locus-tag class description JO40_00025 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JO40_00025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JO40_00025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JO40_00035 PF02233 NAD(P) transhydrogenase beta subunit JO40_00040 PF08264 Anticodon-binding domain of tRNA JO40_00040 PF00133 tRNA synthetases class I (I, L, M and V) JO40_00040 PF13603 Leucyl-tRNA synthetase, Domain 2 JO40_00040 PF09334 tRNA synthetases class I (M) JO40_00050 PF17820 PDZ domain JO40_00050 PF02163 Peptidase family M50 JO40_00055 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JO40_00055 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JO40_00055 PF13288 DXP reductoisomerase C-terminal domain JO40_00065 PF01255 Putative undecaprenyl diphosphate synthase JO40_00070 PF01765 Ribosome recycling factor JO40_00075 PF00889 Elongation factor TS JO40_00080 PF00318 Ribosomal protein S2 JO40_00085 PF02545 Maf-like protein JO40_00105 PF07196 Flagellin hook IN motif JO40_00105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_00110 PF00700 Bacterial flagellin C-terminal helical region JO40_00110 PF07196 Flagellin hook IN motif JO40_00110 PF00669 Bacterial flagellin N-terminal helical region JO40_00115 PF02623 FliW protein JO40_00120 PF02599 Global regulator protein family JO40_00130 PF01464 Transglycosylase SLT domain JO40_00130 PF01551 Peptidase family M23 JO40_00130 PF10145 Phage-related minor tail protein JO40_00155 PF00924 Mechanosensitive ion channel JO40_00175 PF02743 Cache domain JO40_00175 PF00672 HAMP domain JO40_00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_00200 PF00528 Binding-protein-dependent transport system inner membrane component JO40_00205 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_00205 PF00528 Binding-protein-dependent transport system inner membrane component JO40_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_00210 PF00005 ABC transporter JO40_00215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_00215 PF00005 ABC transporter JO40_00220 PF00266 Aminotransferase class-V JO40_00225 PF00586 AIR synthase related protein, N-terminal domain JO40_00225 PF02769 AIR synthase related protein, C-terminal domain JO40_00245 PF01206 Sulfurtransferase TusA JO40_00260 PF02772 S-adenosylmethionine synthetase, central domain JO40_00260 PF00438 S-adenosylmethionine synthetase, N-terminal domain JO40_00260 PF02773 S-adenosylmethionine synthetase, C-terminal domain JO40_00270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_00275 PF00528 Binding-protein-dependent transport system inner membrane component JO40_00280 PF00528 Binding-protein-dependent transport system inner membrane component JO40_00280 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_00285 PF00005 ABC transporter JO40_00285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_00290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_00290 PF00005 ABC transporter JO40_00310 PF01588 Putative tRNA binding domain JO40_00310 PF09334 tRNA synthetases class I (M) JO40_00320 PF00005 ABC transporter JO40_00340 PF01554 MatE JO40_00345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00345 PF00672 HAMP domain JO40_00345 PF02743 Cache domain JO40_00350 PF03553 Na+/H+ antiporter family JO40_00365 PF02954 Bacterial regulatory protein, Fis family JO40_00365 PF00989 PAS fold JO40_00365 PF00158 Sigma-54 interaction domain JO40_00375 PF00301 Rubredoxin JO40_00390 PF03144 Elongation factor Tu domain 2 JO40_00390 PF00679 Elongation factor G C-terminus JO40_00390 PF14492 Elongation Factor G, domain II JO40_00390 PF03764 Elongation factor G, domain IV JO40_00390 PF00009 Elongation factor Tu GTP binding domain JO40_00395 PF00177 Ribosomal protein S7p/S5e JO40_00400 PF00164 Ribosomal protein S12/S23 JO40_00405 PF11756 Nitrous oxide-stimulated promoter JO40_00415 PF10371 Domain of unknown function JO40_00415 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JO40_00415 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JO40_00415 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JO40_00415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme JO40_00435 PF03553 Na+/H+ antiporter family JO40_00455 PF03781 Sulfatase-modifying factor enzyme 1 JO40_00470 PF00005 ABC transporter JO40_00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_00515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JO40_00530 PF01784 NIF3 (NGG1p interacting factor 3) JO40_00540 PF10509 Galactokinase galactose-binding signature JO40_00540 PF00288 GHMP kinases N terminal domain JO40_00540 PF08544 GHMP kinases C terminal JO40_00555 PF00266 Aminotransferase class-V JO40_00585 PF01544 CorA-like Mg2+ transporter protein JO40_00590 PF01743 Poly A polymerase head domain JO40_00590 PF13735 tRNA nucleotidyltransferase domain 2 putative JO40_00590 PF12627 Probable RNA and SrmB- binding site of polymerase A JO40_00605 PF00011 Hsp20/alpha crystallin family JO40_00615 PF00550 Phosphopantetheine attachment site JO40_00620 PF01783 Ribosomal L32p protein family JO40_00630 PF02310 B12 binding domain JO40_00640 PF16811 TRAP transporter T-component JO40_00650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JO40_00660 PF13742 OB-fold nucleic acid binding domain JO40_00660 PF02601 Exonuclease VII, large subunit JO40_00665 PF13654 AAA domain JO40_00665 PF05362 Lon protease (S16) C-terminal proteolytic domain JO40_00675 PF01814 Hemerythrin HHE cation binding domain JO40_00680 PF00575 S1 RNA binding domain JO40_00680 PF17674 HHH domain JO40_00680 PF16921 Tex protein YqgF-like domain JO40_00680 PF09371 Tex-like protein N-terminal domain JO40_00690 PF17760 UvrA interaction domain JO40_00690 PF00005 ABC transporter JO40_00690 PF17755 UvrA DNA-binding domain JO40_00695 PF02609 Exonuclease VII small subunit JO40_00700 PF01119 DNA mismatch repair protein, C-terminal domain JO40_00700 PF08676 MutL C terminal dimerisation domain JO40_00705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00705 PF00672 HAMP domain JO40_00705 PF02743 Cache domain JO40_00705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00705 PF00672 HAMP domain JO40_00705 PF02743 Cache domain JO40_00710 PF00072 Response regulator receiver domain JO40_00710 PF00672 HAMP domain JO40_00710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JO40_00710 PF00512 His Kinase A (phospho-acceptor) domain JO40_00710 PF01627 Hpt domain JO40_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_00715 PF00072 Response regulator receiver domain JO40_00715 PF00486 Transcriptional regulatory protein, C terminal JO40_00725 PF08241 Methyltransferase domain JO40_00740 PF00899 ThiF family JO40_00745 PF00953 Glycosyl transferase family 4 JO40_00750 PF05000 RNA polymerase Rpb1, domain 4 JO40_00750 PF04998 RNA polymerase Rpb1, domain 5 JO40_00750 PF04997 RNA polymerase Rpb1, domain 1 JO40_00750 PF00623 RNA polymerase Rpb1, domain 2 JO40_00750 PF04983 RNA polymerase Rpb1, domain 3 JO40_00755 PF04563 RNA polymerase beta subunit JO40_00755 PF04561 RNA polymerase Rpb2, domain 2 JO40_00755 PF10385 RNA polymerase beta subunit external 1 domain JO40_00755 PF00562 RNA polymerase Rpb2, domain 6 JO40_00755 PF04560 RNA polymerase Rpb2, domain 7 JO40_00755 PF04565 RNA polymerase Rpb2, domain 3 JO40_00765 PF00542 Ribosomal protein L7/L12 C-terminal domain JO40_00765 PF16320 Ribosomal protein L7/L12 dimerisation domain JO40_00770 PF00466 Ribosomal protein L10 JO40_00775 PF00687 Ribosomal protein L1p/L10e family JO40_00780 PF00298 Ribosomal protein L11, RNA binding domain JO40_00780 PF03946 Ribosomal protein L11, N-terminal domain JO40_00785 PF00467 KOW motif JO40_00785 PF02357 Transcription termination factor nusG JO40_00790 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JO40_00800 PF00471 Ribosomal protein L33 JO40_00820 PF00005 ABC transporter JO40_00820 PF00664 ABC transporter transmembrane region JO40_00820 PF03412 Peptidase C39 family JO40_00855 PF00183 Hsp90 protein JO40_00865 PF13361 UvrD-like helicase C-terminal domain JO40_00865 PF00580 UvrD/REP helicase N-terminal domain JO40_00870 PF00005 ABC transporter JO40_00870 PF00664 ABC transporter transmembrane region JO40_00875 PF00005 ABC transporter JO40_00875 PF00664 ABC transporter transmembrane region JO40_00880 PF07687 Peptidase dimerisation domain JO40_00880 PF01546 Peptidase family M20/M25/M40 JO40_00900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO40_00900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO40_00910 PF00730 HhH-GPD superfamily base excision DNA repair protein JO40_00915 PF00672 HAMP domain JO40_00915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_00915 PF16591 Helical bimodular sensor domain JO40_00925 PF02719 Polysaccharide biosynthesis protein JO40_00930 PF09820 Predicted AAA-ATPase JO40_00930 PF08011 PD-(D/E)XK nuclease superfamily JO40_00935 PF03819 MazG nucleotide pyrophosphohydrolase domain JO40_00950 PF02824 TGS domain JO40_00950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_00950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_00950 PF03129 Anticodon binding domain JO40_00960 PF00814 Glycoprotease family JO40_00975 PF12833 Helix-turn-helix domain JO40_00975 PF14525 AraC-binding-like domain JO40_00985 PF00664 ABC transporter transmembrane region JO40_00985 PF00005 ABC transporter JO40_00990 PF00171 Aldehyde dehydrogenase family JO40_00995 PF02527 rRNA small subunit methyltransferase G JO40_01030 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JO40_01040 PF06745 KaiC JO40_01040 PF18073 Rubredoxin metal binding domain JO40_01045 PF10609 NUBPL iron-transfer P-loop NTPase JO40_01050 PF08011 PD-(D/E)XK nuclease superfamily JO40_01050 PF09820 Predicted AAA-ATPase JO40_01060 PF00005 ABC transporter JO40_01065 PF01032 FecCD transport family JO40_01070 PF01497 Periplasmic binding protein JO40_01075 PF05034 Methylaspartate ammonia-lyase N-terminus JO40_01075 PF07476 Methylaspartate ammonia-lyase C-terminus JO40_01080 PF06368 Methylaspartate mutase E chain (MutE) JO40_01085 PF01979 Amidohydrolase family JO40_01095 PF00270 DEAD/DEAH box helicase JO40_01095 PF00271 Helicase conserved C-terminal domain JO40_01100 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JO40_01120 PF00005 ABC transporter JO40_01120 PF13732 Domain of unknown function (DUF4162) JO40_01125 PF00672 HAMP domain JO40_01125 PF07228 Stage II sporulation protein E (SpoIIE) JO40_01135 PF03687 Uncharacterised protein family (UPF0164) JO40_01140 PF00521 DNA gyrase/topoisomerase IV, subunit A JO40_01150 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_01155 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_01160 PF09338 Glycine/sarcosine/betaine reductase component B subunits JO40_01165 PF02677 Epoxyqueuosine reductase QueH JO40_01175 PF02617 ATP-dependent Clp protease adaptor protein ClpS JO40_01180 PF07724 AAA domain (Cdc48 subfamily) JO40_01180 PF00004 ATPase family associated with various cellular activities (AAA) JO40_01180 PF17871 AAA lid domain JO40_01180 PF02861 Clp amino terminal domain, pathogenicity island component JO40_01180 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_01185 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JO40_01190 PF03006 Haemolysin-III related JO40_01195 PF02661 Fic/DOC family JO40_01195 