IPR037229 Ribosomal protein L35 superfamily JO40_08820 IPR035566 Ribosomal protein L20, C-terminal JO40_08820 IPR005813 Ribosomal protein L20 JO40_08830 IPR036192 Cell division protein ZapA-like superfamily JO40_08830 IPR007838 Cell division protein ZapA-like JO40_08835 IPR003791 Protein of unknown function UPF0178 JO40_08845 IPR008258 Transglycosylase SLT domain 1 JO40_08845 IPR018392 LysM domain JO40_08845 IPR036779 LysM domain superfamily JO40_08845 IPR023346 Lysozyme-like domain superfamily JO40_08845 IPR000189 Prokaryotic transglycosylase, active site JO40_08870 IPR035097 Peptidase M29, N-terminal JO40_08870 IPR000787 Peptidase M29 JO40_08925 IPR035090 Phosphorylase pyridoxal-phosphate attachment site JO40_08925 IPR000811 Glycosyl transferase, family 35 JO40_08925 IPR011833 Glycogen/starch/alpha-glucan phosphorylase JO40_08935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_08935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_08935 IPR027619 Putative C-S lyase JO40_08935 IPR004839 Aminotransferase, class I/classII JO40_08935 IPR015424 Pyridoxal phosphate-dependent transferase JO40_08960 IPR005854 Amidophosphoribosyltransferase JO40_08960 IPR029055 Nucleophile aminohydrolases, N-terminal JO40_08960 IPR017932 Glutamine amidotransferase type 2 domain JO40_08960 IPR035584 Amidophosphoribosyltransferase, N-terminal JO40_08960 IPR029057 Phosphoribosyltransferase-like JO40_08960 IPR000836 Phosphoribosyltransferase domain JO40_08970 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_08970 IPR002941 DNA methylase N-4/N-6 JO40_08970 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site JO40_08970 IPR001091 Restriction/modification DNA-methylase JO40_08990 IPR000394 RNA polymerase sigma factor 54 JO40_08990 IPR007046 RNA polymerase sigma factor 54, core-binding domain JO40_08990 IPR007634 RNA polymerase sigma factor 54, DNA-binding JO40_08990 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily JO40_08995 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_08995 IPR001279 Metallo-beta-lactamase JO40_09010 IPR018093 BCCT transporter, conserved site JO40_09010 IPR000060 BCCT transporter family JO40_09015 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09015 IPR025877 MobA-like NTP transferase JO40_09015 IPR017189 CTP:phosphocholine cytidylyltransferase JO40_09020 IPR001463 Sodium:alanine symporter JO40_09035 IPR003607 HD/PDEase domain JO40_09035 IPR037522 HD-GYP domain JO40_09040 IPR036063 Smr domain superfamily JO40_09040 IPR000432 DNA mismatch repair protein MutS, C-terminal JO40_09040 IPR002625 Smr domain JO40_09040 IPR005747 Endonuclease MutS2 JO40_09040 IPR036187 DNA mismatch repair protein MutS, core domain superfamily JO40_09040 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09040 IPR007696 DNA mismatch repair protein MutS, core JO40_09070 IPR002881 Domain of unknown function DUF58 JO40_09070 IPR036465 von Willebrand factor A-like domain superfamily JO40_09085 IPR000644 CBS domain JO40_09085 IPR036318 FAD-binding, type PCMH-like superfamily JO40_09085 IPR016169 FAD-binding, type PCMH, subdomain 2 JO40_09085 IPR005170 Transporter-associated domain JO40_09090 IPR020549 Endoribonuclease YbeY, conserved site JO40_09090 IPR002036 Endoribonuclease YbeY JO40_09090 IPR023091 Metalloprotease catalytic domain superfamily, predicted JO40_09095 IPR003607 HD/PDEase domain JO40_09095 IPR006674 HD domain JO40_09095 IPR006675 HDIG domain JO40_09095 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain JO40_09095 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain JO40_09100 IPR003714 PhoH-like protein JO40_09100 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09115 IPR000652 Triosephosphate isomerase JO40_09115 IPR020861 Triosephosphate isomerase, active site JO40_09115 IPR013785 Aldolase-type TIM barrel JO40_09115 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic JO40_09115 IPR035990 Triosephosphate isomerase superfamily JO40_09120 IPR006009 N-acetylglucosaminyltransferase, MurG JO40_09120 IPR007235 Glycosyl transferase, family 28, C-terminal JO40_09120 IPR004276 Glycosyltransferase family 28, N-terminal domain JO40_09140 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_09140 IPR001279 Metallo-beta-lactamase JO40_09155 IPR024083 Fumarase/histidase, N-terminal JO40_09155 IPR004708 Aspartate ammonia-lyase JO40_09155 IPR018951 Fumarase C, C-terminal JO40_09155 IPR000362 Fumarate lyase family JO40_09155 IPR008948 L-Aspartase-like JO40_09155 IPR020557 Fumarate lyase, conserved site JO40_09155 IPR022761 Fumarate lyase, N-terminal JO40_09160 IPR006690 Outer membrane protein, OmpA-like, conserved site JO40_09160 IPR006665 OmpA-like domain JO40_09160 IPR006664 Outer membrane protein, bacterial JO40_09160 IPR039567 Glycine zipper domain JO40_09160 IPR036737 OmpA-like domain superfamily JO40_09170 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type JO40_09170 IPR010614 DEAD2 JO40_09170 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_09170 IPR006555 ATP-dependent helicase, C-terminal JO40_09170 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09170 IPR001650 Helicase, C-terminal JO40_09200 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO40_09200 IPR003660 HAMP domain JO40_09200 IPR029787 Nucleotide cyclase JO40_09205 IPR006860 FecR protein JO40_09205 IPR013783 Immunoglobulin-like fold JO40_09245 IPR003825 Colicin V production, CvpA JO40_09250 IPR004622 DNA polymerase III, delta prime subunit JO40_09250 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09250 IPR015199 DNA polymerase III, delta subunit, C-terminal JO40_09260 IPR011006 CheY-like superfamily JO40_09260 IPR009057 Homeobox-like domain superfamily JO40_09260 IPR002197 DNA binding HTH domain, Fis-type JO40_09260 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09260 IPR001789 Signal transduction response regulator, receiver domain JO40_09260 IPR002078 RNA polymerase sigma factor 54 interaction domain JO40_09260 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO40_09260 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO40_09260 IPR025944 Sigma-54 interaction domain, conserved site JO40_09260 IPR003593 AAA+ ATPase domain JO40_09265 IPR015507 Ribosomal RNA large subunit methyltransferase E JO40_09265 IPR002877 Ribosomal RNA methyltransferase FtsJ domain JO40_09265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_09275 IPR041489 PDZ domain 6 JO40_09275 IPR001478 PDZ domain JO40_09275 IPR036034 PDZ superfamily JO40_09275 IPR009003 Peptidase S1, PA clan JO40_09275 IPR011782 Peptidase S1C, Do JO40_09275 IPR001940 Peptidase S1C JO40_09280 IPR006153 Cation/H+ exchanger JO40_09280 IPR038770 Sodium/solute symporter superfamily JO40_09280 IPR004771 K+/H+ exchanger JO40_09285 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein JO40_09285 IPR003841 Sodium-dependent phosphate transport protein JO40_09330 IPR000182 GNAT domain JO40_09330 IPR016181 Acyl-CoA N-acyltransferase JO40_09340 IPR013785 Aldolase-type TIM barrel JO40_09340 IPR006638 Elp3/MiaB/NifB JO40_09340 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site JO40_09340 IPR007197 Radical SAM JO40_09340 IPR023885 4Fe4S-binding SPASM domain JO40_09340 IPR030915 Sporulation killing factor system, radical SAM maturase SkfB JO40_09350 IPR002577 Helix-turn-helix, HxlR type JO40_09350 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_09350 IPR036390 Winged helix DNA-binding domain superfamily JO40_09355 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_09355 IPR000813 7Fe ferredoxin JO40_09355 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_09365 IPR001279 Metallo-beta-lactamase JO40_09365 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_09365 IPR013471 Ribonuclease Z/BN JO40_09370 IPR013196 Helix-turn-helix, type 11 JO40_09370 IPR001034 DeoR-type HTH domain JO40_09370 IPR026881 WYL domain JO40_09370 IPR036390 Winged helix DNA-binding domain superfamily JO40_09370 IPR028349 Protein PafC JO40_09370 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_09385 IPR003593 AAA+ ATPase domain JO40_09385 IPR017871 ABC transporter, conserved site JO40_09385 IPR003439 ABC transporter-like JO40_09385 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09395 IPR018062 HTH domain AraC-type, conserved site JO40_09395 IPR003313 AraC-type arabinose-binding/dimerisation domain JO40_09395 IPR020449 Transcription regulator HTH, AraC- type JO40_09395 IPR037923 Transcription regulator HTH-like JO40_09395 IPR009057 Homeobox-like domain superfamily JO40_09395 IPR018060 DNA binding HTH domain, AraC-type JO40_09400 IPR003439 ABC transporter-like JO40_09400 IPR039421 Type I protein exporter JO40_09400 IPR003593 AAA+ ATPase domain JO40_09400 IPR011527 ABC transporter type 1, transmembrane domain JO40_09400 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_09400 IPR017871 ABC transporter, conserved site JO40_09400 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09400 IPR011917 ABC transporter, lipid A export, MsbA JO40_09425 IPR017871 ABC transporter, conserved site JO40_09425 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09425 IPR003593 AAA+ ATPase domain JO40_09425 IPR003439 ABC transporter-like JO40_09475 IPR001650 Helicase, C-terminal JO40_09475 IPR001943 UVR domain JO40_09475 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_09475 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09475 IPR036876 UVR domain superfamily JO40_09475 IPR004807 UvrABC system, subunit B JO40_09475 IPR041471 UvrB, interaction domain JO40_09475 IPR006935 Helicase/UvrB, N-terminal JO40_09475 IPR024759 UvrB, YAD/RRR-motif-containing domain JO40_09480 IPR017953 Carbohydrate kinase, predicted, conserved site JO40_09480 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase JO40_09480 IPR036652 YjeF N-terminal domain superfamily JO40_09480 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr JO40_09480 IPR029056 Ribokinase-like JO40_09480 IPR004443 YjeF N-terminal domain JO40_09485 IPR001900 Ribonuclease II/R JO40_09485 IPR012340 Nucleic acid-binding, OB-fold JO40_09510 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily JO40_09510 IPR009614 Toxin YoeB JO40_09515 IPR004821 Cytidyltransferase-like domain JO40_09515 IPR001980 Phosphopantetheine adenylyltransferase JO40_09515 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_09530 