locus-tag class description E4O04_00005 PF00308 Bacterial dnaA protein E4O04_00005 PF08299 Bacterial dnaA protein helix-turn-helix E4O04_00005 PF11638 DnaA N-terminal domain E4O04_00010 PF00204 DNA gyrase B E4O04_00010 PF00986 DNA gyrase B subunit, carboxyl terminus E4O04_00010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_00010 PF01751 Toprim domain E4O04_00025 PF17191 RecG wedge domain E4O04_00025 PF13749 Putative ATP-dependent DNA helicase recG C-terminal E4O04_00025 PF00270 DEAD/DEAH box helicase E4O04_00040 PF03129 Anticodon binding domain E4O04_00040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O04_00060 PF00933 Glycosyl hydrolase family 3 N terminal domain E4O04_00060 PF01915 Glycosyl hydrolase family 3 C-terminal domain E4O04_00100 PF01230 HIT domain E4O04_00110 PF02801 Beta-ketoacyl synthase, C-terminal domain E4O04_00110 PF00109 Beta-ketoacyl synthase, N-terminal domain E4O04_00115 PF00501 AMP-binding enzyme E4O04_00115 PF13193 AMP-binding enzyme C-terminal domain E4O04_00120 PF02237 Biotin protein ligase C terminal domain E4O04_00120 PF08279 HTH domain E4O04_00120 PF03099 Biotin/lipoate A/B protein ligase family E4O04_00125 PF01515 Phosphate acetyl/butaryl transferase E4O04_00130 PF13174 Tetratricopeptide repeat E4O04_00130 PF13176 Tetratricopeptide repeat E4O04_00135 PF03960 ArsC family E4O04_00140 PF00005 ABC transporter E4O04_00140 PF12848 ABC transporter E4O04_00150 PF01268 Formate--tetrahydrofolate ligase E4O04_00155 PF01476 LysM domain E4O04_00155 PF00756 Putative esterase E4O04_00160 PF05343 M42 glutamyl aminopeptidase E4O04_00165 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_00165 PF16193 AAA C-terminal domain E4O04_00165 PF12002 MgsA AAA+ ATPase C terminal E4O04_00175 PF13505 Outer membrane protein beta-barrel domain E4O04_00180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4O04_00180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4O04_00185 PF00578 AhpC/TSA family E4O04_00185 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4O04_00190 PF00210 Ferritin-like domain E4O04_00195 PF00293 NUDIX domain E4O04_00205 PF00403 Heavy-metal-associated domain E4O04_00210 PF00271 Helicase conserved C-terminal domain E4O04_00210 PF12419 SNF2 Helicase protein E4O04_00210 PF00176 SNF2 family N-terminal domain E4O04_00215 PF08011 PD-(D/E)XK nuclease superfamily E4O04_00215 PF09820 Predicted AAA-ATPase E4O04_00230 PF01979 Amidohydrolase family E4O04_00270 PF01313 Bacterial export proteins, family 3 E4O04_00275 PF01311 Bacterial export proteins, family 1 E4O04_00280 PF01312 FlhB HrpN YscU SpaS Family E4O04_00285 PF00771 FHIPEP family E4O04_00290 PF01192 RNA polymerase Rpb6 E4O04_00345 PF13173 AAA domain E4O04_00345 PF13635 Domain of unknown function (DUF4143) E4O04_00370 PF00365 Phosphofructokinase E4O04_00385 PF00027 Cyclic nucleotide-binding domain E4O04_00385 PF13545 Crp-like helix-turn-helix domain E4O04_00390 PF01546 Peptidase family M20/M25/M40 E4O04_00390 PF07687 Peptidase dimerisation domain E4O04_00400 PF03979 Sigma-70 factor, region 1.1 E4O04_00400 PF00140 Sigma-70 factor, region 1.2 E4O04_00400 PF04542 Sigma-70 region 2 E4O04_00400 PF04539 Sigma-70 region 3 E4O04_00400 PF04545 Sigma-70, region 4 E4O04_00405 PF01136 Peptidase family U32 E4O04_00405 PF16325 Peptidase family U32 C-terminal domain E4O04_00410 PF02743 Cache domain E4O04_00410 PF00672 HAMP domain E4O04_00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_00415 PF06574 FAD synthetase E4O04_00415 PF01687 Riboflavin kinase E4O04_00420 PF00324 Amino acid permease E4O04_00425 PF00107 Zinc-binding dehydrogenase E4O04_00425 PF08240 Alcohol dehydrogenase GroES-like domain E4O04_00430 PF01791 DeoC/LacD family aldolase E4O04_00435 PF09338 Glycine/sarcosine/betaine reductase component B subunits E4O04_00440 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) E4O04_00445 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) E4O04_00455 PF00171 Aldehyde dehydrogenase family E4O04_00470 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4O04_00470 PF01926 50S ribosome-binding GTPase E4O04_00475 PF05524 PEP-utilising enzyme, N-terminal E4O04_00475 PF00391 PEP-utilising enzyme, mobile domain E4O04_00475 PF02896 PEP-utilising enzyme, TIM barrel domain E4O04_00480 PF13361 UvrD-like helicase C-terminal domain E4O04_00480 PF12705 PD-(D/E)XK nuclease superfamily E4O04_00480 PF00580 UvrD/REP helicase N-terminal domain E4O04_00485 PF12705 PD-(D/E)XK nuclease superfamily E4O04_00490 PF02080 TrkA-C domain E4O04_00490 PF02254 TrkA-N domain E4O04_00495 PF02386 Cation transport protein E4O04_00500 PF01841 Transglutaminase-like superfamily E4O04_00515 PF01406 tRNA synthetases class I (C) catalytic domain E4O04_00515 PF09190 DALR domain E4O04_00520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4O04_00520 PF01565 FAD binding domain E4O04_00530 PF13635 Domain of unknown function (DUF4143) E4O04_00530 PF13173 AAA domain E4O04_00535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4O04_00535 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_00540 PF00664 ABC transporter transmembrane region E4O04_00540 PF00005 ABC transporter E4O04_00540 PF03412 Peptidase C39 family E4O04_00545 PF00664 ABC transporter transmembrane region E4O04_00545 PF03412 Peptidase C39 family E4O04_00545 PF00005 ABC transporter E4O04_00550 PF02661 Fic/DOC family E4O04_00550 PF12728 Helix-turn-helix domain E4O04_00555 PF01555 DNA methylase E4O04_00560 PF07676 WD40-like Beta Propeller Repeat E4O04_00560 PF00326 Prolyl oligopeptidase family E4O04_00585 PF00128 Alpha amylase, catalytic domain E4O04_00585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4O04_00595 PF00266 Aminotransferase class-V E4O04_00600 PF01761 3-dehydroquinate synthase E4O04_00605 PF01048 Phosphorylase superfamily E4O04_00610 PF08011 PD-(D/E)XK nuclease superfamily E4O04_00610 PF09820 Predicted AAA-ATPase E4O04_00630 PF00005 ABC transporter E4O04_00635 PF12683 Protein of unknown function (DUF3798) E4O04_00645 PF00128 Alpha amylase, catalytic domain E4O04_00650 PF01409 tRNA synthetases class II core domain (F) E4O04_00655 PF04225 Opacity-associated protein A LysM-like domain E4O04_00655 PF01551 Peptidase family M23 E4O04_00665 PF03885 Protein of unknown function (DUF327) E4O04_00670 PF04468 PSP1 C-terminal conserved region E4O04_00685 PF03824 High-affinity nickel-transport protein E4O04_00715 PF01207 Dihydrouridine synthase (Dus) E4O04_00730 PF00990 Diguanylate cyclase, GGDEF domain E4O04_00730 PF00072 Response regulator receiver domain E4O04_00745 PF08448 PAS fold E4O04_00745 PF00563 EAL domain E4O04_00745 PF00990 Diguanylate cyclase, GGDEF domain E4O04_00750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4O04_00750 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E4O04_00750 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E4O04_00750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4O04_00755 PF00664 ABC transporter transmembrane region E4O04_00755 PF00005 ABC transporter E4O04_00760 PF00664 ABC transporter transmembrane region E4O04_00760 PF00005 ABC transporter E4O04_00760 PF08021 Siderophore-interacting FAD-binding domain E4O04_00760 PF04954 Siderophore-interacting protein E4O04_00765 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O04_00765 PF00440 Bacterial regulatory proteins, tetR family E4O04_00770 PF00375 Sodium:dicarboxylate symporter family E4O04_00780 PF07729 FCD domain E4O04_00780 PF00392 Bacterial regulatory proteins, gntR family E4O04_00785 PF01266 FAD dependent oxidoreductase E4O04_00790 PF04324 BFD-like [2Fe-2S] binding domain E4O04_00790 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_00800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O04_00800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O04_00825 PF01547 Bacterial extracellular solute-binding protein E4O04_00830 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_00835 PF00005 ABC transporter E4O04_00835 PF08402 TOBE domain E4O04_00850 PF07687 Peptidase dimerisation domain E4O04_00850 PF01546 Peptidase family M20/M25/M40 E4O04_00855 PF07730 Histidine kinase E4O04_00860 PF00196 Bacterial regulatory proteins, luxR family E4O04_00860 PF00072 Response regulator receiver domain E4O04_00870 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_00870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4O04_00875 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_00880 PF00672 HAMP domain E4O04_00880 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_00885 PF01081 KDPG and KHG aldolase E4O04_00925 PF00258 Flavodoxin E4O04_00945 PF00005 ABC transporter E4O04_00950 PF07702 UTRA domain E4O04_00950 PF00392 Bacterial regulatory proteins, gntR family E4O04_00955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_00955 PF00672 HAMP domain E4O04_00955 PF17202 Single cache domain 3 E4O04_00960 PF12320 Type 5 capsule protein repressor C-terminal domain E4O04_00960 PF00149 Calcineurin-like phosphoesterase E4O04_00965 PF13476 AAA domain E4O04_00970 PF02673 Bacitracin resistance protein BacA E4O04_00975 PF09397 Ftsk gamma domain E4O04_00975 PF01580 FtsK/SpoIIIE family E4O04_00975 PF17854 FtsK alpha domain E4O04_00980 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4O04_00980 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain E4O04_00980 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E4O04_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_00985 PF00672 HAMP domain E4O04_00985 PF02743 Cache domain E4O04_01015 PF01470 Pyroglutamyl peptidase E4O04_01035 PF00005 ABC transporter E4O04_01035 PF08402 TOBE domain E4O04_01040 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_01050 PF00672 HAMP domain E4O04_01050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_01060 PF00962 Adenosine/AMP deaminase E4O04_01065 PF01925 Sulfite exporter TauE/SafE E4O04_01070 PF00892 EamA-like transporter family E4O04_01075 PF02661 Fic/DOC family E4O04_01115 PF00005 ABC transporter E4O04_01115 PF00664 ABC transporter transmembrane region E4O04_01125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O04_01140 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4O04_01155 PF02447 GntP family permease E4O04_01160 PF02595 Glycerate kinase family E4O04_01165 PF03600 Citrate transporter E4O04_01170 PF12557 Cob(I)alamin adenosyltransferase N terminal E4O04_01170 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP E4O04_01190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_01195 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_01200 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_01200 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_01205 PF00005 ABC transporter E4O04_01205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_01210 PF00005 ABC transporter E4O04_01210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_01225 PF07238 PilZ domain E4O04_01265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4O04_01265 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4O04_01275 PF00753 Metallo-beta-lactamase superfamily E4O04_01275 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4O04_01295 PF02661 Fic/DOC family E4O04_01310 PF01850 PIN domain E4O04_01345 PF02463 RecF/RecN/SMC N terminal domain E4O04_01350 PF02768 DNA polymerase III beta subunit, C-terminal domain E4O04_01350 PF02767 DNA polymerase III beta subunit, central domain E4O04_01350 PF00712 DNA polymerase III beta subunit, N-terminal domain E4O04_01355 PF01661 Macro domain E4O04_01360 PF02661 Fic/DOC family E4O04_01360 PF13784 Fic/DOC family N-terminal E4O04_01370 PF00005 ABC transporter E4O04_01375 PF01966 HD domain E4O04_01375 PF12072 Domain of unknown function (DUF3552) E4O04_01375 PF00013 KH domain E4O04_01385 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_01390 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_01395 PF17912 MalK OB fold domain E4O04_01395 PF00005 ABC transporter E4O04_01395 PF03459 TOBE domain E4O04_01405 PF02504 Fatty acid synthesis protein E4O04_01410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4O04_01455 PF00005 ABC transporter E4O04_01455 PF00664 ABC transporter transmembrane region E4O04_01460 PF00664 ABC transporter transmembrane region E4O04_01460 PF00005 ABC transporter E4O04_01490 PF13411 MerR HTH family regulatory protein E4O04_01495 PF00106 short chain dehydrogenase E4O04_01510 PF00209 Sodium:neurotransmitter symporter family E4O04_01515 PF01212 Beta-eliminating lyase E4O04_01520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_01520 PF02743 Cache domain E4O04_01520 PF00672 HAMP domain E4O04_01525 PF03601 Conserved hypothetical protein 698 E4O04_01530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E4O04_01535 PF01594 AI-2E family transporter E4O04_01540 PF00268 Ribonucleotide reductase, small chain E4O04_01545 PF08281 Sigma-70, region 4 E4O04_01545 PF04542 Sigma-70 region 2 E4O04_01565 PF01554 MatE E4O04_01570 PF00440 Bacterial regulatory proteins, tetR family E4O04_01570 PF17922 Tetracyclin repressor-like, C-terminal domain E4O04_01580 PF09827 CRISPR associated protein Cas2 E4O04_01585 PF01867 CRISPR associated protein Cas1 E4O04_01590 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 E4O04_01590 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 E4O04_01590 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 E4O04_01590 PF13395 HNH endonuclease E4O04_01595 PF00270 DEAD/DEAH box helicase E4O04_01595 PF16124 RecQ zinc-binding E4O04_01595 PF00570 HRDC domain E4O04_01595 PF00271 Helicase conserved C-terminal domain E4O04_01595 PF09382 RQC domain E4O04_01620 PF00571 CBS domain E4O04_01620 PF03471 Transporter associated domain E4O04_01620 PF01595 Cyclin M transmembrane N-terminal domain E4O04_01625 PF01595 Cyclin M transmembrane N-terminal domain E4O04_01625 PF03471 Transporter associated domain E4O04_01625 PF00571 CBS domain E4O04_01630 PF07726 ATPase family associated with various cellular activities (AAA) E4O04_01630 PF17863 AAA lid domain E4O04_01640 PF02254 TrkA-N domain E4O04_01640 PF02080 TrkA-C domain E4O04_01645 PF02386 Cation transport protein E4O04_01650 PF02511 Thymidylate synthase complementing protein E4O04_01695 PF00005 ABC transporter E4O04_01695 PF09383 NIL domain E4O04_01710 PF01343 Peptidase family S49 E4O04_01715 PF06071 Protein of unknown function (DUF933) E4O04_01715 PF01926 50S ribosome-binding GTPase E4O04_01730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4O04_01740 PF03575 Peptidase family S51 E4O04_01750 PF00990 Diguanylate cyclase, GGDEF domain E4O04_01755 PF05598 Transposase domain (DUF772) E4O04_01755 PF01609 Transposase DDE domain E4O04_01765 PF02789 Cytosol aminopeptidase family, N-terminal domain E4O04_01765 PF00883 Cytosol aminopeptidase family, catalytic domain E4O04_01780 PF02971 Formiminotransferase domain E4O04_01780 PF07837 Formiminotransferase domain, N-terminal subdomain E4O04_01790 PF00521 DNA gyrase/topoisomerase IV, subunit A E4O04_01790 PF03989 DNA gyrase C-terminal domain, beta-propeller E4O04_01795 PF02080 TrkA-C domain E4O04_01795 PF02254 TrkA-N domain E4O04_01805 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E4O04_01835 PF00005 ABC transporter E4O04_01845 PF00072 Response regulator receiver domain E4O04_01845 PF00486 Transcriptional regulatory protein, C terminal E4O04_01855 PF03412 Peptidase C39 family E4O04_01855 PF00005 ABC transporter E4O04_01855 PF00664 ABC transporter transmembrane region E4O04_01860 PF00664 ABC transporter transmembrane region E4O04_01860 PF00005 ABC transporter E4O04_01865 PF00679 Elongation factor G C-terminus E4O04_01865 PF03144 Elongation factor Tu domain 2 E4O04_01865 PF14492 Elongation Factor G, domain II E4O04_01865 PF03764 Elongation factor G, domain IV E4O04_01865 PF00009 Elongation factor Tu GTP binding domain E4O04_01875 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin E4O04_01880 PF01850 PIN domain E4O04_01885 PF00274 Fructose-bisphosphate aldolase class-I E4O04_01890 PF03477 ATP cone domain E4O04_01890 PF02867 Ribonucleotide reductase, barrel domain E4O04_01890 PF00317 Ribonucleotide reductase, all-alpha domain E4O04_01895 PF02743 Cache domain E4O04_01895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_01895 PF00672 HAMP domain E4O04_01905 PF03616 Sodium/glutamate symporter E4O04_01910 PF03023 Lipid II flippase MurJ E4O04_01925 PF00005 ABC transporter E4O04_01925 PF00664 ABC transporter transmembrane region E4O04_01935 PF02875 Mur ligase family, glutamate ligase domain E4O04_01935 PF08245 Mur ligase middle domain E4O04_01940 PF03577 Peptidase family C69 E4O04_01950 PF00005 ABC transporter E4O04_01950 PF03412 Peptidase C39 family E4O04_01950 PF00664 ABC transporter transmembrane region E4O04_01955 PF00664 ABC transporter transmembrane region E4O04_01955 PF00005 ABC transporter E4O04_01970 PF00005 ABC transporter E4O04_01980 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4O04_01980 PF07683 Cobalamin synthesis protein cobW C-terminal domain E4O04_01985 PF00107 Zinc-binding dehydrogenase E4O04_01985 PF08240 Alcohol dehydrogenase GroES-like domain E4O04_01990 PF00005 ABC transporter E4O04_01990 PF17912 MalK OB fold domain E4O04_01995 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_02000 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_02005 PF13416 Bacterial extracellular solute-binding protein E4O04_02015 PF01869 BadF/BadG/BcrA/BcrD ATPase family E4O04_02025 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component E4O04_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4O04_02045 PF03466 LysR substrate binding domain E4O04_02050 PF00672 HAMP domain E4O04_02050 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_02050 PF02743 Cache domain E4O04_02070 PF09820 Predicted AAA-ATPase E4O04_02070 PF08011 PD-(D/E)XK nuclease superfamily E4O04_02075 PF08011 PD-(D/E)XK nuclease superfamily E4O04_02075 PF09820 Predicted AAA-ATPase E4O04_02080 PF08011 PD-(D/E)XK nuclease superfamily E4O04_02080 PF09820 Predicted AAA-ATPase E4O04_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_02085 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4O04_02090 PF00175 Oxidoreductase NAD-binding domain E4O04_02090 PF00970 Oxidoreductase FAD-binding domain E4O04_02090 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B E4O04_02100 PF01435 Peptidase family M48 E4O04_02105 PF00672 HAMP domain E4O04_02105 PF02743 Cache domain E4O04_02105 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_02160 PF00664 ABC transporter transmembrane region E4O04_02160 PF00005 ABC transporter E4O04_02160 PF03412 Peptidase C39 family E4O04_02175 PF02915 Rubrerythrin E4O04_02180 PF09382 RQC domain E4O04_02180 PF00570 HRDC domain E4O04_02180 PF00271 Helicase conserved C-terminal domain E4O04_02180 PF16124 RecQ zinc-binding E4O04_02180 PF00270 DEAD/DEAH box helicase E4O04_02185 PF02565 Recombination protein O C terminal E4O04_02185 PF11967 Recombination protein O N terminal E4O04_02195 PF01702 Queuine tRNA-ribosyltransferase E4O04_02200 PF00005 ABC transporter E4O04_02205 PF00005 ABC transporter E4O04_02210 PF00069 Protein kinase domain E4O04_02250 PF00005 ABC transporter E4O04_02260 PF07722 Peptidase C26 E4O04_02265 PF13520 Amino acid permease E4O04_02280 PF01791 DeoC/LacD family aldolase E4O04_02285 PF00210 Ferritin-like domain E4O04_02290 PF07687 Peptidase dimerisation domain E4O04_02290 PF01546 Peptidase family M20/M25/M40 E4O04_02310 PF01171 PP-loop family E4O04_02315 PF10509 Galactokinase galactose-binding signature E4O04_02315 PF08544 GHMP kinases C terminal E4O04_02315 PF00288 GHMP kinases N terminal domain E4O04_02320 PF01680 SOR/SNZ family E4O04_02330 PF12671 Putative amidase domain E4O04_02335 PF02743 Cache domain E4O04_02335 PF00672 HAMP domain E4O04_02335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_02340 PF00571 CBS domain E4O04_02340 PF01595 Cyclin M transmembrane N-terminal domain E4O04_02340 PF03471 Transporter associated domain E4O04_02345 PF01048 Phosphorylase superfamily E4O04_02370 PF01434 Peptidase family M41 E4O04_02370 PF17862 AAA+ lid domain E4O04_02370 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_02400 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_02415 PF00005 ABC transporter E4O04_02415 PF02687 FtsX-like permease family E4O04_02415 PF12704 MacB-like periplasmic core domain E4O04_02420 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4O04_02435 PF08011 PD-(D/E)XK nuclease superfamily E4O04_02435 PF09820 Predicted AAA-ATPase E4O04_02445 PF00672 HAMP domain E4O04_02445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_02445 PF02743 Cache domain E4O04_02460 PF00005 ABC transporter E4O04_02465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E4O04_02565 PF05598 Transposase domain (DUF772) E4O04_02565 PF01609 Transposase DDE domain E4O04_02580 PF00005 ABC transporter E4O04_02580 PF00664 ABC transporter transmembrane region E4O04_02585 PF00664 ABC transporter transmembrane region E4O04_02585 PF00005 ABC transporter E4O04_02590 PF00005 ABC transporter E4O04_02605 PF17932 Tetracyclin repressor-like, C-terminal domain E4O04_02605 PF00440 Bacterial regulatory proteins, tetR family E4O04_02755 PF02934 GatB/GatE catalytic domain E4O04_02755 PF02637 GatB domain E4O04_02760 PF01425 Amidase E4O04_02800 PF17863 AAA lid domain E4O04_02800 PF07726 ATPase family associated with various cellular activities (AAA) E4O04_02805 PF09323 Domain of unknown function (DUF1980) E4O04_02810 PF03773 Predicted permease E4O04_02825 PF00221 Aromatic amino acid lyase E4O04_02830 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4O04_02835 PF01039 Carboxyl transferase domain E4O04_02840 PF02785 Biotin carboxylase C-terminal domain E4O04_02840 PF00289 Biotin carboxylase, N-terminal domain E4O04_02840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4O04_02845 PF00364 Biotin-requiring enzyme E4O04_02850 PF00270 DEAD/DEAH box helicase E4O04_02850 PF13749 Putative ATP-dependent DNA helicase recG C-terminal E4O04_02850 PF17191 RecG wedge domain E4O04_02860 PF07055 Enoyl reductase FAD binding domain E4O04_02860 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4O04_02860 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4O04_02865 PF01555 DNA methylase E4O04_02880 PF00698 Acyl transferase domain E4O04_02885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4O04_02885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4O04_02905 PF17762 HTH domain found in ParB protein E4O04_02905 PF02195 ParB-like nuclease domain E4O04_02910 PF13614 AAA domain E4O04_02920 PF00005 ABC transporter E4O04_02920 PF16326 ABC transporter C-terminal domain E4O04_02920 PF12848 ABC transporter E4O04_02925 PF00664 ABC transporter transmembrane region E4O04_02925 PF00005 ABC transporter E4O04_02930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O04_02935 PF01890 Cobalamin synthesis G C-terminus E4O04_02935 PF11761 Cobalamin biosynthesis central region E4O04_02935 PF11760 Cobalamin synthesis G N-terminal E4O04_02955 PF01554 MatE E4O04_02965 PF08011 PD-(D/E)XK nuclease superfamily E4O04_02965 PF09820 Predicted AAA-ATPase E4O04_02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O04_02970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4O04_02975 PF02571 Precorrin-6x reductase CbiJ/CobK E4O04_02980 PF00005 ABC transporter E4O04_02990 PF12728 Helix-turn-helix domain E4O04_02990 PF02661 Fic/DOC family E4O04_02995 PF01025 GrpE E4O04_03000 PF00012 Hsp70 protein E4O04_03005 PF00226 DnaJ domain E4O04_03005 PF01556 DnaJ C terminal domain E4O04_03005 PF00684 DnaJ central domain E4O04_03025 PF02557 D-alanyl-D-alanine carboxypeptidase E4O04_03030 PF01545 Cation efflux family E4O04_03030 PF16916 Dimerisation domain of Zinc Transporter E4O04_03035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_03035 PF00005 ABC transporter E4O04_03040 PF00005 ABC transporter E4O04_03040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_03045 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_03045 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_03050 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_03055 PF02743 Cache domain E4O04_03055 PF00672 HAMP domain E4O04_03055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_03060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4O04_03070 PF01195 Peptidyl-tRNA hydrolase E4O04_03075 PF00005 ABC transporter E4O04_03075 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4O04_03090 PF01739 CheR methyltransferase, SAM binding domain E4O04_03090 PF03705 CheR methyltransferase, all-alpha domain E4O04_03095 PF00072 Response regulator receiver domain E4O04_03095 PF01339 CheB methylesterase E4O04_03115 PF03030 Inorganic H+ pyrophosphatase E4O04_03120 PF00072 Response regulator receiver domain E4O04_03120 PF00486 Transcriptional regulatory protein, C terminal E4O04_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_03130 PF00005 ABC transporter E4O04_03145 PF08279 HTH domain E4O04_03145 PF13280 WYL domain E4O04_03160 PF00691 OmpA family E4O04_03170 PF01131 DNA topoisomerase E4O04_03170 PF01751 Toprim domain E4O04_03180 PF02534 Type IV secretory system Conjugative DNA transfer E4O04_03190 PF00437 Type II/IV secretion system protein E4O04_03215 PF03135 CagE, TrbE, VirB family, component of type IV transporter system E4O04_03240 PF03743 Bacterial conjugation TrbI-like protein E4O04_03290 PF00271 Helicase conserved C-terminal domain E4O04_03290 PF00176 SNF2 family N-terminal domain E4O04_03290 PF04434 SWIM zinc finger E4O04_03305 PF04002 RadC-like JAB domain E4O04_03345 PF01555 DNA methylase E4O04_03350 PF00436 Single-strand binding protein family E4O04_03405 PF10371 Domain of unknown function E4O04_03405 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4O04_03405 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4O04_03405 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4O04_03405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4O04_03430 PF06418 CTP synthase N-terminus E4O04_03430 PF00117 Glutamine amidotransferase class-I E4O04_03435 PF00155 Aminotransferase class I and II E4O04_03440 PF00448 SRP54-type protein, GTPase domain E4O04_03445 PF10609 NUBPL iron-transfer P-loop NTPase E4O04_03455 PF04545 Sigma-70, region 4 E4O04_03455 PF04539 Sigma-70 region 3 E4O04_03455 PF04542 Sigma-70 region 2 E4O04_03485 PF14821 Threonine synthase N terminus E4O04_03485 PF00291 Pyridoxal-phosphate dependent enzyme E4O04_03515 PF00953 Glycosyl transferase family 4 E4O04_03520 PF01066 CDP-alcohol phosphatidyltransferase E4O04_03525 PF00464 Serine hydroxymethyltransferase E4O04_03540 PF00571 CBS domain E4O04_03540 PF00478 IMP dehydrogenase / GMP reductase domain E4O04_03545 PF08264 Anticodon-binding domain of tRNA E4O04_03545 PF00133 tRNA synthetases class I (I, L, M and V) E4O04_03565 PF11849 Domain of unknown function (DUF3369) E4O04_03570 PF07685 CobB/CobQ-like glutamine amidotransferase domain E4O04_03570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4O04_03575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O04_03580 PF06180 Cobalt chelatase (CbiK) E4O04_03590 PF00392 Bacterial regulatory proteins, gntR family E4O04_03590 PF07702 UTRA domain E4O04_03595 PF00005 ABC transporter E4O04_03605 PF00005 ABC transporter E4O04_03605 PF00571 CBS domain E4O04_03615 PF04324 BFD-like [2Fe-2S] binding domain E4O04_03615 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_03620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E4O04_03620 PF01266 FAD dependent oxidoreductase E4O04_03630 PF02661 Fic/DOC family E4O04_03630 PF12728 Helix-turn-helix domain E4O04_03640 PF01432 Peptidase family M3 E4O04_03640 PF08439 Oligopeptidase F E4O04_03660 PF05958 tRNA (Uracil-5-)-methyltransferase E4O04_03665 PF02811 PHP domain E4O04_03675 PF13545 Crp-like helix-turn-helix domain E4O04_03675 PF00027 Cyclic nucleotide-binding domain E4O04_03680 PF01252 Signal peptidase (SPase) II E4O04_03685 PF02424 ApbE family E4O04_03705 PF00919 Uncharacterized protein family UPF0004 E4O04_03705 PF04055 Radical SAM superfamily E4O04_03705 PF18693 TRAM domain E4O04_03720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_03720 PF00672 HAMP domain E4O04_03720 PF02743 Cache domain E4O04_03725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_03725 PF02743 Cache domain E4O04_03725 PF00672 HAMP domain E4O04_03735 PF01175 Urocanase Rossmann-like domain E4O04_03735 PF17392 Urocanase C-terminal domain E4O04_03735 PF17391 Urocanase N-terminal domain E4O04_03740 PF01906 Putative heavy-metal-binding E4O04_03745 PF07670 Nucleoside recognition E4O04_03755 PF13173 AAA domain E4O04_03755 PF13635 Domain of unknown function (DUF4143) E4O04_03770 PF01624 MutS domain I E4O04_03770 PF05188 MutS domain II E4O04_03770 PF05192 MutS domain III E4O04_03770 PF05190 MutS family domain IV E4O04_03770 PF00488 MutS domain V E4O04_03780 PF01103 Surface antigen E4O04_03780 PF07244 Surface antigen variable number repeat E4O04_03790 PF02223 Thymidylate kinase E4O04_03800 PF00834 Ribulose-phosphate 3 epimerase family E4O04_03820 PF00158 Sigma-54 interaction domain E4O04_03820 PF02830 V4R domain E4O04_03820 PF06505 Activator of aromatic catabolism E4O04_03820 PF02954 Bacterial regulatory protein, Fis family E4O04_03825 PF03880 DbpA RNA binding domain E4O04_03835 PF02127 Aminopeptidase I zinc metalloprotease (M18) E4O04_03850 PF12169 DNA polymerase III subunits gamma and tau domain III E4O04_03855 PF00672 HAMP domain E4O04_03855 PF12729 Four helix bundle sensory module for signal transduction E4O04_03855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_03860 PF03577 Peptidase family C69 E4O04_03875 PF00990 Diguanylate cyclase, GGDEF domain E4O04_03875 PF00072 Response regulator receiver domain E4O04_03880 PF00990 Diguanylate cyclase, GGDEF domain E4O04_03885 PF00270 DEAD/DEAH box helicase E4O04_03885 PF00271 Helicase conserved C-terminal domain E4O04_03885 PF17191 RecG wedge domain E4O04_03905 PF00849 RNA pseudouridylate synthase E4O04_03915 PF01926 50S ribosome-binding GTPase E4O04_03920 PF00342 Phosphoglucose isomerase E4O04_03930 PF01066 CDP-alcohol phosphatidyltransferase E4O04_03935 PF02229 Transcriptional Coactivator p15 (PC4) E4O04_03940 PF00075 RNase H E4O04_03945 PF00793 DAHP synthetase I family E4O04_03950 PF02926 THUMP domain E4O04_03950 PF02568 Thiamine biosynthesis protein (ThiI) E4O04_03970 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E4O04_03980 PF00950 ABC 3 transport family E4O04_03985 PF00005 ABC transporter E4O04_04000 PF00664 ABC transporter transmembrane region E4O04_04000 PF00005 ABC transporter E4O04_04005 PF00664 ABC transporter transmembrane region E4O04_04005 PF00005 ABC transporter E4O04_04010 PF09820 Predicted AAA-ATPase E4O04_04010 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04015 PF02570 Precorrin-8X methylmutase E4O04_04020 PF01430 Hsp33 protein E4O04_04025 PF01921 tRNA synthetases class I (K) E4O04_04040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) E4O04_04040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 E4O04_04080 PF00391 PEP-utilising enzyme, mobile domain E4O04_04080 PF00224 Pyruvate kinase, barrel domain E4O04_04080 PF02887 Pyruvate kinase, alpha/beta domain E4O04_04085 PF00730 HhH-GPD superfamily base excision DNA repair protein E4O04_04110 PF04055 Radical SAM superfamily E4O04_04140 PF01973 Protein of unknown function DUF115 E4O04_04145 PF00005 ABC transporter E4O04_04150 PF00005 ABC transporter E4O04_04150 PF00664 ABC transporter transmembrane region E4O04_04170 PF09820 Predicted AAA-ATPase E4O04_04170 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04175 PF06745 KaiC E4O04_04175 PF18073 Rubredoxin metal binding domain E4O04_04200 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_04210 PF02527 rRNA small subunit methyltransferase G E4O04_04215 PF00171 Aldehyde dehydrogenase family E4O04_04235 PF00814 Glycoprotease family E4O04_04250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4O04_04250 PF00072 Response regulator receiver domain E4O04_04250 PF00512 His Kinase A (phospho-acceptor) domain E4O04_04250 PF01627 Hpt domain E4O04_04250 PF00672 HAMP domain E4O04_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_04255 PF00072 Response regulator receiver domain E4O04_04255 PF00486 Transcriptional regulatory protein, C terminal E4O04_04265 PF08241 Methyltransferase domain E4O04_04275 PF00672 HAMP domain E4O04_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_04275 PF02743 Cache domain E4O04_04285 PF03167 Uracil DNA glycosylase superfamily E4O04_04290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4O04_04290 PF00271 Helicase conserved C-terminal domain E4O04_04290 PF17764 3′ DNA-binding domain (3′BD) E4O04_04290 PF00270 DEAD/DEAH box helicase E4O04_04290 PF18074 Primosomal protein N C-terminal domain E4O04_04325 PF03462 PCRF domain E4O04_04325 PF00472 RF-1 domain E4O04_04330 PF17827 PrmC N-terminal domain E4O04_04330 PF05175 Methyltransferase small domain E4O04_04340 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04340 PF09820 Predicted AAA-ATPase E4O04_04365 PF02743 Cache domain E4O04_04365 PF00672 HAMP domain E4O04_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_04370 PF05343 M42 glutamyl aminopeptidase E4O04_04375 PF02254 TrkA-N domain E4O04_04375 PF07885 Ion channel E4O04_04415 PF00696 Amino acid kinase family E4O04_04420 PF01554 MatE E4O04_04425 PF01165 Ribosomal protein S21 E4O04_04435 PF02772 S-adenosylmethionine synthetase, central domain E4O04_04435 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4O04_04435 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4O04_04450 PF01206 Sulfurtransferase TusA E4O04_04470 PF00266 Aminotransferase class-V E4O04_04475 PF00005 ABC transporter E4O04_04475 PF00664 ABC transporter transmembrane region E4O04_04480 PF04954 Siderophore-interacting protein E4O04_04480 PF08021 Siderophore-interacting FAD-binding domain E4O04_04480 PF00005 ABC transporter E4O04_04480 PF00664 ABC transporter transmembrane region E4O04_04485 PF00440 Bacterial regulatory proteins, tetR family E4O04_04500 PF00005 ABC transporter E4O04_04505 PF00440 Bacterial regulatory proteins, tetR family E4O04_04505 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O04_04515 PF07669 Eco57I restriction-modification methylase E4O04_04525 PF09820 Predicted AAA-ATPase E4O04_04525 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04530 PF02547 Queuosine biosynthesis protein E4O04_04535 PF12796 Ankyrin repeats (3 copies) E4O04_04540 PF01871 AMMECR1 E4O04_04540 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E4O04_04545 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04545 PF09820 Predicted AAA-ATPase E4O04_04555 PF01202 Shikimate kinase E4O04_04560 PF03949 Malic enzyme, NAD binding domain E4O04_04560 PF00390 Malic enzyme, N-terminal domain E4O04_04565 PF00183 Hsp90 protein E4O04_04615 PF01609 Transposase DDE domain E4O04_04615 PF05598 Transposase domain (DUF772) E4O04_04625 PF01541 GIY-YIG catalytic domain E4O04_04625 PF08459 UvrC Helix-hairpin-helix N-terminal E4O04_04625 PF02151 UvrB/uvrC motif E4O04_04630 PF09820 Predicted AAA-ATPase E4O04_04630 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04635 PF03841 L-seryl-tRNA selenium transferase E4O04_04635 PF12390 Selenocysteine synthase N terminal E4O04_04640 PF00005 ABC transporter E4O04_04640 PF00664 ABC transporter transmembrane region E4O04_04640 PF03412 Peptidase C39 family E4O04_04660 PF00471 Ribosomal protein L33 E4O04_04670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4O04_04675 PF02357 Transcription termination factor nusG E4O04_04675 PF00467 KOW motif E4O04_04680 PF00298 Ribosomal protein L11, RNA binding domain E4O04_04680 PF03946 Ribosomal protein L11, N-terminal domain E4O04_04685 PF00687 Ribosomal protein L1p/L10e family E4O04_04690 PF00466 Ribosomal protein L10 E4O04_04695 PF16320 Ribosomal protein L7/L12 dimerisation domain E4O04_04695 PF00542 Ribosomal protein L7/L12 C-terminal domain E4O04_04700 PF04563 RNA polymerase beta subunit E4O04_04700 PF10385 RNA polymerase beta subunit external 1 domain E4O04_04700 PF04565 RNA polymerase Rpb2, domain 3 E4O04_04700 PF04561 RNA polymerase Rpb2, domain 2 E4O04_04700 PF00562 RNA polymerase Rpb2, domain 6 E4O04_04700 PF04560 RNA polymerase Rpb2, domain 7 E4O04_04705 PF04983 RNA polymerase Rpb1, domain 3 E4O04_04705 PF00623 RNA polymerase Rpb1, domain 2 E4O04_04705 PF04998 RNA polymerase Rpb1, domain 5 E4O04_04705 PF05000 RNA polymerase Rpb1, domain 4 E4O04_04705 PF04997 RNA polymerase Rpb1, domain 1 E4O04_04735 PF00343 Carbohydrate phosphorylase E4O04_04755 PF00155 Aminotransferase class I and II E4O04_04770 PF09820 Predicted AAA-ATPase E4O04_04770 PF08011 PD-(D/E)XK nuclease superfamily E4O04_04780 PF13537 Glutamine amidotransferase domain E4O04_04780 PF00156 Phosphoribosyl transferase domain E4O04_04805 PF00309 Sigma-54 factor, Activator interacting domain (AID) E4O04_04805 PF04963 Sigma-54 factor, core binding domain E4O04_04805 PF04552 Sigma-54, DNA binding domain E4O04_04810 PF00753 Metallo-beta-lactamase superfamily E4O04_04820 PF01370 NAD dependent epimerase/dehydratase family E4O04_04830 PF00468 Ribosomal protein L34 E4O04_04835 PF00825 Ribonuclease P E4O04_04840 PF01809 Putative membrane protein insertion efficiency factor E4O04_04845 PF14849 YidC periplasmic domain E4O04_04845 PF02096 60Kd inner membrane protein E4O04_04850 PF14804 Jag N-terminus E4O04_04850 PF01424 R3H domain E4O04_04860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4O04_04870 PF03186 CobD/Cbib protein E4O04_04875 PF00574 Clp protease E4O04_04880 PF13808 DDE_Tnp_1-associated E4O04_04880 PF01609 Transposase DDE domain E4O04_04890 PF03952 Enolase, N-terminal domain E4O04_04890 PF00113 Enolase, C-terminal TIM barrel domain E4O04_04945 PF02608 ABC transporter substrate-binding protein PnrA-like E4O04_04950 PF00005 ABC transporter E4O04_04955 PF02653 Branched-chain amino acid transport system / permease component E4O04_04960 PF02653 Branched-chain amino acid transport system / permease component E4O04_04970 PF04011 LemA family E4O04_04975 PF03009 Glycerophosphoryl diester phosphodiesterase family E4O04_04985 PF07009 NusG domain II E4O04_04990 PF00563 EAL domain E4O04_04990 PF12792 CSS motif domain associated with EAL E4O04_04995 PF03102 NeuB family E4O04_04995 PF08666 SAF domain E4O04_05010 PF00817 impB/mucB/samB family E4O04_05010 PF11799 impB/mucB/samB family C-terminal domain E4O04_05010 PF11798 IMS family HHH motif E4O04_05020 PF13277 YmdB-like protein E4O04_05035 PF08207 Elongation factor P (EF-P) KOW-like domain E4O04_05035 PF01132 Elongation factor P (EF-P) OB domain E4O04_05035 PF09285 Elongation factor P, C-terminal E4O04_05040 PF05746 DALR anticodon binding domain E4O04_05040 PF00750 tRNA synthetases class I (R) E4O04_05040 PF03485 Arginyl tRNA synthetase N terminal domain E4O04_05045 PF00156 Phosphoribosyl transferase domain E4O04_05050 PF04002 RadC-like JAB domain E4O04_05055 PF07943 Penicillin-binding protein 5, C-terminal domain E4O04_05055 PF00768 D-alanyl-D-alanine carboxypeptidase E4O04_05060 PF00152 tRNA synthetases class II (D, K and N) E4O04_05060 PF01336 OB-fold nucleic acid binding domain E4O04_05070 PF01180 Dihydroorotate dehydrogenase E4O04_05075 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05080 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_05080 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_05090 PF00005 ABC transporter E4O04_05090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05095 PF00005 ABC transporter E4O04_05095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_05115 PF00830 Ribosomal L28 family E4O04_05125 PF01812 5-formyltetrahydrofolate cyclo-ligase family E4O04_05140 PF01204 Trehalase E4O04_05145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4O04_05145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4O04_05150 PF01226 Formate/nitrite transporter E4O04_05155 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4O04_05155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4O04_05160 PF00156 Phosphoribosyl transferase domain E4O04_05170 PF00669 Bacterial flagellin N-terminal helical region E4O04_05170 PF00700 Bacterial flagellin C-terminal helical region E4O04_05175 PF00460 Flagella basal body rod protein E4O04_05175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O04_05180 PF00460 Flagella basal body rod protein E4O04_05180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O04_05185 PF10135 Rod binding protein E4O04_05190 PF00672 HAMP domain E4O04_05190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_05190 PF02743 Cache domain E4O04_05195 PF17755 UvrA DNA-binding domain E4O04_05195 PF17760 UvrA interaction domain E4O04_05195 PF00005 ABC transporter E4O04_05205 PF16921 Tex protein YqgF-like domain E4O04_05205 PF09371 Tex-like protein N-terminal domain E4O04_05205 PF00575 S1 RNA binding domain E4O04_05205 PF17674 HHH domain E4O04_05230 PF05362 Lon protease (S16) C-terminal proteolytic domain E4O04_05230 PF13654 AAA domain E4O04_05235 PF02601 Exonuclease VII, large subunit E4O04_05235 PF13742 OB-fold nucleic acid binding domain E4O04_05245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E4O04_05245 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E4O04_05255 PF16811 TRAP transporter T-component E4O04_05265 PF07476 Methylaspartate ammonia-lyase C-terminus E4O04_05265 PF05034 Methylaspartate ammonia-lyase N-terminus E4O04_05270 PF01212 Beta-eliminating lyase E4O04_05275 PF01177 Asp/Glu/Hydantoin racemase E4O04_05280 PF00375 Sodium:dicarboxylate symporter family E4O04_05285 PF02310 B12 binding domain E4O04_05290 PF13941 MutL protein E4O04_05295 PF01783 Ribosomal L32p protein family E4O04_05300 PF00550 Phosphopantetheine attachment site E4O04_05305 PF00035 Double-stranded RNA binding motif E4O04_05305 PF14622 Ribonuclease-III-like E4O04_05310 PF00011 Hsp20/alpha crystallin family E4O04_05325 PF01743 Poly A polymerase head domain E4O04_05325 PF13735 tRNA nucleotidyltransferase domain 2 putative E4O04_05325 PF12627 Probable RNA and SrmB- binding site of polymerase A E4O04_05330 PF01544 CorA-like Mg2+ transporter protein E4O04_05335 PF02719 Polysaccharide biosynthesis protein E4O04_05340 PF06574 FAD synthetase E4O04_05340 PF01687 Riboflavin kinase E4O04_05345 PF00312 Ribosomal protein S15 E4O04_05350 PF00013 KH domain E4O04_05350 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E4O04_05350 PF01138 3' exoribonuclease family, domain 1 E4O04_05350 PF03725 3' exoribonuclease family, domain 2 E4O04_05350 PF00575 S1 RNA binding domain E4O04_05355 PF00692 dUTPase E4O04_05370 PF04304 Protein of unknown function (DUF454) E4O04_05375 PF00164 Ribosomal protein S12/S23 E4O04_05380 PF00177 Ribosomal protein S7p/S5e E4O04_05385 PF00009 Elongation factor Tu GTP binding domain E4O04_05385 PF00679 Elongation factor G C-terminus E4O04_05385 PF14492 Elongation Factor G, domain II E4O04_05385 PF03144 Elongation factor Tu domain 2 E4O04_05385 PF03764 Elongation factor G, domain IV E4O04_05400 PF00301 Rubredoxin E4O04_05410 PF00158 Sigma-54 interaction domain E4O04_05410 PF02954 Bacterial regulatory protein, Fis family E4O04_05410 PF13426 PAS domain E4O04_05415 PF00155 Aminotransferase class I and II E4O04_05420 PF03553 Na+/H+ antiporter family E4O04_05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_05425 PF00672 HAMP domain E4O04_05425 PF02743 Cache domain E4O04_05430 PF00005 ABC transporter E4O04_05430 PF00664 ABC transporter transmembrane region E4O04_05435 PF00005 ABC transporter E4O04_05435 PF00664 ABC transporter transmembrane region E4O04_05440 PF01554 MatE E4O04_05445 PF09820 Predicted AAA-ATPase E4O04_05445 PF08011 PD-(D/E)XK nuclease superfamily E4O04_05450 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_05460 PF00005 ABC transporter E4O04_05465 PF00005 ABC transporter E4O04_05475 PF09334 tRNA synthetases class I (M) E4O04_05475 PF01588 Putative tRNA binding domain E4O04_05485 PF00005 ABC transporter E4O04_05485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05490 PF00005 ABC transporter E4O04_05495 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05495 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_05500 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_05515 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05520 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_05520 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_05525 PF00005 ABC transporter E4O04_05525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05530 PF00005 ABC transporter E4O04_05530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_05535 PF01613 Flavin reductase like domain E4O04_05535 PF00753 Metallo-beta-lactamase superfamily E4O04_05540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4O04_05545 PF00398 Ribosomal RNA adenine dimethylase E4O04_05555 PF00849 RNA pseudouridylate synthase E4O04_05560 PF01479 S4 domain E4O04_05560 PF00849 RNA pseudouridylate synthase E4O04_05565 PF08245 Mur ligase middle domain E4O04_05565 PF02875 Mur ligase family, glutamate ligase domain E4O04_05570 PF02875 Mur ligase family, glutamate ligase domain E4O04_05570 PF01225 Mur ligase family, catalytic domain E4O04_05570 PF08245 Mur ligase middle domain E4O04_05575 PF03755 YicC-like family, N-terminal region E4O04_05575 PF08340 Domain of unknown function (DUF1732) E4O04_05595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O04_05595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4O04_05595 PF03129 Anticodon binding domain E4O04_05610 PF16258 Domain of unknown function (DUF4912) E4O04_05620 PF00842 Alanine racemase, C-terminal domain E4O04_05620 PF01168 Alanine racemase, N-terminal domain E4O04_05625 PF02401 LytB protein E4O04_05655 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4O04_05660 PF02033 Ribosome-binding factor A E4O04_05665 PF11987 Translation-initiation factor 2 E4O04_05665 PF04760 Translation initiation factor IF-2, N-terminal region E4O04_05665 PF00009 Elongation factor Tu GTP binding domain E4O04_05670 PF00575 S1 RNA binding domain E4O04_05670 PF08529 NusA N-terminal domain E4O04_05670 PF13184 NusA-like KH domain E4O04_05675 PF02576 RimP N-terminal domain E4O04_05675 PF17384 RimP C-terminal SH3 domain E4O04_05680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4O04_05680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4O04_05695 PF05191 Adenylate kinase, active site lid E4O04_05705 PF00665 Integrase core domain E4O04_05705 PF13333 Integrase core domain E4O04_05705 PF13276 HTH-like domain E4O04_05710 PF08011 PD-(D/E)XK nuclease superfamily E4O04_05710 PF09820 Predicted AAA-ATPase E4O04_05725 PF00005 ABC transporter E4O04_05730 PF02687 FtsX-like permease family E4O04_05730 PF00005 ABC transporter E4O04_05730 PF12704 MacB-like periplasmic core domain E4O04_05735 PF00152 tRNA synthetases class II (D, K and N) E4O04_05750 PF08668 HDOD domain E4O04_05755 PF02146 Sir2 family E4O04_05765 PF01416 tRNA pseudouridine synthase E4O04_05770 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) E4O04_05780 PF01725 Ham1 family E4O04_05785 PF00664 ABC transporter transmembrane region E4O04_05785 PF00005 ABC transporter E4O04_05790 PF07859 alpha/beta hydrolase fold E4O04_05795 PF01136 Peptidase family U32 E4O04_05795 PF16325 Peptidase family U32 C-terminal domain E4O04_05815 PF01212 Beta-eliminating lyase E4O04_05835 PF01740 STAS domain E4O04_05875 PF02390 Putative methyltransferase E4O04_05880 PF01264 Chorismate synthase E4O04_06025 PF17762 HTH domain found in ParB protein E4O04_06025 PF02195 ParB-like nuclease domain E4O04_06075 PF02899 Phage integrase, N-terminal SAM-like domain E4O04_06075 PF00589 Phage integrase family E4O04_06090 PF00118 TCP-1/cpn60 chaperonin family E4O04_06115 PF02233 NAD(P) transhydrogenase beta subunit E4O04_06125 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E4O04_06125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4O04_06125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4O04_06165 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4O04_06165 PF00326 Prolyl oligopeptidase family E4O04_06170 PF02381 MraZ protein, putative antitoxin-like E4O04_06175 PF01795 MraW methylase family E4O04_06185 PF08245 Mur ligase middle domain E4O04_06185 PF02875 Mur ligase family, glutamate ligase domain E4O04_06185 PF01225 Mur ligase family, catalytic domain E4O04_06190 PF01098 Cell cycle protein E4O04_06200 PF02491 SHS2 domain inserted in FTSA E4O04_06205 PF12327 FtsZ family, C-terminal domain E4O04_06205 PF00091 Tubulin/FtsZ family, GTPase domain E4O04_06210 PF02899 Phage integrase, N-terminal SAM-like domain E4O04_06210 PF00589 Phage integrase family E4O04_06220 PF02481 DNA recombination-mediator protein A E4O04_06220 PF17782 DprA winged helix domain E4O04_06225 PF01131 DNA topoisomerase E4O04_06225 PF01751 Toprim domain E4O04_06225 PF01396 Topoisomerase DNA binding C4 zinc finger E4O04_06230 PF02899 Phage integrase, N-terminal SAM-like domain E4O04_06230 PF00589 Phage integrase family E4O04_06235 PF00227 Proteasome subunit E4O04_06240 PF07724 AAA domain (Cdc48 subfamily) E4O04_06240 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_06245 PF00460 Flagella basal body rod protein E4O04_06250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O04_06250 PF00460 Flagella basal body rod protein E4O04_06255 PF02049 Flagellar hook-basal body complex protein FliE E4O04_06260 PF01514 Secretory protein of YscJ/FliF family E4O04_06260 PF08345 Flagellar M-ring protein C-terminal E4O04_06265 PF01706 FliG C-terminal domain E4O04_06265 PF14841 FliG middle domain E4O04_06265 PF14842 FliG N-terminal domain E4O04_06270 PF02108 Flagellar assembly protein FliH E4O04_06275 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O04_06275 PF18269 T3SS EscN ATPase C-terminal domain E4O04_06275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O04_06290 PF00933 Glycosyl hydrolase family 3 N terminal domain E4O04_06300 PF00950 ABC 3 transport family E4O04_06305 PF00950 ABC 3 transport family E4O04_06310 PF00005 ABC transporter E4O04_06315 PF01297 Zinc-uptake complex component A periplasmic E4O04_06320 PF10282 Lactonase, 7-bladed beta-propeller E4O04_06335 PF00753 Metallo-beta-lactamase superfamily E4O04_06360 PF00121 Triosephosphate isomerase E4O04_06375 PF02562 PhoH-like protein E4O04_06380 PF01966 HD domain E4O04_06380 PF07697 7TM-HD extracellular E4O04_06380 PF07698 7TM receptor with intracellular HD hydrolase E4O04_06385 PF02130 Uncharacterized protein family UPF0054 E4O04_06390 PF00571 CBS domain E4O04_06390 PF03471 Transporter associated domain E4O04_06405 PF01882 Protein of unknown function DUF58 E4O04_06415 PF00092 von Willebrand factor type A domain E4O04_06435 PF00488 MutS domain V E4O04_06435 PF01713 Smr domain E4O04_06440 PF01966 HD domain E4O04_06440 PF00072 Response regulator receiver domain E4O04_06455 PF01235 Sodium:alanine symporter family E4O04_06460 PF12804 MobA-like NTP transferase domain E4O04_06465 PF02028 BCCT, betaine/carnitine/choline family transporter E4O04_06480 PF04551 GcpE protein E4O04_06485 PF12729 Four helix bundle sensory module for signal transduction E4O04_06485 PF00672 HAMP domain E4O04_06485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_06495 PF02769 AIR synthase related protein, C-terminal domain E4O04_06495 PF00586 AIR synthase related protein, N-terminal domain E4O04_06500 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E4O04_06500 PF02843 Phosphoribosylglycinamide synthetase, C domain E4O04_06500 PF02844 Phosphoribosylglycinamide synthetase, N domain E4O04_06510 PF01555 DNA methylase E4O04_06515 PF04556 DpnII restriction endonuclease E4O04_06520 PF02086 D12 class N6 adenine-specific DNA methyltransferase E4O04_06530 PF02256 Iron hydrogenase small subunit E4O04_06530 PF02906 Iron only hydrogenase large subunit, C-terminal domain E4O04_06530 PF12838 4Fe-4S dicluster domain E4O04_06535 PF04260 Protein of unknown function (DUF436) E4O04_06540 PF00586 AIR synthase related protein, N-terminal domain E4O04_06540 PF02769 AIR synthase related protein, C-terminal domain E4O04_06540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E4O04_06555 PF01734 Patatin-like phospholipase E4O04_06575 PF17868 AAA lid domain E4O04_06575 PF12592 Protein of unknown function (DUF3763) E4O04_06575 PF07728 AAA domain (dynein-related subfamily) E4O04_06585 PF05762 VWA domain containing CoxE-like protein E4O04_06605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_06605 PF00672 HAMP domain E4O04_06605 PF02743 Cache domain E4O04_06620 PF02559 CarD-like/TRCF domain E4O04_06620 PF00270 DEAD/DEAH box helicase E4O04_06620 PF00271 Helicase conserved C-terminal domain E4O04_06620 PF03461 TRCF domain E4O04_06620 PF17757 UvrB interaction domain E4O04_06625 PF00005 ABC transporter E4O04_06645 PF01523 Putative modulator of DNA gyrase E4O04_06650 PF01523 Putative modulator of DNA gyrase E4O04_06655 PF00381 PTS HPr component phosphorylation site E4O04_06660 PF07475 HPr Serine kinase C-terminal domain E4O04_06660 PF02603 HPr Serine kinase N terminus E4O04_06665 PF13808 DDE_Tnp_1-associated E4O04_06665 PF01609 Transposase DDE domain E4O04_06675 PF01476 LysM domain E4O04_06675 PF00877 NlpC/P60 family E4O04_06695 PF02463 RecF/RecN/SMC N terminal domain E4O04_06710 PF00456 Transketolase, thiamine diphosphate binding domain E4O04_06710 PF02779 Transketolase, pyrimidine binding domain E4O04_06715 PF01523 Putative modulator of DNA gyrase E4O04_06725 PF03412 Peptidase C39 family E4O04_06725 PF00005 ABC transporter E4O04_06725 PF00664 ABC transporter transmembrane region E4O04_06730 PF05872 Bacterial protein of unknown function (DUF853) E4O04_06740 PF00905 Penicillin binding protein transpeptidase domain E4O04_06740 PF03717 Penicillin-binding Protein dimerisation domain E4O04_06770 PF09186 Domain of unknown function (DUF1949) E4O04_06770 PF01205 Uncharacterized protein family UPF0029 E4O04_06795 PF03477 ATP cone domain E4O04_06805 PF01145 SPFH domain / Band 7 family E4O04_06810 PF01145 SPFH domain / Band 7 family E4O04_06820 PF03062 MBOAT, membrane-bound O-acyltransferase family E4O04_06830 PF08544 GHMP kinases C terminal E4O04_06830 PF00288 GHMP kinases N terminal domain E4O04_06835 PF04026 SpoVG E4O04_06845 PF01386 Ribosomal L25p family E4O04_06845 PF14693 Ribosomal protein TL5, C-terminal domain E4O04_06850 PF01171 PP-loop family E4O04_06860 PF13180 PDZ domain E4O04_06860 PF17820 PDZ domain E4O04_06880 PF08275 DNA primase catalytic core, N-terminal domain E4O04_06880 PF01807 CHC2 zinc finger E4O04_06885 PF03979 Sigma-70 factor, region 1.1 E4O04_06885 PF00140 Sigma-70 factor, region 1.2 E4O04_06885 PF04539 Sigma-70 region 3 E4O04_06885 PF04545 Sigma-70, region 4 E4O04_06885 PF04542 Sigma-70 region 2 E4O04_06920 PF00905 Penicillin binding protein transpeptidase domain E4O04_06920 PF03717 Penicillin-binding Protein dimerisation domain E4O04_06925 PF01098 Cell cycle protein E4O04_06940 PF01263 Aldose 1-epimerase E4O04_06950 PF00860 Permease family E4O04_06955 PF08264 Anticodon-binding domain of tRNA E4O04_06955 PF00133 tRNA synthetases class I (I, L, M and V) E4O04_06955 PF10458 Valyl tRNA synthetase tRNA binding arm E4O04_06990 PF13280 WYL domain E4O04_06990 PF08279 HTH domain E4O04_07035 PF04055 Radical SAM superfamily E4O04_07035 PF13186 Iron-sulfur cluster-binding domain E4O04_07040 PF00664 ABC transporter transmembrane region E4O04_07040 PF00005 ABC transporter E4O04_07050 PF00005 ABC transporter E4O04_07060 PF02311 AraC-like ligand binding domain E4O04_07060 PF12833 Helix-turn-helix domain E4O04_07095 PF00005 ABC transporter E4O04_07100 PF12344 Ultra-violet resistance protein B E4O04_07100 PF02151 UvrB/uvrC motif E4O04_07100 PF17757 UvrB interaction domain E4O04_07100 PF00271 Helicase conserved C-terminal domain E4O04_07100 PF04851 Type III restriction enzyme, res subunit E4O04_07105 PF01256 Carbohydrate kinase E4O04_07105 PF03853 YjeF-related protein N-terminus E4O04_07110 PF00773 RNB domain E4O04_07135 PF01467 Cytidylyltransferase-like E4O04_07150 PF01991 ATP synthase (E/31 kDa) subunit E4O04_07155 PF01022 Bacterial regulatory protein, arsR family E4O04_07160 PF00403 Heavy-metal-associated domain E4O04_07175 PF00849 RNA pseudouridylate synthase E4O04_07175 PF01479 S4 domain E4O04_07190 PF13375 RnfC Barrel sandwich hybrid domain E4O04_07190 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4O04_07190 PF13237 4Fe-4S dicluster domain E4O04_07190 PF10531 SLBB domain E4O04_07195 PF03116 NQR2, RnfD, RnfE family E4O04_07225 PF10609 NUBPL iron-transfer P-loop NTPase E4O04_07235 PF01790 Prolipoprotein diacylglyceryl transferase E4O04_07240 PF02540 NAD synthase E4O04_07250 PF00005 ABC transporter E4O04_07250 PF16326 ABC transporter C-terminal domain E4O04_07250 PF12848 ABC transporter E4O04_07255 PF08239 Bacterial SH3 domain E4O04_07270 PF01966 HD domain E4O04_07295 PF00999 Sodium/hydrogen exchanger family E4O04_07315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4O04_07315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4O04_07320 PF00266 Aminotransferase class-V E4O04_07325 PF13173 AAA domain E4O04_07325 PF13635 Domain of unknown function (DUF4143) E4O04_07340 PF00005 ABC transporter E4O04_07340 PF14524 Wzt C-terminal domain E4O04_07350 PF02423 Ornithine cyclodeaminase/mu-crystallin family E4O04_07360 PF00535 Glycosyl transferase family 2 E4O04_07370 PF05523 WxcM-like, C-terminal E4O04_07385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4O04_07400 PF00535 Glycosyl transferase family 2 E4O04_07400 PF01501 Glycosyl transferase family 8 E4O04_07405 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) E4O04_07415 PF00535 Glycosyl transferase family 2 E4O04_07425 PF02096 60Kd inner membrane protein E4O04_07435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase E4O04_07440 PF02096 60Kd inner membrane protein E4O04_07440 PF14849 YidC periplasmic domain E4O04_07450 PF13439 Glycosyltransferase Family 4 E4O04_07450 PF00534 Glycosyl transferases group 1 E4O04_07455 PF01370 NAD dependent epimerase/dehydratase family E4O04_07460 PF00483 Nucleotidyl transferase E4O04_07465 PF16363 GDP-mannose 4,6 dehydratase E4O04_07470 PF13393 Histidyl-tRNA synthetase E4O04_07475 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4O04_07475 PF00588 SpoU rRNA Methylase family E4O04_07480 PF00753 Metallo-beta-lactamase superfamily E4O04_07480 PF10996 Beta-Casp domain E4O04_07480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain E4O04_07500 PF00005 ABC transporter E4O04_07500 PF00664 ABC transporter transmembrane region E4O04_07505 PF00664 ABC transporter transmembrane region E4O04_07505 PF00005 ABC transporter E4O04_07510 PF01177 Asp/Glu/Hydantoin racemase E4O04_07515 PF03193 RsgA GTPase E4O04_07515 PF16745 RsgA N-terminal domain E4O04_07520 PF00488 MutS domain V E4O04_07520 PF01713 Smr domain E4O04_07530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4O04_07540 PF00072 Response regulator receiver domain E4O04_07540 PF00486 Transcriptional regulatory protein, C terminal E4O04_07545 PF07495 Y_Y_Y domain E4O04_07545 PF00072 Response regulator receiver domain E4O04_07545 PF12833 Helix-turn-helix domain E4O04_07545 PF00512 His Kinase A (phospho-acceptor) domain E4O04_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_07545 PF07494 Two component regulator propeller E4O04_07555 PF00005 ABC transporter E4O04_07575 PF01973 Protein of unknown function DUF115 E4O04_07580 PF01973 Protein of unknown function DUF115 E4O04_07600 PF01300 Telomere recombination E4O04_07610 PF01668 SmpB protein E4O04_07615 PF10502 Signal peptidase, peptidase S26 E4O04_07620 PF04055 Radical SAM superfamily E4O04_07620 PF06969 HemN C-terminal domain E4O04_07625 PF00672 HAMP domain E4O04_07625 PF01966 HD domain E4O04_07635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4O04_07650 PF07195 Flagellar hook-associated protein 2 C-terminus E4O04_07650 PF02465 Flagellar hook-associated protein 2 N-terminus E4O04_07660 PF00700 Bacterial flagellin C-terminal helical region E4O04_07660 PF00669 Bacterial flagellin N-terminal helical region E4O04_07665 PF00669 Bacterial flagellin N-terminal helical region E4O04_07665 PF00700 Bacterial flagellin C-terminal helical region E4O04_07690 PF01321 Creatinase/Prolidase N-terminal domain E4O04_07690 PF00557 Metallopeptidase family M24 E4O04_07700 PF01709 Transcriptional regulator E4O04_07705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4O04_07705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4O04_07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_07720 PF01627 Hpt domain E4O04_07720 PF02895 Signal transducing histidine kinase, homodimeric domain E4O04_07720 PF01584 CheW-like domain E4O04_07720 PF07194 P2 response regulator binding domain E4O04_07725 PF01584 CheW-like domain E4O04_07735 PF00072 Response regulator receiver domain E4O04_07745 PF02463 RecF/RecN/SMC N terminal domain E4O04_07745 PF06470 SMC proteins Flexible Hinge Domain E4O04_07755 PF13525 Outer membrane lipoprotein E4O04_07785 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_07795 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_07795 PF00072 Response regulator receiver domain E4O04_07800 PF00206 Lyase E4O04_07800 PF10397 Adenylosuccinate lyase C-terminus E4O04_07810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4O04_07810 PF00391 PEP-utilising enzyme, mobile domain E4O04_07810 PF02896 PEP-utilising enzyme, TIM barrel domain E4O04_07825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O04_07825 PF07498 Rho termination factor, N-terminal domain E4O04_07825 PF07497 Rho termination factor, RNA-binding domain E4O04_07830 PF01197 Ribosomal protein L31 E4O04_07840 PF03313 Serine dehydratase alpha chain E4O04_07845 PF01842 ACT domain E4O04_07845 PF03315 Serine dehydratase beta chain E4O04_07855 PF00005 ABC transporter E4O04_07860 PF03239 Iron permease FTR1 family E4O04_07865 PF10634 Fe2+ transport protein E4O04_07880 PF12704 MacB-like periplasmic core domain E4O04_07880 PF02687 FtsX-like permease family E4O04_07885 PF00005 ABC transporter E4O04_07905 PF05681 Fumarate hydratase (Fumerase) E4O04_07910 PF05681 Fumarate hydratase (Fumerase) E4O04_07910 PF05683 Fumarase C-terminus E4O04_07915 PF08218 Citrate lyase ligase C-terminal domain E4O04_07920 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E4O04_07920 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E4O04_07945 PF13277 YmdB-like protein E4O04_07955 PF00348 Polyprenyl synthetase E4O04_07965 PF00533 BRCA1 C Terminus (BRCT) domain E4O04_07965 PF03120 NAD-dependent DNA ligase OB-fold domain E4O04_07965 PF01653 NAD-dependent DNA ligase adenylation domain E4O04_07985 PF03692 Putative zinc- or iron-chelating domain E4O04_08000 PF02618 YceG-like family E4O04_08020 PF01351 Ribonuclease HII E4O04_08025 PF02575 YbaB/EbfC DNA-binding family E4O04_08030 PF13662 Toprim domain E4O04_08030 PF02132 RecR protein E4O04_08035 PF00365 Phosphofructokinase E4O04_08040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_08045 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_08050 PF00528 Binding-protein-dependent transport system inner membrane component E4O04_08050 PF12911 N-terminal TM domain of oligopeptide transport permease C E4O04_08055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_08055 PF00005 ABC transporter E4O04_08060 PF00005 ABC transporter E4O04_08060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4O04_08065 PF10437 Bacterial lipoate protein ligase C-terminus E4O04_08065 PF03099 Biotin/lipoate A/B protein ligase family E4O04_08070 PF04055 Radical SAM superfamily E4O04_08075 PF00919 Uncharacterized protein family UPF0004 E4O04_08075 PF04055 Radical SAM superfamily E4O04_08075 PF01938 TRAM domain E4O04_08110 PF08323 Starch synthase catalytic domain E4O04_08110 PF00534 Glycosyl transferases group 1 E4O04_08125 PF02938 GAD domain E4O04_08125 PF00152 tRNA synthetases class II (D, K and N) E4O04_08125 PF01336 OB-fold nucleic acid binding domain E4O04_08130 PF00579 tRNA synthetases class I (W and Y) E4O04_08135 PF01584 CheW-like domain E4O04_08145 PF01513 ATP-NAD kinase E4O04_08150 PF00005 ABC transporter E4O04_08150 PF12848 ABC transporter E4O04_08155 PF02906 Iron only hydrogenase large subunit, C-terminal domain E4O04_08155 PF02256 Iron hydrogenase small subunit E4O04_08155 PF00037 4Fe-4S binding domain E4O04_08155 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4O04_08160 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_08160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4O04_08165 PF01888 CbiD E4O04_08170 PF00005 ABC transporter E4O04_08185 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O04_08185 PF00440 Bacterial regulatory proteins, tetR family E4O04_08220 PF00881 Nitroreductase family E4O04_08225 PF00293 NUDIX domain E4O04_08275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4O04_08275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4O04_08300 PF02347 Glycine cleavage system P-protein E4O04_08305 PF02347 Glycine cleavage system P-protein E4O04_08310 PF01597 Glycine cleavage H-protein E4O04_08315 PF01571 Aminomethyltransferase folate-binding domain E4O04_08315 PF08669 Glycine cleavage T-protein C-terminal barrel domain E4O04_08320 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_08320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4O04_08330 PF01116 Fructose-bisphosphate aldolase class-II E4O04_08335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O04_08335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O04_08340 PF02447 GntP family permease E4O04_08345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4O04_08345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4O04_08350 PF01418 Helix-turn-helix domain, rpiR family E4O04_08350 PF01380 SIS domain E4O04_08360 PF04223 Citrate lyase, alpha subunit (CitF) E4O04_08365 PF03328 HpcH/HpaI aldolase/citrate lyase family E4O04_08370 PF06857 Malonate decarboxylase delta subunit (MdcD) E4O04_08375 PF01367 5'-3' exonuclease, C-terminal SAM fold E4O04_08375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4O04_08375 PF00476 DNA polymerase family A E4O04_08375 PF01612 3'-5' exonuclease E4O04_08380 PF01121 Dephospho-CoA kinase E4O04_08390 PF08501 Shikimate dehydrogenase substrate binding domain E4O04_08390 PF01488 Shikimate / quinate 5-dehydrogenase E4O04_08390 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4O04_08395 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4O04_08405 PF03793 PASTA domain E4O04_08410 PF02911 Formyl transferase, C-terminal domain E4O04_08410 PF00551 Formyl transferase E4O04_08415 PF01327 Polypeptide deformylase E4O04_08435 PF00005 ABC transporter E4O04_08440 PF02632 BioY family E4O04_08445 PF00664 ABC transporter transmembrane region E4O04_08445 PF00005 ABC transporter E4O04_08450 PF00005 ABC transporter E4O04_08450 PF00664 ABC transporter transmembrane region E4O04_08455 PF08011 PD-(D/E)XK nuclease superfamily E4O04_08455 PF09820 Predicted AAA-ATPase E4O04_08460 PF00270 DEAD/DEAH box helicase E4O04_08460 PF04408 Helicase associated domain (HA2) E4O04_08460 PF00271 Helicase conserved C-terminal domain E4O04_08460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E4O04_08475 PF01029 NusB family E4O04_08480 PF13145 PPIC-type PPIASE domain E4O04_08485 PF01411 tRNA synthetases class II (A) E4O04_08485 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4O04_08490 PF03796 DnaB-like helicase C terminal domain E4O04_08490 PF00772 DnaB-like helicase N terminal domain E4O04_08520 PF00155 Aminotransferase class I and II E4O04_08540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O04_08540 PF05698 Bacterial trigger factor protein (TF) C-terminus E4O04_08540 PF05697 Bacterial trigger factor protein (TF) E4O04_08545 PF00574 Clp protease E4O04_08550 PF10431 C-terminal, D2-small domain, of ClpB protein E4O04_08550 PF06689 ClpX C4-type zinc finger E4O04_08550 PF07724 AAA domain (Cdc48 subfamily) E4O04_08560 PF01281 Ribosomal protein L9, N-terminal domain E4O04_08560 PF03948 Ribosomal protein L9, C-terminal domain E4O04_08565 PF01084 Ribosomal protein S18 E4O04_08570 PF00436 Single-strand binding protein family E4O04_08575 PF01250 Ribosomal protein S6 E4O04_08590 PF01813 ATP synthase subunit D E4O04_08595 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O04_08595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O04_08600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4O04_08600 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4O04_08600 PF16886 ATPsynthase alpha/beta subunit N-term extension E4O04_08605 PF00156 Phosphoribosyl transferase domain E4O04_08610 PF00990 Diguanylate cyclase, GGDEF domain E4O04_08610 PF00360 Phytochrome region E4O04_08610 PF00563 EAL domain E4O04_08610 PF01590 GAF domain E4O04_08615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4O04_08630 PF00005 ABC transporter E4O04_08645 PF07364 Metallopeptidase family M81 E4O04_08645 PF07171 MlrC C-terminus E4O04_08650 PF00300 Histidine phosphatase superfamily (branch 1) E4O04_08675 PF02464 Competence-damaged protein E4O04_08675 PF00994 Probable molybdopterin binding domain E4O04_08685 PF00795 Carbon-nitrogen hydrolase E4O04_08690 PF00216 Bacterial DNA-binding protein E4O04_08695 PF01649 Ribosomal protein S20 E4O04_08705 PF04620 Flagellar filament outer layer protein Flaa E4O04_08715 PF01520 N-acetylmuramoyl-L-alanine amidase E4O04_08720 PF00162 Phosphoglycerate kinase E4O04_08740 PF01171 PP-loop family E4O04_08740 PF00117 Glutamine amidotransferase class-I E4O04_08740 PF00958 GMP synthase C terminal domain E4O04_08755 PF01743 Poly A polymerase head domain E4O04_08755 PF12626 Polymerase A arginine-rich C-terminus E4O04_08755 PF12627 Probable RNA and SrmB- binding site of polymerase A E4O04_08780 PF02837 Glycosyl hydrolases family 2, sugar binding domain E4O04_08780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain E4O04_08780 PF16355 Domain of unknown function (DUF4982) E4O04_08780 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 E4O04_08780 PF00703 Glycosyl hydrolases family 2 E4O04_08785 PF00226 DnaJ domain E4O04_08785 PF01556 DnaJ C terminal domain E4O04_08785 PF00684 DnaJ central domain E4O04_08790 PF00557 Metallopeptidase family M24 E4O04_08795 PF03372 Endonuclease/Exonuclease/phosphatase family E4O04_08805 PF00037 4Fe-4S binding domain E4O04_08815 PF01551 Peptidase family M23 E4O04_08815 PF04225 Opacity-associated protein A LysM-like domain E4O04_08825 PF00912 Transglycosylase E4O04_08825 PF17092 Penicillin-binding protein OB-like domain E4O04_08825 PF00905 Penicillin binding protein transpeptidase domain E4O04_08835 PF00501 AMP-binding enzyme E4O04_08945 PF01555 DNA methylase E4O04_09060 PF02417 Chromate transporter E4O04_09065 PF02417 Chromate transporter E4O04_09080 PF01467 Cytidylyltransferase-like E4O04_09085 PF01926 50S ribosome-binding GTPase E4O04_09085 PF01018 GTP1/OBG E4O04_09090 PF01016 Ribosomal L27 protein E4O04_09100 PF00829 Ribosomal prokaryotic L21 protein E4O04_09105 PF04294 VanW like protein E4O04_09115 PF16363 GDP-mannose 4,6 dehydratase E4O04_09120 PF01880 Desulfoferrodoxin E4O04_09120 PF06397 Desulfoferrodoxin, N-terminal domain E4O04_09155 PF00300 Histidine phosphatase superfamily (branch 1) E4O04_09170 PF00912 Transglycosylase E4O04_09175 PF01209 ubiE/COQ5 methyltransferase family E4O04_09180 PF05598 Transposase domain (DUF772) E4O04_09180 PF01609 Transposase DDE domain E4O04_09230 PF01361 Tautomerase enzyme E4O04_09380 PF13495 Phage integrase, N-terminal SAM-like domain E4O04_09380 PF00589 Phage integrase family E4O04_09405 PF00005 ABC transporter E4O04_09415 PF06463 Molybdenum Cofactor Synthesis C E4O04_09415 PF04055 Radical SAM superfamily E4O04_09455 PF01330 RuvA N terminal domain E4O04_09460 PF02075 Crossover junction endodeoxyribonuclease RuvC E4O04_09465 PF05193 Peptidase M16 inactive domain E4O04_09465 PF00675 Insulinase (Peptidase family M16) E4O04_09465 PF08367 Peptidase M16C associated E4O04_09470 PF00005 ABC transporter E4O04_09470 PF03412 Peptidase C39 family E4O04_09470 PF00664 ABC transporter transmembrane region E4O04_09510 PF04452 RNA methyltransferase E4O04_09515 PF13180 PDZ domain E4O04_09515 PF03572 Peptidase family S41 E4O04_09525 PF00005 ABC transporter E4O04_09525 PF12848 ABC transporter E4O04_09560 PF00232 Glycosyl hydrolase family 1 E4O04_09575 PF00919 Uncharacterized protein family UPF0004 E4O04_09575 PF04055 Radical SAM superfamily E4O04_09590 PF05525 Branched-chain amino acid transport protein E4O04_09600 PF01131 DNA topoisomerase E4O04_09600 PF01751 Toprim domain E4O04_09610 PF02534 Type IV secretory system Conjugative DNA transfer E4O04_09620 PF00437 Type II/IV secretion system protein E4O04_09645 PF03135 CagE, TrbE, VirB family, component of type IV transporter system E4O04_09670 PF03743 Bacterial conjugation TrbI-like protein E4O04_09720 PF00271 Helicase conserved C-terminal domain E4O04_09720 PF00176 SNF2 family N-terminal domain E4O04_09720 PF04434 SWIM zinc finger E4O04_09735 PF04002 RadC-like JAB domain E4O04_09775 PF01555 DNA methylase E4O04_09780 PF00436 Single-strand binding protein family E4O04_09835 PF03144 Elongation factor Tu domain 2 E4O04_09835 PF00679 Elongation factor G C-terminus E4O04_09835 PF14492 Elongation Factor G, domain II E4O04_09835 PF00009 Elongation factor Tu GTP binding domain E4O04_09835 PF06421 GTP-binding protein LepA C-terminus E4O04_09845 PF00037 4Fe-4S binding domain E4O04_09845 PF13187 4Fe-4S dicluster domain E4O04_09845 PF04060 Putative Fe-S cluster E4O04_09850 PF07650 KH domain E4O04_09850 PF01926 50S ribosome-binding GTPase E4O04_09855 PF01808 AICARFT/IMPCHase bienzyme E4O04_09855 PF02142 MGS-like domain E4O04_09860 PF00551 Formyl transferase E4O04_09865 PF07516 SecA Wing and Scaffold domain E4O04_09865 PF01043 SecA preprotein cross-linking domain E4O04_09865 PF02810 SEC-C motif E4O04_09865 PF07517 SecA DEAD-like domain E4O04_09870 PF00392 Bacterial regulatory proteins, gntR family E4O04_09875 PF00005 ABC transporter E4O04_09885 PF01648 4'-phosphopantetheinyl transferase superfamily E4O04_09895 PF02457 DisA bacterial checkpoint controller nucleotide-binding E4O04_09900 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4O04_09900 PF02779 Transketolase, pyrimidine binding domain E4O04_09900 PF02780 Transketolase, C-terminal domain E4O04_09915 PF02629 CoA binding domain E4O04_09915 PF06971 Putative DNA-binding protein N-terminus E4O04_09920 PF10672 S-adenosylmethionine-dependent methyltransferase E4O04_09925 PF17864 RuvB AAA lid domain E4O04_09925 PF05491 RuvB C-terminal winged helix domain E4O04_09925 PF05496 Holliday junction DNA helicase RuvB P-loop domain E4O04_09930 PF00465 Iron-containing alcohol dehydrogenase E4O04_09935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O04_09935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O04_09950 PF13186 Iron-sulfur cluster-binding domain E4O04_09965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O04_09985 PF03484 tRNA synthetase B5 domain E4O04_09985 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4O04_10005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4O04_10025 PF00163 Ribosomal protein S4/S9 N-terminal domain E4O04_10025 PF01479 S4 domain E4O04_10055 PF02653 Branched-chain amino acid transport system / permease component E4O04_10060 PF02653 Branched-chain amino acid transport system / permease component E4O04_10070 PF02608 ABC transporter substrate-binding protein PnrA-like E4O04_10075 PF12706 Beta-lactamase superfamily domain E4O04_10075 PF00753 Metallo-beta-lactamase superfamily E4O04_10090 PF00009 Elongation factor Tu GTP binding domain E4O04_10090 PF03144 Elongation factor Tu domain 2 E4O04_10090 PF09105 Elongation factor SelB, winged helix E4O04_10090 PF09106 Elongation factor SelB, winged helix E4O04_10090 PF09107 Elongation factor SelB, winged helix E4O04_10095 PF02690 Na+/Pi-cotransporter E4O04_10100 PF13180 PDZ domain E4O04_10100 PF17820 PDZ domain E4O04_10110 PF01728 FtsJ-like methyltransferase E4O04_10115 PF02954 Bacterial regulatory protein, Fis family E4O04_10115 PF00072 Response regulator receiver domain E4O04_10115 PF00158 Sigma-54 interaction domain E4O04_10120 PF00512 His Kinase A (phospho-acceptor) domain E4O04_10120 PF00989 PAS fold E4O04_10120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_10125 PF09115 DNA polymerase III, delta subunit, C terminal E4O04_10130 PF02674 Colicin V production protein E4O04_10135 PF04101 Glycosyltransferase family 28 C-terminal domain E4O04_10135 PF03033 Glycosyltransferase family 28 N-terminal domain E4O04_10185 PF04773 FecR protein E4O04_10190 PF00672 HAMP domain E4O04_10190 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_10210 PF06733 DEAD_2 E4O04_10210 PF13307 Helicase C-terminal domain E4O04_10225 PF10415 Fumarase C C-terminus E4O04_10225 PF00206 Lyase E4O04_10230 PF01078 Magnesium chelatase, subunit ChlI E4O04_10230 PF13335 Magnesium chelatase, subunit ChlI C-terminal E4O04_10240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4O04_10240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4O04_10240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4O04_10240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4O04_10245 PF00929 Exonuclease E4O04_10250 PF01432 Peptidase family M3 E4O04_10250 PF08439 Oligopeptidase F E4O04_10265 PF01593 Flavin containing amine oxidoreductase E4O04_10270 PF00440 Bacterial regulatory proteins, tetR family E4O04_10295 PF03606 C4-dicarboxylate anaerobic carrier E4O04_10305 PF07687 Peptidase dimerisation domain E4O04_10305 PF01546 Peptidase family M20/M25/M40 E4O04_10440 PF00691 OmpA family E4O04_10445 PF01026 TatD related DNase E4O04_10455 PF03330 Lytic transglycolase E4O04_10455 PF03330 Lytic transglycolase E4O04_10465 PF00483 Nucleotidyl transferase E4O04_10470 PF07724 AAA domain (Cdc48 subfamily) E4O04_10470 PF17871 AAA lid domain E4O04_10470 PF02861 Clp amino terminal domain, pathogenicity island component E4O04_10470 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_10470 PF10431 C-terminal, D2-small domain, of ClpB protein E4O04_10475 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain E4O04_10480 PF02151 UvrB/uvrC motif E4O04_10490 PF00005 ABC transporter E4O04_10495 PF02687 FtsX-like permease family E4O04_10495 PF12704 MacB-like periplasmic core domain E4O04_10505 PF00448 SRP54-type protein, GTPase domain E4O04_10505 PF02881 SRP54-type protein, helical bundle domain E4O04_10520 PF03462 PCRF domain E4O04_10520 PF00472 RF-1 domain E4O04_10535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_10555 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_10575 PF00266 Aminotransferase class-V E4O04_10620 PF02421 Ferrous iron transport protein B E4O04_10620 PF07670 Nucleoside recognition E4O04_10620 PF17910 FeoB cytosolic helical domain E4O04_10620 PF07664 Ferrous iron transport protein B C terminus E4O04_10620 PF04023 FeoA domain E4O04_10625 PF04023 FeoA domain E4O04_10635 PF00005 ABC transporter E4O04_10640 PF00005 ABC transporter E4O04_10645 PF08011 PD-(D/E)XK nuclease superfamily E4O04_10645 PF09820 Predicted AAA-ATPase E4O04_10650 PF02609 Exonuclease VII small subunit E4O04_10655 PF01119 DNA mismatch repair protein, C-terminal domain E4O04_10655 PF08676 MutL C terminal dimerisation domain E4O04_10665 PF01042 Endoribonuclease L-PSP E4O04_10690 PF04055 Radical SAM superfamily E4O04_10695 PF00563 EAL domain E4O04_10695 PF00990 Diguanylate cyclase, GGDEF domain E4O04_10695 PF03707 Bacterial signalling protein N terminal repeat E4O04_10715 PF02954 Bacterial regulatory protein, Fis family E4O04_10715 PF00072 Response regulator receiver domain E4O04_10715 PF00158 Sigma-54 interaction domain E4O04_10720 PF00575 S1 RNA binding domain E4O04_10735 PF00588 SpoU rRNA Methylase family E4O04_10740 PF00696 Amino acid kinase family E4O04_10745 PF00684 DnaJ central domain E4O04_10745 PF00226 DnaJ domain E4O04_10745 PF01556 DnaJ C terminal domain E4O04_10750 PF01176 Translation initiation factor 1A / IF-1 E4O04_10755 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4O04_10760 PF00448 SRP54-type protein, GTPase domain E4O04_10760 PF02881 SRP54-type protein, helical bundle domain E4O04_10760 PF02978 Signal peptide binding domain E4O04_10765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4O04_10765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4O04_10770 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4O04_10775 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4O04_10785 PF00144 Beta-lactamase E4O04_10790 PF07075 Protein of unknown function (DUF1343) E4O04_10835 PF01979 Amidohydrolase family E4O04_10845 PF00270 DEAD/DEAH box helicase E4O04_10845 PF00271 Helicase conserved C-terminal domain E4O04_10865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E4O04_10885 PF00005 ABC transporter E4O04_10885 PF13732 Domain of unknown function (DUF4162) E4O04_10890 PF00672 HAMP domain E4O04_10890 PF07228 Stage II sporulation protein E (SpoIIE) E4O04_10900 PF03687 Uncharacterised protein family (UPF0164) E4O04_10905 PF00521 DNA gyrase/topoisomerase IV, subunit A E4O04_10910 PF00005 ABC transporter E4O04_10920 PF09338 Glycine/sarcosine/betaine reductase component B subunits E4O04_10925 PF02677 Epoxyqueuosine reductase QueH E4O04_10935 PF02617 ATP-dependent Clp protease adaptor protein ClpS E4O04_10940 PF10431 C-terminal, D2-small domain, of ClpB protein E4O04_10940 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_10940 PF07724 AAA domain (Cdc48 subfamily) E4O04_10940 PF17871 AAA lid domain E4O04_10940 PF02861 Clp amino terminal domain, pathogenicity island component E4O04_10945 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E4O04_10970 PF01891 Cobalt uptake substrate-specific transmembrane region E4O04_10975 PF00005 ABC transporter E4O04_11010 PF00326 Prolyl oligopeptidase family E4O04_11010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4O04_11015 PF08011 PD-(D/E)XK nuclease superfamily E4O04_11015 PF09820 Predicted AAA-ATPase E4O04_11020 PF00905 Penicillin binding protein transpeptidase domain E4O04_11020 PF06832 Penicillin-Binding Protein C-terminus Family E4O04_11020 PF00912 Transglycosylase E4O04_11025 PF03313 Serine dehydratase alpha chain E4O04_11030 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_11050 PF01476 LysM domain E4O04_11050 PF01464 Transglycosylase SLT domain E4O04_11060 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E4O04_11065 PF05164 Cell division protein ZapA E4O04_11075 PF00453 Ribosomal protein L20 E4O04_11080 PF01632 Ribosomal protein L35 E4O04_11085 PF00707 Translation initiation factor IF-3, C-terminal domain E4O04_11085 PF05198 Translation initiation factor IF-3, N-terminal domain E4O04_11125 PF00005 ABC transporter E4O04_11135 PF08011 PD-(D/E)XK nuclease superfamily E4O04_11135 PF09820 Predicted AAA-ATPase E4O04_11140 PF13302 Acetyltransferase (GNAT) domain E4O04_11145 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E4O04_11145 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E4O04_11145 PF01189 16S rRNA methyltransferase RsmB/F E4O04_11150 PF04298 Putative neutral zinc metallopeptidase E4O04_11170 PF08241 Methyltransferase domain E4O04_11180 PF01758 Sodium Bile acid symporter family E4O04_11195 PF03773 Predicted permease E4O04_11200 PF01022 Bacterial regulatory protein, arsR family E4O04_11230 PF00654 Voltage gated chloride channel E4O04_11235 PF01926 50S ribosome-binding GTPase E4O04_11235 PF12631 MnmE helical domain E4O04_11235 PF10396 GTP-binding protein TrmE N-terminus E4O04_11240 PF01569 PAP2 superfamily E4O04_11250 PF14353 CpXC protein E4O04_11265 PF00501 AMP-binding enzyme E4O04_11270 PF17762 HTH domain found in ParB protein E4O04_11270 PF02195 ParB-like nuclease domain E4O04_11280 PF01551 Peptidase family M23 E4O04_11285 PF01368 DHH family E4O04_11285 PF02272 DHHA1 domain E4O04_11285 PF17768 RecJ OB domain E4O04_11285 PF10141 Single-strand DNA-specific exonuclease, C terminal domain E4O04_11290 PF02885 Glycosyl transferase family, helical bundle domain E4O04_11290 PF00591 Glycosyl transferase family, a/b domain E4O04_11290 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E4O04_11305 PF00155 Aminotransferase class I and II E4O04_11310 PF00849 RNA pseudouridylate synthase E4O04_11310 PF01479 S4 domain E4O04_11320 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4O04_11320 PF10371 Domain of unknown function E4O04_11320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4O04_11320 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4O04_11320 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4O04_11325 PF01177 Asp/Glu/Hydantoin racemase E4O04_11330 PF01053 Cys/Met metabolism PLP-dependent enzyme E4O04_11345 PF03553 Na+/H+ antiporter family E4O04_11355 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_11355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4O04_11370 PF01784 NIF3 (NGG1p interacting factor 3) E4O04_11375 PF01820 D-ala D-ala ligase N-terminus E4O04_11375 PF07478 D-ala D-ala ligase C-terminus E4O04_11380 PF10509 Galactokinase galactose-binding signature E4O04_11380 PF08544 GHMP kinases C terminal E4O04_11380 PF00288 GHMP kinases N terminal domain E4O04_11400 PF13847 Methyltransferase domain E4O04_11405 PF02653 Branched-chain amino acid transport system / permease component E4O04_11410 PF00005 ABC transporter E4O04_11415 PF13407 Periplasmic binding protein domain E4O04_11415 PF18610 Periplasmic binding protein domain E4O04_11425 PF10502 Signal peptidase, peptidase S26 E4O04_11435 PF03129 Anticodon binding domain E4O04_11435 PF04073 Aminoacyl-tRNA editing domain E4O04_11435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O04_11455 PF01297 Zinc-uptake complex component A periplasmic E4O04_11465 PF07687 Peptidase dimerisation domain E4O04_11465 PF01546 Peptidase family M20/M25/M40 E4O04_11480 PF00005 ABC transporter E4O04_11485 PF01032 FecCD transport family E4O04_11495 PF05034 Methylaspartate ammonia-lyase N-terminus E4O04_11495 PF07476 Methylaspartate ammonia-lyase C-terminus E4O04_11500 PF06368 Methylaspartate mutase E chain (MutE) E4O04_11510 PF03932 CutC family E4O04_11520 PF00986 DNA gyrase B subunit, carboxyl terminus E4O04_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4O04_11520 PF01751 Toprim domain E4O04_11520 PF00204 DNA gyrase B E4O04_11525 PF00899 ThiF family E4O04_11530 PF00953 Glycosyl transferase family 4 E4O04_11540 PF00860 Permease family E4O04_11560 PF00665 Integrase core domain E4O04_11560 PF13333 Integrase core domain E4O04_11560 PF13276 HTH-like domain E4O04_11570 PF09820 Predicted AAA-ATPase E4O04_11570 PF08011 PD-(D/E)XK nuclease superfamily E4O04_11575 PF03819 MazG nucleotide pyrophosphohydrolase domain E4O04_11580 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4O04_11580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4O04_11585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4O04_11585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O04_11585 PF03129 Anticodon binding domain E4O04_11585 PF02824 TGS domain E4O04_11595 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4O04_11595 PF02542 YgbB family E4O04_11600 PF02542 YgbB family E4O04_11610 PF13419 Haloacid dehalogenase-like hydrolase E4O04_11620 PF00924 Mechanosensitive ion channel E4O04_11635 PF10509 Galactokinase galactose-binding signature E4O04_11635 PF08544 GHMP kinases C terminal E4O04_11640 PF00795 Carbon-nitrogen hydrolase E4O04_11645 PF00595 PDZ domain E4O04_11650 PF01312 FlhB HrpN YscU SpaS Family E4O04_11655 PF00072 Response regulator receiver domain E4O04_11660 PF02021 Uncharacterised protein family UPF0102 E4O04_11675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4O04_11675 PF02403 Seryl-tRNA synthetase N-terminal domain E4O04_11695 PF01590 GAF domain E4O04_11695 PF00158 Sigma-54 interaction domain E4O04_11700 PF01168 Alanine racemase, N-terminal domain E4O04_11720 PF09820 Predicted AAA-ATPase E4O04_11720 PF08011 PD-(D/E)XK nuclease superfamily E4O04_11725 PF03006 Haemolysin-III related E4O04_11730 PF01551 Peptidase family M23 E4O04_11730 PF10145 Phage-related minor tail protein E4O04_11730 PF01464 Transglycosylase SLT domain E4O04_11740 PF08281 Sigma-70, region 4 E4O04_11740 PF04542 Sigma-70 region 2 E4O04_11755 PF00924 Mechanosensitive ion channel E4O04_11760 PF00072 Response regulator receiver domain E4O04_11760 PF00196 Bacterial regulatory proteins, luxR family E4O04_11770 PF07685 CobB/CobQ-like glutamine amidotransferase domain E4O04_11780 PF05598 Transposase domain (DUF772) E4O04_11780 PF01609 Transposase DDE domain E4O04_11800 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_11800 PF00672 HAMP domain E4O04_11805 PF07724 AAA domain (Cdc48 subfamily) E4O04_11805 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_11805 PF10431 C-terminal, D2-small domain, of ClpB protein E4O04_11805 PF02861 Clp amino terminal domain, pathogenicity island component E4O04_11805 PF17871 AAA lid domain E4O04_11810 PF03806 AbgT putative transporter family E4O04_11840 PF13361 UvrD-like helicase C-terminal domain E4O04_11840 PF00580 UvrD/REP helicase N-terminal domain E4O04_11845 PF00664 ABC transporter transmembrane region E4O04_11845 PF00005 ABC transporter E4O04_11850 PF00664 ABC transporter transmembrane region E4O04_11850 PF00005 ABC transporter E4O04_11855 PF00375 Sodium:dicarboxylate symporter family E4O04_11860 PF02073 Thermophilic metalloprotease (M29) E4O04_11865 PF08264 Anticodon-binding domain of tRNA E4O04_11865 PF00133 tRNA synthetases class I (I, L, M and V) E4O04_11865 PF09334 tRNA synthetases class I (M) E4O04_11865 PF13603 Leucyl-tRNA synthetase, Domain 2 E4O04_11875 PF17820 PDZ domain E4O04_11875 PF02163 Peptidase family M50 E4O04_11880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4O04_11880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4O04_11880 PF13288 DXP reductoisomerase C-terminal domain E4O04_11890 PF01255 Putative undecaprenyl diphosphate synthase E4O04_11895 PF01765 Ribosome recycling factor E4O04_11900 PF00889 Elongation factor TS E4O04_11905 PF00318 Ribosomal protein S2 E4O04_11910 PF02545 Maf-like protein E4O04_11930 PF07196 Flagellin hook IN motif E4O04_11930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O04_11935 PF07196 Flagellin hook IN motif E4O04_11935 PF00669 Bacterial flagellin N-terminal helical region E4O04_11935 PF00700 Bacterial flagellin C-terminal helical region E4O04_11940 PF02623 FliW protein E4O04_11945 PF02599 Global regulator protein family E4O04_11955 PF01032 FecCD transport family E4O04_11965 PF02733 Dak1 domain E4O04_11965 PF02734 DAK2 domain E4O04_11970 PF02733 Dak1 domain E4O04_11985 PF07969 Amidohydrolase family E4O04_11990 PF03553 Na+/H+ antiporter family E4O04_12000 PF04073 Aminoacyl-tRNA editing domain E4O04_12010 PF04205 FMN-binding domain E4O04_12010 PF12801 4Fe-4S binding domain E4O04_12015 PF08534 Redoxin E4O04_12020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4O04_12025 PF05175 Methyltransferase small domain E4O04_12040 PF00005 ABC transporter E4O04_12055 PF07730 Histidine kinase E4O04_12065 PF02654 Cobalamin-5-phosphate synthase E4O04_12075 PF07478 D-ala D-ala ligase C-terminus E4O04_12075 PF01820 D-ala D-ala ligase N-terminus E4O04_12085 PF02446 4-alpha-glucanotransferase E4O04_12105 PF01609 Transposase DDE domain E4O04_12105 PF05598 Transposase domain (DUF772) E4O04_12110 PF00672 HAMP domain E4O04_12110 PF02743 Cache domain E4O04_12110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_12115 PF00679 Elongation factor G C-terminus E4O04_12115 PF14492 Elongation Factor G, domain II E4O04_12115 PF03764 Elongation factor G, domain IV E4O04_12115 PF00009 Elongation factor Tu GTP binding domain E4O04_12115 PF03144 Elongation factor Tu domain 2 E4O04_12125 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_12130 PF03781 Sulfatase-modifying factor enzyme 1 E4O04_12150 PF13193 AMP-binding enzyme C-terminal domain E4O04_12150 PF00501 AMP-binding enzyme E4O04_12155 PF00877 NlpC/P60 family E4O04_12165 PF01963 TraB family E4O04_12170 PF01170 Putative RNA methylase family UPF0020 E4O04_12170 PF02926 THUMP domain E4O04_12175 PF03979 Sigma-70 factor, region 1.1 E4O04_12175 PF00140 Sigma-70 factor, region 1.2 E4O04_12175 PF04542 Sigma-70 region 2 E4O04_12175 PF04539 Sigma-70 region 3 E4O04_12175 PF04545 Sigma-70, region 4 E4O04_12180 PF00166 Chaperonin 10 Kd subunit E4O04_12200 PF00871 Acetokinase family E4O04_12205 PF00211 Adenylate and Guanylate cyclase catalytic domain E4O04_12210 PF01554 MatE E4O04_12215 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) E4O04_12215 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 E4O04_12220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4O04_12220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4O04_12225 PF00005 ABC transporter E4O04_12240 PF07687 Peptidase dimerisation domain E4O04_12240 PF01546 Peptidase family M20/M25/M40 E4O04_12245 PF09820 Predicted AAA-ATPase E4O04_12245 PF08011 PD-(D/E)XK nuclease superfamily E4O04_12250 PF00580 UvrD/REP helicase N-terminal domain E4O04_12250 PF13361 UvrD-like helicase C-terminal domain E4O04_12295 PF08011 PD-(D/E)XK nuclease superfamily E4O04_12295 PF09820 Predicted