locus-tag	class	description
ABK01_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ABK01_00030	COG1177	transmembrane transport
ABK01_00045	COG1176	ABC-type spermidine putrescine transport system, permease component I
ABK01_00050	COG3842	ATPase activity
ABK01_00060	COG1744	ABC transporter substrate-binding protein PnrA-like
ABK01_00065	COG1129	ABC transporter
ABK01_00070	COG4603	Belongs to the binding-protein-dependent transport system permease family
ABK01_00075	COG1079	Belongs to the binding-protein-dependent transport system permease family
ABK01_00080	COG4942	peptidase
ABK01_00095	COG3177	Filamentation induced by cAMP protein fic
ABK01_00115	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ABK01_00120	COG1253	flavin adenine dinucleotide binding
ABK01_00125	COG4536	flavin adenine dinucleotide binding
ABK01_00135	COG3118	belongs to the thioredoxin family
ABK01_00140	COG1692	metallophosphoesterase
ABK01_00145	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ABK01_00165	COG0719	Fe-S assembly protein
ABK01_00205	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
ABK01_00215	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK01_00220	COG4750	Nucleotidyl transferase
ABK01_00225	COG0039	L-malate dehydrogenase activity
ABK01_00230	COG1132	(ABC) transporter
ABK01_00245	COG0500	methyltransferase
ABK01_00255	COG2375	cellular response to nickel ion
ABK01_00255	COG1132	(ABC) transporter
ABK01_00285	COG0534	Mate efflux family protein
ABK01_00290	COG3848	Pyruvate phosphate dikinase
ABK01_00290	COG0574	Belongs to the PEP-utilizing enzyme family
ABK01_00295	COG1309	transcriptional regulator
ABK01_00320	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABK01_00325	COG1024	Enoyl-CoA hydratase
ABK01_00330	COG0427	acetyl-CoA hydrolase
ABK01_00365	COG0203	ribosomal protein L17
ABK01_00370	COG0202	RNA polymerase activity
ABK01_00375	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ABK01_00385	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ABK01_00395	COG0200	Binds to the 23S rRNA
ABK01_00405	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ABK01_00415	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
ABK01_00420	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
ABK01_00430	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
ABK01_00435	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ABK01_00440	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ABK01_00445	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ABK01_00450	COG0255	Belongs to the universal ribosomal protein uL29 family
ABK01_00460	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ABK01_00465	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
ABK01_00475	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ABK01_00480	COG0089	rRNA binding
ABK01_00485	COG0088	Forms part of the polypeptide exit tunnel
ABK01_00490	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
ABK01_00495	COG0051	transcription antitermination factor activity, RNA binding
ABK01_00500	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ABK01_00515	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABK01_00525	COG4149	molybdate abc transporter
ABK01_00585	COG0741	lytic transglycosylase activity
ABK01_00590	COG1968	undecaprenyl-diphosphatase activity
ABK01_00595	COG1674	ftsk spoiiie
ABK01_00615	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABK01_00620	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ABK01_00625	COG0084	hydrolase, TatD family'
ABK01_00635	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ABK01_00690	COG0714	Associated with various cellular activities
ABK01_00715	COG0714	Associated with various cellular activities
ABK01_00725	COG2425	protein containing a von Willebrand factor type A (vWA) domain
ABK01_00730	COG0826	peptidase U32
ABK01_00740	COG0822	iron-sulfur transferase activity
ABK01_00745	COG2255	four-way junction helicase activity
ABK01_00755	COG0445	tRNA wobble uridine modification
ABK01_00765	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
ABK01_00780	COG1757	Na H antiporter
ABK01_00785	COG2199	diguanylate cyclase activity
ABK01_00785	COG2203	Gaf domain
ABK01_00790	COG3706	GGDEF domain
ABK01_00810	COG0488	(ABC) transporter
ABK01_00815	COG0438	transferase activity, transferring glycosyl groups
ABK01_00830	COG0673	inositol 2-dehydrogenase activity
ABK01_00835	COG1172	Belongs to the binding-protein-dependent transport system permease family
ABK01_00840	COG1129	ABC transporter
ABK01_00845	COG1879	ABC-type sugar transport system periplasmic component
ABK01_00860	COG0673	inositol 2-dehydrogenase activity
ABK01_00865	COG0191	fructose-bisphosphate aldolase activity
ABK01_00870	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABK01_00880	COG1349	DNA-binding transcription factor activity
ABK01_00885	COG1012	belongs to the aldehyde dehydrogenase family
ABK01_00900	COG0425	Belongs to the sulfur carrier protein TusA family
ABK01_00915	COG0733	neurotransmitter:sodium symporter activity
ABK01_00930	COG0543	2 iron, 2 sulfur cluster binding
ABK01_00935	COG1639	'signal transduction protein
ABK01_00940	COG1121	(ABC) transporter
ABK01_00945	COG1695	Transcriptional regulator
ABK01_00955	COG1983	PspC domain protein
ABK01_01005	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABK01_01005	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABK01_01005	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABK01_01015	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABK01_01020	COG1640	4-alpha-glucanotransferase
ABK01_01025	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
ABK01_01035	COG4452	Inner membrane protein CreD
ABK01_01040	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABK01_01060	COG0237	dephospho-CoA kinase activity
ABK01_01065	COG2885	chlorophyll binding
ABK01_01070	COG0739	heme binding
ABK01_01085	COG1114	Component of the transport system for branched-chain amino acids
ABK01_01090	COG2759	Belongs to the formate--tetrahydrofolate ligase family
ABK01_01095	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ABK01_01100	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABK01_01105	COG0423	glycine-tRNA ligase activity
ABK01_01115	COG0584	glycerophosphoryl diester phosphodiesterase
ABK01_01125	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ABK01_01125	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ABK01_01135	COG0205	6-phosphofructokinase activity
ABK01_01140	COG0516	GMP reductase activity
ABK01_01140	COG0517	IMP dehydrogenase activity
ABK01_01150	COG1028	Short-chain dehydrogenase reductase Sdr
ABK01_01155	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
ABK01_01160	COG2204	response regulator
ABK01_01200	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABK01_01225	COG2217	Heavy metal translocating P-type atpase
ABK01_01230	COG0640	Transcriptional regulator
ABK01_01245	COG0110	maltose O-acetyltransferase activity
ABK01_01325	COG0484	heat shock protein binding
ABK01_01330	COG0024	Methionine aminopeptidase
ABK01_01335	COG1054	Belongs to the UPF0176 family
ABK01_01365	COG2089	acid synthase
ABK01_01370	COG0592	DNA-directed DNA polymerase activity
ABK01_01375	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ABK01_01415	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ABK01_01425	COG4555	ABC transporter
ABK01_01450	COG2378	regulation of single-species biofilm formation
ABK01_01470	COG2378	regulation of single-species biofilm formation
ABK01_01475	COG1002	Type II restriction enzyme, methylase subunits
ABK01_01515	COG1132	(ABC) transporter
ABK01_01525	COG0545	Peptidyl-prolyl cis-trans isomerase
ABK01_01530	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABK01_01535	COG1881	PFAM PEBP family protein
ABK01_01560	COG0739	heme binding
ABK01_01565	COG1686	Belongs to the peptidase S11 family
ABK01_01585	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ABK01_01590	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK01_01645	COG3608	succinylglutamate desuccinylase aspartoacylase
ABK01_01645	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
ABK01_01655	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ABK01_01670	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABK01_01675	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
ABK01_01720	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABK01_01740	COG1131	(ABC) transporter
ABK01_01755	COG1472	Belongs to the glycosyl hydrolase 3 family
ABK01_01760	COG5016	pyruvate
ABK01_01760	COG0511	ligase activity, forming carbon-carbon bonds
ABK01_01765	COG1115	amino acid carrier protein
ABK01_01770	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABK01_01775	COG3437	response regulator, receiver
ABK01_01780	COG1671	Belongs to the UPF0178 family
ABK01_01785	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
ABK01_01800	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ABK01_01820	COG0351	phosphomethylpyrimidine kinase
ABK01_01830	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABK01_01830	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
ABK01_01835	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABK01_01840	COG1120	ATPase activity
ABK01_01845	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABK01_01850	COG3585	molybdate ion transport
ABK01_01865	COG0745	RESPONSE REGULATOR receiver
ABK01_01870	COG3850	Histidine kinase
ABK01_01870	COG5002	protein histidine kinase activity
ABK01_01880	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABK01_01890	COG2011	ABC-type metal ion transport system permease component
ABK01_01900	COG1879	ABC-type sugar transport system periplasmic component
ABK01_01910	COG1172	Belongs to the binding-protein-dependent transport system permease family
ABK01_01925	COG1070	Carbohydrate kinase
ABK01_01945	COG1175	transmembrane transport
ABK01_01950	COG0395	ABC-type sugar transport system, permease component
ABK01_01970	COG0840	transmembrane signaling receptor activity
ABK01_02020	COG0037	tRNA processing
ABK01_02060	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ABK01_02065	COG4977	sequence-specific DNA binding
ABK01_02065	COG1917	Cupin 2, conserved barrel domain protein
ABK01_02090	COG1129	ABC transporter
ABK01_02095	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ABK01_02115	COG0739	heme binding
ABK01_02140	COG1129	ABC transporter
ABK01_02190	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABK01_02205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABK01_02210	COG0156	8-amino-7-oxononanoate synthase activity
ABK01_02240	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABK01_02245	COG1120	ATPase activity
ABK01_02250	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ABK01_02275	COG1193	negative regulation of DNA recombination
ABK01_02285	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ABK01_02330	COG0629	single-stranded DNA binding
ABK01_02335	COG0281	malic enzyme
ABK01_02340	COG0513	Belongs to the DEAD box helicase family
ABK01_02345	COG0438	transferase activity, transferring glycosyl groups
ABK01_02380	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ABK01_02385	COG0706	membrane insertase activity
ABK01_02390	COG1847	R3H domain protein
ABK01_02400	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABK01_02405	COG1862	Preprotein translocase
ABK01_02410	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABK01_02415	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABK01_02420	COG1040	competence protein
ABK01_02430	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABK01_02440	COG0058	SHG alpha-glucan phosphorylase activity
ABK01_02455	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
ABK01_02460	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABK01_02470	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
ABK01_02475	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ABK01_02480	COG0457	Tetratricopeptide repeat
ABK01_02485	COG0733	neurotransmitter:sodium symporter activity
ABK01_02490	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
ABK01_02505	COG0519	Catalyzes the synthesis of GMP from XMP
ABK01_02540	COG0481	GTPase activity
ABK01_02555	COG0018	arginyl-trna synthetase
ABK01_02560	COG2235	arginine
ABK01_02565	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ABK01_02575	COG1288	antiporter activity
ABK01_02585	COG0653	protein targeting
ABK01_02600	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ABK01_02615	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
ABK01_02675	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABK01_02680	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ABK01_02685	COG0783	Belongs to the Dps family
ABK01_02690	COG0326	Molecular chaperone. Has ATPase activity
ABK01_02700	COG0681	Belongs to the peptidase S26 family
ABK01_02710	COG0740	serine-type endopeptidase activity
ABK01_02715	COG1744	ABC transporter substrate-binding protein PnrA-like
ABK01_02720	COG3845	ABC transporter
ABK01_02725	COG4603	Belongs to the binding-protein-dependent transport system permease family
ABK01_02730	COG1079	Belongs to the binding-protein-dependent transport system permease family
ABK01_02855	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
ABK01_02860	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ABK01_02865	COG2203	Gaf domain
ABK01_02865	COG4251	negative regulation of phosphorylation
ABK01_02865	COG5001	Diguanylate cyclase
ABK01_02865	COG3706	GGDEF domain
ABK01_02870	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ABK01_02875	COG0205	6-phosphofructokinase activity
ABK01_02880	COG4211	Belongs to the binding-protein-dependent transport system permease family
ABK01_02885	COG1129	ABC transporter
ABK01_02895	COG1879	ABC-type sugar transport system periplasmic component
ABK01_02905	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ABK01_02915	COG0012	GTP binding
ABK01_02950	COG1028	Short-chain dehydrogenase reductase Sdr
ABK01_02960	COG4978	Transcriptional regulator
ABK01_02960	COG0789	Transcriptional regulator
ABK01_02965	COG1288	antiporter activity
ABK01_02975	COG1288	antiporter activity
ABK01_02980	COG2887	Belongs to the helicase family. UvrD subfamily
ABK01_03000	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ABK01_03005	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ABK01_03030	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABK01_03040	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ABK01_03090	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABK01_03095	COG0513	Belongs to the DEAD box helicase family
ABK01_03105	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
ABK01_03140	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK01_03145	COG1136	(ABC) transporter
ABK01_03175	COG1136	(ABC) transporter
ABK01_03175	COG0577	efflux transmembrane transporter activity
ABK01_03215	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABK01_03240	COG2183	response to ionizing radiation
ABK01_03275	COG0395	ABC-type sugar transport system, permease component
ABK01_03280	COG4209	transmembrane transport
ABK01_03300	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABK01_03305	COG1570	exodeoxyribonuclease VII activity
ABK01_03325	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ABK01_03335	COG0450	alkyl hydroperoxide reductase
ABK01_03345	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
ABK01_03350	COG0071	Belongs to the small heat shock protein (HSP20) family
ABK01_03355	COG0019	diaminopimelate decarboxylase activity
ABK01_03360	COG0716	FMN binding
ABK01_03370	COG1956	GAF domain-containing protein
ABK01_03380	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABK01_03390	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABK01_03395	COG1245	4Fe-4S binding domain
ABK01_03395	COG2878	Part of a membrane complex involved in electron transport
ABK01_03400	COG4657	Part of a membrane complex involved in electron transport
ABK01_03410	COG4659	FMN binding
ABK01_03415	COG4658	electron transport chain
ABK01_03420	COG4656	Part of a membrane complex involved in electron transport
ABK01_03425	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ABK01_03440	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
ABK01_03445	COG0825	malonyl-CoA metabolic process
ABK01_03455	COG0540	Belongs to the ATCase OTCase family
ABK01_03460	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
ABK01_03465	COG0543	2 iron, 2 sulfur cluster binding
ABK01_03470	COG0167	dihydroorotate dehydrogenase activity
ABK01_03475	COG0284	orotidine-5'-phosphate decarboxylase activity
ABK01_03480	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ABK01_03485	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ABK01_03495	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABK01_03505	COG0613	PHP domain protein
ABK01_03615	COG0564	pseudouridine synthase activity
ABK01_03620	COG0588	phosphoglycerate mutase activity
ABK01_03645	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABK01_03670	COG0419	ATPase involved in DNA repair
ABK01_03675	COG0420	3'-5' exonuclease activity
ABK01_03680	COG0803	Belongs to the bacterial solute-binding protein 9 family
ABK01_03685	COG1757	Na H antiporter
ABK01_03695	COG0728	peptidoglycan biosynthetic process
ABK01_03705	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ABK01_03720	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ABK01_03735	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ABK01_03735	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ABK01_03740	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABK01_03745	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABK01_03760	COG0459	protein refolding
ABK01_03780	COG0280	phosphate acetyltransferase
ABK01_03785	COG0492	ferredoxin-NADP+ reductase activity
ABK01_03790	COG1472	Belongs to the glycosyl hydrolase 3 family
ABK01_03795	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
ABK01_03800	COG1966	Carbon starvation protein
ABK01_03805	COG1181	Belongs to the D-alanine--D-alanine ligase family
ABK01_03850	COG1102	Psort location Cytoplasmic, score
ABK01_03860	COG0840	transmembrane signaling receptor activity
ABK01_03865	COG0793	Belongs to the peptidase S41A family
ABK01_03890	COG0534	Mate efflux family protein
ABK01_03895	COG1086	Polysaccharide biosynthesis protein
ABK01_03905	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABK01_03925	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABK01_03940	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABK01_03985	COG0762	integral membrane protein
ABK01_03995	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
ABK01_04000	COG0180	Tryptophanyl-tRNA synthetase
ABK01_04005	COG0670	Belongs to the BI1 family
ABK01_04020	COG0322	excinuclease ABC activity
ABK01_04025	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ABK01_04045	COG1774	PSP1 C-terminal conserved region
ABK01_04060	COG0739	heme binding
ABK01_04070	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ABK01_04075	COG2911	Protein conserved in bacteria
ABK01_04080	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABK01_04090	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ABK01_04115	COG0739	heme binding
ABK01_04150	COG2502	aspartate--ammonia ligase
ABK01_04160	COG0301	tRNA thio-modification
ABK01_04175	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ABK01_04195	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABK01_04225	COG1193	negative regulation of DNA recombination
ABK01_04290	COG2604	Protein of unknown function DUF115
ABK01_04295	COG0768	penicillin binding
ABK01_04315	COG0494	nUDIX hydrolase
ABK01_04340	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ABK01_04345	COG0457	Tetratricopeptide repeat
ABK01_04350	COG1418	mRNA catabolic process
ABK01_04370	COG2184	nucleotidyltransferase activity
ABK01_04425	COG1132	(ABC) transporter
ABK01_04425	COG2375	cellular response to nickel ion
ABK01_04435	COG1129	ABC transporter
ABK01_04445	COG3549	Plasmid maintenance system killer
ABK01_04455	COG1120	ATPase activity
ABK01_04460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABK01_04515	COG0402	S-adenosylhomocysteine deaminase activity
ABK01_04520	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
ABK01_04525	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ABK01_04530	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
ABK01_04545	COG2207	Transcriptional regulator
ABK01_04545	COG3708	Transcriptional regulator
ABK01_04550	COG4115	mRNA cleavage
ABK01_04595	COG0747	negative chemotaxis
ABK01_04600	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABK01_04615	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABK01_04625	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ABK01_04635	COG1199	ATP-dependent helicase activity
ABK01_04655	COG0840	transmembrane signaling receptor activity
ABK01_04665	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ABK01_04675	COG0840	transmembrane signaling receptor activity
ABK01_04685	COG1269	ATP hydrolysis coupled proton transport
ABK01_04690	COG1394	ATPase activity, coupled to movement of substances
ABK01_04695	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
ABK01_04700	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
ABK01_04710	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
ABK01_04715	COG2017	converts alpha-aldose to the beta-anomer
ABK01_04720	COG1132	(ABC) transporter
ABK01_04740	COG0343	queuine tRNA-ribosyltransferase activity
ABK01_04745	COG0747	negative chemotaxis
ABK01_04750	COG0601	transmembrane transport
ABK01_04755	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABK01_04760	COG1126	abc transporter atp-binding protein
ABK01_04765	COG1124	(ABC) transporter
ABK01_04805	COG2358	TRAP transporter, solute receptor (TAXI family
ABK01_04815	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ABK01_04840	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABK01_04850	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ABK01_04855	COG0772	Belongs to the SEDS family
ABK01_04860	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ABK01_04870	COG0275	rRNA processing
ABK01_04875	COG2001	Belongs to the MraZ family
ABK01_04880	COG3735	TraB family
ABK01_04890	COG0564	pseudouridine synthase activity
ABK01_04910	COG4166	transmembrane transport
ABK01_04920	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABK01_04945	COG0235	Class ii aldolase
ABK01_04950	COG1070	Carbohydrate kinase
ABK01_04955	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
ABK01_04965	COG3189	MarR family transcriptional regulator
ABK01_04975	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ABK01_04980	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
ABK01_04985	COG1136	(ABC) transporter
ABK01_04985	COG0577	efflux transmembrane transporter activity
ABK01_04990	COG0840	transmembrane signaling receptor activity
ABK01_04995	COG0318	PFAM AMP-dependent synthetase and ligase
ABK01_05000	COG0791	NLP P60 protein
ABK01_05015	COG0617	tRNA 3'-terminal CCA addition
ABK01_05025	COG2252	PERMEase
ABK01_05040	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ABK01_05045	COG0443	Heat shock 70 kDa protein
ABK01_05050	COG0484	heat shock protein binding
ABK01_05065	COG0170	dolichyl monophosphate biosynthetic process
ABK01_05070	COG2239	Acts as a magnesium transporter
ABK01_05080	COG3876	Protein conserved in bacteria
ABK01_05095	COG0746	molybdenum cofactor guanylyltransferase activity
ABK01_05120	COG0739	heme binding
ABK01_05130	COG0295	cytidine deaminase activity
ABK01_05135	COG1027	Aspartate ammonia-lyase
ABK01_05140	COG5433	transposase activity
ABK01_05170	COG0297	glycogen (starch) synthase activity
ABK01_05185	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABK01_05190	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ABK01_05190	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ABK01_05230	COG1129	ABC transporter
ABK01_05270	COG1129	ABC transporter
ABK01_05275	COG3177	Filamentation induced by cAMP protein fic
ABK01_05305	COG0427	acetyl-CoA hydrolase
ABK01_05310	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ABK01_05315	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ABK01_05340	COG1454	alcohol dehydrogenase
ABK01_05345	COG0802	atpase or kinase
ABK01_05355	COG3437	response regulator, receiver
ABK01_05355	COG2770	Histidine kinase
ABK01_05365	COG1175	transmembrane transport
ABK01_05370	COG0395	ABC-type sugar transport system, permease component
ABK01_05390	COG0488	(ABC) transporter
ABK01_05405	COG2703	oxygen carrier activity
ABK01_05410	COG1523	belongs to the glycosyl hydrolase 13 family
ABK01_05415	COG2182	Extracellular solute-binding protein
ABK01_05430	COG1175	transmembrane transport
ABK01_05435	COG3833	ABC-type maltose transport systems, permease component
ABK01_05440	COG0840	transmembrane signaling receptor activity
ABK01_05460	COG0426	domain, Protein
ABK01_05460	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK01_05465	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK01_05470	COG0318	PFAM AMP-dependent synthetase and ligase
ABK01_05505	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ABK01_05515	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABK01_05520	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABK01_05520	COG0574	Belongs to the PEP-utilizing enzyme family
ABK01_05535	COG2304	oxidoreductase activity
ABK01_05545	COG0183	Belongs to the thiolase family
ABK01_05560	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK01_05560	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK01_05565	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ABK01_05575	COG1157	protein secretion by the type III secretion system
ABK01_05580	COG1317	bacterial-type flagellum organization
ABK01_05590	COG1766	The M ring may be actively involved in energy transduction
ABK01_05610	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
ABK01_05615	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ABK01_05620	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ABK01_05625	COG0672	)-iron permease
ABK01_05630	COG3470	protein probably involved in high-affinity Fe2 transport
ABK01_05645	COG1136	(ABC) transporter
ABK01_05645	COG0577	efflux transmembrane transporter activity
ABK01_05650	COG1136	(ABC) transporter
ABK01_05665	COG0488	(ABC) transporter
ABK01_05685	COG1309	transcriptional regulator
ABK01_05690	COG0534	Mate efflux family protein
ABK01_05715	COG2226	methyltransferase
ABK01_05725	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ABK01_05730	COG0840	transmembrane signaling receptor activity
ABK01_05740	COG0514	ATP-dependent DNA helicase (RecQ)
ABK01_05775	COG0737	Belongs to the 5'-nucleotidase family
ABK01_05780	COG1022	Amp-dependent synthetase and ligase
ABK01_05790	COG0537	adenosine 5'-monophosphoramidase activity
ABK01_05795	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
ABK01_05800	COG2088	sporulation resulting in formation of a cellular spore
ABK01_05810	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
ABK01_05815	COG0037	tRNA processing
ABK01_05820	COG0457	Tetratricopeptide repeat
ABK01_05825	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABK01_05945	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ABK01_05950	COG1283	sodium-dependent phosphate transmembrane transporter activity
ABK01_06005	COG2971	BadF BadG BcrA BcrD
ABK01_06025	COG1573	uracil-dna glycosylase
ABK01_06030	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABK01_06035	COG1482	cell wall glycoprotein biosynthetic process
ABK01_06060	COG0495	leucyl-tRNA aminoacylation
ABK01_06100	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABK01_06110	COG0335	large ribosomal subunit rRNA binding
ABK01_06115	COG0336	Belongs to the RNA methyltransferase TrmD family
ABK01_06120	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABK01_06125	COG1837	Belongs to the UPF0109 family
ABK01_06130	COG0228	four-way junction DNA binding
ABK01_06160	COG0395	ABC-type sugar transport system, permease component
ABK01_06165	COG4209	transmembrane transport
ABK01_06175	COG1301	dicarboxylic acid transport
ABK01_06180	COG0357	Ribosomal RNA small subunit methyltransferase G
ABK01_06190	COG0193	aminoacyl-tRNA hydrolase activity
ABK01_06195	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ABK01_06200	COG1136	(ABC) transporter
ABK01_06220	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
ABK01_06280	COG0583	DNA-binding transcription factor activity
ABK01_06285	COG0785	Cytochrome C biogenesis protein
ABK01_06290	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABK01_06300	COG2373	Large extracellular alpha-helical protein
ABK01_06315	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABK01_06335	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABK01_06345	COG3142	Participates in the control of copper homeostasis
ABK01_06355	COG1373	ATPase (AAA superfamily
ABK01_06375	COG0456	acetyltransferase
ABK01_06385	COG1067	ATP-dependent peptidase activity
ABK01_06410	COG5433	transposase activity
ABK01_06415	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABK01_06420	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABK01_06425	COG0569	domain protein
ABK01_06435	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ABK01_06445	COG4166	transmembrane transport
ABK01_06450	COG1620	l-lactate permease
ABK01_06455	COG1309	transcriptional regulator
ABK01_06465	COG2388	GCN5-related N-acetyl-transferase
ABK01_06485	COG1070	Carbohydrate kinase
ABK01_06500	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ABK01_06505	COG2186	Transcriptional regulator
ABK01_06520	COG2604	Protein of unknown function DUF115
ABK01_06525	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABK01_06530	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ABK01_06545	COG2161	toxin-antitoxin pair type II binding
ABK01_06550	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABK01_06565	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
ABK01_06580	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABK01_06595	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ABK01_06600	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ABK01_06615	COG1522	sequence-specific DNA binding
ABK01_06620	COG0436	Aminotransferase
ABK01_06625	COG0561	phosphatase activity
ABK01_06635	COG4608	Belongs to the ABC transporter superfamily
ABK01_06650	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABK01_06670	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ABK01_06675	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ABK01_06690	COG1522	sequence-specific DNA binding
ABK01_06695	COG0436	Aminotransferase
ABK01_06700	COG0561	phosphatase activity
ABK01_06710	COG4608	Belongs to the ABC transporter superfamily
ABK01_06715	COG0601	transmembrane transport
ABK01_06720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABK01_06750	COG1876	peptidase activity
ABK01_06755	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK01_06765	COG1268	BioY protein
ABK01_06770	COG1122	ATPase activity
ABK01_06795	COG0552	protein localization to endoplasmic reticulum
ABK01_06805	COG4591	ABC-type transport system involved in lipoprotein release permease component
ABK01_06810	COG1136	(ABC) transporter
ABK01_06865	COG0330	HflC and HflK could
ABK01_06870	COG0330	HflC and HflK could
ABK01_06875	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABK01_06900	COG0187	DNA topoisomerase II activity
ABK01_06905	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
ABK01_06915	COG0455	bacterial-type flagellum organization
ABK01_06925	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ABK01_06935	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ABK01_06950	COG1131	(ABC) transporter
ABK01_06955	COG1725	Transcriptional regulator
ABK01_06975	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
ABK01_06980	COG1230	cation diffusion facilitator family transporter
ABK01_06995	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABK01_06995	COG0574	Belongs to the PEP-utilizing enzyme family
ABK01_07005	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ABK01_07005	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ABK01_07045	COG1921	L-seryl-tRNASec selenium transferase activity
ABK01_07080	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ABK01_07095	COG0333	Belongs to the bacterial ribosomal protein bL32 family
ABK01_07100	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABK01_07105	COG0571	ribonuclease III activity
ABK01_07110	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ABK01_07130	COG1414	Transcriptional regulator
ABK01_07135	COG1914	H( )-stimulated, divalent metal cation uptake system
ABK01_07155	COG2208	phosphoserine phosphatase activity
ABK01_07160	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABK01_07170	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ABK01_07175	COG1104	cysteine desulfurase activity
ABK01_07180	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ABK01_07190	COG1234	tRNA 3'-trailer cleavage
ABK01_07200	COG4254	PFAM FecR protein
ABK01_07210	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABK01_07215	COG0154	amidase activity
ABK01_07220	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABK01_07230	COG2211	Major facilitator Superfamily
ABK01_07255	COG0360	Binds together with S18 to 16S ribosomal RNA
ABK01_07260	COG0629	single-stranded DNA binding
ABK01_07265	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ABK01_07270	COG0359	binds to the 23S rRNA
ABK01_07275	COG0305	Participates in initiation and elongation during chromosome replication
ABK01_07290	COG0470	DNA polymerase III
ABK01_07300	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
ABK01_07305	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ABK01_07310	COG1739	Uncharacterized protein family UPF0029
ABK01_07315	COG0632	four-way junction helicase activity
ABK01_07320	COG1321	iron dependent repressor
ABK01_07325	COG0803	Belongs to the bacterial solute-binding protein 9 family
ABK01_07330	COG1121	(ABC) transporter
ABK01_07335	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABK01_07340	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABK01_07345	COG1683	Conserved Protein
ABK01_07355	COG3869	Catalyzes the specific phosphorylation of arginine residues in
ABK01_07365	COG3829	transcription factor binding
ABK01_07365	COG3290	protein histidine kinase activity
ABK01_07375	COG3852	Histidine kinase
ABK01_07380	COG2204	response regulator
ABK01_07385	COG0823	Involved in the tonB-independent uptake of proteins
ABK01_07405	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ABK01_07445	COG0149	triose-phosphate isomerase activity
ABK01_07450	COG1760	l-serine dehydratase
ABK01_07455	COG1760	l-serine dehydratase
ABK01_07485	COG1131	(ABC) transporter
ABK01_07510	COG1131	(ABC) transporter
ABK01_07520	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABK01_07525	COG0588	phosphoglycerate mutase activity
ABK01_07535	COG3330	Domain of unknown function (DUF4912)
ABK01_07545	COG2115	Belongs to the xylose isomerase family
ABK01_07550	COG1070	Carbohydrate kinase
ABK01_07555	COG1172	Belongs to the binding-protein-dependent transport system permease family
ABK01_07565	COG4213	ABC transporter substrate-binding protein
ABK01_07575	COG0666	response to abiotic stimulus
ABK01_07580	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ABK01_07620	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABK01_07640	COG0714	Associated with various cellular activities
ABK01_07645	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ABK01_07670	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABK01_07680	COG1309	transcriptional regulator
ABK01_07695	COG0750	zinc metalloprotease
ABK01_07710	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
ABK01_07715	COG0575	Belongs to the CDS family
ABK01_07720	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ABK01_07725	COG0233	cytoplasmic translational termination
ABK01_07730	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
ABK01_07735	COG0052	Belongs to the universal ribosomal protein uS2 family
ABK01_07740	COG0424	maF-like protein
ABK01_07745	COG0442	prolyl-tRNA aminoacylation
ABK01_07750	COG5341	Protein conserved in bacteria
ABK01_07760	COG0835	chemotaxis
ABK01_07765	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABK01_07770	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABK01_07775	COG0497	DNA recombination
ABK01_07800	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ABK01_07805	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ABK01_07815	COG1132	(ABC) transporter
ABK01_07820	COG1132	(ABC) transporter
ABK01_07830	COG1704	LemA family
ABK01_07845	COG3681	Belongs to the UPF0597 family
ABK01_07850	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ABK01_07855	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ABK01_07860	COG0772	Belongs to the SEDS family
ABK01_07865	COG0768	penicillin binding
ABK01_07880	COG1077	Cell shape determining protein MreB Mrl
ABK01_07900	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ABK01_07905	COG0358	DNA primase activity
ABK01_07910	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABK01_07950	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABK01_07955	COG2885	chlorophyll binding
ABK01_07970	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABK01_08005	COG3842	ATPase activity
ABK01_08015	COG4988	ABC transporter
ABK01_08020	COG1132	(ABC) transporter
ABK01_08025	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
ABK01_08045	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ABK01_08050	COG0205	6-phosphofructokinase activity
ABK01_08055	COG0285	dihydrofolate synthase activity
ABK01_08065	COG1413	lyase activity
ABK01_08070	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABK01_08075	COG0166	Belongs to the GPI family
ABK01_08080	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ABK01_08085	COG4115	mRNA cleavage
ABK01_08095	COG0741	lytic transglycosylase activity
ABK01_08095	COG1388	LysM domain
ABK01_08100	COG2885	chlorophyll binding
ABK01_08110	COG3876	Protein conserved in bacteria
ABK01_08115	COG1472	Belongs to the glycosyl hydrolase 3 family
ABK01_08125	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ABK01_08130	COG0534	Mate efflux family protein
ABK01_08135	COG0523	cobalamin synthesis protein
ABK01_08140	COG0101	tRNA pseudouridine synthase activity
ABK01_08150	COG0736	holo-[acyl-carrier-protein] synthase activity
ABK01_08160	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
ABK01_08165	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABK01_08175	COG3956	TIGRFAM MazG family protein
ABK01_08180	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ABK01_08190	COG1747	RNA polymerase binding
ABK01_08190	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABK01_08210	COG0708	Exodeoxyribonuclease III
ABK01_08220	COG2832	Protein of unknown function (DUF454)
ABK01_08225	COG1137	ATPase activity
ABK01_08245	COG0493	'glutamate synthase
ABK01_08245	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABK01_08250	COG0402	S-adenosylhomocysteine deaminase activity
ABK01_08295	COG1115	amino acid carrier protein
ABK01_08300	COG2066	Belongs to the glutaminase family
ABK01_08335	COG0457	Tetratricopeptide repeat
ABK01_08340	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABK01_08345	COG0733	neurotransmitter:sodium symporter activity
ABK01_08350	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ABK01_08350	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABK01_08350	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ABK01_08370	COG1293	RNA-binding protein homologous to eukaryotic snRNP
ABK01_08400	COG1509	lysine 2,3-aminomutase activity
ABK01_08405	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABK01_08420	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABK01_08430	COG1136	(ABC) transporter
ABK01_08455	COG0577	efflux transmembrane transporter activity
ABK01_08455	COG1136	(ABC) transporter
ABK01_08490	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABK01_08520	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ABK01_08525	COG1272	protein, Hemolysin III
ABK01_08530	COG0254	rRNA binding
ABK01_08535	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ABK01_08540	COG1058	Belongs to the CinA family
ABK01_08540	COG1546	Belongs to the CinA family
ABK01_08550	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ABK01_08555	COG0776	regulation of translation
ABK01_08560	COG0268	Binds directly to 16S ribosomal RNA
ABK01_08580	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABK01_08585	COG0151	Belongs to the GarS family
ABK01_08590	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
ABK01_08600	COG0731	radical SAM domain protein
ABK01_08615	COG2201	protein-glutamate methylesterase activity
ABK01_08625	COG0835	chemotaxis
ABK01_08630	COG0643	Histidine kinase
ABK01_08630	COG2198	Histidine kinase
ABK01_08640	COG3118	belongs to the thioredoxin family
ABK01_08650	COG0617	tRNA 3'-terminal CCA addition
ABK01_08655	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ABK01_08680	COG0563	adenylate kinase activity
ABK01_08685	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ABK01_08705	COG2357	RelA SpoT domain protein
ABK01_08720	COG2375	cellular response to nickel ion
ABK01_08720	COG1132	(ABC) transporter
ABK01_08725	COG1309	transcriptional regulator
ABK01_08735	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABK01_08740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABK01_08770	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