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09530 IPR011917 ABC transporter, lipid A export, MsbA JO40_09530 IPR017871 ABC transporter, conserved site JO40_09530 IPR003439 ABC transporter-like JO40_09530 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_09530 IPR011527 ABC transporter type 1, transmembrane domain JO40_09530 IPR003593 AAA+ ATPase domain JO40_09530 IPR039421 Type I protein exporter JO40_09550 IPR002842 V-type ATPase subunit E JO40_09550 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily JO40_09555 IPR018334 ArsR-type transcription regulator, HTH motif JO40_09555 IPR001845 HTH ArsR-type DNA-binding domain JO40_09555 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_09555 IPR036390 Winged helix DNA-binding domain superfamily JO40_09555 IPR011991 ArsR-like helix-turn-helix domain JO40_09560 IPR017969 Heavy-metal-associated, conserved site JO40_09560 IPR006121 Heavy metal-associated domain, HMA JO40_09560 IPR036412 HAD-like superfamily JO40_09560 IPR008250 P-type ATPase, A domain superfamily JO40_09560 IPR023298 P-type ATPase, transmembrane domain superfamily JO40_09560 IPR018303 P-type ATPase, phosphorylation site JO40_09560 IPR023299 P-type ATPase, cytoplasmic domain N JO40_09560 IPR001757 P-type ATPase JO40_09560 IPR027256 P-type ATPase, subfamily IB JO40_09560 IPR036163 Heavy metal-associated domain superfamily JO40_09560 IPR023214 HAD superfamily JO40_09565 IPR003660 HAMP domain JO40_09565 IPR033479 Double Cache domain 1 JO40_09565 IPR029151 Periplasmic sensor-like domain superfamily JO40_09565 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_09570 IPR006225 Pseudouridine synthase, RluC/RluD JO40_09570 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO40_09570 IPR006145 Pseudouridine synthase, RsuA/RluA JO40_09570 IPR002942 RNA-binding S4 domain JO40_09570 IPR036986 RNA-binding S4 domain superfamily JO40_09570 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO40_09585 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain JO40_09585 IPR019554 Soluble ligand binding domain JO40_09585 IPR026902 RnfC Barrel sandwich hybrid domain JO40_09585 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily JO40_09585 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC JO40_09585 IPR009051 Alpha-helical ferredoxin JO40_09585 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_09585 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_09590 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D JO40_09590 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD JO40_09620 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09620 IPR025501 ATP binding protein MinD JO40_09620 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 JO40_09635 IPR036526 Carbon-nitrogen hydrolase superfamily JO40_09635 IPR003010 Carbon-nitrogen hydrolase JO40_09635 IPR022310 NAD/GMP synthase JO40_09635 IPR003694 NAD(+) synthetase JO40_09635 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_09635 IPR041856 Glutamine-dependent NAD+ synthetase, C-terminal JO40_09635 IPR014445 Glutamine-dependent NAD(+) synthetase JO40_09650 IPR003439 ABC transporter-like JO40_09650 IPR017871 ABC transporter, conserved site JO40_09650 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09650 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily JO40_09650 IPR003593 AAA+ ATPase domain JO40_09650 IPR032524 ABC transporter Uup, C-terminal JO40_09650 IPR032781 ABC-transporter extension domain JO40_09655 IPR003646 SH3-like domain, bacterial-type JO40_09660 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ JO40_09660 IPR029062 Class I glutamine amidotransferase-like JO40_09660 IPR017926 Glutamine amidotransferase JO40_09670 IPR003607 HD/PDEase domain JO40_09670 IPR006674 HD domain JO40_09715 IPR040442 Pyruvate kinase-like domain superfamily JO40_09715 IPR012649 Phosphonopyruvate hydrolase JO40_09715 IPR039556 ICL/PEPM domain JO40_09715 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_09720 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain JO40_09720 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding JO40_09720 IPR029061 Thiamin diphosphate-binding fold JO40_09720 IPR017684 Phosphonopyruvate decarboxylase JO40_09725 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_09725 IPR015424 Pyridoxal phosphate-dependent transferase JO40_09725 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase JO40_09725 IPR000192 Aminotransferase class V domain JO40_09725 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_09725 IPR012703 2-aminoethylphosphonate--pyruvate transaminase JO40_09745 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_09745 IPR003593 AAA+ ATPase domain JO40_09745 IPR003439 ABC transporter-like JO40_09745 IPR017871 ABC transporter, conserved site JO40_09765 IPR025714 Methyltransferase domain JO40_09765 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_09780 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain JO40_09780 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like JO40_09785 IPR001173 Glycosyltransferase 2-like JO40_09785 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09795 IPR005835 Nucleotidyl transferase domain JO40_09795 IPR013446 Glucose-1-phosphate cytidylyltransferase JO40_09795 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09800 IPR036291 NAD(P)-binding domain superfamily JO40_09800 IPR016040 NAD(P)-binding domain JO40_09800 IPR013445 CDP-glucose 4,6-dehydratase JO40_09815 IPR036291 NAD(P)-binding domain superfamily JO40_09815 IPR001509 NAD-dependent epimerase/dehydratase JO40_09830 IPR001173 Glycosyltransferase 2-like JO40_09830 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09835 IPR001173 Glycosyltransferase 2-like JO40_09835 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09845 IPR036291 NAD(P)-binding domain superfamily JO40_09845 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal JO40_09845 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation JO40_09845 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily JO40_09845 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type JO40_09845 IPR017476 UDP-glucose/GDP-mannose dehydrogenase JO40_09845 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO40_09845 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal JO40_09850 IPR001173 Glycosyltransferase 2-like JO40_09850 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09860 IPR014710 RmlC-like jelly roll fold JO40_09860 IPR008894 WxcM-like, C-terminal JO40_09860 IPR011051 RmlC-like cupin domain superfamily JO40_09890 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_09890 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_09890 IPR015424 Pyridoxal phosphate-dependent transferase JO40_09890 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase JO40_09895 IPR002654 Glycosyl transferase, family 25 JO40_09920 IPR019998 Membrane insertase YidC JO40_09920 IPR028055 Membrane insertase YidC/Oxa1, C-terminal JO40_09920 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 JO40_09950 IPR038210 Membrane insertase YidC, periplasmic domain JO40_09950 IPR028055 Membrane insertase YidC/Oxa1, C-terminal JO40_09950 IPR028053 Membrane insertase YidC, N-terminal JO40_09950 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 JO40_09950 IPR019998 Membrane insertase YidC JO40_09960 IPR011875 Alpha-maltose-1-phosphate synthase JO40_09960 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain JO40_09960 IPR001296 Glycosyl transferase, family 1 JO40_09965 IPR036291 NAD(P)-binding domain superfamily JO40_09965 IPR001509 NAD-dependent epimerase/dehydratase JO40_09970 IPR005835 Nucleotidyl transferase domain JO40_09970 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form JO40_09970 IPR029044 Nucleotide-diphospho-sugar transferases JO40_09975 IPR005888 dTDP-glucose 4,6-dehydratase JO40_09975 IPR016040 NAD(P)-binding domain JO40_09975 IPR036291 NAD(P)-binding domain superfamily JO40_09980 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_09980 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain JO40_09980 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit JO40_09980 IPR015807 Histidine-tRNA ligase JO40_09980 IPR036621 Anticodon-binding domain superfamily JO40_09990 IPR022712 Beta-Casp domain JO40_09990 IPR001279 Metallo-beta-lactamase JO40_09990 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO40_09990 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain JO40_10005 IPR032781 ABC-transporter extension domain JO40_10005 IPR003439 ABC transporter-like JO40_10005 IPR017871 ABC transporter, conserved site JO40_10005 IPR022374 Energy-dependent translational throttle protein EttA JO40_10005 IPR003593 AAA+ ATPase domain JO40_10005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10015 IPR001478 PDZ domain JO40_10015 IPR005151 Tail specific protease JO40_10015 IPR029045 ClpP/crotonase-like domain superfamily JO40_10015 IPR004447 C-terminal-processing peptidase S41A JO40_10015 IPR036034 PDZ superfamily JO40_10070 IPR007863 Peptidase M16, C-terminal JO40_10070 IPR013578 Peptidase M16C associated JO40_10070 IPR011765 Peptidase M16, N-terminal JO40_10070 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like JO40_10075 IPR002176 Crossover junction endodeoxyribonuclease RuvC JO40_10075 IPR036397 Ribonuclease H superfamily JO40_10075 IPR012337 Ribonuclease H-like superfamily JO40_10080 IPR010994 RuvA domain 2-like JO40_10080 IPR000085 Bacterial DNA recombination protein RuvA JO40_10080 IPR012340 Nucleic acid-binding, OB-fold JO40_10080 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 JO40_10080 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial JO40_10155 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10155 IPR017871 ABC transporter, conserved site JO40_10155 IPR015854 ABC transporter, lipoprotein release, LolD JO40_10155 IPR003439 ABC transporter-like JO40_10155 IPR003593 AAA+ ATPase domain JO40_10160 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10160 IPR017871 ABC transporter, conserved site JO40_10160 IPR003439 ABC transporter-like JO40_10160 IPR003838 ABC transporter permease protein domain JO40_10160 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO40_10160 IPR025857 MacB-like periplasmic core domain