locus-tag class description DYE49_00010 PF00072 Response regulator receiver domain DYE49_00015 PF09903 Uncharacterized protein conserved in bacteria (DUF2130) DYE49_00020 PF00563 EAL domain DYE49_00020 PF03707 Bacterial signalling protein N terminal repeat DYE49_00020 PF00990 Diguanylate cyclase, GGDEF domain DYE49_00025 PF00990 Diguanylate cyclase, GGDEF domain DYE49_00025 PF05230 MASE2 domain DYE49_00085 PF00563 EAL domain DYE49_00085 PF13185 GAF domain DYE49_00085 PF00990 Diguanylate cyclase, GGDEF domain DYE49_00110 PF02646 RmuC family DYE49_00125 PF00557 Metallopeptidase family M24 DYE49_00125 PF01321 Creatinase/Prolidase N-terminal domain DYE49_00130 PF01106 NifU-like domain DYE49_00135 PF06130 Phosphate propanoyltransferase DYE49_00150 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYE49_00150 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYE49_00150 PF02772 S-adenosylmethionine synthetase, central domain DYE49_00155 PF01276 Orn/Lys/Arg decarboxylase, major domain DYE49_00155 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DYE49_00165 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DYE49_00165 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DYE49_00190 PF00293 NUDIX domain DYE49_00200 PF02446 4-alpha-glucanotransferase DYE49_00210 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_00215 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_00220 PF02903 Alpha amylase, N-terminal ig-like domain DYE49_00220 PF00128 Alpha amylase, catalytic domain DYE49_00220 PF16657 Maltogenic Amylase, C-terminal domain DYE49_00225 PF00005 ABC transporter DYE49_00225 PF03459 TOBE domain DYE49_00225 PF17912 MalK OB fold domain DYE49_00250 PF00999 Sodium/hydrogen exchanger family DYE49_00255 PF01430 Hsp33 protein DYE49_00275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DYE49_00275 PF00056 lactate/malate dehydrogenase, NAD binding domain DYE49_00280 PF01293 Phosphoenolpyruvate carboxykinase DYE49_00285 PF08279 HTH domain DYE49_00285 PF03099 Biotin/lipoate A/B protein ligase family DYE49_00285 PF02237 Biotin protein ligase C terminal domain DYE49_00290 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DYE49_00295 PF00364 Biotin-requiring enzyme DYE49_00305 PF00364 Biotin-requiring enzyme DYE49_00305 PF00682 HMGL-like DYE49_00305 PF02436 Conserved carboxylase domain DYE49_00335 PF02127 Aminopeptidase I zinc metalloprotease (M18) DYE49_00340 PF01515 Phosphate acetyl/butaryl transferase DYE49_00345 PF08903 Domain of unknown function (DUF1846) DYE49_00350 PF01259 SAICAR synthetase DYE49_00370 PF01590 GAF domain DYE49_00370 PF00563 EAL domain DYE49_00370 PF00990 Diguanylate cyclase, GGDEF domain DYE49_00370 PF00360 Phytochrome region DYE49_00385 PF04055 Radical SAM superfamily DYE49_00385 PF01938 TRAM domain DYE49_00385 PF00919 Uncharacterized protein family UPF0004 DYE49_00410 PF04397 LytTr DNA-binding domain DYE49_00410 PF00072 Response regulator receiver domain DYE49_00415 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_00415 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_00415 PF14310 Fibronectin type III-like domain DYE49_00430 PF00156 Phosphoribosyl transferase domain DYE49_00435 PF03275 UDP-galactopyranose mutase DYE49_00445 PF09190 DALR domain DYE49_00445 PF01406 tRNA synthetases class I (C) catalytic domain DYE49_00450 PF00005 ABC transporter DYE49_00450 PF00664 ABC transporter transmembrane region DYE49_00455 PF00664 ABC transporter transmembrane region DYE49_00455 PF00005 ABC transporter DYE49_00460 PF04055 Radical SAM superfamily DYE49_00460 PF18693 TRAM domain DYE49_00460 PF00919 Uncharacterized protein family UPF0004 DYE49_00465 PF00135 Carboxylesterase family DYE49_00470 PF00255 Glutathione peroxidase DYE49_00475 PF00535 Glycosyl transferase family 2 DYE49_00480 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYE49_00500 PF08271 TFIIB zinc-binding DYE49_00530 PF00710 Asparaginase, N-terminal DYE49_00530 PF17763 Glutaminase/Asparaginase C-terminal domain DYE49_00535 PF05697 Bacterial trigger factor protein (TF) DYE49_00535 PF05698 Bacterial trigger factor protein (TF) C-terminus DYE49_00535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYE49_00540 PF00501 AMP-binding enzyme DYE49_00540 PF13193 AMP-binding enzyme C-terminal domain DYE49_00550 PF01740 STAS domain DYE49_00555 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DYE49_00555 PF07228 Stage II sporulation protein E (SpoIIE) DYE49_00580 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_00580 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_00580 PF14310 Fibronectin type III-like domain DYE49_00585 PF02954 Bacterial regulatory protein, Fis family DYE49_00585 PF00072 Response regulator receiver domain DYE49_00585 PF00158 Sigma-54 interaction domain DYE49_00595 PF13276 HTH-like domain DYE49_00595 PF13333 Integrase core domain DYE49_00595 PF00665 Integrase core domain DYE49_00615 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYE49_00615 PF00037 4Fe-4S binding domain DYE49_00615 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYE49_00620 PF00037 4Fe-4S binding domain DYE49_00620 PF02256 Iron hydrogenase small subunit DYE49_00620 PF02906 Iron only hydrogenase large subunit, C-terminal domain DYE49_00620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYE49_00660 PF01613 Flavin reductase like domain DYE49_00665 PF03853 YjeF-related protein N-terminus DYE49_00680 PF13614 AAA domain DYE49_00685 PF08546 Ketopantoate reductase PanE/ApbA C terminal DYE49_00685 PF02558 Ketopantoate reductase PanE/ApbA DYE49_00695 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYE49_00695 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYE49_00715 PF09364 XFP N-terminal domain DYE49_00715 PF09363 XFP C-terminal domain DYE49_00715 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DYE49_00720 PF00300 Histidine phosphatase superfamily (branch 1) DYE49_00725 PF00709 Adenylosuccinate synthetase DYE49_00730 PF00128 Alpha amylase, catalytic domain DYE49_00730 PF17999 Pullulanase N1-terminal domain DYE49_00730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYE49_00735 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYE49_00735 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYE49_00735 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYE49_00735 PF00703 Glycosyl hydrolases family 2 DYE49_00735 PF16355 Domain of unknown function (DUF4982) DYE49_00745 PF00005 ABC transporter DYE49_00750 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_00755 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYE49_00770 PF01545 Cation efflux family DYE49_00770 PF16916 Dimerisation domain of Zinc Transporter DYE49_00775 PF01047 MarR family DYE49_00780 PF00255 Glutathione peroxidase DYE49_00795 PF01479 S4 domain DYE49_00795 PF00849 RNA pseudouridylate synthase DYE49_00805 PF00155 Aminotransferase class I and II DYE49_00825 PF01266 FAD dependent oxidoreductase DYE49_00830 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYE49_00850 PF02272 DHHA1 domain DYE49_00850 PF01411 tRNA synthetases class II (A) DYE49_00850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYE49_00855 PF03652 Holliday junction resolvase DYE49_00865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYE49_00865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYE49_00880 PF00005 ABC transporter DYE49_00880 PF00664 ABC transporter transmembrane region DYE49_00885 PF00664 ABC transporter transmembrane region DYE49_00885 PF00005 ABC transporter DYE49_00890 PF17384 RimP C-terminal SH3 domain DYE49_00890 PF02576 RimP N-terminal domain DYE49_00895 PF08529 NusA N-terminal domain DYE49_00895 PF00575 S1 RNA binding domain DYE49_00895 PF13184 NusA-like KH domain DYE49_00910 PF00009 Elongation factor Tu GTP binding domain DYE49_00910 PF11987 Translation-initiation factor 2 DYE49_00910 PF04760 Translation initiation factor IF-2, N-terminal region DYE49_00915 PF02033 Ribosome-binding factor A DYE49_00920 PF01687 Riboflavin kinase DYE49_00920 PF06574 FAD synthetase DYE49_00925 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYE49_00925 PF09157 Pseudouridine synthase II TruB, C-terminal DYE49_00925 PF16198 tRNA pseudouridylate synthase B C-terminal domain DYE49_00930 PF00312 Ribosomal protein S15 DYE49_00945 PF01938 TRAM domain DYE49_00945 PF05958 tRNA (Uracil-5-)-methyltransferase DYE49_00950 PF07690 Major Facilitator Superfamily DYE49_00990 PF00924 Mechanosensitive ion channel DYE49_01000 PF12833 Helix-turn-helix domain DYE49_01000 PF07883 Cupin domain DYE49_01005 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_01005 PF14310 Fibronectin type III-like domain DYE49_01005 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_01020 PF04193 PQ loop repeat DYE49_01025 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYE49_01065 PF02237 Biotin protein ligase C terminal domain DYE49_01065 PF03099 Biotin/lipoate A/B protein ligase family DYE49_01065 PF08279 HTH domain DYE49_01070 PF00698 Acyl transferase domain DYE49_01075 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYE49_01080 PF01039 Carboxyl transferase domain DYE49_01080 PF17848 Acetyl-coA carboxylase zinc finger domain DYE49_01085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYE49_01085 PF00289 Biotin carboxylase, N-terminal domain DYE49_01085 PF02785 Biotin carboxylase C-terminal domain DYE49_01090 PF00364 Biotin-requiring enzyme DYE49_01095 PF00550 Phosphopantetheine attachment site DYE49_01105 PF07977 FabA-like domain DYE49_01115 PF02801 Beta-ketoacyl synthase, C-terminal domain DYE49_01115 PF00109 Beta-ketoacyl synthase, N-terminal domain DYE49_01120 PF00550 Phosphopantetheine attachment site DYE49_01130 PF02645 Uncharacterised protein, DegV family COG1307 DYE49_01160 PF02308 MgtC family DYE49_01165 PF00128 Alpha amylase, catalytic domain DYE49_01170 PF00486 Transcriptional regulatory protein, C terminal DYE49_01170 PF00072 Response regulator receiver domain DYE49_01175 PF18698 Histidine kinase sensor domain DYE49_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_01175 PF00512 His Kinase A (phospho-acceptor) domain DYE49_01175 PF00672 HAMP domain DYE49_01175 PF00989 PAS fold DYE49_01180 PF00478 IMP dehydrogenase / GMP reductase domain DYE49_01180 PF00571 CBS domain DYE49_01185 PF01741 Large-conductance mechanosensitive channel, MscL DYE49_01190 PF00085 Thioredoxin DYE49_01220 PF10609 NUBPL iron-transfer P-loop NTPase DYE49_01235 PF01368 DHH family DYE49_01235 PF02272 DHHA1 domain DYE49_01250 PF00871 Acetokinase family DYE49_01255 PF02806 Alpha amylase, C-terminal all-beta domain DYE49_01255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYE49_01255 PF00128 Alpha amylase, catalytic domain DYE49_01260 PF00343 Carbohydrate phosphorylase DYE49_01270 PF05698 Bacterial trigger factor protein (TF) C-terminus DYE49_01270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYE49_01270 PF05697 Bacterial trigger factor protein (TF) DYE49_01275 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_01275 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYE49_01275 PF05362 Lon protease (S16) C-terminal proteolytic domain DYE49_01280 PF01926 50S ribosome-binding GTPase DYE49_01285 PF00133 tRNA synthetases class I (I, L, M and V) DYE49_01285 PF08264 Anticodon-binding domain of tRNA DYE49_01285 PF10458 Valyl tRNA synthetase tRNA binding arm DYE49_01295 PF04002 RadC-like JAB domain DYE49_01325 PF02734 DAK2 domain DYE49_01325 PF13684 Dihydroxyacetone kinase family DYE49_01340 PF17191 RecG wedge domain DYE49_01340 PF00271 Helicase conserved C-terminal domain DYE49_01340 PF00270 DEAD/DEAH box helicase DYE49_01345 PF02504 Fatty acid synthesis protein DYE49_01350 PF00035 Double-stranded RNA binding motif DYE49_01350 PF14622 Ribonuclease-III-like DYE49_01355 PF02881 SRP54-type protein, helical bundle domain DYE49_01355 PF00448 SRP54-type protein, GTPase domain DYE49_01365 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DYE49_01370 PF02881 SRP54-type protein, helical bundle domain DYE49_01370 PF02978 Signal peptide binding domain DYE49_01370 PF00448 SRP54-type protein, GTPase domain DYE49_01380 PF01746 tRNA (Guanine-1)-methyltransferase DYE49_01385 PF01782 RimM N-terminal domain DYE49_01385 PF05239 PRC-barrel domain DYE49_01395 PF00886 Ribosomal protein S16 DYE49_01400 PF01245 Ribosomal protein L19 DYE49_01405 PF03946 Ribosomal protein L11, N-terminal domain DYE49_01405 PF00298 Ribosomal protein L11, RNA binding domain DYE49_01410 PF00687 Ribosomal protein L1p/L10e family DYE49_01415 PF00466 Ribosomal protein L10 DYE49_01420 PF16320 Ribosomal protein L7/L12 dimerisation domain DYE49_01420 PF00542 Ribosomal protein L7/L12 C-terminal domain DYE49_01425 PF00562 RNA polymerase Rpb2, domain 6 DYE49_01425 PF04560 RNA polymerase