JO40_00055	PWY-7560	methylerythritol phosphate pathway II
JO40_00220	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JO40_00225	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
JO40_00260	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
JO40_00260	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
JO40_00425	PWY-7793	JO40_00425
JO40_00540	PWY-3821	galactose degradation III
JO40_00540	PWY-6317	galactose degradation I (Leloir pathway)
JO40_00540	PWY-6527	stachyose degradation
JO40_00555	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JO40_00630	PWY-5087	L-glutamate degradation VI (to pyruvate)
JO40_00630	PWY-5103	L-isoleucine biosynthesis III
JO40_00630	PWY-6728	methylaspartate cycle
JO40_00745	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_00745	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_00745	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_00900	PWY-4981	L-proline biosynthesis II (from arginine)
JO40_00900	PWY-4984	urea cycle
JO40_00900	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
JO40_01075	PWY-5087	L-glutamate degradation VI (to pyruvate)
JO40_01075	PWY-6728	methylaspartate cycle
JO40_01080	PWY-5087	L-glutamate degradation VI (to pyruvate)
JO40_01080	PWY-5103	L-isoleucine biosynthesis III
JO40_01080	PWY-6728	methylaspartate cycle
JO40_01085	PWY-5686	UMP biosynthesis
JO40_01085	PWY-7790	JO40_01085
JO40_01085	PWY-7791	JO40_01085
JO40_01100	PWY-5686	UMP biosynthesis
JO40_01100	PWY-7790	JO40_01100
JO40_01100	PWY-7791	JO40_01100
JO40_01165	PWY-6700	queuosine biosynthesis
JO40_01170	PWY-7805	JO40_01170
JO40_01170	PWY-7807	JO40_01170
JO40_01185	PWY-7801	JO40_01185
JO40_01310	PWY-1042	glycolysis IV (plant cytosol)
JO40_01310	PWY-1622	formaldehyde assimilation I (serine pathway)
JO40_01310	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JO40_01310	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_01310	PWY-5723	Rubisco shunt
JO40_01310	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JO40_01310	PWY-6886	1-butanol autotrophic biosynthesis
JO40_01310	PWY-6901	superpathway of glucose and xylose degradation
JO40_01310	PWY-7003	glycerol degradation to butanol
JO40_01310	PWY-7124	ethylene biosynthesis V (engineered)
JO40_01310	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JO40_01435	PWY-7805	JO40_01435
JO40_01435	PWY-7807	JO40_01435
JO40_01440	PWY-7181	pyrimidine deoxyribonucleosides degradation
JO40_01575	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
JO40_01575	PWY-6167	flavin biosynthesis II (archaea)
JO40_01575	PWY-6168	flavin biosynthesis III (fungi)
JO40_01575	PWY-7863	JO40_01575
JO40_01610	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JO40_01610	PWY-6578	8-amino-7-oxononanoate biosynthesis III
JO40_01610	PWY-7147	8-amino-7-oxononanoate biosynthesis II
JO40_01615	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JO40_01665	PWY-7560	methylerythritol phosphate pathway II
JO40_01670	PWY-7560	methylerythritol phosphate pathway II
JO40_01695	PWY-3821	galactose degradation III
JO40_01695	PWY-6317	galactose degradation I (Leloir pathway)
JO40_01695	PWY-6527	stachyose degradation
JO40_01735	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
JO40_01765	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
JO40_01765	PWY-7177	UTP and CTP dephosphorylation II
JO40_01765	PWY-7185	UTP and CTP dephosphorylation I
JO40_01795	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JO40_01985	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JO40_01985	PWY-6549	L-glutamine biosynthesis III
JO40_01985	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JO40_01985	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JO40_02070	PWY-1042	glycolysis IV (plant cytosol)
JO40_02070	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
JO40_02070	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_02070	PWY-5723	Rubisco shunt
JO40_02070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JO40_02070	PWY-6886	1-butanol autotrophic biosynthesis
JO40_02070	PWY-6901	superpathway of glucose and xylose degradation
JO40_02070	PWY-7003	glycerol degradation to butanol
JO40_02070	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
JO40_02070	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
JO40_02085	PWY-6303	methyl indole-3-acetate interconversion
JO40_02085	PWY-6857	retinol biosynthesis
JO40_02395	PWY-3801	sucrose degradation II (sucrose synthase)
JO40_02395	PWY-5054	sorbitol biosynthesis I
JO40_02395	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
JO40_02395	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JO40_02395	PWY-5659	GDP-mannose biosynthesis