PF12728 Helix-turn-helix domain JO40_01200 PF02190 ATP-dependent protease La (LON) substrate-binding domain JO40_01200 PF05362 Lon protease (S16) C-terminal proteolytic domain JO40_01200 PF00004 ATPase family associated with various cellular activities (AAA) JO40_01220 PF13280 WYL domain JO40_01220 PF08279 HTH domain JO40_01250 PF00691 OmpA family JO40_01255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_01255 PF10371 Domain of unknown function JO40_01255 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JO40_01255 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JO40_01255 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JO40_01260 PF02872 5'-nucleotidase, C-terminal domain JO40_01260 PF00149 Calcineurin-like phosphoesterase JO40_01280 PF00860 Permease family JO40_01310 PF00113 Enolase, C-terminal TIM barrel domain JO40_01310 PF03952 Enolase, N-terminal domain JO40_01315 PF13302 Acetyltransferase (GNAT) domain JO40_01320 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JO40_01320 PF01189 16S rRNA methyltransferase RsmB/F JO40_01320 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JO40_01325 PF04298 Putative neutral zinc metallopeptidase JO40_01340 PF08241 Methyltransferase domain JO40_01370 PF00654 Voltage gated chloride channel JO40_01375 PF08011 PD-(D/E)XK nuclease superfamily JO40_01375 PF09820 Predicted AAA-ATPase JO40_01380 PF10396 GTP-binding protein TrmE N-terminus JO40_01380 PF12631 MnmE helical domain JO40_01380 PF01926 50S ribosome-binding GTPase JO40_01385 PF01569 PAP2 superfamily JO40_01395 PF14353 CpXC protein JO40_01410 PF00501 AMP-binding enzyme JO40_01415 PF17762 HTH domain found in ParB protein JO40_01415 PF02195 ParB-like nuclease domain JO40_01430 PF01551 Peptidase family M23 JO40_01430 PF08525 Opacity-associated protein A N-terminal motif JO40_01430 PF01476 LysM domain JO40_01435 PF17768 RecJ OB domain JO40_01435 PF02272 DHHA1 domain JO40_01435 PF01368 DHH family JO40_01435 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JO40_01440 PF02885 Glycosyl transferase family, helical bundle domain JO40_01440 PF00591 Glycosyl transferase family, a/b domain JO40_01440 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JO40_01445 PF17827 PrmC N-terminal domain JO40_01445 PF05175 Methyltransferase small domain JO40_01450 PF03462 PCRF domain JO40_01450 PF00472 RF-1 domain JO40_01455 PF00696 Amino acid kinase family JO40_01460 PF01554 MatE JO40_01470 PF01165 Ribosomal protein S21 JO40_01485 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO40_01490 PF01134 Glucose inhibited division protein A JO40_01490 PF13932 GidA associated domain JO40_01495 PF00580 UvrD/REP helicase N-terminal domain JO40_01495 PF13361 UvrD-like helicase C-terminal domain JO40_01515 PF00158 Sigma-54 interaction domain JO40_01515 PF01590 GAF domain JO40_01565 PF03167 Uracil DNA glycosylase superfamily JO40_01570 PF00271 Helicase conserved C-terminal domain JO40_01570 PF00270 DEAD/DEAH box helicase JO40_01570 PF17764 3′ DNA-binding domain (3′BD) JO40_01570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JO40_01570 PF18074 Primosomal protein N C-terminal domain JO40_01575 PF01687 Riboflavin kinase JO40_01575 PF06574 FAD synthetase JO40_01580 PF00312 Ribosomal protein S15 JO40_01585 PF00575 S1 RNA binding domain JO40_01585 PF01138 3' exoribonuclease family, domain 1 JO40_01585 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JO40_01585 PF03725 3' exoribonuclease family, domain 2 JO40_01585 PF00013 KH domain JO40_01590 PF00692 dUTPase JO40_01605 PF00849 RNA pseudouridylate synthase JO40_01605 PF01479 S4 domain JO40_01610 PF00155 Aminotransferase class I and II JO40_01640 PF00664 ABC transporter transmembrane region JO40_01640 PF00005 ABC transporter JO40_01655 PF00291 Pyridoxal-phosphate dependent enzyme JO40_01655 PF14821 Threonine synthase N terminus JO40_01660 PF02559 CarD-like/TRCF domain JO40_01665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JO40_01665 PF02542 YgbB family JO40_01670 PF02542 YgbB family JO40_01695 PF08544 GHMP kinases C terminal JO40_01695 PF10509 Galactokinase galactose-binding signature JO40_01700 PF00795 Carbon-nitrogen hydrolase JO40_01705 PF00595 PDZ domain JO40_01715 PF00072 Response regulator receiver domain JO40_01735 PF02403 Seryl-tRNA synthetase N-terminal domain JO40_01735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_01750 PF00271 Helicase conserved C-terminal domain JO40_01750 PF00270 DEAD/DEAH box helicase JO40_01750 PF09369 Domain of unknown function (DUF1998) JO40_01765 PF06418 CTP synthase N-terminus JO40_01765 PF00117 Glutamine amidotransferase class-I JO40_01795 PF01168 Alanine racemase, N-terminal domain JO40_01820 PF00005 ABC transporter JO40_01820 PF13732 Domain of unknown function (DUF4162) JO40_01835 PF01145 SPFH domain / Band 7 family JO40_01840 PF01145 SPFH domain / Band 7 family JO40_01855 PF00005 ABC transporter JO40_01855 PF00664 ABC transporter transmembrane region JO40_01860 PF00005 ABC transporter JO40_01865 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JO40_01865 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JO40_01885 PF01812 5-formyltetrahydrofolate cyclo-ligase family JO40_01895 PF00830 Ribosomal L28 family JO40_01905 PF00005 ABC transporter JO40_01905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_01925 PF00528 Binding-protein-dependent transport system inner membrane component JO40_01935 PF04072 Leucine carboxyl methyltransferase JO40_01940 PF02508 Rnf-Nqr subunit, membrane protein JO40_01945 PF02508 Rnf-Nqr subunit, membrane protein JO40_01955 PF03116 NQR2, RnfD, RnfE family JO40_01960 PF10531 SLBB domain JO40_01960 PF13237 4Fe-4S dicluster domain JO40_01960 PF13375 RnfC Barrel sandwich hybrid domain JO40_01960 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JO40_01970 PF13519 von Willebrand factor type A domain JO40_01985 PF00391 PEP-utilising enzyme, mobile domain JO40_01985 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_01995 PF16314 Domain of unknown function (DUF4954) JO40_02010 PF02743 Cache domain JO40_02010 PF00672 HAMP domain JO40_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02020 PF00572 Ribosomal protein L13 JO40_02025 PF00380 Ribosomal protein S9/S16 JO40_02030 PF02631 RecX family JO40_02035 PF00196 Bacterial regulatory proteins, luxR family JO40_02035 PF00072 Response regulator receiver domain JO40_02060 PF01479 S4 domain JO40_02060 PF00849 RNA pseudouridylate synthase JO40_02065 PF00579 tRNA synthetases class I (W and Y) JO40_02070 PF00224 Pyruvate kinase, barrel domain JO40_02070 PF02887 Pyruvate kinase, alpha/beta domain JO40_02070 PF00391 PEP-utilising enzyme, mobile domain JO40_02115 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JO40_02115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JO40_02135 PF01430 Hsp33 protein JO40_02140 PF02570 Precorrin-8X methylmutase JO40_02145 PF13649 Methyltransferase domain JO40_02155 PF03009 Glycerophosphoryl diester phosphodiesterase family JO40_02165 PF00708 Acylphosphatase JO40_02190 PF01196 Ribosomal protein L17 JO40_02195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JO40_02195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JO40_02195 PF01000 RNA polymerase Rpb3/RpoA insert domain JO40_02200 PF00411 Ribosomal protein S11 JO40_02205 PF00416 Ribosomal protein S13/S18 JO40_02210 PF00344 SecY translocase JO40_02215 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JO40_02220 PF00327 Ribosomal protein L30p/L7e JO40_02225 PF03719 Ribosomal protein S5, C-terminal domain JO40_02225 PF00333 Ribosomal protein S5, N-terminal domain JO40_02230 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JO40_02235 PF00347 Ribosomal protein L6 JO40_02240 PF00410 Ribosomal protein S8 JO40_02245 PF00281 Ribosomal protein L5 JO40_02245 PF00673 ribosomal L5P family C-terminus JO40_02250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JO40_02250 PF00467 KOW motif JO40_02255 PF00238 Ribosomal protein L14p/L23e JO40_02260 PF00366 Ribosomal protein S17 JO40_02265 PF00831 Ribosomal L29 protein JO40_02270 PF00252 Ribosomal protein L16p/L10e JO40_02275 PF07650 KH domain JO40_02275 PF00189 Ribosomal protein S3, C-terminal domain JO40_02280 PF00237 Ribosomal protein L22p/L17e JO40_02285 PF00203 Ribosomal protein S19 JO40_02290 PF03947 Ribosomal Proteins L2, C-terminal domain JO40_02290 PF00181 Ribosomal Proteins L2, RNA binding domain JO40_02295 PF00276 Ribosomal protein L23 JO40_02300 PF00573 Ribosomal protein L4/L1 family JO40_02305 PF00297 Ribosomal protein L3 JO40_02310 PF00338 Ribosomal protein S10p/S20e JO40_02315 PF03143 Elongation factor Tu C-terminal domain JO40_02315 PF03144 Elongation factor Tu domain 2 JO40_02315 PF00009 Elongation factor Tu GTP binding domain JO40_02340 PF17191 RecG wedge domain JO40_02340 PF00271 Helicase conserved C-terminal domain JO40_02340 PF00270 DEAD/DEAH box helicase JO40_02365 PF03577 Peptidase family C69 JO40_02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02370 PF00672 HAMP domain JO40_02370 PF12729 Four helix bundle sensory module for signal transduction JO40_02375 PF12169 DNA polymerase III subunits gamma and tau domain III JO40_02380 PF00849 RNA pseudouridylate synthase JO40_02390 PF01926 50S ribosome-binding GTPase JO40_02395 PF00342 Phosphoglucose isomerase JO40_02400 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO40_02405 PF00581 Rhodanese-like domain JO40_02410 PF03880 DbpA RNA binding domain JO40_02440 PF03390 2-hydroxycarboxylate transporter family JO40_02465 PF00005 ABC transporter JO40_02470 PF01458 Uncharacterized protein family (UPF0051) JO40_02480 PF03030 Inorganic H+ pyrophosphatase JO40_02500 PF00072 Response regulator receiver domain JO40_02500 PF01339 CheB methylesterase JO40_02505 PF01739 CheR methyltransferase, SAM binding domain JO40_02505 PF03705 CheR methyltransferase, all-alpha domain JO40_02520 PF12399 Branched-chain amino acid ATP-binding cassette transporter JO40_02520 PF00005 ABC transporter JO40_02525 PF01195 Peptidyl-tRNA hydrolase JO40_02535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JO40_02540 PF02743 Cache domain JO40_02540 PF00672 HAMP domain JO40_02540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02545 PF00528 Binding-protein-dependent transport system inner membrane component JO40_02550 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_02550 PF00528 Binding-protein-dependent transport system inner membrane component JO40_02555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_02555 PF00005 ABC transporter JO40_02560 PF00005 ABC transporter JO40_02560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_02565 PF16916 Dimerisation domain of Zinc Transporter JO40_02565 PF01545 Cation efflux family JO40_02570 PF02557 D-alanyl-D-alanine carboxypeptidase JO40_02590 PF00226 DnaJ domain JO40_02590 PF01556 DnaJ C terminal domain JO40_02590 PF00684 DnaJ central domain JO40_02595 PF00012 Hsp70 protein JO40_02600 PF01025 GrpE JO40_02605 PF03781 Sulfatase-modifying factor enzyme 1 JO40_02615 PF03781 Sulfatase-modifying factor enzyme 1 JO40_02620 PF03781 Sulfatase-modifying factor enzyme 1 JO40_02630 PF00005 ABC transporter JO40_02635 PF02571 Precorrin-6x reductase CbiJ/CobK JO40_02640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_02640 