AAA-ATPase E4O04_12310 PF01245 Ribosomal protein L19 E4O04_12315 PF01746 tRNA (Guanine-1)-methyltransferase E4O04_12320 PF01782 RimM N-terminal domain E4O04_12330 PF00886 Ribosomal protein S16 E4O04_12335 PF02277 Phosphoribosyltransferase E4O04_12340 PF00005 ABC transporter E4O04_12345 PF09383 NIL domain E4O04_12345 PF00005 ABC transporter E4O04_12360 PF01479 S4 domain E4O04_12360 PF00849 RNA pseudouridylate synthase E4O04_12365 PF04079 Segregation and condensation complex subunit ScpB E4O04_12370 PF02616 Segregation and condensation protein ScpA E4O04_12375 PF00154 recA bacterial DNA recombination protein E4O04_12380 PF02872 5'-nucleotidase, C-terminal domain E4O04_12380 PF00149 Calcineurin-like phosphoesterase E4O04_12390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4O04_12390 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_12410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4O04_12410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4O04_12410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4O04_12410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4O04_12415 PF02308 MgtC family E4O04_12435 PF00579 tRNA synthetases class I (W and Y) E4O04_12440 PF00849 RNA pseudouridylate synthase E4O04_12440 PF01479 S4 domain E4O04_12460 PF00596 Class II Aldolase and Adducin N-terminal domain E4O04_12465 PF00196 Bacterial regulatory proteins, luxR family E4O04_12465 PF00072 Response regulator receiver domain E4O04_12475 PF00380 Ribosomal protein S9/S16 E4O04_12480 PF00572 Ribosomal protein L13 E4O04_12495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_12495 PF00672 HAMP domain E4O04_12495 PF02743 Cache domain E4O04_12500 PF02743 Cache domain E4O04_12500 PF00672 HAMP domain E4O04_12500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_12500 PF02743 Cache domain E4O04_12500 PF00672 HAMP domain E4O04_12500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_12515 PF16314 Domain of unknown function (DUF4954) E4O04_12525 PF00391 PEP-utilising enzyme, mobile domain E4O04_12525 PF02896 PEP-utilising enzyme, TIM barrel domain E4O04_12540 PF13519 von Willebrand factor type A domain E4O04_12550 PF00581 Rhodanese-like domain E4O04_12550 PF17773 UPF0176 acylphosphatase like domain E4O04_12555 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4O04_12555 PF13237 4Fe-4S dicluster domain E4O04_12555 PF13375 RnfC Barrel sandwich hybrid domain E4O04_12555 PF10531 SLBB domain E4O04_12560 PF03116 NQR2, RnfD, RnfE family E4O04_12565 PF04205 FMN-binding domain E4O04_12570 PF02508 Rnf-Nqr subunit, membrane protein E4O04_12575 PF02508 Rnf-Nqr subunit, membrane protein E4O04_12585 PF02127 Aminopeptidase I zinc metalloprotease (M18) E4O04_12590 PF01134 Glucose inhibited division protein A E4O04_12590 PF13932 GidA associated domain E4O04_12595 PF01636 Phosphotransferase enzyme family E4O04_12600 PF01008 Initiation factor 2 subunit family E4O04_12610 PF00596 Class II Aldolase and Adducin N-terminal domain E4O04_12615 PF01053 Cys/Met metabolism PLP-dependent enzyme E4O04_12620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4O04_12620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4O04_12625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O04_12625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O04_12630 PF01225 Mur ligase family, catalytic domain E4O04_12630 PF08245 Mur ligase middle domain E4O04_12630 PF02875 Mur ligase family, glutamate ligase domain E4O04_12640 PF07977 FabA-like domain E4O04_12645 PF08361 MAATS-type transcriptional repressor, C-terminal region E4O04_12645 PF00440 Bacterial regulatory proteins, tetR family E4O04_12660 PF00005 ABC transporter E4O04_12665 PF00664 ABC transporter transmembrane region E4O04_12665 PF00005 ABC transporter E4O04_12670 PF00664 ABC transporter transmembrane region E4O04_12670 PF00005 ABC transporter E4O04_12680 PF01546 Peptidase family M20/M25/M40 E4O04_12680 PF07687 Peptidase dimerisation domain E4O04_12685 PF03606 C4-dicarboxylate anaerobic carrier E4O04_12690 PF01638 HxlR-like helix-turn-helix E4O04_12695 PF01613 Flavin reductase like domain E4O04_12705 PF02678 Pirin E4O04_12705 PF05726 Pirin C-terminal cupin domain E4O04_12725 PF00664 ABC transporter transmembrane region E4O04_12725 PF00005 ABC transporter E4O04_12730 PF03412 Peptidase C39 family E4O04_12730 PF00005 ABC transporter E4O04_12730 PF00664 ABC transporter transmembrane region E4O04_12745 PF02203 Tar ligand binding domain homologue E4O04_12745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4O04_12745 PF00672 HAMP domain E4O04_12765 PF11855 Protein of unknown function (DUF3375) E4O04_12770 PF01022 Bacterial regulatory protein, arsR family E4O04_12785 PF00005 ABC transporter E4O04_12825 PF06803 Protein of unknown function (DUF1232) E4O04_12855 PF00271 Helicase conserved C-terminal domain E4O04_12855 PF00176 SNF2 family N-terminal domain E4O04_12875 PF02796 Helix-turn-helix domain of resolvase E4O04_12875 PF00239 Resolvase, N terminal domain E4O04_12890 PF01139 tRNA-splicing ligase RtcB E4O04_12895 PF13091 PLD-like domain E4O04_12895 PF13396 Phospholipase_D-nuclease N-terminal E4O04_12915 PF13460 NAD(P)H-binding E4O04_12920 PF02082 Transcriptional regulator E4O04_12935 PF03009 Glycerophosphoryl diester phosphodiesterase family E4O04_12945 PF00708 Acylphosphatase E4O04_12965 PF01196 Ribosomal protein L17 E4O04_12970 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4O04_12970 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4O04_12970 PF01000 RNA polymerase Rpb3/RpoA insert domain E4O04_12975 PF00411 Ribosomal protein S11 E4O04_12980 PF00416 Ribosomal protein S13/S18 E4O04_12985 PF00444 Ribosomal protein L36 E4O04_12990 PF00344 SecY translocase E4O04_12995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4O04_13000 PF00327 Ribosomal protein L30p/L7e E4O04_13005 PF03719 Ribosomal protein S5, C-terminal domain E4O04_13005 PF00333 Ribosomal protein S5, N-terminal domain E4O04_13010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4O04_13015 PF00347 Ribosomal protein L6 E4O04_13020 PF00410 Ribosomal protein S8 E4O04_13025 PF00253 Ribosomal protein S14p/S29e E4O04_13030 PF00673 ribosomal L5P family C-terminus E4O04_13030 PF00281 Ribosomal protein L5 E4O04_13035 PF00467 KOW motif E4O04_13035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4O04_13040 PF00238 Ribosomal protein L14p/L23e E4O04_13045 PF00366 Ribosomal protein S17 E4O04_13050 PF00831 Ribosomal L29 protein E4O04_13055 PF00252 Ribosomal protein L16p/L10e E4O04_13060 PF00189 Ribosomal protein S3, C-terminal domain E4O04_13060 PF07650 KH domain E4O04_13065 PF00237 Ribosomal protein L22p/L17e E4O04_13070 PF00203 Ribosomal protein S19 E4O04_13075 PF00181 Ribosomal Proteins L2, RNA binding domain E4O04_13075 PF03947 Ribosomal Proteins L2, C-terminal domain E4O04_13080 PF00276 Ribosomal protein L23 E4O04_13085 PF00573 Ribosomal protein L4/L1 family E4O04_13090 PF00297 Ribosomal protein L3 E4O04_13095 PF00338 Ribosomal protein S10p/S20e E4O04_13100 PF03143 Elongation factor Tu C-terminal domain E4O04_13100 PF03144 Elongation factor Tu domain 2 E4O04_13100 PF00009 Elongation factor Tu GTP binding domain E4O04_13110 PF00082 Subtilase family E4O04_13110 PF05922 Peptidase inhibitor I9 E4O04_13130 PF01032 FecCD transport family E4O04_13135 PF00005 ABC transporter E4O04_13140 PF03553 Na+/H+ antiporter family E4O04_13145 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4O04_13150 PF18766 SWI2/SNF2 ATPase E4O04_13150 PF11867 Domain of unknown function (DUF3387) E4O04_13150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E4O04_13170 PF02899 Phage integrase, N-terminal SAM-like domain E4O04_13170 PF00589 Phage integrase family E4O04_13175 PF01420 Type I restriction modification DNA specificity domain E4O04_13195 PF02384 N-6 DNA Methylase E4O04_13205 PF00085 Thioredoxin E4O04_13210 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4O04_13245 PF00111 2Fe-2S iron-sulfur cluster binding domain E4O04_13245 PF01799 [2Fe-2S] binding domain E4O04_13255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4O04_13305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4O04_13310 PF00664 ABC transporter transmembrane region E4O04_13310 PF00005 ABC transporter E4O04_13310 PF03412 Peptidase C39 family E4O04_13350 PF02719 Polysaccharide biosynthesis protein E4O04_13370 PF01641 SelR domain E4O04_13370 PF01625 Peptide methionine sulfoxide reductase E4O04_13390 PF01145 SPFH domain / Band 7 family E4O04_13395 PF01145 SPFH domain / Band 7 family E4O04_13415 PF00005 ABC transporter E4O04_13420 PF08543 Phosphomethylpyrimidine kinase E4O04_13425 PF00664 ABC transporter transmembrane region E4O04_13425 PF00005 ABC transporter E4O04_13435 PF01636 Phosphotransferase enzyme family E4O04_13445 PF00731 AIR carboxylase E4O04_13450 PF01259 SAICAR synthetase E4O04_13455 PF00106 short chain dehydrogenase E4O04_13460 PF00436 Single-strand binding protein family E4O04_13465 PF02699 Preprotein translocase subunit E4O04_13470 PF02355 Protein export membrane protein E4O04_13475 PF02355 Protein export membrane protein E4O04_13480 PF00266 Aminotransferase class-V E4O04_13490 PF01206 Sulfurtransferase TusA E4O04_13520 PF01381 Helix-turn-helix E4O04_13545 PF00004 ATPase family associated with various cellular activities (AAA) E4O04_13545 PF05362 Lon protease (S16) C-terminal proteolytic domain E4O04_13545 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4O04_13555 PF01458 Uncharacterized protein family (UPF0051) E4O04_13560 PF00005 ABC transporter E4O04_13590 PF03390 2-hydroxycarboxylate transporter family E4O04_13625 PF00588 SpoU rRNA Methylase family E4O04_13625 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4O04_13630 PF13419 Haloacid dehalogenase-like hydrolase E4O04_13640 PF00571 CBS domain E4O04_13640 PF01769 Divalent cation transporter E4O04_13640 PF03448 MgtE intracellular N domain E4O04_13650 PF04452 RNA methyltransferase E4O04_13670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4O04_13670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4O04_13675 PF14572 Phosphoribosyl synthetase-associated domain E4O04_13675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4O04_13680 PF00072 Response regulator receiver domain E4O04_13680 PF00990 Diguanylate cyclase, GGDEF domain E4O04_13685 PF00563 EAL domain E4O04_13685 PF00990 Diguanylate cyclase, GGDEF domain E4O04_13690 PF03193 RsgA GTPase E4O04_13700 PF01026 TatD related DNase E4O04_13705 PF01207 Dihydrouridine synthase (Dus) E4O04_13745 PF01420 Type I restriction modification DNA specificity domain E4O04_13750 PF02899 Phage integrase, N-terminal SAM-like domain E4O04_13750 PF00589 Phage integrase family E4O04_13755 PF01420 Type I restriction modification DNA specificity domain E4O04_13760 PF03543 Yersinia/Haemophilus virulence surface antigen E4O04_13760 PF13018 Extended Signal Peptide of Type V secretion system E4O04_13760 PF02661 Fic/DOC family E4O04_13760 PF13332 Hemagglutinin repeat E4O04_13760 PF05860 haemagglutination activity domain E4O04_13765 PF02384 N-6 DNA Methylase E4O04_13770 PF04851 Type III restriction enzyme, res subunit E4O04_13770 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E4O04_13770 PF00271 Helicase conserved C-terminal domain E4O04_13770 PF08463 EcoEI R protein C-terminal E4O04_13790 PF13167 GTP-binding GTPase N-terminal E4O04_13790 PF16360 GTP-binding GTPase Middle Region E4O04_13790 PF01926 50S ribosome-binding GTPase E4O04_13815 PF02423 Ornithine cyclodeaminase/mu-crystallin family E4O04_13820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4O04_13825 PF00813 FliP family E4O04_13835 PF04509 CheC-like family E4O04_13835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4O04_13840 PF02154 Flagellar motor switch protein FliM E4O04_13840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4O04_13845 PF03748 Flagellar basal body-associated protein FliL E4O04_13850 PF00691 OmpA family E4O04_13850 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4O04_13855 PF01618 MotA/TolQ/ExbB proton channel family E4O04_13865 PF07559 Flagellar basal body protein FlaE E4O04_13865 PF00460 Flagella basal body rod protein E4O04_13865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4O04_13870 PF03963 Flagellar hook capping protein - N-terminal region E4O04_13900 PF00221 Aromatic amino acid lyase E4O04_13905 PF02028 BCCT, betaine/carnitine/choline family transporter E4O04_13910 PF13478 XdhC Rossmann domain E4O04_13910 PF02625 XdhC and CoxI family E4O04_13920 PF01799 [2Fe-2S] binding domain E4O04_13920 PF00111 2Fe-2S iron-sulfur cluster binding domain E4O04_13930 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain E4O04_13930 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase E4O04_13935 PF00005 ABC transporter E4O04_13940 PF01032 FecCD transport family E4O04_13965 PF00561 alpha/beta hydrolase fold E4O04_13985 PF00664 ABC transporter transmembrane region E4O04_13985 PF00005 ABC transporter E4O04_13990 PF00664 ABC transporter transmembrane region E4O04_13990 PF00005 ABC transporter E4O04_14005 PF17239 Family of unknown function (DUF5312) E4O04_14015 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4O04_14015 PF14579 Helix-hairpin-helix motif E4O04_14015 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4O04_14015 PF02811 PHP domain