JO40_02395	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JO40_02395	PWY-621	sucrose degradation III (sucrose invertase)
JO40_02395	PWY-622	starch biosynthesis
JO40_02395	PWY-6981	chitin biosynthesis
JO40_02395	PWY-6992	1,5-anhydrofructose degradation
JO40_02395	PWY-7238	sucrose biosynthesis II
JO40_02395	PWY-7347	sucrose biosynthesis III
JO40_02395	PWY-7385	1,3-propanediol biosynthesis (engineered)
JO40_02460	PWY-6032	cardenolide biosynthesis
JO40_02460	PWY-7455	allopregnanolone biosynthesis
JO40_02480	PWY-7805	JO40_02480
JO40_02480	PWY-7807	JO40_02480
JO40_02525	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
JO40_02535	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JO40_02535	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JO40_02535	PWY-7953	JO40_02535
JO40_02675	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_02680	PWY-5194	siroheme biosynthesis
JO40_02680	PWY-5196	factor 430 biosynthesis
JO40_02680	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_02710	PWY-4381	fatty acid biosynthesis initiation I
JO40_02715	PWY-4381	fatty acid biosynthesis initiation I
JO40_02715	PWY-6799	fatty acid biosynthesis (plant mitochondria)
JO40_02715	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JO40_02730	PWY-5367	petroselinate biosynthesis
JO40_02730	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JO40_02730	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JO40_02730	PWY-5989	stearate biosynthesis II (bacteria and plants)
JO40_02730	PWY-5994	palmitate biosynthesis I (animals and fungi)
JO40_02730	PWY-6113	superpathway of mycolate biosynthesis
JO40_02730	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JO40_02730	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JO40_02730	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JO40_02730	PWY-7663	gondoate biosynthesis (anaerobic)
JO40_02730	PWY-7664	oleate biosynthesis IV (anaerobic)
JO40_02730	PWY-7858	JO40_02730
JO40_02730	PWYG-321	mycolate biosynthesis
JO40_02745	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JO40_02745	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JO40_02745	PWY-5989	stearate biosynthesis II (bacteria and plants)
JO40_02745	PWY-6113	superpathway of mycolate biosynthesis
JO40_02745	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JO40_02745	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JO40_02745	PWY-7663	gondoate biosynthesis (anaerobic)
JO40_02745	PWY-7664	oleate biosynthesis IV (anaerobic)
JO40_02745	PWY-7858	JO40_02745
JO40_02745	PWYG-321	mycolate biosynthesis
JO40_02780	PWY-4381	fatty acid biosynthesis initiation I
JO40_02780	PWY-5743	3-hydroxypropanoate cycle
JO40_02780	PWY-5744	glyoxylate assimilation
JO40_02780	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JO40_02780	PWY-6722	candicidin biosynthesis
JO40_02785	PWY-4381	fatty acid biosynthesis initiation I
JO40_02785	PWY-5743	3-hydroxypropanoate cycle
JO40_02785	PWY-5744	glyoxylate assimilation
JO40_02785	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
JO40_02785	PWY-6722	candicidin biosynthesis
JO40_02790	PWY-5028	L-histidine degradation II
JO40_02790	PWY-5030	L-histidine degradation III
JO40_02855	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
JO40_03165	PWY-7019	butirosin biosynthesis
JO40_03265	PWY-5098	chlorophyll <i>a</i> degradation I
JO40_03265	PWY-6927	chlorophyll <i>a</i> degradation II
JO40_03265	PWY-7164	chlorophyll <i>a</i> degradation III
JO40_03290	PWY-1281	sulfoacetaldehyde degradation I
JO40_03290	PWY-5482	pyruvate fermentation to acetate II
JO40_03290	PWY-5485	pyruvate fermentation to acetate IV
JO40_03290	PWY-5497	purine nucleobases degradation II (anaerobic)
JO40_03290	PWY-6637	sulfolactate degradation II
JO40_03390	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JO40_03390	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
JO40_03440	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_03445	PWY-5194	siroheme biosynthesis
JO40_03445	PWY-5196	factor 430 biosynthesis
JO40_03445	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_03455	PWY-1622	formaldehyde assimilation I (serine pathway)
JO40_03455	PWY-181	photorespiration
JO40_03455	PWY-2161	folate polyglutamylation
JO40_03455	PWY-2201	folate transformations I
JO40_03455	PWY-3661	glycine betaine degradation I
JO40_03455	PWY-3661-1	glycine betaine degradation II (mammalian)
JO40_03455	PWY-3841	folate transformations II
JO40_03455	PWY-5497	purine nucleobases degradation II (anaerobic)
JO40_03465	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JO40_03465	PWY-6596	adenosine nucleotides degradation I