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JO40_02645 PF08011 PD-(D/E)XK nuclease superfamily JO40_02645 PF09820 Predicted AAA-ATPase JO40_02660 PF01554 MatE JO40_02670 PF00672 HAMP domain JO40_02670 PF02743 Cache domain JO40_02670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_02675 PF01890 Cobalamin synthesis G C-terminus JO40_02675 PF11760 Cobalamin synthesis G N-terminal JO40_02675 PF11761 Cobalamin biosynthesis central region JO40_02680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_02685 PF13614 AAA domain JO40_02710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_02710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JO40_02715 PF00698 Acyl transferase domain JO40_02735 PF02384 N-6 DNA Methylase JO40_02745 PF12241 Trans-2-enoyl-CoA reductase catalytic region JO40_02745 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JO40_02745 PF07055 Enoyl reductase FAD binding domain JO40_02755 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JO40_02755 PF17191 RecG wedge domain JO40_02755 PF00270 DEAD/DEAH box helicase JO40_02770 PF00364 Biotin-requiring enzyme JO40_02775 PF02785 Biotin carboxylase C-terminal domain JO40_02775 PF00289 Biotin carboxylase, N-terminal domain JO40_02775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JO40_02780 PF01039 Carboxyl transferase domain JO40_02785 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JO40_02790 PF00221 Aromatic amino acid lyase JO40_02810 PF17863 AAA lid domain JO40_02810 PF07726 ATPase family associated with various cellular activities (AAA) JO40_02855 PF01425 Amidase JO40_02860 PF02934 GatB/GatE catalytic domain JO40_02860 PF02637 GatB domain JO40_02960 PF00561 alpha/beta hydrolase fold JO40_03010 PF00005 ABC transporter JO40_03145 PF01381 Helix-turn-helix JO40_03155 PF07804 HipA-like C-terminal domain JO40_03190 PF02525 Flavodoxin-like fold JO40_03210 PF00664 ABC transporter transmembrane region JO40_03210 PF00005 ABC transporter JO40_03215 PF08021 Siderophore-interacting FAD-binding domain JO40_03215 PF04954 Siderophore-interacting protein JO40_03215 PF00664 ABC transporter transmembrane region JO40_03215 PF00005 ABC transporter JO40_03260 PF00561 alpha/beta hydrolase fold JO40_03280 PF00664 ABC transporter transmembrane region JO40_03280 PF00005 ABC transporter JO40_03285 PF00664 ABC transporter transmembrane region JO40_03285 PF00005 ABC transporter JO40_03290 PF01515 Phosphate acetyl/butaryl transferase JO40_03295 PF13174 Tetratricopeptide repeat JO40_03295 PF13176 Tetratricopeptide repeat JO40_03300 PF07733 Bacterial DNA polymerase III alpha NTPase domain JO40_03300 PF14579 Helix-hairpin-helix motif JO40_03300 PF02811 PHP domain JO40_03300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JO40_03310 PF17239 Family of unknown function (DUF5312) JO40_03325 PF01432 Peptidase family M3 JO40_03325 PF08439 Oligopeptidase F JO40_03335 PF12728 Helix-turn-helix domain JO40_03335 PF02661 Fic/DOC family JO40_03345 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JO40_03345 PF01266 FAD dependent oxidoreductase JO40_03350 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_03350 PF04324 BFD-like [2Fe-2S] binding domain JO40_03365 PF00072 Response regulator receiver domain JO40_03365 PF00486 Transcriptional regulatory protein, C terminal JO40_03380 PF00005 ABC transporter JO40_03390 PF03099 Biotin/lipoate A/B protein ligase family JO40_03390 PF10437 Bacterial lipoate protein ligase C-terminus JO40_03400 PF00005 ABC transporter JO40_03405 PF00155 Aminotransferase class I and II JO40_03405 PF00392 Bacterial regulatory proteins, gntR family JO40_03440 PF06180 Cobalt chelatase (CbiK) JO40_03445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_03450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JO40_03450 PF07685 CobB/CobQ-like glutamine amidotransferase domain JO40_03455 PF00464 Serine hydroxymethyltransferase JO40_03465 PF00478 IMP dehydrogenase / GMP reductase domain JO40_03465 PF00571 CBS domain JO40_03470 PF01066 CDP-alcohol phosphatidyltransferase JO40_03475 PF00953 Glycosyl transferase family 4 JO40_03505 PF00291 Pyridoxal-phosphate dependent enzyme JO40_03550 PF04468 PSP1 C-terminal conserved region JO40_03555 PF03885 Protein of unknown function (DUF327) JO40_03565 PF01551 Peptidase family M23 JO40_03565 PF04225 Opacity-associated protein A LysM-like domain JO40_03570 PF01409 tRNA synthetases class II core domain (F) JO40_03590 PF12683 Protein of unknown function (DUF3798) JO40_03595 PF00005 ABC transporter JO40_03615 PF09820 Predicted AAA-ATPase JO40_03615 PF08011 PD-(D/E)XK nuclease superfamily JO40_03620 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_03620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JO40_03625 PF00175 Oxidoreductase NAD-binding domain JO40_03625 PF00970 Oxidoreductase FAD-binding domain JO40_03625 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JO40_03635 PF11849 Domain of unknown function (DUF3369) JO40_03655 PF00133 tRNA synthetases class I (I, L, M and V) JO40_03655 PF08264 Anticodon-binding domain of tRNA JO40_03665 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JO40_03705 PF17758 Proteasomal ATPase OB N-terminal domain JO40_03705 PF00004 ATPase family associated with various cellular activities (AAA) JO40_03705 PF16450 Proteasomal ATPase OB C-terminal domain JO40_03725 PF02661 Fic/DOC family JO40_03725 PF13784 Fic/DOC family N-terminal JO40_03740 PF00005 ABC transporter JO40_03745 PF00005 ABC transporter JO40_03745 PF00664 ABC transporter transmembrane region JO40_03755 PF03852 DNA mismatch endonuclease Vsr JO40_03765 PF09565 NgoFVII restriction endonuclease JO40_03785 PF00005 ABC transporter JO40_03785 PF00664 ABC transporter transmembrane region JO40_03790 PF00440 Bacterial regulatory proteins, tetR family JO40_03790 PF17932 Tetracyclin repressor-like, C-terminal domain JO40_03800 PF04343 Protein of unknown function, DUF488 JO40_03805 PF01613 Flavin reductase like domain JO40_03810 PF01212 Beta-eliminating lyase JO40_03815 PF00771 FHIPEP family JO40_03825 PF01311 Bacterial export proteins, family 1 JO40_03830 PF01313 Bacterial export proteins, family 3 JO40_03860 PF01979 Amidohydrolase family JO40_03875 PF08011 PD-(D/E)XK nuclease superfamily JO40_03875 PF09820 Predicted AAA-ATPase JO40_03900 PF00672 HAMP domain JO40_03900 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_03900 PF02743 Cache domain JO40_03905 PF03466 LysR substrate binding domain JO40_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JO40_03915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_03920 PF00005 ABC transporter JO40_03920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_03925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_03925 PF00005 ABC transporter JO40_03930 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_03930 PF00528 Binding-protein-dependent transport system inner membrane component JO40_03935 PF00528 Binding-protein-dependent transport system inner membrane component JO40_03945 PF00107 Zinc-binding dehydrogenase JO40_03945 PF08240 Alcohol dehydrogenase GroES-like domain JO40_03950 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO40_03950 PF07683 Cobalamin synthesis protein cobW C-terminal domain JO40_03955 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO40_03970 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO40_03990 PF07837 Formiminotransferase domain, N-terminal subdomain JO40_03990 PF02971 Formiminotransferase domain JO40_03995 PF01547 Bacterial extracellular solute-binding protein JO40_04005 PF08402 TOBE domain JO40_04005 PF00005 ABC transporter JO40_04015 PF01546 Peptidase family M20/M25/M40 JO40_04015 PF07687 Peptidase dimerisation domain JO40_04020 PF07730 Histidine kinase JO40_04025 PF00196 Bacterial regulatory proteins, luxR family JO40_04025 PF00072 Response regulator receiver domain JO40_04030 PF00027 Cyclic nucleotide-binding domain JO40_04030 PF07885 Ion channel JO40_04035 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_04035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_04095 PF00255 Glutathione peroxidase JO40_04115 PF01381 Helix-turn-helix JO40_04120 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB JO40_04130 PF03023 Lipid II flippase MurJ JO40_04135 PF03477 ATP cone domain JO40_04135 PF00317 Ribonucleotide reductase, all-alpha domain JO40_04135 PF02867 Ribonucleotide reductase, barrel domain JO40_04140 PF00274 Fructose-bisphosphate aldolase class-I JO40_04170 PF06071 Protein of unknown function (DUF933) JO40_04170 PF01926 50S ribosome-binding GTPase JO40_04175 PF01343 Peptidase family S49 JO40_04180 PF01208 Uroporphyrinogen decarboxylase (URO-D) JO40_04200 PF02310 B12 binding domain JO40_04200 PF02607 B12 binding domain JO40_04205 PF14572 Phosphoribosyl synthetase-associated domain JO40_04205 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JO40_04210 PF00664 ABC transporter transmembrane region JO40_04210 PF00005 ABC transporter JO40_04215 PF00005 ABC transporter JO40_04215 PF00664 ABC transporter transmembrane region JO40_04220 PF00672 HAMP domain JO40_04220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04220 PF02743 Cache domain JO40_04225 PF00753 Metallo-beta-lactamase superfamily JO40_04230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JO40_04240 PF00268 Ribonucleotide reductase, small chain JO40_04260 PF03616 Sodium/glutamate symporter JO40_04265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04265 PF00672 HAMP domain JO40_04270 PF02743 Cache domain JO40_04270 PF00672 HAMP domain JO40_04270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04275 PF01048 Phosphorylase superfamily JO40_04325 PF00990 Diguanylate cyclase, GGDEF domain JO40_04325 PF08448 PAS fold JO40_04325 PF00563 EAL domain JO40_04330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO40_04330 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JO40_04330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO40_04330 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JO40_04335 PF00375 Sodium:dicarboxylate symporter family JO40_04350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_04355 PF02504 Fatty acid synthesis protein JO40_04365 PF17912 MalK OB fold domain JO40_04365 PF03459 TOBE domain JO40_04365 PF00005 ABC transporter JO40_04370 PF00528 Binding-protein-dependent transport system inner membrane component JO40_04375 PF00528 Binding-protein-dependent transport system inner membrane component JO40_04385 PF00013 KH domain JO40_04385 PF12072 Domain of unknown function (DUF3552) JO40_04385 PF01966 HD domain JO40_04395 PF00149 Calcineurin-like phosphoesterase JO40_04395 PF12320 Type 5 capsule protein repressor C-terminal domain JO40_04400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04400 PF00672 HAMP domain JO40_04400 PF17202 Single cache domain 3 JO40_04405 PF00392 Bacterial regulatory proteins, gntR family JO40_04405 PF07702 UTRA domain JO40_04410 PF00005 ABC transporter JO40_04420 PF08011 PD-(D/E)XK nuclease superfamily JO40_04420 PF09820 Predicted AAA-ATPase JO40_04430 PF00258 Flavodoxin JO40_04445 PF00883 Cytosol aminopeptidase family, catalytic domain JO40_04445 PF02789 Cytosol aminopeptidase family, N-terminal domain JO40_04450 PF01661 Macro domain JO40_04455 PF00712 DNA polymerase III