JO40_00025	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
JO40_00025	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
JO40_00050	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO40_00130	SM00257	Lysin motif
JO40_00175	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_00175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_00210	SM00382	ATPases associated with a variety of cellular activities
JO40_00215	SM00382	ATPases associated with a variety of cellular activities
JO40_00235	SM00900	JO40_00235
JO40_00285	SM00382	ATPases associated with a variety of cellular activities
JO40_00290	SM00382	ATPases associated with a variety of cellular activities
JO40_00320	SM00382	ATPases associated with a variety of cellular activities
JO40_00345	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_00345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_00365	SM00091	PAS domain
JO40_00365	SM00382	ATPases associated with a variety of cellular activities
JO40_00390	SM00838	Elongation factor G C-terminus
JO40_00390	SM00889	Elongation factor G, domain IV
JO40_00415	SM00890	Domain of unknown function
JO40_00470	SM00382	ATPases associated with a variety of cellular activities
JO40_00680	SM00316	Ribosomal protein S1-like RNA-binding domain
JO40_00680	SM00732	Likely ribonuclease with RNase H fold.
JO40_00690	SM00382	ATPases associated with a variety of cellular activities
JO40_00700	SM00853	MutL C terminal dimerisation domain
JO40_00700	SM01340	JO40_00700
JO40_00705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_00705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_00710	SM00387	Histidine kinase-like ATPases
JO40_00710	SM00388	His Kinase A (phosphoacceptor) domain
JO40_00710	SM00448	cheY-homologous receiver domain
JO40_00715	SM00448	cheY-homologous receiver domain
JO40_00750	SM00663	RNA polymerase I subunit A N-terminus
JO40_00780	SM00649	Ribosomal protein L11/L12
JO40_00785	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
JO40_00785	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
JO40_00820	SM00382	ATPases associated with a variety of cellular activities
JO40_00870	SM00382	ATPases associated with a variety of cellular activities
JO40_00875	SM00382	ATPases associated with a variety of cellular activities
JO40_00910	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JO40_00910	SM00478	endonuclease III
JO40_00910	SM00525	JO40_00910
JO40_00915	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_00920	SM00849	Metallo-beta-lactamase superfamily
JO40_00950	SM00382	ATPases associated with a variety of cellular activities
JO40_00975	SM00342	helix_turn_helix, arabinose operon control protein
JO40_00985	SM00382	ATPases associated with a variety of cellular activities
JO40_01040	SM00382	ATPases associated with a variety of cellular activities
JO40_01060	SM00382	ATPases associated with a variety of cellular activities
JO40_01095	SM00487	DEAD-like helicases superfamily
JO40_01095	SM00490	helicase superfamily c-terminal domain
JO40_01100	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
JO40_01120	SM00382	ATPases associated with a variety of cellular activities
JO40_01125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_01125	SM00331	Sigma factor PP2C-like phosphatases
JO40_01140	SM00434	DNA Topoisomerase IV
JO40_01180	SM00382	ATPases associated with a variety of cellular activities
JO40_01180	SM01086	C-terminal, D2-small domain, of ClpB protein
JO40_01200	SM00382	ATPases associated with a variety of cellular activities
JO40_01200	SM00464	Found in ATP-dependent protease La (LON)
JO40_01255	SM00890	Domain of unknown function
JO40_01310	SM01192	JO40_01310
JO40_01310	SM01193	JO40_01310
JO40_01385	SM00014	Acid phosphatase homologues
JO40_01415	SM00470	ParB-like nuclease domain
JO40_01440	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
JO40_01450	SM00937	JO40_01450
JO40_01490	SM01228	JO40_01490
JO40_01515	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO40_01515	SM00382	ATPases associated with a variety of cellular activities
JO40_01565	SM00986	Uracil DNA glycosylase superfamily
JO40_01565	SM00987	UreE urease accessory protein, C-terminal domain 
JO40_01570	SM00487	DEAD-like helicases superfamily
JO40_01570	SM00490	helicase superfamily c-terminal domain
JO40_01580	SM01387	JO40_01580
JO40_01585	SM00316	Ribosomal protein S1-like RNA-binding domain
JO40_01585	SM00322	K homology RNA-binding domain
JO40_01660	SM01058	CarD-like/TRCF domain
JO40_01690	SM00028	Tetratricopeptide repeats
JO40_01705	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO40_01715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_01750	SM00487	DEAD-like helicases superfamily
JO40_01750	SM00490	helicase superfamily c-terminal domain
JO40_01770	SM00248	ankyrin repeats
JO40_01785	SM00028	Tetratricopeptide repeats
JO40_01820	SM00382	ATPases associated with a variety of cellular activities
JO40_01825	SM00966	SpoVT / AbrB like domain 
JO40_01835	SM00244	prohibitin homologues
JO40_01840	SM00244	prohibitin homologues
JO40_01855	SM00382	ATPases associated with a variety of cellular activities
JO40_01860	SM00382	ATPases associated with a variety of cellular activities
JO40_01865	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
JO40_01880	SM00028	Tetratricopeptide repeats
JO40_01905	SM00382	ATPases associated with a variety of cellular activities
JO40_01950	SM00900	JO40_01950
JO40_01970	SM00327	von Willebrand factor (vWF) type A domain
JO40_02010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_02010	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_02035	SM00448	cheY-homologous receiver domain
JO40_02040	SM01007	Class II Aldolase and Adducin N-terminal domain
JO40_02060	SM00363	S4 RNA-binding domain
JO40_02095	SM01325	JO40_02095
JO40_02195	SM00662	RNA polymerases D
JO40_02250	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
JO40_02255	SM01374	JO40_02255
JO40_02275	SM00322	K homology RNA-binding domain
JO40_02290	SM01382	JO40_02290
JO40_02290	SM01383	JO40_02290
JO40_02310	SM01403	JO40_02310
JO40_02340	SM00487	DEAD-like helicases superfamily
JO40_02340	SM00490	helicase superfamily c-terminal domain
JO40_02370	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_02375	SM00382	ATPases associated with a variety of cellular activities
JO40_02405	SM00450	Rhodanese Homology Domain
JO40_02420	SM01126	JO40_02420
JO40_02465	SM00382	ATPases associated with a variety of cellular activities
JO40_02500	SM00448	cheY-homologous receiver domain
JO40_02505	SM00138	Methyltransferase, chemotaxis proteins 
JO40_02520	SM00382	ATPases associated with a variety of cellular activities
JO40_02540	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_02540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_02555	SM00382	ATPases associated with a variety of cellular activities
JO40_02560	SM00382	ATPases associated with a variety of cellular activities
JO40_02580	SM00331	Sigma factor PP2C-like phosphatases
JO40_02585	SM00331	Sigma factor PP2C-like phosphatases
JO40_02590	SM00271	DnaJ molecular chaperone homology domain
JO40_02630	SM00382	ATPases associated with a variety of cellular activities
JO40_02655	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_02670	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_02670	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_02715	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
JO40_02730	SM00822	JO40_02730
JO40_02775	SM00878	Biotin carboxylase C-terminal domain
JO40_02810	SM00382	ATPases associated with a variety of cellular activities
JO40_02860	SM00845	GatB domain
JO40_02950	SM00248	ankyrin repeats
JO40_03010	SM00382	ATPases associated with a variety of cellular activities
JO40_03020	SM01040	BRO family, N-terminal domain
JO40_03025	SM00028	Tetratricopeptide repeats
JO40_03080	SM00860	SMI1 / KNR4 family
JO40_03110	SM00248	ankyrin repeats
JO40_03125	SM00460	Transglutaminase/protease-like homologues
JO40_03210	SM00382	ATPases associated with a variety of cellular activities
JO40_03215	SM00382	ATPases associated with a variety of cellular activities
JO40_03280	SM00382	ATPases associated with a variety of cellular activities
JO40_03285	SM00382	ATPases associated with a variety of cellular activities
JO40_03295	SM00028	Tetratricopeptide repeats
JO40_03300	SM00481	DNA polymerase alpha chain like domain
JO40_03365	SM00448	cheY-homologous receiver domain
JO40_03365	SM00862	Transcriptional regulatory protein, C terminal
JO40_03375	SM00387	Histidine kinase-like ATPases
JO40_03375	SM00388	His Kinase A (phosphoacceptor) domain
JO40_03380	SM00382	ATPases associated with a variety of cellular activities
JO40_03400	SM00382	ATPases associated with a variety of cellular activities
JO40_03405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JO40_03410	SM00382	ATPases associated with a variety of cellular activities
JO40_03465	SM01240	JO40_03465
JO40_03485	SM00028	Tetratricopeptide repeats
JO40_03545	SM00529	Helix-turn-helix diphteria tox regulatory element
JO40_03580	SM00642	Alpha-amylase domain
JO40_03595	SM00382	ATPases associated with a variety of cellular activities
JO40_03635	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO40_03635	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_03645	SM00834	Putative regulatory protein
JO40_03705	SM00382	ATPases associated with a variety of cellular activities
JO40_03740	SM00382	ATPases associated with a variety of cellular activities
JO40_03745	SM00382	ATPases associated with a variety of cellular activities
JO40_03785	SM00382	ATPases associated with a variety of cellular activities
JO40_03805	SM00903	Flavin reductase like domain
JO40_03900	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO40_03920	SM00382	ATPases associated with a variety of cellular activities
JO40_03925	SM00382	ATPases associated with a variety of cellular activities
JO40_03945	SM00829	Enoylreductase
JO40_03990	SM01221	JO40_03990
JO40_03990	SM01222	JO40_03990
JO40_04005	SM00382	ATPases associated with a variety of cellular activities
JO40_04020	SM00387	Histidine kinase-like ATPases
JO40_04025	SM00421	helix_turn_helix, Lux Regulon
JO40_04025	SM00448	cheY-homologous receiver domain
JO40_04030	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_04035	SM00450	Rhodanese Homology Domain
JO40_04100	SM00487	DEAD-like helicases superfamily
JO40_04115	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_04200	SM01018	B12 binding domain
JO40_04205	SM01400	JO40_04205
JO40_04210	SM00382	ATPases associated with a variety of cellular activities
JO40_04215	SM00382	ATPases associated with a variety of cellular activities
JO40_04220	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_04220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_04225	SM00849	Metallo-beta-lactamase superfamily
JO40_04265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_04265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_04270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_04325	SM00052	Putative diguanylate phosphodiesterase
JO40_04325	SM00267	diguanylate cyclase
JO40_04365	SM00382	ATPases associated with a variety of cellular activities
JO40_04385	SM00322	K homology RNA-binding domain
JO40_04385	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_04400	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_04405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JO40_04410	SM00382	ATPases associated with a variety of cellular activities
JO40_04450	SM00506	Appr-1"-p processing enzyme
JO40_04455	SM00480	DNA polymerase III beta subunit
JO40_04580	SM00028	Tetratricopeptide repeats
JO40_04610	SM00487	DEAD-like helicases superfamily
JO40_04610	SM00490	helicase superfamily c-terminal domain
JO40_04675	SM00382	ATPases associated with a variety of cellular activities
JO40_04680	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_04680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_04725	SM00838	Elongation factor G C-terminus
JO40_04725	SM00889	Elongation factor G, domain IV
JO40_04745	SM00434	DNA Topoisomerase IV
JO40_04750	SM01091	Transporter associated domain
JO40_04795	SM00487	DEAD-like helicases superfamily
JO40_04795	SM00490	helicase superfamily c-terminal domain
JO40_04825	SM00966	SpoVT / AbrB like domain 
JO40_04830	SM00382	ATPases associated with a variety of cellular activities
JO40_04840	SM01091	Transporter associated domain
JO40_04845	SM01091	Transporter associated domain
JO40_04850	SM00938	Nitrogen regulatory protein P-II
JO40_04860	SM00341	Helicase and RNase D C-terminal
JO40_04860	SM00487	DEAD-like helicases superfamily
JO40_04860	SM00490	helicase superfamily c-terminal domain
JO40_04860	SM00956	JO40_04860
JO40_04865	SM00507	HNH nucleases
JO40_04890	SM00382	ATPases associated with a variety of cellular activities
JO40_04940	SM00382	ATPases associated with a variety of cellular activities
JO40_04950	SM00382	ATPases associated with a variety of cellular activities
JO40_04960	SM00267	diguanylate cyclase
JO40_04980	SM00840	JO40_04980
JO40_04995	SM00460	Transglutaminase/protease-like homologues
JO40_05030	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_05060	SM00967	RNA 2'-O ribose methyltransferase substrate binding
JO40_05095	SM00382	ATPases associated with a variety of cellular activities
JO40_05140	SM00935	Outer membrane protein (OmpH-like)
JO40_05145	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
JO40_05145	SM00534	ATPase domain of DNA mismatch repair MUTS family
JO40_05155	SM00382	ATPases associated with a variety of cellular activities
JO40_05170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_05170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_05205	SM00812	Alpha-L-fucosidase
JO40_05240	SM00825	Beta-ketoacyl synthase
JO40_05245	SM00966	SpoVT / AbrB like domain 
JO40_05260	SM00382	ATPases associated with a variety of cellular activities
JO40_05275	SM00642	Alpha-amylase domain
JO40_05280	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_05310	SM00382	ATPases associated with a variety of cellular activities
JO40_05395	SM00382	ATPases associated with a variety of cellular activities
JO40_05405	SM00257	Lysin motif
JO40_05460	SM00382	ATPases associated with a variety of cellular activities
JO40_05465	SM00382	ATPases associated with a variety of cellular activities
JO40_05545	SM00382	ATPases associated with a variety of cellular activities
JO40_05620	SM00382	ATPases associated with a variety of cellular activities
JO40_05695	SM00382	ATPases associated with a variety of cellular activities
JO40_05730	SM00506	Appr-1"-p processing enzyme
JO40_05750	SM00267	diguanylate cyclase
JO40_05755	SM01160	JO40_05755
JO40_05815	SM00382	ATPases associated with a variety of cellular activities
JO40_05815	SM00962	SRP54-type protein, GTPase domain
JO40_05925	SM00028	Tetratricopeptide repeats
JO40_05950	SM00257	Lysin motif
JO40_06000	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_06000	SM00267	diguanylate cyclase
JO40_06005	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_06005	SM00267	diguanylate cyclase
JO40_06025	SM00387	Histidine kinase-like ATPases
JO40_06025	SM00433	TopoisomeraseII
JO40_06030	SM00382	ATPases associated with a variety of cellular activities
JO40_06030	SM00760	Bacterial dnaA protein helix-turn-helix domain
JO40_06035	SM00382	ATPases associated with a variety of cellular activities
JO40_06080	SM00382	ATPases associated with a variety of cellular activities
JO40_06155	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
JO40_06220	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_06240	SM01133	JO40_06240
JO40_06245	SM00829	Enoylreductase
JO40_06255	SM00904	Riboflavin kinase
JO40_06280	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_06280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_06290	SM00382	ATPases associated with a variety of cellular activities
JO40_06300	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_06310	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_06360	SM01409	JO40_06360
JO40_06375	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO40_06375	SM01080	JO40_06375
JO40_06440	SM00028	Tetratricopeptide repeats
JO40_06445	SM00028	Tetratricopeptide repeats
JO40_06455	SM00028	Tetratricopeptide repeats
JO40_06460	SM00028	Tetratricopeptide repeats
JO40_06470	SM00028	Tetratricopeptide repeats
JO40_06480	SM00028	Tetratricopeptide repeats
JO40_06490	SM00487	DEAD-like helicases superfamily
JO40_06490	SM00490	helicase superfamily c-terminal domain
JO40_06500	SM00567	E-Z type HEAT repeats
JO40_06525	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_06550	SM00060	Fibronectin type 3 domain
JO40_06555	SM00028	Tetratricopeptide repeats
JO40_06560	SM01133	JO40_06560
JO40_06570	SM00382	ATPases associated with a variety of cellular activities
JO40_06590	SM00116	Domain in cystathionine beta-synthase and other proteins.
JO40_06590	SM00924	MgtE intracellular N domain
JO40_06645	SM00327	von Willebrand factor (vWF) type A domain
JO40_06650	SM00382	ATPases associated with a variety of cellular activities
JO40_06655	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_06675	SM00487	DEAD-like helicases superfamily
JO40_06710	SM00981	JO40_06710
JO40_06740	SM00382	ATPases associated with a variety of cellular activities
JO40_06750	SM00382	ATPases associated with a variety of cellular activities
JO40_06755	SM00382	ATPases associated with a variety of cellular activities
JO40_06825	SM00382	ATPases associated with a variety of cellular activities
JO40_06830	SM00382	ATPases associated with a variety of cellular activities
JO40_06835	SM00363	S4 RNA-binding domain
JO40_06850	SM00382	ATPases associated with a variety of cellular activities
JO40_06895	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
JO40_06935	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO40_06935	SM01080	JO40_06935
JO40_06965	SM00883	Chaperonin 10 Kd subunit
JO40_07005	SM00838	Elongation factor G C-terminus
JO40_07005	SM00889	Elongation factor G, domain IV
JO40_07045	SM00487	DEAD-like helicases superfamily
JO40_07190	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_07200	SM00487	DEAD-like helicases superfamily
JO40_07255	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_07285	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_07290	SM00028	Tetratricopeptide repeats
JO40_07295	SM00481	DNA polymerase alpha chain like domain
JO40_07330	SM01323	JO40_07330
JO40_07355	SM01001	AIR carboxylase
JO40_07390	SM00382	ATPases associated with a variety of cellular activities
JO40_07435	SM00855	Phosphoglycerate mutase family
JO40_07440	SM00465	GIY-YIG type nucleases (URI domain)
JO40_07455	SM00903	Flavin reductase like domain
JO40_07485	SM00257	Lysin motif
JO40_07535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_07535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_07585	SM00382	ATPases associated with a variety of cellular activities
JO40_07675	SM00062	Bacterial periplasmic substrate-binding proteins
JO40_07680	SM00062	Bacterial periplasmic substrate-binding proteins
JO40_07680	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
JO40_07690	SM00382	ATPases associated with a variety of cellular activities
JO40_07690	SM00962	SRP54-type protein, GTPase domain
JO40_07690	SM00963	SRP54-type protein, helical bundle domain
JO40_07700	SM00316	Ribosomal protein S1-like RNA-binding domain
JO40_07705	SM00271	DnaJ molecular chaperone homology domain
JO40_07725	SM00909	Sporulation and spore germination
JO40_07730	SM00316	Ribosomal protein S1-like RNA-binding domain
JO40_07735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO40_07735	SM00382	ATPases associated with a variety of cellular activities
JO40_07740	SM00028	Tetratricopeptide repeats
JO40_07755	SM00052	Putative diguanylate phosphodiesterase
JO40_07755	SM00267	diguanylate cyclase
JO40_07765	SM00028	Tetratricopeptide repeats
JO40_07800	SM00710	Parallel beta-helix repeats
JO40_07815	SM00382	ATPases associated with a variety of cellular activities
JO40_07840	SM00382	ATPases associated with a variety of cellular activities
JO40_07840	SM01086	C-terminal, D2-small domain, of ClpB protein
JO40_07875	SM00841	Elongation factor P, C-terminal
JO40_07875	SM01185	JO40_07875
JO40_07910	SM00271	DnaJ molecular chaperone homology domain
JO40_07945	SM00836	DALR anticodon binding domain
JO40_07945	SM01016	Arginyl tRNA synthetase N terminal dom
JO40_08080	SM00382	ATPases associated with a variety of cellular activities
JO40_08090	SM00382	ATPases associated with a variety of cellular activities
JO40_08095	SM00382	ATPases associated with a variety of cellular activities
JO40_08120	SM00382	ATPases associated with a variety of cellular activities
JO40_08125	SM00382	ATPases associated with a variety of cellular activities
JO40_08130	SM00382	ATPases associated with a variety of cellular activities
JO40_08210	SM00382	ATPases associated with a variety of cellular activities
JO40_08215	SM00382	ATPases associated with a variety of cellular activities
JO40_08255	SM00563	Phosphate acyltransferases
JO40_08310	SM00248	ankyrin repeats
JO40_08335	SM00919	Malic enzyme, NAD binding domain
JO40_08335	SM01274	JO40_08335
JO40_08365	SM00382	ATPases associated with a variety of cellular activities
JO40_08370	SM00382	ATPases associated with a variety of cellular activities
JO40_08375	SM00849	Metallo-beta-lactamase superfamily
JO40_08390	SM00650	Ribosomal RNA adenine dimethylases
JO40_08440	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JO40_08450	SM00028	Tetratricopeptide repeats
JO40_08490	SM00855	Phosphoglycerate mutase family
JO40_08565	SM00382	ATPases associated with a variety of cellular activities
JO40_08570	SM00382	ATPases associated with a variety of cellular activities
JO40_08590	SM01120	JO40_08590
JO40_08705	SM00028	Tetratricopeptide repeats
JO40_08710	SM00028	Tetratricopeptide repeats
JO40_08775	SM00881	CoA binding domain
JO40_08780	SM00861	Transketolase, pyrimidine binding domain
JO40_08840	SM00028	Tetratricopeptide repeats
JO40_08845	SM00257	Lysin motif
JO40_08995	SM00849	Metallo-beta-lactamase superfamily
JO40_09000	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_09035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_09040	SM00463	Small MutS-related domain
JO40_09050	SM00028	Tetratricopeptide repeats
JO40_09055	SM00327	von Willebrand factor (vWF) type A domain
JO40_09080	SM00028	Tetratricopeptide repeats
JO40_09085	SM00116	Domain in cystathionine beta-synthase and other proteins.
JO40_09085	SM01091	Transporter associated domain
JO40_09095	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_09170	SM00491	JO40_09170
JO40_09175	SM00563	Phosphate acyltransferases
JO40_09200	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO40_09200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO40_09260	SM00382	ATPases associated with a variety of cellular activities
JO40_09260	SM00448	cheY-homologous receiver domain
JO40_09275	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO40_09315	SM00530	Helix-turn-helix XRE-family like proteins 
JO40_09335	SM00829	Enoylreductase
JO40_09340	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_09365	SM00849	Metallo-beta-lactamase superfamily
JO40_09370	SM00420	helix_turn_helix, Deoxyribose operon repressor
JO40_09385	SM00382	ATPases associated with a variety of cellular activities
JO40_09395	SM00342	helix_turn_helix, arabinose operon control protein
JO40_09400	SM00382	ATPases associated with a variety of cellular activities
JO40_09425	SM00382	ATPases associated with a variety of cellular activities
JO40_09475	SM00487	DEAD-like helicases superfamily
JO40_09475	SM00490	helicase superfamily c-terminal domain
JO40_09485	SM00955	JO40_09485
JO40_09530	SM00382	ATPases associated with a variety of cellular activities
JO40_09555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
JO40_09565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO40_09570	SM00363	S4 RNA-binding domain
JO40_09650	SM00382	ATPases associated with a variety of cellular activities
JO40_09660	SM01211	JO40_09660
JO40_09670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_09745	SM00382	ATPases associated with a variety of cellular activities
JO40_09845	SM00984	UDP binding domain
JO40_09990	SM00849	Metallo-beta-lactamase superfamily
JO40_09990	SM01027	Beta-Casp domain
JO40_10005	SM00382	ATPases associated with a variety of cellular activities
JO40_10015	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO40_10015	SM00245	tail specific protease
JO40_10070	SM01264	JO40_10070
JO40_10080	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JO40_10145	SM00244	prohibitin homologues
JO40_10155	SM00382	ATPases associated with a variety of cellular activities
JO40_10325	SM00966	SpoVT / AbrB like domain 
JO40_10410	SM00028	Tetratricopeptide repeats
JO40_10415	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_10465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_10490	SM00271	DnaJ molecular chaperone homology domain
JO40_10605	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_10615	SM00347	helix_turn_helix multiple antibiotic resistance protein
JO40_10640	SM00646	JO40_10640
JO40_10655	SM00028	Tetratricopeptide repeats
JO40_10655	SM00954	Region found in RelA / SpoT proteins
JO40_10665	SM00411	bacterial (prokaryotic) histone like domain
JO40_10710	SM00855	Phosphoglycerate mutase family
JO40_10735	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO40_10740	SM00382	ATPases associated with a variety of cellular activities
JO40_10750	SM00028	Tetratricopeptide repeats
JO40_10815	SM00382	ATPases associated with a variety of cellular activities
JO40_10815	SM00994	ClpX C4-type zinc finger
JO40_10815	SM01086	C-terminal, D2-small domain, of ClpB protein
JO40_10840	SM00347	helix_turn_helix multiple antibiotic resistance protein
JO40_10875	SM00382	ATPases associated with a variety of cellular activities
JO40_10885	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JO40_10910	SM00487	DEAD-like helicases superfamily
JO40_10910	SM00490	helicase superfamily c-terminal domain
JO40_10910	SM00847	Helicase associated domain (HA2)  Add an annotation
JO40_10925	SM00861	Transketolase, pyrimidine binding domain
JO40_11000	SM00100	Cyclic nucleotide-monophosphate binding domain
JO40_11005	SM00257	Lysin motif
JO40_11050	SM00028	Tetratricopeptide repeats
JO40_11085	SM00849	Metallo-beta-lactamase superfamily
JO40_11135	SM00858	JO40_11135
JO40_11145	SM00420	helix_turn_helix, Deoxyribose operon repressor
JO40_11145	SM01134	JO40_11145
JO40_11155	SM00028	Tetratricopeptide repeats
JO40_11215	SM00382	ATPases associated with a variety of cellular activities
JO40_11225	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JO40_11230	SM00957	SecA DEAD-like domain
JO40_11230	SM00958	SecA preprotein cross-linking domain
JO40_11240	SM00798	AICARFT/IMPCHase bienzyme
JO40_11240	SM00851	MGS-like domain
JO40_11250	SM00493	JO40_11250
JO40_11265	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_11335	SM00260	Two component signalling adaptor domain
JO40_11350	SM00382	ATPases associated with a variety of cellular activities
JO40_11355	SM00902	Iron hydrogenase small subunit
JO40_11355	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
JO40_11360	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
JO40_11380	SM00487	DEAD-like helicases superfamily
JO40_11380	SM00491	JO40_11380
JO40_11500	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
JO40_11500	SM00474	3'-5' exonuclease
JO40_11500	SM00475	5'-3' exonuclease
JO40_11500	SM00482	DNA polymerase A domain
JO40_11530	SM00740	JO40_11530
JO40_11550	SM00382	ATPases associated with a variety of cellular activities
JO40_11610	SM00901	JO40_11610
JO40_11630	SM00327	von Willebrand factor (vWF) type A domain
JO40_11670	SM00764	Citrate lyase ligase C-terminal domain
JO40_11700	SM00900	JO40_11700
JO40_11705	SM00382	ATPases associated with a variety of cellular activities
JO40_11745	SM00382	ATPases associated with a variety of cellular activities
JO40_11750	SM00382	ATPases associated with a variety of cellular activities
JO40_11780	SM00357	Cold shock protein domain
JO40_11780	SM00382	ATPases associated with a variety of cellular activities
JO40_11780	SM00959	Rho termination factor, N-terminal domain
JO40_11810	SM00998	Adenylosuccinate lyase C-terminus
JO40_11845	SM00448	cheY-homologous receiver domain
JO40_11855	SM00138	Methyltransferase, chemotaxis proteins 
JO40_11855	SM00260	Two component signalling adaptor domain
JO40_11860	SM00073	Histidine Phosphotransfer domain
JO40_11860	SM00260	Two component signalling adaptor domain
JO40_11860	SM00387	Histidine kinase-like ATPases
JO40_11860	SM01231	JO40_11860
JO40_11875	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
JO40_11975	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO40_12020	SM00244	prohibitin homologues
JO40_12035	SM00382	ATPases associated with a variety of cellular activities
JO40_12090	SM00740	JO40_12090
JO40_12150	SM00267	diguanylate cyclase
JO40_12285	SM00028	Tetratricopeptide repeats
JO40_12300	SM00400	zinc finger
JO40_12300	SM00493	JO40_12300
JO40_12325	SM00479	JO40_12325
JO40_12330	SM00382	ATPases associated with a variety of cellular activities
JO40_12345	SM00487	DEAD-like helicases superfamily
JO40_12345	SM00490	helicase superfamily c-terminal domain
JO40_12365	SM00857	Resolvase, N terminal domain
JO40_12380	SM00382	ATPases associated with a variety of cellular activities
JO40_12390	SM00382	ATPases associated with a variety of cellular activities
JO40_12495	SM00028	Tetratricopeptide repeats
JO40_12620	SM00028	Tetratricopeptide repeats
JO40_12805	SM00382	ATPases associated with a variety of cellular activities
JO40_12805	SM01086	C-terminal, D2-small domain, of ClpB protein
JO40_12825	SM00382	ATPases associated with a variety of cellular activities
JO40_12840	SM00382	ATPases associated with a variety of cellular activities
JO40_12840	SM00962	SRP54-type protein, GTPase domain
JO40_12840	SM00963	SRP54-type protein, helical bundle domain
JO40_12855	SM00937	JO40_12855
JO40_12935	SM00382	ATPases associated with a variety of cellular activities
JO40_12940	SM00382	ATPases associated with a variety of cellular activities
JO40_12960	SM01209	JO40_12960
JO40_12960	SM01210	JO40_12960
JO40_12980	SM00028	Tetratricopeptide repeats
JO40_13025	SM00873	B3/4 domain
JO40_13025	SM00874	tRNA synthetase B5 domain
JO40_13125	SM00363	S4 RNA-binding domain
JO40_13125	SM01390	JO40_13125
JO40_13165	SM00382	ATPases associated with a variety of cellular activities
JO40_13220	SM00393	Putative single-stranded nucleic acids-binding domain
JO40_13220	SM01245	JO40_13220
JO40_13230	SM01234	JO40_13230
JO40_13255	SM00382	ATPases associated with a variety of cellular activities
JO40_13270	SM00529	Helix-turn-helix diphteria tox regulatory element
JO40_13280	SM00028	Tetratricopeptide repeats
JO40_13290	SM00382	ATPases associated with a variety of cellular activities
JO40_13325	SM00382	ATPases associated with a variety of cellular activities
JO40_13325	SM01086	C-terminal, D2-small domain, of ClpB protein
JO40_13340	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
JO40_13340	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
JO40_13340	SM00493	JO40_13340
JO40_13350	SM00028	Tetratricopeptide repeats
JO40_13360	SM00864	Tubulin/FtsZ family, GTPase domain
JO40_13360	SM00865	Tubulin/FtsZ family, C-terminal domain
JO40_13365	SM00842	Cell division protein FtsA