ABK01_08775	COG0482	sulfurtransferase activity
ABK01_08800	COG0504	CTP synthase activity
ABK01_08805	COG1196	nuclear chromosome segregation
ABK01_08815	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABK01_08820	COG0724	RNA recognition motif
ABK01_09035	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ABK01_09050	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
ABK01_09055	COG0142	geranyltranstransferase activity
ABK01_09060	COG3579	cysteine-type endopeptidase activity
ABK01_09065	COG0475	glutathione-regulated potassium exporter activity
ABK01_09075	COG0758	DNA mediated transformation
ABK01_09080	COG0551	DNA topoisomerase type I activity
ABK01_09080	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ABK01_09085	COG4974	Belongs to the 'phage' integrase family
ABK01_09110	COG2604	Protein of unknown function DUF115
ABK01_09130	COG0525	valine-tRNA ligase activity
ABK01_09150	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
ABK01_09150	COG3608	succinylglutamate desuccinylase aspartoacylase
ABK01_09160	COG1362	aminopeptidase activity
ABK01_09165	COG0557	exoribonuclease II activity
ABK01_09175	COG0534	Mate efflux family protein
ABK01_09185	COG1419	protein localization to endoplasmic reticulum
ABK01_09190	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABK01_09195	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABK01_09200	COG1684	flagellar biosynthetic protein fliR
ABK01_09205	COG1987	bacterial-type flagellum assembly
ABK01_09210	COG1338	Plays a role in the flagellum-specific transport system
ABK01_09220	COG1776	CheC inhibitor of MCP methylation
ABK01_09220	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABK01_09225	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABK01_09230	COG1580	Controls the rotational direction of flagella during chemotaxis
ABK01_09235	COG1360	Flagellar Motor Protein
ABK01_09240	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ABK01_09255	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ABK01_09265	COG1960	acyl-CoA dehydrogenase activity
ABK01_09285	COG0395	ABC-type sugar transport system, permease component
ABK01_09290	COG1175	transmembrane transport
ABK01_09300	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ABK01_09305	COG0328	RNA-DNA hybrid ribonuclease activity
ABK01_09310	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABK01_09315	COG0628	permease
ABK01_09320	COG0363	glucosamine-6-phosphate deaminase activity
ABK01_09325	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ABK01_09335	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABK01_09350	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
ABK01_09355	COG1480	7TM receptor with intracellular HD hydrolase
ABK01_09370	COG0494	nUDIX hydrolase
ABK01_09375	COG1652	LysM domain
ABK01_09385	COG0735	belongs to the Fur family
ABK01_09395	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
ABK01_09400	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
ABK01_09405	COG1924	4 iron, 4 sulfur cluster binding
ABK01_09410	COG0786	glutamate:sodium symporter activity
ABK01_09415	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABK01_09420	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABK01_09425	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABK01_09430	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
ABK01_09435	COG4770	biotin carboxylase activity
ABK01_09450	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABK01_09455	COG0840	transmembrane signaling receptor activity
ABK01_09490	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABK01_09495	COG0297	glycogen (starch) synthase activity
ABK01_09505	COG1598	PFAM Uncharacterised protein family UPF0150
ABK01_09510	COG1111	helicase
ABK01_09510	COG1205	dead DEAH box helicase
ABK01_09515	COG4115	mRNA cleavage
ABK01_09540	COG2337	Toxic component of a toxin-antitoxin (TA) module
ABK01_09575	COG0405	Gamma-glutamyltransferase
ABK01_09595	COG3608	succinylglutamate desuccinylase aspartoacylase
ABK01_09635	COG1846	Transcriptional regulator
ABK01_09655	COG1715	Restriction endonuclease
ABK01_09695	COG4585	Histidine kinase
ABK01_09710	COG0483	inositol monophosphate 1-phosphatase activity
ABK01_09715	COG3842	ATPase activity
ABK01_09740	COG0732	type I restriction modification DNA specificity domain
ABK01_09750	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ABK01_09765	COG0674	pyruvate-flavodoxin oxidoreductase activity
ABK01_09765	COG1013	pyruvate-flavodoxin oxidoreductase activity
ABK01_09765	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
ABK01_09765	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ABK01_09775	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABK01_09795	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABK01_09815	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
ABK01_09830	COG0124	histidyl-tRNA synthetase
ABK01_09840	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ABK01_09840	COG0116	Belongs to the methyltransferase superfamily
ABK01_09845	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
ABK01_09860	COG3116	cell division
ABK01_09860	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABK01_09865	COG0084	hydrolase, TatD family'
ABK01_09875	COG1464	Belongs to the NlpA lipoprotein family
ABK01_09890	COG1477	protein flavinylation
ABK01_09900	COG3588	fructose-bisphosphate aldolase
ABK01_09915	COG1979	alcohol dehydrogenase
ABK01_09930	COG1175	transmembrane transport
ABK01_09935	COG0395	ABC-type sugar transport system, permease component
ABK01_09970	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ABK01_09970	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABK01_09975	COG3118	belongs to the thioredoxin family
ABK01_09980	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
ABK01_09985	COG0457	Tetratricopeptide repeat
ABK01_10000	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABK01_10020	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ABK01_10025	COG0484	heat shock protein binding
ABK01_10030	COG0528	UMP kinase activity
ABK01_10035	COG1305	Transglutaminase-like
ABK01_10050	COG0215	cysteine-tRNA ligase activity
ABK01_10055	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ABK01_10060	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABK01_10075	COG2201	protein-glutamate methylesterase activity
ABK01_10110	COG5433	transposase activity
ABK01_10115	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK01_10140	COG1619	proteins homologs of microcin C7 resistance protein MccF
ABK01_10175	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ABK01_10185	COG0126	phosphoglycerate kinase activity
ABK01_10195	COG0813	purine-nucleoside phosphorylase activity
ABK01_10210	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
ABK01_10215	COG3639	organic phosphonate transmembrane transporter activity
ABK01_10235	COG1187	pseudouridine synthase activity