beta subunit, N-terminal domain JO40_04455 PF02767 DNA polymerase III beta subunit, central domain JO40_04455 PF02768 DNA polymerase III beta subunit, C-terminal domain JO40_04460 PF02463 RecF/RecN/SMC N terminal domain JO40_04530 PF05258 Dna[CI] antecedent, DciA JO40_04535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JO40_04535 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JO40_04575 PF07238 PilZ domain JO40_04590 PF00528 Binding-protein-dependent transport system inner membrane component JO40_04595 PF12557 Cob(I)alamin adenosyltransferase N terminal JO40_04595 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JO40_04600 PF03600 Citrate transporter JO40_04610 PF00176 SNF2 family N-terminal domain JO40_04610 PF12419 SNF2 Helicase protein JO40_04610 PF00271 Helicase conserved C-terminal domain JO40_04615 PF08011 PD-(D/E)XK nuclease superfamily JO40_04615 PF09820 Predicted AAA-ATPase JO40_04640 PF02661 Fic/DOC family JO40_04645 PF00892 EamA-like transporter family JO40_04650 PF01925 Sulfite exporter TauE/SafE JO40_04655 PF00962 Adenosine/AMP deaminase JO40_04670 PF00528 Binding-protein-dependent transport system inner membrane component JO40_04675 PF08402 TOBE domain JO40_04675 PF00005 ABC transporter JO40_04680 PF02743 Cache domain JO40_04680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_04680 PF00672 HAMP domain JO40_04695 PF01470 Pyroglutamyl peptidase JO40_04700 PF08011 PD-(D/E)XK nuclease superfamily JO40_04700 PF09820 Predicted AAA-ATPase JO40_04705 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JO40_04705 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JO40_04705 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JO40_04725 PF00009 Elongation factor Tu GTP binding domain JO40_04725 PF03764 Elongation factor G, domain IV JO40_04725 PF14492 Elongation Factor G, domain II JO40_04725 PF00679 Elongation factor G C-terminus JO40_04725 PF03144 Elongation factor Tu domain 2 JO40_04730 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JO40_04740 PF02080 TrkA-C domain JO40_04740 PF02254 TrkA-N domain JO40_04745 PF03989 DNA gyrase C-terminal domain, beta-propeller JO40_04745 PF00521 DNA gyrase/topoisomerase IV, subunit A JO40_04765 PF01680 SOR/SNZ family JO40_04775 PF01171 PP-loop family JO40_04790 PF04452 RNA methyltransferase JO40_04805 PF02386 Cation transport protein JO40_04810 PF02080 TrkA-C domain JO40_04810 PF02254 TrkA-N domain JO40_04820 PF01850 PIN domain JO40_04825 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JO40_04830 PF00005 ABC transporter JO40_04835 PF17863 AAA lid domain JO40_04835 PF07726 ATPase family associated with various cellular activities (AAA) JO40_04840 PF00571 CBS domain JO40_04840 PF01595 Cyclin M transmembrane N-terminal domain JO40_04840 PF03471 Transporter associated domain JO40_04845 PF01595 Cyclin M transmembrane N-terminal domain JO40_04845 PF03471 Transporter associated domain JO40_04845 PF00571 CBS domain JO40_04860 PF00270 DEAD/DEAH box helicase JO40_04860 PF16124 RecQ zinc-binding JO40_04860 PF00271 Helicase conserved C-terminal domain JO40_04860 PF09382 RQC domain JO40_04860 PF00570 HRDC domain JO40_04865 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 JO40_04865 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 JO40_04865 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 JO40_04865 PF13395 HNH endonuclease JO40_04870 PF01867 CRISPR associated protein Cas1 JO40_04875 PF09827 CRISPR associated protein Cas2 JO40_04890 PF00005 ABC transporter JO40_04890 PF00664 ABC transporter transmembrane region JO40_04915 PF02875 Mur ligase family, glutamate ligase domain JO40_04915 PF08245 Mur ligase middle domain JO40_04935 PF00005 ABC transporter JO40_04935 PF03412 Peptidase C39 family JO40_04935 PF00664 ABC transporter transmembrane region JO40_04940 PF00005 ABC transporter JO40_04940 PF00664 ABC transporter transmembrane region JO40_04940 PF03412 Peptidase C39 family JO40_04945 PF13439 Glycosyltransferase Family 4 JO40_04945 PF00534 Glycosyl transferases group 1 JO40_04950 PF08402 TOBE domain JO40_04950 PF00005 ABC transporter JO40_04955 PF00528 Binding-protein-dependent transport system inner membrane component JO40_04960 PF00990 Diguanylate cyclase, GGDEF domain JO40_04965 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_04965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_04975 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JO40_04975 PF01565 FAD binding domain JO40_04980 PF01406 tRNA synthetases class I (C) catalytic domain JO40_04980 PF09190 DALR domain JO40_04995 PF01841 Transglutaminase-like superfamily JO40_05000 PF02386 Cation transport protein JO40_05005 PF02254 TrkA-N domain JO40_05005 PF02080 TrkA-C domain JO40_05010 PF12705 PD-(D/E)XK nuclease superfamily JO40_05060 PF08032 RNA 2'-O ribose methyltransferase substrate binding JO40_05060 PF00588 SpoU rRNA Methylase family JO40_05095 PF00158 Sigma-54 interaction domain JO40_05095 PF02954 Bacterial regulatory protein, Fis family JO40_05095 PF13185 GAF domain JO40_05115 PF00834 Ribulose-phosphate 3 epimerase family JO40_05125 PF02223 Thymidylate kinase JO40_05135 PF07244 Surface antigen variable number repeat JO40_05135 PF01103 Surface antigen JO40_05145 PF05192 MutS domain III JO40_05145 PF05190 MutS family domain IV JO40_05145 PF01624 MutS domain I JO40_05145 PF00488 MutS domain V JO40_05145 PF05188 MutS domain II JO40_05155 PF00005 ABC transporter JO40_05170 PF00672 HAMP domain JO40_05170 PF02743 Cache domain JO40_05170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_05210 PF08011 PD-(D/E)XK nuclease superfamily JO40_05210 PF09820 Predicted AAA-ATPase JO40_05215 PF03063 Prismane/CO dehydrogenase family JO40_05230 PF02237 Biotin protein ligase C terminal domain JO40_05230 PF08279 HTH domain JO40_05230 PF03099 Biotin/lipoate A/B protein ligase family JO40_05235 PF00501 AMP-binding enzyme JO40_05235 PF13193 AMP-binding enzyme C-terminal domain JO40_05240 PF00109 Beta-ketoacyl synthase, N-terminal domain JO40_05240 PF02801 Beta-ketoacyl synthase, C-terminal domain JO40_05260 PF12102 Domain of unknown function (DUF3578) JO40_05260 PF07728 AAA domain (dynein-related subfamily) JO40_05270 PF07676 WD40-like Beta Propeller Repeat JO40_05270 PF00326 Prolyl oligopeptidase family JO40_05275 PF00128 Alpha amylase, catalytic domain JO40_05275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JO40_05285 PF00266 Aminotransferase class-V JO40_05290 PF01761 3-dehydroquinate synthase JO40_05295 PF01048 Phosphorylase superfamily JO40_05310 PF00664 ABC transporter transmembrane region JO40_05310 PF00005 ABC transporter JO40_05320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_05335 PF00749 tRNA synthetases class I (E and Q), catalytic domain JO40_05345 PF02595 Glycerate kinase family JO40_05350 PF00403 Heavy-metal-associated domain JO40_05360 PF00293 NUDIX domain JO40_05370 PF00210 Ferritin-like domain JO40_05375 PF10417 C-terminal domain of 1-Cys peroxiredoxin JO40_05375 PF00578 AhpC/TSA family JO40_05380 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JO40_05380 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JO40_05395 PF00004 ATPase family associated with various cellular activities (AAA) JO40_05395 PF12002 MgsA AAA+ ATPase C terminal JO40_05395 PF16193 AAA C-terminal domain JO40_05400 PF05343 M42 glutamyl aminopeptidase JO40_05415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_05415 PF03129 Anticodon binding domain JO40_05435 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO40_05435 PF00933 Glycosyl hydrolase family 3 N terminal domain JO40_05460 PF00005 ABC transporter JO40_05465 PF00005 ABC transporter JO40_05545 PF00005 ABC transporter JO40_05600 PF13419 Haloacid dehalogenase-like hydrolase JO40_05620 PF04954 Siderophore-interacting protein JO40_05620 PF08021 Siderophore-interacting FAD-binding domain JO40_05620 PF00005 ABC transporter JO40_05620 PF00664 ABC transporter transmembrane region JO40_05655 PF00583 Acetyltransferase (GNAT) family JO40_05695 PF00005 ABC transporter JO40_05710 PF00440 Bacterial regulatory proteins, tetR family JO40_05730 PF01661 Macro domain JO40_05750 PF00990 Diguanylate cyclase, GGDEF domain JO40_05750 PF00072 Response regulator receiver domain JO40_05765 PF01207 Dihydrouridine synthase (Dus) JO40_05800 PF04542 Sigma-70 region 2 JO40_05800 PF04539 Sigma-70 region 3 JO40_05800 PF04545 Sigma-70, region 4 JO40_05810 PF10609 NUBPL iron-transfer P-loop NTPase JO40_05815 PF00448 SRP54-type protein, GTPase domain JO40_05820 PF00155 Aminotransferase class I and II JO40_05855 PF03963 Flagellar hook capping protein - N-terminal region JO40_05860 PF07559 Flagellar basal body protein FlaE JO40_05860 PF00460 Flagella basal body rod protein JO40_05860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_05870 PF01618 MotA/TolQ/ExbB proton channel family JO40_05875 PF13677 Membrane MotB of proton-channel complex MotA/MotB JO40_05875 PF00691 OmpA family JO40_05880 PF03748 Flagellar basal body-associated protein FliL JO40_05885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO40_05885 PF02154 Flagellar motor switch protein FliM JO40_05890 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO40_05890 PF04509 CheC-like family JO40_05900 PF00813 FliP family JO40_05945 PF02423 Ornithine cyclodeaminase/mu-crystallin family JO40_05950 PF10145 Phage-related minor tail protein JO40_05950 PF01551 Peptidase family M23 JO40_05950 PF01464 Transglycosylase SLT domain JO40_05970 PF13167 GTP-binding GTPase N-terminal JO40_05970 PF01926 50S ribosome-binding GTPase JO40_05970 PF16360 GTP-binding GTPase Middle Region JO40_05985 PF01207 Dihydrouridine synthase (Dus) JO40_05990 PF01026 TatD related DNase JO40_06000 PF00990 Diguanylate cyclase, GGDEF domain JO40_06005 PF00990 Diguanylate cyclase, GGDEF domain JO40_06005 PF00072 Response regulator receiver domain JO40_06010 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JO40_06010 PF17191 RecG wedge domain JO40_06010 PF00270 DEAD/DEAH box helicase JO40_06025 PF01751 Toprim domain JO40_06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_06025 PF00204 DNA gyrase B JO40_06025 PF00986 DNA gyrase B subunit, carboxyl terminus JO40_06030 PF11638 DnaA N-terminal domain JO40_06030 PF08299 Bacterial dnaA protein helix-turn-helix JO40_06030 PF00308 Bacterial dnaA protein JO40_06035 PF01434 Peptidase family M41 JO40_06035 PF17862 AAA+ lid domain JO40_06035 PF00004 ATPase family associated with various cellular activities (AAA) JO40_06070 PF03781 Sulfatase-modifying factor enzyme 1 JO40_06080 PF00005 ABC transporter JO40_06080 PF02687 FtsX-like permease family JO40_06080 PF12704 MacB-like periplasmic core domain JO40_06085 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO40_06105 PF01641 SelR domain JO40_06105 PF01625 Peptide methionine sulfoxide reductase JO40_06125 PF02719 Polysaccharide biosynthesis protein JO40_06140 PF02517 CPBP intramembrane metalloprotease JO40_06150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO40_06160 PF00111 2Fe-2S iron-sulfur cluster binding domain JO40_06160 PF01799 [2Fe-2S] binding domain JO40_06215 PF00171 Aldehyde dehydrogenase family JO40_06225 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_06230 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_06235 