JO40_03465	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JO40_03475	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_03475	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_03475	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_03620	PWY-101	photosynthesis light reactions
JO40_03860	PWY-5028	L-histidine degradation II
JO40_03860	PWY-5030	L-histidine degradation III
JO40_03865	PWY-5030	L-histidine degradation III
JO40_03865	PWY-5497	purine nucleobases degradation II (anaerobic)
JO40_03990	PWY-5030	L-histidine degradation III
JO40_04135	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JO40_04135	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JO40_04135	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JO40_04135	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JO40_04135	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_04135	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_04135	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JO40_04135	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JO40_04140	PWY-1042	glycolysis IV (plant cytosol)
JO40_04140	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_04140	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_04140	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JO40_04140	PWY-7385	1,3-propanediol biosynthesis (engineered)
JO40_04180	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JO40_04180	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JO40_04180	PWY-7766	JO40_04180
JO40_04190	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JO40_04190	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JO40_04190	PWY-7766	JO40_04190
JO40_04230	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
JO40_04230	PWY-6855	chitin degradation I (archaea)
JO40_04230	PWY-6906	chitin derivatives degradation
JO40_04240	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JO40_04240	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JO40_04240	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JO40_04240	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JO40_04240	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_04240	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_04240	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
JO40_04240	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
JO40_04275	PWY-4202	arsenate detoxification I (glutaredoxin)
JO40_04275	PWY-5532	adenosine nucleotides degradation IV
JO40_04275	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
JO40_04275	PWY-6608	guanosine nucleotides degradation III
JO40_04275	PWY-6609	adenine and adenosine salvage III
JO40_04275	PWY-6611	adenine and adenosine salvage V
JO40_04275	PWY-6620	guanine and guanosine salvage
JO40_04275	PWY-6627	salinosporamide A biosynthesis
JO40_04275	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
JO40_04275	PWY-7179	purine deoxyribonucleosides degradation I
JO40_04275	PWY-7179-1	purine deoxyribonucleosides degradation
JO40_04330	PWY-5686	UMP biosynthesis
JO40_04330	PWY-7790	JO40_04330
JO40_04330	PWY-7791	JO40_04330
JO40_04350	PWY-4381	fatty acid biosynthesis initiation I
JO40_04695	PWY-7942	JO40_04695
JO40_04705	PWY-5381	pyridine nucleotide cycling (plants)
JO40_04765	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
JO40_04785	PWY-4981	L-proline biosynthesis II (from arginine)
JO40_04915	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JO40_04915	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JO40_04975	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JO40_04975	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JO40_04975	PWY-7953	JO40_04975
JO40_05115	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_05115	PWY-5723	Rubisco shunt
JO40_05125	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
JO40_05125	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
JO40_05125	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_05125	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
JO40_05125	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
JO40_05125	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
JO40_05205	PWY-6807	xyloglucan degradation II (exoglucanase)
JO40_05230	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
JO40_05230	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
JO40_05285	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JO40_05290	PWY-6164	3-dehydroquinate biosynthesis I
JO40_05295	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
JO40_05295	PWY-6153	autoinducer AI-2 biosynthesis I
JO40_05295	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
JO40_05335	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
JO40_05380	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
JO40_05380	PWY-2201	folate transformations I
JO40_05380	PWY-3841	folate transformations II
JO40_05380	PWY-5030	L-histidine degradation III
JO40_05380	PWY-5497	purine nucleobases degradation II (anaerobic)
JO40_05380	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
JO40_05380	PWY-7909	JO40_05380
JO40_05455	PWY-7805	JO40_05455
JO40_05455	PWY-7807	JO40_05455
JO40_05575	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_05575	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_05575	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_05575	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_05725	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
JO40_05725	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
JO40_06255	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
JO40_06255	PWY-6167	flavin biosynthesis II (archaea)
JO40_06255	PWY-6168	flavin biosynthesis III (fungi)
JO40_06255	PWY-7863	JO40_06255
JO40_06325	PWY-1042	glycolysis IV (plant cytosol)
JO40_06325	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_06325	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_06325	PWY-7385	1,3-propanediol biosynthesis (engineered)
JO40_06355	PWY-2781	<i>cis</i>-zeatin biosynthesis
JO40_06505	PWY-6700	queuosine biosynthesis
JO40_06560	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
JO40_06690	PWY-5269	cardiolipin biosynthesis II
JO40_06690	PWY-5668	cardiolipin biosynthesis I
JO40_06690	PWY-7817	JO40_06690
JO40_06790	PWY-6829	tRNA methylation (yeast)
JO40_06790	PWY-7285	methylwyosine biosynthesis
JO40_06790	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
JO40_06810	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JO40_06810	PWY-6269	adenosylcobalamin salvage from cobinamide II
JO40_06810	PWY-7964	JO40_06810
JO40_06810	PWY-7965	JO40_06810
JO40_06810	PWY-7966	JO40_06810
JO40_06810	PWY-7967	JO40_06810
JO40_06810	PWY-7968	JO40_06810
JO40_06810	PWY-7969	JO40_06810
JO40_06810	PWY-7970	JO40_06810
JO40_06900	PWY-6749	CMP-legionaminate biosynthesis I
JO40_06940	PWY-5482	pyruvate fermentation to acetate II
JO40_06940	PWY-5485	pyruvate fermentation to acetate IV
JO40_06940	PWY-5497	purine nucleobases degradation II (anaerobic)
JO40_07225	PWY-5481	pyruvate fermentation to lactate
JO40_07225	PWY-6901	superpathway of glucose and xylose degradation
JO40_07280	PWY-7884	JO40_07280
JO40_07315	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
JO40_07350	PWY-6123	inosine-5'-phosphate biosynthesis I
JO40_07350	PWY-6124	inosine-5'-phosphate biosynthesis II
JO40_07350	PWY-7234	inosine-5'-phosphate biosynthesis III
JO40_07355	PWY-6123	inosine-5'-phosphate biosynthesis I
JO40_07355	PWY-6124	inosine-5'-phosphate biosynthesis II
JO40_07355	PWY-7234	inosine-5'-phosphate biosynthesis III
JO40_07365	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
JO40_07370	PWY-7887	JO40_07370
JO40_07370	PWY-7892	JO40_07370
JO40_07380	PWY-6910	hydroxymethylpyrimidine salvage
JO40_07380	PWY-7356	thiamin salvage IV (yeast)
JO40_07380	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
JO40_07420	PWY-5028	L-histidine degradation II
JO40_07420	PWY-5030	L-histidine degradation III
JO40_07685	PWY-5667	CDP-diacylglycerol biosynthesis I
JO40_07685	PWY-5981	CDP-diacylglycerol biosynthesis III
JO40_07685	PWY-7902	JO40_07685
JO40_07730	PWY-7205	CMP phosphorylation
JO40_07960	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_07960	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_07985	PWY-5686	UMP biosynthesis
JO40_07985	PWY-7790	JO40_07985
JO40_07985	PWY-7791	JO40_07985
JO40_08165	PWY-5971	palmitate biosynthesis II (bacteria and plants)
JO40_08165	PWY-5973	<i>cis</i>-vaccenate biosynthesis
JO40_08165	PWY-5989	stearate biosynthesis II (bacteria and plants)
JO40_08165	PWY-5994	palmitate biosynthesis I (animals and fungi)
JO40_08165	PWY-6113	superpathway of mycolate biosynthesis
JO40_08165	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
JO40_08165	PWY-6519	8-amino-7-oxononanoate biosynthesis I
JO40_08165	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
JO40_08165	PWY-7663	gondoate biosynthesis (anaerobic)
JO40_08165	PWY-7664	oleate biosynthesis IV (anaerobic)
JO40_08165	PWY-7858	JO40_08165
JO40_08165	PWYG-321	mycolate biosynthesis
JO40_08305	PWY-6700	queuosine biosynthesis
JO40_08330	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JO40_08425	PWY-7205	CMP phosphorylation
JO40_08460	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
JO40_08460	PWY-622	starch biosynthesis
JO40_08460	PWY-7900	JO40_08460
JO40_08470	PWY-7560	methylerythritol phosphate pathway II
JO40_08495	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
JO40_08495	PWY-6269	adenosylcobalamin salvage from cobinamide II
JO40_08495	PWY-7961	JO40_08495
JO40_08495	PWY-7963	JO40_08495
JO40_08495	PWY-7964	JO40_08495
JO40_08495	PWY-7965	JO40_08495
JO40_08495	PWY-7966	JO40_08495
JO40_08495	PWY-7967	JO40_08495
JO40_08495	PWY-7968	JO40_08495
JO40_08495	PWY-7969	JO40_08495
JO40_08495	PWY-7970	JO40_08495
JO40_08495	PWY-7975	JO40_08495
JO40_08515	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_08595	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
JO40_08595	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
JO40_08595	PWY-7766	JO40_08595
JO40_08665	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JO40_08735	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JO40_08780	PWY-6891	thiazole biosynthesis II (Bacillus)
JO40_08780	PWY-6892	thiazole biosynthesis I (E. coli)
JO40_08780	PWY-7560	methylerythritol phosphate pathway II
JO40_08795	PWY-6012	acyl carrier protein metabolism I
JO40_08795	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
JO40_08795	PWY-6289	petrobactin biosynthesis
JO40_08805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_08805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_08805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_08805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_08880	PWY-6825	phosphatidylcholine biosynthesis V
JO40_08925	PWY-5941	glycogen degradation II (eukaryotic)
JO40_08925	PWY-6731	starch degradation III
JO40_08925	PWY-6737	starch degradation V
JO40_08925	PWY-7238	sucrose biosynthesis II
JO40_08950	PWY-7533	gliotoxin biosynthesis
JO40_08960	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_08960	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JO40_08960	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JO40_08960	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
JO40_09115	PWY-1042	glycolysis IV (plant cytosol)
JO40_09115	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_09115	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
JO40_09115	PWY-7003	glycerol degradation to butanol
JO40_09120	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_09120	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_09120	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_09120	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_09155	PWY-5392	reductive TCA cycle II
JO40_09155	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
JO40_09155	PWY-5690	TCA cycle II (plants and fungi)
JO40_09155	PWY-5913	TCA cycle VI (obligate autotrophs)
JO40_09155	PWY-6728	methylaspartate cycle
JO40_09155	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
JO40_09155	PWY-7254	TCA cycle VII (acetate-producers)
JO40_09155	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
JO40_09355	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
JO40_09355	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
JO40_09480	PWY-6938	NADH repair
JO40_09515	PWY-7851	JO40_09515
JO40_09635	PWY-5381	pyridine nucleotide cycling (plants)
JO40_09635	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
JO40_09635	PWY-7761	JO40_09635
JO40_09660	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_09660	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JO40_09660	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JO40_09715	PWY-5757	fosfomycin biosynthesis
JO40_09715	PWY-6322	phosphinothricin tripeptide biosynthesis
JO40_09715	PWY-6682	dehydrophos biosynthesis
JO40_09715	PWY-6839	2-aminoethylphosphonate biosynthesis
JO40_09715	PWY-7419	FR-900098 and FR-33289 antibiotics biosynthesis
JO40_09715	PWY-7510	rhizocticin A and B biosynthesis
JO40_09715	PWY-7769	JO40_09715
JO40_09720	PWY-5757	fosfomycin biosynthesis
JO40_09720	PWY-6322	phosphinothricin tripeptide biosynthesis
JO40_09720	PWY-6682	dehydrophos biosynthesis
JO40_09720	PWY-6839	2-aminoethylphosphonate biosynthesis
JO40_09720	PWY-7510	rhizocticin A and B biosynthesis
JO40_09720	PWY-7769	JO40_09720
JO40_09725	PWY-6832	2-aminoethylphosphonate degradation II
JO40_09795	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
JO40_09795	PWY-5940	streptomycin biosynthesis
JO40_09800	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
JO40_09845	PWY-5667	CDP-diacylglycerol biosynthesis I
JO40_09845	PWY-5981	CDP-diacylglycerol biosynthesis III
JO40_09845	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
JO40_09845	PWY-7820	JO40_09845
JO40_09845	PWY-7902	JO40_09845
JO40_09855	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JO40_09855	PWY-7688	JO40_09855
JO40_09860	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JO40_09860	PWY-7688	JO40_09860
JO40_09970	PWY-3221	dTDP-L-rhamnose biosynthesis II
JO40_09970	PWY-6808	dTDP-D-forosamine biosynthesis
JO40_09970	PWY-6942	dTDP-D-desosamine biosynthesis
JO40_09970	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JO40_09970	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
JO40_09970	PWY-6974	dTDP-L-olivose biosynthesis
JO40_09970	PWY-6976	dTDP-L-mycarose biosynthesis
JO40_09970	PWY-7104	dTDP-L-megosamine biosynthesis
JO40_09970	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
JO40_09970	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
JO40_09970	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
JO40_09970	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
JO40_09970	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
JO40_09970	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
JO40_09970	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
JO40_09970	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
JO40_09970	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
JO40_09970	PWY-7688	JO40_09970
JO40_09970	PWY-7814	JO40_09970
JO40_09975	PWY-3221	dTDP-L-rhamnose biosynthesis II
JO40_09975	PWY-6808	dTDP-D-forosamine biosynthesis
JO40_09975	PWY-6942	dTDP-D-desosamine biosynthesis
JO40_09975	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
JO40_09975	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
JO40_09975	PWY-6974	dTDP-L-olivose biosynthesis
JO40_09975	PWY-6976	dTDP-L-mycarose biosynthesis
JO40_09975	PWY-7104	dTDP-L-megosamine biosynthesis
JO40_09975	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
JO40_09975	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
JO40_09975	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
JO40_09975	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
JO40_09975	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
JO40_09975	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
JO40_09975	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
JO40_09975	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
JO40_09975	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
JO40_09975	PWY-7688	JO40_09975
JO40_09975	PWY-7814	JO40_09975
JO40_10125	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_10125	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_10125	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_10465	PWY-5381	pyridine nucleotide cycling (plants)
JO40_10465	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
JO40_10465	PWY-7761	JO40_10465
JO40_10530	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_10530	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_10530	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_10530	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_10565	PWY-6807	xyloglucan degradation II (exoglucanase)
JO40_10595	PWY-6902	chitin degradation II
JO40_10595	PWY-7822	JO40_10595
JO40_10595	PWY-7883	JO40_10595
JO40_10620	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
JO40_10635	PWY-1042	glycolysis IV (plant cytosol)
JO40_10635	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_10635	PWY-6886	1-butanol autotrophic biosynthesis
JO40_10635	PWY-6901	superpathway of glucose and xylose degradation
JO40_10635	PWY-7003	glycerol degradation to butanol
JO40_10710	PWY-1622	formaldehyde assimilation I (serine pathway)
JO40_10710	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_10755	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JO40_10760	PWY-6605	adenine and adenosine salvage II
JO40_10760	PWY-6610	adenine and adenosine salvage IV
JO40_10760	PWY-7805	JO40_10760
JO40_10760	PWY-7807	JO40_10760
JO40_10765	PWY-7980	JO40_10765
JO40_10770	PWY-7980	JO40_10770
JO40_10855	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
JO40_10855	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
JO40_10925	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_10925	PWY-5723	Rubisco shunt
JO40_10925	PWY-6891	thiazole biosynthesis II (Bacillus)
JO40_10925	PWY-6892	thiazole biosynthesis I (E. coli)
JO40_10925	PWY-6901	superpathway of glucose and xylose degradation
JO40_10925	PWY-7560	methylerythritol phosphate pathway II
JO40_10930	PWY-3821	galactose degradation III
JO40_10930	PWY-6317	galactose degradation I (Leloir pathway)
JO40_10930	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
JO40_10930	PWY-6527	stachyose degradation
JO40_10930	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
JO40_10930	PWY-7344	UDP-D-galactose biosynthesis
JO40_11200	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
JO40_11205	PWY-4261	glycerol degradation I
JO40_11235	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_11235	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
JO40_11240	PWY-6123	inosine-5'-phosphate biosynthesis I
JO40_11240	PWY-6124	inosine-5'-phosphate biosynthesis II
JO40_11240	PWY-7234	inosine-5'-phosphate biosynthesis III
JO40_11255	PWY-1042	glycolysis IV (plant cytosol)
JO40_11255	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_11255	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_11255	PWY-7385	1,3-propanediol biosynthesis (engineered)
JO40_11300	PWY-622	starch biosynthesis
JO40_11345	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
JO40_11345	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
JO40_11345	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
JO40_11365	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
JO40_11460	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
JO40_11460	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
JO40_11480	PWY-6038	citrate degradation
JO40_11505	PWY-7851	JO40_11505
JO40_11515	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
JO40_11515	PWY-6416	quinate degradation II
JO40_11515	PWY-6707	gallate biosynthesis
JO40_11520	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
JO40_11520	PWY-5723	Rubisco shunt
JO40_11665	PWY-5796	malonate decarboxylase activation
JO40_11780	PWY-7980	JO40_11780
JO40_11795	PWY-3461	L-tyrosine biosynthesis II
JO40_11795	PWY-3462	L-phenylalanine biosynthesis II
JO40_11795	PWY-6120	L-tyrosine biosynthesis III
JO40_11795	PWY-6627	salinosporamide A biosynthesis
JO40_11795	PWY-7626	bacilysin biosynthesis
JO40_11800	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
JO40_11800	PWY-6549	L-glutamine biosynthesis III
JO40_11800	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
JO40_11800	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
JO40_11810	PWY-6123	inosine-5'-phosphate biosynthesis I
JO40_11810	PWY-6124	inosine-5'-phosphate biosynthesis II
JO40_11810	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
JO40_11810	PWY-7234	inosine-5'-phosphate biosynthesis III
JO40_11875	PWY-1042	glycolysis IV (plant cytosol)
JO40_11875	PWY-5484	glycolysis II (from fructose 6-phosphate)
JO40_11875	PWY-6901	superpathway of glucose and xylose degradation
JO40_11875	PWY-7003	glycerol degradation to butanol
JO40_11920	PWY-7805	JO40_11920
JO40_11920	PWY-7807	JO40_11920
JO40_12025	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_12025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_12025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
JO40_12170	PWY-6527	stachyose degradation
JO40_12190	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JO40_12190	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JO40_12195	PWY-2781	<i>cis</i>-zeatin biosynthesis
JO40_12245	PWY-6317	galactose degradation I (Leloir pathway)
JO40_12260	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_12260	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_12260	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_12260	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_12265	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_12265	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
JO40_12320	PWY-6749	CMP-legionaminate biosynthesis I
JO40_12800	PWY-622	starch biosynthesis
JO40_12800	PWY-7902	JO40_12800
JO40_12895	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_12895	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JO40_12895	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JO40_12960	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_12960	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JO40_12960	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JO40_12965	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
JO40_12965	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
JO40_12965	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
JO40_13020	PWY-7560	methylerythritol phosphate pathway II
JO40_13180	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
JO40_13180	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
JO40_13180	PWY-7953	JO40_13180
JO40_13190	PWY-5941	glycogen degradation II (eukaryotic)
JO40_13190	PWY-6724	starch degradation II
JO40_13190	PWY-6737	starch degradation V
JO40_13190	PWY-7238	sucrose biosynthesis II
JO40_13290	PWY-7980	JO40_13290
JO40_13375	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
JO40_13375	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
JO40_13375	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
JO40_13375	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