JO40_10160 IPR003593 AAA+ ATPase domain JO40_10195 IPR008201 Protein of unknown function DUF86 JO40_10275 IPR023214 HAD superfamily JO40_10275 IPR006379 HAD-superfamily hydrolase, subfamily IIB JO40_10275 IPR036412 HAD-like superfamily JO40_10275 IPR000150 Cof family JO40_10310 IPR008201 Protein of unknown function DUF86 JO40_10330 IPR003477 mRNA interferase PemK-like JO40_10330 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor JO40_10350 IPR030388 Era-type guanine nucleotide-binding (G) domain JO40_10350 IPR005662 GTP-binding protein Era JO40_10350 IPR005225 Small GTP-binding protein domain JO40_10350 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10350 IPR009019 K homology domain superfamily, prokaryotic type JO40_10350 IPR004044 K Homology domain, type 2 JO40_10350 IPR015946 K homology domain-like, alpha/beta JO40_10350 IPR006073 GTP binding domain JO40_10355 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_10355 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_10355 IPR011005 Dihydropteroate synthase-like JO40_10355 IPR007202 4Fe-4S domain JO40_10355 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria JO40_10355 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB JO40_10360 IPR009000 Translation protein, beta-barrel domain superfamily JO40_10360 IPR005225 Small GTP-binding protein domain JO40_10360 IPR006297 Elongation factor 4 JO40_10360 IPR041095 Elongation Factor G, domain II JO40_10360 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10360 IPR000795 Transcription factor, GTP-binding domain JO40_10360 IPR035654 Elongation factor 4, domain IV JO40_10360 IPR035647 EF-G domain III/V-like JO40_10360 IPR000640 Elongation factor EFG, domain V-like JO40_10360 IPR004161 Translation elongation factor EFTu-like, domain 2 JO40_10360 IPR038363 LepA, C-terminal domain superfamily JO40_10360 IPR013842 GTP-binding protein LepA, C-terminal JO40_10400 IPR004685 Branched-chain amino acid transport system II carrier protein JO40_10415 IPR023404 Radical SAM, alpha/beta horseshoe JO40_10415 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO40_10415 IPR005839 Methylthiotransferase JO40_10415 IPR006638 Elp3/MiaB/NifB JO40_10415 IPR013848 Methylthiotransferase, N-terminal JO40_10415 IPR007197 Radical SAM JO40_10415 IPR020612 Methylthiotransferase, conserved site JO40_10415 IPR006467 MiaB-like tRNA modifying enzyme JO40_10445 IPR018258 Ribosomal protein L21, conserved site JO40_10445 IPR028909 Ribosomal protein L21-like JO40_10445 IPR036164 L21-like superfamily JO40_10445 IPR001787 Ribosomal protein L21 JO40_10455 IPR018261 Ribosomal protein L27, conserved site JO40_10455 IPR001684 Ribosomal protein L27 JO40_10460 IPR035101 GTP-binding protein, Obg-type JO40_10460 IPR014100 GTP-binding protein Obg/CgtA JO40_10460 IPR031167 OBG-type guanine nucleotide-binding (G) domain JO40_10460 IPR006074 GTP1/OBG, conserved site JO40_10460 IPR006169 GTP1/OBG domain JO40_10460 IPR036726 GTP1/OBG domain superfamily JO40_10460 IPR006073 GTP binding domain JO40_10460 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10465 IPR004821 Cytidyltransferase-like domain JO40_10465 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase JO40_10465 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_10475 IPR004394 Protein Iojap/ribosomal silencing factor RsfS JO40_10480 IPR003370 Chromate transporter JO40_10480 IPR014047 Chromate transporter, long chain JO40_10485 IPR003370 Chromate transporter JO40_10485 IPR014047 Chromate transporter, long chain JO40_10490 IPR012724 Chaperone DnaJ JO40_10490 IPR036869 Chaperone J-domain superfamily JO40_10490 IPR002939 Chaperone DnaJ, C-terminal JO40_10490 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO40_10490 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO40_10490 IPR018253 DnaJ domain, conserved site JO40_10490 IPR008971 HSP40/DnaJ peptide-binding JO40_10490 IPR001623 DnaJ domain JO40_10500 IPR004808 AP endonuclease 1 JO40_10500 IPR020848 AP endonuclease 1, conserved site JO40_10500 IPR036691 Endonuclease/exonuclease/phosphatase superfamily JO40_10500 IPR005135 Endonuclease/exonuclease/phosphatase JO40_10500 IPR020847 AP endonuclease 1, binding site JO40_10510 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_10510 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_10520 IPR011055 Duplicated hybrid motif JO40_10520 IPR007340 Opacity-associated protein A JO40_10520 IPR016047 Peptidase M23 JO40_10530 IPR001460 Penicillin-binding protein, transpeptidase JO40_10530 IPR031376 Penicillin-binding protein, OB-like domain JO40_10530 IPR036950 Penicillin binding protein transglycosylase domain JO40_10530 IPR023346 Lysozyme-like domain superfamily JO40_10530 IPR001264 Glycosyl transferase, family 51 JO40_10530 IPR012338 Beta-lactamase/transpeptidase-like JO40_10540 IPR000873 AMP-dependent synthetase/ligase JO40_10540 IPR042099 AMP-dependent synthetase-like superfamily JO40_10540 IPR020845 AMP-binding, conserved site JO40_10585 IPR010206 Poly(A) polymerase I JO40_10585 IPR002646 Poly A polymerase, head domain JO40_10585 IPR025866 Polymerase A arginine-rich C-terminal domain JO40_10585 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain JO40_10615 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_10615 IPR000835 MarR-type HTH domain JO40_10615 IPR036390 Winged helix DNA-binding domain superfamily JO40_10620 IPR017926 Glutamine amidotransferase JO40_10620 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_10620 IPR022955 GMP synthase JO40_10620 IPR029062 Class I glutamine amidotransferase-like JO40_10620 IPR004739 GMP synthase, glutamine amidotransferase JO40_10620 IPR001674 GMP synthase, C-terminal JO40_10620 IPR025777 GMP synthetase ATP pyrophosphatase domain JO40_10620 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal JO40_10635 IPR036043 Phosphoglycerate kinase superfamily JO40_10635 IPR015824 Phosphoglycerate kinase, N-terminal JO40_10635 IPR001576 Phosphoglycerate kinase JO40_10640 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain JO40_10650 IPR016369 Flagellar filament outer layer protein FlaA, Spirochaetes JO40_10650 IPR006714 Flagellar filament outer layer protein FlaA JO40_10660 IPR002583 Ribosomal protein S20 JO40_10660 IPR036510 Ribosomal protein S20 superfamily JO40_10680 IPR008135 Competence-induced protein CinA JO40_10680 IPR036653 CinA-like, C-terminal JO40_10680 IPR008136 CinA, C-terminal JO40_10680 IPR041424 CinA, KH domain JO40_10680 IPR036425 MoaB/Mog-like domain superfamily JO40_10680 IPR001453 MoaB/Mog domain JO40_10710 IPR005952 Phosphoglycerate mutase 1 JO40_10710 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site JO40_10710 IPR029033 Histidine phosphatase superfamily JO40_10710 IPR013078 Histidine phosphatase superfamily, clade-1 JO40_10715 IPR009197 Microcystin LR degradation protein MlrC JO40_10715 IPR010799 Microcystin LR degradation protein MlrC, C-terminal JO40_10715 IPR015995 Microcystin LR degradation protein MlrC, N-terminal JO40_10720 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type JO40_10720 IPR011954 Benzoyl-CoA reductase, subunit A JO40_10720 IPR008275 CoA enzyme activase JO40_10740 IPR003593 AAA+ ATPase domain JO40_10740 IPR003439 ABC transporter-like JO40_10740 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10740 IPR017871 ABC transporter, conserved site JO40_10750 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_10750 IPR013026 Tetratricopeptide repeat-containing domain JO40_10750 IPR019734 Tetratricopeptide repeat JO40_10760 IPR000836 Phosphoribosyltransferase domain JO40_10760 IPR005764 Adenine phosphoribosyl transferase JO40_10760 IPR029057 Phosphoribosyltransferase-like JO40_10765 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension JO40_10765 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily JO40_10765 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site JO40_10765 IPR022878 V-type ATP synthase catalytic alpha chain JO40_10765 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10765 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO40_10765 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO40_10765 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal JO40_10770 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10770 IPR022879 V-type ATP synthase regulatory subunit B/beta JO40_10770 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO40_10770 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO40_10775 IPR002699 ATPase, V1 complex, subunit D JO40_10780 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family JO40_10790 IPR020815 Ribosomal protein S6, conserved site JO40_10790 IPR020814 Ribosomal protein S6, plastid/chloroplast JO40_10790 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 JO40_10790 IPR035980 Ribosomal protein S6 superfamily JO40_10790 IPR000529 Ribosomal protein S6 JO40_10795 IPR012340 Nucleic acid-binding, OB-fold JO40_10795 IPR000424 Primosome PriB/single-strand DNA-binding JO40_10795 IPR011344 Single-stranded DNA-binding protein JO40_10800 IPR001648 Ribosomal protein S18 JO40_10800 IPR018275 Ribosomal protein S18, conserved site JO40_10800 IPR036870 Ribosomal protein S18 superfamily JO40_10805 IPR020594 Ribosomal protein L9, bacteria/chloroplast JO40_10805 IPR036791 Ribosomal protein L9, C-terminal domain superfamily JO40_10805 IPR020070 Ribosomal protein L9, N-terminal JO40_10805 IPR020069 Ribosomal protein L9, C-terminal JO40_10805 IPR009027 Ribosomal protein L9/RNase H1, N-terminal JO40_10805 IPR036935 Ribosomal protein L9, N-terminal domain superfamily JO40_10805 IPR000244 Ribosomal protein L9 JO40_10815 IPR010603 Zinc finger, ClpX C4-type JO40_10815 IPR003593 AAA+ ATPase domain JO40_10815 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10815 IPR038366 Zinc finger, ClpX C4-type superfamily JO40_10815 IPR001270 ClpA/B family JO40_10815 IPR004487 Clp protease, ATP-binding subunit ClpX JO40_10815 IPR003959 ATPase, AAA-type, core JO40_10815 IPR019489 Clp ATPase, C-terminal JO40_10820 IPR033135 ClpP, histidine active site JO40_10820 IPR001907 ATP-dependent Clp protease proteolytic subunit JO40_10820 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA JO40_10820 IPR029045 ClpP/crotonase-like domain superfamily JO40_10825 IPR037041 Trigger factor, C-terminal domain superfamily JO40_10825 IPR008880 Trigger factor, C-terminal JO40_10825 IPR036611 Trigger factor ribosome-binding domain superfamily JO40_10825 IPR027304 Trigger factor/SurA domain superfamily JO40_10825 IPR005215 Trigger factor JO40_10825 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain JO40_10825 IPR008881 Trigger factor, ribosome-binding, bacterial JO40_10845 IPR004839 Aminotransferase, class I/classII JO40_10845 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_10845 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_10845 IPR027619 Putative C-S lyase JO40_10845 IPR015424 Pyridoxal phosphate-dependent transferase JO40_10855 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal JO40_10855 IPR037171 NagB/RpiA transferase-like JO40_10855 IPR000649 Initiation factor 2B-related JO40_10855 IPR011559 Initiation factor 2B alpha/beta/delta JO40_10855 IPR005251 Methylthioribose-1-phosphate isomerase JO40_10870 IPR036737 OmpA-like domain superfamily JO40_10870 IPR006690 Outer membrane protein, OmpA-like, conserved site JO40_10870 IPR006665 OmpA-like domain JO40_10870 IPR006664 Outer membrane protein, bacterial JO40_10875 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily JO40_10875 IPR007692 DNA helicase, DnaB type JO40_10875 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal JO40_10875 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10875 IPR007694 DNA helicase, DnaB-like, C-terminal JO40_10875 IPR007693 DNA helicase, DnaB-like, N-terminal JO40_10885 IPR002318 Alanine-tRNA ligase, class IIc JO40_10885 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO40_10885 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily JO40_10885 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain JO40_10885 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal JO40_10885 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO40_10885 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria JO40_10890 IPR027304 Trigger factor/SurA domain superfamily JO40_10890 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type JO40_10895 IPR006027 NusB/RsmB/TIM44 JO40_10895 IPR011605 NusB antitermination factor JO40_10895 IPR035926 NusB-like superfamily JO40_10910 IPR001650 Helicase, C-terminal JO40_10910 IPR011709 Domain of unknown function DUF1605 JO40_10910 IPR011545 DEAD/DEAH box helicase domain JO40_10910 IPR042035 DEAH helicase, winged-helix domain JO40_10910 IPR007502 Helicase-associated domain JO40_10910 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_10910 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10915 IPR018631 AAA-ATPase-like domain JO40_10915 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_10925 IPR033247 Transketolase family JO40_10925 IPR020826 Transketolase binding site JO40_10925 IPR005478 Transketolase, bacterial-like JO40_10925 IPR005475 Transketolase-like, pyrimidine-binding domain JO40_10925 IPR005474 Transketolase, N-terminal JO40_10925 IPR029061 Thiamin diphosphate-binding fold JO40_10925 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO40_10930 IPR005886 UDP-glucose 4-epimerase JO40_10930 IPR036291 NAD(P)-binding domain superfamily JO40_10930 IPR016040 NAD(P)-binding domain JO40_10935 IPR038094 Desulforodoxin domain superfamily JO40_10935 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily JO40_10935 IPR004462 Desulforodoxin domain JO40_10935 IPR004793 Desulfoferrodoxin JO40_10935 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain JO40_10985 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_10985 IPR004604 DNA recombination/repair protein RecN JO40_10985 IPR003395 RecF/RecN/SMC, N-terminal JO40_11005 IPR038765 Papain-like cysteine peptidase superfamily JO40_11005 IPR000064 Endopeptidase, NLPC/P60 domain JO40_11005 IPR036779 LysM domain superfamily JO40_11005 IPR018392 LysM domain JO40_11015 IPR011104 HPr kinase/phosphorylase, C-terminal JO40_11015 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal JO40_11015 IPR003755 HPr(Ser) kinase/phosphorylase JO40_11015 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily JO40_11020 IPR035895 HPr-like superfamily JO40_11020 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site JO40_11020 IPR002114 Phosphotransferase system, HPr serine phosphorylation site JO40_11020 IPR000032 Phosphocarrier protein HPr-like JO40_11030 IPR036059 Metalloprotease TldD/PmbA superfamily JO40_11030 IPR035068 Metalloprotease TldD/PmbA, N-terminal JO40_11030 IPR002510 Metalloprotease TldD/PmbA JO40_11045 IPR029052 Metallo-dependent phosphatase-like JO40_11045 IPR005235 Metallophosphoesterase, YmdB-like JO40_11055 IPR000092 Polyprenyl synthetase JO40_11055 IPR008949 Isoprenoid synthase domain superfamily JO40_11055 IPR033749 Polyprenyl synthetase, conserved site JO40_11080 IPR005358 Putative zinc- or iron-chelating domain containing protein JO40_11095 IPR003770 Endolytic murein transglycosylase JO40_11115 IPR036397 Ribonuclease H superfamily JO40_11115 IPR012337 Ribonuclease H-like superfamily JO40_11115 IPR024567 Ribonuclease HII/HIII domain JO40_11115 IPR001352 Ribonuclease HII/HIII JO40_11115 IPR022898 Ribonuclease HII JO40_11120 IPR004684 2-keto-3-deoxygluconate permease JO40_11125 IPR010737 Four-carbon acid sugar kinase, N-terminal domain JO40_11125 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily JO40_11125 IPR031475 Nucleotide-binding C-terminal domain JO40_11125 IPR042213 Nucleotide-binding, C-terminal domain superfamily JO40_11130 IPR005255 PdxA family JO40_11135 IPR013974 SAF domain JO40_11140 IPR007392 D-galactarate/Altronate dehydratase, C-terminal JO40_11145 IPR014036 DeoR C-terminal sensor domain JO40_11145 IPR001034 DeoR-type HTH domain JO40_11145 IPR036390 Winged helix DNA-binding domain superfamily JO40_11145 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_11145 IPR018356 Transcription regulator, HTH DeoR-type, conserved site JO40_11145 IPR037171 NagB/RpiA transferase-like JO40_11150 IPR011002 Flagellar motor switch protein FliG, alpha-helical JO40_11150 IPR023087 Flagellar motor switch protein FliG, C-terminal JO40_11150 IPR028263 Flagellar motor switch protein FliG, N-terminal domain JO40_11150 IPR000090 Flagellar motor switch protein FliG JO40_11150 IPR032779 Flagellar motor switch protein FliG, middle domain JO40_11175 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain JO40_11190 IPR027608 Spirochetes SPASM protein JO40_11190 IPR023885 4Fe4S-binding SPASM domain JO40_11205 IPR000577 Carbohydrate kinase, FGGY JO40_11205 IPR005999 Glycerol kinase JO40_11205 IPR018484 Carbohydrate kinase, FGGY, N-terminal JO40_11205 IPR018483 Carbohydrate kinase, FGGY, conserved site JO40_11205 IPR018485 Carbohydrate kinase, FGGY, C-terminal JO40_11210 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA JO40_11210 IPR018211 Alcohol dehydrogenase, iron-type, conserved site JO40_11215 IPR008824 RuvB-like P-loop domain JO40_11215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11215 IPR004605 DNA helicase, Holliday junction RuvB-type JO40_11215 IPR041445 RuvB, AAA lid domain JO40_11215 IPR003593 AAA+ ATPase domain JO40_11215 IPR008823 RuvB C-terminal winged helix domain JO40_11215 IPR036390 Winged helix DNA-binding domain superfamily JO40_11215 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_11225 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_11225 IPR000524 Transcription regulator HTH, GntR JO40_11225 IPR036390 Winged helix DNA-binding domain superfamily JO40_11230 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11230 IPR004027 SEC-C motif JO40_11230 IPR000185 Protein translocase subunit SecA JO40_11230 IPR020937 SecA conserved site JO40_11230 IPR036670 SecA, preprotein cross-linking domain superfamily JO40_11230 IPR011115 SecA DEAD-like, N-terminal JO40_11230 IPR014018 SecA motor DEAD JO40_11230 IPR011130 SecA, preprotein cross-linking domain JO40_11230 IPR036266 SecA, Wing/Scaffold superfamily JO40_11230 IPR011116 SecA Wing/Scaffold JO40_11235 IPR001555 Phosphoribosylglycinamide formyltransferase, active site JO40_11235 IPR004607 Phosphoribosylglycinamide formyltransferase JO40_11235 IPR036477 Formyl transferase, N-terminal domain superfamily JO40_11235 IPR002376 Formyl transferase, N-terminal JO40_11240 IPR016193 Cytidine deaminase-like JO40_11240 IPR024051 AICAR transformylase, duplicated domain superfamily JO40_11240 IPR011607 Methylglyoxal synthase-like domain JO40_11240 IPR002695 Bifunctional purine biosynthesis protein PurH-like JO40_11240 IPR036914 Methylglyoxal synthase-like domain superfamily JO40_11245 IPR004401 Nucleoid-associated protein YbaB/EbfC family JO40_11245 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily JO40_11250 IPR006171 TOPRIM domain JO40_11250 IPR034137 RecR, TOPRIM domain JO40_11250 IPR023627 Recombination protein RecR JO40_11250 IPR000093 DNA recombination protein RecR JO40_11250 IPR023628 Recombination protein RecR, C4-type zinc finger JO40_11250 IPR015967 Recombination protein RecR, conserved site JO40_11255 IPR035966 Phosphofructokinase superfamily JO40_11255 IPR000023 Phosphofructokinase domain JO40_11255 IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB JO40_11255 IPR022953 ATP-dependent 6-phosphofructokinase JO40_11265 IPR002792 TRAM domain JO40_11265 IPR006638 Elp3/MiaB/NifB JO40_11265 IPR005839 Methylthiotransferase JO40_11265 IPR020612 Methylthiotransferase, conserved site JO40_11265 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO40_11265 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB JO40_11265 IPR013848 Methylthiotransferase, N-terminal JO40_11265 IPR007197 Radical SAM JO40_11265 IPR023404 Radical SAM, alpha/beta horseshoe JO40_11300 IPR013534 Starch synthase, catalytic domain JO40_11300 IPR001296 Glycosyl transferase, family 1 JO40_11300 IPR011835 Bacterial/plant glycogen synthase JO40_11325 IPR012340 Nucleic acid-binding, OB-fold JO40_11325 IPR029351 GAD domain JO40_11325 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type JO40_11325 IPR004115 GAD-like domain superfamily JO40_11325 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb JO40_11325 IPR004524 Aspartate-tRNA ligase, type 1 JO40_11325 IPR006195 Aminoacyl-tRNA synthetase, class II JO40_11325 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) JO40_11330 IPR002305 Aminoacyl-tRNA synthetase, class Ic JO40_11330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_11330 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_11330 IPR002306 Tryptophan-tRNA ligase JO40_11330 IPR024109 Tryptophan-tRNA ligase, bacterial-type JO40_11335 IPR039315 Chemotaxis protein CheW JO40_11335 IPR036061 CheW-like domain superfamily JO40_11335 IPR002545 CheW-like domain JO40_11345 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal JO40_11345 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal JO40_11345 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily JO40_11345 IPR002504 NAD kinase JO40_11350 IPR003593 AAA+ ATPase domain JO40_11350 IPR003439 ABC transporter-like JO40_11350 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11350 IPR032781 ABC-transporter extension domain JO40_11355 IPR009016 Iron hydrogenase JO40_11355 IPR036010 2Fe-2S ferredoxin-like superfamily JO40_11355 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain JO40_11355 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_11355 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_11355 IPR013352 Iron hydrogenase, subset JO40_11355 IPR004108 Iron hydrogenase, large subunit, C-terminal JO40_11355 IPR036991 Iron hydrogenase, small subunit superfamily JO40_11355 IPR003149 Iron hydrogenase, small subunit JO40_11355 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding JO40_11360 IPR017701 Putative selenate reductase YgfK JO40_11360 IPR009051 Alpha-helical ferredoxin JO40_11360 IPR023753 FAD/NAD(P)-binding domain JO40_11360 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_11360 IPR028261 Dihydroprymidine dehydrogenase domain II JO40_11360 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_11360 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_11365 IPR036074 CbiD superfamily JO40_11365 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD JO40_11370 IPR023781 Nucleoside triphosphatase NudI JO40_11370 IPR020476 NUDIX hydrolase JO40_11370 IPR015797 NUDIX hydrolase-like domain superfamily JO40_11370 IPR020084 NUDIX hydrolase, conserved site JO40_11370 IPR000086 NUDIX hydrolase domain JO40_11405 IPR000836 Phosphoribosyltransferase domain JO40_11405 IPR029057 Phosphoribosyltransferase-like JO40_11425 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain JO40_11425 IPR036291 NAD(P)-binding domain superfamily JO40_11425 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 JO40_11425 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site JO40_11425 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO40_11435 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 JO40_11435 IPR020581 Glycine cleavage system P protein JO40_11435 IPR015424 Pyridoxal phosphate-dependent transferase JO40_11435 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_11435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_11440 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 JO40_11440 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO40_11440 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO40_11440 IPR020581 Glycine cleavage system P protein JO40_11440 IPR015424 Pyridoxal phosphate-dependent transferase JO40_11445 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site JO40_11445 IPR002930 Glycine cleavage system H-protein JO40_11445 IPR033753 Glycine cleavage system H-protein/Simiate JO40_11445 IPR017453 Glycine cleavage system H-protein, subgroup JO40_11445 IPR011053 Single hybrid motif JO40_11445 IPR000089 Biotin/lipoyl attachment JO40_11450 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 JO40_11450 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal JO40_11450 IPR006222 Aminomethyltransferase, folate-binding domain JO40_11450 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain JO40_11450 IPR028896 Aminomethyltransferase-like JO40_11450 IPR022903 Glycine cleavage system T protein, bacteria JO40_11450 IPR006223 Glycine cleavage system T protein JO40_11460 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I JO40_11460 IPR006258 Dihydrolipoamide dehydrogenase JO40_11460 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily JO40_11460 IPR023753 FAD/NAD(P)-binding domain JO40_11460 IPR036188 FAD/NAD(P)-binding domain superfamily JO40_11460 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_11460 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site JO40_11465 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_11465 IPR002941 DNA methylase N-4/N-6 JO40_11465 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class JO40_11465 IPR041405 Type III R-M EcoP15I, C-terminal JO40_11465 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_11470 IPR006935 Helicase/UvrB, N-terminal JO40_11470 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11470 IPR014883 VRR-NUC domain JO40_11480 IPR006472 Citrate lyase, alpha subunit JO40_11480 IPR037171 NagB/RpiA transferase-like JO40_11485 IPR040442 Pyruvate kinase-like domain superfamily JO40_11485 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_11485 IPR005000 HpcH/HpaI aldolase/citrate lyase domain JO40_11485 IPR006475 Citrate lyase, beta subunit, bacteria JO40_11485 IPR011206 Citrate lyase beta subunit-like JO40_11490 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein JO40_11490 IPR006495 Citrate lyase acyl carrier protein CitD JO40_11500 IPR001098 DNA-directed DNA polymerase, family A, palm domain JO40_11500 IPR013520 Exonuclease, RNase T/DNA polymerase III JO40_11500 IPR012337 Ribonuclease H-like superfamily JO40_11500 IPR029060 PIN-like domain superfamily JO40_11500 IPR008918 Helix-hairpin-helix motif, class 2 JO40_11500 IPR020045 DNA polymerase I-like, H3TH domain JO40_11500 IPR018320 DNA polymerase 1 JO40_11500 IPR002298 DNA polymerase A JO40_11500 IPR036397 Ribonuclease H superfamily JO40_11500 IPR019760 DNA-directed DNA polymerase, family A, conserved site JO40_11500 IPR036279 5'-3' exonuclease, C-terminal domain superfamily JO40_11500 IPR002421 5'-3' exonuclease, N-terminal JO40_11500 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal JO40_11500 IPR002562 3'-5' exonuclease domain JO40_11505 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11505 IPR001977 Dephospho-CoA kinase JO40_11515 IPR022893 Shikimate dehydrogenase family JO40_11515 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal JO40_11515 IPR011342 Shikimate dehydrogenase JO40_11515 IPR041121 SDH, C-terminal JO40_11515 IPR036291 NAD(P)-binding domain superfamily JO40_11515 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase JO40_11520 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup JO40_11520 IPR004788 Ribose 5-phosphate isomerase, type A JO40_11520 IPR037171 NagB/RpiA transferase-like JO40_11530 IPR005543 PASTA domain JO40_11535 IPR036477 Formyl transferase, N-terminal domain superfamily JO40_11535 IPR011034 Formyl transferase-like, C-terminal domain superfamily JO40_11535 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain JO40_11535 IPR005794 Methionyl-tRNA formyltransferase JO40_11535 IPR005793 Formyl transferase, C-terminal JO40_11535 IPR037022 Formyl transferase, C-terminal domain superfamily JO40_11535 IPR002376 Formyl transferase, N-terminal JO40_11540 IPR036821 Peptide deformylase superfamily JO40_11540 IPR023635 Peptide deformylase JO40_11550 IPR003593 AAA+ ATPase domain JO40_11550 IPR005876 Cobalt transport protein ATP-binding subunit JO40_11550 IPR017871 ABC transporter, conserved site JO40_11550 IPR003439 ABC transporter-like JO40_11550 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11555 IPR003784 BioY protein JO40_11665 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JO40_11670 IPR013166 Citrate lyase ligase, C-terminal JO40_11670 IPR016181 Acyl-CoA N-acyltransferase JO40_11670 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_11670 IPR000182 GNAT domain JO40_11670 IPR004821 Cytidyltransferase-like domain JO40_11670 IPR005216 Citrate lyase ligase JO40_11675 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain JO40_11675 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily JO40_11675 IPR011167 Iron-dependent fumarate hydratase JO40_11675 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain JO40_11675 IPR020557 Fumarate lyase, conserved site JO40_11680 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain JO40_11705 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11705 IPR017871 ABC transporter, conserved site JO40_11705 IPR003439 ABC transporter-like JO40_11705 IPR003593 AAA+ ATPase domain JO40_11710 IPR025857 MacB-like periplasmic core domain JO40_11710 IPR005085 Carbohydrate binding module family 25 JO40_11710 IPR003838 ABC transporter permease protein domain JO40_11730 IPR018470 Periplasmic metal-binding protein Tp34-type JO40_11730 IPR038482 Periplasmic metal-binding protein tp34-type superfamily JO40_11735 IPR004923 Iron permease FTR1/Fip1/EfeU JO40_11735 IPR036259 MFS transporter superfamily JO40_11735 IPR005217 Iron permease FTR1-like JO40_11745 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_11745 IPR003593 AAA+ ATPase domain JO40_11745 IPR011527 ABC transporter type 1, transmembrane domain JO40_11745 IPR003439 ABC transporter-like JO40_11745 IPR017871 ABC transporter, conserved site JO40_11745 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11745 IPR039421 Type I protein exporter JO40_11745 IPR011917 ABC transporter, lipid A export, MsbA JO40_11750 IPR003439 ABC transporter-like JO40_11750 IPR011924 Lipoprotein releasing system, ATP-binding protein JO40_11750 IPR015854 ABC transporter, lipoprotein release, LolD JO40_11750 IPR017871 ABC transporter, conserved site JO40_11750 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11750 IPR003593 AAA+ ATPase domain JO40_11760 IPR002912 ACT domain JO40_11760 IPR029009 Allosteric substrate binding domain superfamily JO40_11760 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit JO40_11760 IPR005131 Serine dehydratase beta chain JO40_11765 IPR005130 Serine dehydratase-like, alpha subunit JO40_11765 IPR004642 Serine dehydratase, alpha subunit JO40_11775 IPR042105 Ribosomal protein L31 superfamily JO40_11775 IPR027491 Ribosomal protein L31 type A JO40_11775 IPR002150 Ribosomal protein L31 JO40_11775 IPR034704 L28p-like JO40_11780 IPR041703 Transcription termination factor Rho, ATP binding domain JO40_11780 IPR003593 AAA+ ATPase domain JO40_11780 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11780 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO40_11780 IPR011112 Rho termination factor, N-terminal JO40_11780 IPR012340 Nucleic acid-binding, OB-fold JO40_11780 IPR004665 Transcription termination factor Rho JO40_11780 IPR011129 Cold shock domain JO40_11780 IPR011113 Rho termination factor, RNA-binding domain JO40_11800 IPR018274 PEP-utilising enzyme, active site JO40_11800 IPR008279 PEP-utilising enzyme, mobile domain JO40_11800 IPR013815 ATP-grasp fold, subdomain 1 JO40_11800 IPR040442 Pyruvate kinase-like domain superfamily JO40_11800 IPR023151 PEP-utilising enzyme, conserved site JO40_11800 IPR036637 Phosphohistidine domain superfamily JO40_11800 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding JO40_11800 IPR010121 Pyruvate, phosphate dikinase JO40_11800 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO40_11800 IPR000121 PEP-utilising enzyme, C-terminal JO40_11810 IPR022761 Fumarate lyase, N-terminal JO40_11810 IPR019468 Adenylosuccinate lyase C-terminal JO40_11810 IPR024083 Fumarase/histidase, N-terminal JO40_11810 IPR020557 Fumarate lyase, conserved site JO40_11810 IPR004769 Adenylosuccinate lyase JO40_11810 IPR000362 Fumarate lyase family JO40_11810 IPR008948 L-Aspartase-like JO40_11830 IPR011890 Structural maintenance of chromosomes protein, prokaryotic JO40_11830 IPR036277 SMCs flexible hinge superfamily JO40_11830 IPR003395 RecF/RecN/SMC, N-terminal JO40_11830 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11830 IPR024704 Structural maintenance of chromosomes protein JO40_11830 IPR010935 SMCs flexible hinge JO40_11845 IPR001789 Signal transduction response regulator, receiver domain JO40_11845 IPR011006 CheY-like superfamily JO40_11855 IPR002545 CheW-like domain JO40_11855 IPR036061 CheW-like domain superfamily JO40_11855 IPR039315 Chemotaxis protein CheW JO40_11860 IPR035891 CheY-binding domain of CheA JO40_11860 IPR002545 CheW-like domain JO40_11860 IPR004105 Histidine kinase CheA-like, homodimeric domain JO40_11860 IPR036061 CheW-like domain superfamily JO40_11860 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain JO40_11860 IPR004358 Signal transduction histidine kinase-related protein, C-terminal JO40_11860 IPR036641 HPT domain superfamily JO40_11860 IPR005467 Histidine kinase domain JO40_11860 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO40_11860 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding JO40_11860 IPR003594 Histidine kinase/HSP90-like ATPase JO40_11875 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I JO40_11875 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain JO40_11875 IPR036291 NAD(P)-binding domain superfamily JO40_11875 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain JO40_11875 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site JO40_11875 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family JO40_11880 IPR026564 Transcriptional regulator TACO1-like, domain 3 JO40_11880 IPR002876 Transcriptional regulator TACO1-like JO40_11880 IPR017856 Integrase-like, N-terminal JO40_11880 IPR029072 YebC-like JO40_11905 IPR000994 Peptidase M24 JO40_11905 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site JO40_11905 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal JO40_11905 IPR036005 Creatinase/aminopeptidase-like JO40_11905 IPR000587 Creatinase, N-terminal JO40_11930 IPR001029 Flagellin, D0/D1 domain JO40_11930 IPR001492 Flagellin JO40_11935 IPR001492 Flagellin JO40_11935 IPR001029 Flagellin, D0/D1 domain JO40_11945 IPR010809 Flagellar hook-associated protein 2, C-terminal JO40_11945 IPR003481 Flagellar hook-associated protein 2, N-terminal JO40_11945 IPR040026 Flagellar hook-associated protein 2 JO40_11960 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE JO40_11960 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_11970 IPR037522 HD-GYP domain JO40_11970 IPR003607 HD/PDEase domain JO40_11970 IPR003660 HAMP domain JO40_11970 IPR006674 HD domain JO40_11975 IPR004559 Heme chaperone HemW-like JO40_11975 IPR023404 Radical SAM, alpha/beta horseshoe JO40_11975 IPR007197 Radical SAM JO40_11975 IPR010723 HemN, C-terminal JO40_11975 IPR006638 Elp3/MiaB/NifB JO40_11975 IPR034505 Anaerobic coproporphyrinogen-III oxidase JO40_11980 IPR019533 Peptidase S26 JO40_11980 IPR019756 Peptidase S26A, signal peptidase I, serine active site JO40_11980 IPR019757 Peptidase S26A, signal peptidase I, lysine active site JO40_11980 IPR019758 Peptidase S26A, signal peptidase I, conserved site JO40_11980 IPR036286 LexA/Signal peptidase-like superfamily JO40_11980 IPR000223 Peptidase S26A, signal peptidase I JO40_12000 IPR004299 Membrane bound O-acyl transferase, MBOAT JO40_12000 IPR028362 Alginate O-acetyltransferase AlgI JO40_12000 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB JO40_12020 IPR010201 HflK JO40_12020 IPR036013 Band 7/SPFH domain superfamily JO40_12020 IPR001107 Band 7 domain JO40_12030 IPR003796 Ribonucleotide reductase regulator NrdR-like JO40_12030 IPR005144 ATP-cone domain JO40_12060 IPR035647 EF-G domain III/V-like JO40_12060 IPR023582 Impact family JO40_12060 IPR015796 Impact family, bacterial/archaeal JO40_12060 IPR001498 Impact, N-terminal JO40_12060 IPR036956 Impact, N-terminal domain superfamily JO40_12060 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_12060 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site JO40_12060 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal JO40_12090 IPR005311 Penicillin-binding protein, dimerisation domain JO40_12090 IPR036138 Penicillin-binding protein, dimerisation domain superfamily JO40_12090 IPR001460 Penicillin-binding protein, transpeptidase JO40_12090 IPR012338 Beta-lactamase/transpeptidase-like JO40_12100 IPR033186 Helicase HerA-like C-terminal JO40_12100 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12105 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_12105 IPR002941 DNA methylase N-4/N-6 JO40_12105 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO40_12105 IPR001091 Restriction/modification DNA-methylase JO40_12140 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like JO40_12165 IPR039672 Lactose permease-like JO40_12165 IPR018043 Sodium:galactoside symporter, conserved site JO40_12165 IPR001927 Sodium:galactoside symporter JO40_12165 IPR036259 MFS transporter superfamily JO40_12165 IPR011055 Duplicated hybrid motif JO40_12165 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 JO40_12170 IPR017853 Glycoside hydrolase superfamily JO40_12170 IPR013780 Glycosyl hydrolase, all-beta JO40_12170 IPR031704 Glycosyl hydrolase family 36, N-terminal JO40_12170 IPR031705 Glycosyl hydrolase family 36, C-terminal JO40_12170 IPR002252 Glycoside hydrolase family 36 JO40_12170 IPR000111 Glycoside hydrolase family 27/36, conserved site JO40_12170 IPR038417 Alpha-galactosidase, N-terminal domain superfamily JO40_12170 IPR013785 Aldolase-type TIM barrel JO40_12185 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain JO40_12185 IPR010914 RsgA GTPase domain JO40_12185 IPR004881 Ribosome biogenesis GTPase RsgA JO40_12185 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12190 IPR015942 Asp/Glu/hydantoin racemase JO40_12190 IPR001920 Asp/Glu racemase JO40_12190 IPR018187 Asp/Glu racemase, active site 1 JO40_12190 IPR004391 Glutamate racemase JO40_12195 IPR018022 IPP transferase JO40_12195 IPR039657 Dimethylallyltransferase JO40_12195 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12210 IPR030678 Peptide/nickel binding protein, MppA-type JO40_12210 IPR000914 Solute-binding protein family 5 domain JO40_12210 IPR039424 Solute-binding protein family 5 JO40_12210 IPR023765 Solute-binding protein family 5, conserved site JO40_12230 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO40_12230 IPR033705 Valyl tRNA synthetase, anticodon-binding domain JO40_12230 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO40_12230 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_12230 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO40_12230 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily JO40_12230 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm JO40_12230 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO40_12230 IPR002303 Valine-tRNA ligase JO40_12230 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO40_12230 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm JO40_12235 IPR006043 Xanthine/uracil/vitamin C permease JO40_12235 IPR026033 Azaguanine-like transporters JO40_12245 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase JO40_12245 IPR015443 Aldose 1-epimerase JO40_12245 IPR018052 Aldose 1-epimerase, conserved site JO40_12245 IPR014718 Glycoside hydrolase-type carbohydrate-binding JO40_12245 IPR011013 Galactose mutarotase-like domain superfamily JO40_12260 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site JO40_12260 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA JO40_12260 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB JO40_12265 IPR017790 Penicillin-binding protein 2 JO40_12265 IPR001460 Penicillin-binding protein, transpeptidase JO40_12265 IPR036138 Penicillin-binding protein, dimerisation domain superfamily JO40_12265 IPR005311 Penicillin-binding protein, dimerisation domain JO40_12265 IPR012338 Beta-lactamase/transpeptidase-like JO40_12280 IPR004753 Cell shape determining protein MreB JO40_12295 IPR014284 RNA polymerase sigma-70 like domain JO40_12295 IPR009042 RNA polymerase sigma-70 region 1.2 JO40_12295 IPR007127 RNA polymerase sigma factor 70, region 1.1 JO40_12295 IPR007627 RNA polymerase sigma-70 region 2 JO40_12295 IPR000943 RNA polymerase sigma-70 JO40_12295 IPR007624 RNA polymerase sigma-70 region 3 JO40_12295 IPR028630 RNA polymerase sigma factor RpoD JO40_12295 IPR012760 RNA polymerase sigma factor RpoD, C-terminal JO40_12295 IPR013324 RNA polymerase sigma factor, region 3/4-like JO40_12295 IPR013325 RNA polymerase sigma factor, region 2 JO40_12295 IPR007630 RNA polymerase sigma-70 region 4 JO40_12295 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_12300 IPR013264 DNA primase, catalytic core, N-terminal JO40_12300 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily JO40_12300 IPR036977 DNA Primase, CHC2-type