PF09338 Glycine/sarcosine/betaine reductase component B subunits JO40_06240 PF01791 DeoC/LacD family aldolase JO40_06245 PF08240 Alcohol dehydrogenase GroES-like domain JO40_06245 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JO40_06250 PF00324 Amino acid permease JO40_06255 PF01687 Riboflavin kinase JO40_06260 PF05524 PEP-utilising enzyme, N-terminal JO40_06260 PF00391 PEP-utilising enzyme, mobile domain JO40_06260 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_06265 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JO40_06265 PF01926 50S ribosome-binding GTPase JO40_06280 PF00672 HAMP domain JO40_06280 PF02743 Cache domain JO40_06280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_06285 PF12392 Collagenase JO40_06285 PF01136 Peptidase family U32 JO40_06290 PF00005 ABC transporter JO40_06295 PF04539 Sigma-70 region 3 JO40_06295 PF04545 Sigma-70, region 4 JO40_06295 PF00140 Sigma-70 factor, region 1.2 JO40_06295 PF04542 Sigma-70 region 2 JO40_06295 PF03979 Sigma-70 factor, region 1.1 JO40_06305 PF01546 Peptidase family M20/M25/M40 JO40_06305 PF07687 Peptidase dimerisation domain JO40_06310 PF13545 Crp-like helix-turn-helix domain JO40_06310 PF00027 Cyclic nucleotide-binding domain JO40_06325 PF00365 Phosphofructokinase JO40_06360 PF01192 RNA polymerase Rpb6 JO40_06370 PF01435 Peptidase family M48 JO40_06375 PF02743 Cache domain JO40_06375 PF00672 HAMP domain JO40_06375 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_06485 PF02915 Rubrerythrin JO40_06490 PF00270 DEAD/DEAH box helicase JO40_06490 PF09382 RQC domain JO40_06490 PF00271 Helicase conserved C-terminal domain JO40_06490 PF00570 HRDC domain JO40_06490 PF16124 RecQ zinc-binding JO40_06495 PF11967 Recombination protein O N terminal JO40_06495 PF02565 Recombination protein O C terminal JO40_06505 PF01702 Queuine tRNA-ribosyltransferase JO40_06560 PF01791 DeoC/LacD family aldolase JO40_06565 PF00210 Ferritin-like domain JO40_06570 PF00005 ABC transporter JO40_06585 PF07687 Peptidase dimerisation domain JO40_06585 PF01546 Peptidase family M20/M25/M40 JO40_06590 PF00571 CBS domain JO40_06590 PF01769 Divalent cation transporter JO40_06590 PF03448 MgtE intracellular N domain JO40_06600 PF13419 Haloacid dehalogenase-like hydrolase JO40_06605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_06610 PF00085 Thioredoxin JO40_06615 PF04723 Glycine reductase complex selenoprotein A JO40_06620 PF04723 Glycine reductase complex selenoprotein A JO40_06630 PF01032 FecCD transport family JO40_06645 PF13519 von Willebrand factor type A domain JO40_06645 PF17863 AAA lid domain JO40_06645 PF01078 Magnesium chelatase, subunit ChlI JO40_06650 PF17863 AAA lid domain JO40_06650 PF01078 Magnesium chelatase, subunit ChlI JO40_06675 PF11867 Domain of unknown function (DUF3387) JO40_06675 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JO40_06675 PF18766 SWI2/SNF2 ATPase JO40_06685 PF03553 Na+/H+ antiporter family JO40_06690 PF01066 CDP-alcohol phosphatidyltransferase JO40_06695 PF02229 Transcriptional Coactivator p15 (PC4) JO40_06700 PF00075 RNase H JO40_06710 PF02568 Thiamine biosynthesis protein (ThiI) JO40_06710 PF02926 THUMP domain JO40_06735 PF00950 ABC 3 transport family JO40_06740 PF00005 ABC transporter JO40_06750 PF00664 ABC transporter transmembrane region JO40_06750 PF00005 ABC transporter JO40_06755 PF00005 ABC transporter JO40_06755 PF00664 ABC transporter transmembrane region JO40_06785 PF01245 Ribosomal protein L19 JO40_06790 PF01746 tRNA (Guanine-1)-methyltransferase JO40_06795 PF01782 RimM N-terminal domain JO40_06805 PF00886 Ribosomal protein S16 JO40_06810 PF02277 Phosphoribosyltransferase JO40_06825 PF00005 ABC transporter JO40_06825 PF12704 MacB-like periplasmic core domain JO40_06825 PF02687 FtsX-like permease family JO40_06830 PF00005 ABC transporter JO40_06835 PF00849 RNA pseudouridylate synthase JO40_06835 PF01479 S4 domain JO40_06845 PF02616 Segregation and condensation protein ScpA JO40_06850 PF00154 recA bacterial DNA recombination protein JO40_06860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JO40_06860 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_06900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO40_06900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO40_06900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO40_06900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO40_06905 PF02308 MgtC family JO40_06920 PF07669 Eco57I restriction-modification methylase JO40_06925 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JO40_06925 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JO40_06930 PF01554 MatE JO40_06935 PF00672 HAMP domain JO40_06935 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_06935 PF02743 Cache domain JO40_06940 PF00871 Acetokinase family JO40_06965 PF00166 Chaperonin 10 Kd subunit JO40_06970 PF03979 Sigma-70 factor, region 1.1 JO40_06970 PF00140 Sigma-70 factor, region 1.2 JO40_06970 PF04542 Sigma-70 region 2 JO40_06970 PF04539 Sigma-70 region 3 JO40_06970 PF04545 Sigma-70, region 4 JO40_06975 PF01170 Putative RNA methylase family UPF0020 JO40_06975 PF02926 THUMP domain JO40_06980 PF01963 TraB family JO40_06990 PF00877 NlpC/P60 family JO40_06995 PF00501 AMP-binding enzyme JO40_06995 PF13193 AMP-binding enzyme C-terminal domain JO40_07005 PF14492 Elongation Factor G, domain II JO40_07005 PF00679 Elongation factor G C-terminus JO40_07005 PF03144 Elongation factor Tu domain 2 JO40_07005 PF00009 Elongation factor Tu GTP binding domain JO40_07005 PF03764 Elongation factor G, domain IV JO40_07025 PF00892 EamA-like transporter family JO40_07035 PF01613 Flavin reductase like domain JO40_07045 PF08463 EcoEI R protein C-terminal JO40_07045 PF00271 Helicase conserved C-terminal domain JO40_07045 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JO40_07045 PF04851 Type III restriction enzyme, res subunit JO40_07050 PF02384 N-6 DNA Methylase JO40_07050 PF12161 HsdM N-terminal domain JO40_07055 PF05860 haemagglutination activity domain JO40_07055 PF13018 Extended Signal Peptide of Type V secretion system JO40_07055 PF02661 Fic/DOC family JO40_07055 PF03543 Yersinia/Haemophilus virulence surface antigen JO40_07055 PF13332 Hemagglutinin repeat JO40_07060 PF01420 Type I restriction modification DNA specificity domain JO40_07065 PF00589 Phage integrase family JO40_07065 PF02899 Phage integrase, N-terminal SAM-like domain JO40_07070 PF01420 Type I restriction modification DNA specificity domain JO40_07075 PF01420 Type I restriction modification DNA specificity domain JO40_07085 PF00465 Iron-containing alcohol dehydrogenase JO40_07120 PF02567 Phenazine biosynthesis-like protein JO40_07140 PF00248 Aldo/keto reductase family JO40_07190 PF01381 Helix-turn-helix JO40_07195 PF01555 DNA methylase JO40_07200 PF04851 Type III restriction enzyme, res subunit JO40_07205 PF02525 Flavodoxin-like fold JO40_07220 PF02502 Ribose/Galactose Isomerase JO40_07225 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JO40_07225 PF00056 lactate/malate dehydrogenase, NAD binding domain JO40_07230 PF01554 MatE JO40_07235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO40_07235 PF00391 PEP-utilising enzyme, mobile domain JO40_07240 PF08359 YsiA-like protein, C-terminal region JO40_07240 PF00440 Bacterial regulatory proteins, tetR family JO40_07255 PF04055 Radical SAM superfamily JO40_07255 PF18693 TRAM domain JO40_07255 PF00919 Uncharacterized protein family UPF0004 JO40_07275 PF02424 ApbE family JO40_07280 PF01252 Signal peptidase (SPase) II JO40_07285 PF13545 Crp-like helix-turn-helix domain JO40_07285 PF00027 Cyclic nucleotide-binding domain JO40_07300 PF05958 tRNA (Uracil-5-)-methyltransferase JO40_07320 PF02355 Protein export membrane protein JO40_07325 PF02355 Protein export membrane protein JO40_07330 PF02699 Preprotein translocase subunit JO40_07340 PF00436 Single-strand binding protein family JO40_07350 PF01259 SAICAR synthetase JO40_07355 PF00731 AIR carboxylase JO40_07365 PF01636 Phosphotransferase enzyme family JO40_07380 PF08543 Phosphomethylpyrimidine kinase JO40_07390 PF00005 ABC transporter JO40_07420 PF01175 Urocanase Rossmann-like domain JO40_07420 PF17392 Urocanase C-terminal domain JO40_07420 PF17391 Urocanase N-terminal domain JO40_07435 PF00300 Histidine phosphatase superfamily (branch 1) JO40_07440 PF01541 GIY-YIG catalytic domain JO40_07440 PF08459 UvrC Helix-hairpin-helix N-terminal JO40_07440 PF02151 UvrB/uvrC motif JO40_07445 PF08011 PD-(D/E)XK nuclease superfamily JO40_07445 PF09820 Predicted AAA-ATPase JO40_07450 PF03841 L-seryl-tRNA selenium transferase JO40_07450 PF12390 Selenocysteine synthase N terminal JO40_07455 PF01613 Flavin reductase like domain JO40_07470 PF12704 MacB-like periplasmic core domain JO40_07470 PF02687 FtsX-like permease family JO40_07470 PF00005 ABC transporter JO40_07495 PF08668 HDOD domain JO40_07500 PF02146 Sir2 family JO40_07510 PF01416 tRNA pseudouridine synthase JO40_07515 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) JO40_07530 PF01725 Ham1 family JO40_07535 PF02743 Cache domain JO40_07535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_07535 PF00672 HAMP domain JO40_07585 PF00664 ABC transporter transmembrane region JO40_07585 PF00005 ABC transporter JO40_07600 PF03932 CutC family JO40_07625 PF03781 Sulfatase-modifying factor enzyme 1 JO40_07660 PF07075 Protein of unknown function (DUF1343) JO40_07680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JO40_07685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JO40_07685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JO40_07690 PF02978 Signal peptide binding domain JO40_07690 PF02881 SRP54-type protein, helical bundle domain JO40_07690 PF00448 SRP54-type protein, GTPase domain JO40_07695 PF01258 Prokaryotic dksA/traR C4-type zinc finger JO40_07700 PF01176 Translation initiation factor 1A / IF-1 JO40_07705 PF01556 DnaJ C terminal domain JO40_07705 PF00226 DnaJ domain JO40_07705 PF00684 DnaJ central domain JO40_07710 PF00696 Amino acid kinase family JO40_07715 PF00588 SpoU rRNA Methylase family JO40_07730 PF00575 S1 RNA binding domain JO40_07735 PF02954 Bacterial regulatory protein, Fis family JO40_07735 PF00072 Response regulator receiver domain JO40_07735 PF00158 Sigma-54 interaction domain JO40_07755 PF00563 EAL domain JO40_07755 PF00990 Diguanylate cyclase, GGDEF domain JO40_07755 PF03707 Bacterial signalling protein N terminal repeat JO40_07760 PF04055 Radical SAM superfamily JO40_07785 PF01042 Endoribonuclease L-PSP JO40_07795 PF07685 CobB/CobQ-like glutamine amidotransferase domain JO40_07815 PF00005 ABC transporter JO40_07835 PF07730 Histidine kinase JO40_07840 PF02861 Clp amino terminal domain, pathogenicity island component JO40_07840 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_07840 PF17871 AAA lid domain JO40_07840 PF07724 AAA domain (Cdc48 subfamily) JO40_07840 PF00004 ATPase family associated with various cellular activities (AAA) JO40_07865 PF02698 DUF218 domain JO40_07875 PF09285 Elongation factor P, C-terminal JO40_07875 PF01132 Elongation factor P (EF-P) OB domain JO40_07875 PF08207 Elongation factor P (EF-P) KOW-like domain JO40_07890 PF13277 YmdB-like protein JO40_07900 PF11798 IMS family HHH motif JO40_07900 PF00817 impB/mucB/samB family