locus-tag class description ABK01_00005 PF00308 Bacterial dnaA protein ABK01_00005 PF08299 Bacterial dnaA protein helix-turn-helix ABK01_00005 PF11638 DnaA N-terminal domain ABK01_00030 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_00045 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_00050 PF00005 ABC transporter ABK01_00050 PF08402 TOBE domain ABK01_00060 PF02608 ABC transporter substrate-binding protein PnrA-like ABK01_00065 PF00005 ABC transporter ABK01_00070 PF02653 Branched-chain amino acid transport system / permease component ABK01_00075 PF02653 Branched-chain amino acid transport system / permease component ABK01_00080 PF11855 Protein of unknown function (DUF3375) ABK01_00095 PF02661 Fic/DOC family ABK01_00095 PF12728 Helix-turn-helix domain ABK01_00115 PF10509 Galactokinase galactose-binding signature ABK01_00115 PF08544 GHMP kinases C terminal ABK01_00115 PF00288 GHMP kinases N terminal domain ABK01_00120 PF00571 CBS domain ABK01_00120 PF03471 Transporter associated domain ABK01_00120 PF01595 Cyclin M transmembrane N-terminal domain ABK01_00125 PF00571 CBS domain ABK01_00125 PF03471 Transporter associated domain ABK01_00125 PF01595 Cyclin M transmembrane N-terminal domain ABK01_00135 PF00085 Thioredoxin ABK01_00140 PF13277 YmdB-like protein ABK01_00145 PF00266 Aminotransferase class-V ABK01_00150 PF17728 BsuBI/PstI restriction endonuclease HTH domain ABK01_00150 PF06616 BsuBI/PstI restriction endonuclease domain ABK01_00155 PF07669 Eco57I restriction-modification methylase ABK01_00165 PF01458 Uncharacterized protein family (UPF0051) ABK01_00170 PF00005 ABC transporter ABK01_00190 PF01264 Chorismate synthase ABK01_00205 PF00155 Aminotransferase class I and II ABK01_00215 PF02028 BCCT, betaine/carnitine/choline family transporter ABK01_00220 PF12804 MobA-like NTP transferase domain ABK01_00225 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABK01_00225 PF00056 lactate/malate dehydrogenase, NAD binding domain ABK01_00230 PF00664 ABC transporter transmembrane region ABK01_00230 PF00005 ABC transporter ABK01_00245 PF08003 Protein of unknown function (DUF1698) ABK01_00255 PF00005 ABC transporter ABK01_00255 PF04954 Siderophore-interacting protein ABK01_00255 PF08021 Siderophore-interacting FAD-binding domain ABK01_00255 PF00664 ABC transporter transmembrane region ABK01_00260 PF11756 Nitrous oxide-stimulated promoter ABK01_00285 PF01554 MatE ABK01_00290 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABK01_00290 PF00391 PEP-utilising enzyme, mobile domain ABK01_00295 PF08359 YsiA-like protein, C-terminal region ABK01_00295 PF00440 Bacterial regulatory proteins, tetR family ABK01_00320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK01_00320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK01_00325 PF00378 Enoyl-CoA hydratase/isomerase ABK01_00330 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABK01_00330 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABK01_00365 PF01196 Ribosomal protein L17 ABK01_00370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABK01_00370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABK01_00370 PF01000 RNA polymerase Rpb3/RpoA insert domain ABK01_00375 PF00411 Ribosomal protein S11 ABK01_00380 PF00416 Ribosomal protein S13/S18 ABK01_00385 PF00444 Ribosomal protein L36 ABK01_00390 PF00344 SecY translocase ABK01_00395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABK01_00400 PF00327 Ribosomal protein L30p/L7e ABK01_00405 PF03719 Ribosomal protein S5, C-terminal domain ABK01_00405 PF00333 Ribosomal protein S5, N-terminal domain ABK01_00410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABK01_00415 PF00347 Ribosomal protein L6 ABK01_00420 PF00410 Ribosomal protein S8 ABK01_00425 PF00253 Ribosomal protein S14p/S29e ABK01_00430 PF00281 Ribosomal protein L5 ABK01_00430 PF00673 ribosomal L5P family C-terminus ABK01_00435 PF00467 KOW motif ABK01_00435 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABK01_00440 PF00238 Ribosomal protein L14p/L23e ABK01_00445 PF00366 Ribosomal protein S17 ABK01_00450 PF00831 Ribosomal L29 protein ABK01_00455 PF00252 Ribosomal protein L16p/L10e ABK01_00460 PF07650 KH domain ABK01_00460 PF00189 Ribosomal protein S3, C-terminal domain ABK01_00465 PF00237 Ribosomal protein L22p/L17e ABK01_00470 PF00203 Ribosomal protein S19 ABK01_00475 PF00181 Ribosomal Proteins L2, RNA binding domain ABK01_00475 PF03947 Ribosomal Proteins L2, C-terminal domain ABK01_00480 PF00276 Ribosomal protein L23 ABK01_00485 PF00573 Ribosomal protein L4/L1 family ABK01_00490 PF00297 Ribosomal protein L3 ABK01_00495 PF00338 Ribosomal protein S10p/S20e ABK01_00500 PF00009 Elongation factor Tu GTP binding domain ABK01_00500 PF03144 Elongation factor Tu domain 2 ABK01_00500 PF03143 Elongation factor Tu C-terminal domain ABK01_00515 PF00994 Probable molybdopterin binding domain ABK01_00525 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_00530 PF00005 ABC transporter ABK01_00530 PF17845 FbpC C-terminal regulatory nucleotide binding domain ABK01_00545 PF03484 tRNA synthetase B5 domain ABK01_00545 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABK01_00585 PF01464 Transglycosylase SLT domain ABK01_00590 PF02673 Bacitracin resistance protein BacA ABK01_00595 PF17854 FtsK alpha domain ABK01_00595 PF01580 FtsK/SpoIIIE family ABK01_00595 PF09397 Ftsk gamma domain ABK01_00610 PF01029 NusB family ABK01_00615 PF13145 PPIC-type PPIASE domain ABK01_00620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK01_00620 PF01411 tRNA synthetases class II (A) ABK01_00625 PF01026 TatD related DNase ABK01_00635 PF03330 Lytic transglycolase ABK01_00690 PF17863 AAA lid domain ABK01_00690 PF07726 ATPase family associated with various cellular activities (AAA) ABK01_00700 PF08011 PD-(D/E)XK nuclease superfamily ABK01_00700 PF09820 Predicted AAA-ATPase ABK01_00715 PF12592 Protein of unknown function (DUF3763) ABK01_00715 PF17868 AAA lid domain ABK01_00715 PF07728 AAA domain (dynein-related subfamily) ABK01_00725 PF05762 VWA domain containing CoxE-like protein ABK01_00730 PF12392 Collagenase ABK01_00730 PF01136 Peptidase family U32 ABK01_00740 PF01592 NifU-like N terminal domain ABK01_00745 PF17864 RuvB AAA lid domain ABK01_00745 PF05491 RuvB C-terminal winged helix domain ABK01_00745 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABK01_00755 PF13932 GidA associated domain ABK01_00755 PF01134 Glucose inhibited division protein A ABK01_00760 PF00962 Adenosine/AMP deaminase ABK01_00765 PF01791 DeoC/LacD family aldolase ABK01_00780 PF03553 Na+/H+ antiporter family ABK01_00785 PF00990 Diguanylate cyclase, GGDEF domain ABK01_00790 PF00990 Diguanylate cyclase, GGDEF domain ABK01_00790 PF17158 Membrane-associated sensor, integral membrane domain ABK01_00810 PF00005 ABC transporter ABK01_00810 PF12848 ABC transporter ABK01_00815 PF13439 Glycosyltransferase Family 4 ABK01_00815 PF00534 Glycosyl transferases group 1 ABK01_00830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABK01_00830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABK01_00835 PF02653 Branched-chain amino acid transport system / permease component ABK01_00840 PF00005 ABC transporter ABK01_00845 PF13407 Periplasmic binding protein domain ABK01_00850 PF01261 Xylose isomerase-like TIM barrel ABK01_00855 PF00205 Thiamine pyrophosphate enzyme, central domain ABK01_00855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABK01_00855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK01_00860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABK01_00860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABK01_00865 PF01116 Fructose-bisphosphate aldolase class-II ABK01_00870 PF00294 pfkB family carbohydrate kinase ABK01_00880 PF00455 DeoR C terminal sensor domain ABK01_00880 PF08220 DeoR-like helix-turn-helix domain ABK01_00885 PF00171 Aldehyde dehydrogenase family ABK01_00900 PF01206 Sulfurtransferase TusA ABK01_00915 PF00209 Sodium:neurotransmitter symporter family ABK01_00920 PF01212 Beta-eliminating lyase ABK01_00925 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_00925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABK01_00930 PF00175 Oxidoreductase NAD-binding domain ABK01_00930 PF00970 Oxidoreductase FAD-binding domain ABK01_00930 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ABK01_00935 PF08668 HDOD domain ABK01_00940 PF00005 ABC transporter ABK01_00945 PF03551 Transcriptional regulator PadR-like family ABK01_00955 PF04024 PspC domain ABK01_01005 PF00381 PTS HPr component phosphorylation site ABK01_01005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABK01_01005 PF00391 PEP-utilising enzyme, mobile domain ABK01_01005 PF05524 PEP-utilising enzyme, N-terminal ABK01_01005 PF02896 PEP-utilising enzyme, TIM barrel domain ABK01_01015 PF16363 GDP-mannose 4,6 dehydratase ABK01_01020 PF02446 4-alpha-glucanotransferase ABK01_01025 PF06874 Firmicute fructose-1,6-bisphosphatase ABK01_01035 PF06123 Inner membrane protein CreD ABK01_01040 PF14572 Phosphoribosyl synthetase-associated domain ABK01_01040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABK01_01060 PF01121 Dephospho-CoA kinase ABK01_01065 PF00691 OmpA family ABK01_01070 PF01551 Peptidase family M23 ABK01_01085 PF05525 Branched-chain amino acid transport protein ABK01_01090 PF01268 Formate--tetrahydrofolate ligase ABK01_01095 PF01467 Cytidylyltransferase-like ABK01_01100 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABK01_01105 PF03129 Anticodon binding domain ABK01_01105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK01_01115 PF03009 Glycerophosphoryl diester phosphodiesterase family ABK01_01125 PF01256 Carbohydrate kinase ABK01_01125 PF03853 YjeF-related protein N-terminus ABK01_01135 PF00365 Phosphofructokinase ABK01_01140 PF00571 CBS domain ABK01_01140 PF00478 IMP dehydrogenase / GMP reductase domain ABK01_01150 PF00106 short chain dehydrogenase ABK01_01155 PF00588 SpoU rRNA Methylase family ABK01_01160 PF02954 Bacterial regulatory protein, Fis family ABK01_01160 PF00158 Sigma-54 interaction domain ABK01_01160 PF00072 Response regulator receiver domain ABK01_01175 PF01432 Peptidase family M3 ABK01_01175 PF08439 Oligopeptidase F ABK01_01200 PF00291 Pyridoxal-phosphate dependent enzyme ABK01_01200 PF14821 Threonine synthase N terminus ABK01_01225 PF00403 Heavy-metal-associated domain ABK01_01230 PF01022 Bacterial regulatory protein, arsR family ABK01_01235 PF13651 Adenine-specific methyltransferase EcoRI ABK01_01240 PF13635 Domain of unknown function (DUF4143) ABK01_01240 PF13173 AAA domain ABK01_01245 PF00132 Bacterial transferase hexapeptide (six repeats) ABK01_01295 PF03577 Peptidase family C69 ABK01_01310 PF00255 Glutathione peroxidase ABK01_01315 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK01_01325 PF01556 DnaJ C terminal domain ABK01_01325 PF00226 DnaJ domain ABK01_01325 PF00684 DnaJ central domain ABK01_01330 PF00557 Metallopeptidase family M24 ABK01_01335 PF00581 Rhodanese-like domain ABK01_01335 PF12368 Rhodanase C-terminal ABK01_01335 PF17773 UPF0176 acylphosphatase like domain ABK01_01340 PF02743 Cache domain ABK01_01340 PF00672 HAMP domain ABK01_01340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_01345 PF03781 Sulfatase-modifying factor enzyme 1 ABK01_01365 PF08666 SAF domain ABK01_01365 PF03102 NeuB family ABK01_01370 PF02767 DNA polymerase III beta subunit, central domain ABK01_01370 PF00712 DNA polymerase III beta subunit, N-terminal domain ABK01_01370 PF02768 DNA polymerase III beta subunit, C-terminal domain ABK01_01375 PF02463 RecF/RecN/SMC N terminal domain ABK01_01415 PF08207 Elongation factor P (EF-P) KOW-like domain ABK01_01415 PF09285 Elongation factor P, C-terminal ABK01_01415 PF01132 Elongation factor P (EF-P) OB domain ABK01_01425 PF00005 ABC transporter ABK01_01450 PF08279 HTH domain ABK01_01450 PF13280 WYL domain ABK01_01470 PF13280 WYL domain ABK01_01470 PF08279 HTH domain ABK01_01515 PF00005 ABC transporter ABK01_01515 PF00664 ABC transporter transmembrane region ABK01_01525 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABK01_01525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK01_01530 