zinc finger JO40_12300 IPR002694 Zinc finger, CHC2-type JO40_12300 IPR030846 DNA primase DnaG, bacteria JO40_12300 IPR006295 DNA primase, DnaG JO40_12300 IPR034151 Bacterial DnaG primase, TOPRIM domain JO40_12300 IPR006171 TOPRIM domain JO40_12305 IPR025158 Mg chelatase-related protein, C-terminal domain JO40_12305 IPR000523 Magnesium chelatase ChlI domain JO40_12305 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12305 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_12305 IPR004482 Mg chelatase-related protein JO40_12305 IPR003593 AAA+ ATPase domain JO40_12320 IPR005843 Alpha-D-phosphohexomutase, C-terminal JO40_12320 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily JO40_12320 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III JO40_12320 IPR005841 Alpha-D-phosphohexomutase superfamily JO40_12320 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II JO40_12320 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III JO40_12320 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I JO40_12320 IPR016066 Alpha-D-phosphohexomutase, conserved site JO40_12325 IPR036397 Ribonuclease H superfamily JO40_12325 IPR012337 Ribonuclease H-like superfamily JO40_12325 IPR013520 Exonuclease, RNase T/DNA polymerase III JO40_12325 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain JO40_12330 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12330 IPR011527 ABC transporter type 1, transmembrane domain JO40_12330 IPR039421 Type I protein exporter JO40_12330 IPR017871 ABC transporter, conserved site JO40_12330 IPR003439 ABC transporter-like JO40_12330 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_12330 IPR003593 AAA+ ATPase domain JO40_12335 IPR004438 Peptidase M3B, oligoendopeptidase F JO40_12335 IPR013647 Oligopeptidase F, N-terminal domain JO40_12335 IPR001567 Peptidase M3A/M3B catalytic domain JO40_12335 IPR042088 Oligoendopeptidase F, C-terminal domain JO40_12345 IPR022737 RNA polymerase recycling, bacterial, C-terminal JO40_12345 IPR038718 SNF2-like, N-terminal domain superfamily JO40_12345 IPR000330 SNF2-related, N-terminal domain JO40_12345 IPR040765 RapA, N-terminal Tudor like domain 1 JO40_12345 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12345 IPR023949 RNA polymerase-associated protein RapA JO40_12345 IPR040766 RapA, N-terminal Tudor-like domain 2 JO40_12345 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO40_12345 IPR001650 Helicase, C-terminal JO40_12365 IPR006120 Resolvase, HTH domain JO40_12365 IPR006118 Recombinase, conserved site JO40_12365 IPR006119 Resolvase, N-terminal catalytic domain JO40_12365 IPR009057 Homeobox-like domain superfamily JO40_12365 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily JO40_12380 IPR003593 AAA+ ATPase domain JO40_12380 IPR011527 ABC transporter type 1, transmembrane domain JO40_12380 IPR017938 Riboflavin synthase-like beta-barrel JO40_12380 IPR007037 Siderophore-interacting protein, C-terminal domain JO40_12380 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_12380 IPR003439 ABC transporter-like JO40_12380 IPR017871 ABC transporter, conserved site JO40_12380 IPR013113 FAD-binding 9, siderophore-interacting JO40_12380 IPR017927 FAD-binding domain, ferredoxin reductase-type JO40_12380 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO40_12380 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12390 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12390 IPR039421 Type I protein exporter JO40_12390 IPR003439 ABC transporter-like JO40_12390 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO40_12390 IPR011527 ABC transporter type 1, transmembrane domain JO40_12390 IPR003593 AAA+ ATPase domain JO40_12390 IPR011917 ABC transporter, lipid A export, MsbA JO40_12390 IPR017871 ABC transporter, conserved site JO40_12770 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal JO40_12770 IPR006665 OmpA-like domain JO40_12770 IPR039001 Peptidoglycan-associated lipoprotein JO40_12770 IPR036737 OmpA-like domain superfamily JO40_12770 IPR006690 Outer membrane protein, OmpA-like, conserved site JO40_12770 IPR006664 Outer membrane protein, bacterial JO40_12775 IPR015991 Uncharacterised hydrolase TatD-type JO40_12775 IPR001130 TatD family JO40_12775 IPR032466 Metal-dependent hydrolase JO40_12775 IPR018228 Deoxyribonuclease, TatD-related, conserved site JO40_12785 IPR012997 Rare lipoprotein A JO40_12785 IPR036908 RlpA-like domain superfamily JO40_12785 IPR009009 RlpA-like protein, double-psi beta-barrel domain JO40_12785 IPR034718 Endolytic peptidoglycan transglycosylase RlpA JO40_12795 IPR001296 Glycosyl transferase, family 1 JO40_12795 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain JO40_12805 IPR003593 AAA+ ATPase domain JO40_12805 IPR003959 ATPase, AAA-type, core JO40_12805 IPR019489 Clp ATPase, C-terminal JO40_12805 IPR036628 Clp, N-terminal domain superfamily JO40_12805 IPR004176 Clp, N-terminal JO40_12805 IPR001270 ClpA/B family JO40_12805 IPR018368 ClpA/B, conserved site 1 JO40_12805 IPR028299 ClpA/B, conserved site 2 JO40_12805 IPR041546 ClpA/ClpB, AAA lid domain JO40_12805 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12805 IPR001943 UVR domain JO40_12810 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain JO40_12810 IPR022414 ATP:guanido phosphotransferase, catalytic domain JO40_12810 IPR022415 ATP:guanido phosphotransferase active site JO40_12810 IPR023660 Protein arginine kinase JO40_12810 IPR000749 ATP:guanido phosphotransferase JO40_12815 IPR025542 YacH protein JO40_12815 IPR001510 Zinc finger, PARP-type JO40_12815 IPR001943 UVR domain JO40_12825 IPR003593 AAA+ ATPase domain JO40_12825 IPR015854 ABC transporter, lipoprotein release, LolD JO40_12825 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12825 IPR003439 ABC transporter-like JO40_12825 IPR017871 ABC transporter, conserved site JO40_12830 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E JO40_12830 IPR003838 ABC transporter permease protein domain JO40_12830 IPR025857 MacB-like periplasmic core domain JO40_12840 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12840 IPR013822 Signal recognition particle SRP54, helical bundle JO40_12840 IPR004390 Signal-recognition particle receptor FtsY JO40_12840 IPR036225 SRP/SRP receptor, N-terminal JO40_12840 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO40_12840 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily JO40_12840 IPR003593 AAA+ ATPase domain JO40_12855 IPR004374 Peptide chain release factor 2 JO40_12855 IPR000352 Peptide chain release factor class I JO40_12855 IPR005139 Peptide chain release factor JO40_12895 IPR036921 PurM-like, N-terminal domain superfamily JO40_12895 IPR010074 Phosphoribosylformylglycinamidine subunit PurL JO40_12895 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain JO40_12895 IPR010918 PurM-like, C-terminal domain JO40_12895 IPR036676 PurM-like, C-terminal domain superfamily JO40_12895 IPR016188 PurM-like, N-terminal domain JO40_12900 IPR006340 Protein of unknown function DUF436 JO40_12900 IPR028345 Aminoglycoside 3-N-acetyltransferase-like JO40_12910 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO40_12910 IPR018631 AAA-ATPase-like domain JO40_12915 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding JO40_12915 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO40_12915 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain JO40_12915 IPR036010 2Fe-2S ferredoxin-like superfamily JO40_12915 IPR004108 Iron hydrogenase, large subunit, C-terminal JO40_12915 IPR009016 Iron hydrogenase JO40_12915 IPR036991 Iron hydrogenase, small subunit superfamily JO40_12915 IPR013352 Iron hydrogenase, subset JO40_12915 IPR003149 Iron hydrogenase, small subunit JO40_12915 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO40_12935 IPR003439 ABC transporter-like JO40_12935 IPR017871 ABC transporter, conserved site JO40_12935 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_12935 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12935 IPR003593 AAA+ ATPase domain JO40_12940 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO40_12940 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_12940 IPR003439 ABC transporter-like JO40_12940 IPR017871 ABC transporter, conserved site JO40_12940 IPR003593 AAA+ ATPase domain JO40_12955 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_12955 IPR041368 Dam-replacing protein, HTH domain JO40_12955 IPR010324 Dam-replacing JO40_12960 IPR011761 ATP-grasp fold JO40_12960 IPR020559 Phosphoribosylglycinamide synthetase, conserved site JO40_12960 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal JO40_12960 IPR011054 Rudiment single hybrid motif JO40_12960 IPR000115 Phosphoribosylglycinamide synthetase JO40_12960 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JO40_12960 IPR016185 Pre-ATP-grasp domain superfamily JO40_12960 IPR013815 ATP-grasp fold, subdomain 1 JO40_12960 IPR020560 Phosphoribosylglycinamide synthetase, C-domain JO40_12960 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily JO40_12965 IPR016188 PurM-like, N-terminal domain JO40_12965 IPR036676 PurM-like, C-terminal domain superfamily JO40_12965 IPR010918 PurM-like, C-terminal domain JO40_12965 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase JO40_12965 IPR036921 PurM-like, N-terminal domain superfamily JO40_12975 IPR011005 Dihydropteroate synthase-like JO40_12975 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial JO40_12975 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type JO40_12980 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_12985 IPR001940 Peptidase S1C JO40_12985 IPR009003 Peptidase S1, PA clan JO40_12985 IPR011782 Peptidase S1C, Do JO40_12985 IPR036034 PDZ superfamily JO40_12985 IPR001478 PDZ domain JO40_12985 IPR041489 PDZ domain 6 JO40_12990 IPR011990 Tetratricopeptide-like helical domain superfamily JO40_13000 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO40_13000 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal JO40_13000 IPR012094 tRNA(Ile)-lysidine synthase JO40_13000 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal JO40_13000 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal JO40_13005 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal JO40_13005 IPR001021 Ribosomal protein L25, long-form JO40_13005 IPR037121 Ribosomal protein L25, C-terminal JO40_13005 IPR020057 Ribosomal protein L25, beta domain JO40_13005 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily JO40_13005 IPR029751 Ribosomal protein L25 JO40_13015 IPR036751 Stage V sporulation protein G superfamily JO40_13015 IPR007170 Stage V sporulation protein G JO40_13020 IPR013750 GHMP kinase, C-terminal domain JO40_13020 IPR036554 GHMP kinase, C-terminal domain superfamily JO40_13020 IPR006204 GHMP kinase N-terminal domain JO40_13020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_13020 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase JO40_13020 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_13025 IPR009061 Putative DNA-binding domain superfamily JO40_13025 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 JO40_13025 IPR022918 Phenylalanine-tRNA ligase beta chain 2, bacterial/archaeal JO40_13025 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain JO40_13025 IPR005147 tRNA synthetase, B5-domain JO40_13025 IPR005146 B3/B4 tRNA-binding domain JO40_13025 IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic JO40_13040 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like JO40_13090 IPR042229 Listeria-Bacteroides repeat domain superfamily JO40_13090 IPR013378 Listeria/Bacterioides repeat JO40_13090 IPR011493 GLUG JO40_13125 IPR036986 RNA-binding S4 domain superfamily JO40_13125 IPR002942 RNA-binding S4 domain JO40_13125 IPR022801 Ribosomal protein S4/S9 JO40_13125 IPR001912 Ribosomal protein S4/S9, N-terminal JO40_13125 IPR018079 Ribosomal protein S4, conserved site JO40_13125 IPR005709 Ribosomal protein S4, bacterial-type JO40_13170 IPR028082 Periplasmic binding protein-like I JO40_13170 IPR003760 ABC transporter substrate-binding protein PnrA-like JO40_13175 IPR023367 Peptidase M42, domain 2 JO40_13175 IPR008007 Peptidase M42 JO40_13180 IPR016185 Pre-ATP-grasp domain superfamily JO40_13180 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site JO40_13180 IPR011095 D-alanine--D-alanine ligase, C-terminal JO40_13180 IPR011761 ATP-grasp fold JO40_13180 IPR013815 ATP-grasp fold, subdomain 1 JO40_13180 IPR005905 D-alanine--D-alanine ligase JO40_13180 IPR011127 D-alanine--D-alanine ligase, N-terminal domain JO40_13190 IPR017853 Glycoside hydrolase superfamily JO40_13190 IPR003385 Glycoside hydrolase, family 77 JO40_13195 IPR033135 ClpP, histidine active site JO40_13195 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA JO40_13195 IPR029045 ClpP/crotonase-like domain superfamily JO40_13195 IPR001907 ATP-dependent Clp protease proteolytic subunit JO40_13200 IPR004485 Cobalamin biosynthesis CobD/CbiB JO40_13210 IPR029000 Cyclophilin-like domain superfamily JO40_13210 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site JO40_13210 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain JO40_13220 IPR038247 Jag, N-terminal domain superfamily JO40_13220 IPR039247 Jag protein JO40_13220 IPR038008 Jag, KH domain JO40_13220 IPR032782 Jag, N-terminal JO40_13220 IPR034079 Jag, R3H domain JO40_13220 IPR036867 R3H domain superfamily JO40_13220 IPR015946 K homology domain-like, alpha/beta JO40_13220 IPR001374 R3H domain JO40_13225 IPR038210 Membrane insertase YidC, periplasmic domain JO40_13225 IPR038221 YidC, periplasmic domain superfamily JO40_13225 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 JO40_13225 IPR028053 Membrane insertase YidC, N-terminal JO40_13225 IPR028055 Membrane insertase YidC/Oxa1, C-terminal JO40_13225 IPR019998 Membrane insertase YidC JO40_13230 IPR002696 Putative membrane protein insertion efficiency factor JO40_13235 IPR020568 Ribosomal protein S5 domain 2-type fold JO40_13235 IPR020539 Ribonuclease P, conserved site JO40_13235 IPR000100 Ribonuclease P JO40_13235 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO40_13240 IPR000271 Ribosomal protein L34 JO40_13245 IPR015943 WD40/YVTN repeat-like-containing domain superfamily JO40_13245 IPR019405 Lactonase, 7-bladed beta propeller JO40_13245 IPR011045 Nitrous oxide reductase, N-terminal JO40_13250 IPR006129 Adhesin B JO40_13250 IPR006128 Adhesion lipoprotein JO40_13250 IPR006127 Periplasmic solute binding protein, ZnuA-like JO40_13255 IPR003439 ABC transporter-like JO40_13255 IPR003593 AAA+ ATPase domain JO40_13255 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_13255 IPR017871 ABC transporter, conserved site JO40_13260 IPR001626 ABC transporter, TroCD-like JO40_13260 IPR037294 ABC transporter, BtuC-like JO40_13275 IPR002772 Glycoside hydrolase family 3 C-terminal domain JO40_13275 IPR019800 Glycoside hydrolase, family 3, active site JO40_13275 IPR001764 Glycoside hydrolase, family 3, N-terminal JO40_13275 IPR017853 Glycoside hydrolase superfamily JO40_13275 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily JO40_13275 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily JO40_13290 IPR040627 T3SS EscN ATPase, C-terminal JO40_13290 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_13290 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO40_13290 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 JO40_13290 IPR005714 ATPase, type III secretion system, FliI/YscN JO40_13290 IPR003593 AAA+ ATPase domain JO40_13290 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site JO40_13290 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO40_13290 IPR032463 ATPase, type III secretion system, FliI JO40_13295 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE JO40_13300 IPR011002 Flagellar motor switch protein FliG, alpha-helical JO40_13300 IPR023087 Flagellar motor switch protein FliG, C-terminal JO40_13300 IPR000090 Flagellar motor switch protein FliG JO40_13300 IPR028263 Flagellar motor switch protein FliG, N-terminal domain JO40_13300 IPR032779 Flagellar motor switch protein FliG, middle domain JO40_13305 IPR000067 Flagellar M-ring protein FliF JO40_13305 IPR013556 Flagellar M-ring C-terminal JO40_13305 IPR006182 Secretory protein YscJ/FliF JO40_13310 IPR001624 Flagellar hook-basal body complex protein FliE JO40_13315 IPR006299 Flagellar basal-body rod protein FlgC JO40_13315 IPR001444 Flagellar basal body rod protein, N-terminal JO40_13315 IPR019776 Flagellar basal body rod protein, conserved site JO40_13315 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO40_13320 IPR001444 Flagellar basal body rod protein, N-terminal JO40_13320 IPR006300 Flagellar basal-body rod protein FlgB JO40_13320 IPR019776 Flagellar basal body rod protein, conserved site JO40_13325 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO40_13325 IPR004491 Heat shock protein HslU JO40_13325 IPR003959 ATPase, AAA-type, core JO40_13325 IPR003593 AAA+ ATPase domain JO40_13325 IPR019489 Clp ATPase, C-terminal JO40_13330 IPR023333 Proteasome B-type subunit JO40_13330 IPR022281 ATP-dependent protease, HslV subunit JO40_13330 IPR029055 Nucleophile aminohydrolases, N-terminal JO40_13330 IPR001353 Proteasome, subunit alpha/beta JO40_13335 IPR002104 Integrase, catalytic domain JO40_13335 IPR023009 Tyrosine recombinase XerC/XerD JO40_13335 IPR004107 Integrase, SAM-like, N-terminal JO40_13335 IPR010998 Integrase/recombinase, N-terminal JO40_13335 IPR013762 Integrase-like, catalytic domain superfamily JO40_13335 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO40_13340 IPR013498 DNA topoisomerase, type IA, zn finger JO40_13340 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 JO40_13340 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 JO40_13340 IPR023405 DNA topoisomerase, type IA, core domain JO40_13340 IPR023406 DNA topoisomerase, type IA, active site JO40_13340 IPR003601 DNA topoisomerase, type IA, domain 2 JO40_13340 IPR003602 DNA topoisomerase, type IA, DNA-binding domain JO40_13340 IPR006171 TOPRIM domain JO40_13340 IPR034149 DNA topoisomerase 1, TOPRIM domain JO40_13340 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 JO40_13340 IPR028612 DNA topoisomerase I, type IA JO40_13340 IPR005733 DNA topoisomerase I, bacterial-type JO40_13340 IPR000380 DNA topoisomerase, type IA JO40_13340 IPR013497 DNA topoisomerase, type IA, central JO40_13345 IPR041614 DprA, winged helix domain JO40_13345 IPR036388 Winged helix-like DNA-binding domain superfamily JO40_13345 IPR003488 DNA recombination-mediator protein A JO40_13355 IPR013762 Integrase-like, catalytic domain superfamily JO40_13355 IPR002104 Integrase, catalytic domain JO40_13355 IPR023009 Tyrosine recombinase XerC/XerD JO40_13355 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO40_13355 IPR010998 Integrase/recombinase, N-terminal JO40_13355 IPR004107 Integrase, SAM-like, N-terminal JO40_13355 IPR011932 Tyrosine recombinase XerD JO40_13360 IPR036525 Tubulin/FtsZ, GTPase domain superfamily JO40_13360 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain JO40_13360 IPR020805 Cell division protein FtsZ, conserved site JO40_13360 IPR000158 Cell division protein FtsZ JO40_13360 IPR008280 Tubulin/FtsZ, C-terminal JO40_13360 IPR003008 Tubulin/FtsZ, GTPase domain JO40_13360 IPR024757 Cell division protein FtsZ, C-terminal JO40_13365 IPR020823 Cell division protein FtsA JO40_13365 IPR003494 SHS2 domain inserted in FtsA JO40_13370 IPR034746 POTRA domain JO40_13370 IPR005548 Cell division protein FtsQ/DivIB JO40_13370 IPR013685 POTRA domain, FtsQ-type JO40_13370 IPR026579 Cell division protein FtsQ JO40_13375 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA JO40_13375 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site JO40_13375 IPR013437 Probable peptidoglycan glycosyltransferase FtsW JO40_13395 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO40_13395 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily JO40_13395 IPR002903 Ribosomal RNA small subunit methyltransferase H JO40_13400 IPR020603 MraZ domain JO40_13400 IPR038619 MraZ superfamily JO40_13400 IPR035644 MraZ, C-terminal JO40_13400 IPR037914 SpoVT-AbrB domain superfamily JO40_13400 IPR003444 Transcriptional regulator MraZ JO40_13400 IPR035642 MraZ, N-terminal JO40_13400 IPR007159 SpoVT-AbrB domain JO40_13405 IPR002470 Peptidase S9A, prolyl oligopeptidase JO40_13405 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain JO40_13405 IPR023302 Peptidase S9A, N-terminal domain JO40_13405 IPR029058 Alpha/Beta hydrolase fold JO40_13405 IPR002471 Peptidase S9, serine active site