JO40_07900 PF11799 impB/mucB/samB family C-terminal domain JO40_07910 PF00226 DnaJ domain JO40_07910 PF00684 DnaJ central domain JO40_07910 PF01556 DnaJ C terminal domain JO40_07920 PF07009 NusG domain II JO40_07925 PF01734 Patatin-like phospholipase JO40_07930 PF03009 Glycerophosphoryl diester phosphodiesterase family JO40_07935 PF04536 TPM domain JO40_07940 PF04011 LemA family JO40_07945 PF03485 Arginyl tRNA synthetase N terminal domain JO40_07945 PF05746 DALR anticodon binding domain JO40_07945 PF00750 tRNA synthetases class I (R) JO40_07950 PF00156 Phosphoribosyl transferase domain JO40_07955 PF04002 RadC-like JAB domain JO40_07960 PF00768 D-alanyl-D-alanine carboxypeptidase JO40_07960 PF07943 Penicillin-binding protein 5, C-terminal domain JO40_07970 PF01180 Dihydroorotate dehydrogenase JO40_07975 PF01226 Formate/nitrite transporter JO40_07980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JO40_07980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JO40_07985 PF00156 Phosphoribosyl transferase domain JO40_07995 PF00700 Bacterial flagellin C-terminal helical region JO40_07995 PF00669 Bacterial flagellin N-terminal helical region JO40_08000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_08000 PF00460 Flagella basal body rod protein JO40_08005 PF00460 Flagella basal body rod protein JO40_08005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_08010 PF10135 Rod binding protein JO40_08015 PF01139 tRNA-splicing ligase RtcB JO40_08080 PF03412 Peptidase C39 family JO40_08080 PF00005 ABC transporter JO40_08080 PF00664 ABC transporter transmembrane region JO40_08090 PF00664 ABC transporter transmembrane region JO40_08090 PF00005 ABC transporter JO40_08095 PF00664 ABC transporter transmembrane region JO40_08095 PF00005 ABC transporter JO40_08115 PF08361 MAATS-type transcriptional repressor, C-terminal region JO40_08115 PF00440 Bacterial regulatory proteins, tetR family JO40_08120 PF04954 Siderophore-interacting protein JO40_08120 PF08021 Siderophore-interacting FAD-binding domain JO40_08120 PF00005 ABC transporter JO40_08120 PF00664 ABC transporter transmembrane region JO40_08125 PF00664 ABC transporter transmembrane region JO40_08125 PF00005 ABC transporter JO40_08130 PF00005 ABC transporter JO40_08145 PF09820 Predicted AAA-ATPase JO40_08145 PF08011 PD-(D/E)XK nuclease superfamily JO40_08165 PF07977 FabA-like domain JO40_08180 PF01225 Mur ligase family, catalytic domain JO40_08180 PF02875 Mur ligase family, glutamate ligase domain JO40_08180 PF08245 Mur ligase middle domain JO40_08205 PF01973 Protein of unknown function DUF115 JO40_08210 PF00005 ABC transporter JO40_08215 PF00005 ABC transporter JO40_08235 PF01546 Peptidase family M20/M25/M40 JO40_08235 PF07687 Peptidase dimerisation domain JO40_08245 PF01297 Zinc-uptake complex component A periplasmic JO40_08265 PF03129 Anticodon binding domain JO40_08265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_08265 PF04073 Aminoacyl-tRNA editing domain JO40_08270 PF10502 Signal peptidase, peptidase S26 JO40_08280 PF18610 Periplasmic binding protein domain JO40_08280 PF13407 Periplasmic binding protein domain JO40_08305 PF02547 Queuosine biosynthesis protein JO40_08310 PF12796 Ankyrin repeats (3 copies) JO40_08315 PF01871 AMMECR1 JO40_08315 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JO40_08320 PF08011 PD-(D/E)XK nuclease superfamily JO40_08320 PF09820 Predicted AAA-ATPase JO40_08330 PF01202 Shikimate kinase JO40_08335 PF00390 Malic enzyme, N-terminal domain JO40_08335 PF03949 Malic enzyme, NAD binding domain JO40_08355 PF00528 Binding-protein-dependent transport system inner membrane component JO40_08360 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_08360 PF00528 Binding-protein-dependent transport system inner membrane component JO40_08365 PF00005 ABC transporter JO40_08365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_08370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_08370 PF00005 ABC transporter JO40_08375 PF01613 Flavin reductase like domain JO40_08375 PF00753 Metallo-beta-lactamase superfamily JO40_08385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JO40_08390 PF00398 Ribosomal RNA adenine dimethylase JO40_08400 PF00849 RNA pseudouridylate synthase JO40_08405 PF01479 S4 domain JO40_08405 PF00849 RNA pseudouridylate synthase JO40_08420 PF03755 YicC-like family, N-terminal region JO40_08420 PF08340 Domain of unknown function (DUF1732) JO40_08440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_08440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_08440 PF03129 Anticodon binding domain JO40_08470 PF02401 LytB protein JO40_08495 PF02654 Cobalamin-5-phosphate synthase JO40_08515 PF05175 Methyltransferase small domain JO40_08520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_08525 PF08534 Redoxin JO40_08555 PF02653 Branched-chain amino acid transport system / permease component JO40_08560 PF02653 Branched-chain amino acid transport system / permease component JO40_08560 PF11862 Domain of unknown function (DUF3382) JO40_08565 PF00005 ABC transporter JO40_08565 PF12399 Branched-chain amino acid ATP-binding cassette transporter JO40_08570 PF00005 ABC transporter JO40_08585 PF02733 Dak1 domain JO40_08590 PF02734 DAK2 domain JO40_08590 PF02733 Dak1 domain JO40_08600 PF01032 FecCD transport family JO40_08625 PF01509 TruB family pseudouridylate synthase (N terminal domain) JO40_08630 PF02033 Ribosome-binding factor A JO40_08635 PF11987 Translation-initiation factor 2 JO40_08635 PF04760 Translation initiation factor IF-2, N-terminal region JO40_08635 PF00009 Elongation factor Tu GTP binding domain JO40_08640 PF13184 NusA-like KH domain JO40_08640 PF08529 NusA N-terminal domain JO40_08640 PF00575 S1 RNA binding domain JO40_08645 PF17384 RimP C-terminal SH3 domain JO40_08645 PF02576 RimP N-terminal domain JO40_08650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JO40_08650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JO40_08665 PF05191 Adenylate kinase, active site lid JO40_08670 PF01212 Beta-eliminating lyase JO40_08690 PF01740 STAS domain JO40_08730 PF02390 Putative methyltransferase JO40_08735 PF01264 Chorismate synthase JO40_08755 PF00118 TCP-1/cpn60 chaperonin family JO40_08770 PF10672 S-adenosylmethionine-dependent methyltransferase JO40_08775 PF06971 Putative DNA-binding protein N-terminus JO40_08775 PF02629 CoA binding domain JO40_08780 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JO40_08780 PF02779 Transketolase, pyrimidine binding domain JO40_08780 PF02780 Transketolase, C-terminal domain JO40_08785 PF02457 DisA bacterial checkpoint controller nucleotide-binding JO40_08795 PF01648 4'-phosphopantetheinyl transferase superfamily JO40_08800 PF03313 Serine dehydratase alpha chain JO40_08805 PF06832 Penicillin-Binding Protein C-terminus Family JO40_08805 PF00905 Penicillin binding protein transpeptidase domain JO40_08805 PF00912 Transglycosylase JO40_08810 PF00707 Translation initiation factor IF-3, C-terminal domain JO40_08810 PF05198 Translation initiation factor IF-3, N-terminal domain JO40_08815 PF01632 Ribosomal protein L35 JO40_08820 PF00453 Ribosomal protein L20 JO40_08830 PF05164 Cell division protein ZapA JO40_08835 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JO40_08845 PF01476 LysM domain JO40_08845 PF01464 Transglycosylase SLT domain JO40_08870 PF02073 Thermophilic metalloprotease (M29) JO40_08925 PF00343 Carbohydrate phosphorylase JO40_08935 PF00155 Aminotransferase class I and II JO40_08960 PF13537 Glutamine amidotransferase domain JO40_08960 PF00156 Phosphoribosyl transferase domain JO40_08970 PF01555 DNA methylase JO40_08990 PF04552 Sigma-54, DNA binding domain JO40_08990 PF00309 Sigma-54 factor, Activator interacting domain (AID) JO40_08990 PF04963 Sigma-54 factor, core binding domain JO40_08995 PF00753 Metallo-beta-lactamase superfamily JO40_09010 PF02028 BCCT, betaine/carnitine/choline family transporter JO40_09015 PF12804 MobA-like NTP transferase domain JO40_09020 PF01235 Sodium:alanine symporter family JO40_09040 PF01713 Smr domain JO40_09040 PF00488 MutS domain V JO40_09070 PF01882 Protein of unknown function DUF58 JO40_09085 PF03471 Transporter associated domain JO40_09085 PF00571 CBS domain JO40_09090 PF02130 Uncharacterized protein family UPF0054 JO40_09095 PF01966 HD domain JO40_09095 PF07698 7TM receptor with intracellular HD hydrolase JO40_09095 PF07697 7TM-HD extracellular JO40_09100 PF02562 PhoH-like protein JO40_09115 PF00121 Triosephosphate isomerase JO40_09120 PF04101 Glycosyltransferase family 28 C-terminal domain JO40_09120 PF03033 Glycosyltransferase family 28 N-terminal domain JO40_09140 PF00753 Metallo-beta-lactamase superfamily JO40_09155 PF00206 Lyase JO40_09155 PF10415 Fumarase C C-terminus JO40_09160 PF00691 OmpA family JO40_09160 PF13488 Glycine zipper JO40_09170 PF06733 DEAD_2 JO40_09170 PF13307 Helicase C-terminal domain JO40_09200 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_09200 PF00672 HAMP domain JO40_09205 PF04773 FecR protein JO40_09245 PF02674 Colicin V production protein JO40_09250 PF09115 DNA polymerase III, delta subunit, C terminal JO40_09260 PF00158 Sigma-54 interaction domain JO40_09260 PF00072 Response regulator receiver domain JO40_09260 PF02954 Bacterial regulatory protein, Fis family JO40_09265 PF01728 FtsJ-like methyltransferase JO40_09275 PF17820 PDZ domain JO40_09275 PF13180 PDZ domain JO40_09280 PF00999 Sodium/hydrogen exchanger family JO40_09285 PF02690 Na+/Pi-cotransporter JO40_09330 PF00583 Acetyltransferase (GNAT) family JO40_09340 PF04055 Radical SAM superfamily JO40_09340 PF13186 Iron-sulfur cluster-binding domain JO40_09350 PF01638 HxlR-like helix-turn-helix JO40_09355 PF00037 4Fe-4S binding domain JO40_09365 PF00753 Metallo-beta-lactamase superfamily JO40_09365 PF12706 Beta-lactamase superfamily domain JO40_09370 PF13280 WYL domain JO40_09370 PF08279 HTH domain JO40_09385 PF00005 ABC transporter JO40_09395 PF12833 Helix-turn-helix domain JO40_09395 PF02311 AraC-like ligand binding domain JO40_09400 PF00664 ABC transporter transmembrane region JO40_09400 PF00005 ABC transporter JO40_09425 PF00005 ABC transporter JO40_09475 PF00271 Helicase conserved C-terminal domain JO40_09475 PF17757 UvrB interaction domain JO40_09475 PF12344 Ultra-violet resistance protein B JO40_09475 PF02151 UvrB/uvrC motif JO40_09475 PF04851 Type III restriction enzyme, res subunit JO40_09480 PF01256 Carbohydrate kinase JO40_09480 PF03853 YjeF-related protein N-terminus JO40_09485 PF00773 RNB domain JO40_09510 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JO40_09515 PF01467 Cytidylyltransferase-like JO40_09530 PF00664 ABC transporter transmembrane region JO40_09530 PF00005 ABC transporter JO40_09550 PF01991 ATP synthase (E/31 kDa) subunit JO40_09555 PF01022 Bacterial regulatory protein, arsR family JO40_09560 PF00403 Heavy-metal-associated domain JO40_09565 PF02743 Cache domain JO40_09565 PF00672 HAMP domain JO40_09565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_09570 PF01479 S4 domain JO40_09570 PF00849 RNA pseudouridylate synthase JO40_09585 PF10531 SLBB domain JO40_09585 PF13375 RnfC Barrel sandwich hybrid domain JO40_09585 PF13237 4Fe-4S dicluster domain JO40_09585 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JO40_09590 