ABK01_10240	COG0840	transmembrane signaling receptor activity
ABK01_10260	COG1129	ABC transporter
ABK01_10265	COG1609	Transcriptional regulator
ABK01_10275	COG0546	phosphoglycolate phosphatase activity
ABK01_10305	COG1253	flavin adenine dinucleotide binding
ABK01_10320	COG0756	dUTP diphosphatase activity
ABK01_10325	COG1185	polyribonucleotide nucleotidyltransferase activity
ABK01_10335	COG0196	riboflavin kinase activity
ABK01_10345	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ABK01_10350	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
ABK01_10360	COG0779	Required for maturation of 30S ribosomal subunits
ABK01_10380	COG1713	HD superfamily hydrolase involved in NAD metabolism
ABK01_10380	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ABK01_10390	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ABK01_10395	COG0211	Belongs to the bacterial ribosomal protein bL27 family
ABK01_10405	COG0261	This protein binds to 23S rRNA in the presence of protein L20
ABK01_10410	COG1047	Peptidyl-prolyl cis-trans
ABK01_10425	COG0251	oxidation-reduction process
ABK01_10455	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
ABK01_10465	COG0556	nucleotide-excision repair
ABK01_10475	COG0556	nucleotide-excision repair
ABK01_10510	COG1091	dTDP-4-dehydrorhamnose reductase activity
ABK01_10580	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ABK01_10585	COG1083	cytidylyl-transferase
ABK01_10590	COG2089	acid synthase
ABK01_10605	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABK01_10620	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABK01_10625	COG1086	Polysaccharide biosynthesis protein
ABK01_10645	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ABK01_10655	COG2076	Multidrug Resistance protein
ABK01_10700	COG1373	ATPase (AAA superfamily
ABK01_10710	COG0028	Belongs to the TPP enzyme family
ABK01_10710	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
ABK01_10740	COG1362	aminopeptidase activity
ABK01_10745	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ABK01_10760	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
ABK01_10765	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABK01_10770	COG0017	Asparaginyl-tRNA synthetase
ABK01_10790	COG0701	Predicted permease
ABK01_10795	COG0116	Belongs to the methyltransferase superfamily
ABK01_10800	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ABK01_10805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABK01_10810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABK01_10825	COG0049	tRNA binding
ABK01_10840	COG0085	RNA polymerase activity
ABK01_10845	COG0222	ribosome binding
ABK01_10850	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ABK01_10855	COG0081	regulation of translation
ABK01_10860	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ABK01_10865	COG0250	Participates in transcription elongation, termination and antitermination
ABK01_10870	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ABK01_10880	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABK01_10895	COG1438	arginine binding
ABK01_10900	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ABK01_10915	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ABK01_10935	COG1254	Belongs to the acylphosphatase family
ABK01_10950	COG2217	Heavy metal translocating P-type atpase
ABK01_10970	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABK01_11005	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
ABK01_11010	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ABK01_11040	COG1129	ABC transporter
ABK01_11070	COG0616	signal peptide processing
ABK01_11075	COG4608	Belongs to the ABC transporter superfamily
ABK01_11080	COG0444	Belongs to the ABC transporter superfamily
ABK01_11085	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABK01_11090	COG0601	transmembrane transport
ABK01_11100	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ABK01_11105	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABK01_11110	COG1028	Short-chain dehydrogenase reductase Sdr
ABK01_11115	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ABK01_11125	COG1647	Serine aminopeptidase, S33
ABK01_11175	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ABK01_11180	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ABK01_11180	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ABK01_11190	COG0840	transmembrane signaling receptor activity
ABK01_11195	COG4443	Transcriptional Coactivator p15 (PC4)
ABK01_11200	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ABK01_11205	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABK01_11215	COG0840	transmembrane signaling receptor activity
ABK01_11225	COG1475	DNA binding
ABK01_11230	COG1192	Involved in chromosome partitioning
ABK01_11240	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ABK01_11290	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ABK01_11300	COG1309	transcriptional regulator
ABK01_11310	COG2375	cellular response to nickel ion
ABK01_11310	COG1132	(ABC) transporter
ABK01_11315	COG1132	(ABC) transporter
ABK01_11335	COG3842	ATPase activity
ABK01_11340	COG1840	ABC-type Fe3 transport system, periplasmic component
ABK01_11345	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
ABK01_11355	COG2211	Major facilitator Superfamily
ABK01_11365	COG1132	(ABC) transporter
ABK01_11370	COG1132	(ABC) transporter
ABK01_11385	COG1129	ABC transporter
ABK01_11390	COG1132	(ABC) transporter
ABK01_11395	COG1132	(ABC) transporter
ABK01_11400	COG1132	(ABC) transporter
ABK01_11410	COG1309	transcriptional regulator
ABK01_11425	COG3550	peptidyl-serine autophosphorylation
ABK01_11435	COG1162	GTPase activity
ABK01_11455	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ABK01_11465	COG0826	peptidase U32
ABK01_11485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABK01_11495	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ABK01_11500	COG0740	serine-type endopeptidase activity
ABK01_11505	COG0544	peptidyl-prolyl cis-trans isomerase activity
ABK01_11550	COG0709	Synthesizes selenophosphate from selenide and ATP
ABK01_11555	COG3951	Flagellar rod assembly protein muramidase FlgJ
ABK01_11565	COG4786	Flagellar basal body rod
ABK01_11610	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABK01_11620	COG1012	belongs to the aldehyde dehydrogenase family
ABK01_11625	COG1960	acyl-CoA dehydrogenase activity
ABK01_11695	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
ABK01_11715	COG1191	sigma factor activity
ABK01_11725	COG0840	transmembrane signaling receptor activity
ABK01_11735	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ABK01_11740	COG1722	exodeoxyribonuclease VII activity
ABK01_11745	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ABK01_11750	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ABK01_11760	COG0587	DNA-directed DNA polymerase activity
ABK01_11775	COG0217	transcriptional regulatory protein
ABK01_11790	COG0542	response to heat