Rpb2, domain 7 DYE49_01425 PF04563 RNA polymerase beta subunit DYE49_01425 PF10385 RNA polymerase beta subunit external 1 domain DYE49_01425 PF04565 RNA polymerase Rpb2, domain 3 DYE49_01425 PF04561 RNA polymerase Rpb2, domain 2 DYE49_01430 PF04997 RNA polymerase Rpb1, domain 1 DYE49_01430 PF04983 RNA polymerase Rpb1, domain 3 DYE49_01430 PF04998 RNA polymerase Rpb1, domain 5 DYE49_01430 PF05000 RNA polymerase Rpb1, domain 4 DYE49_01430 PF00623 RNA polymerase Rpb1, domain 2 DYE49_01460 PF13173 AAA domain DYE49_01460 PF13635 Domain of unknown function (DUF4143) DYE49_01465 PF00990 Diguanylate cyclase, GGDEF domain DYE49_01470 PF00135 Carboxylesterase family DYE49_01485 PF02040 Arsenical pump membrane protein DYE49_01510 PF01145 SPFH domain / Band 7 family DYE49_01520 PF00005 ABC transporter DYE49_01520 PF00664 ABC transporter transmembrane region DYE49_01525 PF00664 ABC transporter transmembrane region DYE49_01525 PF00005 ABC transporter DYE49_01540 PF00258 Flavodoxin DYE49_01540 PF00753 Metallo-beta-lactamase superfamily DYE49_01545 PF00183 Hsp90 protein DYE49_01565 PF00230 Major intrinsic protein DYE49_01575 PF00294 pfkB family carbohydrate kinase DYE49_01580 PF01641 SelR domain DYE49_01580 PF01625 Peptide methionine sulfoxide reductase DYE49_01595 PF03309 Type III pantothenate kinase DYE49_01600 PF13597 Anaerobic ribonucleoside-triphosphate reductase DYE49_01600 PF03477 ATP cone domain DYE49_01645 PF03577 Peptidase family C69 DYE49_01665 PF00005 ABC transporter DYE49_01675 PF02661 Fic/DOC family DYE49_01680 PF00132 Bacterial transferase hexapeptide (six repeats) DYE49_01700 PF04397 LytTr DNA-binding domain DYE49_01700 PF00072 Response regulator receiver domain DYE49_01710 PF14310 Fibronectin type III-like domain DYE49_01710 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_01710 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_01720 PF14310 Fibronectin type III-like domain DYE49_01720 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_01720 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_01725 PF01966 HD domain DYE49_01745 PF01384 Phosphate transporter family DYE49_01760 PF00701 Dihydrodipicolinate synthetase family DYE49_01765 PF01113 Dihydrodipicolinate reductase, N-terminus DYE49_01765 PF05173 Dihydrodipicolinate reductase, C-terminus DYE49_01770 PF01678 Diaminopimelate epimerase DYE49_01775 PF00155 Aminotransferase class I and II DYE49_01780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYE49_01780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYE49_01785 PF00696 Amino acid kinase family DYE49_01785 PF03447 Homoserine dehydrogenase, NAD binding domain DYE49_01785 PF00742 Homoserine dehydrogenase DYE49_01795 PF01501 Glycosyl transferase family 8 DYE49_01800 PF00005 ABC transporter DYE49_01820 PF00318 Ribosomal protein S2 DYE49_01825 PF00889 Elongation factor TS DYE49_01830 PF00696 Amino acid kinase family DYE49_01835 PF01765 Ribosome recycling factor DYE49_01840 PF01255 Putative undecaprenyl diphosphate synthase DYE49_01850 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYE49_01850 PF13288 DXP reductoisomerase C-terminal domain DYE49_01850 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYE49_01855 PF17820 PDZ domain DYE49_01855 PF02163 Peptidase family M50 DYE49_01860 PF14480 DNA polymerase III polC-type N-terminus I DYE49_01860 PF11490 DNA polymerase III polC-type N-terminus II DYE49_01860 PF00929 Exonuclease DYE49_01860 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYE49_01860 PF02811 PHP domain DYE49_01860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYE49_01860 PF14579 Helix-hairpin-helix motif DYE49_01870 PF00120 Glutamine synthetase, catalytic domain DYE49_01870 PF12437 Glutamine synthetase type III N terminal DYE49_01870 PF18318 Glutamine synthetase C-terminal domain DYE49_01875 PF16363 GDP-mannose 4,6 dehydratase DYE49_01885 PF00152 tRNA synthetases class II (D, K and N) DYE49_01890 PF00814 Glycoprotease family DYE49_01900 PF00814 Glycoprotease family DYE49_01920 PF01966 HD domain DYE49_01935 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYE49_01940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DYE49_01940 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DYE49_01945 PF00288 GHMP kinases N terminal domain DYE49_01945 PF10509 Galactokinase galactose-binding signature DYE49_01945 PF08544 GHMP kinases C terminal DYE49_01950 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DYE49_01950 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DYE49_01955 PF01580 FtsK/SpoIIIE family DYE49_01955 PF09397 Ftsk gamma domain DYE49_01955 PF17854 FtsK alpha domain DYE49_01970 PF17999 Pullulanase N1-terminal domain DYE49_01970 PF00128 Alpha amylase, catalytic domain DYE49_01970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYE49_01980 PF00501 AMP-binding enzyme DYE49_01980 PF01553 Acyltransferase DYE49_02000 PF00483 Nucleotidyl transferase DYE49_02005 PF00483 Nucleotidyl transferase DYE49_02005 PF00132 Bacterial transferase hexapeptide (six repeats) DYE49_02010 PF00534 Glycosyl transferases group 1 DYE49_02010 PF08323 Starch synthase catalytic domain DYE49_02015 PF01783 Ribosomal L32p protein family DYE49_02030 PF04055 Radical SAM superfamily DYE49_02040 PF00069 Protein kinase domain DYE49_02040 PF03793 PASTA domain DYE49_02045 PF16745 RsgA N-terminal domain DYE49_02045 PF03193 RsgA GTPase DYE49_02060 PF00830 Ribosomal L28 family DYE49_02070 PF00171 Aldehyde dehydrogenase family DYE49_02070 PF00465 Iron-containing alcohol dehydrogenase DYE49_02095 PF00571 CBS domain DYE49_02095 PF01595 Cyclin M transmembrane N-terminal domain DYE49_02095 PF03471 Transporter associated domain DYE49_02100 PF01595 Cyclin M transmembrane N-terminal domain DYE49_02100 PF03471 Transporter associated domain DYE49_02100 PF00571 CBS domain DYE49_02110 PF13350 Tyrosine phosphatase family DYE49_02120 PF06874 Firmicute fructose-1,6-bisphosphatase DYE49_02125 PF01556 DnaJ C terminal domain DYE49_02125 PF00684 DnaJ central domain DYE49_02125 PF00226 DnaJ domain DYE49_02130 PF00012 Hsp70 protein DYE49_02135 PF01025 GrpE DYE49_02140 PF01628 HrcA protein C terminal domain DYE49_02145 PF02390 Putative methyltransferase DYE49_02150 PF01546 Peptidase family M20/M25/M40 DYE49_02155 PF03309 Type III pantothenate kinase DYE49_02170 PF03449 Transcription elongation factor, N-terminal DYE49_02170 PF01272 Transcription elongation factor, GreA/GreB, C-term DYE49_02180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYE49_02180 PF03129 Anticodon binding domain DYE49_02180 PF02824 TGS domain DYE49_02180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_02205 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_02205 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_02205 PF14310 Fibronectin type III-like domain DYE49_02255 PF02397 Bacterial sugar transferase DYE49_02270 PF01467 Cytidylyltransferase-like DYE49_02275 PF00266 Aminotransferase class-V DYE49_02305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYE49_02310 PF05523 WxcM-like, C-terminal DYE49_02320 PF16363 GDP-mannose 4,6 dehydratase DYE49_02325 PF04321 RmlD substrate binding domain DYE49_02330 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYE49_02335 PF00483 Nucleotidyl transferase DYE49_02345 PF02397 Bacterial sugar transferase DYE49_02355 PF13439 Glycosyltransferase Family 4 DYE49_02355 PF00534 Glycosyl transferases group 1 DYE49_02360 PF13439 Glycosyltransferase Family 4 DYE49_02360 PF00534 Glycosyl transferases group 1 DYE49_02365 PF13186 Iron-sulfur cluster-binding domain DYE49_02365 PF04055 Radical SAM superfamily DYE49_02375 PF00534 Glycosyl transferases group 1 DYE49_02405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYE49_02405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYE49_02410 PF01370 NAD dependent epimerase/dehydratase family DYE49_02415 PF00483 Nucleotidyl transferase DYE49_02420 PF08544 GHMP kinases C terminal DYE49_02420 PF10509 Galactokinase galactose-binding signature DYE49_02420 PF00288 GHMP kinases N terminal domain DYE49_02470 PF07238 PilZ domain DYE49_02470 PF00069 Protein kinase domain DYE49_02550 PF13635 Domain of unknown function (DUF4143) DYE49_02550 PF13173 AAA domain DYE49_02560 PF13635 Domain of unknown function (DUF4143) DYE49_02560 PF13173 AAA domain DYE49_02675 PF02397 Bacterial sugar transferase DYE49_02710 PF01593 Flavin containing amine oxidoreductase DYE49_02750 PF01966 HD domain DYE49_02760 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DYE49_02760 PF01297 Zinc-uptake complex component A periplasmic DYE49_02765 PF00005 ABC transporter DYE49_02770 PF00950 ABC 3 transport family DYE49_02780 PF01593 Flavin containing amine oxidoreductase DYE49_02785 PF02632 BioY family DYE49_02800 PF00132 Bacterial transferase hexapeptide (six repeats) DYE49_02805 PF00291 Pyridoxal-phosphate dependent enzyme DYE49_02830 PF00271 Helicase conserved C-terminal domain DYE49_02830 PF04851 Type III restriction enzyme, res subunit DYE49_02840 PF01368 DHH family DYE49_02840 PF02272 DHHA1 domain DYE49_02845 PF03948 Ribosomal protein L9, C-terminal domain DYE49_02845 PF01281 Ribosomal protein L9, N-terminal domain DYE49_02850 PF00772 DnaB-like helicase N terminal domain DYE49_02850 PF03796 DnaB-like helicase C terminal domain DYE49_02855 PF00753 Metallo-beta-lactamase superfamily DYE49_02860 PF02590 Predicted SPOUT methyltransferase DYE49_02870 PF00580 UvrD/REP helicase N-terminal domain DYE49_02870 PF13361 UvrD-like helicase C-terminal domain DYE49_02875 PF00533 BRCA1 C Terminus (BRCT) domain DYE49_02875 PF03120 NAD-dependent DNA ligase OB-fold domain DYE49_02875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DYE49_02875 PF01653 NAD-dependent DNA ligase adenylation domain DYE49_02875 PF12826 Helix-hairpin-helix motif DYE49_02885 PF01425 Amidase DYE49_02890 PF02934 GatB/GatE catalytic domain DYE49_02890 PF02637 GatB domain DYE49_02900 PF01702 Queuine tRNA-ribosyltransferase DYE49_02905 PF02547 Queuosine biosynthesis protein DYE49_02910 PF02677 Epoxyqueuosine reductase QueH DYE49_02920 PF13614 AAA domain DYE49_02935 PF01230 HIT domain DYE49_02940 PF00005 ABC transporter DYE49_02945 PF01458 Uncharacterized protein family (UPF0051) DYE49_02950 PF00266 Aminotransferase class-V DYE49_02955 PF01592 NifU-like N terminal domain DYE49_02960 PF01458 Uncharacterized protein family (UPF0051) DYE49_02965 PF01134 Glucose inhibited division protein A DYE49_02965 PF13932 GidA associated domain DYE49_02985 PF00795 Carbon-nitrogen hydrolase DYE49_02985 PF02540 NAD synthase DYE49_02990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYE49_02990 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYE49_02990 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DYE49_03000 PF00440 Bacterial regulatory proteins, tetR family DYE49_03020 PF16193 AAA C-terminal domain DYE49_03020 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYE49_03020 PF12002 MgsA AAA+ ATPase C terminal DYE49_03025 PF01048 Phosphorylase superfamily DYE49_03030 PF02580 D-Tyr-tRNA(Tyr) deacylase DYE49_03040 PF01165 Ribosomal protein S21 DYE49_03045 PF03315 Serine dehydratase beta chain DYE49_03045 PF03313 Serine dehydratase alpha chain DYE49_03055 PF02779 Transketolase, pyrimidine binding domain DYE49_03055 PF00456 Transketolase, thiamine diphosphate binding domain DYE49_03055 PF02780 Transketolase, C-terminal domain DYE49_03060 PF00588 SpoU rRNA Methylase family DYE49_03070 PF09180 Prolyl-tRNA synthetase, C-terminal DYE49_03070 PF03129 Anticodon binding domain DYE49_03070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_03080 PF00550 Phosphopantetheine attachment site DYE49_03125 PF00300 Histidine phosphatase superfamily (branch 1) DYE49_03135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYE49_03145 PF01649 Ribosomal protein S20 DYE49_03150 PF01791 DeoC/LacD family aldolase DYE49_03160 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DYE49_03160 PF00753 Metallo-beta-lactamase superfamily DYE49_03160 PF17770 Ribonuclease J C-terminal domain DYE49_03165 PF03372 Endonuclease/Exonuclease/phosphatase family DYE49_03175 PF04371 Porphyromonas-type peptidyl-arginine deiminase DYE49_03195 PF01116 Fructose-bisphosphate aldolase class-II DYE49_03205 PF16657 Maltogenic Amylase, C-terminal domain DYE49_03205 PF00128 Alpha amylase, catalytic domain DYE49_03210 PF00248 Aldo/keto reductase family DYE49_03215 PF04073 Aminoacyl-tRNA editing domain DYE49_03220 PF02911 Formyl transferase, C-terminal domain DYE49_03220 PF00551 Formyl transferase DYE49_03235 PF13188 PAS domain DYE49_03235 PF00990 Diguanylate cyclase, GGDEF domain DYE49_03235 PF03707 Bacterial signalling protein N terminal repeat DYE49_03235 PF00563 EAL domain DYE49_03240 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_03240 PF14310 Fibronectin type III-like domain DYE49_03240 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_03255 PF04397 LytTr DNA-binding domain DYE49_03255 PF00072 Response regulator receiver domain DYE49_03270 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_03270 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_03270 PF14310 Fibronectin type III-like domain DYE49_03285 PF00923 Transaldolase/Fructose-6-phosphate aldolase DYE49_03310 PF14310 Fibronectin type III-like domain DYE49_03310 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_03310 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_03315 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_03315 PF14310 Fibronectin type III-like domain DYE49_03315 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_03325 PF00072 Response regulator receiver domain DYE49_03325 PF04397 LytTr DNA-binding domain DYE49_03340 PF00011 Hsp20/alpha crystallin family DYE49_03345 PF14310 Fibronectin type III-like domain DYE49_03345 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_03345 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_03355 PF05552 Conserved TM helix DYE49_03355 PF00924 Mechanosensitive ion channel DYE49_03360 PF00672 HAMP domain DYE49_03360 PF01966 HD domain DYE49_03370 PF00990 Diguanylate cyclase, GGDEF domain DYE49_03370 PF17152 Periplasmic sensor domain DYE49_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_03425 PF00512 His Kinase A (phospho-acceptor) domain DYE49_03440 PF00301 Rubredoxin DYE49_03450 PF05552 Conserved TM helix DYE49_03450 PF00924 Mechanosensitive ion channel DYE49_03455 PF02645 Uncharacterised protein, DegV family COG1307 DYE49_03465 PF00338 Ribosomal protein S10p/S20e DYE49_03470 PF00297 Ribosomal protein L3 DYE49_03475 PF00573 Ribosomal protein L4/L1 family DYE49_03480 PF00276 Ribosomal protein L23 DYE49_03485 PF03947 Ribosomal Proteins L2, C-terminal domain DYE49_03485 PF00181 Ribosomal Proteins L2, RNA binding domain DYE49_03490 PF00203 Ribosomal protein S19 DYE49_03495 PF00237 Ribosomal protein L22p/L17e DYE49_03500 PF00189 Ribosomal protein S3, C-terminal domain DYE49_03500 PF07650 KH domain DYE49_03505 PF00252 Ribosomal protein L16p/L10e DYE49_03510 PF00831 Ribosomal L29 protein DYE49_03515 PF00366 Ribosomal protein S17 DYE49_03520 PF00238 Ribosomal protein L14p/L23e DYE49_03525 PF00467 KOW motif DYE49_03525 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYE49_03530 PF00281 Ribosomal protein L5 DYE49_03530 PF00673 ribosomal L5P family C-terminus DYE49_03535 PF00253 Ribosomal protein S14p/S29e DYE49_03540 PF00410 Ribosomal protein S8 DYE49_03545 PF00347 Ribosomal protein L6 DYE49_03550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYE49_03555 PF00333 Ribosomal protein S5, N-terminal domain DYE49_03555 PF03719 Ribosomal protein S5, C-terminal domain DYE49_03560 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYE49_03565 PF00344 SecY translocase DYE49_03570 PF05191 Adenylate kinase, active site lid DYE49_03575 PF00557 Metallopeptidase family M24 DYE49_03580 PF01176 Translation initiation factor 1A / IF-1 DYE49_03585 PF00444 Ribosomal protein L36 DYE49_03590 PF00416 Ribosomal protein S13/S18 DYE49_03595 PF00411 Ribosomal protein S11 DYE49_03600 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYE49_03600 PF01000 RNA polymerase Rpb3/RpoA insert domain DYE49_03600 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYE49_03605 PF01196 Ribosomal protein L17 DYE49_03610 PF02661 Fic/DOC family DYE49_03635 PF02224 Cytidylate kinase DYE49_03640 PF01926 50S ribosome-binding GTPase DYE49_03640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYE49_03645 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYE49_03645 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYE49_03650 PF00216 Bacterial DNA-binding protein DYE49_03655 PF01743 Poly A polymerase head domain DYE49_03655 PF13735 tRNA nucleotidyltransferase domain 2 putative DYE49_03655 PF12627 Probable RNA and SrmB- binding site of polymerase A DYE49_03665 PF00730 HhH-GPD superfamily base excision DNA repair protein DYE49_03665 PF10576 Iron-sulfur binding domain of endonuclease III DYE49_03665 PF00633 Helix-hairpin-helix motif DYE49_03670 PF02861 Clp amino terminal domain, pathogenicity island component DYE49_03670 PF17871 AAA lid domain DYE49_03670 PF07724 AAA domain (Cdc48 subfamily) DYE49_03670 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_03670 PF10431 C-terminal, D2-small domain, of ClpB protein DYE49_03680 PF00579 tRNA synthetases class I (W and Y) DYE49_03680 PF01479 S4 domain DYE49_03695 PF04055 Radical SAM superfamily DYE49_03695 PF06969 HemN C-terminal domain DYE49_03705 PF00009 Elongation factor Tu GTP binding domain DYE49_03705 PF03144 Elongation factor Tu domain 2 DYE49_03705 PF06421 GTP-binding protein LepA C-terminus DYE49_03705 PF00679 Elongation factor G C-terminus DYE49_03765 PF00005 ABC transporter DYE49_03780 PF01554 MatE DYE49_03785 PF00990 Diguanylate cyclase, GGDEF domain DYE49_03790 PF02645 Uncharacterised protein, DegV family COG1307 DYE49_03805 PF00145 C-5 cytosine-specific DNA methylase DYE49_03810 PF02976 DNA mismatch repair enzyme MutH DYE49_03825 PF00293 NUDIX domain DYE49_03835 PF13091 PLD-like domain DYE49_03835 PF13087 AAA domain DYE49_03875 PF04349 Periplasmic glucan biosynthesis protein, MdoG DYE49_03900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYE49_03900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYE49_03905 PF01979 Amidohydrolase family DYE49_03910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DYE49_03910 PF00117 Glutamine amidotransferase class-I DYE49_03915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYE49_03915 PF02142 MGS-like domain DYE49_03915 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYE49_03920 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DYE49_03920 PF00175 Oxidoreductase NAD-binding domain DYE49_03925 PF01180 Dihydroorotate dehydrogenase DYE49_03930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYE49_03935 PF00156 Phosphoribosyl transferase domain DYE49_03955 PF08191 LRR adjacent DYE49_03955 PF12354 Bacterial adhesion/invasion protein N terminal DYE49_03955 PF00746 LPXTG cell wall anchor motif DYE49_03955 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DYE49_03955 PF12799 Leucine Rich repeats (2 copies) DYE49_03960 PF00248 Aldo/keto reductase family DYE49_03970 PF00990 Diguanylate cyclase, GGDEF domain DYE49_04005 PF07726 ATPase family associated with various cellular activities (AAA) DYE49_04005 PF17863 AAA lid domain DYE49_04020 PF12450 von Willebrand factor DYE49_04020 PF00092 von Willebrand factor type A domain DYE49_04020 PF12034 Domain of unknown function (DUF3520) DYE49_04025 PF13419 Haloacid dehalogenase-like hydrolase DYE49_04035 PF00248 Aldo/keto reductase family DYE49_04045 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_04050 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_04055 PF00005 ABC transporter DYE49_04055 PF08402 TOBE domain DYE49_04060 PF00990 Diguanylate cyclase, GGDEF domain DYE49_04065 PF00255 Glutathione peroxidase DYE49_04085 PF01488 Shikimate / quinate 5-dehydrogenase DYE49_04085 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYE49_04085 PF08501 Shikimate dehydrogenase substrate binding domain DYE49_04095 PF13603 Leucyl-tRNA synthetase, Domain 2 DYE49_04095 PF00133 tRNA synthetases class I (I, L, M and V) DYE49_04095 PF08264 Anticodon-binding domain of tRNA DYE49_04095 PF09334 tRNA synthetases class I (M) DYE49_04100 PF00163 Ribosomal protein S4/S9 N-terminal domain DYE49_04100 PF01479 S4 domain DYE49_04130 PF00005 ABC transporter DYE49_04140 PF00005 ABC transporter DYE49_04160 PF03051 Peptidase C1-like family DYE49_04165 PF03051 Peptidase C1-like family DYE49_04170 PF00266 Aminotransferase class-V DYE49_04175 PF01171 PP-loop family DYE49_04185 PF09371 Tex-like protein N-terminal domain DYE49_04185 PF00575 S1 RNA binding domain DYE49_04185 PF17674 HHH domain DYE49_04185 PF16921 Tex protein YqgF-like domain DYE49_04200 PF01029 NusB family DYE49_04205 PF02601 Exonuclease VII, large subunit DYE49_04205 PF13742 OB-fold nucleic acid binding domain DYE49_04215 PF02779 Transketolase, pyrimidine binding domain DYE49_04215 PF02780 Transketolase, C-terminal domain DYE49_04215 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYE49_04220 PF13476 AAA domain DYE49_04225 PF00817 impB/mucB/samB family DYE49_04225 PF11799 impB/mucB/samB family C-terminal domain DYE49_04225 PF11798 IMS family HHH motif DYE49_04230 PF00589 Phage integrase family DYE49_04230 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_04235 PF01676 Metalloenzyme superfamily DYE49_04245 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_04245 PF14310 Fibronectin type III-like domain DYE49_04245 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_04255 PF04397 LytTr DNA-binding domain DYE49_04255 PF00072 Response regulator receiver domain DYE49_04260 PF01048 Phosphorylase superfamily DYE49_04270 PF01966 HD domain DYE49_04270 PF01467 Cytidylyltransferase-like DYE49_04275 PF01926 50S ribosome-binding GTPase DYE49_04285 PF03989 DNA gyrase C-terminal domain, beta-propeller DYE49_04285 PF00521 DNA gyrase/topoisomerase IV, subunit A DYE49_04290 PF01751 Toprim domain DYE49_04290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_04290 PF00204 DNA gyrase B DYE49_04290 PF00986 DNA gyrase B subunit, carboxyl terminus DYE49_04295 PF02660 Glycerol-3-phosphate acyltransferase DYE49_04300 PF03672 Uncharacterised protein family (UPF0154) DYE49_04305 PF01132 Elongation factor P (EF-P) OB domain DYE49_04305 PF08207 Elongation factor P (EF-P) KOW-like domain DYE49_04305 PF09285 Elongation factor P, C-terminal DYE49_04310 PF00471 Ribosomal protein L33 DYE49_04315 PF04551 GcpE protein DYE49_04325 PF00271 Helicase conserved C-terminal domain DYE49_04325 PF00270 DEAD/DEAH box helicase DYE49_04330 PF00152 tRNA synthetases class II (D, K and N) DYE49_04330 PF02938 GAD domain DYE49_04330 PF01336 OB-fold nucleic acid binding domain DYE49_04335 PF13393 Histidyl-tRNA synthetase DYE49_04335 PF03129 Anticodon binding domain DYE49_04340 PF02824 TGS domain DYE49_04340 PF04607 Region found in RelA / SpoT proteins DYE49_04340 PF13291 ACT domain DYE49_04345 PF00156 Phosphoribosyl transferase domain DYE49_04355 PF04542 Sigma-70 region 2 DYE49_04355 PF04545 Sigma-70, region 4 DYE49_04355 PF04539 Sigma-70 region 3 DYE49_04355 PF00140 Sigma-70 factor, region 1.2 DYE49_04365 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DYE49_04370 PF00140 Sigma-70 factor, region 1.2 DYE49_04370 PF04545 Sigma-70, region 4 DYE49_04370 PF03979 Sigma-70 factor, region 1.1 DYE49_04370 PF04539 Sigma-70 region 3 DYE49_04370 PF04542 Sigma-70 region 2 DYE49_04375 PF01807 CHC2 zinc finger DYE49_04375 PF08275 DNA primase catalytic core, N-terminal domain DYE49_04375 PF10410 DnaB-helicase binding domain of primase DYE49_04380 PF03129 Anticodon binding domain DYE49_04380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_04390 PF01926 50S ribosome-binding GTPase DYE49_04390 PF07650 KH domain DYE49_04395 PF02130 Uncharacterized protein family UPF0054 DYE49_04415 PF00391 PEP-utilising enzyme, mobile domain DYE49_04415 PF00224 Pyruvate kinase, barrel domain DYE49_04415 PF02887 Pyruvate kinase, alpha/beta domain DYE49_04420 PF00480 ROK family DYE49_04425 PF03129 Anticodon binding domain DYE49_04425 PF02824 TGS domain DYE49_04425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYE49_04425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_04430 PF02381 MraZ protein, putative antitoxin-like DYE49_04435 PF01795 MraW methylase family DYE49_04445 PF03483 B3/4 domain DYE49_04445 PF03484 tRNA synthetase B5 domain DYE49_04445 PF03147 Ferredoxin-fold anticodon binding domain DYE49_04445 PF01588 Putative tRNA binding domain DYE49_04445 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DYE49_04450 PF01409 tRNA synthetases class II core domain (F) DYE49_04450 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DYE49_04455 PF00091 Tubulin/FtsZ family, GTPase domain DYE49_04455 PF12327 FtsZ family, C-terminal domain DYE49_04475 PF17768 RecJ OB domain DYE49_04475 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DYE49_04475 PF01368 DHH family DYE49_04475 PF02272 DHHA1 domain DYE49_04480 PF07549 SecD/SecF GG Motif DYE49_04480 PF02355 Protein export membrane protein DYE49_04485 PF05491 RuvB C-terminal winged helix domain DYE49_04485 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYE49_04485 PF17864 RuvB AAA lid domain DYE49_04490 PF01330 RuvA N terminal domain DYE49_04490 PF07499 RuvA, C-terminal domain DYE49_04495 PF01926 50S ribosome-binding GTPase DYE49_04495 PF01018 GTP1/OBG DYE49_04495 PF09269 Domain of unknown function (DUF1967) DYE49_04500 PF01016 Ribosomal L27 protein DYE49_04505 PF04327 Cysteine protease Prp DYE49_04510 PF00829 Ribosomal prokaryotic L21 protein DYE49_04560 PF00293 NUDIX domain DYE49_04570 PF13393 Histidyl-tRNA synthetase DYE49_04580 PF03309 Type III pantothenate kinase DYE49_04585 PF03102 NeuB family DYE49_04585 PF08666 SAF domain DYE49_04605 PF01709 Transcriptional regulator DYE49_04610 PF02075 Crossover junction endodeoxyribonuclease RuvC DYE49_04615 PF01330 RuvA N terminal domain DYE49_04620 PF17864 RuvB AAA lid domain DYE49_04620 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYE49_04620 PF05491 RuvB C-terminal winged helix domain DYE49_04625 PF02547 Queuosine biosynthesis protein DYE49_04645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYE49_04650 PF02719 Polysaccharide biosynthesis protein DYE49_04670 PF00221 Aromatic amino acid lyase DYE49_04675 PF01027 Inhibitor of apoptosis-promoting Bax1 DYE49_04685 PF00330 Aconitase family (aconitate hydratase) DYE49_04700 PF01594 AI-2E family transporter DYE49_04705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_04705 PF02403 Seryl-tRNA synthetase N-terminal domain DYE49_04725 PF02463 RecF/RecN/SMC N terminal domain DYE49_04725 PF06470 SMC proteins Flexible Hinge Domain DYE49_04730 PF00270 DEAD/DEAH box helicase DYE49_04730 PF00271 Helicase conserved C-terminal domain DYE49_04735 PF13439 Glycosyltransferase Family 4 DYE49_04735 PF00534 Glycosyl transferases group 1 DYE49_04740 PF10431 C-terminal, D2-small domain, of ClpB protein DYE49_04740 PF06689 ClpX C4-type zinc finger DYE49_04740 PF07724 AAA domain (Cdc48 subfamily) DYE49_04745 PF00574 Clp protease DYE49_04750 PF05697 Bacterial trigger factor protein (TF) DYE49_04750 PF05698 Bacterial trigger factor protein (TF) C-terminus DYE49_04750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYE49_04790 PF07196 Flagellin hook IN motif DYE49_04790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYE49_04795 PF00669 Bacterial flagellin N-terminal helical region DYE49_04795 PF00700 Bacterial flagellin C-terminal helical region DYE49_04800 PF02623 FliW protein DYE49_04805 PF02599 Global regulator protein family DYE49_04810 PF00814 Glycoprotease family DYE49_04815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DYE49_04835 PF02465 Flagellar hook-associated protein 2 N-terminus DYE49_04835 PF07195 Flagellar hook-associated protein 2 C-terminus DYE49_04845 PF00700 Bacterial flagellin C-terminal helical region DYE49_04845 PF00669 Bacterial flagellin N-terminal helical region DYE49_04850 PF00669 Bacterial flagellin N-terminal helical region DYE49_04850 PF00700 Bacterial flagellin C-terminal helical region DYE49_04855 PF01725 Ham1 family DYE49_04875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYE49_04875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYE49_04890 PF03477 ATP cone domain DYE49_04900 PF00795 Carbon-nitrogen hydrolase DYE49_04905 PF08544 GHMP kinases C terminal DYE49_04905 PF10509 Galactokinase galactose-binding signature DYE49_04910 PF01975 Survival protein SurE DYE49_04930 PF00580 UvrD/REP helicase N-terminal domain DYE49_04930 PF13361 UvrD-like helicase C-terminal domain DYE49_04935 PF11799 impB/mucB/samB family C-terminal domain DYE49_04935 PF11798 IMS family HHH motif DYE49_04935 PF00817 impB/mucB/samB family DYE49_04955 PF02390 Putative methyltransferase DYE49_04960 PF01653 NAD-dependent DNA ligase adenylation domain DYE49_04960 PF03120 NAD-dependent DNA ligase OB-fold domain DYE49_04960 PF00533 BRCA1 C Terminus (BRCT) domain DYE49_04970 PF02272 DHHA1 domain DYE49_04970 PF17768 RecJ OB domain DYE49_04970 PF01368 DHH family DYE49_04970 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DYE49_04980 PF01192 RNA polymerase Rpb6 DYE49_04990 PF18698 Histidine kinase sensor domain DYE49_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_04990 PF00672 HAMP domain DYE49_04990 PF00989 PAS fold DYE49_04990 PF00512 His Kinase A (phospho-acceptor) domain DYE49_04995 PF00486 Transcriptional regulatory protein, C terminal DYE49_04995 PF00072 Response regulator receiver domain DYE49_05005 PF01618 MotA/TolQ/ExbB proton channel family DYE49_05010 PF13677 Membrane MotB of proton-channel complex MotA/MotB DYE49_05010 PF00691 OmpA family DYE49_05015 PF03748 Flagellar basal body-associated protein FliL DYE49_05020 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYE49_05020 PF02154 Flagellar motor switch protein FliM DYE49_05025 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYE49_05035 PF00813 FliP family DYE49_05040 PF01313 Bacterial export proteins, family 3 DYE49_05045 PF01311 Bacterial export proteins, family 1 DYE49_05050 PF01312 FlhB HrpN YscU SpaS Family DYE49_05055 PF00771 FHIPEP family DYE49_05060 PF00448 SRP54-type protein, GTPase domain DYE49_05065 PF10609 NUBPL iron-transfer P-loop NTPase DYE49_05075 PF04542 Sigma-70 region 2 DYE49_05075 PF04545 Sigma-70, region 4 DYE49_05075 PF04539 Sigma-70 region 3 DYE49_05095 PF01263 Aldose 1-epimerase DYE49_05100 PF01991 ATP synthase (E/31 kDa) subunit DYE49_05110 PF16886 ATPsynthase alpha/beta subunit N-term extension DYE49_05110 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYE49_05110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_05115 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYE49_05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_05120 PF01813 ATP synthase subunit D DYE49_05135 PF04551 GcpE protein DYE49_05150 PF02397 Bacterial sugar transferase DYE49_05155 PF00534 Glycosyl transferases group 1 DYE49_05155 PF13439 Glycosyltransferase Family 4 DYE49_05160 PF13439 Glycosyltransferase Family 4 DYE49_05160 PF00534 Glycosyl transferases group 1 DYE49_05170 PF00041 Fibronectin type III domain DYE49_05170 PF00704 Glycosyl hydrolases family 18 DYE49_05185 PF00483 Nucleotidyl transferase DYE49_05190 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DYE49_05195 PF02096 60Kd inner membrane protein DYE49_05195 PF14849 YidC periplasmic domain DYE49_05210 PF00672 HAMP domain DYE49_05210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_05220 PF00535 Glycosyl transferase family 2 DYE49_05245 PF00535 Glycosyl transferase family 2 DYE49_05250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYE49_05265 PF08323 Starch synthase catalytic domain DYE49_05265 PF00534 Glycosyl transferases group 1 DYE49_05275 PF00535 Glycosyl transferase family 2 DYE49_05275 PF01501 Glycosyl transferase family 8 DYE49_05310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYE49_05310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYE49_05310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYE49_05320 PF00005 ABC transporter DYE49_05325 PF01061 ABC-2 type transporter DYE49_05330 PF00535 Glycosyl transferase family 2 DYE49_05355 PF00005 ABC transporter DYE49_05360 PF03275 UDP-galactopyranose mutase DYE49_05365 PF00483 Nucleotidyl transferase DYE49_05370 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYE49_05375 PF16363 GDP-mannose 4,6 dehydratase DYE49_05385 PF03062 MBOAT, membrane-bound O-acyltransferase family DYE49_05390 PF02311 AraC-like ligand binding domain DYE49_05390 PF12833 Helix-turn-helix domain DYE49_05400 PF00596 Class II Aldolase and Adducin N-terminal domain DYE49_05405 PF01613 Flavin reductase like domain DYE49_05410 PF00694 Aconitase C-terminal domain DYE49_05415 PF00330 Aconitase family (aconitate hydratase) DYE49_05420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYE49_05420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYE49_05430 PF04055 Radical SAM superfamily DYE49_05455 PF01250 Ribosomal protein S6 DYE49_05460 PF00436 Single-strand binding protein family DYE49_05465 PF01084 Ribosomal protein S18 DYE49_05470 PF01281 Ribosomal protein L9, N-terminal domain DYE49_05470 PF03948 Ribosomal protein L9, C-terminal domain DYE49_05475 PF00772 DnaB-like helicase N terminal domain DYE49_05475 PF03796 DnaB-like helicase C terminal domain DYE49_05490 PF05958 tRNA (Uracil-5-)-methyltransferase DYE49_05495 PF12146 Serine aminopeptidase, S33 DYE49_05500 PF12627 Probable RNA and SrmB- binding site of polymerase A DYE49_05500 PF01743 Poly A polymerase head domain DYE49_05500 PF12626 Polymerase A arginine-rich C-terminus DYE49_05510 PF00849 RNA pseudouridylate synthase DYE49_05510 PF01479 S4 domain DYE49_05550 PF09094 Domain of unknown function (DUF1925) DYE49_05550 PF09095 Domain of unknown function (DUF1926) DYE49_05550 PF03065 Glycosyl hydrolase family 57 DYE49_05560 PF09334 tRNA synthetases class I (M) DYE49_05560 PF01588 Putative tRNA binding domain DYE49_05565 PF01050 Mannose-6-phosphate isomerase DYE49_05565 PF00483 Nucleotidyl transferase DYE49_05575 PF00155 Aminotransferase class I and II DYE49_05580 PF00534 Glycosyl transferases group 1 DYE49_05580 PF08323 Starch synthase catalytic domain DYE49_05590 PF02163 Peptidase family M50 DYE49_05590 PF17820 PDZ domain DYE49_05595 PF13288 DXP reductoisomerase C-terminal domain DYE49_05595 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYE49_05595 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYE49_05605 PF01255 Putative undecaprenyl diphosphate synthase DYE49_05610 PF01765 Ribosome recycling factor DYE49_05615 PF00889 Elongation factor TS DYE49_05620 PF00318 Ribosomal protein S2 DYE49_05625 PF02545 Maf-like protein DYE49_05645 PF01467 Cytidylyltransferase-like DYE49_05650 PF01783 Ribosomal L32p protein family DYE49_05655 PF00550 Phosphopantetheine attachment site DYE49_05660 PF00035 Double-stranded RNA binding motif DYE49_05660 PF14622 Ribonuclease-III-like DYE49_05675 PF00440 Bacterial regulatory proteins, tetR family DYE49_05675 PF08361 MAATS-type transcriptional repressor, C-terminal region DYE49_05685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYE49_05690 PF00873 AcrB/AcrD/AcrF family DYE49_05700 PF04321 RmlD substrate binding domain DYE49_05705 PF00753 Metallo-beta-lactamase superfamily DYE49_05705 PF12706 Beta-lactamase superfamily domain DYE49_05710 PF00005 ABC transporter DYE49_05725 PF08245 Mur ligase middle domain DYE49_05725 PF02875 Mur ligase family, glutamate ligase domain DYE49_05730 PF00842 Alanine racemase, C-terminal domain DYE49_05730 PF01168 Alanine racemase, N-terminal domain DYE49_05735 PF00579 tRNA synthetases class I (W and Y) DYE49_05740 PF01743 Poly A polymerase head domain DYE49_05740 PF13735 tRNA nucleotidyltransferase domain 2 putative DYE49_05740 PF12627 Probable RNA and SrmB- binding site of polymerase A DYE49_05760 PF00534 Glycosyl transferases group 1 DYE49_05760 PF08323 Starch synthase catalytic domain DYE49_05780 PF02618 YceG-like family DYE49_05785 PF01807 CHC2 zinc finger DYE49_05785 PF08275 DNA primase catalytic core, N-terminal domain DYE49_05790 PF04542 Sigma-70 region 2 DYE49_05790 PF04539 Sigma-70 region 3 DYE49_05790 PF00140 Sigma-70 factor, region 1.2 DYE49_05790 PF04545 Sigma-70, region 4 DYE49_05790 PF03979 Sigma-70 factor, region 1.1 DYE49_05825 PF03717 Penicillin-binding Protein dimerisation domain DYE49_05825 PF00905 Penicillin binding protein transpeptidase domain DYE49_05830 PF01098 Cell cycle protein DYE49_05840 PF00163 Ribosomal protein S4/S9 N-terminal domain DYE49_05840 PF01479 S4 domain DYE49_05850 PF01554 MatE DYE49_05875 PF17757 UvrB interaction domain DYE49_05875 PF00270 DEAD/DEAH box helicase DYE49_05875 PF00271 Helicase conserved C-terminal domain DYE49_05875 PF02559 CarD-like/TRCF domain DYE49_05875 PF03461 TRCF domain DYE49_05880 PF03707 Bacterial signalling protein N terminal repeat DYE49_05880 PF00990 Diguanylate cyclase, GGDEF domain DYE49_05880 PF00563 EAL domain DYE49_05885 PF00291 Pyridoxal-phosphate dependent enzyme DYE49_05895 PF18501 Alpha helical recognition lobe domain DYE49_05895 PF18510 Nuclease domain DYE49_05895 PF18516 RuvC nuclease domain DYE49_05910 PF01867 CRISPR associated protein Cas1 DYE49_05955 PF00176 SNF2 family N-terminal domain DYE49_05955 PF00271 Helicase conserved C-terminal domain DYE49_05965 PF03852 DNA mismatch endonuclease Vsr DYE49_05975 PF04463 Protein of unknown function (DUF523) DYE49_06010 PF08450 SMP-30/Gluconolactonase/LRE-like region DYE49_06025 PF00990 Diguanylate cyclase, GGDEF domain DYE49_06025 PF05230 MASE2 domain DYE49_06055 PF00953 Glycosyl transferase family 4 DYE49_06065 PF00849 RNA pseudouridylate synthase DYE49_06075 PF01168 Alanine racemase, N-terminal domain DYE49_06080 PF00398 Ribosomal RNA adenine dimethylase DYE49_06105 PF14821 Threonine synthase N terminus DYE49_06105 PF00291 Pyridoxal-phosphate dependent enzyme DYE49_06115 PF13193 AMP-binding enzyme C-terminal domain DYE49_06115 PF00668 Condensation domain DYE49_06115 PF00975 Thioesterase domain DYE49_06115 PF00501 AMP-binding enzyme DYE49_06115 PF00550 Phosphopantetheine attachment site DYE49_06120 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYE49_06120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYE49_06130 PF05336 L-rhamnose mutarotase DYE49_06135 PF06134 L-rhamnose isomerase (RhaA) DYE49_06150 PF08340 Domain of unknown function (DUF1732) DYE49_06150 PF03755 YicC-like family, N-terminal region DYE49_06155 PF01225 Mur ligase family, catalytic domain DYE49_06155 PF02875 Mur ligase family, glutamate ligase domain DYE49_06155 PF08245 Mur ligase middle domain DYE49_06180 PF00072 Response regulator receiver domain DYE49_06180 PF01966 HD domain DYE49_06195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYE49_06195 PF00460 Flagella basal body rod protein DYE49_06200 PF00460 Flagella basal body rod protein DYE49_06200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYE49_06205 PF00563 EAL domain DYE49_06205 PF00990 Diguanylate cyclase, GGDEF domain DYE49_06205 PF03707 Bacterial signalling protein N terminal repeat DYE49_06210 PF00483 Nucleotidyl transferase DYE49_06215 PF00226 DnaJ domain DYE49_06215 PF00684 DnaJ central domain DYE49_06215 PF01556 DnaJ C terminal domain DYE49_06220 PF02954 Bacterial regulatory protein, Fis family DYE49_06220 PF00158 Sigma-54 interaction domain DYE49_06220 PF00072 Response regulator receiver domain DYE49_06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_06225 PF00989 PAS fold DYE49_06225 PF00512 His Kinase A (phospho-acceptor) domain DYE49_06230 PF12169 DNA polymerase III subunits gamma and tau domain III DYE49_06240 PF04101 Glycosyltransferase family 28 C-terminal domain DYE49_06240 PF03033 Glycosyltransferase family 28 N-terminal domain DYE49_06245 PF00113 Enolase, C-terminal TIM barrel domain DYE49_06245 PF03952 Enolase, N-terminal domain DYE49_06260 PF07559 Flagellar basal body protein FlaE DYE49_06260 PF00460 Flagella basal body rod protein DYE49_06260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYE49_06265 PF03963 Flagellar hook capping protein - N-terminal region DYE49_06290 PF02568 Thiamine biosynthesis protein (ThiI) DYE49_06290 PF02926 THUMP domain DYE49_06305 PF00534 Glycosyl transferases group 1 DYE49_06315 PF18074 Primosomal protein N C-terminal domain DYE49_06315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYE49_06315 PF00270 DEAD/DEAH box helicase DYE49_06315 PF00271 Helicase conserved C-terminal domain DYE49_06315 PF17764 3′ DNA-binding domain (3′BD) DYE49_06320 PF01416 tRNA pseudouridine synthase DYE49_06325 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) DYE49_06330 PF01648 4'-phosphopantetheinyl transferase superfamily DYE49_06340 PF02457 DisA bacterial checkpoint controller nucleotide-binding DYE49_06345 PF00809 Pterin binding enzyme DYE49_06350 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYE49_06350 PF02779 Transketolase, pyrimidine binding domain DYE49_06350 PF02780 Transketolase, C-terminal domain DYE49_06355 PF04055 Radical SAM superfamily DYE49_06365 PF03781 Sulfatase-modifying factor enzyme 1 DYE49_06370 PF01740 STAS domain DYE49_06380 PF00672 HAMP domain DYE49_06380 PF07228 Stage II sporulation protein E (SpoIIE) DYE49_06385 PF01668 SmpB protein DYE49_06395 PF01300 Telomere recombination DYE49_06410 PF01973 Protein of unknown function DUF115 DYE49_06440 PF00133 tRNA synthetases class I (I, L, M and V) DYE49_06440 PF08264 Anticodon-binding domain of tRNA DYE49_06450 PF00437 Type II/IV secretion system protein DYE49_06455 PF00482 Type II secretion system (T2SS), protein F DYE49_06520 PF12848 ABC transporter DYE49_06520 PF00005 ABC transporter DYE49_06525 PF12300 ATP-dependent RNA helicase RhlB DYE49_06525 PF00270 DEAD/DEAH box helicase DYE49_06525 PF00271 Helicase conserved C-terminal domain DYE49_06530 PF10672 S-adenosylmethionine-dependent methyltransferase DYE49_06540 PF01197 Ribosomal protein L31 DYE49_06545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_06545 PF07498 Rho termination factor, N-terminal domain DYE49_06545 PF07497 Rho termination factor, RNA-binding domain DYE49_06560 PF00216 Bacterial DNA-binding protein DYE49_06570 PF01592 NifU-like N terminal domain DYE49_06575 PF00266 Aminotransferase class-V DYE49_06580 PF01458 Uncharacterized protein family (UPF0051) DYE49_06585 PF01458 Uncharacterized protein family (UPF0051) DYE49_06590 PF00005 ABC transporter DYE49_06600 PF00216 Bacterial DNA-binding protein DYE49_06605 PF01649 Ribosomal protein S20 DYE49_06620 PF06733 DEAD_2 DYE49_06620 PF13307 Helicase C-terminal domain DYE49_06625 PF00056 lactate/malate dehydrogenase, NAD binding domain DYE49_06625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DYE49_06630 PF00206 Lyase DYE49_06630 PF10415 Fumarase C C-terminus DYE49_06645 PF01593 Flavin containing amine oxidoreductase DYE49_06665 PF00970 Oxidoreductase FAD-binding domain DYE49_06665 PF00111 2Fe-2S iron-sulfur cluster binding domain DYE49_06665 PF00175 Oxidoreductase NAD-binding domain DYE49_06675 PF02910 Fumarate reductase flavoprotein C-term DYE49_06675 PF00890 FAD binding domain DYE49_06680 PF02080 TrkA-C domain DYE49_06680 PF06826 Predicted Permease Membrane Region DYE49_06705 PF04620 Flagellar filament outer layer protein Flaa DYE49_06715 PF01476 LysM domain DYE49_06715 PF01520 N-acetylmuramoyl-L-alanine amidase DYE49_06720 PF00206 Lyase DYE49_06720 PF02655 ATP-grasp domain DYE49_06725 PF02348 Cytidylyltransferase DYE49_06735 PF13186 Iron-sulfur cluster-binding domain DYE49_06740 PF13742 OB-fold nucleic acid binding domain DYE49_06740 PF02601 Exonuclease VII, large subunit DYE49_06745 PF02609 Exonuclease VII small subunit DYE49_06750 PF01119 DNA mismatch repair protein, C-terminal domain DYE49_06750 PF08676 MutL C terminal dimerisation domain DYE49_06780 PF01740 STAS domain DYE49_06800 PF09210 Domain of unknown function (DUF1957) DYE49_06800 PF03065 Glycosyl hydrolase family 57 DYE49_06825 PF00682 HMGL-like DYE49_06825 PF07836 DmpG-like communication domain DYE49_06830 PF00919 Uncharacterized protein family UPF0004 DYE49_06830 PF04055 Radical SAM superfamily DYE49_06860 PF02810 SEC-C motif DYE49_06860 PF07517 SecA DEAD-like domain DYE49_06860 PF01043 SecA preprotein cross-linking domain DYE49_06860 PF07516 SecA Wing and Scaffold domain DYE49_06895 PF17785 PUA-like domain DYE49_06895 PF10672 S-adenosylmethionine-dependent methyltransferase DYE49_06915 PF00158 Sigma-54 interaction domain DYE49_06915 PF01590 GAF domain DYE49_06920 PF00575 S1 RNA binding domain DYE49_06925 PF00849 RNA pseudouridylate synthase DYE49_06925 PF01479 S4 domain DYE49_06930 PF04079 Segregation and condensation complex subunit ScpB DYE49_06935 PF02616 Segregation and condensation protein ScpA DYE49_06940 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYE49_06945 PF00154 recA bacterial DNA recombination protein DYE49_06965 PF00834 Ribulose-phosphate 3 epimerase family DYE49_06985 PF03372 Endonuclease/Exonuclease/phosphatase family DYE49_06990 PF13187 4Fe-4S dicluster domain DYE49_07000 PF01551 Peptidase family M23 DYE49_07000 PF04225 Opacity-associated protein A LysM-like domain DYE49_07010 PF00912 Transglycosylase DYE49_07010 PF00905 Penicillin binding protein transpeptidase domain DYE49_07010 PF17092 Penicillin-binding protein OB-like domain DYE49_07015 PF02195 ParB-like nuclease domain DYE49_07015 PF17762 HTH domain found in ParB protein DYE49_07020 PF00579 tRNA synthetases class I (W and Y) DYE49_07025 PF02540 NAD synthase DYE49_07025 PF00795 Carbon-nitrogen hydrolase DYE49_07030 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYE49_07050 PF04055 Radical SAM superfamily DYE49_07050 PF02310 B12 binding domain DYE49_07055 PF03764 Elongation factor G, domain IV DYE49_07055 PF03144 Elongation factor Tu domain 2 DYE49_07055 PF00009 Elongation factor Tu GTP binding domain DYE49_07055 PF14492 Elongation Factor G, domain II DYE49_07055 PF00679 Elongation factor G C-terminus DYE49_07060 PF16314 Domain of unknown function (DUF4954) DYE49_07070 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYE49_07075 PF13286 Phosphohydrolase-associated domain DYE49_07075 PF01966 HD domain DYE49_07080 PF00072 Response regulator receiver domain DYE49_07090 PF01584 CheW-like domain DYE49_07095 PF02895 Signal transducing histidine kinase, homodimeric domain DYE49_07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_07095 PF01584 CheW-like domain DYE49_07095 PF07194 P2 response regulator binding domain DYE49_07095 PF01627 Hpt domain DYE49_07105 PF00155 Aminotransferase class I and II DYE49_07110 PF00512 His Kinase A (phospho-acceptor) domain DYE49_07110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_07115 PF00486 Transcriptional regulatory protein, C terminal DYE49_07115 PF00072 Response regulator receiver domain DYE49_07125 PF01813 ATP synthase subunit D DYE49_07130 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYE49_07130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_07135 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYE49_07135 PF16886 ATPsynthase alpha/beta subunit N-term extension DYE49_07135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_07155 PF01496 V-type ATPase 116kDa subunit family DYE49_07170 PF02896 PEP-utilising enzyme, TIM barrel domain DYE49_07170 PF00391 PEP-utilising enzyme, mobile domain DYE49_07170 PF05524 PEP-utilising enzyme, N-terminal DYE49_07170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYE49_07170 PF00381 PTS HPr component phosphorylation site DYE49_07175 PF03840 Preprotein translocase SecG subunit DYE49_07180 PF00121 Triosephosphate isomerase DYE49_07190 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYE49_07200 PF00156 Phosphoribosyl transferase domain DYE49_07215 PF18152 DAHP synthase ferredoxin-like domain DYE49_07215 PF00793 DAHP synthetase I family DYE49_07250 PF00202 Aminotransferase class-III DYE49_07255 PF00696 Amino acid kinase family DYE49_07260 PF01960 ArgJ family DYE49_07270 PF03193 RsgA GTPase DYE49_07285 PF00072 Response regulator receiver domain DYE49_07285 PF01339 CheB methylesterase DYE49_07290 PF03705 CheR methyltransferase, all-alpha domain DYE49_07290 PF01739 CheR methyltransferase, SAM binding domain DYE49_07295 PF00072 Response regulator receiver domain DYE49_07295 PF01627 Hpt domain DYE49_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_07295 PF01584 CheW-like domain DYE49_07295 PF02895 Signal transducing histidine kinase, homodimeric domain DYE49_07300 PF00211 Adenylate and Guanylate cyclase catalytic domain DYE49_07300 PF00672 HAMP domain DYE49_07305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_07335 PF00962 Adenosine/AMP deaminase DYE49_07340 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYE49_07340 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYE49_07340 PF00703 Glycosyl hydrolases family 2 DYE49_07340 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYE49_07345 PF00464 Serine hydroxymethyltransferase DYE49_07350 PF01590 GAF domain DYE49_07350 PF00360 Phytochrome region DYE49_07350 PF00990 Diguanylate cyclase, GGDEF domain DYE49_07350 PF00563 EAL domain DYE49_07355 PF00563 EAL domain DYE49_07355 PF00360 Phytochrome region DYE49_07355 PF00990 Diguanylate cyclase, GGDEF domain DYE49_07355 PF01590 GAF domain DYE49_07365 PF09186 Domain of unknown function (DUF1949) DYE49_07365 PF01205 Uncharacterized protein family UPF0029 DYE49_07375 PF00521 DNA gyrase/topoisomerase IV, subunit A DYE49_07380 PF00204 DNA gyrase B DYE49_07380 PF00986 DNA gyrase B subunit, carboxyl terminus DYE49_07380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_07380 PF01751 Toprim domain DYE49_07395 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_07395 PF07724 AAA domain (Cdc48 subfamily) DYE49_07400 PF00227 Proteasome subunit DYE49_07405 PF00589 Phage integrase family DYE49_07405 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_07410 PF01131 DNA topoisomerase DYE49_07410 PF01751 Toprim domain DYE49_07410 PF01396 Topoisomerase DNA binding C4 zinc finger DYE49_07415 PF17782 DprA winged helix domain DYE49_07415 PF02481 DNA recombination-mediator protein A DYE49_07425 PF00589 Phage integrase family DYE49_07425 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_07430 PF00091 Tubulin/FtsZ family, GTPase domain DYE49_07430 PF12327 FtsZ family, C-terminal domain DYE49_07435 PF02491 SHS2 domain inserted in FTSA DYE49_07440 PF08478 POTRA domain, FtsQ-type DYE49_07445 PF01098 Cell cycle protein DYE49_07450 PF08245 Mur ligase middle domain DYE49_07450 PF02875 Mur ligase family, glutamate ligase domain DYE49_07450 PF01225 Mur ligase family, catalytic domain DYE49_07460 PF01795 MraW methylase family DYE49_07465 PF02381 MraZ protein, putative antitoxin-like DYE49_07485 PF01116 Fructose-bisphosphate aldolase class-II DYE49_07500 PF01632 Ribosomal protein L35 DYE49_07505 PF00453 Ribosomal protein L20 DYE49_07520 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYE49_07525 PF00072 Response regulator receiver domain DYE49_07535 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_07535 PF07724 AAA domain (Cdc48 subfamily) DYE49_07535 PF02861 Clp amino terminal domain, pathogenicity island component DYE49_07535 PF10431 C-terminal, D2-small domain, of ClpB protein DYE49_07535 PF17871 AAA lid domain DYE49_07550 PF00675 Insulinase (Peptidase family M16) DYE49_07550 PF05193 Peptidase M16 inactive domain DYE49_07550 PF08367 Peptidase M16C associated DYE49_07555 PF01706 FliG C-terminal domain DYE49_07555 PF14842 FliG N-terminal domain DYE49_07555 PF14841 FliG middle domain DYE49_07560 PF01740 STAS domain DYE49_07560 PF00916 Sulfate permease family DYE49_07600 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_07600 PF01434 Peptidase family M41 DYE49_07600 PF06480 FtsH Extracellular DYE49_07600 PF17862 AAA+ lid domain DYE49_07615 PF13280 WYL domain DYE49_07645 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DYE49_07650 PF00682 HMGL-like DYE49_07650 PF02436 Conserved carboxylase domain DYE49_07670 PF02463 RecF/RecN/SMC N terminal domain DYE49_07675 PF01513 ATP-NAD kinase DYE49_07685 PF01584 CheW-like domain DYE49_07700 PF00488 MutS domain V DYE49_07700 PF05190 MutS family domain IV DYE49_07700 PF05188 MutS domain II DYE49_07700 PF01624 MutS domain I DYE49_07700 PF05192 MutS domain III DYE49_07710 PF07244 Surface antigen variable number repeat DYE49_07710 PF01103 Surface antigen DYE49_07720 PF02223 Thymidylate kinase DYE49_07730 PF01761 3-dehydroquinate synthase DYE49_07735 PF00266 Aminotransferase class-V DYE49_07745 PF01351 Ribonuclease HII DYE49_07760 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_07760 PF07724 AAA domain (Cdc48 subfamily) DYE49_07760 PF10431 C-terminal, D2-small domain, of ClpB protein DYE49_07760 PF02861 Clp amino terminal domain, pathogenicity island component DYE49_07760 PF17871 AAA lid domain DYE49_07765 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DYE49_07780 PF00005 ABC transporter DYE49_07785 PF12704 MacB-like periplasmic core domain DYE49_07785 PF02687 FtsX-like permease family DYE49_07795 PF00448 SRP54-type protein, GTPase domain DYE49_07795 PF02881 SRP54-type protein, helical bundle domain DYE49_07805 PF03462 PCRF domain DYE49_07805 PF00472 RF-1 domain DYE49_07825 PF03471 Transporter associated domain DYE49_07825 PF00571 CBS domain DYE49_07830 PF02130 Uncharacterized protein family UPF0054 DYE49_07835 PF07698 7TM receptor with intracellular HD hydrolase DYE49_07835 PF07697 7TM-HD extracellular DYE49_07835 PF01966 HD domain DYE49_07840 PF02562 PhoH-like protein DYE49_07845 PF03781 Sulfatase-modifying factor enzyme 1 DYE49_07850 PF01973 Protein of unknown function DUF115 DYE49_07870 PF00679 Elongation factor G C-terminus DYE49_07870 PF14492 Elongation Factor G, domain II DYE49_07870 PF00009 Elongation factor Tu GTP binding domain DYE49_07870 PF03144 Elongation factor Tu domain 2 DYE49_07870 PF06421 GTP-binding protein LepA C-terminus DYE49_07875 PF13180 PDZ domain DYE49_07885 PF01171 PP-loop family DYE49_07890 PF14693 Ribosomal protein TL5, C-terminal domain DYE49_07890 PF01386 Ribosomal L25p family DYE49_07895 PF04026 SpoVG DYE49_07900 PF00288 GHMP kinases N terminal domain DYE49_07900 PF08544 GHMP kinases C terminal DYE49_07925 PF01467 Cytidylyltransferase-like DYE49_07930 PF01926 50S ribosome-binding GTPase DYE49_07930 PF01018 GTP1/OBG DYE49_07935 PF01016 Ribosomal L27 protein DYE49_07945 PF00829 Ribosomal prokaryotic L21 protein DYE49_07950 PF00162 Phosphoglycerate kinase DYE49_07955 PF00583 Acetyltransferase (GNAT) family DYE49_07960 PF14535 AMP-binding enzyme C-terminal domain DYE49_07960 PF00501 AMP-binding enzyme DYE49_07965 PF01053 Cys/Met metabolism PLP-dependent enzyme DYE49_07980 PF01177 Asp/Glu/Hydantoin racemase DYE49_07990 PF00753 Metallo-beta-lactamase superfamily DYE49_07990 PF16123 Hydroxyacylglutathione hydrolase C-terminus DYE49_08005 PF10369 Small subunit of acetolactate synthase DYE49_08010 PF00793 DAHP synthetase I family DYE49_08010 PF18152 DAHP synthase ferredoxin-like domain DYE49_08015 PF00696 Amino acid kinase family DYE49_08015 PF01842 ACT domain DYE49_08015 PF03447 Homoserine dehydrogenase, NAD binding domain DYE49_08015 PF00742 Homoserine dehydrogenase DYE49_08015 PF13840 ACT domain DYE49_08025 PF00465 Iron-containing alcohol dehydrogenase DYE49_08030 PF01297 Zinc-uptake complex component A periplasmic DYE49_08040 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DYE49_08040 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DYE49_08045 PF03590 Aspartate-ammonia ligase DYE49_08055 PF00595 PDZ domain DYE49_08060 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DYE49_08060 PF02018 Carbohydrate binding domain DYE49_08065 PF05173 Dihydrodipicolinate reductase, C-terminus DYE49_08065 PF01113 Dihydrodipicolinate reductase, N-terminus DYE49_08095 PF01618 MotA/TolQ/ExbB proton channel family DYE49_08120 PF03459 TOBE domain DYE49_08120 PF17912 MalK OB fold domain DYE49_08120 PF00005 ABC transporter DYE49_08125 PF00773 RNB domain DYE49_08130 PF03447 Homoserine dehydrogenase, NAD binding domain DYE49_08130 PF00696 Amino acid kinase family DYE49_08130 PF00742 Homoserine dehydrogenase DYE49_08135 PF00491 Arginase family DYE49_08140 PF03692 Putative zinc- or iron-chelating domain DYE49_08150 PF00990 Diguanylate cyclase, GGDEF domain DYE49_08150 PF00563 EAL domain DYE49_08150 PF13426 PAS domain DYE49_08165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYE49_08165 PF00271 Helicase conserved C-terminal domain DYE49_08165 PF00270 DEAD/DEAH box helicase DYE49_08165 PF04408 Helicase associated domain (HA2) DYE49_08175 PF01702 Queuine tRNA-ribosyltransferase DYE49_08190 PF00692 dUTPase DYE49_08195 PF05193 Peptidase M16 inactive domain DYE49_08195 PF00675 Insulinase (Peptidase family M16) DYE49_08200 PF16363 GDP-mannose 4,6 dehydratase DYE49_08205 PF07687 Peptidase dimerisation domain DYE49_08205 PF01546 Peptidase family M20/M25/M40 DYE49_08210 PF01432 Peptidase family M3 DYE49_08210 PF08439 Oligopeptidase F DYE49_08215 PF00472 RF-1 domain DYE49_08215 PF03462 PCRF domain DYE49_08220 PF17827 PrmC N-terminal domain DYE49_08220 PF13847 Methyltransferase domain DYE49_08225 PF04607 Region found in RelA / SpoT proteins DYE49_08225 PF02824 TGS domain DYE49_08225 PF13291 ACT domain DYE49_08230 PF00294 pfkB family carbohydrate kinase DYE49_08235 PF01136 Peptidase family U32 DYE49_08235 PF16325 Peptidase family U32 C-terminal domain DYE49_08245 PF04204 Homoserine O-succinyltransferase DYE49_08250 PF01728 FtsJ-like methyltransferase DYE49_08250 PF18125 RlmM ferredoxin-like domain DYE49_08265 PF01554 MatE DYE49_08270 PF00133 tRNA synthetases class I (I, L, M and V) DYE49_08270 PF08264 Anticodon-binding domain of tRNA DYE49_08270 PF13603 Leucyl-tRNA synthetase, Domain 2 DYE49_08270 PF09334 tRNA synthetases class I (M) DYE49_08275 PF02511 Thymidylate synthase complementing protein DYE49_08285 PF00722 Glycosyl hydrolases family 16 DYE49_08300 PF00722 Glycosyl hydrolases family 16 DYE49_08310 PF06452 Carbohydrate family 9 binding domain-like DYE49_08310 PF02018 Carbohydrate binding domain DYE49_08310 PF00331 Glycosyl hydrolase family 10 DYE49_08320 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_08325 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_08335 PF02386 Cation transport protein DYE49_08350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYE49_08350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYE49_08360 PF00365 Phosphofructokinase DYE49_08390 PF13419 Haloacid dehalogenase-like hydrolase DYE49_08395 PF00682 HMGL-like DYE49_08400 PF02348 Cytidylyltransferase DYE49_08405 PF13173 AAA domain DYE49_08405 PF13635 Domain of unknown function (DUF4143) DYE49_08425 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DYE49_08425 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DYE49_08440 PF13426 PAS domain DYE49_08440 PF00990 Diguanylate cyclase, GGDEF domain DYE49_08440 PF00563 EAL domain DYE49_08450 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DYE49_08450 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DYE49_08465 PF13186 Iron-sulfur cluster-binding domain DYE49_08465 PF04055 Radical SAM superfamily DYE49_08480 PF04074 YhcH/YjgK/YiaL DYE49_08485 PF02801 Beta-ketoacyl synthase, C-terminal domain DYE49_08485 PF00109 Beta-ketoacyl synthase, N-terminal domain DYE49_08500 PF02801 Beta-ketoacyl synthase, C-terminal domain DYE49_08500 PF00109 Beta-ketoacyl synthase, N-terminal domain DYE49_08530 PF00501 AMP-binding enzyme DYE49_08530 PF13193 AMP-binding enzyme C-terminal domain DYE49_08535 PF00550 Phosphopantetheine attachment site DYE49_08540 PF00550 Phosphopantetheine attachment site DYE49_08560 PF00331 Glycosyl hydrolase family 10 DYE49_08560 PF07859 alpha/beta hydrolase fold DYE49_08570 PF02649 Type I GTP cyclohydrolase folE2 DYE49_08575 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYE49_08575 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYE49_08590 PF12002 MgsA AAA+ ATPase C terminal DYE49_08590 PF16193 AAA C-terminal domain DYE49_08590 PF00004 ATPase family associated with various cellular activities (AAA) DYE49_08595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYE49_08625 PF01515 Phosphate acetyl/butaryl transferase DYE49_08630 PF01063 Amino-transferase class IV DYE49_08655 PF00886 Ribosomal protein S16 DYE49_08665 PF05239 PRC-barrel domain DYE49_08665 PF01782 RimM N-terminal domain DYE49_08670 PF01746 tRNA (Guanine-1)-methyltransferase DYE49_08675 PF01245 Ribosomal protein L19 DYE49_08685 PF01312 FlhB HrpN YscU SpaS Family DYE49_08695 PF02021 Uncharacterised protein family UPF0102 DYE49_08725 PF00672 HAMP domain DYE49_08725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_08730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_08730 PF00672 HAMP domain DYE49_08735 PF00953 Glycosyl transferase family 4 DYE49_08740 PF02801 Beta-ketoacyl synthase, C-terminal domain DYE49_08740 PF00109 Beta-ketoacyl synthase, N-terminal domain DYE49_08750 PF00005 ABC transporter DYE49_08750 PF12848 ABC transporter DYE49_08750 PF16326 ABC transporter C-terminal domain DYE49_08770 PF00746 LPXTG cell wall anchor motif DYE49_08770 PF00565 Staphylococcal nuclease homologue DYE49_08770 PF00149 Calcineurin-like phosphoesterase DYE49_08770 PF02872 5'-nucleotidase, C-terminal domain DYE49_08805 PF01223 DNA/RNA non-specific endonuclease DYE49_08810 PF04002 RadC-like JAB domain DYE49_08820 PF13180 PDZ domain DYE49_08830 PF04055 Radical SAM superfamily DYE49_08835 PF14698 Argininosuccinate lyase C-terminal DYE49_08835 PF00206 Lyase DYE49_08845 PF00205 Thiamine pyrophosphate enzyme, central domain DYE49_08845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYE49_08845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYE49_08850 PF00990 Diguanylate cyclase, GGDEF domain DYE49_08865 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DYE49_08865 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DYE49_08870 PF00920 Dehydratase family DYE49_08890 PF00682 HMGL-like DYE49_08890 PF08502 LeuA allosteric (dimerisation) domain DYE49_08900 PF01268 Formate--tetrahydrofolate ligase DYE49_08905 PF01479 S4 domain DYE49_08905 PF00849 RNA pseudouridylate synthase DYE49_08910 PF04015 Domain of unknown function (DUF362) DYE49_08930 PF11953 Domain of unknown function (DUF3470) DYE49_08930 PF00037 4Fe-4S binding domain DYE49_08935 PF02901 Pyruvate formate lyase-like DYE49_08935 PF01228 Glycine radical DYE49_08945 PF02824 TGS domain DYE49_08945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYE49_08945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_08945 PF03129 Anticodon binding domain DYE49_08955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYE49_08955 PF18269 T3SS EscN ATPase C-terminal domain DYE49_08955 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYE49_08960 PF02108 Flagellar assembly protein FliH DYE49_08965 PF14841 FliG middle domain DYE49_08965 PF14842 FliG N-terminal domain DYE49_08965 PF01706 FliG C-terminal domain DYE49_08970 PF01514 Secretory protein of YscJ/FliF family DYE49_08970 PF08345 Flagellar M-ring protein C-terminal DYE49_08975 PF02049 Flagellar hook-basal body complex protein FliE DYE49_08980 PF00460 Flagella basal body rod protein DYE49_08980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYE49_08985 PF00460 Flagella basal body rod protein DYE49_08990 PF01025 GrpE DYE49_08995 PF00012 Hsp70 protein DYE49_09000 PF01556 DnaJ C terminal domain DYE49_09000 PF00226 DnaJ domain DYE49_09000 PF00684 DnaJ central domain DYE49_09015 PF01740 STAS domain DYE49_09020 PF02557 D-alanyl-D-alanine carboxypeptidase DYE49_09025 PF00285 Citrate synthase, C-terminal domain DYE49_09035 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DYE49_09035 PF06165 Glycosyltransferase family 36 DYE49_09045 PF14310 Fibronectin type III-like domain DYE49_09045 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_09045 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_09050 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_09055 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_09060 PF00657 GDSL-like Lipase/Acylhydrolase DYE49_09060 PF17996 Carbohydrate esterase 2 N-terminal DYE49_09060 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_09060 PF00404 Dockerin type I domain DYE49_09065 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_09065 PF00404 Dockerin type I domain DYE49_09070 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_09070 PF07691 PA14 domain DYE49_09070 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_09070 PF14310 Fibronectin type III-like domain DYE49_09080 PF00679 Elongation factor G C-terminus DYE49_09080 PF14492 Elongation Factor G, domain II DYE49_09080 PF03764 Elongation factor G, domain IV DYE49_09080 PF00009 Elongation factor Tu GTP binding domain DYE49_09080 PF03144 Elongation factor Tu domain 2 DYE49_09090 PF00403 Heavy-metal-associated domain DYE49_09105 PF00665 Integrase core domain DYE49_09105 PF13276 HTH-like domain DYE49_09105 PF13333 Integrase core domain DYE49_09120 PF07730 Histidine kinase DYE49_09120 PF05384 Sensor protein DegS DYE49_09120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_09125 PF00486 Transcriptional regulatory protein, C terminal DYE49_09125 PF00072 Response regulator receiver domain DYE49_09135 PF01301 Glycosyl hydrolases family 35 DYE49_09140 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_09145 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_09160 PF00596 Class II Aldolase and Adducin N-terminal domain DYE49_09175 PF01053 Cys/Met metabolism PLP-dependent enzyme DYE49_09180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYE49_09180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYE49_09185 PF13407 Periplasmic binding protein domain DYE49_09215 PF00005 ABC transporter DYE49_09215 PF02361 Cobalt transport protein DYE49_09225 PF01502 Phosphoribosyl-AMP cyclohydrolase DYE49_09225 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DYE49_09230 PF00072 Response regulator receiver domain DYE49_09240 PF00815 Histidinol dehydrogenase DYE49_09245 PF01327 Polypeptide deformylase DYE49_09250 PF02911 Formyl transferase, C-terminal domain DYE49_09250 PF00551 Formyl transferase DYE49_09255 PF03793 PASTA domain DYE49_09255 PF00069 Protein kinase domain DYE49_09260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DYE49_09265 PF01488 Shikimate / quinate 5-dehydrogenase DYE49_09265 PF08501 Shikimate dehydrogenase substrate binding domain DYE49_09275 PF00271 Helicase conserved C-terminal domain DYE49_09275 PF04851 Type III restriction enzyme, res subunit DYE49_09290 PF01336 OB-fold nucleic acid binding domain DYE49_09290 PF00152 tRNA synthetases class II (D, K and N) DYE49_09290 PF02938 GAD domain DYE49_09295 PF16360 GTP-binding GTPase Middle Region DYE49_09295 PF13167 GTP-binding GTPase N-terminal DYE49_09295 PF01926 50S ribosome-binding GTPase DYE49_09310 PF00588 SpoU rRNA Methylase family DYE49_09310 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYE49_09315 PF12833 Helix-turn-helix domain DYE49_09325 PF02142 MGS-like domain DYE49_09325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYE49_09325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYE49_09330 PF01171 PP-loop family DYE49_09335 PF02195 ParB-like nuclease domain DYE49_09335 PF17762 HTH domain found in ParB protein DYE49_09340 PF13614 AAA domain DYE49_09380 PF01259 SAICAR synthetase DYE49_09385 PF01479 S4 domain DYE49_09385 PF00849 RNA pseudouridylate synthase DYE49_09395 PF04607 Region found in RelA / SpoT proteins DYE49_09400 PF00731 AIR carboxylase DYE49_09405 PF00156 Phosphoribosyl transferase domain DYE49_09415 PF10117 McrBC 5-methylcytosine restriction system component DYE49_09420 PF07728 AAA domain (dynein-related subfamily) DYE49_09420 PF12102 Domain of unknown function (DUF3578) DYE49_09430 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DYE49_09455 PF01047 MarR family DYE49_09485 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_09485 PF00589 Phage integrase family DYE49_09490 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_09490 PF00589 Phage integrase family DYE49_09525 PF14535 AMP-binding enzyme C-terminal domain DYE49_09525 PF00501 AMP-binding enzyme DYE49_09530 PF00909 Ammonium Transporter Family DYE49_09535 PF18318 Glutamine synthetase C-terminal domain DYE49_09535 PF00120 Glutamine synthetase, catalytic domain DYE49_09535 PF12437 Glutamine synthetase type III N terminal DYE49_09545 PF00310 Glutamine amidotransferases class-II DYE49_09545 PF04898 Glutamate synthase central domain DYE49_09545 PF01645 Conserved region in glutamate synthase DYE49_09545 PF01493 GXGXG motif DYE49_09550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYE49_09550 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYE49_09555 PF08376 Nitrate and nitrite sensing DYE49_09555 PF03861 ANTAR domain DYE49_09560 PF00120 Glutamine synthetase, catalytic domain DYE49_09560 PF03951 Glutamine synthetase, beta-Grasp domain DYE49_09565 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYE49_09565 PF02142 MGS-like domain DYE49_09565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYE49_09570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DYE49_09570 PF00117 Glutamine amidotransferase class-I DYE49_09575 PF13537 Glutamine amidotransferase domain DYE49_09575 PF00733 Asparagine synthase DYE49_09590 PF00501 AMP-binding enzyme DYE49_09590 PF13193 AMP-binding enzyme C-terminal domain DYE49_09595 PF00293 NUDIX domain DYE49_09605 PF02690 Na+/Pi-cotransporter DYE49_09615 PF09297 NADH pyrophosphatase zinc ribbon domain DYE49_09615 PF00293 NUDIX domain DYE49_09620 PF00884 Sulfatase DYE49_09640 PF00005 ABC transporter DYE49_09645 PF01048 Phosphorylase superfamily DYE49_09710 PF04851 Type III restriction enzyme, res subunit DYE49_09710 PF02151 UvrB/uvrC motif DYE49_09710 PF17757 UvrB interaction domain DYE49_09710 PF12344 Ultra-violet resistance protein B DYE49_09710 PF00271 Helicase conserved C-terminal domain DYE49_09715 PF00830 Ribosomal L28 family DYE49_09720 PF03099 Biotin/lipoate A/B protein ligase family DYE49_09720 PF12706 Beta-lactamase superfamily domain DYE49_09745 PF14572 Phosphoribosyl synthetase-associated domain DYE49_09745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYE49_09750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYE49_09750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYE49_09760 PF07977 FabA-like domain DYE49_09765 PF02801 Beta-ketoacyl synthase, C-terminal domain DYE49_09765 PF00109 Beta-ketoacyl synthase, N-terminal domain DYE49_09780 PF00698 Acyl transferase domain DYE49_09785 PF00072 Response regulator receiver domain DYE49_09785 PF12833 Helix-turn-helix domain DYE49_09790 PF06580 Histidine kinase DYE49_09795 PF14310 Fibronectin type III-like domain DYE49_09795 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYE49_09795 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_09805 PF02368 Bacterial Ig-like domain (group 2) DYE49_09810 PF00722 Glycosyl hydrolases family 16 DYE49_09810 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DYE49_09825 PF00722 Glycosyl hydrolases family 16 DYE49_09830 PF00117 Glutamine amidotransferase class-I DYE49_09835 PF00977 Histidine biosynthesis protein DYE49_09850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYE49_09855 PF00873 AcrB/AcrD/AcrF family DYE49_09865 PF00075 RNase H DYE49_09875 PF08264 Anticodon-binding domain of tRNA DYE49_09875 PF00133 tRNA synthetases class I (I, L, M and V) DYE49_09875 PF10458 Valyl tRNA synthetase tRNA binding arm DYE49_09880 PF00180 Isocitrate/isopropylmalate dehydrogenase DYE49_09885 PF00672 HAMP domain DYE49_09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_09885 PF17200 Single Cache domain 2 DYE49_09895 PF00814 Glycoprotease family DYE49_09905 PF04542 Sigma-70 region 2 DYE49_09905 PF03979 Sigma-70 factor, region 1.1 DYE49_09905 PF00140 Sigma-70 factor, region 1.2 DYE49_09905 PF04539 Sigma-70 region 3 DYE49_09905 PF04545 Sigma-70, region 4 DYE49_09910 PF01336 OB-fold nucleic acid binding domain DYE49_09910 PF00152 tRNA synthetases class II (D, K and N) DYE49_09925 PF06418 CTP synthase N-terminus DYE49_09925 PF00117 Glutamine amidotransferase class-I DYE49_09930 PF02540 NAD synthase DYE49_09930 PF00958 GMP synthase C terminal domain DYE49_09930 PF00117 Glutamine amidotransferase class-I DYE49_09940 PF02833 DHHA2 domain DYE49_09940 PF01368 DHH family DYE49_09940 PF00571 CBS domain DYE49_09940 PF07085 DRTGG domain DYE49_09945 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DYE49_09945 PF02018 Carbohydrate binding domain DYE49_09950 PF13185 GAF domain DYE49_09955 PF00404 Dockerin type I domain DYE49_09955 PF00722 Glycosyl hydrolases family 16 DYE49_09990 PF12464 Maltose acetyltransferase DYE49_09990 PF14602 Hexapeptide repeat of succinyl-transferase DYE49_10075 PF13673 Acetyltransferase (GNAT) domain DYE49_10100 PF13495 Phage integrase, N-terminal SAM-like domain DYE49_10100 PF00589 Phage integrase family DYE49_10105 PF00288 GHMP kinases N terminal domain DYE49_10105 PF08544 GHMP kinases C terminal DYE49_10105 PF10509 Galactokinase galactose-binding signature DYE49_10110 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DYE49_10120 PF00072 Response regulator receiver domain DYE49_10125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYE49_10125 PF00072 Response regulator receiver domain DYE49_10125 PF00512 His Kinase A (phospho-acceptor) domain DYE49_10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_10125 PF00672 HAMP domain DYE49_10125 PF01627 Hpt domain DYE49_10130 PF11762 L-arabinose isomerase C-terminal domain DYE49_10130 PF02610 L-arabinose isomerase DYE49_10140 PF01554 MatE DYE49_10150 PF00343 Carbohydrate phosphorylase DYE49_10155 PF00128 Alpha amylase, catalytic domain DYE49_10155 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYE49_10160 PF01926 50S ribosome-binding GTPase DYE49_10160 PF07650 KH domain DYE49_10165 PF01134 Glucose inhibited division protein A DYE49_10165 PF13932 GidA associated domain DYE49_10170 PF00933 Glycosyl hydrolase family 3 N terminal domain DYE49_10200 PF01554 MatE DYE49_10205 PF02446 4-alpha-glucanotransferase DYE49_10215 PF00291 Pyridoxal-phosphate dependent enzyme DYE49_10215 PF14821 Threonine synthase N terminus DYE49_10220 PF00440 Bacterial regulatory proteins, tetR family DYE49_10220 PF18665 Tetracyclin repressor-like, C-terminal domain DYE49_10225 PF01613 Flavin reductase like domain DYE49_10240 PF01965 DJ-1/PfpI family DYE49_10245 PF01627 Hpt domain DYE49_10245 PF00072 Response regulator receiver domain DYE49_10245 PF00486 Transcriptional regulatory protein, C terminal DYE49_10250 PF00072 Response regulator receiver domain DYE49_10250 PF00672 HAMP domain DYE49_10250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYE49_10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_10250 PF01627 Hpt domain DYE49_10250 PF00512 His Kinase A (phospho-acceptor) domain DYE49_10260 PF01258 Prokaryotic dksA/traR C4-type zinc finger DYE49_10265 PF01176 Translation initiation factor 1A / IF-1 DYE49_10270 PF00226 DnaJ domain DYE49_10270 PF01556 DnaJ C terminal domain DYE49_10270 PF00684 DnaJ central domain DYE49_10290 PF00092 von Willebrand factor type A domain DYE49_10300 PF01882 Protein of unknown function DUF58 DYE49_10305 PF17863 AAA lid domain DYE49_10305 PF07726 ATPase family associated with various cellular activities (AAA) DYE49_10315 PF02082 Transcriptional regulator DYE49_10350 PF07745 Glycosyl hydrolase family 53 DYE49_10370 PF07745 Glycosyl hydrolase family 53 DYE49_10375 PF00664 ABC transporter transmembrane region DYE49_10375 PF00005 ABC transporter DYE49_10380 PF00005 ABC transporter DYE49_10380 PF00664 ABC transporter transmembrane region DYE49_10410 PF18318 Glutamine synthetase C-terminal domain DYE49_10410 PF00120 Glutamine synthetase, catalytic domain DYE49_10410 PF12437 Glutamine synthetase type III N terminal DYE49_10415 PF02743 Cache domain DYE49_10415 PF00672 HAMP domain DYE49_10415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_10420 PF01195 Peptidyl-tRNA hydrolase DYE49_10425 PF00403 Heavy-metal-associated domain DYE49_10430 PF01022 Bacterial regulatory protein, arsR family DYE49_10450 PF06971 Putative DNA-binding protein N-terminus DYE49_10450 PF02629 CoA binding domain DYE49_10455 PF00266 Aminotransferase class-V DYE49_10460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYE49_10460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYE49_10460 PF01842 ACT domain DYE49_10465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYE49_10465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYE49_10465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYE49_10465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYE49_10470 PF03006 Haemolysin-III related DYE49_10475 PF04055 Radical SAM superfamily DYE49_10475 PF08497 Radical SAM N-terminal DYE49_10475 PF11842 Domain of unknown function (DUF3362) DYE49_10480 PF02086 D12 class N6 adenine-specific DNA methyltransferase DYE49_10490 PF02769 AIR synthase related protein, C-terminal domain DYE49_10490 PF00586 AIR synthase related protein, N-terminal domain DYE49_10495 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYE49_10505 PF02203 Tar ligand binding domain homologue DYE49_10505 PF00672 HAMP domain DYE49_10505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_10510 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYE49_10510 PF00588 SpoU rRNA Methylase family DYE49_10515 PF02810 SEC-C motif DYE49_10530 PF11756 Nitrous oxide-stimulated promoter DYE49_10545 PF01145 SPFH domain / Band 7 family DYE49_10550 PF01145 SPFH domain / Band 7 family DYE49_10570 PF03129 Anticodon binding domain DYE49_10570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_10570 PF04073 Aminoacyl-tRNA editing domain DYE49_10575 PF00155 Aminotransferase class I and II DYE49_10585 PF03781 Sulfatase-modifying factor enzyme 1 DYE49_10635 PF03781 Sulfatase-modifying factor enzyme 1 DYE49_10670 PF00293 NUDIX domain DYE49_10685 PF02229 Transcriptional Coactivator p15 (PC4) DYE49_10695 PF01726 LexA DNA binding domain DYE49_10695 PF00717 Peptidase S24-like DYE49_10700 PF00381 PTS HPr component phosphorylation site DYE49_10705 PF02603 HPr Serine kinase N terminus DYE49_10705 PF07475 HPr Serine kinase C-terminal domain DYE49_10730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_10730 PF02743 Cache domain DYE49_10730 PF00672 HAMP domain DYE49_10735 PF17131 Outer membrane lipoprotein-sorting protein DYE49_10775 PF00005 ABC transporter DYE49_10775 PF16326 ABC transporter C-terminal domain DYE49_10775 PF12848 ABC transporter DYE49_10780 PF01728 FtsJ-like methyltransferase DYE49_10785 PF01551 Peptidase family M23 DYE49_10785 PF10145 Phage-related minor tail protein DYE49_10785 PF01464 Transglycosylase SLT domain DYE49_10790 PF00356 Bacterial regulatory proteins, lacI family DYE49_10795 PF00501 AMP-binding enzyme DYE49_10830 PF13662 Toprim domain DYE49_10830 PF02132 RecR protein DYE49_10835 PF02575 YbaB/EbfC DNA-binding family DYE49_10840 PF12169 DNA polymerase III subunits gamma and tau domain III DYE49_10855 PF02554 Carbon starvation protein CstA DYE49_10855 PF13722 5TM C-terminal transporter carbon starvation CstA DYE49_10870 PF00365 Phosphofructokinase DYE49_10895 PF01026 TatD related DNase DYE49_10910 PF00118 TCP-1/cpn60 chaperonin family DYE49_10925 PF03129 Anticodon binding domain DYE49_10925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYE49_10925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYE49_10935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYE49_10955 PF13193 AMP-binding enzyme C-terminal domain DYE49_10955 PF00501 AMP-binding enzyme DYE49_10960 PF00871 Acetokinase family DYE49_10965 PF00085 Thioredoxin DYE49_10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYE49_10975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYE49_10980 PF01202 Shikimate kinase DYE49_10985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYE49_10995 PF00582 Universal stress protein family DYE49_10995 PF00999 Sodium/hydrogen exchanger family DYE49_11015 PF00633 Helix-hairpin-helix motif DYE49_11015 PF10576 Iron-sulfur binding domain of endonuclease III DYE49_11015 PF00730 HhH-GPD superfamily base excision DNA repair protein DYE49_11020 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYE49_11020 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYE49_11020 PF02772 S-adenosylmethionine synthetase, central domain DYE49_11030 PF00005 ABC transporter DYE49_11035 PF01554 MatE DYE49_11040 PF00563 EAL domain DYE49_11040 PF00990 Diguanylate cyclase, GGDEF domain DYE49_11040 PF03707 Bacterial signalling protein N terminal repeat DYE49_11040 PF13188 PAS domain DYE49_11050 PF01555 DNA methylase DYE49_11055 PF07470 Glycosyl Hydrolase Family 88 DYE49_11085 PF00722 Glycosyl hydrolases family 16 DYE49_11090 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_11090 PF00404 Dockerin type I domain DYE49_11095 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11100 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11110 PF12833 Helix-turn-helix domain DYE49_11120 PF00150 Cellulase (glycosyl hydrolase family 5) DYE49_11120 PF00553 Cellulose binding domain DYE49_11145 PF04616 Glycosyl hydrolases family 43 DYE49_11145 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DYE49_11215 PF04962 KduI/IolB family DYE49_11220 PF17155 Gammaproteobacterial periplasmic sensor domain DYE49_11220 PF00990 Diguanylate cyclase, GGDEF domain DYE49_11230 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYE49_11230 PF00703 Glycosyl hydrolases family 2 DYE49_11230 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYE49_11230 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYE49_11230 PF16355 Domain of unknown function (DUF4982) DYE49_11240 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11245 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11275 PF02146 Sir2 family DYE49_11280 PF04452 RNA methyltransferase DYE49_11295 PF02527 rRNA small subunit methyltransferase G DYE49_11305 PF00691 OmpA family DYE49_11305 PF04972 BON domain DYE49_11320 PF10996 Beta-Casp domain DYE49_11320 PF00753 Metallo-beta-lactamase superfamily DYE49_11320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DYE49_11325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYE49_11330 PF03576 Peptidase family S58 DYE49_11335 PF01180 Dihydroorotate dehydrogenase DYE49_11345 PF00950 ABC 3 transport family DYE49_11350 PF00005 ABC transporter DYE49_11355 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DYE49_11355 PF01297 Zinc-uptake complex component A periplasmic DYE49_11365 PF01926 50S ribosome-binding GTPase DYE49_11365 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYE49_11375 PF02743 Cache domain DYE49_11375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_11375 PF00672 HAMP domain DYE49_11380 PF04055 Radical SAM superfamily DYE49_11380 PF06968 Biotin and Thiamin Synthesis associated domain DYE49_11390 PF00486 Transcriptional regulatory protein, C terminal DYE49_11390 PF00072 Response regulator receiver domain DYE49_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYE49_11395 PF00512 His Kinase A (phospho-acceptor) domain DYE49_11395 PF00989 PAS fold DYE49_11395 PF16736 Single Cache-like DYE49_11400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYE49_11415 PF01661 Macro domain DYE49_11420 PF01661 Macro domain DYE49_11425 PF08378 Nuclease-related domain DYE49_11435 PF08774 VRR-NUC domain DYE49_11435 PF04851 Type III restriction enzyme, res subunit DYE49_11450 PF18273 Type III R-M EcoP15I C-terminal domain DYE49_11450 PF01555 DNA methylase DYE49_11455 PF13676 TIR domain DYE49_11510 PF02926 THUMP domain DYE49_11510 PF01170 Putative RNA methylase family UPF0020 DYE49_11530 PF01435 Peptidase family M48 DYE49_11530 PF16491 CAAX prenyl protease N-terminal, five membrane helices DYE49_11535 PF01979 Amidohydrolase family DYE49_11540 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DYE49_11540 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DYE49_11545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYE49_11545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYE49_11585 PF00672 HAMP domain DYE49_11585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYE49_11585 PF02743 Cache domain DYE49_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYE49_11590 PF03466 LysR substrate binding domain DYE49_11600 PF02384 N-6 DNA Methylase DYE49_11620 PF13784 Fic/DOC family N-terminal DYE49_11620 PF02661 Fic/DOC family DYE49_11625 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DYE49_11625 PF18766 SWI2/SNF2 ATPase DYE49_11625 PF11867 Domain of unknown function (DUF3387) DYE49_11640 PF00120 Glutamine synthetase, catalytic domain DYE49_11640 PF03951 Glutamine synthetase, beta-Grasp domain DYE49_11645 PF01380 SIS domain DYE49_11650 PF01966 HD domain DYE49_11660 PF01926 50S ribosome-binding GTPase DYE49_11660 PF10396 GTP-binding protein TrmE N-terminus DYE49_11660 PF12631 MnmE helical domain DYE49_11680 PF00171 Aldehyde dehydrogenase family DYE49_11685 PF00696 Amino acid kinase family DYE49_11690 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYE49_11690 PF03807 NADP oxidoreductase coenzyme F420-dependent DYE49_11700 PF00005 ABC transporter DYE49_11720 PF00990 Diguanylate cyclase, GGDEF domain DYE49_11720 PF17158 Membrane-associated sensor, integral membrane domain DYE49_11775 PF00183 Hsp90 protein DYE49_11785 PF04851 Type III restriction enzyme, res subunit DYE49_11785 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DYE49_11785 PF00271 Helicase conserved C-terminal domain DYE49_11785 PF08463 EcoEI R protein C-terminal DYE49_11795 PF02899 Phage integrase, N-terminal SAM-like domain DYE49_11795 PF00589 Phage integrase family DYE49_11810 PF01420 Type I restriction modification DNA specificity domain DYE49_11820 PF12161 HsdM N-terminal domain DYE49_11820 PF02384 N-6 DNA Methylase DYE49_11825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYE49_11830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYE49_11830 PF00005 ABC transporter DYE49_11835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYE49_11835 PF00005 ABC transporter DYE49_11840 PF12911 N-terminal TM domain of oligopeptide transport permease C DYE49_11840 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11845 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_11850 PF00691 OmpA family DYE49_11850 PF05736 OprF membrane domain DYE49_11860 PF02401 LytB protein DYE49_11865 PF02355 Protein export membrane protein DYE49_11870 PF02355 Protein export membrane protein DYE49_11875 PF02699 Preprotein translocase subunit DYE49_11880 PF00551 Formyl transferase DYE49_11890 PF13488 Glycine zipper DYE49_11890 PF00691 OmpA family DYE49_11895 PF01476 LysM domain DYE49_11895 PF01464 Transglycosylase SLT domain DYE49_11965 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DYE49_12040 PF16875 Glycosyl hydrolase family 36 N-terminal domain DYE49_12040 PF16874 Glycosyl hydrolase family 36 C-terminal domain DYE49_12065 PF01430 Hsp33 protein DYE49_12075 PF07556 Protein of unknown function (DUF1538) DYE49_12080 PF02664 S-Ribosylhomocysteinase (LuxS) DYE49_12085 PF01048 Phosphorylase superfamily DYE49_12090 PF01985 CRS1 / YhbY (CRM) domain DYE49_12095 PF13597 Anaerobic ribonucleoside-triphosphate reductase DYE49_12095 PF03477 ATP cone domain DYE49_12105 PF06832 Penicillin-Binding Protein C-terminus Family DYE49_12105 PF00905 Penicillin binding protein transpeptidase domain DYE49_12105 PF00912 Transglycosylase DYE49_12110 PF00207 Alpha-2-macroglobulin family DYE49_12110 PF01835 MG2 domain DYE49_12110 PF07703 Alpha-2-macroglobulin bait region domain DYE49_12120 PF00849 RNA pseudouridylate synthase DYE49_12120 PF01479 S4 domain DYE49_12135 PF01634 ATP phosphoribosyltransferase DYE49_12135 PF08029 HisG, C-terminal domain DYE49_12140 PF02535 ZIP Zinc transporter DYE49_12145 PF04055 Radical SAM superfamily DYE49_12145 PF06968 Biotin and Thiamin Synthesis associated domain DYE49_12150 PF02632 BioY family DYE49_12155 PF00005 ABC transporter DYE49_12195 PF02237 Biotin protein ligase C terminal domain DYE49_12195 PF03099 Biotin/lipoate A/B protein ligase family DYE49_12195 PF08279 HTH domain DYE49_12200 PF00475 Imidazoleglycerol-phosphate dehydratase DYE49_12205 PF02687 FtsX-like permease family DYE49_12205 PF12704 MacB-like periplasmic core domain DYE49_12210 PF00005 ABC transporter DYE49_12215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYE49_12225 PF03853 YjeF-related protein N-terminus DYE49_12225 PF01256 Carbohydrate kinase DYE49_12240 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_12245 PF00528 Binding-protein-dependent transport system inner membrane component DYE49_12245 PF12911 N-terminal TM domain of oligopeptide transport permease C DYE49_12250 PF00005 ABC transporter DYE49_12250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYE49_12255 PF00005 ABC transporter DYE49_12255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYE49_12265 PF01479 S4 domain DYE49_12265 PF00849 RNA pseudouridylate synthase