PF03116 NQR2, RnfD, RnfE family JO40_09620 PF10609 NUBPL iron-transfer P-loop NTPase JO40_09635 PF02540 NAD synthase JO40_09650 PF12848 ABC transporter JO40_09650 PF00005 ABC transporter JO40_09650 PF16326 ABC transporter C-terminal domain JO40_09655 PF08239 Bacterial SH3 domain JO40_09670 PF01966 HD domain JO40_09720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_09720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JO40_09725 PF00266 Aminotransferase class-V JO40_09745 PF00005 ABC transporter JO40_09765 PF13847 Methyltransferase domain JO40_09780 PF02350 UDP-N-acetylglucosamine 2-epimerase JO40_09785 PF00535 Glycosyl transferase family 2 JO40_09795 PF00483 Nucleotidyl transferase JO40_09800 PF16363 GDP-mannose 4,6 dehydratase JO40_09815 PF01370 NAD dependent epimerase/dehydratase family JO40_09830 PF00535 Glycosyl transferase family 2 JO40_09835 PF00535 Glycosyl transferase family 2 JO40_09845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JO40_09845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JO40_09845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JO40_09850 PF00535 Glycosyl transferase family 2 JO40_09860 PF05523 WxcM-like, C-terminal JO40_09890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO40_09895 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) JO40_09920 PF02096 60Kd inner membrane protein JO40_09950 PF02096 60Kd inner membrane protein JO40_09950 PF14849 YidC periplasmic domain JO40_09960 PF00534 Glycosyl transferases group 1 JO40_09960 PF13439 Glycosyltransferase Family 4 JO40_09965 PF01370 NAD dependent epimerase/dehydratase family JO40_09970 PF00483 Nucleotidyl transferase JO40_09975 PF16363 GDP-mannose 4,6 dehydratase JO40_09980 PF13393 Histidyl-tRNA synthetase JO40_09990 PF10996 Beta-Casp domain JO40_09990 PF00753 Metallo-beta-lactamase superfamily JO40_09990 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JO40_10005 PF00005 ABC transporter JO40_10005 PF12848 ABC transporter JO40_10015 PF13180 PDZ domain JO40_10015 PF03572 Peptidase family S41 JO40_10070 PF00675 Insulinase (Peptidase family M16) JO40_10070 PF05193 Peptidase M16 inactive domain JO40_10070 PF08367 Peptidase M16C associated JO40_10075 PF02075 Crossover junction endodeoxyribonuclease RuvC JO40_10080 PF01330 RuvA N terminal domain JO40_10155 PF00005 ABC transporter JO40_10160 PF12704 MacB-like periplasmic core domain JO40_10160 PF02687 FtsX-like permease family JO40_10160 PF00005 ABC transporter JO40_10195 PF01934 Protein of unknown function DUF86 JO40_10310 PF01934 Protein of unknown function DUF86 JO40_10330 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JO40_10350 PF07650 KH domain JO40_10350 PF01926 50S ribosome-binding GTPase JO40_10355 PF04060 Putative Fe-S cluster JO40_10360 PF03144 Elongation factor Tu domain 2 JO40_10360 PF00009 Elongation factor Tu GTP binding domain JO40_10360 PF14492 Elongation Factor G, domain II JO40_10360 PF00679 Elongation factor G C-terminus JO40_10360 PF06421 GTP-binding protein LepA C-terminus JO40_10400 PF05525 Branched-chain amino acid transport protein JO40_10415 PF04055 Radical SAM superfamily JO40_10415 PF00919 Uncharacterized protein family UPF0004 JO40_10445 PF00829 Ribosomal prokaryotic L21 protein JO40_10455 PF01016 Ribosomal L27 protein JO40_10460 PF01926 50S ribosome-binding GTPase JO40_10460 PF01018 GTP1/OBG JO40_10465 PF01467 Cytidylyltransferase-like JO40_10480 PF02417 Chromate transporter JO40_10485 PF02417 Chromate transporter JO40_10490 PF01556 DnaJ C terminal domain JO40_10490 PF00226 DnaJ domain JO40_10490 PF00684 DnaJ central domain JO40_10500 PF03372 Endonuclease/Exonuclease/phosphatase family JO40_10510 PF00037 4Fe-4S binding domain JO40_10520 PF01551 Peptidase family M23 JO40_10520 PF04225 Opacity-associated protein A LysM-like domain JO40_10530 PF17092 Penicillin-binding protein OB-like domain JO40_10530 PF00905 Penicillin binding protein transpeptidase domain JO40_10530 PF00912 Transglycosylase JO40_10540 PF00501 AMP-binding enzyme JO40_10585 PF01743 Poly A polymerase head domain JO40_10585 PF12627 Probable RNA and SrmB- binding site of polymerase A JO40_10585 PF12626 Polymerase A arginine-rich C-terminus JO40_10615 PF01047 MarR family JO40_10620 PF00958 GMP synthase C terminal domain JO40_10620 PF00117 Glutamine amidotransferase class-I JO40_10620 PF01171 PP-loop family JO40_10635 PF00162 Phosphoglycerate kinase JO40_10640 PF01520 N-acetylmuramoyl-L-alanine amidase JO40_10650 PF04620 Flagellar filament outer layer protein Flaa JO40_10660 PF01649 Ribosomal protein S20 JO40_10680 PF02464 Competence-damaged protein JO40_10680 PF18146 Damage-inducible protein CinA KH domain JO40_10680 PF00994 Probable molybdopterin binding domain JO40_10710 PF00300 Histidine phosphatase superfamily (branch 1) JO40_10715 PF07364 Metallopeptidase family M81 JO40_10715 PF07171 MlrC C-terminus JO40_10720 PF01869 BadF/BadG/BcrA/BcrD ATPase family JO40_10740 PF00005 ABC transporter JO40_10760 PF00156 Phosphoribosyl transferase domain JO40_10765 PF16886 ATPsynthase alpha/beta subunit N-term extension JO40_10765 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_10765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_10770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_10770 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_10775 PF01813 ATP synthase subunit D JO40_10790 PF01250 Ribosomal protein S6 JO40_10795 PF00436 Single-strand binding protein family JO40_10800 PF01084 Ribosomal protein S18 JO40_10805 PF01281 Ribosomal protein L9, N-terminal domain JO40_10805 PF03948 Ribosomal protein L9, C-terminal domain JO40_10815 PF07724 AAA domain (Cdc48 subfamily) JO40_10815 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_10815 PF06689 ClpX C4-type zinc finger JO40_10820 PF00574 Clp protease JO40_10825 PF05698 Bacterial trigger factor protein (TF) C-terminus JO40_10825 PF05697 Bacterial trigger factor protein (TF) JO40_10825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO40_10845 PF00155 Aminotransferase class I and II JO40_10855 PF01008 Initiation factor 2 subunit family JO40_10870 PF00691 OmpA family JO40_10875 PF00772 DnaB-like helicase N terminal domain JO40_10875 PF03796 DnaB-like helicase C terminal domain JO40_10885 PF01411 tRNA synthetases class II (A) JO40_10885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_10890 PF13145 PPIC-type PPIASE domain JO40_10895 PF01029 NusB family JO40_10910 PF04408 Helicase associated domain (HA2) JO40_10910 PF00270 DEAD/DEAH box helicase JO40_10910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JO40_10910 PF00271 Helicase conserved C-terminal domain JO40_10915 PF08011 PD-(D/E)XK nuclease superfamily JO40_10915 PF09820 Predicted AAA-ATPase JO40_10925 PF02779 Transketolase, pyrimidine binding domain JO40_10925 PF00456 Transketolase, thiamine diphosphate binding domain JO40_10930 PF16363 GDP-mannose 4,6 dehydratase JO40_10935 PF01880 Desulfoferrodoxin JO40_10935 PF06397 Desulfoferrodoxin, N-terminal domain JO40_10985 PF02463 RecF/RecN/SMC N terminal domain JO40_11005 PF00877 NlpC/P60 family JO40_11005 PF01476 LysM domain JO40_11015 PF07475 HPr Serine kinase C-terminal domain JO40_11015 PF02603 HPr Serine kinase N terminus JO40_11020 PF00381 PTS HPr component phosphorylation site JO40_11030 PF01523 Putative modulator of DNA gyrase JO40_11045 PF13277 YmdB-like protein JO40_11055 PF00348 Polyprenyl synthetase JO40_11080 PF03692 Putative zinc- or iron-chelating domain JO40_11095 PF02618 YceG-like family JO40_11115 PF01351 Ribonuclease HII JO40_11120 PF03812 2-keto-3-deoxygluconate permease JO40_11125 PF07005 Sugar-binding N-terminal domain JO40_11125 PF17042 Nucleotide-binding C-terminal domain JO40_11130 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JO40_11135 PF08666 SAF domain JO40_11140 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JO40_11145 PF00455 DeoR C terminal sensor domain JO40_11145 PF08220 DeoR-like helix-turn-helix domain JO40_11150 PF14841 FliG middle domain JO40_11150 PF14842 FliG N-terminal domain JO40_11150 PF01706 FliG C-terminal domain JO40_11175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO40_11190 PF13186 Iron-sulfur cluster-binding domain JO40_11205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JO40_11205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JO40_11210 PF00465 Iron-containing alcohol dehydrogenase JO40_11215 PF17864 RuvB AAA lid domain JO40_11215 PF05496 Holliday junction DNA helicase RuvB P-loop domain JO40_11215 PF05491 RuvB C-terminal winged helix domain JO40_11225 PF00392 Bacterial regulatory proteins, gntR family JO40_11230 PF02810 SEC-C motif JO40_11230 PF07517 SecA DEAD-like domain JO40_11230 PF01043 SecA preprotein cross-linking domain JO40_11230 PF07516 SecA Wing and Scaffold domain JO40_11235 PF00551 Formyl transferase JO40_11240 PF01808 AICARFT/IMPCHase bienzyme JO40_11240 PF02142 MGS-like domain JO40_11245 PF02575 YbaB/EbfC DNA-binding family JO40_11250 PF02132 RecR protein JO40_11250 PF13662 Toprim domain JO40_11255 PF00365 Phosphofructokinase JO40_11265 PF00919 Uncharacterized protein family UPF0004 JO40_11265 PF01938 TRAM domain JO40_11265 PF04055 Radical SAM superfamily JO40_11300 PF08323 Starch synthase catalytic domain JO40_11300 PF00534 Glycosyl transferases group 1 JO40_11325 PF02938 GAD domain JO40_11325 PF00152 tRNA synthetases class II (D, K and N) JO40_11325 PF01336 OB-fold nucleic acid binding domain JO40_11330 PF00579 tRNA synthetases class I (W and Y) JO40_11335 PF01584 CheW-like domain JO40_11345 PF01513 ATP-NAD kinase JO40_11350 PF00005 ABC transporter JO40_11350 PF12848 ABC transporter JO40_11355 PF02906 Iron only hydrogenase large subunit, C-terminal domain JO40_11355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JO40_11355 PF02256 Iron hydrogenase small subunit JO40_11355 PF00037 4Fe-4S binding domain JO40_11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_11360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JO40_11365 PF01888 CbiD JO40_11370 PF00293 NUDIX domain JO40_11425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO40_11425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JO40_11435 PF02347 Glycine cleavage system P-protein JO40_11440 PF02347 Glycine cleavage system P-protein JO40_11445 PF01597 Glycine cleavage H-protein JO40_11450 PF08669 Glycine cleavage T-protein C-terminal barrel domain JO40_11450 PF01571 Aminomethyltransferase folate-binding domain JO40_11460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_11460 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_11465 PF01555 DNA methylase JO40_11465 PF18273 Type III R-M EcoP15I C-terminal domain JO40_11470 PF08774 VRR-NUC domain JO40_11470 PF04851 Type III restriction enzyme, res subunit JO40_11480 PF04223 Citrate lyase, alpha subunit (CitF) JO40_11485 PF03328 HpcH/HpaI aldolase/citrate lyase family JO40_11490 PF06857 Malonate decarboxylase delta subunit (MdcD) JO40_11500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JO40_11500 PF01612 3'-5' exonuclease JO40_11500 PF00476 DNA polymerase family A JO40_11500 PF01367 5'-3' exonuclease, C-terminal SAM fold JO40_11505 PF01121 Dephospho-CoA kinase JO40_11515 PF01488 Shikimate / quinate 5-dehydrogenase JO40_11515 PF08501 Shikimate dehydrogenase