PF01066 CDP-alcohol phosphatidyltransferase ABK01_01535 PF01161 Phosphatidylethanolamine-binding protein ABK01_01560 PF01551 Peptidase family M23 ABK01_01565 PF00768 D-alanyl-D-alanine carboxypeptidase ABK01_01565 PF07943 Penicillin-binding protein 5, C-terminal domain ABK01_01570 PF04055 Radical SAM superfamily ABK01_01570 PF01938 TRAM domain ABK01_01570 PF00919 Uncharacterized protein family UPF0004 ABK01_01585 PF00144 Beta-lactamase ABK01_01590 PF00753 Metallo-beta-lactamase superfamily ABK01_01595 PF01165 Ribosomal protein S21 ABK01_01645 PF02625 XdhC and CoxI family ABK01_01645 PF13478 XdhC Rossmann domain ABK01_01655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABK01_01670 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABK01_01670 PF00588 SpoU rRNA Methylase family ABK01_01675 PF02681 Divergent PAP2 family ABK01_01710 PF13505 Outer membrane protein beta-barrel domain ABK01_01720 PF12002 MgsA AAA+ ATPase C terminal ABK01_01720 PF16193 AAA C-terminal domain ABK01_01720 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_01740 PF13732 Domain of unknown function (DUF4162) ABK01_01740 PF00005 ABC transporter ABK01_01755 PF00933 Glycosyl hydrolase family 3 N terminal domain ABK01_01760 PF02436 Conserved carboxylase domain ABK01_01760 PF00682 HMGL-like ABK01_01760 PF00364 Biotin-requiring enzyme ABK01_01765 PF01235 Sodium:alanine symporter family ABK01_01770 PF07687 Peptidase dimerisation domain ABK01_01770 PF01546 Peptidase family M20/M25/M40 ABK01_01775 PF00072 Response regulator receiver domain ABK01_01780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABK01_01785 PF05164 Cell division protein ZapA ABK01_01795 PF00453 Ribosomal protein L20 ABK01_01800 PF01632 Ribosomal protein L35 ABK01_01805 PF00707 Translation initiation factor IF-3, C-terminal domain ABK01_01805 PF05198 Translation initiation factor IF-3, N-terminal domain ABK01_01820 PF08543 Phosphomethylpyrimidine kinase ABK01_01825 PF00591 Glycosyl transferase family, a/b domain ABK01_01825 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ABK01_01825 PF02885 Glycosyl transferase family, helical bundle domain ABK01_01830 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ABK01_01830 PF17768 RecJ OB domain ABK01_01830 PF02272 DHHA1 domain ABK01_01830 PF01368 DHH family ABK01_01835 PF01032 FecCD transport family ABK01_01840 PF00005 ABC transporter ABK01_01845 PF01497 Periplasmic binding protein ABK01_01850 PF03459 TOBE domain ABK01_01865 PF00486 Transcriptional regulatory protein, C terminal ABK01_01865 PF00072 Response regulator receiver domain ABK01_01870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_01870 PF00672 HAMP domain ABK01_01870 PF00512 His Kinase A (phospho-acceptor) domain ABK01_01875 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK01_01880 PF00595 PDZ domain ABK01_01885 PF09383 NIL domain ABK01_01885 PF00005 ABC transporter ABK01_01890 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_01895 PF01791 DeoC/LacD family aldolase ABK01_01900 PF13407 Periplasmic binding protein domain ABK01_01905 PF02653 Branched-chain amino acid transport system / permease component ABK01_01910 PF02653 Branched-chain amino acid transport system / permease component ABK01_01915 PF00005 ABC transporter ABK01_01920 PF04198 Putative sugar-binding domain ABK01_01925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK01_01925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK01_01945 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_01950 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_01965 PF13361 UvrD-like helicase C-terminal domain ABK01_01965 PF12705 PD-(D/E)XK nuclease superfamily ABK01_01965 PF00580 UvrD/REP helicase N-terminal domain ABK01_01970 PF00672 HAMP domain ABK01_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_01970 PF02743 Cache domain ABK01_01980 PF02872 5'-nucleotidase, C-terminal domain ABK01_01980 PF00149 Calcineurin-like phosphoesterase ABK01_01990 PF03471 Transporter associated domain ABK01_01990 PF00999 Sodium/hydrogen exchanger family ABK01_01990 PF02080 TrkA-C domain ABK01_02005 PF00691 OmpA family ABK01_02005 PF01389 OmpA-like transmembrane domain ABK01_02020 PF01171 PP-loop family ABK01_02060 PF00679 Elongation factor G C-terminus ABK01_02060 PF03144 Elongation factor Tu domain 2 ABK01_02060 PF00009 Elongation factor Tu GTP binding domain ABK01_02060 PF03764 Elongation factor G, domain IV ABK01_02060 PF14492 Elongation Factor G, domain II ABK01_02065 PF02311 AraC-like ligand binding domain ABK01_02065 PF12833 Helix-turn-helix domain ABK01_02090 PF00005 ABC transporter ABK01_02095 PF01106 NifU-like domain ABK01_02110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABK01_02110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABK01_02110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABK01_02110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABK01_02115 PF01476 LysM domain ABK01_02115 PF08525 Opacity-associated protein A N-terminal motif ABK01_02115 PF01551 Peptidase family M23 ABK01_02140 PF00005 ABC transporter ABK01_02190 PF11798 IMS family HHH motif ABK01_02190 PF00817 impB/mucB/samB family ABK01_02190 PF11799 impB/mucB/samB family C-terminal domain ABK01_02205 PF01370 NAD dependent epimerase/dehydratase family ABK01_02210 PF00155 Aminotransferase class I and II ABK01_02240 PF01032 FecCD transport family ABK01_02245 PF00005 ABC transporter ABK01_02250 PF05958 tRNA (Uracil-5-)-methyltransferase ABK01_02275 PF00488 MutS domain V ABK01_02275 PF01713 Smr domain ABK01_02285 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABK01_02285 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABK01_02285 PF02772 S-adenosylmethionine synthetase, central domain ABK01_02330 PF00436 Single-strand binding protein family ABK01_02335 PF03949 Malic enzyme, NAD binding domain ABK01_02335 PF00390 Malic enzyme, N-terminal domain ABK01_02340 PF00271 Helicase conserved C-terminal domain ABK01_02340 PF00270 DEAD/DEAH box helicase ABK01_02345 PF00534 Glycosyl transferases group 1 ABK01_02345 PF13439 Glycosyltransferase Family 4 ABK01_02370 PF00468 Ribosomal protein L34 ABK01_02380 PF01809 Putative membrane protein insertion efficiency factor ABK01_02385 PF02096 60Kd inner membrane protein ABK01_02385 PF14849 YidC periplasmic domain ABK01_02390 PF01424 R3H domain ABK01_02390 PF14804 Jag N-terminus ABK01_02400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABK01_02405 PF02699 Preprotein translocase subunit ABK01_02410 PF02355 Protein export membrane protein ABK01_02415 PF02355 Protein export membrane protein ABK01_02420 PF00156 Phosphoribosyl transferase domain ABK01_02430 PF02978 Signal peptide binding domain ABK01_02430 PF02881 SRP54-type protein, helical bundle domain ABK01_02430 PF00448 SRP54-type protein, GTPase domain ABK01_02435 PF00334 Nucleoside diphosphate kinase ABK01_02440 PF00343 Carbohydrate phosphorylase ABK01_02445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABK01_02445 PF00128 Alpha amylase, catalytic domain ABK01_02455 PF02603 HPr Serine kinase N terminus ABK01_02455 PF07475 HPr Serine kinase C-terminal domain ABK01_02460 PF00381 PTS HPr component phosphorylation site ABK01_02470 PF01921 tRNA synthetases class I (K) ABK01_02485 PF00209 Sodium:neurotransmitter symporter family ABK01_02490 PF02075 Crossover junction endodeoxyribonuclease RuvC ABK01_02500 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABK01_02505 PF00958 GMP synthase C terminal domain ABK01_02505 PF00117 Glutamine amidotransferase class-I ABK01_02540 PF03144 Elongation factor Tu domain 2 ABK01_02540 PF00009 Elongation factor Tu GTP binding domain ABK01_02540 PF14492 Elongation Factor G, domain II ABK01_02540 PF06421 GTP-binding protein LepA C-terminus ABK01_02540 PF00679 Elongation factor G C-terminus ABK01_02555 PF03485 Arginyl tRNA synthetase N terminal domain ABK01_02555 PF00750 tRNA synthetases class I (R) ABK01_02555 PF05746 DALR anticodon binding domain ABK01_02565 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABK01_02565 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABK01_02570 PF00696 Amino acid kinase family ABK01_02575 PF03606 C4-dicarboxylate anaerobic carrier ABK01_02585 PF02810 SEC-C motif ABK01_02585 PF07517 SecA DEAD-like domain ABK01_02585 PF07516 SecA Wing and Scaffold domain ABK01_02585 PF01043 SecA preprotein cross-linking domain ABK01_02600 PF00572 Ribosomal protein L13 ABK01_02605 PF00380 Ribosomal protein S9/S16 ABK01_02615 PF04536 TPM domain ABK01_02625 PF00873 AcrB/AcrD/AcrF family ABK01_02630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK01_02645 PF12008 Type I restriction and modification enzyme - subunit R C terminal ABK01_02645 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABK01_02645 PF18766 SWI2/SNF2 ATPase ABK01_02660 PF01420 Type I restriction modification DNA specificity domain ABK01_02670 PF12161 HsdM N-terminal domain ABK01_02670 PF02384 N-6 DNA Methylase ABK01_02675 PF07687 Peptidase dimerisation domain ABK01_02675 PF01546 Peptidase family M20/M25/M40 ABK01_02680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABK01_02680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABK01_02685 PF00210 Ferritin-like domain ABK01_02690 PF00183 Hsp90 protein ABK01_02695 PF02743 Cache domain ABK01_02695 PF00672 HAMP domain ABK01_02695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_02700 PF10502 Signal peptidase, peptidase S26 ABK01_02710 PF00574 Clp protease ABK01_02715 PF02608 ABC transporter substrate-binding protein PnrA-like ABK01_02720 PF00005 ABC transporter ABK01_02725 PF02653 Branched-chain amino acid transport system / permease component ABK01_02730 PF02653 Branched-chain amino acid transport system / permease component ABK01_02820 PF00871 Acetokinase family ABK01_02855 PF02403 Seryl-tRNA synthetase N-terminal domain ABK01_02855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK01_02860 PF03840 Preprotein translocase SecG subunit ABK01_02865 PF00563 EAL domain ABK01_02865 PF01590 GAF domain ABK01_02865 PF00990 Diguanylate cyclase, GGDEF domain ABK01_02865 PF00360 Phytochrome region ABK01_02870 PF03144 Elongation factor Tu domain 2 ABK01_02870 PF00679 Elongation factor G C-terminus ABK01_02870 PF14492 Elongation Factor G, domain II ABK01_02870 PF03764 Elongation factor G, domain IV ABK01_02870 PF00009 Elongation factor Tu GTP binding domain ABK01_02875 PF00365 Phosphofructokinase ABK01_02880 PF02653 Branched-chain amino acid transport system / permease component ABK01_02885 PF00005 ABC transporter ABK01_02895 PF18610 Periplasmic binding protein domain ABK01_02895 PF13407 Periplasmic binding protein domain ABK01_02905 PF17191 RecG wedge domain ABK01_02905 PF00271 Helicase conserved C-terminal domain ABK01_02905 PF00270 DEAD/DEAH box helicase ABK01_02915 PF06071 Protein of unknown function (DUF933) ABK01_02915 PF01926 50S ribosome-binding GTPase ABK01_02935 PF04055 Radical SAM superfamily ABK01_02955 PF00258 Flavodoxin ABK01_02960 PF13411 MerR HTH family regulatory protein ABK01_02960 PF06445 GyrI-like small molecule binding domain ABK01_02965 PF03606 C4-dicarboxylate anaerobic carrier ABK01_02970 PF01979 Amidohydrolase family ABK01_02975 PF03606 C4-dicarboxylate anaerobic carrier ABK01_02980 PF12705 PD-(D/E)XK nuclease superfamily ABK01_02990 PF09338 Glycine/sarcosine/betaine reductase component B subunits ABK01_03000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABK01_03000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABK01_03005 PF02558 Ketopantoate reductase PanE/ApbA ABK01_03005 PF08546 Ketopantoate reductase PanE/ApbA C terminal ABK01_03030 PF02637 GatB domain ABK01_03030 PF02934 GatB/GatE catalytic domain ABK01_03035 PF01204 Trehalase ABK01_03040 PF02503 Polyphosphate kinase middle domain ABK01_03040 PF13090 Polyphosphate kinase C-terminal domain 2 ABK01_03040 PF17941 Polyphosphate kinase C-terminal domain 1 ABK01_03040 PF13089 Polyphosphate kinase N-terminal domain ABK01_03090 PF01546 Peptidase family M20/M25/M40 ABK01_03090 PF07687 Peptidase dimerisation domain ABK01_03095 PF00270 DEAD/DEAH box helicase ABK01_03095 PF00271 Helicase conserved C-terminal domain ABK01_03105 PF01008 Initiation factor 2 subunit family ABK01_03135 PF01381 Helix-turn-helix ABK01_03140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK01_03145 PF00005 ABC transporter ABK01_03160 PF12704 MacB-like periplasmic core domain ABK01_03160 PF02687 FtsX-like permease family ABK01_03160 PF00005 ABC transporter ABK01_03175 PF02687 FtsX-like permease family ABK01_03175 PF12704 MacB-like periplasmic core domain ABK01_03175 PF00005 ABC transporter ABK01_03180 PF02743 Cache domain ABK01_03180 PF00672 HAMP domain ABK01_03180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_03215 PF00268 Ribonucleotide reductase, small chain ABK01_03220 PF01554 MatE ABK01_03240 PF17674 HHH domain ABK01_03240 PF00575 S1 RNA binding domain ABK01_03240 PF09371 Tex-like protein N-terminal domain ABK01_03240 PF16921 Tex protein YqgF-like domain ABK01_03255 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABK01_03255 PF04963 Sigma-54 factor, core binding domain ABK01_03255 PF04552 Sigma-54, DNA binding domain ABK01_03275 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_03280 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_03300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABK01_03300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABK01_03305 PF13742 OB-fold nucleic acid binding domain ABK01_03305 PF02601 Exonuclease VII, large subunit ABK01_03320 PF00849 RNA pseudouridylate synthase ABK01_03320 PF01479 S4 domain ABK01_03330 PF00892 EamA-like transporter family ABK01_03335 PF00578 AhpC/TSA family ABK01_03335 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABK01_03345 PF04072 Leucine carboxyl methyltransferase ABK01_03350 PF00011 Hsp20/alpha crystallin family ABK01_03355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABK01_03355 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABK01_03360 PF00258 Flavodoxin ABK01_03370 PF13185 GAF domain ABK01_03380 PF00950 ABC 3 transport family ABK01_03390 PF01926 50S ribosome-binding GTPase ABK01_03390 PF07650 KH domain ABK01_03395 PF13187 4Fe-4S dicluster domain ABK01_03395 PF00037 4Fe-4S binding domain ABK01_03395 PF04060 Putative Fe-S cluster ABK01_03400 PF02508 Rnf-Nqr subunit, membrane protein ABK01_03410 PF04205 FMN-binding domain ABK01_03415 PF03116 NQR2, RnfD, RnfE family ABK01_03420 PF13375 RnfC Barrel sandwich hybrid domain ABK01_03420 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABK01_03420 PF13237 4Fe-4S dicluster domain ABK01_03420 PF10531 SLBB domain ABK01_03425 PF07055 Enoyl reductase FAD binding domain ABK01_03425 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ABK01_03425 PF12241 Trans-2-enoyl-CoA reductase catalytic region ABK01_03430 PF00364 Biotin-requiring enzyme ABK01_03435 PF00289 Biotin carboxylase, N-terminal domain ABK01_03435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK01_03435 PF02785 Biotin carboxylase C-terminal domain ABK01_03440 PF01039 Carboxyl transferase domain ABK01_03445 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABK01_03455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABK01_03455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABK01_03460 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ABK01_03460 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ABK01_03465 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ABK01_03470 PF01180 Dihydroorotate dehydrogenase ABK01_03475 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABK01_03480 PF01979 Amidohydrolase family ABK01_03485 PF00156 Phosphoribosyl transferase domain ABK01_03490 PF02559 CarD-like/TRCF domain ABK01_03490 PF00271 Helicase conserved C-terminal domain ABK01_03490 PF03461 TRCF domain ABK01_03490 PF00270 DEAD/DEAH box helicase ABK01_03490 PF17757 UvrB interaction domain ABK01_03495 PF00027 Cyclic nucleotide-binding domain ABK01_03495 PF13545 Crp-like helix-turn-helix domain ABK01_03505 PF02811 PHP domain ABK01_03530 PF07669 Eco57I restriction-modification methylase ABK01_03595 PF00580 UvrD/REP helicase N-terminal domain ABK01_03595 PF13361 UvrD-like helicase C-terminal domain ABK01_03605 PF01048 Phosphorylase superfamily ABK01_03615 PF00849 RNA pseudouridylate synthase ABK01_03620 PF00300 Histidine phosphatase superfamily (branch 1) ABK01_03635 PF03979 Sigma-70 factor, region 1.1 ABK01_03635 PF04539 Sigma-70 region 3 ABK01_03635 PF04545 Sigma-70, region 4 ABK01_03635 PF00140 Sigma-70 factor, region 1.2 ABK01_03635 PF04542 Sigma-70 region 2 ABK01_03640 PF00166 Chaperonin 10 Kd subunit ABK01_03645 PF17131 Outer membrane lipoprotein-sorting protein ABK01_03670 PF13476 AAA domain ABK01_03675 PF00149 Calcineurin-like phosphoesterase ABK01_03675 PF12320 Type 5 capsule protein repressor C-terminal domain ABK01_03680 PF01297 Zinc-uptake complex component A periplasmic ABK01_03685 PF03553 Na+/H+ antiporter family ABK01_03695 PF03023 Lipid II flippase MurJ ABK01_03700 PF01409 tRNA synthetases class II core domain (F) ABK01_03705 PF00579 tRNA synthetases class I (W and Y) ABK01_03715 PF00270 DEAD/DEAH box helicase ABK01_03715 PF00271 Helicase conserved C-terminal domain ABK01_03715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABK01_03715 PF04408 Helicase associated domain (HA2) ABK01_03720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABK01_03735 PF07195 Flagellar hook-associated protein 2 C-terminus ABK01_03735 PF02465 Flagellar hook-associated protein 2 N-terminus ABK01_03740 PF00700 Bacterial flagellin C-terminal helical region ABK01_03740 PF00669 Bacterial flagellin N-terminal helical region ABK01_03745 PF00700 Bacterial flagellin C-terminal helical region ABK01_03745 PF00669 Bacterial flagellin N-terminal helical region ABK01_03760 PF00118 TCP-1/cpn60 chaperonin family ABK01_03780 PF01515 Phosphate acetyl/butaryl transferase ABK01_03785 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_03790 PF00933 Glycosyl hydrolase family 3 N terminal domain ABK01_03790 PF01915 Glycosyl hydrolase family 3 C-terminal domain ABK01_03795 PF02511 Thymidylate synthase complementing protein ABK01_03800 PF02554 Carbon starvation protein CstA ABK01_03805 PF01820 D-ala D-ala ligase N-terminus ABK01_03805 PF07478 D-ala D-ala ligase C-terminus ABK01_03815 PF07238 PilZ domain ABK01_03830 PF02504 Fatty acid synthesis protein ABK01_03835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABK01_03840 PF08245 Mur ligase middle domain ABK01_03840 PF02875 Mur ligase family, glutamate ligase domain ABK01_03840 PF01225 Mur ligase family, catalytic domain ABK01_03860 PF00672 HAMP domain ABK01_03860 PF02743 Cache domain ABK01_03860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_03865 PF03572 Peptidase family S41 ABK01_03865 PF17820 PDZ domain ABK01_03865 PF01471 Putative peptidoglycan binding domain ABK01_03870 PF04452 RNA methyltransferase ABK01_03880 PF01636 Phosphotransferase enzyme family ABK01_03890 PF01554 MatE ABK01_03895 PF02719 Polysaccharide biosynthesis protein ABK01_03905 PF00730 HhH-GPD superfamily base excision DNA repair protein ABK01_03925 PF12169 DNA polymerase III subunits gamma and tau domain III ABK01_03925 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABK01_03925 PF12170 DNA polymerase III tau subunit V interacting with alpha ABK01_03935 PF02575 YbaB/EbfC DNA-binding family ABK01_03940 PF02132 RecR protein ABK01_03940 PF13662 Toprim domain ABK01_03985 PF02325 YGGT family ABK01_03995 PF03030 Inorganic H+ pyrophosphatase ABK01_04000 PF00579 tRNA synthetases class I (W and Y) ABK01_04005 PF01027 Inhibitor of apoptosis-promoting Bax1 ABK01_04015 PF01925 Sulfite exporter TauE/SafE ABK01_04020 PF01541 GIY-YIG catalytic domain ABK01_04020 PF02151 UvrB/uvrC motif ABK01_04020 PF08459 UvrC Helix-hairpin-helix N-terminal ABK01_04025 PF00483 Nucleotidyl transferase ABK01_04045 PF04468 PSP1 C-terminal conserved region ABK01_04060 PF04225 Opacity-associated protein A LysM-like domain ABK01_04060 PF01551 Peptidase family M23 ABK01_04070 PF02223 Thymidylate kinase ABK01_04080 PF01103 Surface antigen ABK01_04080 PF07244 Surface antigen variable number repeat ABK01_04090 PF05188 MutS domain II ABK01_04090 PF00488 MutS domain V ABK01_04090 PF01624 MutS domain I ABK01_04090 PF05192 MutS domain III ABK01_04090 PF05190 MutS family domain IV ABK01_04105 PF13187 4Fe-4S dicluster domain ABK01_04115 PF01551 Peptidase family M23 ABK01_04115 PF04225 Opacity-associated protein A LysM-like domain ABK01_04150 PF03590 Aspartate-ammonia ligase ABK01_04160 PF02926 THUMP domain ABK01_04160 PF02568 Thiamine biosynthesis protein (ThiI) ABK01_04175 PF01048 Phosphorylase superfamily ABK01_04185 PF02599 Global regulator protein family ABK01_04190 PF02623 FliW protein ABK01_04195 PF00669 Bacterial flagellin N-terminal helical region ABK01_04195 PF00700 Bacterial flagellin C-terminal helical region ABK01_04200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABK01_04200 PF07196 Flagellin hook IN motif ABK01_04220 PF00669 Bacterial flagellin N-terminal helical region ABK01_04220 PF00700 Bacterial flagellin C-terminal helical region ABK01_04225 PF00488 MutS domain V ABK01_04225 PF01713 Smr domain ABK01_04230 PF00072 Response regulator receiver domain ABK01_04295 PF03793 PASTA domain ABK01_04295 PF03717 Penicillin-binding Protein dimerisation domain ABK01_04295 PF00905 Penicillin binding protein transpeptidase domain ABK01_04315 PF00293 NUDIX domain ABK01_04340 PF01252 Signal peptidase (SPase) II ABK01_04350 PF00013 KH domain ABK01_04350 PF12072 Domain of unknown function (DUF3552) ABK01_04350 PF01966 HD domain ABK01_04365 PF01661 Macro domain ABK01_04370 PF02661 Fic/DOC family ABK01_04415 PF10114 Sensory domain found in PocR ABK01_04415 PF12833 Helix-turn-helix domain ABK01_04420 PF00005 ABC transporter ABK01_04420 PF00664 ABC transporter transmembrane region ABK01_04425 PF00664 ABC transporter transmembrane region ABK01_04425 PF00005 ABC transporter ABK01_04425 PF08021 Siderophore-interacting FAD-binding domain ABK01_04425 PF04954 Siderophore-interacting protein ABK01_04435 PF00005 ABC transporter ABK01_04445 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ABK01_04450 PF01381 Helix-turn-helix ABK01_04455 PF00005 ABC transporter ABK01_04460 PF01032 FecCD transport family ABK01_04480 PF03852 DNA mismatch endonuclease Vsr ABK01_04490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_04490 PF02743 Cache domain ABK01_04490 PF00512 His Kinase A (phospho-acceptor) domain ABK01_04495 PF00145 C-5 cytosine-specific DNA methylase ABK01_04515 PF01979 Amidohydrolase family ABK01_04520 PF13382 Adenine deaminase C-terminal domain ABK01_04520 PF01979 Amidohydrolase family ABK01_04525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABK01_04525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABK01_04530 PF03450 CO dehydrogenase flavoprotein C-terminal domain ABK01_04530 PF00941 FAD binding domain in molybdopterin dehydrogenase ABK01_04535 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK01_04535 PF01799 [2Fe-2S] binding domain ABK01_04545 PF06445 GyrI-like small molecule binding domain ABK01_04545 PF12833 Helix-turn-helix domain ABK01_04550 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ABK01_04560 PF01381 Helix-turn-helix ABK01_04575 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04580 PF12911 N-terminal TM domain of oligopeptide transport permease C ABK01_04580 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04585 PF00005 ABC transporter ABK01_04590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_04590 PF00005 ABC transporter ABK01_04595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_04600 PF04055 Radical SAM superfamily ABK01_04600 PF00919 Uncharacterized protein family UPF0004 ABK01_04615 PF04055 Radical SAM superfamily ABK01_04615 PF06969 HemN C-terminal domain ABK01_04620 PF10502 Signal peptidase, peptidase S26 ABK01_04625 PF01668 SmpB protein ABK01_04635 PF06733 DEAD_2 ABK01_04635 PF13307 Helicase C-terminal domain ABK01_04655 PF02743 Cache domain ABK01_04655 PF00672 HAMP domain ABK01_04655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_04665 PF01202 Shikimate kinase ABK01_04675 PF02743 Cache domain ABK01_04675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_04675 PF00672 HAMP domain ABK01_04690 PF01813 ATP synthase subunit D ABK01_04695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK01_04695 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABK01_04700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK01_04700 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABK01_04700 PF16886 ATPsynthase alpha/beta subunit N-term extension ABK01_04710 PF01991 ATP synthase (E/31 kDa) subunit ABK01_04715 PF01263 Aldose 1-epimerase ABK01_04720 PF00005 ABC transporter ABK01_04720 PF00664 ABC transporter transmembrane region ABK01_04725 PF04954 Siderophore-interacting protein ABK01_04725 PF08021 Siderophore-interacting FAD-binding domain ABK01_04725 PF00664 ABC transporter transmembrane region ABK01_04725 PF00005 ABC transporter ABK01_04740 PF01702 Queuine tRNA-ribosyltransferase ABK01_04745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_04750 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04755 PF12911 N-terminal TM domain of oligopeptide transport permease C ABK01_04755 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04760 PF00005 ABC transporter ABK01_04765 PF00005 ABC transporter ABK01_04780 PF01967 MoaC family ABK01_04785 PF04055 Radical SAM superfamily ABK01_04785 PF06463 Molybdenum Cofactor Synthesis C ABK01_04800 PF02743 Cache domain ABK01_04800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_04800 PF00672 HAMP domain ABK01_04805 PF16868 NMT1-like family ABK01_04815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABK01_04835 PF00589 Phage integrase family ABK01_04835 PF02899 Phage integrase, N-terminal SAM-like domain ABK01_04840 PF00091 Tubulin/FtsZ family, GTPase domain ABK01_04840 PF12327 FtsZ family, C-terminal domain ABK01_04845 PF02491 SHS2 domain inserted in FTSA ABK01_04850 PF08478 POTRA domain, FtsQ-type ABK01_04850 PF03799 Cell division protein FtsQ ABK01_04855 PF01098 Cell cycle protein ABK01_04860 PF02875 Mur ligase family, glutamate ligase domain ABK01_04860 PF01225 Mur ligase family, catalytic domain ABK01_04860 PF08245 Mur ligase middle domain ABK01_04870 PF01795 MraW methylase family ABK01_04875 PF02381 MraZ protein, putative antitoxin-like ABK01_04880 PF01963 TraB family ABK01_04890 PF00849 RNA pseudouridylate synthase ABK01_04910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_04915 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04920 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_04920 PF12911 N-terminal TM domain of oligopeptide transport permease C ABK01_04925 PF00005 ABC transporter ABK01_04925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_04945 PF00596 Class II Aldolase and Adducin N-terminal domain ABK01_04950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK01_04950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK01_04955 PF02952 L-fucose isomerase, C-terminal domain ABK01_04955 PF07881 L-fucose isomerase, first N-terminal domain ABK01_04955 PF07882 L-fucose isomerase, second N-terminal domain ABK01_04965 PF04343 Protein of unknown function, DUF488 ABK01_04975 PF01725 Ham1 family ABK01_04980 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABK01_04985 PF00005 ABC transporter ABK01_04985 PF02687 FtsX-like permease family ABK01_04985 PF12704 MacB-like periplasmic core domain ABK01_04990 PF02743 Cache domain ABK01_04990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_04990 PF00672 HAMP domain ABK01_04995 PF13193 AMP-binding enzyme C-terminal domain ABK01_04995 PF00501 AMP-binding enzyme ABK01_05000 PF00877 NlpC/P60 family ABK01_05015 PF01743 Poly A polymerase head domain ABK01_05015 PF12627 Probable RNA and SrmB- binding site of polymerase A ABK01_05015 PF13735 tRNA nucleotidyltransferase domain 2 putative ABK01_05025 PF00860 Permease family ABK01_05030 PF00990 Diguanylate cyclase, GGDEF domain ABK01_05040 PF01025 GrpE ABK01_05045 PF00012 Hsp70 protein ABK01_05050 PF01556 DnaJ C terminal domain ABK01_05050 PF00684 DnaJ central domain ABK01_05050 PF00226 DnaJ domain ABK01_05060 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABK01_05060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABK01_05070 PF01769 Divalent cation transporter ABK01_05070 PF00571 CBS domain ABK01_05070 PF03448 MgtE intracellular N domain ABK01_05080 PF07075 Protein of unknown function (DUF1343) ABK01_05095 PF12804 MobA-like NTP transferase domain ABK01_05105 PF00860 Permease family ABK01_05115 PF01081 KDPG and KHG aldolase ABK01_05130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABK01_05135 PF10415 Fumarase C C-terminus ABK01_05135 PF00206 Lyase ABK01_05140 PF13808 DDE_Tnp_1-associated ABK01_05140 PF01609 Transposase DDE domain ABK01_05170 PF08323 Starch synthase catalytic domain ABK01_05170 PF00534 Glycosyl transferases group 1 ABK01_05185 PF02390 Putative methyltransferase ABK01_05190 PF01189 16S rRNA methyltransferase RsmB/F ABK01_05190 PF01029 NusB family ABK01_05195 PF00849 RNA pseudouridylate synthase ABK01_05195 PF01479 S4 domain ABK01_05230 PF00005 ABC transporter ABK01_05255 PF08361 MAATS-type transcriptional repressor, C-terminal region ABK01_05255 PF00440 Bacterial regulatory proteins, tetR family ABK01_05270 PF00005 ABC transporter ABK01_05275 PF02661 Fic/DOC family ABK01_05275 PF13784 Fic/DOC family N-terminal ABK01_05280 PF00005 ABC transporter ABK01_05280 PF00664 ABC transporter transmembrane region ABK01_05305 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABK01_05305 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABK01_05310 PF07977 FabA-like domain ABK01_05315 PF01106 NifU-like domain ABK01_05325 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ABK01_05325 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ABK01_05340 PF00465 Iron-containing alcohol dehydrogenase ABK01_05345 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABK01_05355 PF00672 HAMP domain ABK01_05355 PF01966 HD domain ABK01_05360 PF01547 Bacterial extracellular solute-binding protein ABK01_05365 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_05370 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_05385 PF08239 Bacterial SH3 domain ABK01_05390 PF16326 ABC transporter C-terminal domain ABK01_05390 PF00005 ABC transporter ABK01_05390 PF12848 ABC transporter ABK01_05400 PF09028 Mac 1 ABK01_05405 PF01814 Hemerythrin HHE cation binding domain ABK01_05410 PF00128 Alpha amylase, catalytic domain ABK01_05410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABK01_05410 PF03714 Bacterial pullanase-associated domain ABK01_05415 PF13416 Bacterial extracellular solute-binding protein ABK01_05420 PF16657 Maltogenic Amylase, C-terminal domain ABK01_05420 PF00128 Alpha amylase, catalytic domain ABK01_05420 PF02903 Alpha amylase, N-terminal ig-like domain ABK01_05430 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_05435 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_05440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_05440 PF00672 HAMP domain ABK01_05440 PF02743 Cache domain ABK01_05445 PF04002 RadC-like JAB domain ABK01_05450 PF12695 Alpha/beta hydrolase family ABK01_05460 PF01613 Flavin reductase like domain ABK01_05460 PF00753 Metallo-beta-lactamase superfamily ABK01_05465 PF01588 Putative tRNA binding domain ABK01_05470 PF00501 AMP-binding enzyme ABK01_05470 PF13193 AMP-binding enzyme C-terminal domain ABK01_05475 PF00291 Pyridoxal-phosphate dependent enzyme ABK01_05485 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ABK01_05485 PF12733 Cadherin-like beta sandwich domain ABK01_05505 PF10996 Beta-Casp domain ABK01_05505 PF00753 Metallo-beta-lactamase superfamily ABK01_05505 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABK01_05510 PF00588 SpoU rRNA Methylase family ABK01_05510 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABK01_05515 PF00588 SpoU rRNA Methylase family ABK01_05515 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABK01_05520 PF00391 PEP-utilising enzyme, mobile domain ABK01_05520 PF02896 PEP-utilising enzyme, TIM barrel domain ABK01_05535 PF13519 von Willebrand factor type A domain ABK01_05540 PF18663 Pallilysin beta barrel domain ABK01_05545 PF00108 Thiolase, N-terminal domain ABK01_05545 PF02803 Thiolase, C-terminal domain ABK01_05560 PF01588 Putative tRNA binding domain ABK01_05560 PF09334 tRNA synthetases class I (M) ABK01_05565 PF01479 S4 domain ABK01_05565 PF00163 Ribosomal protein S4/S9 N-terminal domain ABK01_05575 PF18269 T3SS EscN ATPase C-terminal domain ABK01_05575 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABK01_05575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK01_05580 PF02108 Flagellar assembly protein FliH ABK01_05585 PF14842 FliG N-terminal domain ABK01_05585 PF14841 FliG middle domain ABK01_05585 PF01706 FliG C-terminal domain ABK01_05590 PF01514 Secretory protein of YscJ/FliF family ABK01_05590 PF08345 Flagellar M-ring protein C-terminal ABK01_05595 PF02049 Flagellar hook-basal body complex protein FliE ABK01_05600 PF00460 Flagella basal body rod protein ABK01_05600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABK01_05610 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_05610 PF07724 AAA domain (Cdc48 subfamily) ABK01_05615 PF00227 Proteasome subunit ABK01_05620 PF01168 Alanine racemase, N-terminal domain ABK01_05620 PF00842 Alanine racemase, C-terminal domain ABK01_05625 PF03239 Iron permease FTR1 family ABK01_05630 PF10634 Fe2+ transport protein ABK01_05645 PF12704 MacB-like periplasmic core domain ABK01_05645 PF00005 ABC transporter ABK01_05645 PF02687 FtsX-like permease family ABK01_05650 PF00005 ABC transporter ABK01_05665 PF00005 ABC transporter ABK01_05665 PF12848 ABC transporter ABK01_05685 PF17922 Tetracyclin repressor-like, C-terminal domain ABK01_05685 PF00440 Bacterial regulatory proteins, tetR family ABK01_05690 PF01554 MatE ABK01_05715 PF08241 Methyltransferase domain ABK01_05725 PF01411 tRNA synthetases class II (A) ABK01_05725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK01_05725 PF02272 DHHA1 domain ABK01_05730 PF02743 Cache domain ABK01_05730 PF00672 HAMP domain ABK01_05730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_05740 PF00270 DEAD/DEAH box helicase ABK01_05740 PF00271 Helicase conserved C-terminal domain ABK01_05740 PF00570 HRDC domain ABK01_05740 PF16124 RecQ zinc-binding ABK01_05740 PF09382 RQC domain ABK01_05775 PF17936 Bacterial Ig domain ABK01_05775 PF00149 Calcineurin-like phosphoesterase ABK01_05775 PF02872 5'-nucleotidase, C-terminal domain ABK01_05780 PF00501 AMP-binding enzyme ABK01_05790 PF01230 HIT domain ABK01_05795 PF08544 GHMP kinases C terminal ABK01_05795 PF00288 GHMP kinases N terminal domain ABK01_05800 PF04026 SpoVG ABK01_05810 PF14693 Ribosomal protein TL5, C-terminal domain ABK01_05810 PF01386 Ribosomal L25p family ABK01_05815 PF01171 PP-loop family ABK01_05825 PF13180 PDZ domain ABK01_05910 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ABK01_05910 PF12733 Cadherin-like beta sandwich domain ABK01_05945 PF08264 Anticodon-binding domain of tRNA ABK01_05945 PF00133 tRNA synthetases class I (I, L, M and V) ABK01_05950 PF02690 Na+/Pi-cotransporter ABK01_05995 PF13361 UvrD-like helicase C-terminal domain ABK01_05995 PF00580 UvrD/REP helicase N-terminal domain ABK01_06000 PF13580 SIS domain ABK01_06005 PF01869 BadF/BadG/BcrA/BcrD ATPase family ABK01_06025 PF03167 Uracil DNA glycosylase superfamily ABK01_06030 PF00270 DEAD/DEAH box helicase ABK01_06030 PF00271 Helicase conserved C-terminal domain ABK01_06030 PF17764 3′ DNA-binding domain (3′BD) ABK01_06030 PF18074 Primosomal protein N C-terminal domain ABK01_06030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABK01_06035 PF01238 Phosphomannose isomerase type I ABK01_06045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABK01_06050 PF00301 Rubredoxin ABK01_06060 PF08264 Anticodon-binding domain of tRNA ABK01_06060 PF09334 tRNA synthetases class I (M) ABK01_06060 PF13603 Leucyl-tRNA synthetase, Domain 2 ABK01_06060 PF00133 tRNA synthetases class I (I, L, M and V) ABK01_06090 PF02021 Uncharacterised protein family UPF0102 ABK01_06095 PF00072 Response regulator receiver domain ABK01_06100 PF01312 FlhB HrpN YscU SpaS Family ABK01_06110 PF01245 Ribosomal protein L19 ABK01_06115 PF01746 tRNA (Guanine-1)-methyltransferase ABK01_06120 PF01782 RimM N-terminal domain ABK01_06130 PF00886 Ribosomal protein S16 ABK01_06160 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_06165 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_06175 PF00375 Sodium:dicarboxylate symporter family ABK01_06180 PF02527 rRNA small subunit methyltransferase G ABK01_06185 PF02580 D-Tyr-tRNA(Tyr) deacylase ABK01_06190 PF01195 Peptidyl-tRNA hydrolase ABK01_06195 PF00154 recA bacterial DNA recombination protein ABK01_06200 PF00005 ABC transporter ABK01_06220 PF00814 Glycoprotease family ABK01_06270 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABK01_06270 PF00578 AhpC/TSA family ABK01_06275 PF00877 NlpC/P60 family ABK01_06275 PF08239 Bacterial SH3 domain ABK01_06275 PF01476 LysM domain ABK01_06280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK01_06280 PF03466 LysR substrate binding domain ABK01_06285 PF02683 Cytochrome C biogenesis protein transmembrane region ABK01_06290 PF00578 AhpC/TSA family ABK01_06300 PF01835 MG2 domain ABK01_06300 PF07703 Alpha-2-macroglobulin bait region domain ABK01_06300 PF00207 Alpha-2-macroglobulin family ABK01_06315 PF00912 Transglycosylase ABK01_06315 PF00905 Penicillin binding protein transpeptidase domain ABK01_06335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK01_06335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK01_06335 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABK01_06340 PF13359 DDE superfamily endonuclease ABK01_06340 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABK01_06345 PF03932 CutC family ABK01_06355 PF13173 AAA domain ABK01_06355 PF13635 Domain of unknown function (DUF4143) ABK01_06375 PF00583 Acetyltransferase (GNAT) family ABK01_06375 PF13508 Acetyltransferase (GNAT) domain ABK01_06385 PF05362 Lon protease (S16) C-terminal proteolytic domain ABK01_06385 PF13654 AAA domain ABK01_06410 PF01609 Transposase DDE domain ABK01_06410 PF13808 DDE_Tnp_1-associated ABK01_06415 PF02386 Cation transport protein ABK01_06420 PF13091 PLD-like domain ABK01_06425 PF02080 TrkA-C domain ABK01_06425 PF02254 TrkA-N domain ABK01_06435 PF03702 Anhydro-N-acetylmuramic acid kinase ABK01_06445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_06450 PF02652 L-lactate permease ABK01_06455 PF00440 Bacterial regulatory proteins, tetR family ABK01_06465 PF14542 GCN5-related N-acetyl-transferase ABK01_06485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK01_06485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK01_06495 PF04324 BFD-like [2Fe-2S] binding domain ABK01_06495 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_06500 PF04324 BFD-like [2Fe-2S] binding domain ABK01_06500 PF01266 FAD dependent oxidoreductase ABK01_06505 PF07729 FCD domain ABK01_06505 PF00392 Bacterial regulatory proteins, gntR family ABK01_06520 PF01973 Protein of unknown function DUF115 ABK01_06535 PF01192 RNA polymerase Rpb6 ABK01_06545 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ABK01_06550 PF00317 Ribonucleotide reductase, all-alpha domain ABK01_06550 PF03477 ATP cone domain ABK01_06550 PF02867 Ribonucleotide reductase, barrel domain ABK01_06565 PF00941 FAD binding domain in molybdopterin dehydrogenase ABK01_06580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK01_06590 PF04851 Type III restriction enzyme, res subunit ABK01_06590 PF08463 EcoEI R protein C-terminal ABK01_06590 PF00271 Helicase conserved C-terminal domain ABK01_06590 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ABK01_06595 PF00795 Carbon-nitrogen hydrolase ABK01_06600 PF08544 GHMP kinases C terminal ABK01_06600 PF10509 Galactokinase galactose-binding signature ABK01_06615 PF01037 Lrp/AsnC ligand binding domain ABK01_06620 PF00155 Aminotransferase class I and II ABK01_06630 PF00005 ABC transporter ABK01_06630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_06635 PF00005 ABC transporter ABK01_06635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_06650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK01_06665 PF04851 Type III restriction enzyme, res subunit ABK01_06665 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ABK01_06665 PF00271 Helicase conserved C-terminal domain ABK01_06665 PF08463 EcoEI R protein C-terminal ABK01_06670 PF00795 Carbon-nitrogen hydrolase ABK01_06675 PF08544 GHMP kinases C terminal ABK01_06675 PF10509 Galactokinase galactose-binding signature ABK01_06690 PF01037 Lrp/AsnC ligand binding domain ABK01_06695 PF00155 Aminotransferase class I and II ABK01_06705 PF00005 ABC transporter ABK01_06705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_06710 PF00005 ABC transporter ABK01_06710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_06715 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_06720 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_06725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_06750 PF02557 D-alanyl-D-alanine carboxypeptidase ABK01_06755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_06755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK01_06765 PF02632 BioY family ABK01_06770 PF00005 ABC transporter ABK01_06795 PF00448 SRP54-type protein, GTPase domain ABK01_06795 PF02881 SRP54-type protein, helical bundle domain ABK01_06805 PF02687 FtsX-like permease family ABK01_06805 PF12704 MacB-like periplasmic core domain ABK01_06810 PF00005 ABC transporter ABK01_06820 PF00849 RNA pseudouridylate synthase ABK01_06830 PF00398 Ribosomal RNA adenine dimethylase ABK01_06845 PF03062 MBOAT, membrane-bound O-acyltransferase family ABK01_06865 PF01145 SPFH domain / Band 7 family ABK01_06870 PF01145 SPFH domain / Band 7 family ABK01_06875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK01_06875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK01_06880 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABK01_06880 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABK01_06900 PF00204 DNA gyrase B ABK01_06900 PF00986 DNA gyrase B subunit, carboxyl terminus ABK01_06900 PF01751 Toprim domain ABK01_06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_06905 PF03989 DNA gyrase C-terminal domain, beta-propeller ABK01_06905 PF00521 DNA gyrase/topoisomerase IV, subunit A ABK01_06915 PF10609 NUBPL iron-transfer P-loop NTPase ABK01_06925 PF01790 Prolipoprotein diacylglyceryl transferase ABK01_06935 PF03477 ATP cone domain ABK01_06950 PF00005 ABC transporter ABK01_06955 PF00392 Bacterial regulatory proteins, gntR family ABK01_06960 PF00465 Iron-containing alcohol dehydrogenase ABK01_06970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABK01_06975 PF01212 Beta-eliminating lyase ABK01_06980 PF01545 Cation efflux family ABK01_06995 PF00391 PEP-utilising enzyme, mobile domain ABK01_06995 PF02896 PEP-utilising enzyme, TIM barrel domain ABK01_06995 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABK01_07005 PF05681 Fumarate hydratase (Fumerase) ABK01_07005 PF05683 Fumarase C-terminus ABK01_07020 PF03781 Sulfatase-modifying factor enzyme 1 ABK01_07040 PF09106 Elongation factor SelB, winged helix ABK01_07040 PF09105 Elongation factor SelB, winged helix ABK01_07040 PF09107 Elongation factor SelB, winged helix ABK01_07040 PF00009 Elongation factor Tu GTP binding domain ABK01_07040 PF03144 Elongation factor Tu domain 2 ABK01_07045 PF12390 Selenocysteine synthase N terminal ABK01_07045 PF03841 L-seryl-tRNA selenium transferase ABK01_07080 PF01168 Alanine racemase, N-terminal domain ABK01_07095 PF01783 Ribosomal L32p protein family ABK01_07100 PF00550 Phosphopantetheine attachment site ABK01_07105 PF00035 Double-stranded RNA binding motif ABK01_07105 PF14622 Ribonuclease-III-like ABK01_07110 PF01430 Hsp33 protein ABK01_07130 PF01614 Bacterial transcriptional regulator ABK01_07130 PF09339 IclR helix-turn-helix domain ABK01_07135 PF01566 Natural resistance-associated macrophage protein ABK01_07150 PF01740 STAS domain ABK01_07155 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain ABK01_07155 PF07228 Stage II sporulation protein E (SpoIIE) ABK01_07160 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_07160 PF17862 AAA+ lid domain ABK01_07160 PF01434 Peptidase family M41 ABK01_07170 PF01761 3-dehydroquinate synthase ABK01_07175 PF00266 Aminotransferase class-V ABK01_07180 PF02401 LytB protein ABK01_07190 PF12706 Beta-lactamase superfamily domain ABK01_07190 PF00753 Metallo-beta-lactamase superfamily ABK01_07200 PF04773 FecR protein ABK01_07205 PF00072 Response regulator receiver domain ABK01_07205 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK01_07210 PF02637 GatB domain ABK01_07210 PF02934 GatB/GatE catalytic domain ABK01_07215 PF01425 Amidase ABK01_07225 PF02743 Cache domain ABK01_07225 PF00672 HAMP domain ABK01_07225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_07240 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK01_07240 PF00672 HAMP domain ABK01_07255 PF01250 Ribosomal protein S6 ABK01_07260 PF00436 Single-strand binding protein family ABK01_07265 PF01084 Ribosomal protein S18 ABK01_07270 PF03948 Ribosomal protein L9, C-terminal domain ABK01_07270 PF01281 Ribosomal protein L9, N-terminal domain ABK01_07275 PF03796 DnaB-like helicase C terminal domain ABK01_07275 PF00772 DnaB-like helicase N terminal domain ABK01_07290 PF09115 DNA polymerase III, delta subunit, C terminal ABK01_07300 PF04101 Glycosyltransferase family 28 C-terminal domain ABK01_07300 PF03033 Glycosyltransferase family 28 N-terminal domain ABK01_07305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABK01_07305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABK01_07310 PF09186 Domain of unknown function (DUF1949) ABK01_07310 PF01205 Uncharacterized protein family UPF0029 ABK01_07315 PF01330 RuvA N terminal domain ABK01_07320 PF01325 Iron dependent repressor, N-terminal DNA binding domain ABK01_07320 PF02742 Iron dependent repressor, metal binding and dimerisation domain ABK01_07325 PF01297 Zinc-uptake complex component A periplasmic ABK01_07330 PF00005 ABC transporter ABK01_07335 PF00950 ABC 3 transport family ABK01_07340 PF00950 ABC 3 transport family ABK01_07345 PF04463 Protein of unknown function (DUF523) ABK01_07350 PF02861 Clp amino terminal domain, pathogenicity island component ABK01_07350 PF10431 C-terminal, D2-small domain, of ClpB protein ABK01_07350 PF17871 AAA lid domain ABK01_07350 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_07350 PF07724 AAA domain (Cdc48 subfamily) ABK01_07355 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain ABK01_07365 PF02954 Bacterial regulatory protein, Fis family ABK01_07365 PF00989 PAS fold ABK01_07365 PF00158 Sigma-54 interaction domain ABK01_07375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_07375 PF00512 His Kinase A (phospho-acceptor) domain ABK01_07375 PF00989 PAS fold ABK01_07380 PF00158 Sigma-54 interaction domain ABK01_07380 PF00072 Response regulator receiver domain ABK01_07380 PF02954 Bacterial regulatory protein, Fis family ABK01_07405 PF16314 Domain of unknown function (DUF4954) ABK01_07445 PF00121 Triosephosphate isomerase ABK01_07450 PF03315 Serine dehydratase beta chain ABK01_07450 PF01842 ACT domain ABK01_07455 PF03313 Serine dehydratase alpha chain ABK01_07465 PF00672 HAMP domain ABK01_07465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_07465 PF02743 Cache domain ABK01_07475 PF02719 Polysaccharide biosynthesis protein ABK01_07480 PF03577 Peptidase family C69 ABK01_07485 PF00005 ABC transporter ABK01_07510 PF00005 ABC transporter ABK01_07520 PF00005 ABC transporter ABK01_07520 PF17755 UvrA DNA-binding domain ABK01_07520 PF17760 UvrA interaction domain ABK01_07525 PF00300 Histidine phosphatase superfamily (branch 1) ABK01_07535 PF16258 Domain of unknown function (DUF4912) ABK01_07545 PF01261 Xylose isomerase-like TIM barrel ABK01_07550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK01_07550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK01_07555 PF02653 Branched-chain amino acid transport system / permease component ABK01_07560 PF00005 ABC transporter ABK01_07565 PF13407 Periplasmic binding protein domain ABK01_07575 PF12796 Ankyrin repeats (3 copies) ABK01_07580 PF03462 PCRF domain ABK01_07580 PF00472 RF-1 domain ABK01_07620 PF13291 ACT domain ABK01_07620 PF04607 Region found in RelA / SpoT proteins ABK01_07620 PF02824 TGS domain ABK01_07635 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ABK01_07635 PF12733 Cadherin-like beta sandwich domain ABK01_07640 PF07726 ATPase family associated with various cellular activities (AAA) ABK01_07640 PF17863 AAA lid domain ABK01_07645 PF00456 Transketolase, thiamine diphosphate binding domain ABK01_07645 PF02779 Transketolase, pyrimidine binding domain ABK01_07655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_07655 PF00672 HAMP domain ABK01_07655 PF12729 Four helix bundle sensory module for signal transduction ABK01_07670 PF17131 Outer membrane lipoprotein-sorting protein ABK01_07680 PF00440 Bacterial regulatory proteins, tetR family ABK01_07690 PF14353 CpXC protein ABK01_07695 PF17820 PDZ domain ABK01_07695 PF02163 Peptidase family M50 ABK01_07710 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABK01_07710 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABK01_07710 PF13288 DXP reductoisomerase C-terminal domain ABK01_07720 PF01255 Putative undecaprenyl diphosphate synthase ABK01_07725 PF01765 Ribosome recycling factor ABK01_07730 PF00889 Elongation factor TS ABK01_07735 PF00318 Ribosomal protein S2 ABK01_07740 PF02545 Maf-like protein ABK01_07745 PF03129 Anticodon binding domain ABK01_07745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK01_07745 PF04073 Aminoacyl-tRNA editing domain ABK01_07750 PF07009 NusG domain II ABK01_07760 PF01584 CheW-like domain ABK01_07765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK01_07770 PF01513 ATP-NAD kinase ABK01_07775 PF02463 RecF/RecN/SMC N terminal domain ABK01_07795 PF00849 RNA pseudouridylate synthase ABK01_07795 PF01479 S4 domain ABK01_07800 PF04079 Segregation and condensation complex subunit ScpB ABK01_07805 PF02616 Segregation and condensation protein ScpA ABK01_07815 PF00664 ABC transporter transmembrane region ABK01_07815 PF00005 ABC transporter ABK01_07820 PF00664 ABC transporter transmembrane region ABK01_07820 PF00005 ABC transporter ABK01_07825 PF00440 Bacterial regulatory proteins, tetR family ABK01_07825 PF08361 MAATS-type transcriptional repressor, C-terminal region ABK01_07830 PF04011 LemA family ABK01_07840 PF01979 Amidohydrolase family ABK01_07845 PF03313 Serine dehydratase alpha chain ABK01_07850 PF00375 Sodium:dicarboxylate symporter family ABK01_07855 PF02824 TGS domain ABK01_07855 PF03129 Anticodon binding domain ABK01_07855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK01_07855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK01_07860 PF01098 Cell cycle protein ABK01_07865 PF00905 Penicillin binding protein transpeptidase domain ABK01_07865 PF03717 Penicillin-binding Protein dimerisation domain ABK01_07900 PF04539 Sigma-70 region 3 ABK01_07900 PF03979 Sigma-70 factor, region 1.1 ABK01_07900 PF00140 Sigma-70 factor, region 1.2 ABK01_07900 PF04545 Sigma-70, region 4 ABK01_07900 PF04542 Sigma-70 region 2 ABK01_07905 PF08275 DNA primase catalytic core, N-terminal domain ABK01_07905 PF01807 CHC2 zinc finger ABK01_07910 PF02618 YceG-like family ABK01_07935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ABK01_07935 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ABK01_07935 PF02837 Glycosyl hydrolases family 2, sugar binding domain ABK01_07935 PF00703 Glycosyl hydrolases family 2 ABK01_07945 PF00953 Glycosyl transferase family 4 ABK01_07950 PF00899 ThiF family ABK01_07955 PF00691 OmpA family ABK01_07970 PF00919 Uncharacterized protein family UPF0004 ABK01_07970 PF18693 TRAM domain ABK01_07970 PF04055 Radical SAM superfamily ABK01_08005 PF03459 TOBE domain ABK01_08005 PF17912 MalK OB fold domain ABK01_08005 PF00005 ABC transporter ABK01_08015 PF00005 ABC transporter ABK01_08015 PF00664 ABC transporter transmembrane region ABK01_08020 PF00005 ABC transporter ABK01_08020 PF00664 ABC transporter transmembrane region ABK01_08025 PF02743 Cache domain ABK01_08025 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK01_08025 PF00672 HAMP domain ABK01_08045 PF01661 Macro domain ABK01_08050 PF00365 Phosphofructokinase ABK01_08055 PF02875 Mur ligase family, glutamate ligase domain ABK01_08055 PF08245 Mur ligase middle domain ABK01_08060 PF00849 RNA pseudouridylate synthase ABK01_08070 PF00953 Glycosyl transferase family 4 ABK01_08075 PF00342 Phosphoglucose isomerase ABK01_08080 PF01926 50S ribosome-binding GTPase ABK01_08085 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ABK01_08095 PF01464 Transglycosylase SLT domain ABK01_08095 PF01476 LysM domain ABK01_08100 PF00691 OmpA family ABK01_08100 PF13488 Glycine zipper ABK01_08110 PF07075 Protein of unknown function (DUF1343) ABK01_08115 PF01915 Glycosyl hydrolase family 3 C-terminal domain ABK01_08115 PF00933 Glycosyl hydrolase family 3 N terminal domain ABK01_08125 PF12419 SNF2 Helicase protein ABK01_08125 PF00176 SNF2 family N-terminal domain ABK01_08125 PF00271 Helicase conserved C-terminal domain ABK01_08130 PF01554 MatE ABK01_08135 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABK01_08135 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABK01_08140 PF01416 tRNA pseudouridine synthase ABK01_08145 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) ABK01_08150 PF01648 4'-phosphopantetheinyl transferase superfamily ABK01_08160 PF02457 DisA bacterial checkpoint controller nucleotide-binding ABK01_08165 PF00809 Pterin binding enzyme ABK01_08175 PF03819 MazG nucleotide pyrophosphohydrolase domain ABK01_08175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABK01_08210 PF03372 Endonuclease/Exonuclease/phosphatase family ABK01_08220 PF04304 Protein of unknown function (DUF454) ABK01_08225 PF00005 ABC transporter ABK01_08235 PF00403 Heavy-metal-associated domain ABK01_08245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABK01_08245 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_08250 PF01979 Amidohydrolase family ABK01_08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_08255 PF00672 HAMP domain ABK01_08255 PF02743 Cache domain ABK01_08295 PF01235 Sodium:alanine symporter family ABK01_08300 PF04960 Glutaminase ABK01_08340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABK01_08345 PF00209 Sodium:neurotransmitter symporter family ABK01_08350 PF01612 3'-5' exonuclease ABK01_08350 PF00476 DNA polymerase family A ABK01_08350 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABK01_08350 PF01367 5'-3' exonuclease, C-terminal SAM fold ABK01_08365 PF03781 Sulfatase-modifying factor enzyme 1 ABK01_08370 PF05670 NFACT protein RNA binding domain ABK01_08380 PF08402 TOBE domain ABK01_08380 PF00005 ABC transporter ABK01_08385 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_08390 PF01547 Bacterial extracellular solute-binding protein ABK01_08405 PF07687 Peptidase dimerisation domain ABK01_08405 PF01546 Peptidase family M20/M25/M40 ABK01_08410 PF00986 DNA gyrase B subunit, carboxyl terminus ABK01_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_08410 PF01751 Toprim domain ABK01_08410 PF00204 DNA gyrase B ABK01_08415 PF08367 Peptidase M16C associated ABK01_08415 PF05193 Peptidase M16 inactive domain ABK01_08415 PF00675 Insulinase (Peptidase family M16) ABK01_08420 PF01706 FliG C-terminal domain ABK01_08420 PF14841 FliG middle domain ABK01_08420 PF14842 FliG N-terminal domain ABK01_08430 PF00005 ABC transporter ABK01_08455 PF00005 ABC transporter ABK01_08455 PF02687 FtsX-like permease family ABK01_08455 PF12704 MacB-like periplasmic core domain ABK01_08490 PF01351 Ribonuclease HII ABK01_08515 PF00881 Nitroreductase family ABK01_08520 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABK01_08520 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABK01_08525 PF03006 Haemolysin-III related ABK01_08530 PF01197 Ribosomal protein L31 ABK01_08535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK01_08535 PF07497 Rho termination factor, RNA-binding domain ABK01_08535 PF07498 Rho termination factor, N-terminal domain ABK01_08540 PF02464 Competence-damaged protein ABK01_08540 PF18146 Damage-inducible protein CinA KH domain ABK01_08540 PF00994 Probable molybdopterin binding domain ABK01_08550 PF00795 Carbon-nitrogen hydrolase ABK01_08555 PF00216 Bacterial DNA-binding protein ABK01_08560 PF01649 Ribosomal protein S20 ABK01_08570 PF04620 Flagellar filament outer layer protein Flaa ABK01_08580 PF01520 N-acetylmuramoyl-L-alanine amidase ABK01_08585 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABK01_08585 PF02843 Phosphoribosylglycinamide synthetase, C domain ABK01_08585 PF02844 Phosphoribosylglycinamide synthetase, N domain ABK01_08590 PF02348 Cytidylyltransferase ABK01_08600 PF13186 Iron-sulfur cluster-binding domain ABK01_08615 PF00072 Response regulator receiver domain ABK01_08625 PF01584 CheW-like domain ABK01_08630 PF01584 CheW-like domain ABK01_08630 PF02895 Signal transducing histidine kinase, homodimeric domain ABK01_08630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_08630 PF01627 Hpt domain ABK01_08630 PF07194 P2 response regulator binding domain ABK01_08640 PF00085 Thioredoxin ABK01_08645 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_08650 PF01743 Poly A polymerase head domain ABK01_08650 PF12626 Polymerase A arginine-rich C-terminus ABK01_08650 PF12627 Probable RNA and SrmB- binding site of polymerase A ABK01_08655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABK01_08665 PF16811 TRAP transporter T-component ABK01_08680 PF05191 Adenylate kinase, active site lid ABK01_08685 PF12631 MnmE helical domain ABK01_08685 PF01926 50S ribosome-binding GTPase ABK01_08685 PF10396 GTP-binding protein TrmE N-terminus ABK01_08705 PF04607 Region found in RelA / SpoT proteins ABK01_08710 PF00664 ABC transporter transmembrane region ABK01_08710 PF00005 ABC transporter ABK01_08720 PF00005 ABC transporter ABK01_08720 PF08021 Siderophore-interacting FAD-binding domain ABK01_08720 PF04954 Siderophore-interacting protein ABK01_08720 PF00664 ABC transporter transmembrane region ABK01_08725 PF00440 Bacterial regulatory proteins, tetR family ABK01_08730 PF03099 Biotin/lipoate A/B protein ligase family ABK01_08730 PF02237 Biotin protein ligase C terminal domain ABK01_08735 PF00929 Exonuclease ABK01_08740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABK01_08740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABK01_08740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABK01_08740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABK01_08745 PF17092 Penicillin-binding protein OB-like domain ABK01_08745 PF00905 Penicillin binding protein transpeptidase domain ABK01_08745 PF00912 Transglycosylase ABK01_08770 PF03806 AbgT putative transporter family ABK01_08790 PF01145 SPFH domain / Band 7 family ABK01_08800 PF06418 CTP synthase N-terminus ABK01_08800 PF00117 Glutamine amidotransferase class-I ABK01_08805 PF06470 SMC proteins Flexible Hinge Domain ABK01_08805 PF02463 RecF/RecN/SMC N terminal domain ABK01_08815 PF13525 Outer membrane lipoprotein ABK01_08820 PF03880 DbpA RNA binding domain ABK01_08830 PF01078 Magnesium chelatase, subunit ChlI ABK01_08830 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABK01_09035 PF03144 Elongation factor Tu domain 2 ABK01_09035 PF00009 Elongation factor Tu GTP binding domain ABK01_09035 PF03764 Elongation factor G, domain IV ABK01_09035 PF14492 Elongation Factor G, domain II ABK01_09035 PF00679 Elongation factor G C-terminus ABK01_09050 PF01728 FtsJ-like methyltransferase ABK01_09055 PF00348 Polyprenyl synthetase ABK01_09060 PF03051 Peptidase C1-like family ABK01_09065 PF00999 Sodium/hydrogen exchanger family ABK01_09075 PF17782 DprA winged helix domain ABK01_09075 PF02481 DNA recombination-mediator protein A ABK01_09080 PF01396 Topoisomerase DNA binding C4 zinc finger ABK01_09080 PF01131 DNA topoisomerase ABK01_09080 PF01751 Toprim domain ABK01_09085 PF02899 Phage integrase, N-terminal SAM-like domain ABK01_09085 PF00589 Phage integrase family ABK01_09110 PF01973 Protein of unknown function DUF115 ABK01_09130 PF08264 Anticodon-binding domain of tRNA ABK01_09130 PF00133 tRNA synthetases class I (I, L, M and V) ABK01_09130 PF10458 Valyl tRNA synthetase tRNA binding arm ABK01_09135 PF01555 DNA methylase ABK01_09150 PF13478 XdhC Rossmann domain ABK01_09150 PF02625 XdhC and CoxI family ABK01_09160 PF02127 Aminopeptidase I zinc metalloprotease (M18) ABK01_09165 PF00773 RNB domain ABK01_09175 PF01554 MatE ABK01_09180 PF10609 NUBPL iron-transfer P-loop NTPase ABK01_09185 PF00448 SRP54-type protein, GTPase domain ABK01_09190 PF00771 FHIPEP family ABK01_09195 PF01312 FlhB HrpN YscU SpaS Family ABK01_09200 PF01311 Bacterial export proteins, family 1 ABK01_09205 PF01313 Bacterial export proteins, family 3 ABK01_09210 PF00813 FliP family ABK01_09220 PF04509 CheC-like family ABK01_09220 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABK01_09225 PF02154 Flagellar motor switch protein FliM ABK01_09225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABK01_09230 PF03748 Flagellar basal body-associated protein FliL ABK01_09235 PF13677 Membrane MotB of proton-channel complex MotA/MotB ABK01_09235 PF00691 OmpA family ABK01_09240 PF01618 MotA/TolQ/ExbB proton channel family ABK01_09250 PF07559 Flagellar basal body protein FlaE ABK01_09250 PF00460 Flagella basal body rod protein ABK01_09250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABK01_09255 PF03963 Flagellar hook capping protein - N-terminal region ABK01_09265 PF02770 Acyl-CoA dehydrogenase, middle domain ABK01_09265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK01_09265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK01_09270 PF00766 Electron transfer flavoprotein FAD-binding domain ABK01_09270 PF01012 Electron transfer flavoprotein domain ABK01_09275 PF00753 Metallo-beta-lactamase superfamily ABK01_09275 PF00301 Rubredoxin ABK01_09275 PF00258 Flavodoxin ABK01_09280 PF07364 Metallopeptidase family M81 ABK01_09280 PF07171 MlrC C-terminus ABK01_09285 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_09290 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_09300 PF02146 Sir2 family ABK01_09305 PF00075 RNase H ABK01_09310 PF00793 DAHP synthetase I family ABK01_09315 PF01594 AI-2E family transporter ABK01_09320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ABK01_09325 PF01979 Amidohydrolase family ABK01_09335 PF02677 Epoxyqueuosine reductase QueH ABK01_09345 PF03471 Transporter associated domain ABK01_09345 PF00571 CBS domain ABK01_09350 PF02130 Uncharacterized protein family UPF0054 ABK01_09355 PF07698 7TM receptor with intracellular HD hydrolase ABK01_09355 PF07697 7TM-HD extracellular ABK01_09355 PF01966 HD domain ABK01_09360 PF02562 PhoH-like protein ABK01_09370 PF00293 NUDIX domain ABK01_09385 PF01475 Ferric uptake regulator family ABK01_09395 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ABK01_09400 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ABK01_09405 PF01869 BadF/BadG/BcrA/BcrD ATPase family ABK01_09410 PF03616 Sodium/glutamate symporter ABK01_09415 PF01039 Carboxyl transferase domain ABK01_09420 PF01144 Coenzyme A transferase ABK01_09425 PF01144 Coenzyme A transferase ABK01_09430 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ABK01_09435 PF00364 Biotin-requiring enzyme ABK01_09450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK01_09450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK01_09455 PF00672 HAMP domain ABK01_09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_09465 PF01625 Peptide methionine sulfoxide reductase ABK01_09465 PF01641 SelR domain ABK01_09475 PF08011 PD-(D/E)XK nuclease superfamily ABK01_09475 PF09820 Predicted AAA-ATPase ABK01_09490 PF04073 Aminoacyl-tRNA editing domain ABK01_09495 PF08323 Starch synthase catalytic domain ABK01_09495 PF00534 Glycosyl transferases group 1 ABK01_09505 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system ABK01_09510 PF00271 Helicase conserved C-terminal domain ABK01_09510 PF09369 Domain of unknown function (DUF1998) ABK01_09510 PF00270 DEAD/DEAH box helicase ABK01_09515 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ABK01_09540 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ABK01_09555 PF12950 TaqI-like C-terminal specificity domain ABK01_09555 PF07669 Eco57I restriction-modification methylase ABK01_09560 PF01555 DNA methylase ABK01_09595 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABK01_09600 PF08245 Mur ligase middle domain ABK01_09635 PF01047 MarR family ABK01_09655 PF14338 Mrr N-terminal domain ABK01_09655 PF04471 Restriction endonuclease ABK01_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK01_09695 PF07730 Histidine kinase ABK01_09695 PF00672 HAMP domain ABK01_09710 PF00459 Inositol monophosphatase family ABK01_09715 PF00005 ABC transporter ABK01_09735 PF12161 HsdM N-terminal domain ABK01_09735 PF02384 N-6 DNA Methylase ABK01_09740 PF01420 Type I restriction modification DNA specificity domain ABK01_09750 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABK01_09750 PF18766 SWI2/SNF2 ATPase ABK01_09750 PF11867 Domain of unknown function (DUF3387) ABK01_09765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK01_09765 PF10371 Domain of unknown function ABK01_09765 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ABK01_09765 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ABK01_09765 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ABK01_09770 PF12300 ATP-dependent RNA helicase RhlB ABK01_09770 PF00270 DEAD/DEAH box helicase ABK01_09770 PF00271 Helicase conserved C-terminal domain ABK01_09775 PF07687 Peptidase dimerisation domain ABK01_09775 PF01546 Peptidase family M20/M25/M40 ABK01_09795 PF02386 Cation transport protein ABK01_09805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_09805 PF00672 HAMP domain ABK01_09805 PF12729 Four helix bundle sensory module for signal transduction ABK01_09820 PF02954 Bacterial regulatory protein, Fis family ABK01_09820 PF00072 Response regulator receiver domain ABK01_09820 PF00158 Sigma-54 interaction domain ABK01_09825 PF00575 S1 RNA binding domain ABK01_09830 PF13393 Histidyl-tRNA synthetase ABK01_09840 PF02926 THUMP domain ABK01_09840 PF10672 S-adenosylmethionine-dependent methyltransferase ABK01_09840 PF01170 Putative RNA methylase family UPF0020 ABK01_09845 PF02629 CoA binding domain ABK01_09845 PF06971 Putative DNA-binding protein N-terminus ABK01_09860 PF01207 Dihydrouridine synthase (Dus) ABK01_09865 PF01026 TatD related DNase ABK01_09870 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ABK01_09870 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ABK01_09875 PF03180 NLPA lipoprotein ABK01_09890 PF02424 ApbE family ABK01_09900 PF00274 Fructose-bisphosphate aldolase class-I ABK01_09905 PF09820 Predicted AAA-ATPase ABK01_09905 PF08011 PD-(D/E)XK nuclease superfamily ABK01_09915 PF00465 Iron-containing alcohol dehydrogenase ABK01_09930 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_09935 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_09970 PF02540 NAD synthase ABK01_09980 PF04551 GcpE protein ABK01_09985 PF00515 Tetratricopeptide repeat ABK01_09985 PF13176 Tetratricopeptide repeat ABK01_10000 PF00834 Ribulose-phosphate 3 epimerase family ABK01_10020 PF01176 Translation initiation factor 1A / IF-1 ABK01_10025 PF00226 DnaJ domain ABK01_10025 PF01556 DnaJ C terminal domain ABK01_10025 PF00684 DnaJ central domain ABK01_10030 PF00696 Amino acid kinase family ABK01_10035 PF01841 Transglutaminase-like superfamily ABK01_10045 PF04545 Sigma-70, region 4 ABK01_10045 PF04542 Sigma-70 region 2 ABK01_10045 PF04539 Sigma-70 region 3 ABK01_10050 PF09190 DALR domain ABK01_10050 PF01406 tRNA synthetases class I (C) catalytic domain ABK01_10055 PF01565 FAD binding domain ABK01_10055 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABK01_10060 PF13545 Crp-like helix-turn-helix domain ABK01_10060 PF00027 Cyclic nucleotide-binding domain ABK01_10075 PF00072 Response regulator receiver domain ABK01_10075 PF01339 CheB methylesterase ABK01_10080 PF03705 CheR methyltransferase, all-alpha domain ABK01_10080 PF01739 CheR methyltransferase, SAM binding domain ABK01_10085 PF17239 Family of unknown function (DUF5312) ABK01_10110 PF13808 DDE_Tnp_1-associated ABK01_10110 PF01609 Transposase DDE domain ABK01_10115 PF00753 Metallo-beta-lactamase superfamily ABK01_10115 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABK01_10140 PF17676 LD-carboxypeptidase C-terminal domain ABK01_10140 PF02016 LD-carboxypeptidase N-terminal domain ABK01_10175 PF03129 Anticodon binding domain ABK01_10175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK01_10175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK01_10185 PF00162 Phosphoglycerate kinase ABK01_10190 PF00270 DEAD/DEAH box helicase ABK01_10190 PF00570 HRDC domain ABK01_10190 PF16124 RecQ zinc-binding ABK01_10190 PF09382 RQC domain ABK01_10190 PF00271 Helicase conserved C-terminal domain ABK01_10195 PF01048 Phosphorylase superfamily ABK01_10210 PF00005 ABC transporter ABK01_10215 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_10235 PF00849 RNA pseudouridylate synthase ABK01_10235 PF01479 S4 domain ABK01_10240 PF02743 Cache domain ABK01_10240 PF00672 HAMP domain ABK01_10240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_10260 PF00005 ABC transporter ABK01_10265 PF12683 Protein of unknown function (DUF3798) ABK01_10270 PF00892 EamA-like transporter family ABK01_10275 PF13419 Haloacid dehalogenase-like hydrolase ABK01_10280 PF07581 The GLUG motif ABK01_10280 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ABK01_10305 PF01595 Cyclin M transmembrane N-terminal domain ABK01_10305 PF03471 Transporter associated domain ABK01_10305 PF00571 CBS domain ABK01_10320 PF00692 dUTPase ABK01_10325 PF00013 KH domain ABK01_10325 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABK01_10325 PF01138 3' exoribonuclease family, domain 1 ABK01_10325 PF00575 S1 RNA binding domain ABK01_10325 PF03725 3' exoribonuclease family, domain 2 ABK01_10330 PF00312 Ribosomal protein S15 ABK01_10335 PF06574 FAD synthetase ABK01_10335 PF01687 Riboflavin kinase ABK01_10340 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABK01_10340 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABK01_10345 PF02033 Ribosome-binding factor A ABK01_10350 PF00009 Elongation factor Tu GTP binding domain ABK01_10350 PF11987 Translation-initiation factor 2 ABK01_10350 PF04760 Translation initiation factor IF-2, N-terminal region ABK01_10355 PF08529 NusA N-terminal domain ABK01_10355 PF00575 S1 RNA binding domain ABK01_10355 PF13184 NusA-like KH domain ABK01_10360 PF02576 RimP N-terminal domain ABK01_10360 PF17384 RimP C-terminal SH3 domain ABK01_10380 PF01467 Cytidylyltransferase-like ABK01_10380 PF01966 HD domain ABK01_10385 PF01467 Cytidylyltransferase-like ABK01_10390 PF01018 GTP1/OBG ABK01_10390 PF01926 50S ribosome-binding GTPase ABK01_10395 PF01016 Ribosomal L27 protein ABK01_10405 PF00829 Ribosomal prokaryotic L21 protein ABK01_10410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK01_10425 PF01042 Endoribonuclease L-PSP ABK01_10430 PF00113 Enolase, C-terminal TIM barrel domain ABK01_10430 PF03952 Enolase, N-terminal domain ABK01_10450 PF01327 Polypeptide deformylase ABK01_10455 PF00551 Formyl transferase ABK01_10455 PF02911 Formyl transferase, C-terminal domain ABK01_10465 PF00271 Helicase conserved C-terminal domain ABK01_10465 PF04851 Type III restriction enzyme, res subunit ABK01_10465 PF02151 UvrB/uvrC motif ABK01_10465 PF12344 Ultra-violet resistance protein B ABK01_10465 PF17757 UvrB interaction domain ABK01_10475 PF17757 UvrB interaction domain ABK01_10475 PF12344 Ultra-violet resistance protein B ABK01_10475 PF00271 Helicase conserved C-terminal domain ABK01_10475 PF04851 Type III restriction enzyme, res subunit ABK01_10475 PF02151 UvrB/uvrC motif ABK01_10505 PF16363 GDP-mannose 4,6 dehydratase ABK01_10510 PF04321 RmlD substrate binding domain ABK01_10525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABK01_10530 PF09820 Predicted AAA-ATPase ABK01_10530 PF08011 PD-(D/E)XK nuclease superfamily ABK01_10535 PF00483 Nucleotidyl transferase ABK01_10545 PF00535 Glycosyl transferase family 2 ABK01_10560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABK01_10560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABK01_10560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABK01_10580 PF00483 Nucleotidyl transferase ABK01_10585 PF02348 Cytidylyltransferase ABK01_10590 PF08666 SAF domain ABK01_10590 PF03102 NeuB family ABK01_10600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABK01_10600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABK01_10605 PF02350 UDP-N-acetylglucosamine 2-epimerase ABK01_10620 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK01_10625 PF02719 Polysaccharide biosynthesis protein ABK01_10645 PF01040 UbiA prenyltransferase family ABK01_10650 PF01370 NAD dependent epimerase/dehydratase family ABK01_10655 PF00893 Small Multidrug Resistance protein ABK01_10670 PF00132 Bacterial transferase hexapeptide (six repeats) ABK01_10675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK01_10680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABK01_10680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABK01_10700 PF13635 Domain of unknown function (DUF4143) ABK01_10700 PF13173 AAA domain ABK01_10705 PF00266 Aminotransferase class-V ABK01_10710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK01_10710 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABK01_10740 PF02127 Aminopeptidase I zinc metalloprotease (M18) ABK01_10745 PF00375 Sodium:dicarboxylate symporter family ABK01_10750 PF00391 PEP-utilising enzyme, mobile domain ABK01_10750 PF00224 Pyruvate kinase, barrel domain ABK01_10750 PF02887 Pyruvate kinase, alpha/beta domain ABK01_10760 PF02875 Mur ligase family, glutamate ligase domain ABK01_10760 PF08245 Mur ligase middle domain ABK01_10765 PF00156 Phosphoribosyl transferase domain ABK01_10770 PF01336 OB-fold nucleic acid binding domain ABK01_10770 PF00152 tRNA synthetases class II (D, K and N) ABK01_10780 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ABK01_10780 PF09297 NADH pyrophosphatase zinc ribbon domain ABK01_10780 PF00293 NUDIX domain ABK01_10790 PF03773 Predicted permease ABK01_10795 PF02926 THUMP domain ABK01_10795 PF01170 Putative RNA methylase family UPF0020 ABK01_10800 PF00533 BRCA1 C Terminus (BRCT) domain ABK01_10800 PF01653 NAD-dependent DNA ligase adenylation domain ABK01_10800 PF03120 NAD-dependent DNA ligase OB-fold domain ABK01_10805 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK01_10810 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK01_10825 PF00177 Ribosomal protein S7p/S5e ABK01_10830 PF00164 Ribosomal protein S12/S23 ABK01_10835 PF04983 RNA polymerase Rpb1, domain 3 ABK01_10835 PF05000 RNA polymerase Rpb1, domain 4 ABK01_10835 PF04998 RNA polymerase Rpb1, domain 5 ABK01_10835 PF04997 RNA polymerase Rpb1, domain 1 ABK01_10835 PF00623 RNA polymerase Rpb1, domain 2 ABK01_10840 PF04563 RNA polymerase beta subunit ABK01_10840 PF04561 RNA polymerase Rpb2, domain 2 ABK01_10840 PF04565 RNA polymerase Rpb2, domain 3 ABK01_10840 PF10385 RNA polymerase beta subunit external 1 domain ABK01_10840 PF00562 RNA polymerase Rpb2, domain 6 ABK01_10840 PF04560 RNA polymerase Rpb2, domain 7 ABK01_10845 PF00542 Ribosomal protein L7/L12 C-terminal domain ABK01_10845 PF16320 Ribosomal protein L7/L12 dimerisation domain ABK01_10850 PF00466 Ribosomal protein L10 ABK01_10855 PF00687 Ribosomal protein L1p/L10e family ABK01_10860 PF00298 Ribosomal protein L11, RNA binding domain ABK01_10860 PF03946 Ribosomal protein L11, N-terminal domain ABK01_10865 PF00467 KOW motif ABK01_10865 PF02357 Transcription termination factor nusG ABK01_10870 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABK01_10880 PF00471 Ribosomal protein L33 ABK01_10895 PF01316 Arginine repressor, DNA binding domain ABK01_10895 PF02863 Arginine repressor, C-terminal domain ABK01_10900 PF02547 Queuosine biosynthesis protein ABK01_10905 PF01479 S4 domain ABK01_10905 PF00849 RNA pseudouridylate synthase ABK01_10915 PF02779 Transketolase, pyrimidine binding domain ABK01_10915 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABK01_10915 PF02780 Transketolase, C-terminal domain ABK01_10920 PF00521 DNA gyrase/topoisomerase IV, subunit A ABK01_10925 PF00501 AMP-binding enzyme ABK01_10935 PF00708 Acylphosphatase ABK01_10970 PF05524 PEP-utilising enzyme, N-terminal ABK01_10970 PF00391 PEP-utilising enzyme, mobile domain ABK01_10970 PF02896 PEP-utilising enzyme, TIM barrel domain ABK01_10980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABK01_10980 PF01926 50S ribosome-binding GTPase ABK01_11005 PF01368 DHH family ABK01_11005 PF02272 DHHA1 domain ABK01_11010 PF00830 Ribosomal L28 family ABK01_11025 PF12833 Helix-turn-helix domain ABK01_11025 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABK01_11040 PF00005 ABC transporter ABK01_11050 PF08281 Sigma-70, region 4 ABK01_11050 PF04542 Sigma-70 region 2 ABK01_11070 PF01343 Peptidase family S49 ABK01_11075 PF00005 ABC transporter ABK01_11075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_11080 PF00005 ABC transporter ABK01_11080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK01_11085 PF12911 N-terminal TM domain of oligopeptide transport permease C ABK01_11085 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_11090 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_11095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK01_11100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABK01_11100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABK01_11105 PF00698 Acyl transferase domain ABK01_11115 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK01_11115 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK01_11120 PF07977 FabA-like domain ABK01_11125 PF12146 Serine aminopeptidase, S33 ABK01_11175 PF02542 YgbB family ABK01_11180 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABK01_11180 PF02542 YgbB family ABK01_11190 PF00672 HAMP domain ABK01_11190 PF12729 Four helix bundle sensory module for signal transduction ABK01_11190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_11195 PF02229 Transcriptional Coactivator p15 (PC4) ABK01_11200 PF18073 Rubredoxin metal binding domain ABK01_11200 PF06745 KaiC ABK01_11205 PF00595 PDZ domain ABK01_11210 PF01475 Ferric uptake regulator family ABK01_11215 PF02743 Cache domain ABK01_11215 PF00672 HAMP domain ABK01_11215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_11225 PF17762 HTH domain found in ParB protein ABK01_11225 PF02195 ParB-like nuclease domain ABK01_11230 PF13614 AAA domain ABK01_11235 PF08011 PD-(D/E)XK nuclease superfamily ABK01_11235 PF09820 Predicted AAA-ATPase ABK01_11240 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_11240 PF05362 Lon protease (S16) C-terminal proteolytic domain ABK01_11240 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABK01_11265 PF02384 N-6 DNA Methylase ABK01_11280 PF04324 BFD-like [2Fe-2S] binding domain ABK01_11280 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK01_11285 PF01266 FAD dependent oxidoreductase ABK01_11290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK01_11290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK01_11300 PF00440 Bacterial regulatory proteins, tetR family ABK01_11310 PF04954 Siderophore-interacting protein ABK01_11310 PF08021 Siderophore-interacting FAD-binding domain ABK01_11310 PF00005 ABC transporter ABK01_11310 PF00664 ABC transporter transmembrane region ABK01_11315 PF00005 ABC transporter ABK01_11315 PF00664 ABC transporter transmembrane region ABK01_11330 PF00528 Binding-protein-dependent transport system inner membrane component ABK01_11335 PF00005 ABC transporter ABK01_11335 PF08402 TOBE domain ABK01_11345 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ABK01_11350 PF02446 4-alpha-glucanotransferase ABK01_11365 PF00005 ABC transporter ABK01_11365 PF00664 ABC transporter transmembrane region ABK01_11370 PF00005 ABC transporter ABK01_11370 PF00664 ABC transporter transmembrane region ABK01_11385 PF00005 ABC transporter ABK01_11390 PF00664 ABC transporter transmembrane region ABK01_11390 PF00005 ABC transporter ABK01_11395 PF00005 ABC transporter ABK01_11395 PF00664 ABC transporter transmembrane region ABK01_11400 PF00664 ABC transporter transmembrane region ABK01_11400 PF00005 ABC transporter ABK01_11410 PF17932 Tetracyclin repressor-like, C-terminal domain ABK01_11410 PF00440 Bacterial regulatory proteins, tetR family ABK01_11425 PF07804 HipA-like C-terminal domain ABK01_11435 PF03193 RsgA GTPase ABK01_11440 PF01177 Asp/Glu/Hydantoin racemase ABK01_11455 PF00152 tRNA synthetases class II (D, K and N) ABK01_11455 PF01336 OB-fold nucleic acid binding domain ABK01_11455 PF02938 GAD domain ABK01_11460 PF07859 alpha/beta hydrolase fold ABK01_11465 PF16325 Peptidase family U32 C-terminal domain ABK01_11465 PF01136 Peptidase family U32 ABK01_11480 PF02311 AraC-like ligand binding domain ABK01_11480 PF12833 Helix-turn-helix domain ABK01_11485 PF01225 Mur ligase family, catalytic domain ABK01_11485 PF02875 Mur ligase family, glutamate ligase domain ABK01_11485 PF08245 Mur ligase middle domain ABK01_11495 PF07724 AAA domain (Cdc48 subfamily) ABK01_11495 PF10431 C-terminal, D2-small domain, of ClpB protein ABK01_11495 PF06689 ClpX C4-type zinc finger ABK01_11500 PF00574 Clp protease ABK01_11505 PF05697 Bacterial trigger factor protein (TF) ABK01_11505 PF05698 Bacterial trigger factor protein (TF) C-terminus ABK01_11505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK01_11525 PF00266 Aminotransferase class-V ABK01_11550 PF00586 AIR synthase related protein, N-terminal domain ABK01_11550 PF02769 AIR synthase related protein, C-terminal domain ABK01_11555 PF10135 Rod binding protein ABK01_11560 PF00460 Flagella basal body rod protein ABK01_11560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABK01_11565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABK01_11565 PF00460 Flagella basal body rod protein ABK01_11610 PF04452 RNA methyltransferase ABK01_11615 PF01699 Sodium/calcium exchanger protein ABK01_11620 PF00171 Aldehyde dehydrogenase family ABK01_11625 PF02770 Acyl-CoA dehydrogenase, middle domain ABK01_11625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK01_11625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK01_11630 PF01012 Electron transfer flavoprotein domain ABK01_11635 PF01012 Electron transfer flavoprotein domain ABK01_11635 PF00766 Electron transfer flavoprotein FAD-binding domain ABK01_11695 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABK01_11695 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain ABK01_11695 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABK01_11715 PF04542 Sigma-70 region 2 ABK01_11715 PF04539 Sigma-70 region 3 ABK01_11715 PF04545 Sigma-70, region 4 ABK01_11725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK01_11725 PF00672 HAMP domain ABK01_11725 PF02743 Cache domain ABK01_11735 PF08676 MutL C terminal dimerisation domain ABK01_11735 PF01119 DNA mismatch repair protein, C-terminal domain ABK01_11740 PF02609 Exonuclease VII small subunit ABK01_11745 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABK01_11745 PF08501 Shikimate dehydrogenase substrate binding domain ABK01_11750 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABK01_11760 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABK01_11760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABK01_11760 PF14579 Helix-hairpin-helix motif ABK01_11760 PF02811 PHP domain ABK01_11775 PF01709 Transcriptional regulator ABK01_11780 PF13416 Bacterial extracellular solute-binding protein ABK01_11790 PF02861 Clp amino terminal domain, pathogenicity island component ABK01_11790 PF00004 ATPase family associated with various cellular activities (AAA) ABK01_11790 PF07724 AAA domain (Cdc48 subfamily) ABK01_11790 PF17871 AAA lid domain ABK01_11790 PF10431 C-terminal, D2-small domain, of ClpB protein