locus-tag class description E4O00_00005 PF00308 Bacterial dnaA protein E4O00_00005 PF08299 Bacterial dnaA protein helix-turn-helix E4O00_00005 PF11638 DnaA N-terminal domain E4O00_00030 PF17239 Family of unknown function (DUF5312) E4O00_00045 PF02743 Cache domain E4O00_00045 PF00672 HAMP domain E4O00_00045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_00050 PF00005 ABC transporter E4O00_00050 PF00664 ABC transporter transmembrane region E4O00_00065 PF00005 ABC transporter E4O00_00065 PF00664 ABC transporter transmembrane region E4O00_00080 PF00561 alpha/beta hydrolase fold E4O00_00095 PF01032 FecCD transport family E4O00_00100 PF00005 ABC transporter E4O00_00105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase E4O00_00105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain E4O00_00115 PF01799 [2Fe-2S] binding domain E4O00_00115 PF00111 2Fe-2S iron-sulfur cluster binding domain E4O00_00130 PF02625 XdhC and CoxI family E4O00_00130 PF13478 XdhC Rossmann domain E4O00_00135 PF02028 BCCT, betaine/carnitine/choline family transporter E4O00_00140 PF00221 Aromatic amino acid lyase E4O00_00185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_00190 PF01476 LysM domain E4O00_00190 PF08525 Opacity-associated protein A N-terminal motif E4O00_00190 PF01551 Peptidase family M23 E4O00_00230 PF08463 EcoEI R protein C-terminal E4O00_00230 PF00271 Helicase conserved C-terminal domain E4O00_00230 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) E4O00_00230 PF04851 Type III restriction enzyme, res subunit E4O00_00235 PF12161 HsdM N-terminal domain E4O00_00235 PF02384 N-6 DNA Methylase E4O00_00245 PF01420 Type I restriction modification DNA specificity domain E4O00_00250 PF02899 Phage integrase, N-terminal SAM-like domain E4O00_00250 PF00589 Phage integrase family E4O00_00255 PF01420 Type I restriction modification DNA specificity domain E4O00_00260 PF01420 Type I restriction modification DNA specificity domain E4O00_00265 PF00892 EamA-like transporter family E4O00_00290 PF01207 Dihydrouridine synthase (Dus) E4O00_00295 PF01026 TatD related DNase E4O00_00310 PF00990 Diguanylate cyclase, GGDEF domain E4O00_00320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4O00_00320 PF14572 Phosphoribosyl synthetase-associated domain E4O00_00325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O00_00325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O00_00340 PF04452 RNA methyltransferase E4O00_00350 PF00571 CBS domain E4O00_00350 PF03448 MgtE intracellular N domain E4O00_00350 PF01769 Divalent cation transporter E4O00_00360 PF13419 Haloacid dehalogenase-like hydrolase E4O00_00365 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4O00_00365 PF00588 SpoU rRNA Methylase family E4O00_00385 PF03963 Flagellar hook capping protein - N-terminal region E4O00_00390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O00_00390 PF07559 Flagellar basal body protein FlaE E4O00_00390 PF00460 Flagella basal body rod protein E4O00_00400 PF01618 MotA/TolQ/ExbB proton channel family E4O00_00405 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4O00_00405 PF00691 OmpA family E4O00_00410 PF03748 Flagellar basal body-associated protein FliL E4O00_00415 PF02154 Flagellar motor switch protein FliM E4O00_00415 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4O00_00420 PF04509 CheC-like family E4O00_00420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4O00_00430 PF00813 FliP family E4O00_00465 PF03390 2-hydroxycarboxylate transporter family E4O00_00480 PF00005 ABC transporter E4O00_00485 PF01458 Uncharacterized protein family (UPF0051) E4O00_00495 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_00495 PF05362 Lon protease (S16) C-terminal proteolytic domain E4O00_00495 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4O00_00505 PF01361 Tautomerase enzyme E4O00_00540 PF01609 Transposase DDE domain E4O00_00540 PF13808 DDE_Tnp_1-associated E4O00_00555 PF00266 Aminotransferase class-V E4O00_00560 PF02355 Protein export membrane protein E4O00_00565 PF02355 Protein export membrane protein E4O00_00570 PF02699 Preprotein translocase subunit E4O00_00575 PF13808 DDE_Tnp_1-associated E4O00_00575 PF01609 Transposase DDE domain E4O00_00580 PF00436 Single-strand binding protein family E4O00_00585 PF00106 short chain dehydrogenase E4O00_00590 PF01259 SAICAR synthetase E4O00_00595 PF00731 AIR carboxylase E4O00_00605 PF01636 Phosphotransferase enzyme family E4O00_00615 PF08543 Phosphomethylpyrimidine kinase E4O00_00620 PF00005 ABC transporter E4O00_00640 PF01145 SPFH domain / Band 7 family E4O00_00645 PF01145 SPFH domain / Band 7 family E4O00_00660 PF05958 tRNA (Uracil-5-)-methyltransferase E4O00_00675 PF00027 Cyclic nucleotide-binding domain E4O00_00675 PF13545 Crp-like helix-turn-helix domain E4O00_00680 PF01252 Signal peptidase (SPase) II E4O00_00685 PF02424 ApbE family E4O00_00705 PF00919 Uncharacterized protein family UPF0004 E4O00_00705 PF04055 Radical SAM superfamily E4O00_00705 PF18693 TRAM domain E4O00_00720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_00720 PF00672 HAMP domain E4O00_00720 PF02743 Cache domain E4O00_00725 PF00672 HAMP domain E4O00_00725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_00725 PF02743 Cache domain E4O00_00730 PF17392 Urocanase C-terminal domain E4O00_00730 PF17391 Urocanase N-terminal domain E4O00_00730 PF01175 Urocanase Rossmann-like domain E4O00_00735 PF07670 Nucleoside recognition E4O00_00765 PF01624 MutS domain I E4O00_00765 PF05188 MutS domain II E4O00_00765 PF05190 MutS family domain IV E4O00_00765 PF00488 MutS domain V E4O00_00765 PF05192 MutS domain III E4O00_00785 PF02223 Thymidylate kinase E4O00_00795 PF00834 Ribulose-phosphate 3 epimerase family E4O00_00815 PF02954 Bacterial regulatory protein, Fis family E4O00_00815 PF13426 PAS domain E4O00_00815 PF00158 Sigma-54 interaction domain E4O00_00820 PF03880 DbpA RNA binding domain E4O00_00825 PF00581 Rhodanese-like domain E4O00_00825 PF12368 Rhodanase C-terminal E4O00_00825 PF17773 UPF0176 acylphosphatase like domain E4O00_00830 PF02127 Aminopeptidase I zinc metalloprotease (M18) E4O00_00865 PF00990 Diguanylate cyclase, GGDEF domain E4O00_00870 PF00990 Diguanylate cyclase, GGDEF domain E4O00_00895 PF00849 RNA pseudouridylate synthase E4O00_00905 PF01926 50S ribosome-binding GTPase E4O00_00915 PF01066 CDP-alcohol phosphatidyltransferase E4O00_00920 PF02229 Transcriptional Coactivator p15 (PC4) E4O00_00930 PF00075 RNase H E4O00_00940 PF02568 Thiamine biosynthesis protein (ThiI) E4O00_00940 PF02926 THUMP domain E4O00_00960 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E4O00_00970 PF00950 ABC 3 transport family E4O00_00995 PF00664 ABC transporter transmembrane region E4O00_00995 PF00005 ABC transporter E4O00_01000 PF09820 Predicted AAA-ATPase E4O00_01000 PF08011 PD-(D/E)XK nuclease superfamily E4O00_01005 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system E4O00_01025 PF02570 Precorrin-8X methylmutase E4O00_01030 PF01430 Hsp33 protein E4O00_01035 PF13932 GidA associated domain E4O00_01035 PF01134 Glucose inhibited division protein A E4O00_01040 PF02127 Aminopeptidase I zinc metalloprotease (M18) E4O00_01055 PF02508 Rnf-Nqr subunit, membrane protein E4O00_01060 PF04205 FMN-binding domain E4O00_01065 PF03116 NQR2, RnfD, RnfE family E4O00_01070 PF10531 SLBB domain E4O00_01070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4O00_01070 PF13237 4Fe-4S dicluster domain E4O00_01070 PF13375 RnfC Barrel sandwich hybrid domain E4O00_01075 PF00581 Rhodanese-like domain E4O00_01085 PF13519 von Willebrand factor type A domain E4O00_01110 PF16314 Domain of unknown function (DUF4954) E4O00_01125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_01125 PF00672 HAMP domain E4O00_01125 PF02743 Cache domain E4O00_01135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_01135 PF02743 Cache domain E4O00_01135 PF00672 HAMP domain E4O00_01140 PF17202 Single cache domain 3 E4O00_01140 PF00672 HAMP domain E4O00_01140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_01150 PF00572 Ribosomal protein L13 E4O00_01155 PF00380 Ribosomal protein S9/S16 E4O00_01165 PF00196 Bacterial regulatory proteins, luxR family E4O00_01165 PF00072 Response regulator receiver domain E4O00_01170 PF00596 Class II Aldolase and Adducin N-terminal domain E4O00_01190 PF01479 S4 domain E4O00_01190 PF00849 RNA pseudouridylate synthase E4O00_01195 PF00579 tRNA synthetases class I (W and Y) E4O00_01215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4O00_01215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4O00_01215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4O00_01215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4O00_01235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4O00_01235 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O00_01240 PF00154 recA bacterial DNA recombination protein E4O00_01245 PF02616 Segregation and condensation protein ScpA E4O00_01250 PF04079 Segregation and condensation complex subunit ScpB E4O00_01255 PF00849 RNA pseudouridylate synthase E4O00_01255 PF01479 S4 domain E4O00_01270 PF00005 ABC transporter E4O00_01270 PF09383 NIL domain E4O00_01275 PF02687 FtsX-like permease family E4O00_01275 PF12704 MacB-like periplasmic core domain E4O00_01275 PF00005 ABC transporter E4O00_01280 PF02277 Phosphoribosyltransferase E4O00_01290 PF00886 Ribosomal protein S16 E4O00_01300 PF01782 RimM N-terminal domain E4O00_01305 PF01746 tRNA (Guanine-1)-methyltransferase E4O00_01310 PF01245 Ribosomal protein L19 E4O00_01355 PF00005 ABC transporter E4O00_01360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4O00_01360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4O00_01365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) E4O00_01365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 E4O00_01370 PF01554 MatE E4O00_01380 PF00871 Acetokinase family E4O00_01385 PF00166 Chaperonin 10 Kd subunit E4O00_01390 PF03979 Sigma-70 factor, region 1.1 E4O00_01390 PF00140 Sigma-70 factor, region 1.2 E4O00_01390 PF04542 Sigma-70 region 2 E4O00_01390 PF04539 Sigma-70 region 3 E4O00_01390 PF04545 Sigma-70, region 4 E4O00_01395 PF02926 THUMP domain E4O00_01395 PF01170 Putative RNA methylase family UPF0020 E4O00_01400 PF01963 TraB family E4O00_01415 PF13193 AMP-binding enzyme C-terminal domain E4O00_01415 PF00501 AMP-binding enzyme E4O00_01440 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_01450 PF03144 Elongation factor Tu domain 2 E4O00_01450 PF00009 Elongation factor Tu GTP binding domain E4O00_01450 PF03764 Elongation factor G, domain IV E4O00_01450 PF14492 Elongation Factor G, domain II E4O00_01450 PF00679 Elongation factor G C-terminus E4O00_01455 PF03952 Enolase, N-terminal domain E4O00_01455 PF00113 Enolase, C-terminal TIM barrel domain E4O00_01510 PF02608 ABC transporter substrate-binding protein PnrA-like E4O00_01515 PF00005 ABC transporter E4O00_01520 PF02653 Branched-chain amino acid transport system / permease component E4O00_01525 PF02653 Branched-chain amino acid transport system / permease component E4O00_01530 PF04011 LemA family E4O00_01535 PF04536 TPM domain E4O00_01550 PF07009 NusG domain II E4O00_01555 PF03102 NeuB family E4O00_01555 PF08666 SAF domain E4O00_01570 PF11798 IMS family HHH motif E4O00_01570 PF11799 impB/mucB/samB family C-terminal domain E4O00_01570 PF00817 impB/mucB/samB family E4O00_01580 PF13277 YmdB-like protein E4O00_01595 PF01132 Elongation factor P (EF-P) OB domain E4O00_01595 PF08207 Elongation factor P (EF-P) KOW-like domain E4O00_01595 PF09285 Elongation factor P, C-terminal E4O00_01600 PF03485 Arginyl tRNA synthetase N terminal domain E4O00_01600 PF05746 DALR anticodon binding domain E4O00_01600 PF00750 tRNA synthetases class I (R) E4O00_01605 PF00156 Phosphoribosyl transferase domain E4O00_01610 PF04002 RadC-like JAB domain E4O00_01620 PF07943 Penicillin-binding protein 5, C-terminal domain E4O00_01620 PF00768 D-alanyl-D-alanine carboxypeptidase E4O00_01625 PF00152 tRNA synthetases class II (D, K and N) E4O00_01625 PF01336 OB-fold nucleic acid binding domain E4O00_01635 PF01180 Dihydroorotate dehydrogenase E4O00_01640 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_01645 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_01645 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_01650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_01655 PF00005 ABC transporter E4O00_01655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_01660 PF00005 ABC transporter E4O00_01660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_01665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_01670 PF00830 Ribosomal L28 family E4O00_01680 PF01812 5-formyltetrahydrofolate cyclo-ligase family E4O00_01695 PF01204 Trehalase E4O00_01700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4O00_01700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4O00_01705 PF01226 Formate/nitrite transporter E4O00_01710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4O00_01710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4O00_01715 PF00156 Phosphoribosyl transferase domain E4O00_01720 PF00669 Bacterial flagellin N-terminal helical region E4O00_01720 PF00700 Bacterial flagellin C-terminal helical region E4O00_01725 PF00460 Flagella basal body rod protein E4O00_01725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O00_01730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O00_01730 PF00460 Flagella basal body rod protein E4O00_01735 PF10135 Rod binding protein E4O00_01745 PF00580 UvrD/REP helicase N-terminal domain E4O00_01745 PF13361 UvrD-like helicase C-terminal domain E4O00_01785 PF02698 DUF218 domain E4O00_01790 PF03806 AbgT putative transporter family E4O00_01800 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O00_01800 PF00672 HAMP domain E4O00_01845 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) E4O00_01860 PF00196 Bacterial regulatory proteins, luxR family E4O00_01860 PF00072 Response regulator receiver domain E4O00_01865 PF00924 Mechanosensitive ion channel E4O00_01890 PF01551 Peptidase family M23 E4O00_01890 PF10145 Phage-related minor tail protein E4O00_01890 PF01464 Transglycosylase SLT domain E4O00_01935 PF03006 Haemolysin-III related E4O00_01940 PF08011 PD-(D/E)XK nuclease superfamily E4O00_01940 PF09820 Predicted AAA-ATPase E4O00_01960 PF01590 GAF domain E4O00_01960 PF00158 Sigma-54 interaction domain E4O00_01965 PF09015 NgoMIV restriction enzyme E4O00_01970 PF00145 C-5 cytosine-specific DNA methylase E4O00_01990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O00_01990 PF02403 Seryl-tRNA synthetase N-terminal domain E4O00_02005 PF02021 Uncharacterised protein family UPF0102 E4O00_02010 PF00072 Response regulator receiver domain E4O00_02020 PF00595 PDZ domain E4O00_02025 PF00795 Carbon-nitrogen hydrolase E4O00_02030 PF10509 Galactokinase galactose-binding signature E4O00_02030 PF08544 GHMP kinases C terminal E4O00_02045 PF00924 Mechanosensitive ion channel E4O00_02050 PF13419 Haloacid dehalogenase-like hydrolase E4O00_02060 PF02542 YgbB family E4O00_02065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4O00_02065 PF02542 YgbB family E4O00_02075 PF01609 Transposase DDE domain E4O00_02075 PF13808 DDE_Tnp_1-associated E4O00_02080 PF01609 Transposase DDE domain E4O00_02080 PF13808 DDE_Tnp_1-associated E4O00_02095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4O00_02095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O00_02100 PF03819 MazG nucleotide pyrophosphohydrolase domain E4O00_02105 PF09820 Predicted AAA-ATPase E4O00_02105 PF08011 PD-(D/E)XK nuclease superfamily E4O00_02120 PF13333 Integrase core domain E4O00_02120 PF13276 HTH-like domain E4O00_02120 PF00665 Integrase core domain E4O00_02165 PF00005 ABC transporter E4O00_02170 PF00005 ABC transporter E4O00_02170 PF02687 FtsX-like permease family E4O00_02170 PF12704 MacB-like periplasmic core domain E4O00_02175 PF00152 tRNA synthetases class II (D, K and N) E4O00_02190 PF08668 HDOD domain E4O00_02195 PF02146 Sir2 family E4O00_02205 PF01416 tRNA pseudouridine synthase E4O00_02210 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) E4O00_02220 PF01725 Ham1 family E4O00_02225 PF00664 ABC transporter transmembrane region E4O00_02225 PF00005 ABC transporter E4O00_02230 PF07859 alpha/beta hydrolase fold E4O00_02240 PF02872 5'-nucleotidase, C-terminal domain E4O00_02240 PF00149 Calcineurin-like phosphoesterase E4O00_02260 PF00860 Permease family E4O00_02270 PF00953 Glycosyl transferase family 4 E4O00_02275 PF00899 ThiF family E4O00_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_02280 PF01751 Toprim domain E4O00_02280 PF00204 DNA gyrase B E4O00_02280 PF00986 DNA gyrase B subunit, carboxyl terminus E4O00_02290 PF03932 CutC family E4O00_02300 PF06368 Methylaspartate mutase E chain (MutE) E4O00_02305 PF07476 Methylaspartate ammonia-lyase C-terminus E4O00_02305 PF05034 Methylaspartate ammonia-lyase N-terminus E4O00_02315 PF01032 FecCD transport family E4O00_02330 PF07687 Peptidase dimerisation domain E4O00_02330 PF01546 Peptidase family M20/M25/M40 E4O00_02345 PF01297 Zinc-uptake complex component A periplasmic E4O00_02365 PF03129 Anticodon binding domain E4O00_02365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O00_02365 PF04073 Aminoacyl-tRNA editing domain E4O00_02385 PF13407 Periplasmic binding protein domain E4O00_02385 PF18610 Periplasmic binding protein domain E4O00_02425 PF13333 Integrase core domain E4O00_02425 PF00665 Integrase core domain E4O00_02425 PF13276 HTH-like domain E4O00_02435 PF00005 ABC transporter E4O00_02440 PF02653 Branched-chain amino acid transport system / permease component E4O00_02445 PF13847 Methyltransferase domain E4O00_02475 PF03553 Na+/H+ antiporter family E4O00_02475 PF13726 Na+-H+ antiporter family E4O00_02480 PF03553 Na+/H+ antiporter family E4O00_02490 PF01053 Cys/Met metabolism PLP-dependent enzyme E4O00_02495 PF01177 Asp/Glu/Hydantoin racemase E4O00_02500 PF10371 Domain of unknown function E4O00_02500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4O00_02500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4O00_02500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4O00_02500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4O00_02510 PF00849 RNA pseudouridylate synthase E4O00_02510 PF01479 S4 domain E4O00_02535 PF00155 Aminotransferase class I and II E4O00_02545 PF14821 Threonine synthase N terminus E4O00_02545 PF00291 Pyridoxal-phosphate dependent enzyme E4O00_02550 PF02885 Glycosyl transferase family, helical bundle domain E4O00_02550 PF00591 Glycosyl transferase family, a/b domain E4O00_02550 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E4O00_02560 PF01551 Peptidase family M23 E4O00_02560 PF08525 Opacity-associated protein A N-terminal motif E4O00_02560 PF01476 LysM domain E4O00_02570 PF17762 HTH domain found in ParB protein E4O00_02570 PF02195 ParB-like nuclease domain E4O00_02575 PF00501 AMP-binding enzyme E4O00_02590 PF14353 CpXC protein E4O00_02605 PF10396 GTP-binding protein TrmE N-terminus E4O00_02605 PF01926 50S ribosome-binding GTPase E4O00_02605 PF12631 MnmE helical domain E4O00_02610 PF00654 Voltage gated chloride channel E4O00_02640 PF01022 Bacterial regulatory protein, arsR family E4O00_02645 PF03773 Predicted permease E4O00_02660 PF01758 Sodium Bile acid symporter family E4O00_02670 PF08241 Methyltransferase domain E4O00_02685 PF04298 Putative neutral zinc metallopeptidase E4O00_02690 PF01189 16S rRNA methyltransferase RsmB/F E4O00_02690 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E4O00_02690 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E4O00_02695 PF13302 Acetyltransferase (GNAT) domain E4O00_02700 PF08011 PD-(D/E)XK nuclease superfamily E4O00_02700 PF09820 Predicted AAA-ATPase E4O00_02710 PF00005 ABC transporter E4O00_02720 PF05198 Translation initiation factor IF-3, N-terminal domain E4O00_02720 PF00707 Translation initiation factor IF-3, C-terminal domain E4O00_02725 PF01632 Ribosomal protein L35 E4O00_02730 PF00453 Ribosomal protein L20 E4O00_02740 PF05164 Cell division protein ZapA E4O00_02745 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E4O00_02755 PF01476 LysM domain E4O00_02755 PF01464 Transglycosylase SLT domain E4O00_02775 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_02780 PF03313 Serine dehydratase alpha chain E4O00_02800 PF00326 Prolyl oligopeptidase family E4O00_02800 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4O00_02830 PF00005 ABC transporter E4O00_02835 PF01891 Cobalt uptake substrate-specific transmembrane region E4O00_02850 PF01850 PIN domain E4O00_02880 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E4O00_02885 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_02885 PF07724 AAA domain (Cdc48 subfamily) E4O00_02885 PF17871 AAA lid domain E4O00_02885 PF02861 Clp amino terminal domain, pathogenicity island component E4O00_02885 PF10431 C-terminal, D2-small domain, of ClpB protein E4O00_02890 PF02617 ATP-dependent Clp protease adaptor protein ClpS E4O00_02900 PF02677 Epoxyqueuosine reductase QueH E4O00_02905 PF09338 Glycine/sarcosine/betaine reductase component B subunits E4O00_02925 PF00005 ABC transporter E4O00_02930 PF00521 DNA gyrase/topoisomerase IV, subunit A E4O00_02935 PF03687 Uncharacterised protein family (UPF0164) E4O00_02950 PF00005 ABC transporter E4O00_02950 PF13732 Domain of unknown function (DUF4162) E4O00_02975 PF00271 Helicase conserved C-terminal domain E4O00_02975 PF00270 DEAD/DEAH box helicase E4O00_02985 PF01979 Amidohydrolase family E4O00_03010 PF07075 Protein of unknown function (DUF1343) E4O00_03015 PF00144 Beta-lactamase E4O00_03030 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4O00_03035 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4O00_03035 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4O00_03040 PF00448 SRP54-type protein, GTPase domain E4O00_03040 PF02881 SRP54-type protein, helical bundle domain E4O00_03040 PF02978 Signal peptide binding domain E4O00_03045 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4O00_03050 PF01176 Translation initiation factor 1A / IF-1 E4O00_03055 PF00684 DnaJ central domain E4O00_03055 PF00226 DnaJ domain E4O00_03055 PF01556 DnaJ C terminal domain E4O00_03060 PF00696 Amino acid kinase family E4O00_03065 PF00588 SpoU rRNA Methylase family E4O00_03080 PF00575 S1 RNA binding domain E4O00_03085 PF00072 Response regulator receiver domain E4O00_03085 PF00158 Sigma-54 interaction domain E4O00_03085 PF02954 Bacterial regulatory protein, Fis family E4O00_03105 PF00563 EAL domain E4O00_03105 PF00990 Diguanylate cyclase, GGDEF domain E4O00_03105 PF08447 PAS fold E4O00_03105 PF08448 PAS fold E4O00_03110 PF04055 Radical SAM superfamily E4O00_03135 PF01042 Endoribonuclease L-PSP E4O00_03140 PF08676 MutL C terminal dimerisation domain E4O00_03140 PF01119 DNA mismatch repair protein, C-terminal domain E4O00_03145 PF02609 Exonuclease VII small subunit E4O00_03165 PF04023 FeoA domain E4O00_03170 PF07670 Nucleoside recognition E4O00_03170 PF02421 Ferrous iron transport protein B E4O00_03170 PF04023 FeoA domain E4O00_03170 PF07664 Ferrous iron transport protein B C terminus E4O00_03170 PF17910 FeoB cytosolic helical domain E4O00_03215 PF00266 Aminotransferase class-V E4O00_03220 PF13808 DDE_Tnp_1-associated E4O00_03220 PF01609 Transposase DDE domain E4O00_03255 PF08346 AntA/AntB antirepressor E4O00_03255 PF10548 P22AR C-terminal domain E4O00_03295 PF00436 Single-strand binding protein family E4O00_03300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4O00_03305 PF02195 ParB-like nuclease domain E4O00_03305 PF17762 HTH domain found in ParB protein E4O00_03420 PF00574 Clp protease E4O00_03560 PF01609 Transposase DDE domain E4O00_03560 PF13808 DDE_Tnp_1-associated E4O00_03575 PF00472 RF-1 domain E4O00_03575 PF03462 PCRF domain E4O00_03590 PF00448 SRP54-type protein, GTPase domain E4O00_03590 PF02881 SRP54-type protein, helical bundle domain E4O00_03600 PF12704 MacB-like periplasmic core domain E4O00_03600 PF02687 FtsX-like permease family E4O00_03605 PF00005 ABC transporter E4O00_03615 PF02151 UvrB/uvrC motif E4O00_03620 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain E4O00_03625 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_03625 PF07724 AAA domain (Cdc48 subfamily) E4O00_03625 PF17871 AAA lid domain E4O00_03625 PF02861 Clp amino terminal domain, pathogenicity island component E4O00_03625 PF10431 C-terminal, D2-small domain, of ClpB protein E4O00_03630 PF00483 Nucleotidyl transferase E4O00_03640 PF03330 Lytic transglycolase E4O00_03650 PF01026 TatD related DNase E4O00_03655 PF00691 OmpA family E4O00_03770 PF13333 Integrase core domain E4O00_03770 PF13276 HTH-like domain E4O00_03770 PF00665 Integrase core domain E4O00_03835 PF13333 Integrase core domain E4O00_03835 PF00665 Integrase core domain E4O00_03835 PF13276 HTH-like domain E4O00_03855 PF01546 Peptidase family M20/M25/M40 E4O00_03855 PF07687 Peptidase dimerisation domain E4O00_03865 PF03606 C4-dicarboxylate anaerobic carrier E4O00_03905 PF01593 Flavin containing amine oxidoreductase E4O00_03920 PF00929 Exonuclease E4O00_03925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4O00_03925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4O00_03925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4O00_03925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4O00_03935 PF00962 Adenosine/AMP deaminase E4O00_03955 PF01867 CRISPR associated protein Cas1 E4O00_03960 PF09827 CRISPR associated protein Cas2 E4O00_03965 PF09827 CRISPR associated protein Cas2 E4O00_03995 PF13538 UvrD-like helicase C-terminal domain E4O00_04035 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_04035 PF07724 AAA domain (Cdc48 subfamily) E4O00_04035 PF17871 AAA lid domain E4O00_04035 PF02861 Clp amino terminal domain, pathogenicity island component E4O00_04035 PF10431 C-terminal, D2-small domain, of ClpB protein E4O00_04085 PF10415 Fumarase C C-terminus E4O00_04085 PF00206 Lyase E4O00_04090 PF13488 Glycine zipper E4O00_04090 PF00691 OmpA family E4O00_04120 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O00_04120 PF00672 HAMP domain E4O00_04165 PF03033 Glycosyltransferase family 28 N-terminal domain E4O00_04165 PF04101 Glycosyltransferase family 28 C-terminal domain E4O00_04185 PF09115 DNA polymerase III, delta subunit, C terminal E4O00_04190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_04190 PF00512 His Kinase A (phospho-acceptor) domain E4O00_04190 PF00989 PAS fold E4O00_04195 PF02954 Bacterial regulatory protein, Fis family E4O00_04195 PF00072 Response regulator receiver domain E4O00_04195 PF00158 Sigma-54 interaction domain E4O00_04200 PF01728 FtsJ-like methyltransferase E4O00_04210 PF13180 PDZ domain E4O00_04210 PF17820 PDZ domain E4O00_04215 PF00999 Sodium/hydrogen exchanger family E4O00_04220 PF02690 Na+/Pi-cotransporter E4O00_04225 PF03144 Elongation factor Tu domain 2 E4O00_04225 PF00009 Elongation factor Tu GTP binding domain E4O00_04225 PF09105 Elongation factor SelB, winged helix E4O00_04225 PF09107 Elongation factor SelB, winged helix E4O00_04225 PF09106 Elongation factor SelB, winged helix E4O00_04240 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system E4O00_04280 PF12706 Beta-lactamase superfamily domain E4O00_04280 PF00753 Metallo-beta-lactamase superfamily E4O00_04285 PF02608 ABC transporter substrate-binding protein PnrA-like E4O00_04295 PF02653 Branched-chain amino acid transport system / permease component E4O00_04300 PF02653 Branched-chain amino acid transport system / permease component E4O00_04330 PF00163 Ribosomal protein S4/S9 N-terminal domain E4O00_04330 PF01479 S4 domain E4O00_04350 PF08279 HTH domain E4O00_04350 PF13280 WYL domain E4O00_04360 PF00005 ABC transporter E4O00_04410 PF00005 ABC transporter E4O00_04415 PF02151 UvrB/uvrC motif E4O00_04415 PF04851 Type III restriction enzyme, res subunit E4O00_04415 PF17757 UvrB interaction domain E4O00_04415 PF00271 Helicase conserved C-terminal domain E4O00_04415 PF12344 Ultra-violet resistance protein B E4O00_04420 PF01256 Carbohydrate kinase E4O00_04420 PF03853 YjeF-related protein N-terminus E4O00_04425 PF00773 RNB domain E4O00_04465 PF01467 Cytidylyltransferase-like E4O00_04490 PF01991 ATP synthase (E/31 kDa) subunit E4O00_04495 PF01022 Bacterial regulatory protein, arsR family E4O00_04515 PF00849 RNA pseudouridylate synthase E4O00_04515 PF01479 S4 domain E4O00_04530 PF13375 RnfC Barrel sandwich hybrid domain E4O00_04530 PF10531 SLBB domain E4O00_04530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4O00_04530 PF13237 4Fe-4S dicluster domain E4O00_04535 PF03116 NQR2, RnfD, RnfE family E4O00_04565 PF10609 NUBPL iron-transfer P-loop NTPase E4O00_04575 PF01790 Prolipoprotein diacylglyceryl transferase E4O00_04580 PF02540 NAD synthase E4O00_04595 PF12848 ABC transporter E4O00_04595 PF00005 ABC transporter E4O00_04595 PF16326 ABC transporter C-terminal domain E4O00_04600 PF08239 Bacterial SH3 domain E4O00_04615 PF01966 HD domain E4O00_04655 PF00132 Bacterial transferase hexapeptide (six repeats) E4O00_04680 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4O00_04695 PF01063 Amino-transferase class IV E4O00_04705 PF02719 Polysaccharide biosynthesis protein E4O00_04735 PF02350 UDP-N-acetylglucosamine 2-epimerase E4O00_04760 PF00535 Glycosyl transferase family 2 E4O00_04770 PF00535 Glycosyl transferase family 2 E4O00_04775 PF01370 NAD dependent epimerase/dehydratase family E4O00_04785 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4O00_04785 PF00588 SpoU rRNA Methylase family E4O00_04790 PF10996 Beta-Casp domain E4O00_04790 PF00753 Metallo-beta-lactamase superfamily E4O00_04790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain E4O00_04810 PF01177 Asp/Glu/Hydantoin racemase E4O00_04815 PF16745 RsgA N-terminal domain E4O00_04815 PF03193 RsgA GTPase E4O00_04820 PF00488 MutS domain V E4O00_04820 PF01713 Smr domain E4O00_04835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4O00_04855 PF00486 Transcriptional regulatory protein, C terminal E4O00_04855 PF00072 Response regulator receiver domain E4O00_04860 PF00512 His Kinase A (phospho-acceptor) domain E4O00_04860 PF12833 Helix-turn-helix domain E4O00_04860 PF07495 Y_Y_Y domain E4O00_04860 PF00072 Response regulator receiver domain E4O00_04860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_04860 PF07494 Two component regulator propeller E4O00_04870 PF00005 ABC transporter E4O00_04890 PF01973 Protein of unknown function DUF115 E4O00_04920 PF01668 SmpB protein E4O00_04925 PF10502 Signal peptidase, peptidase S26 E4O00_04930 PF06969 HemN C-terminal domain E4O00_04930 PF04055 Radical SAM superfamily E4O00_04935 PF00672 HAMP domain E4O00_04935 PF01966 HD domain E4O00_04945 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4O00_04960 PF07195 Flagellar hook-associated protein 2 C-terminus E4O00_04960 PF02465 Flagellar hook-associated protein 2 N-terminus E4O00_04970 PF00700 Bacterial flagellin C-terminal helical region E4O00_04970 PF00669 Bacterial flagellin N-terminal helical region E4O00_04975 PF00700 Bacterial flagellin C-terminal helical region E4O00_04975 PF00669 Bacterial flagellin N-terminal helical region E4O00_05000 PF00557 Metallopeptidase family M24 E4O00_05000 PF01321 Creatinase/Prolidase N-terminal domain E4O00_05010 PF01709 Transcriptional regulator E4O00_05015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4O00_05015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4O00_05030 PF01609 Transposase DDE domain E4O00_05030 PF13808 DDE_Tnp_1-associated E4O00_05035 PF01584 CheW-like domain E4O00_05035 PF02895 Signal transducing histidine kinase, homodimeric domain E4O00_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_05035 PF01627 Hpt domain E4O00_05035 PF07194 P2 response regulator binding domain E4O00_05040 PF01584 CheW-like domain E4O00_05050 PF00072 Response regulator receiver domain E4O00_05060 PF06470 SMC proteins Flexible Hinge Domain E4O00_05060 PF02463 RecF/RecN/SMC N terminal domain E4O00_05070 PF13525 Outer membrane lipoprotein E4O00_05090 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_05110 PF13276 HTH-like domain E4O00_05110 PF00665 Integrase core domain E4O00_05125 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O00_05125 PF00072 Response regulator receiver domain E4O00_05130 PF10397 Adenylosuccinate lyase C-terminus E4O00_05130 PF00206 Lyase E4O00_05140 PF00391 PEP-utilising enzyme, mobile domain E4O00_05140 PF02896 PEP-utilising enzyme, TIM barrel domain E4O00_05140 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4O00_05155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O00_05155 PF07498 Rho termination factor, N-terminal domain E4O00_05155 PF07497 Rho termination factor, RNA-binding domain E4O00_05160 PF01197 Ribosomal protein L31 E4O00_05170 PF03313 Serine dehydratase alpha chain E4O00_05175 PF01842 ACT domain E4O00_05175 PF03315 Serine dehydratase beta chain E4O00_05185 PF05681 Fumarate hydratase (Fumerase) E4O00_05190 PF05683 Fumarase C-terminus E4O00_05190 PF05681 Fumarate hydratase (Fumerase) E4O00_05195 PF08218 Citrate lyase ligase C-terminal domain E4O00_05200 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E4O00_05200 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E4O00_05275 PF00348 Polyprenyl synthetase E4O00_05305 PF03692 Putative zinc- or iron-chelating domain E4O00_05320 PF02618 YceG-like family E4O00_05340 PF01351 Ribonuclease HII E4O00_05345 PF02575 YbaB/EbfC DNA-binding family E4O00_05350 PF13662 Toprim domain E4O00_05350 PF02132 RecR protein E4O00_05360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_05365 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_05370 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_05370 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_05375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_05375 PF00005 ABC transporter E4O00_05380 PF00005 ABC transporter E4O00_05380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_05385 PF03099 Biotin/lipoate A/B protein ligase family E4O00_05385 PF10437 Bacterial lipoate protein ligase C-terminus E4O00_05390 PF04055 Radical SAM superfamily E4O00_05395 PF04055 Radical SAM superfamily E4O00_05395 PF01938 TRAM domain E4O00_05395 PF00919 Uncharacterized protein family UPF0004 E4O00_05430 PF08323 Starch synthase catalytic domain E4O00_05430 PF00534 Glycosyl transferases group 1 E4O00_05450 PF00579 tRNA synthetases class I (W and Y) E4O00_05455 PF01584 CheW-like domain E4O00_05475 PF02906 Iron only hydrogenase large subunit, C-terminal domain E4O00_05475 PF02256 Iron hydrogenase small subunit E4O00_05475 PF00037 4Fe-4S binding domain E4O00_05475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4O00_05480 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O00_05480 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4O00_05485 PF01888 CbiD E4O00_05530 PF00881 Nitroreductase family E4O00_05535 PF00293 NUDIX domain E4O00_05565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4O00_05565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4O00_05595 PF02347 Glycine cleavage system P-protein E4O00_05600 PF01597 Glycine cleavage H-protein E4O00_05605 PF08669 Glycine cleavage T-protein C-terminal barrel domain E4O00_05605 PF01571 Aminomethyltransferase folate-binding domain E4O00_05615 PF18273 Type III R-M EcoP15I C-terminal domain E4O00_05615 PF01555 DNA methylase E4O00_05620 PF08774 VRR-NUC domain E4O00_05620 PF04851 Type III restriction enzyme, res subunit E4O00_05630 PF04223 Citrate lyase, alpha subunit (CitF) E4O00_05635 PF03328 HpcH/HpaI aldolase/citrate lyase family E4O00_05640 PF06857 Malonate decarboxylase delta subunit (MdcD) E4O00_05650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4O00_05650 PF00476 DNA polymerase family A E4O00_05650 PF01612 3'-5' exonuclease E4O00_05650 PF01367 5'-3' exonuclease, C-terminal SAM fold E4O00_05655 PF01121 Dephospho-CoA kinase E4O00_05665 PF08501 Shikimate dehydrogenase substrate binding domain E4O00_05665 PF01488 Shikimate / quinate 5-dehydrogenase E4O00_05665 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4O00_05670 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4O00_05680 PF03793 PASTA domain E4O00_05685 PF00551 Formyl transferase E4O00_05685 PF02911 Formyl transferase, C-terminal domain E4O00_05690 PF01327 Polypeptide deformylase E4O00_05705 PF02361 Cobalt transport protein E4O00_05710 PF00005 ABC transporter E4O00_05715 PF02632 BioY family E4O00_05740 PF00665 Integrase core domain E4O00_05740 PF13333 Integrase core domain E4O00_05760 PF01029 NusB family E4O00_05765 PF13145 PPIC-type PPIASE domain E4O00_05770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4O00_05770 PF01411 tRNA synthetases class II (A) E4O00_05800 PF01008 Initiation factor 2 subunit family E4O00_05810 PF00155 Aminotransferase class I and II E4O00_05830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O00_05830 PF05698 Bacterial trigger factor protein (TF) C-terminus E4O00_05830 PF05697 Bacterial trigger factor protein (TF) E4O00_05835 PF00574 Clp protease E4O00_05840 PF06689 ClpX C4-type zinc finger E4O00_05840 PF07724 AAA domain (Cdc48 subfamily) E4O00_05840 PF10431 C-terminal, D2-small domain, of ClpB protein E4O00_05850 PF01084 Ribosomal protein S18 E4O00_05855 PF00436 Single-strand binding protein family E4O00_05860 PF01250 Ribosomal protein S6 E4O00_05875 PF01813 ATP synthase subunit D E4O00_05880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O00_05880 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O00_05885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O00_05885 PF16886 ATPsynthase alpha/beta subunit N-term extension E4O00_05885 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O00_05890 PF00156 Phosphoribosyl transferase domain E4O00_05900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4O00_05915 PF00005 ABC transporter E4O00_05935 PF07171 MlrC C-terminus E4O00_05935 PF07364 Metallopeptidase family M81 E4O00_05940 PF00300 Histidine phosphatase superfamily (branch 1) E4O00_05960 PF02464 Competence-damaged protein E4O00_05960 PF18146 Damage-inducible protein CinA KH domain E4O00_05960 PF00994 Probable molybdopterin binding domain E4O00_05970 PF00795 Carbon-nitrogen hydrolase E4O00_05980 PF01649 Ribosomal protein S20 E4O00_05990 PF04620 Flagellar filament outer layer protein Flaa E4O00_06000 PF01520 N-acetylmuramoyl-L-alanine amidase E4O00_06005 PF00162 Phosphoglycerate kinase E4O00_06015 PF00958 GMP synthase C terminal domain E4O00_06015 PF00117 Glutamine amidotransferase class-I E4O00_06015 PF01171 PP-loop family E4O00_06025 PF12627 Probable RNA and SrmB- binding site of polymerase A E4O00_06025 PF12626 Polymerase A arginine-rich C-terminus E4O00_06025 PF01743 Poly A polymerase head domain E4O00_06045 PF00684 DnaJ central domain E4O00_06045 PF01556 DnaJ C terminal domain E4O00_06045 PF00226 DnaJ domain E4O00_06050 PF00557 Metallopeptidase family M24 E4O00_06055 PF03372 Endonuclease/Exonuclease/phosphatase family E4O00_06065 PF00037 4Fe-4S binding domain E4O00_06075 PF01551 Peptidase family M23 E4O00_06075 PF04225 Opacity-associated protein A LysM-like domain E4O00_06095 PF00501 AMP-binding enzyme E4O00_06110 PF02417 Chromate transporter E4O00_06115 PF02417 Chromate transporter E4O00_06130 PF01467 Cytidylyltransferase-like E4O00_06135 PF01018 GTP1/OBG E4O00_06135 PF01926 50S ribosome-binding GTPase E4O00_06140 PF01016 Ribosomal L27 protein E4O00_06150 PF00829 Ribosomal prokaryotic L21 protein E4O00_06155 PF16363 GDP-mannose 4,6 dehydratase E4O00_06160 PF06397 Desulfoferrodoxin, N-terminal domain E4O00_06160 PF01880 Desulfoferrodoxin E4O00_06175 PF01381 Helix-turn-helix E4O00_06265 PF13333 Integrase core domain E4O00_06265 PF00665 Integrase core domain E4O00_06265 PF13276 HTH-like domain E4O00_06285 PF13808 DDE_Tnp_1-associated E4O00_06285 PF01609 Transposase DDE domain E4O00_06375 PF01209 ubiE/COQ5 methyltransferase family E4O00_06405 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) E4O00_06595 PF00005 ABC transporter E4O00_06615 PF13726 Na+-H+ antiporter family E4O00_06615 PF03553 Na+/H+ antiporter family E4O00_06650 PF01330 RuvA N terminal domain E4O00_06655 PF02075 Crossover junction endodeoxyribonuclease RuvC E4O00_06660 PF00675 Insulinase (Peptidase family M16) E4O00_06660 PF05193 Peptidase M16 inactive domain E4O00_06660 PF08367 Peptidase M16C associated E4O00_06685 PF13180 PDZ domain E4O00_06685 PF03572 Peptidase family S41 E4O00_06695 PF00005 ABC transporter E4O00_06695 PF12848 ABC transporter E4O00_06715 PF00232 Glycosyl hydrolase family 1 E4O00_06730 PF00919 Uncharacterized protein family UPF0004 E4O00_06730 PF04055 Radical SAM superfamily E4O00_06745 PF05525 Branched-chain amino acid transport protein E4O00_06750 PF00679 Elongation factor G C-terminus E4O00_06750 PF14492 Elongation Factor G, domain II E4O00_06750 PF00009 Elongation factor Tu GTP binding domain E4O00_06750 PF03144 Elongation factor Tu domain 2 E4O00_06750 PF06421 GTP-binding protein LepA C-terminus E4O00_06755 PF04060 Putative Fe-S cluster E4O00_06760 PF01926 50S ribosome-binding GTPase E4O00_06760 PF07650 KH domain E4O00_06765 PF02142 MGS-like domain E4O00_06765 PF01808 AICARFT/IMPCHase bienzyme E4O00_06770 PF00551 Formyl transferase E4O00_06775 PF02810 SEC-C motif E4O00_06775 PF07517 SecA DEAD-like domain E4O00_06775 PF01043 SecA preprotein cross-linking domain E4O00_06775 PF07516 SecA Wing and Scaffold domain E4O00_06780 PF00392 Bacterial regulatory proteins, gntR family E4O00_06800 PF01648 4'-phosphopantetheinyl transferase superfamily E4O00_06810 PF02457 DisA bacterial checkpoint controller nucleotide-binding E4O00_06815 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4O00_06815 PF02779 Transketolase, pyrimidine binding domain E4O00_06815 PF02780 Transketolase, C-terminal domain E4O00_06820 PF02629 CoA binding domain E4O00_06820 PF06971 Putative DNA-binding protein N-terminus E4O00_06825 PF10672 S-adenosylmethionine-dependent methyltransferase E4O00_06835 PF00465 Iron-containing alcohol dehydrogenase E4O00_06840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O00_06840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O00_06855 PF13186 Iron-sulfur cluster-binding domain E4O00_06870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O00_06885 PF03484 tRNA synthetase B5 domain E4O00_06885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4O00_06900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4O00_06910 PF00860 Permease family E4O00_06920 PF01263 Aldose 1-epimerase E4O00_06935 PF02899 Phage integrase, N-terminal SAM-like domain E4O00_06935 PF00589 Phage integrase family E4O00_06945 PF01098 Cell cycle protein E4O00_06950 PF03717 Penicillin-binding Protein dimerisation domain E4O00_06950 PF00905 Penicillin binding protein transpeptidase domain E4O00_06985 PF00140 Sigma-70 factor, region 1.2 E4O00_06985 PF04542 Sigma-70 region 2 E4O00_06985 PF04539 Sigma-70 region 3 E4O00_06985 PF04545 Sigma-70, region 4 E4O00_06985 PF03979 Sigma-70 factor, region 1.1 E4O00_06990 PF08275 DNA primase catalytic core, N-terminal domain E4O00_06990 PF01807 CHC2 zinc finger E4O00_07010 PF17820 PDZ domain E4O00_07010 PF13180 PDZ domain E4O00_07020 PF01171 PP-loop family E4O00_07025 PF14693 Ribosomal protein TL5, C-terminal domain E4O00_07025 PF01386 Ribosomal L25p family E4O00_07035 PF04026 SpoVG E4O00_07040 PF08544 GHMP kinases C terminal E4O00_07040 PF00288 GHMP kinases N terminal domain E4O00_07050 PF03062 MBOAT, membrane-bound O-acyltransferase family E4O00_07060 PF01145 SPFH domain / Band 7 family E4O00_07065 PF01145 SPFH domain / Band 7 family E4O00_07075 PF03477 ATP cone domain E4O00_07100 PF01205 Uncharacterized protein family UPF0029 E4O00_07100 PF09186 Domain of unknown function (DUF1949) E4O00_07105 PF03772 Competence protein E4O00_07105 PF13567 Domain of unknown function (DUF4131) E4O00_07105 PF00753 Metallo-beta-lactamase superfamily E4O00_07130 PF00905 Penicillin binding protein transpeptidase domain E4O00_07130 PF03717 Penicillin-binding Protein dimerisation domain E4O00_07140 PF00456 Transketolase, thiamine diphosphate binding domain E4O00_07140 PF02779 Transketolase, pyrimidine binding domain E4O00_07165 PF02463 RecF/RecN/SMC N terminal domain E4O00_07185 PF00877 NlpC/P60 family E4O00_07185 PF01476 LysM domain E4O00_07195 PF02603 HPr Serine kinase N terminus E4O00_07195 PF07475 HPr Serine kinase C-terminal domain E4O00_07205 PF01523 Putative modulator of DNA gyrase E4O00_07235 PF02559 CarD-like/TRCF domain E4O00_07235 PF00270 DEAD/DEAH box helicase E4O00_07235 PF00271 Helicase conserved C-terminal domain E4O00_07235 PF03461 TRCF domain E4O00_07235 PF17757 UvrB interaction domain E4O00_07250 PF02743 Cache domain E4O00_07250 PF00672 HAMP domain E4O00_07250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_07275 PF05762 VWA domain containing CoxE-like protein E4O00_07280 PF12592 Protein of unknown function (DUF3763) E4O00_07280 PF17868 AAA lid domain E4O00_07280 PF07728 AAA domain (dynein-related subfamily) E4O00_07295 PF01734 Patatin-like phospholipase E4O00_07315 PF04260 Protein of unknown function (DUF436) E4O00_07320 PF09820 Predicted AAA-ATPase E4O00_07320 PF08011 PD-(D/E)XK nuclease superfamily E4O00_07335 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_07335 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_07350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_07350 PF00005 ABC transporter E4O00_07365 PF17726 Dam-replacing HTH domain E4O00_07365 PF06044 Dam-replacing family E4O00_07380 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E4O00_07380 PF02843 Phosphoribosylglycinamide synthetase, C domain E4O00_07380 PF02844 Phosphoribosylglycinamide synthetase, N domain E4O00_07385 PF00586 AIR synthase related protein, N-terminal domain E4O00_07385 PF02769 AIR synthase related protein, C-terminal domain E4O00_07390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_07390 PF00672 HAMP domain E4O00_07395 PF04551 GcpE protein E4O00_07410 PF02028 BCCT, betaine/carnitine/choline family transporter E4O00_07415 PF12804 MobA-like NTP transferase domain E4O00_07420 PF01235 Sodium:alanine symporter family E4O00_07440 PF00488 MutS domain V E4O00_07440 PF01713 Smr domain E4O00_07460 PF00092 von Willebrand factor type A domain E4O00_07470 PF01882 Protein of unknown function DUF58 E4O00_07485 PF00571 CBS domain E4O00_07485 PF03471 Transporter associated domain E4O00_07490 PF02130 Uncharacterized protein family UPF0054 E4O00_07500 PF02562 PhoH-like protein E4O00_07515 PF00121 Triosephosphate isomerase E4O00_07525 PF04101 Glycosyltransferase family 28 C-terminal domain E4O00_07525 PF03033 Glycosyltransferase family 28 N-terminal domain E4O00_07540 PF00753 Metallo-beta-lactamase superfamily E4O00_07555 PF10282 Lactonase, 7-bladed beta-propeller E4O00_07560 PF01297 Zinc-uptake complex component A periplasmic E4O00_07565 PF00005 ABC transporter E4O00_07570 PF00950 ABC 3 transport family E4O00_07575 PF00950 ABC 3 transport family E4O00_07600 PF18269 T3SS EscN ATPase C-terminal domain E4O00_07600 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O00_07600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O00_07605 PF02108 Flagellar assembly protein FliH E4O00_07610 PF14842 FliG N-terminal domain E4O00_07610 PF14841 FliG middle domain E4O00_07610 PF01706 FliG C-terminal domain E4O00_07615 PF08345 Flagellar M-ring protein C-terminal E4O00_07615 PF01514 Secretory protein of YscJ/FliF family E4O00_07620 PF02049 Flagellar hook-basal body complex protein FliE E4O00_07625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O00_07625 PF00460 Flagella basal body rod protein E4O00_07630 PF00460 Flagella basal body rod protein E4O00_07640 PF00227 Proteasome subunit E4O00_07645 PF02899 Phage integrase, N-terminal SAM-like domain E4O00_07645 PF00589 Phage integrase family E4O00_07655 PF02481 DNA recombination-mediator protein A E4O00_07655 PF17782 DprA winged helix domain E4O00_07665 PF02899 Phage integrase, N-terminal SAM-like domain E4O00_07665 PF00589 Phage integrase family E4O00_07670 PF00091 Tubulin/FtsZ family, GTPase domain E4O00_07670 PF12327 FtsZ family, C-terminal domain E4O00_07675 PF02491 SHS2 domain inserted in FTSA E4O00_07705 PF02381 MraZ protein, putative antitoxin-like E4O00_07745 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E4O00_07745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4O00_07745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4O00_07755 PF02233 NAD(P) transhydrogenase beta subunit E4O00_07770 PF00118 TCP-1/cpn60 chaperonin family E4O00_07785 PF01264 Chorismate synthase E4O00_07790 PF02390 Putative methyltransferase E4O00_07830 PF01740 STAS domain E4O00_07850 PF01212 Beta-eliminating lyase E4O00_07860 PF05191 Adenylate kinase, active site lid E4O00_07875 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4O00_07875 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4O00_07880 PF02576 RimP N-terminal domain E4O00_07880 PF17384 RimP C-terminal SH3 domain E4O00_07885 PF00575 S1 RNA binding domain E4O00_07885 PF13184 NusA-like KH domain E4O00_07885 PF08529 NusA N-terminal domain E4O00_07890 PF00009 Elongation factor Tu GTP binding domain E4O00_07890 PF11987 Translation-initiation factor 2 E4O00_07890 PF04760 Translation initiation factor IF-2, N-terminal region E4O00_07895 PF02033 Ribosome-binding factor A E4O00_07900 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4O00_07960 PF06803 Protein of unknown function (DUF1232) E4O00_07975 PF08011 PD-(D/E)XK nuclease superfamily E4O00_07975 PF09820 Predicted AAA-ATPase E4O00_07990 PF01168 Alanine racemase, N-terminal domain E4O00_07990 PF00842 Alanine racemase, C-terminal domain E4O00_08000 PF16258 Domain of unknown function (DUF4912) E4O00_08015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4O00_08015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O00_08015 PF03129 Anticodon binding domain E4O00_08035 PF03755 YicC-like family, N-terminal region E4O00_08035 PF08340 Domain of unknown function (DUF1732) E4O00_08040 PF02875 Mur ligase family, glutamate ligase domain E4O00_08040 PF01225 Mur ligase family, catalytic domain E4O00_08040 PF08245 Mur ligase middle domain E4O00_08045 PF08245 Mur ligase middle domain E4O00_08045 PF02875 Mur ligase family, glutamate ligase domain E4O00_08050 PF00849 RNA pseudouridylate synthase E4O00_08050 PF01479 S4 domain E4O00_08070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4O00_08100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_08105 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_08110 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_08110 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_08115 PF00005 ABC transporter E4O00_08115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_08120 PF00005 ABC transporter E4O00_08120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_08130 PF09334 tRNA synthetases class I (M) E4O00_08130 PF01588 Putative tRNA binding domain E4O00_08140 PF01609 Transposase DDE domain E4O00_08140 PF13808 DDE_Tnp_1-associated E4O00_08150 PF00005 ABC transporter E4O00_08175 PF00005 ABC transporter E4O00_08175 PF00664 ABC transporter transmembrane region E4O00_08180 PF00664 ABC transporter transmembrane region E4O00_08180 PF00005 ABC transporter E4O00_08190 PF03553 Na+/H+ antiporter family E4O00_08195 PF00155 Aminotransferase class I and II E4O00_08205 PF02954 Bacterial regulatory protein, Fis family E4O00_08205 PF13426 PAS domain E4O00_08205 PF00158 Sigma-54 interaction domain E4O00_08215 PF00301 Rubredoxin E4O00_08230 PF00009 Elongation factor Tu GTP binding domain E4O00_08230 PF00679 Elongation factor G C-terminus E4O00_08230 PF14492 Elongation Factor G, domain II E4O00_08230 PF03764 Elongation factor G, domain IV E4O00_08230 PF03144 Elongation factor Tu domain 2 E4O00_08235 PF00177 Ribosomal protein S7p/S5e E4O00_08240 PF00164 Ribosomal protein S12/S23 E4O00_08245 PF11756 Nitrous oxide-stimulated promoter E4O00_08250 PF04304 Protein of unknown function (DUF454) E4O00_08265 PF00692 dUTPase E4O00_08275 PF00312 Ribosomal protein S15 E4O00_08280 PF01687 Riboflavin kinase E4O00_08280 PF06574 FAD synthetase E4O00_08285 PF02719 Polysaccharide biosynthesis protein E4O00_08290 PF08011 PD-(D/E)XK nuclease superfamily E4O00_08290 PF09820 Predicted AAA-ATPase E4O00_08295 PF01544 CorA-like Mg2+ transporter protein E4O00_08300 PF13735 tRNA nucleotidyltransferase domain 2 putative E4O00_08300 PF12627 Probable RNA and SrmB- binding site of polymerase A E4O00_08300 PF01743 Poly A polymerase head domain E4O00_08310 PF00011 Hsp20/alpha crystallin family E4O00_08315 PF14622 Ribonuclease-III-like E4O00_08315 PF00035 Double-stranded RNA binding motif E4O00_08320 PF00550 Phosphopantetheine attachment site E4O00_08325 PF01783 Ribosomal L32p protein family E4O00_08330 PF13941 MutL protein E4O00_08335 PF02310 B12 binding domain E4O00_08345 PF16811 TRAP transporter T-component E4O00_08355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E4O00_08355 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E4O00_08365 PF02601 Exonuclease VII, large subunit E4O00_08365 PF13742 OB-fold nucleic acid binding domain E4O00_08385 PF16921 Tex protein YqgF-like domain E4O00_08385 PF17674 HHH domain E4O00_08385 PF00575 S1 RNA binding domain E4O00_08385 PF09371 Tex-like protein N-terminal domain E4O00_08395 PF17760 UvrA interaction domain E4O00_08395 PF17755 UvrA DNA-binding domain E4O00_08395 PF00005 ABC transporter E4O00_08400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_08400 PF00672 HAMP domain E4O00_08400 PF02743 Cache domain E4O00_08405 PF13603 Leucyl-tRNA synthetase, Domain 2 E4O00_08405 PF09334 tRNA synthetases class I (M) E4O00_08405 PF00133 tRNA synthetases class I (I, L, M and V) E4O00_08405 PF08264 Anticodon-binding domain of tRNA E4O00_08410 PF04205 FMN-binding domain E4O00_08410 PF00890 FAD binding domain E4O00_08415 PF02163 Peptidase family M50 E4O00_08415 PF17820 PDZ domain E4O00_08420 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4O00_08420 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4O00_08420 PF13288 DXP reductoisomerase C-terminal domain E4O00_08430 PF01255 Putative undecaprenyl diphosphate synthase E4O00_08435 PF01765 Ribosome recycling factor E4O00_08440 PF00889 Elongation factor TS E4O00_08450 PF02545 Maf-like protein E4O00_08470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O00_08470 PF07196 Flagellin hook IN motif E4O00_08475 PF07196 Flagellin hook IN motif E4O00_08475 PF00669 Bacterial flagellin N-terminal helical region E4O00_08475 PF00700 Bacterial flagellin C-terminal helical region E4O00_08480 PF02623 FliW protein E4O00_08485 PF02599 Global regulator protein family E4O00_08505 PF04073 Aminoacyl-tRNA editing domain E4O00_08525 PF08534 Redoxin E4O00_08530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O00_08535 PF05175 Methyltransferase small domain E4O00_08550 PF00005 ABC transporter E4O00_08565 PF07730 Histidine kinase E4O00_08575 PF02654 Cobalamin-5-phosphate synthase E4O00_08585 PF07478 D-ala D-ala ligase C-terminus E4O00_08585 PF01820 D-ala D-ala ligase N-terminus E4O00_08625 PF00574 Clp protease E4O00_08630 PF03186 CobD/Cbib protein E4O00_08640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4O00_08650 PF14804 Jag N-terminus E4O00_08650 PF01424 R3H domain E4O00_08655 PF02096 60Kd inner membrane protein E4O00_08655 PF14849 YidC periplasmic domain E4O00_08660 PF01809 Putative membrane protein insertion efficiency factor E4O00_08665 PF00825 Ribonuclease P E4O00_08670 PF00468 Ribosomal protein L34 E4O00_08690 PF00753 Metallo-beta-lactamase superfamily E4O00_08725 PF13537 Glutamine amidotransferase domain E4O00_08725 PF00156 Phosphoribosyl transferase domain E4O00_08735 PF08011 PD-(D/E)XK nuclease superfamily E4O00_08735 PF09820 Predicted AAA-ATPase E4O00_08750 PF00155 Aminotransferase class I and II E4O00_08765 PF00343 Carbohydrate phosphorylase E4O00_08785 PF04998 RNA polymerase Rpb1, domain 5 E4O00_08785 PF05000 RNA polymerase Rpb1, domain 4 E4O00_08785 PF04997 RNA polymerase Rpb1, domain 1 E4O00_08785 PF04983 RNA polymerase Rpb1, domain 3 E4O00_08785 PF00623 RNA polymerase Rpb1, domain 2 E4O00_08790 PF04560 RNA polymerase Rpb2, domain 7 E4O00_08790 PF04563 RNA polymerase beta subunit E4O00_08790 PF04561 RNA polymerase Rpb2, domain 2 E4O00_08790 PF04565 RNA polymerase Rpb2, domain 3 E4O00_08790 PF10385 RNA polymerase beta subunit external 1 domain E4O00_08790 PF00562 RNA polymerase Rpb2, domain 6 E4O00_08795 PF16320 Ribosomal protein L7/L12 dimerisation domain E4O00_08795 PF00542 Ribosomal protein L7/L12 C-terminal domain E4O00_08805 PF00687 Ribosomal protein L1p/L10e family E4O00_08810 PF00298 Ribosomal protein L11, RNA binding domain E4O00_08810 PF03946 Ribosomal protein L11, N-terminal domain E4O00_08815 PF00467 KOW motif E4O00_08815 PF02357 Transcription termination factor nusG E4O00_08820 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4O00_08830 PF00471 Ribosomal protein L33 E4O00_08855 PF00005 ABC transporter E4O00_08855 PF03412 Peptidase C39 family E4O00_08855 PF00664 ABC transporter transmembrane region E4O00_08895 PF07885 Ion channel E4O00_08895 PF02254 TrkA-N domain E4O00_08900 PF05343 M42 glutamyl aminopeptidase E4O00_08905 PF00390 Malic enzyme, N-terminal domain E4O00_08905 PF03949 Malic enzyme, NAD binding domain E4O00_08910 PF01202 Shikimate kinase E4O00_08920 PF08011 PD-(D/E)XK nuclease superfamily E4O00_08920 PF09820 Predicted AAA-ATPase E4O00_08925 PF01871 AMMECR1 E4O00_08925 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E4O00_08930 PF12796 Ankyrin repeats (3 copies) E4O00_08935 PF02547 Queuosine biosynthesis protein E4O00_08950 PF00005 ABC transporter E4O00_08960 PF00005 ABC transporter E4O00_08995 PF01638 HxlR-like helix-turn-helix E4O00_09025 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O00_09025 PF00440 Bacterial regulatory proteins, tetR family E4O00_09045 PF17922 Tetracyclin repressor-like, C-terminal domain E4O00_09045 PF00440 Bacterial regulatory proteins, tetR family E4O00_09050 PF00664 ABC transporter transmembrane region E4O00_09050 PF00005 ABC transporter E4O00_09050 PF08021 Siderophore-interacting FAD-binding domain E4O00_09050 PF04954 Siderophore-interacting protein E4O00_09060 PF00266 Aminotransferase class-V E4O00_09080 PF01206 Sulfurtransferase TusA E4O00_09095 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4O00_09095 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4O00_09095 PF02772 S-adenosylmethionine synthetase, central domain E4O00_09105 PF01165 Ribosomal protein S21 E4O00_09115 PF00696 Amino acid kinase family E4O00_09130 PF13276 HTH-like domain E4O00_09130 PF00665 Integrase core domain E4O00_09130 PF13333 Integrase core domain E4O00_09140 PF12390 Selenocysteine synthase N terminal E4O00_09140 PF03841 L-seryl-tRNA selenium transferase E4O00_09145 PF01541 GIY-YIG catalytic domain E4O00_09145 PF02151 UvrB/uvrC motif E4O00_09145 PF08459 UvrC Helix-hairpin-helix N-terminal E4O00_09165 PF02743 Cache domain E4O00_09165 PF00672 HAMP domain E4O00_09165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_09170 PF05175 Methyltransferase small domain E4O00_09170 PF17827 PrmC N-terminal domain E4O00_09180 PF09820 Predicted AAA-ATPase E4O00_09180 PF08011 PD-(D/E)XK nuclease superfamily E4O00_09205 PF00270 DEAD/DEAH box helicase E4O00_09205 PF00271 Helicase conserved C-terminal domain E4O00_09205 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4O00_09205 PF18074 Primosomal protein N C-terminal domain E4O00_09205 PF17764 3′ DNA-binding domain (3′BD) E4O00_09210 PF03167 Uracil DNA glycosylase superfamily E4O00_09220 PF00672 HAMP domain E4O00_09220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_09220 PF16591 Helical bimodular sensor domain E4O00_09230 PF08241 Methyltransferase domain E4O00_09240 PF00486 Transcriptional regulatory protein, C terminal E4O00_09240 PF00072 Response regulator receiver domain E4O00_09250 PF13808 DDE_Tnp_1-associated E4O00_09250 PF01609 Transposase DDE domain E4O00_09265 PF00814 Glycoprotease family E4O00_09295 PF01555 DNA methylase E4O00_09300 PF04851 Type III restriction enzyme, res subunit E4O00_09310 PF00171 Aldehyde dehydrogenase family E4O00_09325 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_09335 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_09355 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E4O00_09370 PF18073 Rubredoxin metal binding domain E4O00_09370 PF06745 KaiC E4O00_09380 PF00664 ABC transporter transmembrane region E4O00_09380 PF00005 ABC transporter E4O00_09385 PF00005 ABC transporter E4O00_09390 PF01973 Protein of unknown function DUF115 E4O00_09420 PF08011 PD-(D/E)XK nuclease superfamily E4O00_09420 PF09820 Predicted AAA-ATPase E4O00_09425 PF04055 Radical SAM superfamily E4O00_09450 PF00730 HhH-GPD superfamily base excision DNA repair protein E4O00_09455 PF00391 PEP-utilising enzyme, mobile domain E4O00_09455 PF00224 Pyruvate kinase, barrel domain E4O00_09455 PF02887 Pyruvate kinase, alpha/beta domain E4O00_09490 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) E4O00_09490 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 E4O00_09505 PF01921 tRNA synthetases class I (K) E4O00_09510 PF08245 Mur ligase middle domain E4O00_09510 PF01225 Mur ligase family, catalytic domain E4O00_09510 PF02875 Mur ligase family, glutamate ligase domain E4O00_09520 PF07977 FabA-like domain E4O00_09525 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O00_09525 PF00440 Bacterial regulatory proteins, tetR family E4O00_09540 PF00005 ABC transporter E4O00_09545 PF00664 ABC transporter transmembrane region E4O00_09545 PF00005 ABC transporter E4O00_09555 PF04954 Siderophore-interacting protein E4O00_09555 PF00664 ABC transporter transmembrane region E4O00_09555 PF00005 ABC transporter E4O00_09555 PF08021 Siderophore-interacting FAD-binding domain E4O00_09560 PF00005 ABC transporter E4O00_09560 PF00664 ABC transporter transmembrane region E4O00_09565 PF00005 ABC transporter E4O00_09565 PF00664 ABC transporter transmembrane region E4O00_09575 PF01638 HxlR-like helix-turn-helix E4O00_09580 PF01613 Flavin reductase like domain E4O00_09590 PF02678 Pirin E4O00_09590 PF05726 Pirin C-terminal cupin domain E4O00_09615 PF00664 ABC transporter transmembrane region E4O00_09615 PF00005 ABC transporter E4O00_09615 PF03412 Peptidase C39 family E4O00_09635 PF17202 Single cache domain 3 E4O00_09635 PF00672 HAMP domain E4O00_09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_09670 PF11855 Protein of unknown function (DUF3375) E4O00_09675 PF01022 Bacterial regulatory protein, arsR family E4O00_09690 PF13732 Domain of unknown function (DUF4162) E4O00_09690 PF00005 ABC transporter E4O00_09730 PF13808 DDE_Tnp_1-associated E4O00_09730 PF01609 Transposase DDE domain E4O00_09835 PF01139 tRNA-splicing ligase RtcB E4O00_09840 PF13396 Phospholipase_D-nuclease N-terminal E4O00_09840 PF13091 PLD-like domain E4O00_09860 PF13460 NAD(P)H-binding E4O00_09865 PF02082 Transcriptional regulator E4O00_09870 PF00583 Acetyltransferase (GNAT) family E4O00_09885 PF03009 Glycerophosphoryl diester phosphodiesterase family E4O00_09895 PF00708 Acylphosphatase E4O00_09915 PF01196 Ribosomal protein L17 E4O00_09920 PF01000 RNA polymerase Rpb3/RpoA insert domain E4O00_09920 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4O00_09920 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4O00_09925 PF00411 Ribosomal protein S11 E4O00_09930 PF00416 Ribosomal protein S13/S18 E4O00_09935 PF00444 Ribosomal protein L36 E4O00_09945 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4O00_09950 PF00327 Ribosomal protein L30p/L7e E4O00_09955 PF03719 Ribosomal protein S5, C-terminal domain E4O00_09955 PF00333 Ribosomal protein S5, N-terminal domain E4O00_09960 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4O00_09965 PF00347 Ribosomal protein L6 E4O00_09970 PF00410 Ribosomal protein S8 E4O00_09975 PF00253 Ribosomal protein S14p/S29e E4O00_09980 PF00281 Ribosomal protein L5 E4O00_09980 PF00673 ribosomal L5P family C-terminus E4O00_09985 PF00467 KOW motif E4O00_09985 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4O00_09990 PF00238 Ribosomal protein L14p/L23e E4O00_09995 PF00366 Ribosomal protein S17 E4O00_10000 PF00831 Ribosomal L29 protein E4O00_10005 PF00252 Ribosomal protein L16p/L10e E4O00_10010 PF07650 KH domain E4O00_10010 PF00189 Ribosomal protein S3, C-terminal domain E4O00_10015 PF00237 Ribosomal protein L22p/L17e E4O00_10020 PF00203 Ribosomal protein S19 E4O00_10025 PF00181 Ribosomal Proteins L2, RNA binding domain E4O00_10025 PF03947 Ribosomal Proteins L2, C-terminal domain E4O00_10030 PF00276 Ribosomal protein L23 E4O00_10035 PF00573 Ribosomal protein L4/L1 family E4O00_10040 PF00297 Ribosomal protein L3 E4O00_10070 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4O00_10100 PF00085 Thioredoxin E4O00_10135 PF03450 CO dehydrogenase flavoprotein C-terminal domain E4O00_10135 PF00941 FAD binding domain in molybdopterin dehydrogenase E4O00_10140 PF01799 [2Fe-2S] binding domain E4O00_10140 PF00111 2Fe-2S iron-sulfur cluster binding domain E4O00_10150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4O00_10160 PF02719 Polysaccharide biosynthesis protein E4O00_10180 PF01641 SelR domain E4O00_10180 PF01625 Peptide methionine sulfoxide reductase E4O00_10200 PF08439 Oligopeptidase F E4O00_10200 PF01432 Peptidase family M3 E4O00_10210 PF12728 Helix-turn-helix domain E4O00_10210 PF02661 Fic/DOC family E4O00_10220 PF01266 FAD dependent oxidoreductase E4O00_10220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E4O00_10225 PF04324 BFD-like [2Fe-2S] binding domain E4O00_10225 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O00_10235 PF00571 CBS domain E4O00_10235 PF00005 ABC transporter E4O00_10240 PF06616 BsuBI/PstI restriction endonuclease domain E4O00_10240 PF17728 BsuBI/PstI restriction endonuclease HTH domain E4O00_10245 PF10437 Bacterial lipoate protein ligase C-terminus E4O00_10245 PF03099 Biotin/lipoate A/B protein ligase family E4O00_10255 PF00005 ABC transporter E4O00_10260 PF00155 Aminotransferase class I and II E4O00_10260 PF00392 Bacterial regulatory proteins, gntR family E4O00_10265 PF06180 Cobalt chelatase (CbiK) E4O00_10270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O00_10275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4O00_10275 PF07685 CobB/CobQ-like glutamine amidotransferase domain E4O00_10280 PF11849 Domain of unknown function (DUF3369) E4O00_10300 PF08264 Anticodon-binding domain of tRNA E4O00_10300 PF00133 tRNA synthetases class I (I, L, M and V) E4O00_10310 PF01609 Transposase DDE domain E4O00_10310 PF13808 DDE_Tnp_1-associated E4O00_10315 PF00571 CBS domain E4O00_10315 PF00478 IMP dehydrogenase / GMP reductase domain E4O00_10330 PF00464 Serine hydroxymethyltransferase E4O00_10335 PF01066 CDP-alcohol phosphatidyltransferase E4O00_10365 PF00291 Pyridoxal-phosphate dependent enzyme E4O00_10395 PF04545 Sigma-70, region 4 E4O00_10395 PF04539 Sigma-70 region 3 E4O00_10395 PF04542 Sigma-70 region 2 E4O00_10405 PF10609 NUBPL iron-transfer P-loop NTPase E4O00_10425 PF00117 Glutamine amidotransferase class-I E4O00_10425 PF06418 CTP synthase N-terminus E4O00_10450 PF10371 Domain of unknown function E4O00_10450 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4O00_10450 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4O00_10450 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4O00_10450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4O00_10455 PF00691 OmpA family E4O00_10470 PF13280 WYL domain E4O00_10470 PF08279 HTH domain E4O00_10495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_10500 PF00486 Transcriptional regulatory protein, C terminal E4O00_10500 PF00072 Response regulator receiver domain E4O00_10505 PF03030 Inorganic H+ pyrophosphatase E4O00_10525 PF00072 Response regulator receiver domain E4O00_10525 PF01339 CheB methylesterase E4O00_10530 PF01739 CheR methyltransferase, SAM binding domain E4O00_10530 PF03705 CheR methyltransferase, all-alpha domain E4O00_10545 PF00005 ABC transporter E4O00_10545 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4O00_10550 PF01195 Peptidyl-tRNA hydrolase E4O00_10560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4O00_10565 PF00672 HAMP domain E4O00_10565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_10570 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_10575 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_10575 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_10580 PF00005 ABC transporter E4O00_10580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_10585 PF00005 ABC transporter E4O00_10585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_10590 PF01545 Cation efflux family E4O00_10590 PF16916 Dimerisation domain of Zinc Transporter E4O00_10620 PF00012 Hsp70 protein E4O00_10625 PF01025 GrpE E4O00_10630 PF12728 Helix-turn-helix domain E4O00_10630 PF02661 Fic/DOC family E4O00_10640 PF00005 ABC transporter E4O00_10650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O00_10650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4O00_10665 PF01554 MatE E4O00_10680 PF13276 HTH-like domain E4O00_10680 PF00665 Integrase core domain E4O00_10680 PF13333 Integrase core domain E4O00_10715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O00_10740 PF13614 AAA domain E4O00_10745 PF02195 ParB-like nuclease domain E4O00_10745 PF17762 HTH domain found in ParB protein E4O00_10760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4O00_10760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4O00_10765 PF00698 Acyl transferase domain E4O00_10780 PF07055 Enoyl reductase FAD binding domain E4O00_10780 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4O00_10780 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4O00_10790 PF00270 DEAD/DEAH box helicase E4O00_10790 PF13749 Putative ATP-dependent DNA helicase recG C-terminal E4O00_10790 PF17191 RecG wedge domain E4O00_10800 PF00364 Biotin-requiring enzyme E4O00_10805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4O00_10805 PF02785 Biotin carboxylase C-terminal domain E4O00_10805 PF00289 Biotin carboxylase, N-terminal domain E4O00_10810 PF01039 Carboxyl transferase domain E4O00_10815 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4O00_10840 PF09820 Predicted AAA-ATPase E4O00_10840 PF08011 PD-(D/E)XK nuclease superfamily E4O00_10850 PF03773 Predicted permease E4O00_10860 PF17863 AAA lid domain E4O00_10860 PF07726 ATPase family associated with various cellular activities (AAA) E4O00_10900 PF01425 Amidase E4O00_10905 PF02637 GatB domain E4O00_10905 PF02934 GatB/GatE catalytic domain E4O00_10930 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E4O00_10950 PF02743 Cache domain E4O00_10950 PF00672 HAMP domain E4O00_10950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_10965 PF03063 Prismane/CO dehydrogenase family E4O00_10980 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4O00_10985 PF00005 ABC transporter E4O00_10985 PF02687 FtsX-like permease family E4O00_10985 PF12704 MacB-like periplasmic core domain E4O00_11000 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_11030 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_11030 PF17862 AAA+ lid domain E4O00_11030 PF01434 Peptidase family M41 E4O00_11055 PF01048 Phosphorylase superfamily E4O00_11065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_11065 PF00672 HAMP domain E4O00_11065 PF02743 Cache domain E4O00_11070 PF12671 Putative amidase domain E4O00_11080 PF01680 SOR/SNZ family E4O00_11090 PF01171 PP-loop family E4O00_11110 PF13361 UvrD-like helicase C-terminal domain E4O00_11110 PF12705 PD-(D/E)XK nuclease superfamily E4O00_11110 PF00580 UvrD/REP helicase N-terminal domain E4O00_11120 PF02254 TrkA-N domain E4O00_11120 PF02080 TrkA-C domain E4O00_11125 PF02386 Cation transport protein E4O00_11145 PF01406 tRNA synthetases class I (C) catalytic domain E4O00_11145 PF09190 DALR domain E4O00_11150 PF01565 FAD binding domain E4O00_11150 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4O00_11165 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O00_11165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4O00_11170 PF12728 Helix-turn-helix domain E4O00_11170 PF02661 Fic/DOC family E4O00_11180 PF07676 WD40-like Beta Propeller Repeat E4O00_11180 PF00326 Prolyl oligopeptidase family E4O00_11195 PF13276 HTH-like domain E4O00_11195 PF00665 Integrase core domain E4O00_11195 PF13333 Integrase core domain E4O00_11215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4O00_11215 PF00128 Alpha amylase, catalytic domain E4O00_11230 PF01761 3-dehydroquinate synthase E4O00_11235 PF01048 Phosphorylase superfamily E4O00_11260 PF00005 ABC transporter E4O00_11265 PF12683 Protein of unknown function (DUF3798) E4O00_11275 PF00128 Alpha amylase, catalytic domain E4O00_11285 PF01409 tRNA synthetases class II core domain (F) E4O00_11290 PF04225 Opacity-associated protein A LysM-like domain E4O00_11290 PF01551 Peptidase family M23 E4O00_11300 PF03885 Protein of unknown function (DUF327) E4O00_11305 PF04468 PSP1 C-terminal conserved region E4O00_11320 PF03824 High-affinity nickel-transport protein E4O00_11365 PF00072 Response regulator receiver domain E4O00_11365 PF00990 Diguanylate cyclase, GGDEF domain E4O00_11380 PF00990 Diguanylate cyclase, GGDEF domain E4O00_11380 PF08448 PAS fold E4O00_11380 PF00563 EAL domain E4O00_11385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4O00_11385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4O00_11385 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E4O00_11385 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E4O00_11390 PF00375 Sodium:dicarboxylate symporter family E4O00_11400 PF07729 FCD domain E4O00_11400 PF00392 Bacterial regulatory proteins, gntR family E4O00_11405 PF01266 FAD dependent oxidoreductase E4O00_11410 PF04324 BFD-like [2Fe-2S] binding domain E4O00_11410 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O00_11420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O00_11420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O00_11490 PF01547 Bacterial extracellular solute-binding protein E4O00_11495 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_11500 PF08402 TOBE domain E4O00_11500 PF00005 ABC transporter E4O00_11515 PF01546 Peptidase family M20/M25/M40 E4O00_11515 PF07687 Peptidase dimerisation domain E4O00_11525 PF00072 Response regulator receiver domain E4O00_11525 PF00196 Bacterial regulatory proteins, luxR family E4O00_11570 PF01081 KDPG and KHG aldolase E4O00_11585 PF00258 Flavodoxin E4O00_11605 PF00005 ABC transporter E4O00_11615 PF12729 Four helix bundle sensory module for signal transduction E4O00_11615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_11615 PF00672 HAMP domain E4O00_11625 PF13476 AAA domain E4O00_11645 PF02673 Bacitracin resistance protein BacA E4O00_11650 PF17854 FtsK alpha domain E4O00_11650 PF09397 Ftsk gamma domain E4O00_11650 PF01580 FtsK/SpoIIIE family E4O00_11655 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4O00_11655 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain E4O00_11655 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E4O00_11660 PF00672 HAMP domain E4O00_11660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O00_11660 PF02743 Cache domain E4O00_11680 PF13808 DDE_Tnp_1-associated E4O00_11680 PF01609 Transposase DDE domain E4O00_11695 PF01470 Pyroglutamyl peptidase E4O00_11715 PF02595 Glycerate kinase family E4O00_11720 PF03600 Citrate transporter E4O00_11725 PF12557 Cob(I)alamin adenosyltransferase N terminal E4O00_11725 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP E4O00_11750 PF07238 PilZ domain E4O00_11795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4O00_11795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4O00_11805 PF00753 Metallo-beta-lactamase superfamily E4O00_11885 PF02463 RecF/RecN/SMC N terminal domain E4O00_11890 PF02767 DNA polymerase III beta subunit, central domain E4O00_11890 PF02768 DNA polymerase III beta subunit, C-terminal domain E4O00_11890 PF00712 DNA polymerase III beta subunit, N-terminal domain E4O00_11895 PF01661 Macro domain E4O00_11910 PF00085 Thioredoxin E4O00_11915 PF00085 Thioredoxin E4O00_11920 PF02504 Fatty acid synthesis protein E4O00_11935 PF01212 Beta-eliminating lyase E4O00_11940 PF03601 Conserved hypothetical protein 698 E4O00_11945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E4O00_11950 PF01594 AI-2E family transporter E4O00_11955 PF00268 Ribonucleotide reductase, small chain E4O00_11980 PF01554 MatE E4O00_11985 PF17922 Tetracyclin repressor-like, C-terminal domain E4O00_11985 PF00440 Bacterial regulatory proteins, tetR family E4O00_12010 PF00270 DEAD/DEAH box helicase E4O00_12010 PF00271 Helicase conserved C-terminal domain E4O00_12010 PF00570 HRDC domain E4O00_12010 PF16124 RecQ zinc-binding E4O00_12010 PF09382 RQC domain E4O00_12025 PF01595 Cyclin M transmembrane N-terminal domain E4O00_12025 PF00571 CBS domain E4O00_12025 PF03471 Transporter associated domain E4O00_12030 PF03471 Transporter associated domain E4O00_12030 PF00571 CBS domain E4O00_12030 PF01595 Cyclin M transmembrane N-terminal domain E4O00_12035 PF07726 ATPase family associated with various cellular activities (AAA) E4O00_12035 PF17863 AAA lid domain E4O00_12055 PF02511 Thymidylate synthase complementing protein E4O00_12080 PF00005 ABC transporter E4O00_12100 PF02310 B12 binding domain E4O00_12100 PF02607 B12 binding domain E4O00_12120 PF01208 Uroporphyrinogen decarboxylase (URO-D) E4O00_12125 PF01343 Peptidase family S49 E4O00_12130 PF01926 50S ribosome-binding GTPase E4O00_12130 PF06071 Protein of unknown function (DUF933) E4O00_12140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4O00_12150 PF12161 HsdM N-terminal domain E4O00_12150 PF02384 N-6 DNA Methylase E4O00_12155 PF00990 Diguanylate cyclase, GGDEF domain E4O00_12170 PF02971 Formiminotransferase domain E4O00_12170 PF07837 Formiminotransferase domain, N-terminal subdomain E4O00_12175 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component E4O00_12185 PF01869 BadF/BadG/BcrA/BcrD ATPase family E4O00_12195 PF13416 Bacterial extracellular solute-binding protein E4O00_12200 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_12205 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_12225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O00_12230 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_12235 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_12235 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O00_12240 PF00005 ABC transporter E4O00_12240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_12245 PF00005 ABC transporter E4O00_12245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O00_12260 PF00528 Binding-protein-dependent transport system inner membrane component E4O00_12265 PF00005 ABC transporter E4O00_12265 PF08402 TOBE domain E4O00_12270 PF00534 Glycosyl transferases group 1 E4O00_12270 PF13439 Glycosyltransferase Family 4 E4O00_12305 PF03781 Sulfatase-modifying factor enzyme 1 E4O00_12325 PF06803 Protein of unknown function (DUF1232) E4O00_12340 PF13538 UvrD-like helicase C-terminal domain E4O00_12355 PF03616 Sodium/glutamate symporter E4O00_12360 PF03477 ATP cone domain E4O00_12360 PF00317 Ribonucleotide reductase, all-alpha domain E4O00_12360 PF02867 Ribonucleotide reductase, barrel domain E4O00_12365 PF00274 Fructose-bisphosphate aldolase class-I E4O00_12370 PF01850 PIN domain E4O00_12375 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin E4O00_12385 PF03764 Elongation factor G, domain IV E4O00_12385 PF00009 Elongation factor Tu GTP binding domain E4O00_12385 PF00679 Elongation factor G C-terminus E4O00_12385 PF14492 Elongation Factor G, domain II E4O00_12385 PF03144 Elongation factor Tu domain 2 E4O00_12395 PF00486 Transcriptional regulatory protein, C terminal E4O00_12395 PF00072 Response regulator receiver domain E4O00_12405 PF00005 ABC transporter E4O00_12425 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E4O00_12435 PF02080 TrkA-C domain E4O00_12435 PF02254 TrkA-N domain E4O00_12440 PF03989 DNA gyrase C-terminal domain, beta-propeller E4O00_12440 PF00521 DNA gyrase/topoisomerase IV, subunit A E4O00_12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4O00_12445 PF03466 LysR substrate binding domain E4O00_12450 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O00_12460 PF08011 PD-(D/E)XK nuclease superfamily E4O00_12460 PF09820 Predicted AAA-ATPase E4O00_12470 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B E4O00_12470 PF00970 Oxidoreductase FAD-binding domain E4O00_12470 PF00175 Oxidoreductase NAD-binding domain E4O00_12480 PF01435 Peptidase family M48 E4O00_12535 PF02915 Rubrerythrin E4O00_12540 PF16124 RecQ zinc-binding E4O00_12540 PF09382 RQC domain E4O00_12540 PF00570 HRDC domain E4O00_12540 PF00271 Helicase conserved C-terminal domain E4O00_12540 PF00270 DEAD/DEAH box helicase E4O00_12545 PF11967 Recombination protein O N terminal E4O00_12545 PF02565 Recombination protein O C terminal E4O00_12555 PF01702 Queuine tRNA-ribosyltransferase E4O00_12570 PF07722 Peptidase C26 E4O00_12585 PF01791 DeoC/LacD family aldolase E4O00_12595 PF01546 Peptidase family M20/M25/M40 E4O00_12595 PF07687 Peptidase dimerisation domain E4O00_12605 PF02896 PEP-utilising enzyme, TIM barrel domain E4O00_12605 PF00391 PEP-utilising enzyme, mobile domain E4O00_12605 PF05524 PEP-utilising enzyme, N-terminal E4O00_12610 PF01926 50S ribosome-binding GTPase E4O00_12610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4O00_12630 PF01136 Peptidase family U32 E4O00_12630 PF12392 Collagenase E4O00_12635 PF04542 Sigma-70 region 2 E4O00_12635 PF00140 Sigma-70 factor, region 1.2 E4O00_12635 PF03979 Sigma-70 factor, region 1.1 E4O00_12635 PF04539 Sigma-70 region 3 E4O00_12635 PF04545 Sigma-70, region 4 E4O00_12650 PF13545 Crp-like helix-turn-helix domain E4O00_12650 PF00027 Cyclic nucleotide-binding domain E4O00_12665 PF00365 Phosphofructokinase E4O00_12760 PF13276 HTH-like domain E4O00_12760 PF13333 Integrase core domain E4O00_12760 PF00665 Integrase core domain E4O00_12765 PF13276 HTH-like domain E4O00_12765 PF00665 Integrase core domain E4O00_12765 PF13333 Integrase core domain E4O00_12790 PF13173 AAA domain E4O00_12790 PF13635 Domain of unknown function (DUF4143) E4O00_12930 PF01192 RNA polymerase Rpb6 E4O00_12935 PF00771 FHIPEP family E4O00_12940 PF01312 FlhB HrpN YscU SpaS Family E4O00_12950 PF01313 Bacterial export proteins, family 3 E4O00_12990 PF01979 Amidohydrolase family E4O00_13010 PF12419 SNF2 Helicase protein E4O00_13010 PF00271 Helicase conserved C-terminal domain E4O00_13010 PF00176 SNF2 family N-terminal domain E4O00_13015 PF00753 Metallo-beta-lactamase superfamily E4O00_13015 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain E4O00_13015 PF10996 Beta-Casp domain E4O00_13020 PF00403 Heavy-metal-associated domain E4O00_13030 PF00293 NUDIX domain E4O00_13035 PF00210 Ferritin-like domain E4O00_13040 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4O00_13040 PF00578 AhpC/TSA family E4O00_13045 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4O00_13045 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4O00_13060 PF00004 ATPase family associated with various cellular activities (AAA) E4O00_13060 PF16193 AAA C-terminal domain E4O00_13060 PF12002 MgsA AAA+ ATPase C terminal E4O00_13065 PF05343 M42 glutamyl aminopeptidase E4O00_13070 PF01476 LysM domain E4O00_13070 PF00756 Putative esterase E4O00_13075 PF01268 Formate--tetrahydrofolate ligase E4O00_13080 PF03129 Anticodon binding domain E4O00_13080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O00_13140 PF07728 AAA domain (dynein-related subfamily) E4O00_13140 PF12102 Domain of unknown function (DUF3578) E4O00_13145 PF01230 HIT domain E4O00_13170 PF08279 HTH domain E4O00_13170 PF02237 Biotin protein ligase C terminal domain E4O00_13170 PF03099 Biotin/lipoate A/B protein ligase family E4O00_13185 PF01515 Phosphate acetyl/butaryl transferase E4O00_13190 PF13174 Tetratricopeptide repeat E4O00_13190 PF13176 Tetratricopeptide repeat E4O00_13195 PF03960 ArsC family E4O00_13200 PF00005 ABC transporter E4O00_13215 PF00204 DNA gyrase B E4O00_13215 PF00986 DNA gyrase B subunit, carboxyl terminus E4O00_13215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O00_13215 PF01751 Toprim domain