substrate binding domain JO40_11515 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JO40_11520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JO40_11530 PF03793 PASTA domain JO40_11535 PF00551 Formyl transferase JO40_11535 PF02911 Formyl transferase, C-terminal domain JO40_11540 PF01327 Polypeptide deformylase JO40_11550 PF00005 ABC transporter JO40_11555 PF02632 BioY family JO40_11665 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JO40_11670 PF08218 Citrate lyase ligase C-terminal domain JO40_11675 PF05683 Fumarase C-terminus JO40_11675 PF05681 Fumarate hydratase (Fumerase) JO40_11680 PF05681 Fumarate hydratase (Fumerase) JO40_11705 PF00005 ABC transporter JO40_11710 PF12704 MacB-like periplasmic core domain JO40_11710 PF02687 FtsX-like permease family JO40_11730 PF10634 Fe2+ transport protein JO40_11735 PF03239 Iron permease FTR1 family JO40_11745 PF00005 ABC transporter JO40_11745 PF00664 ABC transporter transmembrane region JO40_11750 PF00005 ABC transporter JO40_11760 PF03315 Serine dehydratase beta chain JO40_11760 PF01842 ACT domain JO40_11765 PF03313 Serine dehydratase alpha chain JO40_11775 PF01197 Ribosomal protein L31 JO40_11780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_11780 PF07498 Rho termination factor, N-terminal domain JO40_11780 PF07497 Rho termination factor, RNA-binding domain JO40_11800 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_11800 PF00391 PEP-utilising enzyme, mobile domain JO40_11800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO40_11810 PF00206 Lyase JO40_11810 PF10397 Adenylosuccinate lyase C-terminus JO40_11830 PF02463 RecF/RecN/SMC N terminal domain JO40_11830 PF06470 SMC proteins Flexible Hinge Domain JO40_11845 PF00072 Response regulator receiver domain JO40_11855 PF01584 CheW-like domain JO40_11860 PF01584 CheW-like domain JO40_11860 PF02895 Signal transducing histidine kinase, homodimeric domain JO40_11860 PF07194 P2 response regulator binding domain JO40_11860 PF01627 Hpt domain JO40_11860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_11875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JO40_11875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JO40_11880 PF01709 Transcriptional regulator JO40_11905 PF01321 Creatinase/Prolidase N-terminal domain JO40_11905 PF00557 Metallopeptidase family M24 JO40_11930 PF00700 Bacterial flagellin C-terminal helical region JO40_11930 PF00669 Bacterial flagellin N-terminal helical region JO40_11935 PF00700 Bacterial flagellin C-terminal helical region JO40_11935 PF00669 Bacterial flagellin N-terminal helical region JO40_11945 PF02465 Flagellar hook-associated protein 2 N-terminus JO40_11945 PF07195 Flagellar hook-associated protein 2 C-terminus JO40_11960 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JO40_11970 PF00672 HAMP domain JO40_11970 PF01966 HD domain JO40_11975 PF06969 HemN C-terminal domain JO40_11975 PF04055 Radical SAM superfamily JO40_11980 PF10502 Signal peptidase, peptidase S26 JO40_12000 PF03062 MBOAT, membrane-bound O-acyltransferase family JO40_12020 PF01145 SPFH domain / Band 7 family JO40_12030 PF03477 ATP cone domain JO40_12060 PF01205 Uncharacterized protein family UPF0029 JO40_12060 PF09186 Domain of unknown function (DUF1949) JO40_12090 PF00905 Penicillin binding protein transpeptidase domain JO40_12090 PF03717 Penicillin-binding Protein dimerisation domain JO40_12100 PF05872 Bacterial protein of unknown function (DUF853) JO40_12105 PF01555 DNA methylase JO40_12140 PF01973 Protein of unknown function DUF115 JO40_12165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JO40_12170 PF16874 Glycosyl hydrolase family 36 C-terminal domain JO40_12170 PF16875 Glycosyl hydrolase family 36 N-terminal domain JO40_12185 PF03193 RsgA GTPase JO40_12190 PF01177 Asp/Glu/Hydantoin racemase JO40_12210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_12230 PF08264 Anticodon-binding domain of tRNA JO40_12230 PF10458 Valyl tRNA synthetase tRNA binding arm JO40_12230 PF00133 tRNA synthetases class I (I, L, M and V) JO40_12235 PF00860 Permease family JO40_12245 PF01263 Aldose 1-epimerase JO40_12260 PF01098 Cell cycle protein JO40_12265 PF03717 Penicillin-binding Protein dimerisation domain JO40_12265 PF00905 Penicillin binding protein transpeptidase domain JO40_12295 PF04542 Sigma-70 region 2 JO40_12295 PF04539 Sigma-70 region 3 JO40_12295 PF03979 Sigma-70 factor, region 1.1 JO40_12295 PF00140 Sigma-70 factor, region 1.2 JO40_12295 PF04545 Sigma-70, region 4 JO40_12300 PF08275 DNA primase catalytic core, N-terminal domain JO40_12300 PF01807 CHC2 zinc finger JO40_12305 PF13335 Magnesium chelatase, subunit ChlI C-terminal JO40_12305 PF01078 Magnesium chelatase, subunit ChlI JO40_12320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO40_12320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO40_12320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO40_12320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO40_12325 PF00929 Exonuclease JO40_12330 PF00005 ABC transporter JO40_12335 PF01432 Peptidase family M3 JO40_12335 PF08439 Oligopeptidase F JO40_12345 PF18337 RapA N-terminal Tudor like domain JO40_12345 PF18339 RapA N-terminal Tudor like domain 1 JO40_12345 PF00176 SNF2 family N-terminal domain JO40_12345 PF12137 RNA polymerase recycling family C-terminal JO40_12345 PF00271 Helicase conserved C-terminal domain JO40_12365 PF02796 Helix-turn-helix domain of resolvase JO40_12365 PF00239 Resolvase, N terminal domain JO40_12380 PF00664 ABC transporter transmembrane region JO40_12380 PF00005 ABC transporter JO40_12380 PF08021 Siderophore-interacting FAD-binding domain JO40_12380 PF04954 Siderophore-interacting protein JO40_12390 PF00664 ABC transporter transmembrane region JO40_12390 PF00005 ABC transporter JO40_12770 PF00691 OmpA family JO40_12775 PF01026 TatD related DNase JO40_12785 PF03330 Lytic transglycolase JO40_12795 PF13439 Glycosyltransferase Family 4 JO40_12795 PF00534 Glycosyl transferases group 1 JO40_12805 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_12805 PF17871 AAA lid domain JO40_12805 PF07724 AAA domain (Cdc48 subfamily) JO40_12805 PF02861 Clp amino terminal domain, pathogenicity island component JO40_12805 PF00004 ATPase family associated with various cellular activities (AAA) JO40_12810 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain JO40_12815 PF02151 UvrB/uvrC motif JO40_12825 PF00005 ABC transporter JO40_12830 PF02687 FtsX-like permease family JO40_12830 PF12704 MacB-like periplasmic core domain JO40_12840 PF02881 SRP54-type protein, helical bundle domain JO40_12840 PF00448 SRP54-type protein, GTPase domain JO40_12855 PF03462 PCRF domain JO40_12855 PF00472 RF-1 domain JO40_12895 PF00586 AIR synthase related protein, N-terminal domain JO40_12895 PF02769 AIR synthase related protein, C-terminal domain JO40_12895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JO40_12900 PF04260 Protein of unknown function (DUF436) JO40_12910 PF09820 Predicted AAA-ATPase JO40_12910 PF08011 PD-(D/E)XK nuclease superfamily JO40_12915 PF02906 Iron only hydrogenase large subunit, C-terminal domain JO40_12915 PF02256 Iron hydrogenase small subunit JO40_12915 PF12838 4Fe-4S dicluster domain JO40_12935 PF00005 ABC transporter JO40_12935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_12940 PF00005 ABC transporter JO40_12940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_12955 PF17726 Dam-replacing HTH domain JO40_12955 PF06044 Dam-replacing family JO40_12960 PF02844 Phosphoribosylglycinamide synthetase, N domain JO40_12960 PF02843 Phosphoribosylglycinamide synthetase, C domain JO40_12960 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JO40_12965 PF02769 AIR synthase related protein, C-terminal domain JO40_12965 PF00586 AIR synthase related protein, N-terminal domain JO40_12975 PF04551 GcpE protein JO40_12985 PF13180 PDZ domain JO40_12985 PF17820 PDZ domain JO40_13000 PF01171 PP-loop family JO40_13005 PF14693 Ribosomal protein TL5, C-terminal domain JO40_13005 PF01386 Ribosomal L25p family JO40_13015 PF04026 SpoVG JO40_13020 PF08544 GHMP kinases C terminal JO40_13020 PF00288 GHMP kinases N terminal domain JO40_13025 PF03484 tRNA synthetase B5 domain JO40_13025 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JO40_13090 PF07581 The GLUG motif JO40_13090 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) JO40_13125 PF00163 Ribosomal protein S4/S9 N-terminal domain JO40_13125 PF01479 S4 domain JO40_13170 PF02608 ABC transporter substrate-binding protein PnrA-like JO40_13175 PF05343 M42 glutamyl aminopeptidase JO40_13180 PF07478 D-ala D-ala ligase C-terminus JO40_13180 PF01820 D-ala D-ala ligase N-terminus JO40_13190 PF02446 4-alpha-glucanotransferase JO40_13195 PF00574 Clp protease JO40_13200 PF03186 CobD/Cbib protein JO40_13210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JO40_13220 PF14804 Jag N-terminus JO40_13220 PF01424 R3H domain JO40_13225 PF14849 YidC periplasmic domain JO40_13225 PF02096 60Kd inner membrane protein JO40_13230 PF01809 Putative membrane protein insertion efficiency factor JO40_13235 PF00825 Ribonuclease P JO40_13240 PF00468 Ribosomal protein L34 JO40_13245 PF10282 Lactonase, 7-bladed beta-propeller JO40_13250 PF01297 Zinc-uptake complex component A periplasmic JO40_13255 PF00005 ABC transporter JO40_13260 PF00950 ABC 3 transport family JO40_13275 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO40_13275 PF00933 Glycosyl hydrolase family 3 N terminal domain JO40_13290 PF18269 T3SS EscN ATPase C-terminal domain JO40_13290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_13290 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_13295 PF02108 Flagellar assembly protein FliH JO40_13300 PF01706 FliG C-terminal domain JO40_13300 PF14842 FliG N-terminal domain JO40_13300 PF14841 FliG middle domain JO40_13305 PF01514 Secretory protein of YscJ/FliF family JO40_13305 PF08345 Flagellar M-ring protein C-terminal JO40_13310 PF02049 Flagellar hook-basal body complex protein FliE JO40_13315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_13315 PF00460 Flagella basal body rod protein JO40_13320 PF00460 Flagella basal body rod protein JO40_13325 PF07724 AAA domain (Cdc48 subfamily) JO40_13325 PF00004 ATPase family associated with various cellular activities (AAA) JO40_13330 PF00227 Proteasome subunit JO40_13335 PF02899 Phage integrase, N-terminal SAM-like domain JO40_13335 PF00589 Phage integrase family JO40_13340 PF01131 DNA topoisomerase JO40_13340 PF01751 Toprim domain JO40_13340 PF01396 Topoisomerase DNA binding C4 zinc finger JO40_13345 PF17782 DprA winged helix domain JO40_13345 PF02481 DNA recombination-mediator protein A JO40_13355 PF02899 Phage integrase, N-terminal SAM-like domain JO40_13355 PF00589 Phage integrase family JO40_13360 PF12327 FtsZ family, C-terminal domain JO40_13360 PF00091 Tubulin/FtsZ family, GTPase domain JO40_13365 PF02491 SHS2 domain inserted in FTSA JO40_13370 PF03799 Cell division protein FtsQ JO40_13370 PF08478 POTRA domain, FtsQ-type JO40_13375 PF01098 Cell cycle protein JO40_13395 PF01795 MraW methylase family JO40_13400 PF02381 MraZ protein, putative antitoxin-like JO40_13405 PF00326 Prolyl oligopeptidase family JO40_13405 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain