locus-tag class description JO41_00055 IPR035013 YabN, N-terminal JO41_00055 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core JO41_00055 IPR011551 NTP pyrophosphohydrolase MazG JO41_00055 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted JO41_00055 IPR000878 Tetrapyrrole methylase JO41_00055 IPR014777 Tetrapyrrole methylase, subdomain 1 JO41_00055 IPR035996 Tetrapyrrole methylase superfamily JO41_00070 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_00080 IPR015424 Pyridoxal phosphate-dependent transferase JO41_00080 IPR004839 Aminotransferase, class I/classII JO41_00080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_00080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_00080 IPR005861 Histidinol-phosphate aminotransferase family JO41_00080 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site JO41_00105 IPR013471 Ribonuclease Z/BN JO41_00105 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO41_00105 IPR001279 Metallo-beta-lactamase JO41_00115 IPR006860 FecR protein JO41_00115 IPR013783 Immunoglobulin-like fold JO41_00120 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO41_00120 IPR011006 CheY-like superfamily JO41_00120 IPR029787 Nucleotide cyclase JO41_00120 IPR001789 Signal transduction response regulator, receiver domain JO41_00125 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E JO41_00125 IPR018027 Asn/Gln amidotransferase JO41_00125 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit JO41_00125 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic JO41_00125 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 JO41_00125 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 JO41_00125 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site JO41_00125 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain JO41_00125 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like JO41_00130 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit JO41_00130 IPR000120 Amidase JO41_00130 IPR020556 Amidase, conserved site JO41_00130 IPR023631 Amidase signature domain JO41_00130 IPR036928 Amidase signature (AS) superfamily JO41_00140 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_00140 IPR029151 Periplasmic sensor-like domain superfamily JO41_00140 IPR003660 HAMP domain JO41_00140 IPR033479 Double Cache domain 1 JO41_00145 IPR001927 Sodium:galactoside symporter JO41_00145 IPR039672 Lactose permease-like JO41_00145 IPR036259 MFS transporter superfamily JO41_00145 IPR018043 Sodium:galactoside symporter, conserved site JO41_00165 IPR039718 Ribonucleoside-diphosphate reductase large subunit JO41_00165 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal JO41_00165 IPR000788 Ribonucleotide reductase large subunit, C-terminal JO41_00165 IPR013346 Ribonucleotide reductase, class I , alpha subunit JO41_00165 IPR013509 Ribonucleotide reductase large subunit, N-terminal JO41_00165 IPR005144 ATP-cone domain JO41_00170 IPR036161 RPB6/omega subunit-like superfamily JO41_00170 IPR006110 RNA polymerase, subunit omega/K/RPB6 JO41_00195 IPR000307 Ribosomal protein S16 JO41_00195 IPR023803 Ribosomal protein S16 domain superfamily JO41_00200 IPR015946 K homology domain-like, alpha/beta JO41_00200 IPR009019 K homology domain superfamily, prokaryotic type JO41_00200 IPR020627 Uncharacterised protein family UPF0109 JO41_00205 IPR036976 RimM, N-terminal domain superfamily JO41_00205 IPR009000 Translation protein, beta-barrel domain superfamily JO41_00205 IPR002676 RimM, N-terminal JO41_00205 IPR011033 PRC-barrel-like superfamily JO41_00205 IPR011961 16S rRNA processing protein RimM JO41_00210 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO41_00210 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria JO41_00210 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal JO41_00210 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain JO41_00210 IPR029028 Alpha/beta knot methyltransferases JO41_00215 IPR038657 Ribosomal protein L19 superfamily JO41_00215 IPR001857 Ribosomal protein L19 JO41_00215 IPR008991 Translation protein SH3-like domain superfamily JO41_00215 IPR018257 Ribosomal protein L19, conserved site JO41_00235 IPR011335 Restriction endonuclease type II-like JO41_00235 IPR011856 tRNA endonuclease-like domain superfamily JO41_00235 IPR003509 Uncharacterised protein family UPF0102 JO41_00250 IPR015413 Methionyl/Leucyl tRNA synthetase JO41_00250 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_00250 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO41_00250 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO41_00250 IPR025709 Leucyl-tRNA synthetase, editing domain JO41_00250 IPR002302 Leucine-tRNA ligase JO41_00250 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO41_00250 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_00250 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_00260 IPR018527 Rubredoxin, iron-binding site JO41_00260 IPR024935 Rubredoxin domain JO41_00260 IPR024934 Rubredoxin-like domain JO41_00260 IPR024922 Rubredoxin JO41_00275 IPR004681 TRAP transporter large membrane protein DctM JO41_00275 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit JO41_00285 IPR011852 TRAP transporter solute receptor, TAXI family JO41_00295 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_00295 IPR003660 HAMP domain JO41_00295 IPR004090 Chemotaxis methyl-accepting receptor JO41_00295 IPR033479 Double Cache domain 1 JO41_00295 IPR000727 Target SNARE coiled-coil homology domain JO41_00295 IPR029151 Periplasmic sensor-like domain superfamily JO41_00305 IPR004803 tRNA-guanine transglycosylase JO41_00305 IPR036511 Queuine tRNA-ribosyltransferase-like JO41_00305 IPR002616 tRNA-guanine(15) transglycosylase-like JO41_00315 IPR018631 AAA-ATPase-like domain JO41_00315 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_00320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_00320 IPR019614 S-adenosylmethionine-dependent methyltransferase JO41_00320 IPR004114 THUMP domain JO41_00320 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_00320 IPR017244 Ribosomal RNA large subunit methyltransferase K/L JO41_00320 IPR000241 Putative RNA methylase domain JO41_00325 IPR036291 NAD(P)-binding domain superfamily JO41_00325 IPR003781 CoA-binding JO41_00325 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_00325 IPR036390 Winged helix DNA-binding domain superfamily JO41_00325 IPR009718 Rex DNA-binding, C-terminal domain JO41_00325 IPR022876 Redox-sensing transcriptional repressor Rex JO41_00330 IPR016024 Armadillo-type fold JO41_00330 IPR011989 Armadillo-like helical JO41_00335 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase JO41_00335 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain JO41_00335 IPR037523 Vicinal oxygen chelate (VOC) domain JO41_00335 IPR018146 Glyoxalase I, conserved site JO41_00335 IPR004361 Glyoxalase I JO41_00345 IPR001250 Mannose-6-phosphate isomerase, type I JO41_00345 IPR011051 RmlC-like cupin domain superfamily JO41_00345 IPR014710 RmlC-like jelly roll fold JO41_00345 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form JO41_00350 IPR041236 Primosomal protein N, C-terminal domain JO41_00350 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain JO41_00350 IPR001650 Helicase, C-terminal JO41_00350 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00350 IPR011545 DEAD/DEAH box helicase domain JO41_00350 IPR041222 Primosomal protein N', 3' DNA-binding domain JO41_00350 IPR005259 Primosomal protein N' JO41_00350 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily JO41_00350 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_00355 IPR005122 Uracil-DNA glycosylase-like JO41_00355 IPR005273 Uracil-DNA glycosylase family 4 JO41_00355 IPR036895 Uracil-DNA glycosylase-like domain superfamily JO41_00365 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type JO41_00370 IPR001347 Sugar isomerase (SIS) JO41_00370 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ JO41_00370 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein JO41_00370 IPR005486 Glucokinase regulatory protein, conserved site JO41_00385 IPR006059 Bacterial extracellular solute-binding protein JO41_00390 IPR035906 MetI-like superfamily JO41_00390 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_00395 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_00395 IPR035906 MetI-like superfamily JO41_00405 IPR039424 Solute-binding protein family 5 JO41_00405 IPR023765 Solute-binding protein family 5, conserved site JO41_00405 IPR030678 Peptide/nickel binding protein, MppA-type JO41_00405 IPR000914 Solute-binding protein family 5 domain JO41_00410 IPR003804 L-lactate permease JO41_00415 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_00415 IPR009057 Homeobox-like domain superfamily JO41_00415 IPR001647 DNA-binding HTH domain, TetR-type JO41_00430 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT JO41_00430 IPR011540 AbgT, Proteobacteria JO41_00440 IPR006059 Bacterial extracellular solute-binding protein JO41_00475 IPR013848 Methylthiotransferase, N-terminal JO41_00475 IPR020612 Methylthiotransferase, conserved site JO41_00475 IPR005839 Methylthiotransferase JO41_00475 IPR023404 Radical SAM, alpha/beta horseshoe JO41_00475 IPR007197 Radical SAM JO41_00475 IPR006638 Elp3/MiaB/NifB JO41_00475 IPR041582 RimO, TRAM domain JO41_00475 IPR005840 Ribosomal protein S12 methylthiotransferase RimO JO41_00475 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO41_00480 IPR031807 HicB-like antitoxin of toxin-antitoxin system JO41_00480 IPR035069 TTHA1013/TTHA0281-like JO41_00480 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO41_00495 IPR012676 TGS-like JO41_00495 IPR033728 Threonine-tRNA ligase catalytic core domain JO41_00495 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO41_00495 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO41_00495 IPR002320 Threonine-tRNA ligase, class IIa JO41_00495 IPR004095 TGS JO41_00495 IPR012675 Beta-grasp domain superfamily JO41_00495 IPR036621 Anticodon-binding domain superfamily JO41_00495 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO41_00495 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_00495 IPR004154 Anticodon-binding JO41_00500 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain JO41_00500 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC JO41_00500 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily JO41_00505 IPR013534 Starch synthase, catalytic domain JO41_00505 IPR011835 Bacterial/plant glycogen synthase JO41_00505 IPR001296 Glycosyl transferase, family 1 JO41_00510 IPR013154 Alcohol dehydrogenase, N-terminal JO41_00510 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site JO41_00510 IPR020843 Polyketide synthase, enoylreductase domain JO41_00510 IPR036291 NAD(P)-binding domain superfamily JO41_00510 IPR013149 Alcohol dehydrogenase, C-terminal JO41_00510 IPR011032 GroES-like superfamily JO41_00515 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00515 IPR003495 CobW/HypB/UreG, nucleotide-binding domain JO41_00515 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal JO41_00520 IPR004254 AdipoR/Haemolysin-III-related JO41_00520 IPR005744 Hly-III JO41_00525 IPR027491 Ribosomal protein L31 type A JO41_00525 IPR002150 Ribosomal protein L31 JO41_00525 IPR034704 L28p-like JO41_00525 IPR042105 Ribosomal protein L31 superfamily JO41_00530 IPR004665 Transcription termination factor Rho JO41_00530 IPR011129 Cold shock domain JO41_00530 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO41_00530 IPR003593 AAA+ ATPase domain JO41_00530 IPR011113 Rho termination factor, RNA-binding domain JO41_00530 IPR012340 Nucleic acid-binding, OB-fold JO41_00530 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00530 IPR011112 Rho termination factor, N-terminal JO41_00530 IPR041703 Transcription termination factor Rho, ATP binding domain JO41_00545 IPR036526 Carbon-nitrogen hydrolase superfamily JO41_00545 IPR003010 Carbon-nitrogen hydrolase JO41_00545 IPR004563 Apolipoprotein N-acyltransferase JO41_00550 IPR000119 Histone-like DNA-binding protein JO41_00550 IPR020816 Histone-like DNA-binding protein, conserved site JO41_00550 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily JO41_00550 IPR005685 Integration host factor, beta subunit JO41_00555 IPR002583 Ribosomal protein S20 JO41_00555 IPR036510 Ribosomal protein S20 superfamily JO41_00565 IPR016369 Flagellar filament outer layer protein FlaA, Spirochaetes JO41_00565 IPR006714 Flagellar filament outer layer protein FlaA JO41_00575 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain JO41_00580 IPR003806 ATP-grasp fold, PylC-type JO41_00580 IPR011761 ATP-grasp fold JO41_00580 IPR008948 L-Aspartase-like JO41_00580 IPR022761 Fumarate lyase, N-terminal JO41_00580 IPR000362 Fumarate lyase family JO41_00580 IPR009049 Argininosuccinate lyase JO41_00580 IPR024083 Fumarase/histidase, N-terminal JO41_00580 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain JO41_00600 IPR027608 Spirochetes SPASM protein JO41_00600 IPR023885 4Fe4S-binding SPASM domain JO41_00615 IPR001789 Signal transduction response regulator, receiver domain JO41_00615 IPR011006 CheY-like superfamily JO41_00625 IPR036061 CheW-like domain superfamily JO41_00625 IPR002545 CheW-like domain JO41_00625 IPR039315 Chemotaxis protein CheW JO41_00630 IPR036641 HPT domain superfamily JO41_00630 IPR004358 Signal transduction histidine kinase-related protein, C-terminal JO41_00630 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain JO41_00630 IPR036061 CheW-like domain superfamily JO41_00630 IPR035891 CheY-binding domain of CheA JO41_00630 IPR002545 CheW-like domain JO41_00630 IPR004105 Histidine kinase CheA-like, homodimeric domain JO41_00630 IPR003594 Histidine kinase/HSP90-like ATPase JO41_00630 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding JO41_00630 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_00630 IPR005467 Histidine kinase domain JO41_00635 IPR006812 Glycine reductase complex selenoprotein A JO41_00640 IPR006812 Glycine reductase complex selenoprotein A JO41_00645 IPR036249 Thioredoxin-like superfamily JO41_00645 IPR017937 Thioredoxin, conserved site JO41_00645 IPR013766 Thioredoxin domain JO41_00645 IPR005746 Thioredoxin JO41_00650 IPR005982 Thioredoxin reductase JO41_00650 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site JO41_00650 IPR023753 FAD/NAD(P)-binding domain JO41_00650 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_00655 IPR002646 Poly A polymerase, head domain JO41_00655 IPR010206 Poly(A) polymerase I JO41_00655 IPR025866 Polymerase A arginine-rich C-terminal domain JO41_00655 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain JO41_00660 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit JO41_00660 IPR004681 TRAP transporter large membrane protein DctM JO41_00670 IPR031823 TRAP transporter T-component JO41_00670 IPR038537 TatT superfamily JO41_00680 IPR016181 Acyl-CoA N-acyltransferase JO41_00680 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase JO41_00685 IPR006690 Outer membrane protein, OmpA-like, conserved site JO41_00685 IPR036737 OmpA-like domain superfamily JO41_00685 IPR006665 OmpA-like domain JO41_00685 IPR006664 Outer membrane protein, bacterial JO41_00690 IPR024706 Peroxiredoxin, AhpC-type JO41_00690 IPR036249 Thioredoxin-like superfamily JO41_00690 IPR019479 Peroxiredoxin, C-terminal JO41_00690 IPR013766 Thioredoxin domain JO41_00690 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant JO41_00690 IPR017559 Alkyl hydroperoxide reductase subunit C JO41_00695 IPR018392 LysM domain JO41_00695 IPR036779 LysM domain superfamily JO41_00695 IPR003646 SH3-like domain, bacterial-type JO41_00695 IPR000064 Endopeptidase, NLPC/P60 domain JO41_00695 IPR038765 Papain-like cysteine peptidase superfamily JO41_00700 IPR036390 Winged helix DNA-binding domain superfamily JO41_00700 IPR005119 LysR, substrate-binding JO41_00700 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_00700 IPR000847 Transcription regulator HTH, LysR JO41_00705 IPR003834 Cytochrome C biogenesis protein, transmembrane domain JO41_00710 IPR036249 Thioredoxin-like superfamily JO41_00710 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant JO41_00710 IPR023555 Thiol-disulphide oxidoreductase ResA JO41_00710 IPR013766 Thioredoxin domain JO41_00725 IPR001599 Alpha-2-macroglobulin JO41_00725 IPR002890 Macroglobulin domain JO41_00725 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid JO41_00725 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain JO41_00725 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain JO41_00725 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain JO41_00725 IPR021868 Alpha-2-macroglobulin MG3 domain JO41_00725 IPR011625 Alpha-2-macroglobulin, bait region domain JO41_00725 IPR001434 Domain of unknown function DUF11 JO41_00730 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_00730 IPR018631 AAA-ATPase-like domain JO41_00750 IPR001207 Transposase, mutator type JO41_00770 IPR001264 Glycosyl transferase, family 51 JO41_00770 IPR023346 Lysozyme-like domain superfamily JO41_00770 IPR012338 Beta-lactamase/transpeptidase-like JO41_00770 IPR036950 Penicillin binding protein transglycosylase domain JO41_00770 IPR001460 Penicillin-binding protein, transpeptidase JO41_00780 IPR040605 Glycoside hydrolase family 2, domain 5 JO41_00780 IPR006101 Glycoside hydrolase, family 2 JO41_00780 IPR023232 Glycoside hydrolase, family 2, active site JO41_00780 IPR006103 Glycoside hydrolase family 2, catalytic domain JO41_00780 IPR023230 Glycoside hydrolase, family 2, conserved site JO41_00780 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich JO41_00780 IPR006104 Glycosyl hydrolases family 2, sugar binding domain JO41_00780 IPR017853 Glycoside hydrolase superfamily JO41_00780 IPR013783 Immunoglobulin-like fold JO41_00780 IPR008979 Galactose-binding-like domain superfamily JO41_00780 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily JO41_00795 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_00795 IPR035906 MetI-like superfamily JO41_00800 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_00800 IPR035906 MetI-like superfamily JO41_00815 IPR025714 Methyltransferase domain JO41_00815 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_00815 IPR026669 Arsenite methyltransferase-like JO41_00820 IPR038718 SNF2-like, N-terminal domain superfamily JO41_00820 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00820 IPR001650 Helicase, C-terminal JO41_00820 IPR000330 SNF2-related, N-terminal domain JO41_00820 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_00820 IPR022138 Helicase SWF/SNF-related JO41_00835 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_00835 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_00835 IPR006206 Mevalonate/galactokinase JO41_00835 IPR019539 Galactokinase galactose-binding domain JO41_00835 IPR036554 GHMP kinase, C-terminal domain superfamily JO41_00835 IPR000705 Galactokinase JO41_00835 IPR013750 GHMP kinase, C-terminal domain JO41_00850 IPR008995 Molybdate/tungstate binding, C-terminal JO41_00850 IPR015853 ABC transporter, ferric cation import, FbpC JO41_00850 IPR003593 AAA+ ATPase domain JO41_00850 IPR003439 ABC transporter-like JO41_00850 IPR017871 ABC transporter, conserved site JO41_00850 IPR013611 Transport-associated OB, type 2 JO41_00850 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00860 IPR035906 MetI-like superfamily JO41_00860 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_00860 IPR005947 Thiamine ABC transporter, permease protein JO41_00865 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter JO41_00865 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria JO41_00865 IPR006059 Bacterial extracellular solute-binding protein JO41_00875 IPR005338 Anhydro-N-acetylmuramic acid kinase JO41_00885 IPR003148 Regulator of K+ conductance, N-terminal JO41_00885 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily JO41_00885 IPR006037 Regulator of K+ conductance, C-terminal JO41_00885 IPR036291 NAD(P)-binding domain superfamily JO41_00890 IPR022924 Cardiolipin synthase JO41_00890 IPR025202 Phospholipase D-like domain JO41_00890 IPR001736 Phospholipase D/Transphosphatidylase JO41_00905 IPR003439 ABC transporter-like JO41_00905 IPR003593 AAA+ ATPase domain JO41_00905 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_00905 IPR013611 Transport-associated OB, type 2 JO41_00905 IPR017871 ABC transporter, conserved site JO41_00905 IPR008995 Molybdate/tungstate binding, C-terminal JO41_00905 IPR015853 ABC transporter, ferric cation import, FbpC JO41_00910 IPR003445 Cation transporter JO41_00910 IPR004772 TrkH potassium transport family JO41_00915 IPR041699 Lon protease, AAA domain JO41_00915 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_00915 IPR027065 Lon protease JO41_00915 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_00915 IPR008269 Peptidase S16, Lon proteolytic domain JO41_00980 IPR005627 Copper homeostasis protein CutC JO41_00980 IPR023648 Copper homeostasis CutC domain JO41_00980 IPR036822 Copper homeostasis (CutC) domain superfamily JO41_01005 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like JO41_01015 IPR000101 Gamma-glutamyltranspeptidase JO41_01015 IPR029055 Nucleophile aminohydrolases, N-terminal JO41_01035 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase JO41_01035 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit JO41_01035 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_01035 IPR007419 BFD-like [2Fe-2S]-binding domain JO41_01035 IPR006076 FAD dependent oxidoreductase JO41_01035 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily JO41_01040 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B JO41_01040 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_01040 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily JO41_01040 IPR007419 BFD-like [2Fe-2S]-binding domain JO41_01040 IPR023753 FAD/NAD(P)-binding domain JO41_01050 IPR018484 Carbohydrate kinase, FGGY, N-terminal JO41_01050 IPR018485 Carbohydrate kinase, FGGY, C-terminal JO41_01050 IPR006000 Xylulokinase JO41_01050 IPR000577 Carbohydrate kinase, FGGY JO41_01050 IPR018483 Carbohydrate kinase, FGGY, conserved site JO41_01075 IPR001387 Cro/C1-type helix-turn-helix domain JO41_01075 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO41_01075 IPR013430 Toxin-antitoxin system, antidote protein, HigA JO41_01080 IPR007711 Toxin HigB-1 JO41_01080 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily JO41_01090 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA JO41_01090 IPR018211 Alcohol dehydrogenase, iron-type, conserved site JO41_01090 IPR039697 Iron-type alcohol dehydrogenase-like JO41_01095 IPR026591 Sirtuin, catalytic core small domain superfamily JO41_01095 IPR026590 Sirtuin family, catalytic core domain JO41_01095 IPR029035 DHS-like NAD/FAD-binding domain superfamily JO41_01110 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily JO41_01110 IPR018234 GTP cyclohydrolase I, conserved site JO41_01110 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK JO41_01110 IPR020602 GTP cyclohydrolase I domain JO41_01110 IPR001474 GTP cyclohydrolase I JO41_01115 IPR003768 Segregation and condensation protein A JO41_01135 IPR002942 RNA-binding S4 domain JO41_01135 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_01135 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_01135 IPR006225 Pseudouridine synthase, RluC/RluD JO41_01135 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_01135 IPR036986 RNA-binding S4 domain superfamily JO41_01150 IPR003444 Transcriptional regulator MraZ JO41_01150 IPR035642 MraZ, N-terminal JO41_01150 IPR020603 MraZ domain JO41_01150 IPR037914 SpoVT-AbrB domain superfamily JO41_01150 IPR038619 MraZ superfamily JO41_01150 IPR035644 MraZ, C-terminal JO41_01150 IPR007159 SpoVT-AbrB domain JO41_01155 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily JO41_01155 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_01155 IPR002903 Ribosomal RNA small subunit methyltransferase H JO41_01165 IPR036565 Mur-like, catalytic domain superfamily JO41_01165 IPR004101 Mur ligase, C-terminal JO41_01165 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase JO41_01165 IPR036615 Mur ligase, C-terminal domain superfamily JO41_01165 IPR013221 Mur ligase, central JO41_01165 IPR035911 MurE/MurF, N-terminal JO41_01165 IPR000713 Mur ligase, N-terminal catalytic domain JO41_01170 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA JO41_01170 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site JO41_01170 IPR013437 Probable peptidoglycan glycosyltransferase FtsW JO41_01175 IPR034746 POTRA domain JO41_01175 IPR005548 Cell division protein FtsQ/DivIB JO41_01175 IPR026579 Cell division protein FtsQ JO41_01175 IPR013685 POTRA domain, FtsQ-type JO41_01180 IPR003494 SHS2 domain inserted in FtsA JO41_01180 IPR020823 Cell division protein FtsA JO41_01185 IPR003008 Tubulin/FtsZ, GTPase domain JO41_01185 IPR008280 Tubulin/FtsZ, C-terminal JO41_01185 IPR024757 Cell division protein FtsZ, C-terminal JO41_01185 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain JO41_01185 IPR020805 Cell division protein FtsZ, conserved site JO41_01185 IPR036525 Tubulin/FtsZ, GTPase domain superfamily JO41_01185 IPR000158 Cell division protein FtsZ JO41_01190 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO41_01190 IPR013762 Integrase-like, catalytic domain superfamily JO41_01190 IPR010998 Integrase/recombinase, N-terminal JO41_01190 IPR004107 Integrase, SAM-like, N-terminal JO41_01190 IPR011932 Tyrosine recombinase XerD JO41_01190 IPR023009 Tyrosine recombinase XerC/XerD JO41_01190 IPR002104 Integrase, catalytic domain JO41_01195 IPR029935 Uracil permease JO41_01195 IPR006042 Xanthine/uracil permease JO41_01195 IPR006043 Xanthine/uracil/vitamin C permease JO41_01210 IPR018079 Ribosomal protein S4, conserved site JO41_01210 IPR036986 RNA-binding S4 domain superfamily JO41_01210 IPR002942 RNA-binding S4 domain JO41_01210 IPR005709 Ribosomal protein S4, bacterial-type JO41_01210 IPR001912 Ribosomal protein S4/S9, N-terminal JO41_01210 IPR022801 Ribosomal protein S4/S9 JO41_01235 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 JO41_01235 IPR018522 DNA topoisomerase, type IIA, conserved site JO41_01235 IPR006171 TOPRIM domain JO41_01235 IPR034160 DNA gyrase subunit B, TOPRIM domain JO41_01235 IPR001241 DNA topoisomerase, type IIA JO41_01235 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_01235 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_01235 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_01235 IPR003594 Histidine kinase/HSP90-like ATPase JO41_01235 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO41_01235 IPR011557 DNA gyrase, subunit B JO41_01235 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal JO41_01235 IPR002288 DNA gyrase B subunit, C-terminal JO41_01240 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily JO41_01240 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO41_01240 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal JO41_01240 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat JO41_01240 IPR005743 DNA gyrase, subunit A JO41_01240 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal JO41_01240 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta JO41_01245 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal JO41_01245 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain JO41_01245 IPR033922 NAD(P) binding domain of glutamate dehydrogenase JO41_01245 IPR014362 Glutamate dehydrogenase JO41_01245 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase JO41_01245 IPR036291 NAD(P)-binding domain superfamily JO41_01245 IPR033524 Leu/Phe/Val dehydrogenases active site JO41_01275 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_01275 IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain JO41_01275 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_01275 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO41_01275 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO41_01275 IPR023586 Isoleucine-tRNA ligase, type 2 JO41_01275 IPR002301 Isoleucine-tRNA ligase JO41_01275 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO41_01310 IPR038765 Papain-like cysteine peptidase superfamily JO41_01310 IPR025660 Cysteine peptidase, histidine active site JO41_01310 IPR004134 Peptidase C1B, bleomycin hydrolase JO41_01310 IPR000169 Cysteine peptidase, cysteine active site JO41_01320 IPR022281 ATP-dependent protease, HslV subunit JO41_01320 IPR029055 Nucleophile aminohydrolases, N-terminal JO41_01320 IPR001353 Proteasome, subunit alpha/beta JO41_01320 IPR023333 Proteasome B-type subunit JO41_01325 IPR003593 AAA+ ATPase domain JO41_01325 IPR003959 ATPase, AAA-type, core JO41_01325 IPR019489 Clp ATPase, C-terminal JO41_01325 IPR004491 Heat shock protein HslU JO41_01325 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01330 IPR019776 Flagellar basal body rod protein, conserved site JO41_01330 IPR001444 Flagellar basal body rod protein, N-terminal JO41_01330 IPR006300 Flagellar basal-body rod protein FlgB JO41_01335 IPR006299 Flagellar basal-body rod protein FlgC JO41_01335 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO41_01335 IPR001444 Flagellar basal body rod protein, N-terminal JO41_01335 IPR019776 Flagellar basal body rod protein, conserved site JO41_01340 IPR001624 Flagellar hook-basal body complex protein FliE JO41_01345 IPR006182 Secretory protein YscJ/FliF JO41_01345 IPR000067 Flagellar M-ring protein FliF JO41_01345 IPR013556 Flagellar M-ring C-terminal JO41_01350 IPR023087 Flagellar motor switch protein FliG, C-terminal JO41_01350 IPR000090 Flagellar motor switch protein FliG JO41_01350 IPR011002 Flagellar motor switch protein FliG, alpha-helical JO41_01350 IPR032779 Flagellar motor switch protein FliG, middle domain JO41_01350 IPR028263 Flagellar motor switch protein FliG, N-terminal domain JO41_01355 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE JO41_01360 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site JO41_01360 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01360 IPR040627 T3SS EscN ATPase, C-terminal JO41_01360 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO41_01360 IPR003593 AAA+ ATPase domain JO41_01360 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 JO41_01360 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO41_01360 IPR032463 ATPase, type III secretion system, FliI JO41_01360 IPR005714 ATPase, type III secretion system, FliI/YscN JO41_01385 IPR016153 Heat shock protein Hsp33, N-terminal JO41_01385 IPR000397 Heat shock protein Hsp33 JO41_01385 IPR016154 Heat shock protein Hsp33, C-terminal JO41_01390 IPR029151 Periplasmic sensor-like domain superfamily JO41_01390 IPR003660 HAMP domain JO41_01390 IPR033479 Double Cache domain 1 JO41_01390 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_01395 IPR014720 Double-stranded RNA-binding domain JO41_01395 IPR011907 Ribonuclease III JO41_01395 IPR000999 Ribonuclease III domain JO41_01395 IPR036389 Ribonuclease III, endonuclease domain superfamily JO41_01400 IPR036736 ACP-like superfamily JO41_01400 IPR009081 Phosphopantetheine binding ACP domain JO41_01400 IPR003231 Acyl carrier protein (ACP) JO41_01405 IPR011078 Pyridoxal phosphate homeostasis protein JO41_01405 IPR001608 Alanine racemase, N-terminal JO41_01405 IPR029066 PLP-binding barrel JO41_01440 IPR004534 L-seryl-tRNA(Sec) selenium transferase JO41_01440 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain JO41_01440 IPR015424 Pyridoxal phosphate-dependent transferase JO41_01440 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_01440 IPR018319 L-seryl-tRNA selenium transferase-like JO41_01445 IPR009000 Translation protein, beta-barrel domain superfamily JO41_01445 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_01445 IPR036390 Winged helix DNA-binding domain superfamily JO41_01445 IPR000795 Transcription factor, GTP-binding domain JO41_01445 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_01445 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal JO41_01445 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01445 IPR005225 Small GTP-binding protein domain JO41_01445 IPR015191 Translation elongation factor SelB, winged helix, type 3 JO41_01445 IPR015190 Translation elongation factor SelB, winged helix, type 2 JO41_01445 IPR015189 Translation elongation factor SelB, winged helix, type 1 JO41_01445 IPR004535 Translation elongation factor, selenocysteine-specific JO41_01450 IPR033479 Double Cache domain 1 JO41_01450 IPR003660 HAMP domain JO41_01450 IPR029151 Periplasmic sensor-like domain superfamily JO41_01450 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_01460 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily JO41_01460 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain JO41_01460 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain JO41_01460 IPR011167 Iron-dependent fumarate hydratase JO41_01460 IPR020557 Fumarate lyase, conserved site JO41_01480 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain JO41_01480 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO41_01480 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain JO41_01480 IPR017782 Hydroxyacylglutathione hydrolase JO41_01480 IPR001279 Metallo-beta-lactamase JO41_01490 IPR009197 Microcystin LR degradation protein MlrC JO41_01490 IPR010799 Microcystin LR degradation protein MlrC, C-terminal JO41_01490 IPR015995 Microcystin LR degradation protein MlrC, N-terminal JO41_01495 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_01495 IPR035906 MetI-like superfamily JO41_01500 IPR035906 MetI-like superfamily JO41_01500 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_01510 IPR003000 Sirtuin family JO41_01510 IPR026591 Sirtuin, catalytic core small domain superfamily JO41_01510 IPR028628 Sirtuin, class U JO41_01510 IPR026590 Sirtuin family, catalytic core domain JO41_01510 IPR029035 DHS-like NAD/FAD-binding domain superfamily JO41_01515 IPR022892 Ribonuclease HI JO41_01515 IPR036397 Ribonuclease H superfamily JO41_01515 IPR002156 Ribonuclease H domain JO41_01515 IPR012337 Ribonuclease H-like superfamily JO41_01520 IPR006218 DAHP synthetase I/KDSA JO41_01520 IPR006219 DHAP synthase, class 1 JO41_01520 IPR013785 Aldolase-type TIM barrel JO41_01525 IPR002549 Transmembrane protein TqsA-like JO41_01530 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase JO41_01530 IPR018321 Glucosamine-6-phosphate isomerase, conserved site JO41_01530 IPR004547 Glucosamine-6-phosphate isomerase JO41_01530 IPR037171 NagB/RpiA transferase-like JO41_01535 IPR032466 Metal-dependent hydrolase JO41_01535 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_01535 IPR006680 Amidohydrolase-related JO41_01535 IPR003764 N-acetylglucosamine-6-phosphate deacetylase JO41_01545 IPR003828 Epoxyqueuosine reductase QueH JO41_01550 IPR003439 ABC transporter-like JO41_01550 IPR032781 ABC-transporter extension domain JO41_01550 IPR017871 ABC transporter, conserved site JO41_01550 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01550 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily JO41_01550 IPR003593 AAA+ ATPase domain JO41_01550 IPR032524 ABC transporter Uup, C-terminal JO41_01585 IPR018228 Deoxyribonuclease, TatD-related, conserved site JO41_01585 IPR001130 TatD family JO41_01585 IPR032466 Metal-dependent hydrolase JO41_01585 IPR015991 Uncharacterised hydrolase TatD-type JO41_01590 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain JO41_01590 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal JO41_01590 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site JO41_01590 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising JO41_01590 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal JO41_01590 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal JO41_01595 IPR004872 Lipoprotein NlpA family JO41_01610 IPR024932 Flavin transferase ApbE JO41_01610 IPR042159 Flavin-trafficking protein ApbE JO41_01610 IPR003374 ApbE-like superfamily JO41_01620 IPR013785 Aldolase-type TIM barrel JO41_01620 IPR023014 Fructose-bisphosphate aldolase class I, Gram positive bacteria-type JO41_01620 IPR000741 Fructose-bisphosphate aldolase, class-I JO41_01675 IPR035901 GIY-YIG endonuclease superfamily JO41_01675 IPR038476 UvrC homology region 2 superfamily JO41_01675 IPR001162 UvrC family homology region JO41_01675 IPR004791 UvrABC system, subunit C JO41_01675 IPR036876 UVR domain superfamily JO41_01675 IPR000305 GIY-YIG endonuclease JO41_01675 IPR010994 RuvA domain 2-like JO41_01675 IPR001943 UVR domain JO41_01680 IPR023404 Radical SAM, alpha/beta horseshoe JO41_01680 IPR005839 Methylthiotransferase JO41_01680 IPR020612 Methylthiotransferase, conserved site JO41_01680 IPR013848 Methylthiotransferase, N-terminal JO41_01680 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO41_01680 IPR007197 Radical SAM JO41_01680 IPR002792 TRAM domain JO41_01680 IPR006638 Elp3/MiaB/NifB JO41_01680 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB JO41_01685 IPR002781 Transmembrane protein TauE-like JO41_01700 IPR003720 tRNA sulfurtransferase ThiI JO41_01700 IPR004114 THUMP domain JO41_01700 IPR020536 Thil, AANH domain JO41_01700 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_01710 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_01710 IPR004618 Aspartate--ammonia ligase JO41_01740 IPR002876 Transcriptional regulator TACO1-like JO41_01740 IPR017856 Integrase-like, N-terminal JO41_01740 IPR026564 Transcriptional regulator TACO1-like, domain 3 JO41_01740 IPR029072 YebC-like JO41_01750 IPR036420 BRCT domain superfamily JO41_01750 IPR001357 BRCT domain JO41_01750 IPR018239 NAD-dependent DNA ligase, active site JO41_01750 IPR013839 NAD-dependent DNA ligase, adenylation JO41_01750 IPR013840 NAD-dependent DNA ligase, N-terminal JO41_01750 IPR012340 Nucleic acid-binding, OB-fold JO41_01750 IPR001679 NAD-dependent DNA ligase JO41_01750 IPR010994 RuvA domain 2-like JO41_01750 IPR004150 NAD-dependent DNA ligase, OB-fold JO41_01755 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF JO41_01755 IPR018313 Solute-binding protein family 3, conserved site JO41_01755 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter JO41_01760 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF JO41_01775 IPR020606 Ribosomal protein S7, conserved site JO41_01775 IPR000235 Ribosomal protein S5/S7 JO41_01775 IPR036823 Ribosomal protein S7 domain superfamily JO41_01775 IPR023798 Ribosomal protein S7 domain JO41_01775 IPR005717 Ribosomal protein S7, bacterial/organellar-type JO41_01780 IPR005679 Ribosomal protein S12, bacterial-type JO41_01780 IPR012340 Nucleic acid-binding, OB-fold JO41_01780 IPR006032 Ribosomal protein S12/S23 JO41_01785 IPR000722 RNA polymerase, alpha subunit JO41_01785 IPR006592 RNA polymerase, N-terminal JO41_01785 IPR012754 DNA-directed RNA polymerase, subunit beta-prime JO41_01785 IPR042102 RNA polymerase Rpb1, domain 3 superfamily JO41_01785 IPR007066 RNA polymerase Rpb1, domain 3 JO41_01785 IPR007080 RNA polymerase Rpb1, domain 1 JO41_01785 IPR038120 RNA polymerase Rpb1, funnel domain superfamily JO41_01785 IPR007081 RNA polymerase Rpb1, domain 5 JO41_01785 IPR007083 RNA polymerase Rpb1, domain 4 JO41_01790 IPR007642 RNA polymerase Rpb2, domain 2 JO41_01790 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily JO41_01790 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain JO41_01790 IPR015712 DNA-directed RNA polymerase, subunit 2 JO41_01790 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain JO41_01790 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily JO41_01790 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type JO41_01790 IPR007121 RNA polymerase, beta subunit, conserved site JO41_01790 IPR014724 RNA polymerase Rpb2, OB-fold JO41_01790 IPR007641 RNA polymerase Rpb2, domain 7 JO41_01790 IPR007645 RNA polymerase Rpb2, domain 3 JO41_01790 IPR037034 RNA polymerase Rpb2, domain 2 superfamily JO41_01790 IPR007644 RNA polymerase, beta subunit, protrusion JO41_01795 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like JO41_01795 IPR013823 Ribosomal protein L7/L12, C-terminal JO41_01795 IPR008932 Ribosomal protein L7/L12, oligomerisation JO41_01795 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily JO41_01795 IPR000206 Ribosomal protein L7/L12 JO41_01800 IPR022973 Ribosomal protein L10 JO41_01800 IPR001790 Ribosomal protein L10P JO41_01805 IPR023674 Ribosomal protein L1-like JO41_01805 IPR002143 Ribosomal protein L1 JO41_01805 IPR005878 Ribosomal protein L1, bacterial-type JO41_01805 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein JO41_01805 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich JO41_01805 IPR023673 Ribosomal protein L1, conserved site JO41_01810 IPR020783 Ribosomal protein L11, C-terminal JO41_01810 IPR020784 Ribosomal protein L11, N-terminal JO41_01810 IPR020785 Ribosomal protein L11, conserved site JO41_01810 IPR000911 Ribosomal protein L11/L12 JO41_01810 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily JO41_01810 IPR036769 Ribosomal protein L11, C-terminal domain superfamily JO41_01810 IPR006519 Ribosomal protein L11, bacterial-type JO41_01815 IPR005824 KOW JO41_01815 IPR006645 NusG, N-terminal JO41_01815 IPR036735 NusG, N-terminal domain superfamily JO41_01815 IPR014722 Ribosomal protein L2, domain 2 JO41_01815 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site JO41_01815 IPR001062 Transcription antitermination protein, NusG JO41_01815 IPR008991 Translation protein SH3-like domain superfamily JO41_01820 IPR038379 SecE superfamily JO41_01820 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit JO41_01820 IPR005807 SecE subunit of protein translocation complex, bacterial-like JO41_01830 IPR038584 Ribosomal protein L33 superfamily JO41_01830 IPR011332 Zinc-binding ribosomal protein JO41_01830 IPR018264 Ribosomal protein L33, conserved site JO41_01830 IPR001705 Ribosomal protein L33 JO41_01845 IPR001669 Arginine repressor JO41_01845 IPR036251 Arginine repressor, C-terminal domain superfamily JO41_01845 IPR020900 Arginine repressor, DNA-binding domain JO41_01845 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_01845 IPR020899 Arginine repressor, C-terminal JO41_01845 IPR036390 Winged helix DNA-binding domain superfamily JO41_01850 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA JO41_01850 IPR042118 QueA, domain 1 JO41_01850 IPR042119 QueA, domain 2 JO41_01850 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily JO41_01855 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_01855 IPR006225 Pseudouridine synthase, RluC/RluD JO41_01855 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_01855 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_01855 IPR002942 RNA-binding S4 domain JO41_01855 IPR036986 RNA-binding S4 domain superfamily JO41_01865 IPR038763 DHH phosphoesterase superfamily JO41_01865 IPR001667 DDH domain JO41_01865 IPR003156 DHHA1 domain JO41_01870 IPR036397 Ribonuclease H superfamily JO41_01870 IPR012337 Ribonuclease H-like superfamily JO41_01870 IPR001584 Integrase, catalytic core JO41_01875 IPR001383 Ribosomal protein L28 JO41_01875 IPR037147 Ribosomal protein L28/L24 superfamily JO41_01875 IPR026569 Ribosomal protein L28/L24 JO41_01875 IPR034704 L28p-like JO41_01905 IPR003593 AAA+ ATPase domain JO41_01905 IPR003439 ABC transporter-like JO41_01905 IPR017871 ABC transporter, conserved site JO41_01905 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01920 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_01920 IPR013324 RNA polymerase sigma factor, region 3/4-like JO41_01920 IPR039425 RNA polymerase sigma-70 like JO41_01920 IPR007627 RNA polymerase sigma-70 region 2 JO41_01920 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site JO41_01920 IPR013325 RNA polymerase sigma factor, region 2 JO41_01920 IPR014286 RNA polymerase sigma-70 RpoE type JO41_01920 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 JO41_01920 IPR014284 RNA polymerase sigma-70 like domain JO41_01940 IPR029045 ClpP/crotonase-like domain superfamily JO41_01940 IPR004635 Peptidase S49, SppA JO41_01940 IPR004634 Peptidase S49, protease IV JO41_01940 IPR002142 Peptidase S49 JO41_01940 IPR033854 Signal peptide peptidase A JO41_01945 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO41_01945 IPR003593 AAA+ ATPase domain JO41_01945 IPR017871 ABC transporter, conserved site JO41_01945 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01945 IPR003439 ABC transporter-like JO41_01955 IPR035906 MetI-like superfamily JO41_01955 IPR025966 Oligopeptide transport permease C-like, N-terminal domain JO41_01955 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_01960 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_01960 IPR035906 MetI-like superfamily JO41_01965 IPR000914 Solute-binding protein family 5 domain JO41_01965 IPR023765 Solute-binding protein family 5, conserved site JO41_01965 IPR030678 Peptide/nickel binding protein, MppA-type JO41_01965 IPR039424 Solute-binding protein family 5 JO41_01970 IPR033140 Lipase, GDXG, putative serine active site JO41_01970 IPR002168 Lipase, GDXG, putative histidine active site JO41_01970 IPR029058 Alpha/Beta hydrolase fold JO41_01970 IPR013094 Alpha/beta hydrolase fold-3 JO41_01985 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_01985 IPR012340 Nucleic acid-binding, OB-fold JO41_01985 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_01985 IPR001650 Helicase, C-terminal JO41_01985 IPR033454 RecG, wedge domain JO41_01985 IPR011545 DEAD/DEAH box helicase domain JO41_01985 IPR004609 ATP-dependent DNA helicase RecG JO41_02050 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02050 IPR002611 IstB-like ATP-binding protein JO41_02050 IPR003593 AAA+ ATPase domain JO41_02065 IPR001525 C-5 cytosine methyltransferase JO41_02065 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site JO41_02065 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO41_02065 IPR001387 Cro/C1-type helix-turn-helix domain JO41_02065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_02065 IPR018117 DNA methylase, C-5 cytosine-specific, active site JO41_02145 IPR025931 TaqI-like C-terminal specificity domain JO41_02145 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_02145 IPR011639 Restriction modification methylase Eco57I JO41_02145 IPR023135 N6 adenine-specific DNA methyltransferase, TaqI class, C-terminal JO41_02145 IPR021188 N6 adenine-specific DNA methyltransferase, TaqI class JO41_02145 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_02210 IPR007430 Bacterial virulence protein VirB8 JO41_02210 IPR035658 Conjugal transfer protein TrbF JO41_02210 IPR032710 NTF2-like domain superfamily JO41_02225 IPR003593 AAA+ ATPase domain JO41_02225 IPR004346 CagE, TrbE, VirB component of type IV transporter system JO41_02225 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain JO41_02225 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02250 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02250 IPR014149 Conjugative transfer, TrbB JO41_02250 IPR001482 Type II/IV secretion system protein JO41_02280 IPR023406 DNA topoisomerase, type IA, active site JO41_02280 IPR023405 DNA topoisomerase, type IA, core domain JO41_02280 IPR006171 TOPRIM domain JO41_02280 IPR034144 DNA topoisomerase 3-like, TOPRIM domain JO41_02280 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 JO41_02280 IPR003602 DNA topoisomerase, type IA, DNA-binding domain JO41_02280 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 JO41_02280 IPR013497 DNA topoisomerase, type IA, central JO41_02280 IPR000380 DNA topoisomerase, type IA JO41_02280 IPR005738 DNA topoisomerase III JO41_02280 IPR003601 DNA topoisomerase, type IA, domain 2 JO41_02280 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 JO41_02305 IPR007340 Opacity-associated protein A JO41_02305 IPR016047 Peptidase M23 JO41_02305 IPR011055 Duplicated hybrid motif JO41_02315 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO41_02315 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO41_02315 IPR000813 7Fe ferredoxin JO41_02320 IPR007861 DNA mismatch repair protein MutS, clamp JO41_02320 IPR007696 DNA mismatch repair protein MutS, core JO41_02320 IPR000432 DNA mismatch repair protein MutS, C-terminal JO41_02320 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02320 IPR017261 DNA mismatch repair protein MutS/MSH JO41_02320 IPR036678 MutS, connector domain superfamily JO41_02320 IPR007695 DNA mismatch repair protein MutS-like, N-terminal JO41_02320 IPR005748 DNA mismatch repair protein MutS JO41_02320 IPR007860 DNA mismatch repair protein MutS, connector domain JO41_02320 IPR036187 DNA mismatch repair protein MutS, core domain superfamily JO41_02320 IPR016151 DNA mismatch repair protein MutS, N-terminal JO41_02330 IPR000184 Bacterial surface antigen (D15) JO41_02330 IPR039910 Surface antigen D15-like JO41_02330 IPR034746 POTRA domain JO41_02330 IPR010827 POTRA domain, BamA/TamA-like JO41_02330 IPR023707 Outer membrane protein assembly factor BamA JO41_02350 IPR018094 Thymidylate kinase JO41_02350 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02350 IPR018095 Thymidylate kinase, conserved site JO41_02350 IPR039430 Thymidylate kinase-like domain JO41_02360 IPR011055 Duplicated hybrid motif JO41_02360 IPR007340 Opacity-associated protein A JO41_02360 IPR016047 Peptidase M23 JO41_02375 IPR007557 PSP1, C-terminal JO41_02390 IPR041121 SDH, C-terminal JO41_02390 IPR011342 Shikimate dehydrogenase JO41_02390 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal JO41_02390 IPR022893 Shikimate dehydrogenase family JO41_02390 IPR036291 NAD(P)-binding domain superfamily JO41_02395 IPR037171 NagB/RpiA transferase-like JO41_02395 IPR004788 Ribose 5-phosphate isomerase, type A JO41_02395 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup JO41_02400 IPR035994 Nucleoside phosphorylase superfamily JO41_02400 IPR010049 MTA/SAH nucleosidase JO41_02400 IPR000845 Nucleoside phosphorylase domain JO41_02425 IPR003425 CCB3/YggT JO41_02435 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain JO41_02435 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily JO41_02435 IPR003702 Acetyl-CoA hydrolase/transferase JO41_02435 IPR037171 NagB/RpiA transferase-like JO41_02435 IPR023990 Butyryl-CoA:acetate CoA-transferase JO41_02440 IPR029045 ClpP/crotonase-like domain superfamily JO41_02440 IPR001753 Enoyl-CoA hydratase/isomerase JO41_02440 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site JO41_02440 IPR014748 Enoyl-CoA hydratase, C-terminal JO41_02445 IPR036291 NAD(P)-binding domain superfamily JO41_02445 IPR022694 3-hydroxyacyl-CoA dehydrogenase JO41_02445 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site JO41_02445 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding JO41_02445 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal JO41_02445 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO41_02445 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO41_02450 IPR013570 Transcription regulator YsiA, C-terminal JO41_02450 IPR009057 Homeobox-like domain superfamily JO41_02450 IPR001647 DNA-binding HTH domain, TetR-type JO41_02450 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_02455 IPR008279 PEP-utilising enzyme, mobile domain JO41_02455 IPR036637 Phosphohistidine domain superfamily JO41_02455 IPR013815 ATP-grasp fold, subdomain 1 JO41_02455 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding JO41_02460 IPR002528 Multi antimicrobial extrusion protein JO41_02470 IPR036397 Ribonuclease H superfamily JO41_02470 IPR012337 Ribonuclease H-like superfamily JO41_02470 IPR001584 Integrase, catalytic core JO41_02470 IPR025948 HTH-like domain JO41_02470 IPR038965 Transposase InsF-like JO41_02475 IPR002514 Transposase IS3/IS911family JO41_02475 IPR009057 Homeobox-like domain superfamily JO41_02485 IPR013611 Transport-associated OB, type 2 JO41_02485 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02485 IPR008995 Molybdate/tungstate binding, C-terminal JO41_02485 IPR015853 ABC transporter, ferric cation import, FbpC JO41_02485 IPR003439 ABC transporter-like JO41_02485 IPR003593 AAA+ ATPase domain JO41_02485 IPR017871 ABC transporter, conserved site JO41_02490 IPR000836 Phosphoribosyltransferase domain JO41_02490 IPR004467 Orotate phosphoribosyl transferase domain JO41_02490 IPR029057 Phosphoribosyltransferase-like JO41_02490 IPR023031 Orotate phosphoribosyltransferase JO41_02495 IPR004722 Dihydroorotase JO41_02495 IPR002195 Dihydroorotase, conserved site JO41_02495 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_02495 IPR006680 Amidohydrolase-related JO41_02495 IPR032466 Metal-dependent hydrolase JO41_02505 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 JO41_02505 IPR005720 Dihydroorotate dehydrogenase domain JO41_02505 IPR024920 Dihydroorotate dehydrogenase, class 1 JO41_02505 IPR013785 Aldolase-type TIM barrel JO41_02505 IPR001295 Dihydroorotate dehydrogenase, conserved site JO41_02505 IPR033888 Dihydroorotate dehydrogenase, class 1B JO41_02515 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal JO41_02515 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily JO41_02515 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal JO41_02515 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily JO41_02515 IPR002801 Aspartate transcarbamylase regulatory subunit JO41_02520 IPR006130 Aspartate/ornithine carbamoyltransferase JO41_02520 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily JO41_02520 IPR002082 Aspartate carbamoyltransferase JO41_02520 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain JO41_02520 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding JO41_02520 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily JO41_02525 IPR011066 Mechanosensitive ion channel MscS, C-terminal JO41_02525 IPR006685 Mechanosensitive ion channel MscS JO41_02525 IPR010920 LSM domain superfamily JO41_02525 IPR006686 Mechanosensitive ion channel MscS, conserved site JO41_02525 IPR023408 Mechanosensitive ion channel MscS domain superfamily JO41_02525 IPR008910 Conserved TM helix JO41_02525 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 JO41_02530 IPR020483 Uncharacterised protein family YgbA JO41_02540 IPR013113 FAD-binding 9, siderophore-interacting JO41_02540 IPR017927 FAD-binding domain, ferredoxin reductase-type JO41_02540 IPR003593 AAA+ ATPase domain JO41_02540 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO41_02540 IPR011527 ABC transporter type 1, transmembrane domain JO41_02540 IPR003439 ABC transporter-like JO41_02540 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_02540 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02540 IPR017938 Riboflavin synthase-like beta-barrel JO41_02540 IPR007037 Siderophore-interacting protein, C-terminal domain JO41_02540 IPR017871 ABC transporter, conserved site JO41_02555 IPR017871 ABC transporter, conserved site JO41_02555 IPR011917 ABC transporter, lipid A export, MsbA JO41_02555 IPR003439 ABC transporter-like JO41_02555 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_02555 IPR011527 ABC transporter type 1, transmembrane domain JO41_02555 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02555 IPR039421 Type I protein exporter JO41_02555 IPR003593 AAA+ ATPase domain JO41_02560 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_02560 IPR004524 Aspartate-tRNA ligase, type 1 JO41_02560 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) JO41_02560 IPR004115 GAD-like domain superfamily JO41_02560 IPR029351 GAD domain JO41_02560 IPR012340 Nucleic acid-binding, OB-fold JO41_02560 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type JO41_02560 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb JO41_02565 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) JO41_02565 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_02565 IPR004525 Elongation factor P--(R)-beta-lysine ligase JO41_02565 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal JO41_02620 IPR000890 Aliphatic acid kinase, short-chain JO41_02620 IPR023865 Aliphatic acid kinase, short-chain, conserved site JO41_02620 IPR004372 Acetate/propionate kinase JO41_02630 IPR012839 Organic radical enzyme activase JO41_02630 IPR034457 Organic radical-activating enzymes JO41_02630 IPR013785 Aldolase-type TIM barrel JO41_02630 IPR007197 Radical SAM JO41_02630 IPR001989 Radical-activating enzyme, conserved site JO41_02630 IPR012838 Pyruvate formate-lyase 1 activating enzyme JO41_02630 IPR034465 Pyruvate formate-lyase activase JO41_02640 IPR001150 Glycine radical domain JO41_02640 IPR005949 Formate acetyltransferase JO41_02640 IPR004184 Pyruvate formate lyase domain JO41_02640 IPR019777 Formate C-acetyltransferase glycine radical, conserved site JO41_02650 IPR002317 Serine-tRNA ligase, type1 JO41_02650 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO41_02650 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_02650 IPR015866 Serine-tRNA synthetase, type1, N-terminal JO41_02650 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm JO41_02650 IPR033729 Serine-tRNA ligase catalytic core domain JO41_02650 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily JO41_02655 IPR004692 Preprotein translocase SecG subunit JO41_02660 IPR001633 EAL domain JO41_02660 IPR035919 EAL domain superfamily JO41_02660 IPR016132 Phytochrome chromophore attachment domain JO41_02660 IPR029787 Nucleotide cyclase JO41_02660 IPR001294 Phytochrome JO41_02660 IPR003018 GAF domain JO41_02660 IPR029016 GAF-like domain superfamily JO41_02660 IPR013515 Phytochrome, central region JO41_02660 IPR000160 GGDEF domain JO41_02665 IPR005517 Translation elongation factor EFG/EF2, domain IV JO41_02665 IPR009000 Translation protein, beta-barrel domain superfamily JO41_02665 IPR000795 Transcription factor, GTP-binding domain JO41_02665 IPR004540 Translation elongation factor EFG/EF2 JO41_02665 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_02665 IPR000640 Elongation factor EFG, domain V-like JO41_02665 IPR005225 Small GTP-binding protein domain JO41_02665 IPR035649 EFG, domain V JO41_02665 IPR035647 EF-G domain III/V-like JO41_02665 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_02665 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_02665 IPR031157 Tr-type G domain, conserved site JO41_02665 IPR009022 Elongation factor G, domain III JO41_02665 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02665 IPR041095 Elongation Factor G, domain II JO41_02670 IPR022953 ATP-dependent 6-phosphofructokinase JO41_02670 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type JO41_02670 IPR012829 Phosphofructokinase, mixed-substrate PFK group III JO41_02670 IPR035966 Phosphofructokinase superfamily JO41_02670 IPR000023 Phosphofructokinase domain JO41_02680 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain JO41_02680 IPR015807 Histidine-tRNA ligase JO41_02680 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_02680 IPR036621 Anticodon-binding domain superfamily JO41_02680 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit JO41_02685 IPR012340 Nucleic acid-binding, OB-fold JO41_02685 IPR022967 RNA-binding domain, S1 JO41_02685 IPR003029 S1 domain JO41_02685 IPR000110 Ribosomal protein S1 JO41_02690 IPR011006 CheY-like superfamily JO41_02690 IPR009057 Homeobox-like domain superfamily JO41_02690 IPR003593 AAA+ ATPase domain JO41_02690 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02690 IPR010114 DNA-binding transcriptional regulator NtrC JO41_02690 IPR025944 Sigma-54 interaction domain, conserved site JO41_02690 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO41_02690 IPR001789 Signal transduction response regulator, receiver domain JO41_02690 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO41_02690 IPR002078 RNA polymerase sigma factor 54 interaction domain JO41_02690 IPR002197 DNA binding HTH domain, Fis-type JO41_02695 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_02695 IPR013026 Tetratricopeptide repeat-containing domain JO41_02705 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_02705 IPR003660 HAMP domain JO41_02705 IPR033479 Double Cache domain 1 JO41_02705 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding JO41_02705 IPR029151 Periplasmic sensor-like domain superfamily JO41_02710 IPR004090 Chemotaxis methyl-accepting receptor JO41_02710 IPR003660 HAMP domain JO41_02710 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_02735 IPR002371 Flagellar hook-associated protein 1 JO41_02735 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO41_02735 IPR010810 Flagellin hook, IN motif JO41_02740 IPR013384 Flagellar hook-associated protein 3 JO41_02740 IPR001029 Flagellin, D0/D1 domain JO41_02745 IPR003775 Flagellar assembly factor FliW JO41_02745 IPR024046 Flagellar assembly factor FliW domain superfamily JO41_02750 IPR036107 Carbon storage regulator superfamily JO41_02750 IPR003751 Translational regulator CsrA JO41_02755 IPR003660 HAMP domain JO41_02755 IPR006674 HD domain JO41_02755 IPR003607 HD/PDEase domain JO41_02755 IPR037522 HD-GYP domain JO41_02760 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB JO41_02760 IPR000905 Gcp-like domain JO41_02765 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02765 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE JO41_02770 IPR036986 RNA-binding S4 domain superfamily JO41_02770 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_02770 IPR006225 Pseudouridine synthase, RluC/RluD JO41_02770 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_02770 IPR002942 RNA-binding S4 domain JO41_02770 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_02795 IPR001296 Glycosyl transferase, family 1 JO41_02795 IPR013534 Starch synthase, catalytic domain JO41_02795 IPR011835 Bacterial/plant glycogen synthase JO41_02830 IPR004708 Aspartate ammonia-lyase JO41_02830 IPR020557 Fumarate lyase, conserved site JO41_02830 IPR024083 Fumarase/histidase, N-terminal JO41_02830 IPR008948 L-Aspartase-like JO41_02830 IPR000362 Fumarate lyase family JO41_02830 IPR022761 Fumarate lyase, N-terminal JO41_02830 IPR018951 Fumarase C, C-terminal JO41_02835 IPR002125 Cytidine and deoxycytidylate deaminase domain JO41_02835 IPR006262 Cytidine deaminase, homotetrameric JO41_02835 IPR016193 Cytidine deaminase-like JO41_02835 IPR016192 APOBEC/CMP deaminase, zinc-binding JO41_02855 IPR013785 Aldolase-type TIM barrel JO41_02855 IPR031337 KDPG/KHG aldolase, active site 1 JO41_02855 IPR031338 KDPG/KHG aldolase, active site 2 JO41_02855 IPR000887 KDPG/KHG aldolase JO41_02860 IPR014743 Chloride channel, core JO41_02860 IPR023861 Chloride channel, ClcA JO41_02860 IPR001807 Chloride channel, voltage gated JO41_02865 IPR006042 Xanthine/uracil permease JO41_02865 IPR017588 Uric acid permease UacT-like JO41_02865 IPR006043 Xanthine/uracil/vitamin C permease JO41_02870 IPR017588 Uric acid permease UacT-like JO41_02870 IPR006042 Xanthine/uracil permease JO41_02870 IPR006043 Xanthine/uracil/vitamin C permease JO41_02895 IPR036876 UVR domain superfamily JO41_02895 IPR001650 Helicase, C-terminal JO41_02895 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_02895 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_02895 IPR001943 UVR domain JO41_02895 IPR006935 Helicase/UvrB, N-terminal JO41_02895 IPR024759 UvrB, YAD/RRR-motif-containing domain JO41_02895 IPR041471 UvrB, interaction domain JO41_02895 IPR004807 UvrABC system, subunit B JO41_02900 IPR004536 Selenophosphate synthetase JO41_02900 IPR010918 PurM-like, C-terminal domain JO41_02900 IPR023061 Selenophosphate synthetase, class I JO41_02900 IPR036676 PurM-like, C-terminal domain superfamily JO41_02900 IPR016188 PurM-like, N-terminal domain JO41_02900 IPR036921 PurM-like, N-terminal domain superfamily JO41_02925 IPR010240 Cysteine desulfurase IscS JO41_02925 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_02925 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site JO41_02925 IPR000192 Aminotransferase class V domain JO41_02925 IPR015424 Pyridoxal phosphate-dependent transferase JO41_02925 IPR016454 Cysteine desulfurase JO41_02925 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_02940 IPR018631 AAA-ATPase-like domain JO41_02940 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_02945 IPR003760 ABC transporter substrate-binding protein PnrA-like JO41_02945 IPR028082 Periplasmic binding protein-like I JO41_03005 IPR006675 HDIG domain JO41_03005 IPR003607 HD/PDEase domain JO41_03005 IPR006674 HD domain JO41_03005 IPR004088 K Homology domain, type 1 JO41_03005 IPR036612 K Homology domain, type 1 superfamily JO41_03005 IPR017705 Ribonuclease Y JO41_03005 IPR022711 Ribonuclease Y, N-terminal JO41_03005 IPR004087 K Homology domain JO41_03010 IPR011851 Sodium/proline symporter JO41_03010 IPR038377 Sodium/glucose symporter superfamily JO41_03010 IPR001734 Sodium/solute symporter JO41_03010 IPR018212 Sodium/solute symporter, conserved site JO41_03020 IPR036086 ParB/Sulfiredoxin superfamily JO41_03020 IPR003115 ParB/Sulfiredoxin JO41_03020 IPR004437 ParB/RepB/Spo0J partition protein JO41_03020 IPR041468 ParB/Spo0J, HTH domain JO41_03025 IPR025669 AAA domain JO41_03025 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03030 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_03030 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_03030 IPR008268 Peptidase S16, active site JO41_03030 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03030 IPR027065 Lon protease JO41_03030 IPR008269 Peptidase S16, Lon proteolytic domain JO41_03030 IPR003111 Lon, substrate-binding domain JO41_03030 IPR027543 Lon protease, bacterial JO41_03030 IPR015947 PUA-like superfamily JO41_03030 IPR003959 ATPase, AAA-type, core JO41_03030 IPR003593 AAA+ ATPase domain JO41_03030 IPR004815 Lon protease, bacterial/eukaryotic-type JO41_03080 IPR036291 NAD(P)-binding domain superfamily JO41_03080 IPR001509 NAD-dependent epimerase/dehydratase JO41_03090 IPR029044 Nucleotide-diphospho-sugar transferases JO41_03090 IPR002495 Glycosyl transferase, family 8 JO41_03090 IPR001173 Glycosyltransferase 2-like JO41_03105 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal JO41_03105 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation JO41_03105 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily JO41_03105 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal JO41_03105 IPR017476 UDP-glucose/GDP-mannose dehydrogenase JO41_03105 IPR036291 NAD(P)-binding domain superfamily JO41_03105 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO41_03105 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase JO41_03110 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain JO41_03110 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like JO41_03125 IPR007554 CDP-glycerol glycerophosphotransferase JO41_03135 IPR011004 Trimeric LpxA-like superfamily JO41_03135 IPR001451 Hexapeptide repeat JO41_03140 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03140 IPR025420 Domain of unknown function DUF4143 JO41_03140 IPR041682 AAA domain, group 14 JO41_03145 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_03145 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_03145 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase JO41_03145 IPR015424 Pyridoxal phosphate-dependent transferase JO41_03150 IPR004104 Oxidoreductase, C-terminal JO41_03150 IPR000683 Oxidoreductase, N-terminal JO41_03150 IPR036291 NAD(P)-binding domain superfamily JO41_03175 IPR023358 Peptidase M18, domain 2 JO41_03175 IPR001948 Peptidase M18 JO41_03175 IPR022983 M18 family aminopeptidase 1, putative JO41_03180 IPR023025 Serine/threonine transporter SstT JO41_03180 IPR001991 Sodium:dicarboxylate symporter JO41_03180 IPR036458 Sodium:dicarboxylate symporter superfamily JO41_03185 IPR018209 Pyruvate kinase, active site JO41_03185 IPR011037 Pyruvate kinase-like, insert domain superfamily JO41_03185 IPR015793 Pyruvate kinase, barrel JO41_03185 IPR040442 Pyruvate kinase-like domain superfamily JO41_03185 IPR008279 PEP-utilising enzyme, mobile domain JO41_03185 IPR015795 Pyruvate kinase, C-terminal JO41_03185 IPR036918 Pyruvate kinase, C-terminal domain superfamily JO41_03185 IPR015806 Pyruvate kinase, insert domain superfamily JO41_03185 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO41_03185 IPR001697 Pyruvate kinase JO41_03185 IPR036637 Phosphohistidine domain superfamily JO41_03200 IPR022925 NADH pyrophosphatase NudC JO41_03200 IPR000086 NUDIX hydrolase domain JO41_03200 IPR015376 Zinc ribbon, NADH pyrophosphatase JO41_03200 IPR015797 NUDIX hydrolase-like domain superfamily JO41_03200 IPR020084 NUDIX hydrolase, conserved site JO41_03200 IPR015375 NADH pyrophosphatase-like, N-terminal JO41_03205 IPR017236 Glycine/sarcosine/betaine reductase, component C, beta JO41_03205 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO41_03205 IPR016039 Thiolase-like JO41_03210 IPR012116 Glycine/sarcosine/betaine reductase complex, protein C, alpha subunit JO41_03210 IPR003664 Fatty acid synthesis PlsX protein JO41_03215 IPR009875 PilZ domain JO41_03225 IPR016185 Pre-ATP-grasp domain superfamily JO41_03225 IPR011127 D-alanine--D-alanine ligase, N-terminal domain JO41_03225 IPR011095 D-alanine--D-alanine ligase, C-terminal JO41_03225 IPR005905 D-alanine--D-alanine ligase JO41_03225 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site JO41_03225 IPR013815 ATP-grasp fold, subdomain 1 JO41_03225 IPR011761 ATP-grasp fold JO41_03230 IPR003706 CstA, N-terminal domain JO41_03240 IPR029056 Ribokinase-like JO41_03240 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site JO41_03240 IPR011877 Ribokinase JO41_03240 IPR011611 Carbohydrate kinase PfkB JO41_03240 IPR002139 Ribokinase/fructokinase JO41_03245 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site JO41_03245 IPR002139 Ribokinase/fructokinase JO41_03245 IPR029056 Ribokinase-like JO41_03245 IPR011611 Carbohydrate kinase PfkB JO41_03245 IPR011877 Ribokinase JO41_03250 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA JO41_03250 IPR036452 Ribonucleoside hydrolase-like JO41_03250 IPR023186 Inosine/uridine-preferring nucleoside hydrolase JO41_03250 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain JO41_03250 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site JO41_03270 IPR003760 ABC transporter substrate-binding protein PnrA-like JO41_03270 IPR028082 Periplasmic binding protein-like I JO41_03280 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I JO41_03280 IPR036291 NAD(P)-binding domain superfamily JO41_03280 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain JO41_03280 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain JO41_03280 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family JO41_03280 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site JO41_03285 IPR008302 Uncharacterised conserved protein UCP016719 JO41_03295 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily JO41_03295 IPR006669 Magnesium transporter MgtE JO41_03295 IPR038048 Magnesium transporter MgtE, transmembrane domain JO41_03295 IPR038076 MgtE, N-terminal domain superfamily JO41_03295 IPR006668 Magnesium transporter, MgtE intracellular domain JO41_03295 IPR000644 CBS domain JO41_03295 IPR006667 SLC41 divalent cation transporters, integral membrane domain JO41_03300 IPR039606 Phytol/farnesol kinase JO41_03310 IPR006043 Xanthine/uracil/vitamin C permease JO41_03310 IPR026033 Azaguanine-like transporters JO41_03350 IPR000175 Sodium:neurotransmitter symporter JO41_03350 IPR037272 Sodium:neurotransmitter symporter superfamily JO41_03355 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_03355 IPR013026 Tetratricopeptide repeat-containing domain JO41_03360 IPR000836 Phosphoribosyltransferase domain JO41_03360 IPR029057 Phosphoribosyltransferase-like JO41_03365 IPR023386 Lysine-tRNA ligase, insertion domain superfamily JO41_03365 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 JO41_03365 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_03365 IPR042078 Lysine tRNA ligase, stem contact fold domain JO41_03365 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_03365 IPR002904 Lysine-tRNA ligase JO41_03365 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding JO41_03375 IPR000032 Phosphocarrier protein HPr-like JO41_03375 IPR035895 HPr-like superfamily JO41_03375 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site JO41_03375 IPR002114 Phosphotransferase system, HPr serine phosphorylation site JO41_03380 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily JO41_03380 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal JO41_03380 IPR011104 HPr kinase/phosphorylase, C-terminal JO41_03380 IPR003755 HPr(Ser) kinase/phosphorylase JO41_03390 IPR017853 Glycoside hydrolase superfamily JO41_03390 IPR014756 Immunoglobulin E-set JO41_03390 IPR013783 Immunoglobulin-like fold JO41_03390 IPR011837 Glycogen debranching enzyme, GlgX type JO41_03390 IPR013780 Glycosyl hydrolase, all-beta JO41_03390 IPR004193 Glycoside hydrolase, family 13, N-terminal JO41_03390 IPR006047 Glycosyl hydrolase, family 13, catalytic domain JO41_03395 IPR011833 Glycogen/starch/alpha-glucan phosphorylase JO41_03395 IPR000811 Glycosyl transferase, family 35 JO41_03395 IPR035090 Phosphorylase pyridoxal-phosphate attachment site JO41_03400 IPR036850 Nucleoside diphosphate kinase-like domain superfamily JO41_03400 IPR023005 Nucleoside diphosphate kinase, active site JO41_03400 IPR001564 Nucleoside diphosphate kinase JO41_03400 IPR034907 Nucleoside diphosphate kinase-like domain JO41_03405 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily JO41_03405 IPR003593 AAA+ ATPase domain JO41_03405 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO41_03405 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily JO41_03405 IPR022941 Signal recognition particle, SRP54 subunit JO41_03405 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03405 IPR013822 Signal recognition particle SRP54, helical bundle JO41_03405 IPR004780 Signal recognition particle protein JO41_03405 IPR004125 Signal recognition particle, SRP54 subunit, M-domain JO41_03415 IPR029057 Phosphoribosyltransferase-like JO41_03415 IPR005222 Competence protein ComF JO41_03415 IPR000836 Phosphoribosyltransferase domain JO41_03420 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial JO41_03420 IPR022645 Protein-export membrane protein SecD/SecF, bacterial JO41_03420 IPR005665 Protein-export membrane protein SecF, bacterial JO41_03425 IPR022645 Protein-export membrane protein SecD/SecF, bacterial JO41_03425 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial JO41_03425 IPR005791 Protein translocase subunit SecD JO41_03430 IPR003849 Preprotein translocase YajC JO41_03435 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site JO41_03435 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain JO41_03435 IPR029000 Cyclophilin-like domain superfamily JO41_03445 IPR036867 R3H domain superfamily JO41_03445 IPR032782 Jag, N-terminal JO41_03445 IPR038247 Jag, N-terminal domain superfamily JO41_03445 IPR015946 K homology domain-like, alpha/beta JO41_03445 IPR001374 R3H domain JO41_03445 IPR034079 Jag, R3H domain JO41_03445 IPR039247 Jag protein JO41_03445 IPR038008 Jag, KH domain JO41_03450 IPR038210 Membrane insertase YidC, periplasmic domain JO41_03450 IPR028053 Membrane insertase YidC, N-terminal JO41_03450 IPR028055 Membrane insertase YidC/Oxa1, C-terminal JO41_03450 IPR019998 Membrane insertase YidC JO41_03450 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 JO41_03450 IPR038221 YidC, periplasmic domain superfamily JO41_03460 IPR000271 Ribosomal protein L34 JO41_03460 IPR020939 Ribosomal protein L34, conserved site JO41_03485 IPR036098 Thymidylate synthase ThyX superfamily JO41_03485 IPR003669 Thymidylate synthase ThyX JO41_03490 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily JO41_03490 IPR002772 Glycoside hydrolase family 3 C-terminal domain JO41_03490 IPR019800 Glycoside hydrolase, family 3, active site JO41_03490 IPR001764 Glycoside hydrolase, family 3, N-terminal JO41_03490 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily JO41_03490 IPR017853 Glycoside hydrolase superfamily JO41_03495 IPR023753 FAD/NAD(P)-binding domain JO41_03495 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_03495 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site JO41_03495 IPR005982 Thioredoxin reductase JO41_03500 IPR012147 Phosphate acetyl/butyryltransferase JO41_03500 IPR004614 Phosphate acetyltransferase JO41_03500 IPR042113 Phosphate acetyltransferase, domain 1 JO41_03500 IPR042112 Phosphate acetyltransferase, domain 2 JO41_03500 IPR002505 Phosphate acetyl/butaryl transferase JO41_03525 IPR016099 Prismane-like, alpha/beta-sandwich JO41_03525 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase JO41_03525 IPR011254 Prismane-like superfamily JO41_03525 IPR010048 Hydroxylamine reductase JO41_03525 IPR016100 Prismane, alpha-bundle JO41_03530 IPR018370 Chaperonin Cpn60, conserved site JO41_03530 IPR001844 Chaperonin Cpn60 JO41_03530 IPR027409 GroEL-like apical domain superfamily JO41_03530 IPR027413 GroEL-like equatorial domain superfamily JO41_03530 IPR002423 Chaperonin Cpn60/TCP-1 family JO41_03530 IPR027410 TCP-1-like chaperonin intermediate domain superfamily JO41_03550 IPR001029 Flagellin, D0/D1 domain JO41_03550 IPR001492 Flagellin JO41_03555 IPR001029 Flagellin, D0/D1 domain JO41_03555 IPR001492 Flagellin JO41_03560 IPR010809 Flagellar hook-associated protein 2, C-terminal JO41_03560 IPR003481 Flagellar hook-associated protein 2, N-terminal JO41_03560 IPR040026 Flagellar hook-associated protein 2 JO41_03575 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta JO41_03575 IPR001986 Enolpyruvate transferase domain JO41_03575 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase JO41_03575 IPR036968 Enolpyruvate transferase domain superfamily JO41_03580 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03580 IPR001650 Helicase, C-terminal JO41_03580 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_03580 IPR007502 Helicase-associated domain JO41_03580 IPR011709 Domain of unknown function DUF1605 JO41_03580 IPR011545 DEAD/DEAH box helicase domain JO41_03580 IPR042035 DEAH helicase, winged-helix domain JO41_03590 IPR024088 Tyrosine-tRNA ligase, bacterial-type JO41_03590 IPR002307 Tyrosine-tRNA ligase JO41_03590 IPR036986 RNA-binding S4 domain superfamily JO41_03590 IPR002942 RNA-binding S4 domain JO41_03590 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_03590 IPR002305 Aminoacyl-tRNA synthetase, class Ic JO41_03590 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_03590 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 JO41_03595 IPR018631 AAA-ATPase-like domain JO41_03595 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_03630 IPR002319 Phenylalanyl-tRNA synthetase JO41_03630 IPR022917 Phenylalanine-tRNA ligase alpha subunit, bacterial/archaeal JO41_03630 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit JO41_03630 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_03635 IPR004268 Peptidoglycan biosynthesis protein MurJ JO41_03655 IPR006127 Periplasmic solute binding protein, ZnuA-like JO41_03655 IPR006128 Adhesion lipoprotein JO41_03655 IPR006129 Adhesin B JO41_03675 IPR033399 Putative outer membrane lipoprotein-sorting protein JO41_03680 IPR011032 GroES-like superfamily JO41_03680 IPR018369 Chaperonin GroES, conserved site JO41_03680 IPR037124 GroES chaperonin superfamily JO41_03680 IPR020818 GroES chaperonin family JO41_03685 IPR007630 RNA polymerase sigma-70 region 4 JO41_03685 IPR014284 RNA polymerase sigma-70 like domain JO41_03685 IPR000943 RNA polymerase sigma-70 JO41_03685 IPR009042 RNA polymerase sigma-70 region 1.2 JO41_03685 IPR007627 RNA polymerase sigma-70 region 2 JO41_03685 IPR007624 RNA polymerase sigma-70 region 3 JO41_03685 IPR013324 RNA polymerase sigma factor, region 3/4-like JO41_03685 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_03685 IPR028630 RNA polymerase sigma factor RpoD JO41_03685 IPR012760 RNA polymerase sigma factor RpoD, C-terminal JO41_03685 IPR013325 RNA polymerase sigma factor, region 2 JO41_03685 IPR007127 RNA polymerase sigma factor 70, region 1.1 JO41_03700 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site JO41_03700 IPR013078 Histidine phosphatase superfamily, clade-1 JO41_03700 IPR029033 Histidine phosphatase superfamily JO41_03700 IPR017578 Alpha-ribazole phosphatase, CobC JO41_03705 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_03705 IPR002942 RNA-binding S4 domain JO41_03705 IPR036986 RNA-binding S4 domain superfamily JO41_03705 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_03705 IPR006225 Pseudouridine synthase, RluC/RluD JO41_03705 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_03710 IPR011268 Purine nucleoside phosphorylase JO41_03710 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific JO41_03710 IPR035994 Nucleoside phosphorylase superfamily JO41_03710 IPR000845 Nucleoside phosphorylase domain JO41_03710 IPR018099 Purine phosphorylase, family 2, conserved site JO41_03720 IPR034739 UvrD/AddA helicase, N-terminal JO41_03720 IPR014016 UvrD-like helicase, ATP-binding domain JO41_03720 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03720 IPR000212 DNA helicase, UvrD/REP type JO41_03720 IPR014017 UvrD-like DNA helicase, C-terminal JO41_03720 IPR013986 DExx box DNA helicase domain superfamily JO41_03720 IPR005751 ATP-dependent DNA helicase PcrA JO41_03760 IPR017154 Uncharacterised conserved protein UCP037246 JO41_03760 IPR003173 Transcriptional coactivator p15 (PC4) JO41_03765 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_03765 IPR003660 HAMP domain JO41_03765 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain JO41_03765 IPR004090 Chemotaxis methyl-accepting receptor JO41_03775 IPR034683 Cytidylyltransferase IspD/TarI JO41_03775 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site JO41_03775 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase JO41_03775 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site JO41_03775 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily JO41_03775 IPR029044 Nucleotide-diphospho-sugar transferases JO41_03780 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily JO41_03780 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site JO41_03780 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase JO41_03800 IPR009057 Homeobox-like domain superfamily JO41_03800 IPR001647 DNA-binding HTH domain, TetR-type JO41_03800 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_03805 IPR013780 Glycosyl hydrolase, all-beta JO41_03805 IPR006047 Glycosyl hydrolase, family 13, catalytic domain JO41_03805 IPR032091 Maltogenic Amylase, C-terminal JO41_03805 IPR014756 Immunoglobulin E-set JO41_03805 IPR013783 Immunoglobulin-like fold JO41_03805 IPR017853 Glycoside hydrolase superfamily JO41_03805 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain JO41_03825 IPR029058 Alpha/Beta hydrolase fold JO41_03825 IPR012354 Esterase/lipase JO41_03825 IPR022742 Serine aminopeptidase, S33 JO41_03830 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ JO41_03830 IPR029069 HotDog domain superfamily JO41_03830 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ JO41_03835 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain JO41_03835 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 JO41_03835 IPR000794 Beta-ketoacyl synthase JO41_03835 IPR018201 Beta-ketoacyl synthase, active site JO41_03835 IPR014030 Beta-ketoacyl synthase, N-terminal JO41_03835 IPR014031 Beta-ketoacyl synthase, C-terminal JO41_03835 IPR016039 Thiolase-like JO41_03840 IPR002347 Short-chain dehydrogenase/reductase SDR JO41_03840 IPR020904 Short-chain dehydrogenase/reductase, conserved site JO41_03840 IPR036291 NAD(P)-binding domain superfamily JO41_03840 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase JO41_03845 IPR014043 Acyl transferase JO41_03845 IPR024925 Malonyl CoA-acyl carrier protein transacylase JO41_03845 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type JO41_03845 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding JO41_03845 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase JO41_03845 IPR001227 Acyl transferase domain superfamily JO41_03850 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal JO41_03850 IPR016039 Thiolase-like JO41_03850 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO41_03850 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 JO41_03855 IPR001650 Helicase, C-terminal JO41_03855 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_03855 IPR014014 RNA helicase, DEAD-box type, Q motif JO41_03855 IPR030880 DEAD-box ATP-dependent RNA helicase CshA JO41_03855 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site JO41_03855 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03855 IPR011545 DEAD/DEAH box helicase domain JO41_03865 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily JO41_03865 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily JO41_03865 IPR019813 Translation initiation factor 3, conserved site JO41_03865 IPR001288 Translation initiation factor 3 JO41_03865 IPR019815 Translation initiation factor 3, C-terminal JO41_03865 IPR019814 Translation initiation factor 3, N-terminal JO41_03870 IPR018265 Ribosomal protein L35, conserved site JO41_03870 IPR021137 Ribosomal protein L35 JO41_03870 IPR037229 Ribosomal protein L35 superfamily JO41_03870 IPR001706 Ribosomal protein L35, non-mitochondrial JO41_03875 IPR005813 Ribosomal protein L20 JO41_03875 IPR035566 Ribosomal protein L20, C-terminal JO41_03885 IPR036192 Cell division protein ZapA-like superfamily JO41_03885 IPR007838 Cell division protein ZapA-like JO41_03890 IPR003791 Protein of unknown function UPF0178 JO41_03895 IPR001789 Signal transduction response regulator, receiver domain JO41_03895 IPR037522 HD-GYP domain JO41_03895 IPR003607 HD/PDEase domain JO41_03895 IPR011006 CheY-like superfamily JO41_03900 IPR001160 Peptidase M20C, Xaa-His dipeptidase JO41_03900 IPR011650 Peptidase M20, dimerisation domain JO41_03900 IPR002933 Peptidase M20 JO41_03905 IPR001463 Sodium:alanine symporter JO41_03910 IPR011053 Single hybrid motif JO41_03910 IPR000891 Pyruvate carboxyltransferase JO41_03910 IPR005776 Oxaloacetate decarboxylase, alpha subunit JO41_03910 IPR003379 Carboxylase, conserved domain JO41_03910 IPR000089 Biotin/lipoyl attachment JO41_03910 IPR001882 Biotin-binding site JO41_03910 IPR013785 Aldolase-type TIM barrel JO41_03915 IPR022956 Beta-hexosaminidase, bacterial JO41_03915 IPR019800 Glycoside hydrolase, family 3, active site JO41_03915 IPR001764 Glycoside hydrolase, family 3, N-terminal JO41_03915 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily JO41_03915 IPR017853 Glycoside hydrolase superfamily JO41_03935 IPR013332 Ketopantoate reductase, N-terminal domain JO41_03935 IPR013752 Ketopantoate reductase, C-terminal domain JO41_03935 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO41_03935 IPR036291 NAD(P)-binding domain superfamily JO41_03935 IPR003710 Ketopantoate reductase ApbA/PanE JO41_03935 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO41_03950 IPR000415 Nitroreductase-like JO41_03950 IPR029479 Nitroreductase JO41_03955 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03955 IPR025302 Domain of unknown function DUF4162 JO41_03955 IPR017871 ABC transporter, conserved site JO41_03955 IPR003439 ABC transporter-like JO41_03955 IPR003593 AAA+ ATPase domain JO41_03975 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_03975 IPR003959 ATPase, AAA-type, core JO41_03975 IPR032423 AAA C-terminal domain JO41_03975 IPR003593 AAA+ ATPase domain JO41_03975 IPR021886 MgsA AAA+ ATPase C-terminal JO41_03975 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal JO41_03985 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel JO41_03985 IPR027385 Outer membrane protein beta-barrel domain JO41_04020 IPR003832 Protein of unknown function DUF212 JO41_04025 IPR001537 tRNA/rRNA methyltransferase, SpoU type JO41_04025 IPR029028 Alpha/beta knot methyltransferases JO41_04025 IPR029064 50S ribosomal protein L30e-like JO41_04025 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO41_04025 IPR004441 RNA methyltransferase TrmH family JO41_04025 IPR013123 RNA 2-O ribose methyltransferase, substrate binding JO41_04040 IPR000878 Tetrapyrrole methylase JO41_04040 IPR035996 Tetrapyrrole methylase superfamily JO41_04040 IPR014777 Tetrapyrrole methylase, subdomain 1 JO41_04040 IPR014776 Tetrapyrrole methylase, subdomain 2 JO41_04040 IPR008189 rRNA small subunit methyltransferase I JO41_04040 IPR018063 SAM-dependent methyltransferase RsmI, conserved site JO41_04050 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family JO41_04050 IPR027051 XdhC Rossmann domain JO41_04050 IPR003777 XdhC- CoxI JO41_04065 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04065 IPR003593 AAA+ ATPase domain JO41_04065 IPR003439 ABC transporter-like JO41_04070 IPR013976 Metal-dependent hydrolase HDOD JO41_04080 IPR017927 FAD-binding domain, ferredoxin reductase-type JO41_04080 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit JO41_04080 IPR017938 Riboflavin synthase-like beta-barrel JO41_04080 IPR001433 Oxidoreductase FAD/NAD(P)-binding JO41_04080 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO41_04080 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain JO41_04080 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain JO41_04085 IPR028261 Dihydroprymidine dehydrogenase domain II JO41_04085 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_04085 IPR023753 FAD/NAD(P)-binding domain JO41_04085 IPR009051 Alpha-helical ferredoxin JO41_04085 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 JO41_04090 IPR018176 Tryptophanase, conserved site JO41_04090 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_04090 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_04090 IPR015424 Pyridoxal phosphate-dependent transferase JO41_04090 IPR011166 Beta-eliminating lyase family JO41_04090 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase JO41_04090 IPR013440 Tryptophanase JO41_04095 IPR037272 Sodium:neurotransmitter symporter superfamily JO41_04095 IPR000175 Sodium:neurotransmitter symporter JO41_04105 IPR028082 Periplasmic binding protein-like I JO41_04105 IPR003760 ABC transporter substrate-binding protein PnrA-like JO41_04110 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG JO41_04110 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04110 IPR003593 AAA+ ATPase domain JO41_04110 IPR017871 ABC transporter, conserved site JO41_04110 IPR003439 ABC transporter-like JO41_04115 IPR001851 ABC transporter, permease JO41_04125 IPR021804 Protein of unknown function DUF3375 JO41_04145 IPR003812 Fido domain JO41_04145 IPR036597 Fido-like domain superfamily JO41_04145 IPR040198 Fido domain-containing protein JO41_04145 IPR010093 SinI-like, DNA-binding domain JO41_04145 IPR041657 Helix-turn-helix domain, group 17 JO41_04155 IPR006206 Mevalonate/galactokinase JO41_04155 IPR006203 GHMP kinase, ATP-binding, conserved site JO41_04155 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_04155 IPR000705 Galactokinase JO41_04155 IPR022963 Galactokinase, bacterial JO41_04155 IPR019741 Galactokinase, conserved site JO41_04155 IPR019539 Galactokinase galactose-binding domain JO41_04155 IPR013750 GHMP kinase, C-terminal domain JO41_04155 IPR036554 GHMP kinase, C-terminal domain superfamily JO41_04155 IPR006204 GHMP kinase N-terminal domain JO41_04155 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_04160 IPR036318 FAD-binding, type PCMH-like superfamily JO41_04160 IPR005170 Transporter-associated domain JO41_04160 IPR000644 CBS domain JO41_04160 IPR002550 CNNM, transmembrane domain JO41_04160 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_04180 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein JO41_04180 IPR006059 Bacterial extracellular solute-binding protein JO41_04185 IPR003593 AAA+ ATPase domain JO41_04185 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04185 IPR018368 ClpA/B, conserved site 1 JO41_04185 IPR028299 ClpA/B, conserved site 2 JO41_04185 IPR041546 ClpA/ClpB, AAA lid domain JO41_04185 IPR004176 Clp, N-terminal JO41_04185 IPR036628 Clp, N-terminal domain superfamily JO41_04185 IPR019489 Clp ATPase, C-terminal JO41_04185 IPR017730 Chaperonin ClpB JO41_04185 IPR001270 ClpA/B family JO41_04185 IPR003959 ATPase, AAA-type, core JO41_04200 IPR036986 RNA-binding S4 domain superfamily JO41_04200 IPR002942 RNA-binding S4 domain JO41_04200 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_04200 IPR006225 Pseudouridine synthase, RluC/RluD JO41_04200 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_04200 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_04210 IPR000620 EamA domain JO41_04215 IPR013766 Thioredoxin domain JO41_04215 IPR019479 Peroxiredoxin, C-terminal JO41_04215 IPR022915 Peroxiredoxin, TDXH subfamily JO41_04215 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant JO41_04215 IPR024706 Peroxiredoxin, AhpC-type JO41_04215 IPR036249 Thioredoxin-like superfamily JO41_04220 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase JO41_04220 IPR002933 Peptidase M20 JO41_04220 IPR011650 Peptidase M20, dimerisation domain JO41_04220 IPR036264 Bacterial exopeptidase dimerisation domain JO41_04230 IPR001387 Cro/C1-type helix-turn-helix domain JO41_04230 IPR013430 Toxin-antitoxin system, antidote protein, HigA JO41_04230 IPR010982 Lambda repressor-like, DNA-binding domain superfamily JO41_04260 IPR008928 Six-hairpin glycosidase superfamily JO41_04260 IPR001661 Glycoside hydrolase, family 37 JO41_04260 IPR012341 Six-hairpin glycosidase-like superfamily JO41_04265 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic JO41_04265 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E JO41_04265 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit JO41_04265 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like JO41_04265 IPR018027 Asn/Gln amidotransferase JO41_04265 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 JO41_04265 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 JO41_04265 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain JO41_04265 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site JO41_04295 IPR004447 C-terminal-processing peptidase S41A JO41_04295 IPR002477 Peptidoglycan binding-like JO41_04295 IPR036365 PGBD-like superfamily JO41_04295 IPR036366 PGBD superfamily JO41_04295 IPR005151 Tail specific protease JO41_04295 IPR029045 ClpP/crotonase-like domain superfamily JO41_04295 IPR001478 PDZ domain JO41_04295 IPR041489 PDZ domain 6 JO41_04295 IPR036034 PDZ superfamily JO41_04300 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO41_04300 IPR029028 Alpha/beta knot methyltransferases JO41_04300 IPR015947 PUA-like superfamily JO41_04300 IPR006700 Ribosomal RNA small subunit methyltransferase E JO41_04310 IPR002575 Aminoglycoside phosphotransferase JO41_04310 IPR011009 Protein kinase-like domain superfamily JO41_04310 IPR009212 Methylthioribose kinase JO41_04350 IPR036373 Ribosomal protein L17 superfamily JO41_04350 IPR000456 Ribosomal protein L17 JO41_04355 IPR011262 DNA-directed RNA polymerase, insert domain JO41_04355 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type JO41_04355 IPR011773 DNA-directed RNA polymerase, alpha subunit JO41_04355 IPR036603 RNA polymerase, RBP11-like subunit JO41_04355 IPR011260 RNA polymerase, alpha subunit, C-terminal JO41_04355 IPR036643 DNA-directed RNA polymerase, insert domain superfamily JO41_04360 IPR001971 Ribosomal protein S11 JO41_04360 IPR018102 Ribosomal S11, conserved site JO41_04360 IPR036967 Ribosomal protein S11 superfamily JO41_04360 IPR019981 Ribosomal protein S11, bacterial-type JO41_04365 IPR001892 Ribosomal protein S13 JO41_04365 IPR010979 Ribosomal protein S13-like, H2TH JO41_04365 IPR019980 Ribosomal protein S13, bacterial-type JO41_04365 IPR018269 Ribosomal protein S13, conserved site JO41_04365 IPR027437 30s ribosomal protein S13, C-terminal JO41_04370 IPR000473 Ribosomal protein L36 JO41_04370 IPR035977 Ribosomal protein L36 superfamily JO41_04375 IPR026593 Protein translocase subunit SecY JO41_04375 IPR002208 SecY/SEC61-alpha family JO41_04375 IPR030659 SecY conserved site JO41_04375 IPR023201 SecY domain superfamily JO41_04380 IPR001196 Ribosomal protein L15, conserved site JO41_04380 IPR005749 Ribosomal protein L15, bacterial-type JO41_04380 IPR036227 Ribosomal L18e/L15P superfamily JO41_04380 IPR030878 Ribosomal protein L15 JO41_04380 IPR021131 Ribosomal protein L18e/L15P JO41_04385 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily JO41_04385 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain JO41_04385 IPR018038 Ribosomal protein L30, conserved site JO41_04385 IPR005996 Ribosomal protein L30, bacterial-type JO41_04390 IPR000851 Ribosomal protein S5 JO41_04390 IPR005712 Ribosomal protein S5, bacterial-type JO41_04390 IPR018192 Ribosomal protein S5, N-terminal, conserved site JO41_04390 IPR005324 Ribosomal protein S5, C-terminal JO41_04390 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_04390 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_04390 IPR013810 Ribosomal protein S5, N-terminal JO41_04395 IPR005484 Ribosomal protein L18 JO41_04395 IPR004389 Ribosomal protein L18, bacterial-type JO41_04400 IPR019906 Ribosomal protein L6, bacterial-type JO41_04400 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily JO41_04400 IPR002358 Ribosomal protein L6, conserved site JO41_04400 IPR000702 Ribosomal protein L6 JO41_04400 IPR020040 Ribosomal protein L6, alpha-beta domain JO41_04405 IPR035987 Ribosomal protein S8 superfamily JO41_04405 IPR000630 Ribosomal protein S8 JO41_04410 IPR031309 Ribosomal protein L5, C-terminal JO41_04410 IPR020929 Ribosomal protein L5, conserved site JO41_04410 IPR022803 Ribosomal protein L5 domain superfamily JO41_04410 IPR002132 Ribosomal protein L5 JO41_04410 IPR020930 Ribosomal protein L5, bacterial-type JO41_04410 IPR031310 Ribosomal protein L5, N-terminal JO41_04415 IPR005824 KOW JO41_04415 IPR041988 Ribosomal Protein L26/L24, KOW domain JO41_04415 IPR003256 Ribosomal protein L24 JO41_04415 IPR014722 Ribosomal protein L2, domain 2 JO41_04415 IPR005825 Ribosomal protein L24/L26, conserved site JO41_04415 IPR008991 Translation protein SH3-like domain superfamily JO41_04420 IPR019972 Ribosomal protein L14P, conserved site JO41_04420 IPR036853 Ribosomal protein L14 superfamily JO41_04420 IPR000218 Ribosomal protein L14P JO41_04420 IPR005745 Ribosomal protein L14P, bacterial-type JO41_04425 IPR019979 Ribosomal protein S17, conserved site JO41_04425 IPR019984 30S ribosomal protein S17 JO41_04425 IPR012340 Nucleic acid-binding, OB-fold JO41_04425 IPR000266 Ribosomal protein S17/S11 JO41_04430 IPR001854 Ribosomal protein L29/L35 JO41_04430 IPR036049 Ribosomal protein L29/L35 superfamily JO41_04435 IPR036920 Ribosomal protein L10e/L16 superfamily JO41_04435 IPR016180 Ribosomal protein L10e/L16 JO41_04435 IPR020798 Ribosomal protein L16, conserved site JO41_04435 IPR000114 Ribosomal protein L16 JO41_04440 IPR004087 K Homology domain JO41_04440 IPR005704 Ribosomal protein S3, bacterial-type JO41_04440 IPR004044 K Homology domain, type 2 JO41_04440 IPR009019 K homology domain superfamily, prokaryotic type JO41_04440 IPR001351 Ribosomal protein S3, C-terminal JO41_04440 IPR036419 Ribosomal protein S3, C-terminal domain superfamily JO41_04440 IPR018280 Ribosomal protein S3, conserved site JO41_04440 IPR015946 K homology domain-like, alpha/beta JO41_04445 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type JO41_04445 IPR036394 Ribosomal protein L22/L17 superfamily JO41_04445 IPR018260 Ribosomal protein L22/L17, conserved site JO41_04445 IPR001063 Ribosomal protein L22/L17 JO41_04450 IPR020934 Ribosomal protein S19 conserved site JO41_04450 IPR023575 Ribosomal protein S19, superfamily JO41_04450 IPR005732 Ribosomal protein S19, bacterial-type JO41_04450 IPR002222 Ribosomal protein S19/S15 JO41_04455 IPR002171 Ribosomal protein L2 JO41_04455 IPR012340 Nucleic acid-binding, OB-fold JO41_04455 IPR022666 Ribosomal Proteins L2, RNA binding domain JO41_04455 IPR014722 Ribosomal protein L2, domain 2 JO41_04455 IPR005880 Ribosomal protein L2, bacterial/organellar-type JO41_04455 IPR022669 Ribosomal protein L2, C-terminal JO41_04455 IPR014726 Ribosomal protein L2, domain 3 JO41_04455 IPR008991 Translation protein SH3-like domain superfamily JO41_04460 IPR012678 Ribosomal protein L23/L15e core domain superfamily JO41_04460 IPR001014 Ribosomal protein L23/L25, conserved site JO41_04460 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily JO41_04460 IPR013025 Ribosomal protein L25/L23 JO41_04465 IPR023574 Ribosomal protein L4 domain superfamily JO41_04465 IPR002136 Ribosomal protein L4/L1e JO41_04465 IPR013005 50S ribosomal protein uL4 JO41_04470 IPR000597 Ribosomal protein L3 JO41_04470 IPR019927 Ribosomal protein L3, bacterial/organelle-type JO41_04470 IPR019926 Ribosomal protein L3, conserved site JO41_04470 IPR009000 Translation protein, beta-barrel domain superfamily JO41_04475 IPR001848 Ribosomal protein S10 JO41_04475 IPR027486 Ribosomal protein S10 domain JO41_04475 IPR036838 Ribosomal protein S10 domain superfamily JO41_04475 IPR018268 Ribosomal protein S10, conserved site JO41_04480 IPR031157 Tr-type G domain, conserved site JO41_04480 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal JO41_04480 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal JO41_04480 IPR009000 Translation protein, beta-barrel domain superfamily JO41_04480 IPR000795 Transcription factor, GTP-binding domain JO41_04480 IPR005225 Small GTP-binding protein domain JO41_04480 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04480 IPR033720 Elongation factor Tu, domain 2 JO41_04480 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_04480 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain JO41_04480 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle JO41_04500 IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic JO41_04500 IPR009061 Putative DNA-binding domain superfamily JO41_04500 IPR022918 Phenylalanine-tRNA ligase beta chain 2, bacterial/archaeal JO41_04500 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 JO41_04500 IPR005147 tRNA synthetase, B5-domain JO41_04500 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain JO41_04500 IPR005146 B3/B4 tRNA-binding domain JO41_04520 IPR003824 Undecaprenyl-diphosphatase UppP JO41_04525 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_04525 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04525 IPR018541 FtsK gamma domain JO41_04525 IPR002543 FtsK domain JO41_04525 IPR036390 Winged helix DNA-binding domain superfamily JO41_04525 IPR041027 FtsK alpha domain JO41_04525 IPR003593 AAA+ ATPase domain JO41_04540 IPR035926 NusB-like superfamily JO41_04540 IPR011605 NusB antitermination factor JO41_04540 IPR006027 NusB/RsmB/TIM44 JO41_04545 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type JO41_04545 IPR027304 Trigger factor/SurA domain superfamily JO41_04555 IPR015991 Uncharacterised hydrolase TatD-type JO41_04555 IPR001130 TatD family JO41_04555 IPR018228 Deoxyribonuclease, TatD-related, conserved site JO41_04555 IPR032466 Metal-dependent hydrolase JO41_04565 IPR009009 RlpA-like protein, double-psi beta-barrel domain JO41_04565 IPR034718 Endolytic peptidoglycan transglycosylase RlpA JO41_04565 IPR036908 RlpA-like domain superfamily JO41_04565 IPR012997 Rare lipoprotein A JO41_04615 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04615 IPR041628 ChlI/MoxR, AAA lid domain JO41_04615 IPR011703 ATPase, AAA-3 JO41_04655 IPR008912 Uncharacterised protein family CoxE-like JO41_04655 IPR023481 Uncharacterised protein family ViaA JO41_04655 IPR002035 von Willebrand factor, type A JO41_04655 IPR036465 von Willebrand factor A-like domain superfamily JO41_04660 IPR014152 DNA helicase subunit AddA JO41_04660 IPR011604 Exonuclease, phage-type/RecB, C-terminal JO41_04660 IPR034739 UvrD/AddA helicase, N-terminal JO41_04660 IPR014016 UvrD-like helicase, ATP-binding domain JO41_04660 IPR011335 Restriction endonuclease type II-like JO41_04660 IPR000212 DNA helicase, UvrD/REP type JO41_04660 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type JO41_04660 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04660 IPR014017 UvrD-like DNA helicase, C-terminal JO41_04665 IPR041682 AAA domain, group 14 JO41_04665 IPR025420 Domain of unknown function DUF4143 JO41_04665 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04675 IPR003593 AAA+ ATPase domain JO41_04675 IPR001957 Chromosomal replication control, initiator DnaA JO41_04675 IPR018312 Chromosomal replication control, initiator DnaA, conserved site JO41_04675 IPR013317 Chromosomal replication initiator protein DnaA JO41_04675 IPR013159 Chromosomal replication initiator, DnaA C-terminal JO41_04675 IPR024633 DnaA N-terminal domain JO41_04675 IPR038454 DnaA, N-terminal domain superfamily JO41_04675 IPR010921 Trp repressor/replication initiator JO41_04675 IPR020591 Chromosomal replication control, initiator DnaA-like JO41_04675 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04680 IPR006059 Bacterial extracellular solute-binding protein JO41_04680 IPR017637 Putative 2-aminoethylphosphonate binding protein, ABC transporter JO41_04685 IPR017871 ABC transporter, conserved site JO41_04685 IPR008995 Molybdate/tungstate binding, C-terminal JO41_04685 IPR013611 Transport-associated OB, type 2 JO41_04685 IPR015853 ABC transporter, ferric cation import, FbpC JO41_04685 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04685 IPR003439 ABC transporter-like JO41_04685 IPR003593 AAA+ ATPase domain JO41_04690 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_04690 IPR035906 MetI-like superfamily JO41_04695 IPR017871 ABC transporter, conserved site JO41_04695 IPR008995 Molybdate/tungstate binding, C-terminal JO41_04695 IPR003439 ABC transporter-like JO41_04695 IPR003593 AAA+ ATPase domain JO41_04695 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04695 IPR040582 MalK, OB fold domain JO41_04695 IPR005116 Transport-associated OB, type 1 JO41_04705 IPR027619 Putative C-S lyase JO41_04705 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_04705 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_04705 IPR004839 Aminotransferase, class I/classII JO41_04705 IPR015424 Pyridoxal phosphate-dependent transferase JO41_04710 IPR000060 BCCT transporter family JO41_04710 IPR023449 L-carnitine/gamma-butyrobetaine antiporter CaiT JO41_04710 IPR018093 BCCT transporter, conserved site JO41_04715 IPR017189 CTP:phosphocholine cytidylyltransferase JO41_04715 IPR029044 Nucleotide-diphospho-sugar transferases JO41_04715 IPR025877 MobA-like NTP transferase JO41_04720 IPR018043 Sodium:galactoside symporter, conserved site JO41_04720 IPR039672 Lactose permease-like JO41_04720 IPR036259 MFS transporter superfamily JO41_04720 IPR001927 Sodium:galactoside symporter JO41_04730 IPR003385 Glycoside hydrolase, family 77 JO41_04730 IPR017853 Glycoside hydrolase superfamily JO41_04740 IPR002068 Alpha crystallin/Hsp20 domain JO41_04740 IPR008978 HSP20-like chaperone JO41_04750 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal JO41_04750 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site JO41_04750 IPR002986 Diaminopimelate decarboxylase, LysA JO41_04750 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal JO41_04750 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal JO41_04750 IPR029066 PLP-binding barrel JO41_04750 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site JO41_04750 IPR000183 Ornithine/DAP/Arg decarboxylase JO41_04755 IPR001226 Flavodoxin, conserved site JO41_04755 IPR008254 Flavodoxin/nitric oxide synthase JO41_04755 IPR010087 Flavodoxin, short chain JO41_04755 IPR029039 Flavoprotein-like superfamily JO41_04765 IPR000614 Free Met sulfoxide reductase conserved site JO41_04765 IPR003018 GAF domain JO41_04765 IPR029016 GAF-like domain superfamily JO41_04775 IPR011545 DEAD/DEAH box helicase domain JO41_04775 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_04775 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04775 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain JO41_04775 IPR038475 RecG, C-terminal domain superfamily JO41_04775 IPR012340 Nucleic acid-binding, OB-fold JO41_04775 IPR033454 RecG, wedge domain JO41_04780 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain JO41_04780 IPR006143 RND efflux pump, membrane fusion protein JO41_04785 IPR003593 AAA+ ATPase domain JO41_04785 IPR017871 ABC transporter, conserved site JO41_04785 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04785 IPR003439 ABC transporter-like JO41_04790 IPR025857 MacB-like periplasmic core domain JO41_04790 IPR017871 ABC transporter, conserved site JO41_04790 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04790 IPR003439 ABC transporter-like JO41_04790 IPR003838 ABC transporter permease protein domain JO41_04790 IPR003593 AAA+ ATPase domain JO41_04790 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO41_04795 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO41_04795 IPR017871 ABC transporter, conserved site JO41_04795 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04795 IPR003593 AAA+ ATPase domain JO41_04795 IPR003838 ABC transporter permease protein domain JO41_04795 IPR003439 ABC transporter-like JO41_04795 IPR025857 MacB-like periplasmic core domain JO41_04830 IPR009078 Ferritin-like superfamily JO41_04830 IPR030475 Ribonucleotide reductase small subunit, acitve site JO41_04830 IPR033909 Ribonucleotide reductase small subunit JO41_04830 IPR012348 Ribonucleotide reductase-like JO41_04830 IPR000358 Ribonucleotide reductase small subunit family JO41_04835 IPR002528 Multi antimicrobial extrusion protein JO41_04840 IPR003439 ABC transporter-like JO41_04840 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_04840 IPR011527 ABC transporter type 1, transmembrane domain JO41_04840 IPR003593 AAA+ ATPase domain JO41_04840 IPR017871 ABC transporter, conserved site JO41_04840 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04840 IPR039421 Type I protein exporter JO41_04845 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily JO41_04845 IPR009614 Toxin YoeB JO41_04900 IPR001034 DeoR-type HTH domain JO41_04900 IPR013196 Helix-turn-helix, type 11 JO41_04900 IPR026881 WYL domain JO41_04900 IPR036390 Winged helix DNA-binding domain superfamily JO41_04900 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_04900 IPR028349 Protein PafC JO41_04910 IPR011527 ABC transporter type 1, transmembrane domain JO41_04910 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_04910 IPR003593 AAA+ ATPase domain JO41_04910 IPR003439 ABC transporter-like JO41_04910 IPR017871 ABC transporter, conserved site JO41_04910 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04910 IPR039421 Type I protein exporter JO41_04915 IPR015942 Asp/Glu/hydantoin racemase JO41_04915 IPR004391 Glutamate racemase JO41_04915 IPR018187 Asp/Glu racemase, active site 1 JO41_04915 IPR001920 Asp/Glu racemase JO41_04920 IPR004881 Ribosome biogenesis GTPase RsgA JO41_04920 IPR010914 RsgA GTPase domain JO41_04920 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain JO41_04920 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04925 IPR009057 Homeobox-like domain superfamily JO41_04925 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal JO41_04925 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_04925 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_04925 IPR001647 DNA-binding HTH domain, TetR-type JO41_04940 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04940 IPR017871 ABC transporter, conserved site JO41_04940 IPR003439 ABC transporter-like JO41_04940 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_04940 IPR011527 ABC transporter type 1, transmembrane domain JO41_04940 IPR039421 Type I protein exporter JO41_04940 IPR003593 AAA+ ATPase domain JO41_04945 IPR003593 AAA+ ATPase domain JO41_04945 IPR011527 ABC transporter type 1, transmembrane domain JO41_04945 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_04945 IPR003439 ABC transporter-like JO41_04945 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04945 IPR039421 Type I protein exporter JO41_04950 IPR017871 ABC transporter, conserved site JO41_04950 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04950 IPR003439 ABC transporter-like JO41_04950 IPR003593 AAA+ ATPase domain JO41_04970 IPR003593 AAA+ ATPase domain JO41_04970 IPR011527 ABC transporter type 1, transmembrane domain JO41_04970 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_04970 IPR003439 ABC transporter-like JO41_04970 IPR017871 ABC transporter, conserved site JO41_04970 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_04970 IPR039421 Type I protein exporter JO41_04975 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_04975 IPR018631 AAA-ATPase-like domain JO41_04995 IPR017969 Heavy-metal-associated, conserved site JO41_04995 IPR006121 Heavy metal-associated domain, HMA JO41_04995 IPR036163 Heavy metal-associated domain superfamily JO41_04995 IPR027256 P-type ATPase, subfamily IB JO41_04995 IPR001757 P-type ATPase JO41_04995 IPR036412 HAD-like superfamily JO41_04995 IPR023214 HAD superfamily JO41_04995 IPR018303 P-type ATPase, phosphorylation site JO41_04995 IPR023298 P-type ATPase, transmembrane domain superfamily JO41_04995 IPR023299 P-type ATPase, cytoplasmic domain N JO41_04995 IPR008250 P-type ATPase, A domain superfamily JO41_05005 IPR001845 HTH ArsR-type DNA-binding domain JO41_05005 IPR018334 ArsR-type transcription regulator, HTH motif JO41_05005 IPR011991 ArsR-like helix-turn-helix domain JO41_05005 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_05005 IPR036390 Winged helix DNA-binding domain superfamily JO41_05010 IPR010280 (Uracil-5)-methyltransferase family JO41_05010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_05010 IPR012340 Nucleic acid-binding, OB-fold JO41_05010 IPR030390 RNA methyltransferase TrmA, active site JO41_05030 IPR017609 Xanthine dehydrogenase D subunit JO41_05030 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding JO41_05030 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily JO41_05030 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead JO41_05030 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily JO41_05035 IPR037196 HSP90, C-terminal domain JO41_05035 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_05035 IPR019805 Heat shock protein Hsp90, conserved site JO41_05035 IPR001404 Heat shock protein Hsp90 family JO41_05035 IPR020575 Heat shock protein Hsp90, N-terminal JO41_05035 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_05040 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 JO41_05040 IPR041706 YchF, N-terminal JO41_05040 IPR013029 YchF, C-terminal domain JO41_05040 IPR023192 TGS-like domain superfamily JO41_05040 IPR012676 TGS-like JO41_05040 IPR012675 Beta-grasp domain superfamily JO41_05040 IPR004095 TGS JO41_05040 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05040 IPR006073 GTP binding domain JO41_05040 IPR031167 OBG-type guanine nucleotide-binding (G) domain JO41_05045 IPR003029 S1 domain JO41_05045 IPR023323 Tex-like domain superfamily JO41_05045 IPR010994 RuvA domain 2-like JO41_05045 IPR012337 Ribonuclease H-like superfamily JO41_05045 IPR012340 Nucleic acid-binding, OB-fold JO41_05045 IPR023319 Tex-like protein, HTH domain superfamily JO41_05045 IPR022967 RNA-binding domain, S1 JO41_05045 IPR032639 Tex protein, YqgF-like domain JO41_05045 IPR006641 YqgF/RNase H-like domain JO41_05045 IPR041692 HHH domain 9 JO41_05045 IPR037027 YqgF/RNase H-like domain superfamily JO41_05045 IPR018974 Tex-like protein, N-terminal JO41_05060 IPR000924 Glutamyl/glutaminyl-tRNA synthetase JO41_05060 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial JO41_05060 IPR033910 Glutamyl-tRNA synthetase JO41_05060 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain JO41_05060 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 JO41_05060 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding JO41_05060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_05065 IPR033731 Glycyl-tRNA synthetase-like core domain JO41_05065 IPR036621 Anticodon-binding domain superfamily JO41_05065 IPR002315 Glycyl-tRNA synthetase JO41_05065 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 JO41_05065 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_05065 IPR022961 Glycine-tRNA ligase, bacterial JO41_05065 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO41_05065 IPR004154 Anticodon-binding JO41_05075 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily JO41_05075 IPR030395 Glycerophosphodiester phosphodiesterase domain JO41_05080 IPR003848 Domain of unknown function DUF218 JO41_05110 IPR036652 YjeF N-terminal domain superfamily JO41_05110 IPR004443 YjeF N-terminal domain JO41_05110 IPR029056 Ribokinase-like JO41_05110 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr JO41_05110 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase JO41_05110 IPR017953 Carbohydrate kinase, predicted, conserved site JO41_05120 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_05120 IPR000241 Putative RNA methylase domain JO41_05120 IPR004114 THUMP domain JO41_05120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_05125 IPR005524 Predicted permease DUF318 JO41_05145 IPR000394 RNA polymerase sigma factor 54 JO41_05145 IPR007046 RNA polymerase sigma factor 54, core-binding domain JO41_05145 IPR007634 RNA polymerase sigma factor 54, DNA-binding JO41_05145 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily JO41_05200 IPR001455 TusA-like domain JO41_05200 IPR036868 TusA-like domain superfamily JO41_05210 IPR036676 PurM-like, C-terminal domain superfamily JO41_05210 IPR010918 PurM-like, C-terminal domain JO41_05210 IPR016188 PurM-like, N-terminal domain JO41_05210 IPR036921 PurM-like, N-terminal domain superfamily JO41_05210 IPR023061 Selenophosphate synthetase, class I JO41_05210 IPR004536 Selenophosphate synthetase JO41_05225 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain JO41_05225 IPR001296 Glycosyl transferase, family 1 JO41_05230 IPR003439 ABC transporter-like JO41_05230 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05230 IPR032781 ABC-transporter extension domain JO41_05230 IPR003593 AAA+ ATPase domain JO41_05250 IPR033479 Double Cache domain 1 JO41_05250 IPR029151 Periplasmic sensor-like domain superfamily JO41_05250 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_05250 IPR003660 HAMP domain JO41_05260 IPR036005 Creatinase/aminopeptidase-like JO41_05260 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 JO41_05260 IPR000994 Peptidase M24 JO41_05260 IPR001714 Peptidase M24, methionine aminopeptidase JO41_05265 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO41_05265 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO41_05265 IPR008971 HSP40/DnaJ peptide-binding JO41_05265 IPR012724 Chaperone DnaJ JO41_05265 IPR018253 DnaJ domain, conserved site JO41_05265 IPR001623 DnaJ domain JO41_05265 IPR002939 Chaperone DnaJ, C-terminal JO41_05265 IPR036869 Chaperone J-domain superfamily JO41_05285 IPR000160 GGDEF domain JO41_05285 IPR029787 Nucleotide cyclase JO41_05285 IPR033424 Membrane-associated sensor domain JO41_05290 IPR001633 EAL domain JO41_05290 IPR035919 EAL domain superfamily JO41_05290 IPR035965 PAS domain superfamily JO41_05290 IPR000160 GGDEF domain JO41_05290 IPR000014 PAS domain JO41_05290 IPR029787 Nucleotide cyclase JO41_05295 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal JO41_05310 IPR019043 Restriction endonuclease, type II, HindIII JO41_05310 IPR038373 Restriction endonuclease, type II, HindIII superfamily JO41_05315 IPR002941 DNA methylase N-4/N-6 JO41_05315 IPR001091 Restriction/modification DNA-methylase JO41_05315 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_05385 IPR036526 Carbon-nitrogen hydrolase superfamily JO41_05385 IPR003010 Carbon-nitrogen hydrolase JO41_05410 IPR020007 N-acetylneuraminate synthase JO41_05410 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal JO41_05410 IPR013785 Aldolase-type TIM barrel JO41_05410 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily JO41_05410 IPR013974 SAF domain JO41_05410 IPR013132 N-acetylneuraminic acid synthase, N-terminal JO41_05415 IPR022637 DNA polymerase III, beta sliding clamp, central JO41_05415 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal JO41_05415 IPR001001 DNA polymerase III, beta sliding clamp JO41_05415 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal JO41_05440 IPR008991 Translation protein SH3-like domain superfamily JO41_05440 IPR011768 Translation elongation factor P JO41_05440 IPR001059 Translation elongation factor P/YeiP, central JO41_05440 IPR013185 Translation elongation factor, KOW-like JO41_05440 IPR020599 Translation elongation factor P/YeiP JO41_05440 IPR014722 Ribosomal protein L2, domain 2 JO41_05440 IPR015365 Elongation factor P, C-terminal JO41_05440 IPR012340 Nucleic acid-binding, OB-fold JO41_05450 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain JO41_05450 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal JO41_05450 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily JO41_05455 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase JO41_05455 IPR000462 CDP-alcohol phosphatidyltransferase JO41_05490 IPR010058 Uridine phosphorylase JO41_05490 IPR000845 Nucleoside phosphorylase domain JO41_05490 IPR018016 Nucleoside phosphorylase, conserved site JO41_05490 IPR035994 Nucleoside phosphorylase superfamily JO41_05495 IPR011055 Duplicated hybrid motif JO41_05495 IPR016047 Peptidase M23 JO41_05500 IPR015956 Penicillin-binding protein, C-terminal domain superfamily JO41_05500 IPR012338 Beta-lactamase/transpeptidase-like JO41_05500 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A JO41_05500 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal JO41_05500 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily JO41_05500 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal JO41_05505 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB JO41_05505 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO41_05505 IPR005839 Methylthiotransferase JO41_05505 IPR020612 Methylthiotransferase, conserved site JO41_05505 IPR013848 Methylthiotransferase, N-terminal JO41_05505 IPR002792 TRAM domain JO41_05505 IPR023404 Radical SAM, alpha/beta horseshoe JO41_05505 IPR007197 Radical SAM JO41_05505 IPR006638 Elp3/MiaB/NifB JO41_05515 IPR007730 Sporulation-like domain JO41_05520 IPR012338 Beta-lactamase/transpeptidase-like JO41_05520 IPR001466 Beta-lactamase-related JO41_05525 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO41_05525 IPR001279 Metallo-beta-lactamase JO41_05595 IPR001911 Ribosomal protein S21 JO41_05595 IPR018278 Ribosomal protein S21, conserved site JO41_05595 IPR038380 Ribosomal protein S21 superfamily JO41_05620 IPR004450 Threonine synthase-like JO41_05620 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site JO41_05620 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme JO41_05620 IPR001926 Pyridoxal-phosphate dependent enzyme JO41_05620 IPR037158 Threonine synthase, N-terminal domain superfamily JO41_05620 IPR029144 Threonine synthase, N-terminal JO41_05650 IPR013647 Oligopeptidase F, N-terminal domain JO41_05650 IPR042088 Oligoendopeptidase F, C-terminal domain JO41_05650 IPR001567 Peptidase M3A/M3B catalytic domain JO41_05650 IPR004438 Peptidase M3B, oligoendopeptidase F JO41_05675 IPR002078 RNA polymerase sigma factor 54 interaction domain JO41_05675 IPR009057 Homeobox-like domain superfamily JO41_05675 IPR003593 AAA+ ATPase domain JO41_05675 IPR011006 CheY-like superfamily JO41_05675 IPR001789 Signal transduction response regulator, receiver domain JO41_05675 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05675 IPR002197 DNA binding HTH domain, Fis-type JO41_05675 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO41_05675 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO41_05675 IPR025944 Sigma-54 interaction domain, conserved site JO41_05685 IPR002347 Short-chain dehydrogenase/reductase SDR JO41_05685 IPR036291 NAD(P)-binding domain superfamily JO41_05695 IPR013785 Aldolase-type TIM barrel JO41_05695 IPR000644 CBS domain JO41_05695 IPR005990 Inosine-5'-monophosphate dehydrogenase JO41_05695 IPR015875 IMP dehydrogenase / GMP reductase, conserved site JO41_05695 IPR001093 IMP dehydrogenase/GMP reductase JO41_05700 IPR035966 Phosphofructokinase superfamily JO41_05700 IPR022953 ATP-dependent 6-phosphofructokinase JO41_05700 IPR000023 Phosphofructokinase domain JO41_05700 IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108-type JO41_05710 IPR008995 Molybdate/tungstate binding, C-terminal JO41_05710 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05710 IPR003439 ABC transporter-like JO41_05710 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA JO41_05710 IPR003593 AAA+ ATPase domain JO41_05710 IPR017871 ABC transporter, conserved site JO41_05710 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit JO41_05710 IPR013611 Transport-associated OB, type 2 JO41_05715 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_05715 IPR035906 MetI-like superfamily JO41_05720 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_05720 IPR035906 MetI-like superfamily JO41_05735 IPR015884 Malic enzyme, conserved site JO41_05735 IPR012301 Malic enzyme, N-terminal domain JO41_05735 IPR012302 Malic enzyme, NAD-binding JO41_05735 IPR037062 Malic enzyme, N-terminal domain superfamily JO41_05735 IPR036291 NAD(P)-binding domain superfamily JO41_05735 IPR001891 Malic oxidoreductase JO41_05750 IPR003593 AAA+ ATPase domain JO41_05750 IPR003439 ABC transporter-like JO41_05750 IPR017871 ABC transporter, conserved site JO41_05750 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05795 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site JO41_05795 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type JO41_05795 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type JO41_05795 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_05795 IPR004839 Aminotransferase, class I/classII JO41_05795 IPR015424 Pyridoxal phosphate-dependent transferase JO41_05795 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_05800 IPR036291 NAD(P)-binding domain superfamily JO41_05800 IPR001509 NAD-dependent epimerase/dehydratase JO41_05810 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_05810 IPR004821 Cytidyltransferase-like domain JO41_05810 IPR001980 Phosphopantetheine adenylyltransferase JO41_05820 IPR000559 Formate-tetrahydrofolate ligase, FTHFS JO41_05820 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site JO41_05820 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05825 IPR004685 Branched-chain amino acid transport system II carrier protein JO41_05830 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_05830 IPR003660 HAMP domain JO41_05830 IPR033479 Double Cache domain 1 JO41_05830 IPR029151 Periplasmic sensor-like domain superfamily JO41_05835 IPR018392 LysM domain JO41_05835 IPR016047 Peptidase M23 JO41_05835 IPR011055 Duplicated hybrid motif JO41_05840 IPR006690 Outer membrane protein, OmpA-like, conserved site JO41_05840 IPR006665 OmpA-like domain JO41_05840 IPR036737 OmpA-like domain superfamily JO41_05840 IPR006664 Outer membrane protein, bacterial JO41_05840 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal JO41_05840 IPR039001 Peptidoglycan-associated lipoprotein JO41_05845 IPR001977 Dephospho-CoA kinase JO41_05845 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_05865 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site JO41_05865 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain JO41_05865 IPR000836 Phosphoribosyltransferase domain JO41_05865 IPR029057 Phosphoribosyltransferase-like JO41_05865 IPR005946 Ribose-phosphate pyrophosphokinase JO41_05865 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type JO41_05885 IPR009164 Fructose-1,6-bisphosphatase class 3 JO41_05890 IPR017853 Glycoside hydrolase superfamily JO41_05890 IPR003385 Glycoside hydrolase, family 77 JO41_05895 IPR016040 NAD(P)-binding domain JO41_05895 IPR005886 UDP-glucose 4-epimerase JO41_05895 IPR036291 NAD(P)-binding domain superfamily JO41_05965 IPR007168 Phage shock protein, PspC, N-terminal JO41_05975 IPR005149 Transcription regulator PadR, N-terminal JO41_05975 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_05975 IPR036390 Winged helix DNA-binding domain superfamily JO41_05990 IPR002915 DeoC/FbaB/ lacD aldolase JO41_05990 IPR011343 Deoxyribose-phosphate aldolase JO41_05990 IPR013785 Aldolase-type TIM barrel JO41_05990 IPR028581 Deoxyribose-phosphate aldolase type I JO41_05995 IPR001365 Adenosine/AMP deaminase domain JO41_05995 IPR032466 Metal-dependent hydrolase JO41_06000 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_06000 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG JO41_06000 IPR020595 MnmG-related, conserved site JO41_06000 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related JO41_06000 IPR026904 GidA associated domain 3 JO41_06010 IPR008824 RuvB-like P-loop domain JO41_06010 IPR041445 RuvB, AAA lid domain JO41_06010 IPR008823 RuvB C-terminal winged helix domain JO41_06010 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_06010 IPR036390 Winged helix DNA-binding domain superfamily JO41_06010 IPR003593 AAA+ ATPase domain JO41_06010 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06010 IPR004605 DNA helicase, Holliday junction RuvB-type JO41_06015 IPR003660 HAMP domain JO41_06015 IPR033479 Double Cache domain 1 JO41_06015 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06015 IPR029151 Periplasmic sensor-like domain superfamily JO41_06015 IPR000727 Target SNARE coiled-coil homology domain JO41_06020 IPR011339 ISC system FeS cluster assembly, IscU scaffold JO41_06020 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal JO41_06030 IPR001539 Peptidase U32 JO41_06030 IPR020988 Peptidase U32, collagenase JO41_06050 IPR019734 Tetratricopeptide repeat JO41_06050 IPR013026 Tetratricopeptide repeat-containing domain JO41_06050 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_06065 IPR041095 Elongation Factor G, domain II JO41_06065 IPR009022 Elongation factor G, domain III JO41_06065 IPR005517 Translation elongation factor EFG/EF2, domain IV JO41_06065 IPR035647 EF-G domain III/V-like JO41_06065 IPR000640 Elongation factor EFG, domain V-like JO41_06065 IPR004540 Translation elongation factor EFG/EF2 JO41_06065 IPR009000 Translation protein, beta-barrel domain superfamily JO41_06065 IPR000795 Transcription factor, GTP-binding domain JO41_06065 IPR031157 Tr-type G domain, conserved site JO41_06065 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_06065 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_06065 IPR005225 Small GTP-binding protein domain JO41_06065 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06065 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_06070 IPR034904 Fe-S cluster assembly domain superfamily JO41_06070 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal JO41_06085 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I JO41_06085 IPR016066 Alpha-D-phosphohexomutase, conserved site JO41_06085 IPR005841 Alpha-D-phosphohexomutase superfamily JO41_06085 IPR005843 Alpha-D-phosphohexomutase, C-terminal JO41_06085 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily JO41_06085 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III JO41_06085 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III JO41_06085 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II JO41_06090 IPR011055 Duplicated hybrid motif JO41_06090 IPR007340 Opacity-associated protein A JO41_06090 IPR016047 Peptidase M23 JO41_06125 IPR024728 DNA polymerase type-Y, HhH motif JO41_06125 IPR001126 UmuC domain JO41_06125 IPR036775 DNA polymerase, Y-family, little finger domain superfamily JO41_06125 IPR017961 DNA polymerase, Y-family, little finger domain JO41_06125 IPR022880 DNA polymerase IV JO41_06160 IPR013762 Integrase-like, catalytic domain superfamily JO41_06160 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO41_06160 IPR023009 Tyrosine recombinase XerC/XerD JO41_06160 IPR011931 Tyrosine recombinase XerC JO41_06160 IPR004107 Integrase, SAM-like, N-terminal JO41_06160 IPR010998 Integrase/recombinase, N-terminal JO41_06160 IPR002104 Integrase, catalytic domain JO41_06175 IPR000055 Restriction endonuclease, type I, HsdS JO41_06185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_06185 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily JO41_06185 IPR003356 DNA methylase, adenine-specific JO41_06190 IPR033479 Double Cache domain 1 JO41_06190 IPR003660 HAMP domain JO41_06190 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06190 IPR000727 Target SNARE coiled-coil homology domain JO41_06190 IPR029151 Periplasmic sensor-like domain superfamily JO41_06195 IPR005322 Peptidase C69, dipeptidase A JO41_06200 IPR000727 Target SNARE coiled-coil homology domain JO41_06200 IPR029151 Periplasmic sensor-like domain superfamily JO41_06200 IPR004090 Chemotaxis methyl-accepting receptor JO41_06200 IPR033479 Double Cache domain 1 JO41_06200 IPR003660 HAMP domain JO41_06200 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06210 IPR029151 Periplasmic sensor-like domain superfamily JO41_06210 IPR033479 Double Cache domain 1 JO41_06210 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06210 IPR003660 HAMP domain JO41_06220 IPR041827 CpdB, N-terminal metallophosphatase domain JO41_06220 IPR029052 Metallo-dependent phosphatase-like JO41_06220 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type JO41_06220 IPR006179 5'-Nucleotidase/apyrase JO41_06220 IPR006146 5'-Nucleotidase, conserved site JO41_06220 IPR036907 5'-Nucleotidase, C-terminal domain superfamily JO41_06220 IPR008334 5'-Nucleotidase, C-terminal JO41_06220 IPR019931 LPXTG cell wall anchor domain JO41_06230 IPR005170 Transporter-associated domain JO41_06230 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily JO41_06230 IPR023729 K(+)/H(+) antiporter NhaP2 JO41_06230 IPR030151 K(+)/H(+) antiporter NhaP JO41_06230 IPR038770 Sodium/solute symporter superfamily JO41_06230 IPR036318 FAD-binding, type PCMH-like superfamily JO41_06230 IPR006153 Cation/H+ exchanger JO41_06230 IPR006037 Regulator of K+ conductance, C-terminal JO41_06245 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type JO41_06245 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_06245 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal JO41_06245 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase JO41_06260 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase JO41_06260 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase JO41_06260 IPR029056 Ribokinase-like JO41_06265 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal JO41_06265 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily JO41_06265 IPR000312 Glycosyl transferase, family 3 JO41_06265 IPR017459 Glycosyl transferase family 3, N-terminal domain JO41_06265 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase JO41_06265 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily JO41_06265 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site JO41_06265 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily JO41_06265 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic JO41_06270 IPR001667 DDH domain JO41_06270 IPR041122 RecJ, OB domain JO41_06270 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal JO41_06270 IPR004610 Bacterial RecJ exonuclease JO41_06270 IPR003156 DHHA1 domain JO41_06270 IPR038763 DHH phosphoesterase superfamily JO41_06285 IPR011006 CheY-like superfamily JO41_06285 IPR001867 OmpR/PhoB-type DNA-binding domain JO41_06285 IPR016032 Signal transduction response regulator, C-terminal effector JO41_06285 IPR001789 Signal transduction response regulator, receiver domain JO41_06285 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_06285 IPR039420 Transcriptional regulatory protein WalR-like JO41_06290 IPR003660 HAMP domain JO41_06290 IPR003594 Histidine kinase/HSP90-like ATPase JO41_06290 IPR004358 Signal transduction histidine kinase-related protein, C-terminal JO41_06290 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily JO41_06290 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain JO41_06290 IPR005467 Histidine kinase domain JO41_06290 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_06300 IPR011782 Peptidase S1C, Do JO41_06300 IPR036034 PDZ superfamily JO41_06300 IPR001478 PDZ domain JO41_06300 IPR009003 Peptidase S1, PA clan JO41_06300 IPR001940 Peptidase S1C JO41_06305 IPR017871 ABC transporter, conserved site JO41_06305 IPR018449 NIL domain JO41_06305 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06305 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain JO41_06305 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal JO41_06305 IPR003593 AAA+ ATPase domain JO41_06305 IPR003439 ABC transporter-like JO41_06305 IPR026253 Methionine import ATP-binding protein MetN JO41_06310 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_06310 IPR035906 MetI-like superfamily JO41_06315 IPR002915 DeoC/FbaB/ lacD aldolase JO41_06315 IPR013785 Aldolase-type TIM barrel JO41_06315 IPR041720 Aldolase FbaB-like, archaeal-type JO41_06315 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase JO41_06320 IPR028082 Periplasmic binding protein-like I JO41_06320 IPR025997 Periplasmic binding protein JO41_06320 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB JO41_06325 IPR001851 ABC transporter, permease JO41_06330 IPR001851 ABC transporter, permease JO41_06335 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06335 IPR003439 ABC transporter-like JO41_06335 IPR017871 ABC transporter, conserved site JO41_06335 IPR030281 Autoinducer 2 import ATP-binding protein LsrA JO41_06335 IPR003593 AAA+ ATPase domain JO41_06340 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_06340 IPR007324 Sugar-binding domain, putative JO41_06340 IPR037171 NagB/RpiA transferase-like JO41_06345 IPR000577 Carbohydrate kinase, FGGY JO41_06345 IPR018485 Carbohydrate kinase, FGGY, C-terminal JO41_06345 IPR033676 Autoinducer-2 kinase JO41_06345 IPR018484 Carbohydrate kinase, FGGY, N-terminal JO41_06360 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_06360 IPR035906 MetI-like superfamily JO41_06365 IPR035906 MetI-like superfamily JO41_06365 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_06370 IPR030880 DEAD-box ATP-dependent RNA helicase CshA JO41_06370 IPR011545 DEAD/DEAH box helicase domain JO41_06370 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_06370 IPR001650 Helicase, C-terminal JO41_06370 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06370 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site JO41_06370 IPR014014 RNA helicase, DEAD-box type, Q motif JO41_06380 IPR000649 Initiation factor 2B-related JO41_06380 IPR005251 Methylthioribose-1-phosphate isomerase JO41_06380 IPR011559 Initiation factor 2B alpha/beta/delta JO41_06380 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal JO41_06380 IPR037171 NagB/RpiA transferase-like JO41_06390 IPR006009 N-acetylglucosaminyltransferase, MurG JO41_06390 IPR007235 Glycosyl transferase, family 28, C-terminal JO41_06390 IPR004276 Glycosyltransferase family 28, N-terminal domain JO41_06430 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal JO41_06430 IPR036291 NAD(P)-binding domain superfamily JO41_06430 IPR001236 Lactate/malate dehydrogenase, N-terminal JO41_06430 IPR018177 L-lactate dehydrogenase, active site JO41_06430 IPR011304 L-lactate dehydrogenase JO41_06430 IPR022383 Lactate/malate dehydrogenase, C-terminal JO41_06430 IPR001557 L-lactate/malate dehydrogenase JO41_06435 IPR036291 NAD(P)-binding domain superfamily JO41_06435 IPR001891 Malic oxidoreductase JO41_06435 IPR015884 Malic enzyme, conserved site JO41_06435 IPR012301 Malic enzyme, N-terminal domain JO41_06435 IPR037062 Malic enzyme, N-terminal domain superfamily JO41_06435 IPR012302 Malic enzyme, NAD-binding JO41_06445 IPR012340 Nucleic acid-binding, OB-fold JO41_06445 IPR000424 Primosome PriB/single-strand DNA-binding JO41_06445 IPR011344 Single-stranded DNA-binding protein JO41_06490 IPR022628 S-adenosylmethionine synthetase, N-terminal JO41_06490 IPR002133 S-adenosylmethionine synthetase JO41_06490 IPR022630 S-adenosylmethionine synthetase, C-terminal JO41_06490 IPR022631 S-adenosylmethionine synthetase, conserved site JO41_06490 IPR022629 S-adenosylmethionine synthetase, central domain JO41_06490 IPR022636 S-adenosylmethionine synthetase superfamily JO41_06500 IPR036063 Smr domain superfamily JO41_06500 IPR002625 Smr domain JO41_06500 IPR007696 DNA mismatch repair protein MutS, core JO41_06500 IPR000432 DNA mismatch repair protein MutS, C-terminal JO41_06500 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06500 IPR036187 DNA mismatch repair protein MutS, core domain superfamily JO41_06500 IPR005747 Endonuclease MutS2 JO41_06515 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta JO41_06515 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta JO41_06520 IPR010186 Glycine reductase, selenoprotein B JO41_06520 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO41_06525 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site JO41_06525 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family JO41_06525 IPR010186 Glycine reductase, selenoprotein B JO41_06530 IPR016195 Polymerase/histidinol phosphatase-like JO41_06530 IPR003141 Polymerase/histidinol phosphatase, N-terminal JO41_06530 IPR004013 PHP domain JO41_06540 IPR018490 Cyclic nucleotide-binding-like JO41_06540 IPR036390 Winged helix DNA-binding domain superfamily JO41_06540 IPR014710 RmlC-like jelly roll fold JO41_06540 IPR012318 Crp-type HTH domain JO41_06540 IPR000595 Cyclic nucleotide-binding domain JO41_06540 IPR018488 Cyclic nucleotide-binding, conserved site JO41_06540 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_06545 IPR041471 UvrB, interaction domain JO41_06545 IPR037235 TRCF-like, C-terminal domain JO41_06545 IPR004576 Transcription-repair coupling factor JO41_06545 IPR001650 Helicase, C-terminal JO41_06545 IPR005118 Transcription-repair-coupling factor, C-terminal domain JO41_06545 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_06545 IPR011545 DEAD/DEAH box helicase domain JO41_06545 IPR003711 CarD-like/TRCF domain JO41_06545 IPR036101 CarD-like/TRCF domain superfamily JO41_06545 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06710 IPR001095 Acetyl-CoA carboxylase, alpha subunit JO41_06710 IPR029045 ClpP/crotonase-like domain superfamily JO41_06710 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal JO41_06715 IPR034733 Acetyl-CoA carboxylase JO41_06715 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit JO41_06715 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal JO41_06715 IPR029045 ClpP/crotonase-like domain superfamily JO41_06720 IPR011764 Biotin carboxylation domain JO41_06720 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase JO41_06720 IPR011761 ATP-grasp fold JO41_06720 IPR013815 ATP-grasp fold, subdomain 1 JO41_06720 IPR005482 Biotin carboxylase, C-terminal JO41_06720 IPR005481 Biotin carboxylase-like, N-terminal domain JO41_06720 IPR011054 Rudiment single hybrid motif JO41_06720 IPR016185 Pre-ATP-grasp domain superfamily JO41_06720 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain JO41_06725 IPR000089 Biotin/lipoyl attachment JO41_06725 IPR001882 Biotin-binding site JO41_06725 IPR001249 Acetyl-CoA biotin carboxyl carrier JO41_06725 IPR011053 Single hybrid motif JO41_06730 IPR024906 Enoyl reductase FAD binding domain JO41_06730 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative JO41_06730 IPR010758 Trans-2-enoyl-CoA reductase JO41_06735 IPR009051 Alpha-helical ferredoxin JO41_06735 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO41_06735 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO41_06735 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC JO41_06735 IPR026902 RnfC Barrel sandwich hybrid domain JO41_06735 IPR019554 Soluble ligand binding domain JO41_06735 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily JO41_06735 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain JO41_06740 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D JO41_06740 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD JO41_06745 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG JO41_06745 IPR007329 FMN-binding JO41_06750 IPR003667 NqrDE/RnfAE JO41_06750 IPR010968 Ion-translocating oxidoreductase complex subunit E JO41_06755 IPR003667 NqrDE/RnfAE JO41_06755 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA JO41_06760 IPR007202 4Fe-4S domain JO41_06760 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO41_06760 IPR011005 Dihydropteroate synthase-like JO41_06760 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB JO41_06760 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria JO41_06760 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO41_06765 IPR005225 Small GTP-binding protein domain JO41_06765 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06765 IPR006073 GTP binding domain JO41_06765 IPR005662 GTP-binding protein Era JO41_06765 IPR030388 Era-type guanine nucleotide-binding (G) domain JO41_06765 IPR004044 K Homology domain, type 2 JO41_06765 IPR015946 K homology domain-like, alpha/beta JO41_06765 IPR009019 K homology domain superfamily, prokaryotic type JO41_06770 IPR037294 ABC transporter, BtuC-like JO41_06770 IPR001626 ABC transporter, TroCD-like JO41_06775 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain JO41_06775 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily JO41_06775 IPR006130 Aspartate/ornithine carbamoyltransferase JO41_06775 IPR017702 Putative carbamoyltransferase YgeW JO41_06775 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding JO41_06780 IPR017706 Peptidase M20/DapE, YgeY JO41_06780 IPR011650 Peptidase M20, dimerisation domain JO41_06780 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO41_06780 IPR036264 Bacterial exopeptidase dimerisation domain JO41_06780 IPR002933 Peptidase M20 JO41_06785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_06785 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain JO41_06785 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_06785 IPR004546 Restriction endonuclease, type I, HsdM JO41_06785 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily JO41_06785 IPR003356 DNA methylase, adenine-specific JO41_06795 IPR000055 Restriction endonuclease, type I, HsdS JO41_06800 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06805 IPR040980 SWI2/SNF2 ATPase JO41_06805 IPR022625 Type-1 restriction enzyme R protein, C-terminal JO41_06805 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal JO41_06805 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06805 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_06805 IPR004473 Restriction endonuclease, type I, HsdR JO41_06815 IPR007621 TPM domain JO41_06825 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_06825 IPR023035 Ribosomal protein S9, bacterial/plastid JO41_06825 IPR020574 Ribosomal protein S9, conserved site JO41_06825 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_06825 IPR000754 Ribosomal protein S9 JO41_06830 IPR005822 Ribosomal protein L13 JO41_06830 IPR036899 Ribosomal protein L13 superfamily JO41_06830 IPR023563 Ribosomal protein L13, conserved site JO41_06830 IPR005823 Ribosomal protein L13, bacterial-type JO41_06845 IPR011130 SecA, preprotein cross-linking domain JO41_06845 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06845 IPR004027 SEC-C motif JO41_06845 IPR000185 Protein translocase subunit SecA JO41_06845 IPR020937 SecA conserved site JO41_06845 IPR011115 SecA DEAD-like, N-terminal JO41_06845 IPR014018 SecA motor DEAD JO41_06845 IPR011116 SecA Wing/Scaffold JO41_06845 IPR036670 SecA, preprotein cross-linking domain superfamily JO41_06845 IPR036266 SecA, Wing/Scaffold superfamily JO41_06910 IPR004785 Ribose 5-phosphate isomerase B JO41_06910 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family JO41_06910 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily JO41_06925 IPR002577 Helix-turn-helix, HxlR type JO41_06925 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_06925 IPR036390 Winged helix DNA-binding domain superfamily JO41_06970 IPR003761 Exonuclease VII, small subunit JO41_06970 IPR037004 Exonuclease VII, small subunit superfamily JO41_06975 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms JO41_06975 IPR014762 DNA mismatch repair, conserved site JO41_06975 IPR020667 DNA mismatch repair protein, MutL JO41_06975 IPR002099 DNA mismatch repair protein family, N-terminal JO41_06975 IPR013507 DNA mismatch repair protein, S5 domain 2-like JO41_06975 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_06975 IPR014790 MutL, C-terminal, dimerisation JO41_06975 IPR042120 MutL, C-terminal domain, dimerisation subdomain JO41_06975 IPR042121 MutL, C-terminal domain, regulatory subdomain JO41_06975 IPR037198 MutL, C-terminal domain superfamily JO41_06975 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_06975 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_06980 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06980 IPR033186 Helicase HerA-like C-terminal JO41_06990 IPR001789 Signal transduction response regulator, receiver domain JO41_06990 IPR003607 HD/PDEase domain JO41_06990 IPR011006 CheY-like superfamily JO41_06990 IPR037522 HD-GYP domain JO41_06995 IPR000432 DNA mismatch repair protein MutS, C-terminal JO41_06995 IPR007696 DNA mismatch repair protein MutS, core JO41_06995 IPR036063 Smr domain superfamily JO41_06995 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_06995 IPR005747 Endonuclease MutS2 JO41_06995 IPR002625 Smr domain JO41_06995 IPR036187 DNA mismatch repair protein MutS, core domain superfamily JO41_07000 IPR001029 Flagellin, D0/D1 domain JO41_07000 IPR001492 Flagellin JO41_07000 IPR042187 Flagellin, C-terminal domain, subdomain 2 JO41_07015 IPR001792 Acylphosphatase-like domain JO41_07015 IPR020456 Acylphosphatase JO41_07015 IPR017968 Acylphosphatase, conserved site JO41_07015 IPR036046 Acylphosphatase-like domain superfamily JO41_07030 IPR023214 HAD superfamily JO41_07030 IPR008250 P-type ATPase, A domain superfamily JO41_07030 IPR023298 P-type ATPase, transmembrane domain superfamily JO41_07030 IPR001757 P-type ATPase JO41_07030 IPR018303 P-type ATPase, phosphorylation site JO41_07030 IPR023299 P-type ATPase, cytoplasmic domain N JO41_07030 IPR027256 P-type ATPase, subfamily IB JO41_07030 IPR036412 HAD-like superfamily JO41_07050 IPR023151 PEP-utilising enzyme, conserved site JO41_07050 IPR000121 PEP-utilising enzyme, C-terminal JO41_07050 IPR018274 PEP-utilising enzyme, active site JO41_07050 IPR040442 Pyruvate kinase-like domain superfamily JO41_07050 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO41_07050 IPR036618 PtsI, HPr-binding domain superfamily JO41_07050 IPR008731 Phosphotransferase system, enzyme I N-terminal JO41_07050 IPR008279 PEP-utilising enzyme, mobile domain JO41_07050 IPR006318 Phosphotransferase system, enzyme I-like JO41_07050 IPR024692 Phosphotransferase system, enzyme I JO41_07050 IPR036637 Phosphohistidine domain superfamily JO41_07055 IPR002736 Triphosphoribosyl-dephospho-CoA protein JO41_07055 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JO41_07055 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG JO41_07060 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes JO41_07060 IPR004679 2-hydroxycarboxylate transporter JO41_07070 IPR006472 Citrate lyase, alpha subunit JO41_07070 IPR037171 NagB/RpiA transferase-like JO41_07075 IPR006475 Citrate lyase, beta subunit, bacteria JO41_07075 IPR005000 HpcH/HpaI aldolase/citrate lyase domain JO41_07075 IPR011206 Citrate lyase beta subunit-like JO41_07075 IPR040442 Pyruvate kinase-like domain superfamily JO41_07075 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO41_07080 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein JO41_07080 IPR006495 Citrate lyase acyl carrier protein CitD JO41_07085 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_07085 IPR005216 Citrate lyase ligase JO41_07085 IPR016181 Acyl-CoA N-acyltransferase JO41_07085 IPR000182 GNAT domain JO41_07085 IPR004821 Cytidyltransferase-like domain JO41_07085 IPR013166 Citrate lyase ligase, C-terminal JO41_07115 IPR016484 GTP-binding protein EngA JO41_07115 IPR032859 GTPase Der, C-terminal KH-domain-like JO41_07115 IPR006073 GTP binding domain JO41_07115 IPR031166 EngA-type guanine nucleotide-binding (G) domain JO41_07115 IPR015946 K homology domain-like, alpha/beta JO41_07115 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07115 IPR005225 Small GTP-binding protein domain JO41_07130 IPR013324 RNA polymerase sigma factor, region 3/4-like JO41_07130 IPR013325 RNA polymerase sigma factor, region 2 JO41_07130 IPR007630 RNA polymerase sigma-70 region 4 JO41_07130 IPR007627 RNA polymerase sigma-70 region 2 JO41_07130 IPR007624 RNA polymerase sigma-70 region 3 JO41_07130 IPR014284 RNA polymerase sigma-70 like domain JO41_07130 IPR000943 RNA polymerase sigma-70 JO41_07130 IPR012845 RNA polymerase sigma factor, FliA/WhiG JO41_07150 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase JO41_07150 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal JO41_07150 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain JO41_07150 IPR013785 Aldolase-type TIM barrel JO41_07150 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain JO41_07150 IPR007229 Nicotinate phosphoribosyltransferase family JO41_07150 IPR006405 Nicotinate phosphoribosyltransferase pncB-type JO41_07175 IPR004131 Pyrophosphate-energised proton pump JO41_07180 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_07180 IPR002305 Aminoacyl-tRNA synthetase, class Ic JO41_07180 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_07180 IPR024109 Tryptophan-tRNA ligase, bacterial-type JO41_07180 IPR002306 Tryptophan-tRNA ligase JO41_07195 IPR006214 Bax inhibitor 1-related JO41_07225 IPR012338 Beta-lactamase/transpeptidase-like JO41_07225 IPR036138 Penicillin-binding protein, dimerisation domain superfamily JO41_07225 IPR001460 Penicillin-binding protein, transpeptidase JO41_07225 IPR011927 Stage V sporulation protein D JO41_07225 IPR005543 PASTA domain JO41_07225 IPR005311 Penicillin-binding protein, dimerisation domain JO41_07505 IPR020476 NUDIX hydrolase JO41_07505 IPR015797 NUDIX hydrolase-like domain superfamily JO41_07505 IPR003561 Mutator MutT JO41_07505 IPR000086 NUDIX hydrolase domain JO41_07505 IPR020084 NUDIX hydrolase, conserved site JO41_07530 IPR001872 Peptidase A8, signal peptidase II JO41_07535 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_07540 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_07540 IPR036390 Winged helix DNA-binding domain superfamily JO41_07540 IPR002481 Ferric-uptake regulator JO41_07550 IPR001478 PDZ domain JO41_07550 IPR036034 PDZ superfamily JO41_07550 IPR011782 Peptidase S1C, Do JO41_07550 IPR009003 Peptidase S1, PA clan JO41_07550 IPR001940 Peptidase S1C JO41_07555 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07555 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_07555 IPR003593 AAA+ ATPase domain JO41_07555 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain JO41_07555 IPR004504 DNA repair protein RadA JO41_07555 IPR041166 LapB, rubredoxin metal binding domain JO41_07555 IPR014774 KaiC-like domain JO41_07555 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_07575 IPR014311 Guanine deaminase JO41_07575 IPR032466 Metal-dependent hydrolase JO41_07575 IPR006680 Amidohydrolase-related JO41_07575 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_07580 IPR032466 Metal-dependent hydrolase JO41_07580 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_07580 IPR026912 Adenine deaminase C-terminal domain JO41_07580 IPR006679 Adenine deaminase JO41_07580 IPR006680 Amidohydrolase-related JO41_07585 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead JO41_07585 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding JO41_07585 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily JO41_07585 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily JO41_07590 IPR005107 CO dehydrogenase flavoprotein, C-terminal JO41_07590 IPR002346 Molybdopterin dehydrogenase, FAD-binding JO41_07590 IPR016166 FAD-binding domain, PCMH-type JO41_07590 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_07590 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily JO41_07590 IPR036318 FAD-binding, type PCMH-like superfamily JO41_07595 IPR012675 Beta-grasp domain superfamily JO41_07595 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain JO41_07595 IPR036010 2Fe-2S ferredoxin-like superfamily JO41_07595 IPR036884 [2Fe-2S]-binding domain superfamily JO41_07595 IPR002888 [2Fe-2S]-binding JO41_07605 IPR018060 DNA binding HTH domain, AraC-type JO41_07605 IPR018062 HTH domain AraC-type, conserved site JO41_07605 IPR009057 Homeobox-like domain superfamily JO41_07605 IPR029442 GyrI-like small molecule binding domain JO41_07605 IPR010499 Bacterial transcription activator, effector binding JO41_07605 IPR011256 Regulatory factor, effector binding domain superfamily JO41_07605 IPR020449 Transcription regulator HTH, AraC- type JO41_07620 IPR038135 Methylthiotransferase, N-terminal domain superfamily JO41_07620 IPR013848 Methylthiotransferase, N-terminal JO41_07620 IPR006467 MiaB-like tRNA modifying enzyme JO41_07620 IPR005839 Methylthiotransferase JO41_07620 IPR006638 Elp3/MiaB/NifB JO41_07620 IPR007197 Radical SAM JO41_07620 IPR023404 Radical SAM, alpha/beta horseshoe JO41_07620 IPR020612 Methylthiotransferase, conserved site JO41_07635 IPR023404 Radical SAM, alpha/beta horseshoe JO41_07635 IPR007197 Radical SAM JO41_07635 IPR010723 HemN, C-terminal JO41_07635 IPR004559 Heme chaperone HemW-like JO41_07635 IPR034505 Anaerobic coproporphyrinogen-III oxidase JO41_07635 IPR006638 Elp3/MiaB/NifB JO41_07640 IPR019533 Peptidase S26 JO41_07640 IPR019756 Peptidase S26A, signal peptidase I, serine active site JO41_07640 IPR019757 Peptidase S26A, signal peptidase I, lysine active site JO41_07640 IPR019758 Peptidase S26A, signal peptidase I, conserved site JO41_07640 IPR036286 LexA/Signal peptidase-like superfamily JO41_07640 IPR000223 Peptidase S26A, signal peptidase I JO41_07645 IPR020081 SsrA-binding protein, conserved site JO41_07645 IPR000037 SsrA-binding protein JO41_07645 IPR023620 Small protein B JO41_07655 IPR006555 ATP-dependent helicase, C-terminal JO41_07655 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07655 IPR001650 Helicase, C-terminal JO41_07655 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type JO41_07655 IPR010614 DEAD2 JO41_07655 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_07675 IPR003660 HAMP domain JO41_07675 IPR033479 Double Cache domain 1 JO41_07675 IPR029151 Periplasmic sensor-like domain superfamily JO41_07675 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_07685 IPR000623 Shikimate kinase/Threonine synthase-like 1 JO41_07685 IPR031322 Shikimate kinase/gluconokinase JO41_07685 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07685 IPR023000 Shikimate kinase, conserved site JO41_07715 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family JO41_07720 IPR002699 ATPase, V1 complex, subunit D JO41_07725 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07725 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO41_07725 IPR022879 V-type ATP synthase regulatory subunit B/beta JO41_07725 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO41_07730 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily JO41_07730 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site JO41_07730 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain JO41_07730 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain JO41_07730 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal JO41_07730 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension JO41_07730 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07730 IPR022878 V-type ATP synthase catalytic alpha chain JO41_07740 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily JO41_07740 IPR002842 V-type ATPase subunit E JO41_07745 IPR018052 Aldose 1-epimerase, conserved site JO41_07745 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase JO41_07745 IPR011013 Galactose mutarotase-like domain superfamily JO41_07745 IPR014718 Glycoside hydrolase-type carbohydrate-binding JO41_07745 IPR015443 Aldose 1-epimerase JO41_07755 IPR029061 Thiamin diphosphate-binding fold JO41_07755 IPR033248 Transketolase, C-terminal domain JO41_07755 IPR005477 Deoxyxylulose-5-phosphate synthase JO41_07755 IPR005474 Transketolase, N-terminal JO41_07755 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO41_07755 IPR020826 Transketolase binding site JO41_07755 IPR005475 Transketolase-like, pyrimidine-binding domain JO41_07760 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain JO41_07760 IPR037523 Vicinal oxygen chelate (VOC) domain JO41_07760 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase JO41_07765 IPR036610 PEBP-like superfamily JO41_07765 IPR005247 YbhB/YbcL JO41_07765 IPR008914 Phosphatidylethanolamine-binding protein JO41_07770 IPR029062 Class I glutamine amidotransferase-like JO41_07770 IPR005320 Peptidase S51 JO41_07790 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase JO41_07790 IPR014043 Acyl transferase JO41_07790 IPR036736 ACP-like superfamily JO41_07790 IPR020806 Polyketide synthase, phosphopantetheine-binding domain JO41_07790 IPR016039 Thiolase-like JO41_07790 IPR036299 Polyketide synthase, docking domain superfmaily JO41_07790 IPR009081 Phosphopantetheine binding ACP domain JO41_07790 IPR020807 Polyketide synthase, dehydratase domain JO41_07790 IPR042104 Polyketide synthase, dehydratase domain superfamily JO41_07790 IPR020843 Polyketide synthase, enoylreductase domain JO41_07790 IPR013968 Polyketide synthase, ketoreductase domain JO41_07790 IPR001227 Acyl transferase domain superfamily JO41_07790 IPR006162 Phosphopantetheine attachment site JO41_07790 IPR013154 Alcohol dehydrogenase, N-terminal JO41_07790 IPR018201 Beta-ketoacyl synthase, active site JO41_07790 IPR014030 Beta-ketoacyl synthase, N-terminal JO41_07790 IPR014031 Beta-ketoacyl synthase, C-terminal JO41_07790 IPR011032 GroES-like superfamily JO41_07790 IPR036291 NAD(P)-binding domain superfamily JO41_07790 IPR032821 Ketoacyl-synthetase, C-terminal extension JO41_07790 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain JO41_07790 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding JO41_07860 IPR029039 Flavoprotein-like superfamily JO41_07860 IPR003680 Flavodoxin-like fold JO41_07865 IPR013752 Ketopantoate reductase, C-terminal domain JO41_07865 IPR036291 NAD(P)-binding domain superfamily JO41_07865 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO41_07865 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO41_07865 IPR003710 Ketopantoate reductase ApbA/PanE JO41_07865 IPR013332 Ketopantoate reductase, N-terminal domain JO41_07870 IPR020550 Inositol monophosphatase, conserved site JO41_07870 IPR000760 Inositol monophosphatase-like JO41_07870 IPR020583 Inositol monophosphatase, metal-binding site JO41_07875 IPR003593 AAA+ ATPase domain JO41_07875 IPR003439 ABC transporter-like JO41_07875 IPR008995 Molybdate/tungstate binding, C-terminal JO41_07875 IPR017871 ABC transporter, conserved site JO41_07875 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC JO41_07875 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07895 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_07895 IPR036390 Winged helix DNA-binding domain superfamily JO41_07895 IPR000835 MarR-type HTH domain JO41_07915 IPR007621 TPM domain JO41_07920 IPR011895 Pyruvate-flavodoxin oxidoreductase JO41_07920 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain JO41_07920 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site JO41_07920 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II JO41_07920 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO41_07920 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding JO41_07920 IPR029061 Thiamin diphosphate-binding fold JO41_07920 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain JO41_07920 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily JO41_07920 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain JO41_07920 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain JO41_07920 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal JO41_07925 IPR023554 ATP-dependent RNA helicase RhlB type JO41_07925 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_07925 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_07925 IPR022077 ATP-dependent RNA helicase RhlB JO41_07925 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site JO41_07925 IPR014014 RNA helicase, DEAD-box type, Q motif JO41_07925 IPR001650 Helicase, C-terminal JO41_07925 IPR011545 DEAD/DEAH box helicase domain JO41_07930 IPR010161 Peptidase M20B, tripeptide aminopeptidase JO41_07930 IPR011650 Peptidase M20, dimerisation domain JO41_07930 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO41_07930 IPR036264 Bacterial exopeptidase dimerisation domain JO41_07930 IPR002933 Peptidase M20 JO41_07935 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO41_07935 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily JO41_07935 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta JO41_07935 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal JO41_07940 IPR042099 AMP-dependent synthetase-like superfamily JO41_07940 IPR000873 AMP-dependent synthetase/ligase JO41_07940 IPR020845 AMP-binding, conserved site JO41_07950 IPR004772 TrkH potassium transport family JO41_07950 IPR003445 Cation transporter JO41_07965 IPR009012 GrpE nucleotide exchange factor, head JO41_07965 IPR000740 GrpE nucleotide exchange factor JO41_07965 IPR013805 GrpE nucleotide exchange factor, coiled-coil JO41_07970 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily JO41_07970 IPR018181 Heat shock protein 70, conserved site JO41_07970 IPR013126 Heat shock protein 70 family JO41_07970 IPR012725 Chaperone DnaK JO41_07970 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily JO41_07975 IPR012724 Chaperone DnaJ JO41_07975 IPR001623 DnaJ domain JO41_07975 IPR008971 HSP40/DnaJ peptide-binding JO41_07975 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO41_07975 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO41_07975 IPR036869 Chaperone J-domain superfamily JO41_07975 IPR002939 Chaperone DnaJ, C-terminal JO41_07975 IPR018253 DnaJ domain, conserved site JO41_07985 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site JO41_07985 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding JO41_07985 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain JO41_07985 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_07985 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily JO41_07985 IPR023546 Methylated-DNA--protein-cysteine methyltransferase JO41_07985 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain JO41_08000 IPR001650 Helicase, C-terminal JO41_08000 IPR011545 DEAD/DEAH box helicase domain JO41_08000 IPR018973 DEAD/DEAH-box helicase, putative JO41_08000 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08000 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_08005 IPR041679 DNA2/NAM7 helicase-like, AAA domain JO41_08005 IPR041677 DNA2/NAM7 helicase, AAA domain JO41_08005 IPR025103 Protein of unknown function DUF4011 JO41_08005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08005 IPR041679 DNA2/NAM7 helicase-like, AAA domain JO41_08005 IPR025103 Protein of unknown function DUF4011 JO41_08005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08005 IPR041677 DNA2/NAM7 helicase, AAA domain JO41_08010 IPR012349 FMN-binding split barrel JO41_08010 IPR002563 Flavin reductase like domain JO41_08020 IPR002646 Poly A polymerase, head domain JO41_08020 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain JO41_08020 IPR023068 CCA-adding enzyme, firmicutes JO41_08020 IPR032810 CCA-adding enzyme, C-terminal JO41_08025 IPR005760 A/G-specific adenine glycosylase MutY JO41_08025 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif JO41_08025 IPR004035 Endonuclease III, iron-sulphur binding site JO41_08025 IPR003265 HhH-GPD domain JO41_08025 IPR000445 Helix-hairpin-helix motif JO41_08025 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal JO41_08025 IPR029119 MutY, C-terminal JO41_08025 IPR015797 NUDIX hydrolase-like domain superfamily JO41_08025 IPR004036 Endonuclease III-like, conserved site-2 JO41_08025 IPR011257 DNA glycosylase JO41_08030 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08030 IPR011892 Cytidylate kinase, putative JO41_08030 IPR011994 Cytidylate kinase domain JO41_08040 IPR004101 Mur ligase, C-terminal JO41_08040 IPR036615 Mur ligase, C-terminal domain superfamily JO41_08040 IPR000713 Mur ligase, N-terminal catalytic domain JO41_08040 IPR005758 UDP-N-acetylmuramate--L-alanine ligase JO41_08040 IPR036565 Mur-like, catalytic domain superfamily JO41_08040 IPR013221 Mur ligase, central JO41_08060 IPR011257 DNA glycosylase JO41_08060 IPR004036 Endonuclease III-like, conserved site-2 JO41_08060 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif JO41_08060 IPR003265 HhH-GPD domain JO41_08060 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal JO41_08060 IPR005759 Endonuclease III JO41_08060 IPR004035 Endonuclease III, iron-sulphur binding site JO41_08080 IPR042095 Sulfatase-modifying factor enzyme superfamily JO41_08080 IPR016187 C-type lectin fold JO41_08080 IPR005532 Sulfatase-modifying factor enzyme JO41_08085 IPR012547 PD-(D/E)XK nuclease superfamily 9 JO41_08085 IPR018631 AAA-ATPase-like domain JO41_08375 IPR012340 Nucleic acid-binding, OB-fold JO41_08375 IPR000424 Primosome PriB/single-strand DNA-binding JO41_08375 IPR011344 Single-stranded DNA-binding protein JO41_08415 IPR036611 Trigger factor ribosome-binding domain superfamily JO41_08415 IPR027304 Trigger factor/SurA domain superfamily JO41_08415 IPR037041 Trigger factor, C-terminal domain superfamily JO41_08415 IPR008881 Trigger factor, ribosome-binding, bacterial JO41_08415 IPR005215 Trigger factor JO41_08415 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain JO41_08415 IPR008880 Trigger factor, C-terminal JO41_08420 IPR018215 ClpP, Ser active site JO41_08420 IPR029045 ClpP/crotonase-like domain superfamily JO41_08420 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA JO41_08420 IPR033135 ClpP, histidine active site JO41_08420 IPR001907 ATP-dependent Clp protease proteolytic subunit JO41_08425 IPR001270 ClpA/B family JO41_08425 IPR038366 Zinc finger, ClpX C4-type superfamily JO41_08425 IPR003593 AAA+ ATPase domain JO41_08425 IPR003959 ATPase, AAA-type, core JO41_08425 IPR019489 Clp ATPase, C-terminal JO41_08425 IPR004487 Clp protease, ATP-binding subunit ClpX JO41_08425 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08425 IPR010603 Zinc finger, ClpX C4-type JO41_08435 IPR036565 Mur-like, catalytic domain superfamily JO41_08435 IPR004101 Mur ligase, C-terminal JO41_08435 IPR036615 Mur ligase, C-terminal domain superfamily JO41_08435 IPR013221 Mur ligase, central JO41_08435 IPR000713 Mur ligase, N-terminal catalytic domain JO41_08435 IPR035911 MurE/MurF, N-terminal JO41_08435 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase JO41_08455 IPR029058 Alpha/Beta hydrolase fold JO41_08455 IPR022742 Serine aminopeptidase, S33 JO41_08455 IPR000073 Alpha/beta hydrolase fold-1 JO41_08470 IPR035647 EF-G domain III/V-like JO41_08470 IPR013842 GTP-binding protein LepA, C-terminal JO41_08470 IPR038363 LepA, C-terminal domain superfamily JO41_08470 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_08470 IPR000640 Elongation factor EFG, domain V-like JO41_08470 IPR005225 Small GTP-binding protein domain JO41_08470 IPR000795 Transcription factor, GTP-binding domain JO41_08470 IPR041095 Elongation Factor G, domain II JO41_08470 IPR006297 Elongation factor 4 JO41_08470 IPR035654 Elongation factor 4, domain IV JO41_08470 IPR009000 Translation protein, beta-barrel domain superfamily JO41_08470 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08475 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_08475 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_08475 IPR008909 DALR anticodon binding JO41_08475 IPR035684 Arginyl-tRNA synthetase, catalytic core domain JO41_08475 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily JO41_08475 IPR005148 Arginyl tRNA synthetase N-terminal domain JO41_08475 IPR001278 Arginine-tRNA ligase JO41_08475 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_08490 IPR003876 Arginine deiminase JO41_08495 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding JO41_08495 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain JO41_08495 IPR006130 Aspartate/ornithine carbamoyltransferase JO41_08495 IPR024904 Ornithine carbamoyltransferase JO41_08495 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily JO41_08495 IPR002292 Ornithine/putrescine carbamoyltransferase JO41_08500 IPR001048 Aspartate/glutamate/uridylate kinase JO41_08500 IPR036393 Acetylglutamate kinase-like superfamily JO41_08500 IPR003964 Carbamate kinase JO41_08505 IPR018385 C4-dicarboxylate anaerobic carrier-like JO41_08515 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase JO41_08515 IPR036615 Mur ligase, C-terminal domain superfamily JO41_08515 IPR004101 Mur ligase, C-terminal JO41_08515 IPR036565 Mur-like, catalytic domain superfamily JO41_08515 IPR013221 Mur ligase, central JO41_08520 IPR029057 Phosphoribosyltransferase-like JO41_08520 IPR000836 Phosphoribosyltransferase domain JO41_08520 IPR005764 Adenine phosphoribosyl transferase JO41_08525 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_08525 IPR004522 Asparagine-tRNA ligase JO41_08525 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb JO41_08525 IPR012340 Nucleic acid-binding, OB-fold JO41_08525 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) JO41_08525 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type JO41_08540 IPR036390 Winged helix DNA-binding domain superfamily JO41_08540 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_08540 IPR002577 Helix-turn-helix, HxlR type JO41_08565 IPR002941 DNA methylase N-4/N-6 JO41_08565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_08565 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_08565 IPR001091 Restriction/modification DNA-methylase JO41_08570 IPR021191 Restriction endonuclease, type II, DpmII JO41_08570 IPR007637 Restriction endonuclease, type II, DpmII-like JO41_08580 IPR012327 D12 class N6 adenine-specific DNA methyltransferase JO41_08580 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_08580 IPR012263 Adenine modification methylase, M.EcoRV-type JO41_08580 IPR023095 Adenine-specific methyltransferase, domain 2 JO41_08605 IPR007419 BFD-like [2Fe-2S]-binding domain JO41_08605 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily JO41_08605 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_08605 IPR023753 FAD/NAD(P)-binding domain JO41_08605 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B JO41_08610 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_08610 IPR006076 FAD dependent oxidoreductase JO41_08615 IPR005999 Glycerol kinase JO41_08615 IPR018484 Carbohydrate kinase, FGGY, N-terminal JO41_08615 IPR018483 Carbohydrate kinase, FGGY, conserved site JO41_08615 IPR018485 Carbohydrate kinase, FGGY, C-terminal JO41_08615 IPR000577 Carbohydrate kinase, FGGY JO41_08630 IPR005746 Thioredoxin JO41_08630 IPR036249 Thioredoxin-like superfamily JO41_08630 IPR017937 Thioredoxin, conserved site JO41_08630 IPR013766 Thioredoxin domain JO41_08635 IPR005235 Metallophosphoesterase, YmdB-like JO41_08635 IPR029052 Metallo-dependent phosphatase-like JO41_08640 IPR000192 Aminotransferase class V domain JO41_08640 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site JO41_08640 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_08640 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_08640 IPR015424 Pyridoxal phosphate-dependent transferase JO41_08640 IPR010970 Cysteine desulfurase, SufS JO41_08650 IPR000825 SUF system FeS cluster assembly, SufBD JO41_08650 IPR010231 SUF system FeS cluster assembly, SufB JO41_08650 IPR037284 SUF system FeS cluster assembly, SufBD superfamily JO41_08655 IPR003593 AAA+ ATPase domain JO41_08655 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08655 IPR010230 FeS cluster assembly SUF system, ATPase SufC JO41_08655 IPR017871 ABC transporter, conserved site JO41_08655 IPR003439 ABC transporter-like JO41_08665 IPR035904 Chorismate synthase AroC superfamily JO41_08665 IPR020541 Chorismate synthase, conserved site JO41_08665 IPR000453 Chorismate synthase JO41_08700 IPR003753 Exonuclease VII, large subunit JO41_08700 IPR020579 Exonuclease VII, large subunit, C-terminal JO41_08700 IPR025824 OB-fold nucleic acid binding domain JO41_08715 IPR023937 Bis(5'-nucleosyl)-tetraphosphatase PrpE JO41_08715 IPR029052 Metallo-dependent phosphatase-like JO41_08715 IPR041780 PrpE-like, metallophosphatase domain JO41_08715 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase JO41_08715 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type JO41_08720 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA JO41_08720 IPR029045 ClpP/crotonase-like domain superfamily JO41_08720 IPR001907 ATP-dependent Clp protease proteolytic subunit JO41_08720 IPR033135 ClpP, histidine active site JO41_08745 IPR019757 Peptidase S26A, signal peptidase I, lysine active site JO41_08745 IPR000223 Peptidase S26A, signal peptidase I JO41_08745 IPR019533 Peptidase S26 JO41_08745 IPR019758 Peptidase S26A, signal peptidase I, conserved site JO41_08745 IPR036286 LexA/Signal peptidase-like superfamily JO41_08755 IPR003660 HAMP domain JO41_08755 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_08755 IPR029151 Periplasmic sensor-like domain superfamily JO41_08755 IPR033479 Double Cache domain 1 JO41_08770 IPR040072 Methyltransferase (Class A) JO41_08770 IPR027492 Dual-specificity RNA methyltransferase RlmN JO41_08770 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr JO41_08770 IPR007197 Radical SAM JO41_08770 IPR013785 Aldolase-type TIM barrel JO41_08780 IPR006664 Outer membrane protein, bacterial JO41_08780 IPR036737 OmpA-like domain superfamily JO41_08780 IPR006665 OmpA-like domain JO41_08780 IPR006690 Outer membrane protein, OmpA-like, conserved site JO41_08785 IPR002347 Short-chain dehydrogenase/reductase SDR JO41_08785 IPR020904 Short-chain dehydrogenase/reductase, conserved site JO41_08785 IPR036291 NAD(P)-binding domain superfamily JO41_08795 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type JO41_08795 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08815 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal JO41_08815 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain JO41_08815 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily JO41_08815 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal JO41_08815 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal JO41_08815 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily JO41_08815 IPR006089 Acyl-CoA dehydrogenase, conserved site JO41_08820 IPR029510 Aldehyde dehydrogenase, glutamic acid active site JO41_08820 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent JO41_08820 IPR016160 Aldehyde dehydrogenase, cysteine active site JO41_08820 IPR016161 Aldehyde/histidinol dehydrogenase JO41_08820 IPR016163 Aldehyde dehydrogenase, C-terminal JO41_08820 IPR015590 Aldehyde dehydrogenase domain JO41_08820 IPR016162 Aldehyde dehydrogenase, N-terminal JO41_08825 IPR004837 Sodium/calcium exchanger membrane region JO41_08825 IPR004481 Sodium/potassium/calcium exchanger JO41_08845 IPR000816 Peptidase C15, pyroglutamyl peptidase I JO41_08845 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like JO41_08845 IPR033693 Pyroglutamyl peptidase I, Glu active site JO41_08845 IPR033694 Pyroglutamyl peptidase I, Cys active site JO41_08845 IPR029762 Pyroglutamyl peptidase I, bacterial-type JO41_08845 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily JO41_08875 IPR012834 Flagellar basal-body rod FlgG JO41_08875 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO41_08875 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO41_08875 IPR001444 Flagellar basal body rod protein, N-terminal JO41_08875 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO41_08875 IPR019776 Flagellar basal body rod protein, conserved site JO41_08880 IPR001444 Flagellar basal body rod protein, N-terminal JO41_08880 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO41_08880 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO41_08880 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO41_08880 IPR012834 Flagellar basal-body rod FlgG JO41_08880 IPR019776 Flagellar basal body rod protein, conserved site JO41_08885 IPR019301 Flagellar protein FlgJ, N-terminal JO41_08900 IPR003593 AAA+ ATPase domain JO41_08900 IPR003439 ABC transporter-like JO41_08900 IPR017871 ABC transporter, conserved site JO41_08900 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_08935 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain JO41_08935 IPR037022 Formyl transferase, C-terminal domain superfamily JO41_08935 IPR005794 Methionyl-tRNA formyltransferase JO41_08935 IPR002376 Formyl transferase, N-terminal JO41_08935 IPR011034 Formyl transferase-like, C-terminal domain superfamily JO41_08935 IPR036477 Formyl transferase, N-terminal domain superfamily JO41_08935 IPR005793 Formyl transferase, C-terminal JO41_08940 IPR023635 Peptide deformylase JO41_08940 IPR036821 Peptide deformylase superfamily JO41_08960 IPR036849 Enolase-like, C-terminal domain superfamily JO41_08960 IPR020811 Enolase, N-terminal JO41_08960 IPR020810 Enolase, C-terminal TIM barrel domain JO41_08960 IPR000941 Enolase JO41_08960 IPR020809 Enolase, conserved site JO41_08960 IPR029017 Enolase-like, N-terminal JO41_08965 IPR006175 YjgF/YER057c/UK114 family JO41_08965 IPR019897 RidA, conserved site JO41_08965 IPR006056 RidA family JO41_08965 IPR035959 RutC-like superfamily JO41_08980 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain JO41_08985 IPR001787 Ribosomal protein L21 JO41_08985 IPR028909 Ribosomal protein L21-like JO41_08985 IPR018258 Ribosomal protein L21, conserved site JO41_08985 IPR036164 L21-like superfamily JO41_08995 IPR001684 Ribosomal protein L27 JO41_08995 IPR018261 Ribosomal protein L27, conserved site JO41_09000 IPR031167 OBG-type guanine nucleotide-binding (G) domain JO41_09000 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09000 IPR036726 GTP1/OBG domain superfamily JO41_09000 IPR006169 GTP1/OBG domain JO41_09000 IPR006073 GTP binding domain JO41_09000 IPR006074 GTP1/OBG, conserved site JO41_09000 IPR014100 GTP-binding protein Obg/CgtA JO41_09000 IPR035101 GTP-binding protein, Obg-type JO41_09005 IPR004821 Cytidyltransferase-like domain JO41_09005 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase JO41_09005 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_09020 IPR004394 Protein Iojap/ribosomal silencing factor RsfS JO41_09030 IPR028998 Ribosome maturation factor RimP, C-terminal JO41_09030 IPR003728 Ribosome maturation factor RimP JO41_09030 IPR035956 RimP, N-terminal domain superfamily JO41_09030 IPR028989 Ribosome maturation factor RimP, N-terminal JO41_09030 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily JO41_09035 IPR036555 NusA, N-terminal domain superfamily JO41_09035 IPR030842 Transcription termination/antitermination protein NusA, bacterial JO41_09035 IPR012340 Nucleic acid-binding, OB-fold JO41_09035 IPR004087 K Homology domain JO41_09035 IPR015946 K homology domain-like, alpha/beta JO41_09035 IPR010213 Transcription termination factor NusA JO41_09035 IPR025249 KH domain, NusA-like JO41_09035 IPR009019 K homology domain superfamily, prokaryotic type JO41_09035 IPR022967 RNA-binding domain, S1 JO41_09035 IPR003029 S1 domain JO41_09035 IPR013735 Transcription factor NusA, N-terminal JO41_09040 IPR036925 Translation initiation factor IF-2, domain 3 superfamily JO41_09040 IPR009000 Translation protein, beta-barrel domain superfamily JO41_09040 IPR006847 Translation initiation factor IF-2, N-terminal JO41_09040 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09040 IPR005225 Small GTP-binding protein domain JO41_09040 IPR023115 Translation initiation factor IF- 2, domain 3 JO41_09040 IPR000795 Transcription factor, GTP-binding domain JO41_09040 IPR000178 Translation initiation factor aIF-2, bacterial-like JO41_09040 IPR015760 Translation initiation factor IF- 2 JO41_09045 IPR015946 K homology domain-like, alpha/beta JO41_09045 IPR000238 Ribosome-binding factor A JO41_09045 IPR020053 Ribosome-binding factor A, conserved site JO41_09045 IPR023799 Ribosome-binding factor A domain superfamily JO41_09050 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_09050 IPR002501 Pseudouridine synthase II, N-terminal JO41_09050 IPR014780 tRNA pseudouridine synthase II, TruB JO41_09050 IPR032819 tRNA pseudouridylate synthase B, C-terminal JO41_09055 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic JO41_09055 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_09055 IPR023465 Riboflavin kinase domain superfamily JO41_09055 IPR023468 Riboflavin kinase JO41_09055 IPR002606 Riboflavin kinase, bacterial JO41_09055 IPR015864 FAD synthetase JO41_09060 IPR005290 Ribosomal protein S15, bacterial-type JO41_09060 IPR009068 S15/NS1, RNA-binding JO41_09060 IPR000589 Ribosomal protein S15 JO41_09065 IPR003029 S1 domain JO41_09065 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_09065 IPR022967 RNA-binding domain, S1 JO41_09065 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain JO41_09065 IPR036612 K Homology domain, type 1 superfamily JO41_09065 IPR004088 K Homology domain, type 1 JO41_09065 IPR027408 PNPase/RNase PH domain superfamily JO41_09065 IPR001247 Exoribonuclease, phosphorolytic domain 1 JO41_09065 IPR015847 Exoribonuclease, phosphorolytic domain 2 JO41_09065 IPR036345 Exoribonuclease, PH domain 2 superfamily JO41_09065 IPR004087 K Homology domain JO41_09065 IPR012340 Nucleic acid-binding, OB-fold JO41_09065 IPR012162 Polyribonucleotide nucleotidyltransferase JO41_09070 IPR029054 dUTPase-like JO41_09070 IPR036157 dUTPase-like superfamily JO41_09070 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase JO41_09070 IPR033704 dUTPase, trimeric JO41_09085 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09085 IPR029151 Periplasmic sensor-like domain superfamily JO41_09085 IPR003660 HAMP domain JO41_09085 IPR033479 Double Cache domain 1 JO41_09090 IPR005170 Transporter-associated domain JO41_09090 IPR000644 CBS domain JO41_09090 IPR002550 CNNM, transmembrane domain JO41_09090 IPR036318 FAD-binding, type PCMH-like superfamily JO41_09090 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_09105 IPR033463 Single cache domain 3 JO41_09105 IPR003660 HAMP domain JO41_09105 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09105 IPR029151 Periplasmic sensor-like domain superfamily JO41_09105 IPR004090 Chemotaxis methyl-accepting receptor JO41_09115 IPR023214 HAD superfamily JO41_09115 IPR036412 HAD-like superfamily JO41_09115 IPR006439 HAD hydrolase, subfamily IA JO41_09115 IPR041492 Haloacid dehalogenase-like hydrolase JO41_09115 IPR006549 HAD-superfamily hydrolase,subfamily IIIA JO41_09115 IPR037512 Phosphoglycolate phosphatase, prokaryotic JO41_09115 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic JO41_09115 IPR023198 Phosphoglycolate phosphatase-like, domain 2 JO41_09120 IPR000620 EamA domain JO41_09125 IPR024258 Protein of unknown function DUF3798 JO41_09130 IPR003593 AAA+ ATPase domain JO41_09130 IPR003439 ABC transporter-like JO41_09130 IPR017871 ABC transporter, conserved site JO41_09130 IPR015861 ABC transporter, ribose import, RbsA JO41_09130 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09150 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain JO41_09150 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_09150 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_09150 IPR002942 RNA-binding S4 domain JO41_09150 IPR036986 RNA-binding S4 domain superfamily JO41_09150 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site JO41_09150 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F JO41_09170 IPR035906 MetI-like superfamily JO41_09170 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_09170 IPR005769 ABC transporter, permease PhnE/PtxC JO41_09175 IPR003593 AAA+ ATPase domain JO41_09175 IPR012693 ABC transporter, phosphonate import, PhnC JO41_09175 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09175 IPR003439 ABC transporter-like JO41_09175 IPR017871 ABC transporter, conserved site JO41_09190 IPR004402 Purine nucleoside phosphorylase DeoD-type JO41_09190 IPR018016 Nucleoside phosphorylase, conserved site JO41_09190 IPR000845 Nucleoside phosphorylase domain JO41_09190 IPR035994 Nucleoside phosphorylase superfamily JO41_09245 IPR035938 Hemerythrin-like superfamily JO41_09245 IPR012827 Haemerythrin, metal-binding domain JO41_09245 IPR016131 Haemerythrin, iron-binding site JO41_09245 IPR012312 Haemerythrin-like JO41_09245 IPR023504 Bacteriohemerythrin-like protein JO41_09250 IPR013780 Glycosyl hydrolase, all-beta JO41_09250 IPR040697 Pullulanase, N1 domain JO41_09250 IPR004193 Glycoside hydrolase, family 13, N-terminal JO41_09250 IPR014756 Immunoglobulin E-set JO41_09250 IPR013783 Immunoglobulin-like fold JO41_09250 IPR006047 Glycosyl hydrolase, family 13, catalytic domain JO41_09250 IPR011840 Pullulanase, type I JO41_09250 IPR017853 Glycoside hydrolase superfamily JO41_09255 IPR006059 Bacterial extracellular solute-binding protein JO41_09255 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein JO41_09260 IPR032091 Maltogenic Amylase, C-terminal JO41_09260 IPR013783 Immunoglobulin-like fold JO41_09260 IPR017853 Glycoside hydrolase superfamily JO41_09260 IPR013780 Glycosyl hydrolase, all-beta JO41_09260 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain JO41_09260 IPR006047 Glycosyl hydrolase, family 13, catalytic domain JO41_09270 IPR035906 MetI-like superfamily JO41_09270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_09275 IPR035906 MetI-like superfamily JO41_09275 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_09290 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09290 IPR014016 UvrD-like helicase, ATP-binding domain JO41_09290 IPR014017 UvrD-like DNA helicase, C-terminal JO41_09290 IPR034739 UvrD/AddA helicase, N-terminal JO41_09290 IPR005751 ATP-dependent DNA helicase PcrA JO41_09290 IPR013986 DExx box DNA helicase domain superfamily JO41_09290 IPR000212 DNA helicase, UvrD/REP type JO41_09305 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA JO41_09305 IPR018211 Alcohol dehydrogenase, iron-type, conserved site JO41_09320 IPR004785 Ribose 5-phosphate isomerase B JO41_09320 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family JO41_09320 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily JO41_09330 IPR013113 FAD-binding 9, siderophore-interacting JO41_09330 IPR017927 FAD-binding domain, ferredoxin reductase-type JO41_09330 IPR003439 ABC transporter-like JO41_09330 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09330 IPR017871 ABC transporter, conserved site JO41_09330 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO41_09330 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_09330 IPR011527 ABC transporter type 1, transmembrane domain JO41_09330 IPR003593 AAA+ ATPase domain JO41_09330 IPR017938 Riboflavin synthase-like beta-barrel JO41_09330 IPR007037 Siderophore-interacting protein, C-terminal domain JO41_09335 IPR003593 AAA+ ATPase domain JO41_09335 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09335 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_09335 IPR003439 ABC transporter-like JO41_09335 IPR017871 ABC transporter, conserved site JO41_09335 IPR011917 ABC transporter, lipid A export, MsbA JO41_09335 IPR011527 ABC transporter type 1, transmembrane domain JO41_09335 IPR039421 Type I protein exporter JO41_09340 IPR004839 Aminotransferase, class I/classII JO41_09340 IPR022518 Aspartate 4-decarboxylase JO41_09340 IPR015424 Pyridoxal phosphate-dependent transferase JO41_09340 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_09340 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_09340 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site JO41_09345 IPR022457 Aspartate-alanine antiporter JO41_09345 IPR006512 YidE/YbjL duplication JO41_09400 IPR035801 Protein-ADP-ribose hydrolase, macro domain JO41_09400 IPR002589 Macro domain JO41_09435 IPR005648 Flagellar hook capping protein JO41_09440 IPR037058 Flagellar hook protein FlgE superfamily JO41_09440 IPR001444 Flagellar basal body rod protein, N-terminal JO41_09440 IPR019776 Flagellar basal body rod protein, conserved site JO41_09440 IPR011491 Flagellar hook protein FlgE JO41_09440 IPR020013 Flagellar hook-basal body protein, FlgE/F/G JO41_09440 IPR010930 Flagellar basal-body/hook protein, C-terminal domain JO41_09440 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like JO41_09450 IPR000540 Flagellar motor protein MotA, conserved site JO41_09450 IPR002898 MotA/TolQ/ExbB proton channel JO41_09455 IPR036737 OmpA-like domain superfamily JO41_09455 IPR006665 OmpA-like domain JO41_09455 IPR025713 Motility protein B, N-terminal domain JO41_09460 IPR005503 Flagellar basal body-associated protein FliL JO41_09465 IPR036429 SpoA-like superfamily JO41_09465 IPR028976 CheC-like superfamily JO41_09465 IPR001543 Surface presentation of antigen (SpoA) JO41_09465 IPR001689 Flagellar motor switch protein FliM JO41_09470 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb JO41_09470 IPR012826 Flagellar motor switch FliN JO41_09470 IPR007597 CheC-like protein JO41_09470 IPR001543 Surface presentation of antigen (SpoA) JO41_09470 IPR028976 CheC-like superfamily JO41_09470 IPR036429 SpoA-like superfamily JO41_09480 IPR005838 Type III secretion system inner membrane P protein JO41_09480 IPR005837 Flagellar transport protein FliP JO41_09485 IPR006305 Flagellar biosynthesis protein FliQ JO41_09485 IPR002191 Bacterial export protein family 3 JO41_09495 IPR006135 Type III secretion system substrate exporter JO41_09495 IPR006136 Flagellar biosynthetic protein FlhB JO41_09495 IPR029025 Type III secretion system substrate exporter, C-terminal JO41_09500 IPR006301 Flagellar biosynthesis protein FlhA JO41_09500 IPR042196 FHIPEP, domain 4 JO41_09500 IPR001712 Type III secretion system FHIPEP JO41_09500 IPR042194 FHIPEP, domain 1 JO41_09500 IPR042193 FHIPEP, domain 3 JO41_09505 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO41_09505 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09505 IPR020006 Flagellar biosynthesis protein FlhF JO41_09505 IPR003593 AAA+ ATPase domain JO41_09510 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 JO41_09510 IPR025501 ATP binding protein MinD JO41_09510 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09515 IPR001173 Glycosyltransferase 2-like JO41_09515 IPR029044 Nucleotide-diphospho-sugar transferases JO41_09520 IPR002528 Multi antimicrobial extrusion protein JO41_09530 IPR012340 Nucleic acid-binding, OB-fold JO41_09530 IPR001900 Ribonuclease II/R JO41_09535 IPR022984 M18 family aminopeptidase 2, putative JO41_09535 IPR001948 Peptidase M18 JO41_09535 IPR023358 Peptidase M18, domain 2 JO41_09545 IPR003777 XdhC- CoxI JO41_09545 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family JO41_09545 IPR027051 XdhC Rossmann domain JO41_09550 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain JO41_09550 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain JO41_09550 IPR016195 Polymerase/histidinol phosphatase-like JO41_09550 IPR003141 Polymerase/histidinol phosphatase, N-terminal JO41_09550 IPR004013 PHP domain JO41_09550 IPR004805 DNA polymerase III, alpha subunit JO41_09550 IPR040982 DNA polymerase III alpha subunit finger domain JO41_09550 IPR029460 DNA polymerase, helix-hairpin-helix motif JO41_09560 IPR030158 Galactoside transport system permease protein MglC JO41_09560 IPR001851 ABC transporter, permease JO41_09565 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09565 IPR003593 AAA+ ATPase domain JO41_09565 IPR003439 ABC transporter-like JO41_09565 IPR015862 ABC transporter, galactose import, MglA JO41_09565 IPR017871 ABC transporter, conserved site JO41_09570 IPR025997 Periplasmic binding protein JO41_09570 IPR028082 Periplasmic binding protein-like I JO41_09570 IPR040740 MglB-2, periplasmic binding protein domain JO41_09575 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_09575 IPR002300 Aminoacyl-tRNA synthetase, class Ia JO41_09575 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_09575 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding JO41_09575 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_09575 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm JO41_09575 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily JO41_09575 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm JO41_09575 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain JO41_09575 IPR002303 Valine-tRNA ligase JO41_09575 IPR033705 Valyl tRNA synthetase, anticodon-binding domain JO41_09595 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like JO41_09615 IPR006070 YrdC-like domain JO41_09615 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily JO41_09620 IPR004107 Integrase, SAM-like, N-terminal JO41_09620 IPR013762 Integrase-like, catalytic domain superfamily JO41_09620 IPR002104 Integrase, catalytic domain JO41_09620 IPR011010 DNA breaking-rejoining enzyme, catalytic core JO41_09620 IPR023009 Tyrosine recombinase XerC/XerD JO41_09620 IPR010998 Integrase/recombinase, N-terminal JO41_09625 IPR005733 DNA topoisomerase I, bacterial-type JO41_09625 IPR034149 DNA topoisomerase 1, TOPRIM domain JO41_09625 IPR023406 DNA topoisomerase, type IA, active site JO41_09625 IPR000380 DNA topoisomerase, type IA JO41_09625 IPR003601 DNA topoisomerase, type IA, domain 2 JO41_09625 IPR028612 DNA topoisomerase I, type IA JO41_09625 IPR003602 DNA topoisomerase, type IA, DNA-binding domain JO41_09625 IPR013497 DNA topoisomerase, type IA, central JO41_09625 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 JO41_09625 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 JO41_09625 IPR023405 DNA topoisomerase, type IA, core domain JO41_09625 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 JO41_09625 IPR013498 DNA topoisomerase, type IA, zn finger JO41_09625 IPR006171 TOPRIM domain JO41_09630 IPR003488 DNA recombination-mediator protein A JO41_09630 IPR041614 DprA, winged helix domain JO41_09630 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_09645 IPR038770 Sodium/solute symporter superfamily JO41_09645 IPR006153 Cation/H+ exchanger JO41_09645 IPR004771 K+/H+ exchanger JO41_09650 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_09650 IPR007848 Methyltransferase small domain JO41_09650 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_09650 IPR023543 rRNA small subunit methyltransferase C JO41_09650 IPR013675 Methyltransferase small, N-terminal JO41_09655 IPR029066 PLP-binding barrel JO41_09655 IPR001608 Alanine racemase, N-terminal JO41_09655 IPR011079 Alanine racemase, C-terminal JO41_09655 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal JO41_09655 IPR000821 Alanine racemase JO41_09655 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site JO41_09660 IPR005217 Iron permease FTR1-like JO41_09660 IPR004923 Iron permease FTR1/Fip1/EfeU JO41_09660 IPR036259 MFS transporter superfamily JO41_09665 IPR038482 Periplasmic metal-binding protein tp34-type superfamily JO41_09665 IPR018470 Periplasmic metal-binding protein Tp34-type JO41_09680 IPR003439 ABC transporter-like JO41_09680 IPR017871 ABC transporter, conserved site JO41_09680 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO41_09680 IPR025857 MacB-like periplasmic core domain JO41_09680 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09680 IPR003838 ABC transporter permease protein domain JO41_09680 IPR003593 AAA+ ATPase domain JO41_09685 IPR003439 ABC transporter-like JO41_09685 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09685 IPR003593 AAA+ ATPase domain JO41_09685 IPR017871 ABC transporter, conserved site JO41_09720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_09720 IPR013216 Methyltransferase type 11 JO41_09765 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain JO41_09765 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO41_09765 IPR009000 Translation protein, beta-barrel domain superfamily JO41_09765 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily JO41_09765 IPR003156 DHHA1 domain JO41_09765 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria JO41_09765 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal JO41_09765 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO41_09765 IPR002318 Alanine-tRNA ligase, class IIc JO41_09770 IPR029151 Periplasmic sensor-like domain superfamily JO41_09770 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09770 IPR033479 Double Cache domain 1 JO41_09770 IPR003660 HAMP domain JO41_09780 IPR018982 RQC domain JO41_09780 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_09780 IPR001650 Helicase, C-terminal JO41_09780 IPR014001 Helicase superfamily 1/2, ATP-binding domain JO41_09780 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09780 IPR010997 HRDC-like superfamily JO41_09780 IPR011545 DEAD/DEAH box helicase domain JO41_09780 IPR004589 DNA helicase, ATP-dependent, RecQ type JO41_09780 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial JO41_09780 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain JO41_09780 IPR002121 HRDC domain JO41_09790 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type JO41_09790 IPR041498 Bacterial Ig domain JO41_09790 IPR006179 5'-Nucleotidase/apyrase JO41_09790 IPR029052 Metallo-dependent phosphatase-like JO41_09790 IPR006146 5'-Nucleotidase, conserved site JO41_09790 IPR036907 5'-Nucleotidase, C-terminal domain superfamily JO41_09790 IPR008334 5'-Nucleotidase, C-terminal JO41_09800 IPR000873 AMP-dependent synthetase/ligase JO41_09800 IPR042099 AMP-dependent synthetase-like superfamily JO41_09800 IPR020845 AMP-binding, conserved site JO41_09805 IPR039384 HINT family JO41_09805 IPR019808 Histidine triad, conserved site JO41_09805 IPR036265 HIT-like superfamily JO41_09805 IPR001310 Histidine triad (HIT) protein JO41_09805 IPR011146 HIT-like domain JO41_09810 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase JO41_09810 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_09810 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_09810 IPR013750 GHMP kinase, C-terminal domain JO41_09810 IPR036554 GHMP kinase, C-terminal domain superfamily JO41_09810 IPR006204 GHMP kinase N-terminal domain JO41_09815 IPR007170 Stage V sporulation protein G JO41_09815 IPR036751 Stage V sporulation protein G superfamily JO41_09825 IPR001021 Ribosomal protein L25, long-form JO41_09825 IPR020057 Ribosomal protein L25, beta domain JO41_09825 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily JO41_09825 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal JO41_09825 IPR037121 Ribosomal protein L25, C-terminal JO41_09825 IPR029751 Ribosomal protein L25 JO41_09830 IPR012094 tRNA(Ile)-lysidine synthase JO41_09830 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal JO41_09830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_09830 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal JO41_09830 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal JO41_09835 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_09845 IPR011057 Mss4-like superfamily JO41_09845 IPR002569 Peptide methionine sulphoxide reductase MsrA JO41_09845 IPR002579 Peptide methionine sulphoxide reductase MrsB JO41_09845 IPR028427 Peptide methionine sulfoxide reductase JO41_09845 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily JO41_09855 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09855 IPR033479 Double Cache domain 1 JO41_09855 IPR003660 HAMP domain JO41_09855 IPR029151 Periplasmic sensor-like domain superfamily JO41_09860 IPR036291 NAD(P)-binding domain superfamily JO41_09860 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain JO41_09860 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site JO41_09860 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO41_09865 IPR004445 Sodium/glutamate symport carrier protein GltS JO41_09875 IPR005481 Biotin carboxylase-like, N-terminal domain JO41_09875 IPR000089 Biotin/lipoyl attachment JO41_09875 IPR005482 Biotin carboxylase, C-terminal JO41_09875 IPR011764 Biotin carboxylation domain JO41_09875 IPR001882 Biotin-binding site JO41_09875 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain JO41_09875 IPR016185 Pre-ATP-grasp domain superfamily JO41_09875 IPR011761 ATP-grasp fold JO41_09875 IPR011053 Single hybrid motif JO41_09875 IPR011054 Rudiment single hybrid motif JO41_09880 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit JO41_09885 IPR037171 NagB/RpiA transferase-like JO41_09885 IPR004165 Coenzyme A transferase family I JO41_09890 IPR037171 NagB/RpiA transferase-like JO41_09890 IPR004165 Coenzyme A transferase family I JO41_09895 IPR034733 Acetyl-CoA carboxylase JO41_09895 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal JO41_09895 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal JO41_09895 IPR029045 ClpP/crotonase-like domain superfamily JO41_09900 IPR004445 Sodium/glutamate symport carrier protein GltS JO41_09905 IPR008275 CoA enzyme activase JO41_09905 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type JO41_09910 IPR010327 FldB/FldC dehydratase alpha/beta subunit JO41_09915 IPR010327 FldB/FldC dehydratase alpha/beta subunit JO41_09925 IPR002481 Ferric-uptake regulator JO41_09925 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_09925 IPR036390 Winged helix DNA-binding domain superfamily JO41_09940 IPR020084 NUDIX hydrolase, conserved site JO41_09940 IPR000086 NUDIX hydrolase domain JO41_09940 IPR003561 Mutator MutT JO41_09940 IPR020476 NUDIX hydrolase JO41_09940 IPR015797 NUDIX hydrolase-like domain superfamily JO41_09950 IPR041719 Ferritin, prokaryotic-type JO41_09950 IPR001519 Ferritin JO41_09950 IPR012347 Ferritin-like JO41_09950 IPR009040 Ferritin-like diiron domain JO41_09950 IPR008331 Ferritin/DPS protein domain JO41_09950 IPR009078 Ferritin-like superfamily JO41_09955 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_09955 IPR036612 K Homology domain, type 1 superfamily JO41_09955 IPR004087 K Homology domain JO41_09955 IPR003714 PhoH-like protein JO41_09960 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain JO41_09960 IPR003607 HD/PDEase domain JO41_09960 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain JO41_09960 IPR006675 HDIG domain JO41_09960 IPR006674 HD domain JO41_09965 IPR002036 Endoribonuclease YbeY JO41_09965 IPR020549 Endoribonuclease YbeY, conserved site JO41_09965 IPR023091 Metalloprotease catalytic domain superfamily, predicted JO41_09970 IPR000644 CBS domain JO41_09970 IPR036318 FAD-binding, type PCMH-like superfamily JO41_09970 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_09970 IPR005170 Transporter-associated domain JO41_09980 IPR037518 MPN domain JO41_09980 IPR025657 RadC-like JAB domain JO41_09980 IPR010994 RuvA domain 2-like JO41_09980 IPR001405 Uncharacterised protein family UPF0758 JO41_09980 IPR020891 Uncharacterised protein family UPF0758, conserved site JO41_09995 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO41_09995 IPR001279 Metallo-beta-lactamase JO41_09995 IPR029039 Flavoprotein-like superfamily JO41_09995 IPR008254 Flavodoxin/nitric oxide synthase JO41_09995 IPR002563 Flavin reductase like domain JO41_09995 IPR012349 FMN-binding split barrel JO41_10000 IPR002547 tRNA-binding domain JO41_10000 IPR012340 Nucleic acid-binding, OB-fold JO41_10010 IPR000873 AMP-dependent synthetase/ligase JO41_10010 IPR020845 AMP-binding, conserved site JO41_10010 IPR025110 AMP-binding enzyme, C-terminal domain JO41_10010 IPR020459 AMP-binding JO41_10010 IPR042099 AMP-dependent synthetase-like superfamily JO41_10015 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein JO41_10015 IPR003841 Sodium-dependent phosphate transport protein JO41_10020 IPR010121 Pyruvate, phosphate dikinase JO41_10020 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding JO41_10020 IPR040442 Pyruvate kinase-like domain superfamily JO41_10020 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily JO41_10020 IPR000121 PEP-utilising enzyme, C-terminal JO41_10020 IPR018274 PEP-utilising enzyme, active site JO41_10020 IPR008279 PEP-utilising enzyme, mobile domain JO41_10020 IPR013815 ATP-grasp fold, subdomain 1 JO41_10020 IPR023151 PEP-utilising enzyme, conserved site JO41_10020 IPR036637 Phosphohistidine domain superfamily JO41_10065 IPR033728 Threonine-tRNA ligase catalytic core domain JO41_10065 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily JO41_10065 IPR002320 Threonine-tRNA ligase, class IIa JO41_10065 IPR036621 Anticodon-binding domain superfamily JO41_10065 IPR004154 Anticodon-binding JO41_10065 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_10065 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO41_10065 IPR012947 Threonyl/alanyl tRNA synthetase, SAD JO41_10075 IPR036043 Phosphoglycerate kinase superfamily JO41_10075 IPR015824 Phosphoglycerate kinase, N-terminal JO41_10075 IPR001576 Phosphoglycerate kinase JO41_10105 IPR035196 Protein of unknown function DUF5312 JO41_10110 IPR026024 Chemotaxis protein methyltransferase CheR JO41_10110 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal JO41_10110 IPR000780 MCP methyltransferase, CheR-type JO41_10110 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal JO41_10110 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily JO41_10110 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_10115 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase JO41_10115 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type JO41_10115 IPR035909 Methylesterase CheB, C-terminal JO41_10115 IPR011006 CheY-like superfamily JO41_10115 IPR001789 Signal transduction response regulator, receiver domain JO41_10130 IPR018490 Cyclic nucleotide-binding-like JO41_10130 IPR000595 Cyclic nucleotide-binding domain JO41_10130 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_10130 IPR012318 Crp-type HTH domain JO41_10130 IPR014710 RmlC-like jelly roll fold JO41_10130 IPR036390 Winged helix DNA-binding domain superfamily JO41_10130 IPR018488 Cyclic nucleotide-binding, conserved site JO41_10135 IPR006094 FAD linked oxidase, N-terminal JO41_10135 IPR016167 FAD-binding, type PCMH, subdomain 1 JO41_10135 IPR036318 FAD-binding, type PCMH-like superfamily JO41_10135 IPR016166 FAD-binding domain, PCMH-type JO41_10135 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase JO41_10135 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily JO41_10135 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_10135 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal JO41_10145 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_10145 IPR032678 tRNA synthetases class I, catalytic domain JO41_10145 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_10145 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR JO41_10145 IPR015803 Cysteine-tRNA ligase JO41_10145 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase JO41_10150 IPR013324 RNA polymerase sigma factor, region 3/4-like JO41_10150 IPR013325 RNA polymerase sigma factor, region 2 JO41_10150 IPR028617 RNA polymerase sigma factor FliA JO41_10150 IPR012845 RNA polymerase sigma factor, FliA/WhiG JO41_10150 IPR007624 RNA polymerase sigma-70 region 3 JO41_10150 IPR007627 RNA polymerase sigma-70 region 2 JO41_10150 IPR000943 RNA polymerase sigma-70 JO41_10150 IPR014284 RNA polymerase sigma-70 like domain JO41_10150 IPR007630 RNA polymerase sigma-70 region 4 JO41_10165 IPR036393 Acetylglutamate kinase-like superfamily JO41_10165 IPR001048 Aspartate/glutamate/uridylate kinase JO41_10165 IPR011817 Uridylate kinase JO41_10165 IPR015963 Uridylate kinase, bacteria JO41_10170 IPR018253 DnaJ domain, conserved site JO41_10170 IPR008971 HSP40/DnaJ peptide-binding JO41_10170 IPR001305 Heat shock protein DnaJ, cysteine-rich domain JO41_10170 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily JO41_10170 IPR036869 Chaperone J-domain superfamily JO41_10170 IPR001623 DnaJ domain JO41_10170 IPR012724 Chaperone DnaJ JO41_10170 IPR002939 Chaperone DnaJ, C-terminal JO41_10175 IPR004368 Translation initiation factor IF-1 JO41_10175 IPR022967 RNA-binding domain, S1 JO41_10175 IPR006196 RNA-binding domain, S1, IF1 type JO41_10175 IPR012340 Nucleic acid-binding, OB-fold JO41_10195 IPR013785 Aldolase-type TIM barrel JO41_10195 IPR026019 Ribulose-phosphate 3-epimerase JO41_10195 IPR000056 Ribulose-phosphate 3-epimerase-like JO41_10195 IPR011060 Ribulose-phosphate binding barrel JO41_10215 IPR011005 Dihydropteroate synthase-like JO41_10215 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial JO41_10215 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type JO41_10220 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_10225 IPR014445 Glutamine-dependent NAD(+) synthetase JO41_10225 IPR041856 Glutamine-dependent NAD+ synthetase, C-terminal JO41_10225 IPR022310 NAD/GMP synthase JO41_10225 IPR003694 NAD(+) synthetase JO41_10225 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_10225 IPR036526 Carbon-nitrogen hydrolase superfamily JO41_10225 IPR003010 Carbon-nitrogen hydrolase JO41_10250 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10250 IPR006073 GTP binding domain JO41_10250 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC JO41_10250 IPR030393 EngB-type guanine nucleotide-binding (G) domain JO41_10255 IPR035476 Phosphoglucose isomerase, SIS domain 1 JO41_10255 IPR035482 Phosphoglucose isomerase, SIS domain 2 JO41_10255 IPR018189 Phosphoglucose isomerase, conserved site JO41_10255 IPR023096 Phosphoglucose isomerase, C-terminal JO41_10255 IPR001672 Phosphoglucose isomerase (PGI) JO41_10265 IPR001926 Pyridoxal-phosphate dependent enzyme JO41_10265 IPR010081 Diaminopropionate ammonia-lyase JO41_10265 IPR019871 Diaminopropionate ammonia-lyase, subgroup JO41_10265 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme JO41_10280 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain JO41_10280 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like JO41_10280 IPR001279 Metallo-beta-lactamase JO41_10280 IPR022712 Beta-Casp domain JO41_10285 IPR013123 RNA 2-O ribose methyltransferase, substrate binding JO41_10285 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO41_10285 IPR029028 Alpha/beta knot methyltransferases JO41_10285 IPR029064 50S ribosomal protein L30e-like JO41_10285 IPR004441 RNA methyltransferase TrmH family JO41_10285 IPR001537 tRNA/rRNA methyltransferase, SpoU type JO41_10285 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB JO41_10290 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal JO41_10290 IPR029028 Alpha/beta knot methyltransferases JO41_10290 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted JO41_10290 IPR001537 tRNA/rRNA methyltransferase, SpoU type JO41_10290 IPR004441 RNA methyltransferase TrmH family JO41_10290 IPR013123 RNA 2-O ribose methyltransferase, substrate binding JO41_10290 IPR029064 50S ribosomal protein L30e-like JO41_10310 IPR002035 von Willebrand factor, type A JO41_10310 IPR036465 von Willebrand factor A-like domain superfamily JO41_10315 IPR041037 Pallilysin beta barrel domain JO41_10320 IPR002155 Thiolase JO41_10320 IPR016039 Thiolase-like JO41_10320 IPR020615 Thiolase, acyl-enzyme intermediate active site JO41_10320 IPR020616 Thiolase, N-terminal JO41_10320 IPR020613 Thiolase, conserved site JO41_10320 IPR020617 Thiolase, C-terminal JO41_10320 IPR020610 Thiolase, active site JO41_10335 IPR023458 Methionine-tRNA ligase, type 1 JO41_10335 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding JO41_10335 IPR002547 tRNA-binding domain JO41_10335 IPR012340 Nucleic acid-binding, OB-fold JO41_10335 IPR014758 Methionyl-tRNA synthetase JO41_10335 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site JO41_10335 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain JO41_10335 IPR033911 Methioninyl-tRNA synthetase core domain JO41_10335 IPR015413 Methionyl/Leucyl tRNA synthetase JO41_10335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_10335 IPR029038 Methionyl-tRNA synthetase, Zn-domain JO41_10340 IPR003593 AAA+ ATPase domain JO41_10340 IPR003439 ABC transporter-like JO41_10340 IPR017871 ABC transporter, conserved site JO41_10340 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10355 IPR037923 Transcription regulator HTH-like JO41_10355 IPR018060 DNA binding HTH domain, AraC-type JO41_10355 IPR018062 HTH domain AraC-type, conserved site JO41_10355 IPR014710 RmlC-like jelly roll fold JO41_10355 IPR003313 AraC-type arabinose-binding/dimerisation domain JO41_10355 IPR009057 Homeobox-like domain superfamily JO41_10370 IPR003593 AAA+ ATPase domain JO41_10370 IPR003439 ABC transporter-like JO41_10370 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10370 IPR017871 ABC transporter, conserved site JO41_10380 IPR013113 FAD-binding 9, siderophore-interacting JO41_10380 IPR017871 ABC transporter, conserved site JO41_10380 IPR003439 ABC transporter-like JO41_10380 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10380 IPR017927 FAD-binding domain, ferredoxin reductase-type JO41_10380 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO41_10380 IPR011527 ABC transporter type 1, transmembrane domain JO41_10380 IPR017938 Riboflavin synthase-like beta-barrel JO41_10380 IPR007037 Siderophore-interacting protein, C-terminal domain JO41_10380 IPR003593 AAA+ ATPase domain JO41_10380 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10390 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_10390 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_10390 IPR011639 Restriction modification methylase Eco57I JO41_10410 IPR039421 Type I protein exporter JO41_10410 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10410 IPR011917 ABC transporter, lipid A export, MsbA JO41_10410 IPR017871 ABC transporter, conserved site JO41_10410 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10410 IPR011527 ABC transporter type 1, transmembrane domain JO41_10410 IPR003593 AAA+ ATPase domain JO41_10410 IPR003439 ABC transporter-like JO41_10415 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_10415 IPR009057 Homeobox-like domain superfamily JO41_10415 IPR001647 DNA-binding HTH domain, TetR-type JO41_10415 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_10415 IPR013572 Transcription regulator MAATS, C-terminal JO41_10430 IPR003593 AAA+ ATPase domain JO41_10430 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10430 IPR017871 ABC transporter, conserved site JO41_10430 IPR003439 ABC transporter-like JO41_10475 IPR000594 THIF-type NAD/FAD binding fold JO41_10475 IPR035985 Ubiquitin-activating enzyme JO41_10480 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site JO41_10480 IPR000715 Glycosyl transferase, family 4 JO41_10480 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase JO41_10485 IPR002176 Crossover junction endodeoxyribonuclease RuvC JO41_10485 IPR036397 Ribonuclease H superfamily JO41_10485 IPR012337 Ribonuclease H-like superfamily JO41_10490 IPR022907 VapC family JO41_10490 IPR002716 PIN domain JO41_10490 IPR029060 PIN-like domain superfamily JO41_10505 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain JO41_10510 IPR029062 Class I glutamine amidotransferase-like JO41_10510 IPR017926 Glutamine amidotransferase JO41_10510 IPR001674 GMP synthase, C-terminal JO41_10510 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_10510 IPR025777 GMP synthetase ATP pyrophosphatase domain JO41_10510 IPR022955 GMP synthase JO41_10510 IPR004739 GMP synthase, glutamine amidotransferase JO41_10515 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV JO41_10515 IPR003593 AAA+ ATPase domain JO41_10515 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal JO41_10515 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily JO41_10515 IPR001270 ClpA/B family JO41_10515 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10515 IPR021029 DNA polymerase III, tau subunit, domain V JO41_10515 IPR012763 DNA polymerase III, subunit gamma/ tau JO41_10515 IPR022754 DNA polymerase III, gamma subunit, domain III JO41_10530 IPR004401 Nucleoid-associated protein YbaB/EbfC family JO41_10530 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily JO41_10535 IPR006171 TOPRIM domain JO41_10535 IPR015967 Recombination protein RecR, conserved site JO41_10535 IPR034137 RecR, TOPRIM domain JO41_10535 IPR000093 DNA recombination protein RecR JO41_10535 IPR023628 Recombination protein RecR, C4-type zinc finger JO41_10535 IPR023627 Recombination protein RecR JO41_10560 IPR016169 FAD-binding, type PCMH, subdomain 2 JO41_10560 IPR017612 Xanthine dehydrogenase C subunit JO41_10560 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily JO41_10560 IPR002346 Molybdopterin dehydrogenase, FAD-binding JO41_10560 IPR016166 FAD-binding domain, PCMH-type JO41_10560 IPR036318 FAD-binding, type PCMH-like superfamily JO41_10570 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead JO41_10570 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily JO41_10570 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily JO41_10570 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding JO41_10575 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase JO41_10575 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_10575 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_10575 IPR015424 Pyridoxal phosphate-dependent transferase JO41_10580 IPR019800 Glycoside hydrolase, family 3, active site JO41_10580 IPR017853 Glycoside hydrolase superfamily JO41_10580 IPR002772 Glycoside hydrolase family 3 C-terminal domain JO41_10580 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily JO41_10580 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily JO41_10580 IPR001764 Glycoside hydrolase, family 3, N-terminal JO41_10585 IPR008302 Uncharacterised conserved protein UCP016719 JO41_10590 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_10595 IPR006665 OmpA-like domain JO41_10595 IPR039567 Glycine zipper domain JO41_10595 IPR036737 OmpA-like domain superfamily JO41_10595 IPR006690 Outer membrane protein, OmpA-like, conserved site JO41_10595 IPR006664 Outer membrane protein, bacterial JO41_10600 IPR008258 Transglycosylase SLT domain 1 JO41_10600 IPR023346 Lysozyme-like domain superfamily JO41_10600 IPR036779 LysM domain superfamily JO41_10600 IPR000189 Prokaryotic transglycosylase, active site JO41_10600 IPR018392 LysM domain JO41_10650 IPR007438 Protein of unknown function DUF488 JO41_10675 IPR013264 DNA primase, catalytic core, N-terminal JO41_10675 IPR034151 Bacterial DnaG primase, TOPRIM domain JO41_10675 IPR036977 DNA Primase, CHC2-type zinc finger JO41_10675 IPR006295 DNA primase, DnaG JO41_10675 IPR030846 DNA primase DnaG, bacteria JO41_10675 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily JO41_10675 IPR006171 TOPRIM domain JO41_10675 IPR002694 Zinc finger, CHC2-type JO41_10680 IPR007127 RNA polymerase sigma factor 70, region 1.1 JO41_10680 IPR013324 RNA polymerase sigma factor, region 3/4-like JO41_10680 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_10680 IPR013325 RNA polymerase sigma factor, region 2 JO41_10680 IPR000943 RNA polymerase sigma-70 JO41_10680 IPR009042 RNA polymerase sigma-70 region 1.2 JO41_10680 IPR007627 RNA polymerase sigma-70 region 2 JO41_10680 IPR007624 RNA polymerase sigma-70 region 3 JO41_10680 IPR014284 RNA polymerase sigma-70 like domain JO41_10680 IPR028630 RNA polymerase sigma factor RpoD JO41_10680 IPR007630 RNA polymerase sigma-70 region 4 JO41_10680 IPR012760 RNA polymerase sigma factor RpoD, C-terminal JO41_10700 IPR004753 Cell shape determining protein MreB JO41_10715 IPR001460 Penicillin-binding protein, transpeptidase JO41_10715 IPR017790 Penicillin-binding protein 2 JO41_10715 IPR036138 Penicillin-binding protein, dimerisation domain superfamily JO41_10715 IPR005311 Penicillin-binding protein, dimerisation domain JO41_10715 IPR012338 Beta-lactamase/transpeptidase-like JO41_10720 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA JO41_10720 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB JO41_10720 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site JO41_10730 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10730 IPR000850 Adenylate kinase/UMP-CMP kinase JO41_10730 IPR033690 Adenylate kinase, conserved site JO41_10730 IPR007862 Adenylate kinase, active site lid domain JO41_10730 IPR006259 Adenylate kinase subfamily JO41_10735 IPR004520 tRNA modification GTPase MnmE JO41_10735 IPR006073 GTP binding domain JO41_10735 IPR031168 TrmE-type guanine nucleotide-binding domain JO41_10735 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 JO41_10735 IPR005225 Small GTP-binding protein domain JO41_10735 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10735 IPR025867 MnmE, helical domain JO41_10735 IPR027368 tRNA modification GTPase MnmE domain 2 JO41_10735 IPR018948 GTP-binding protein TrmE, N-terminal JO41_10740 IPR003439 ABC transporter-like JO41_10740 IPR003593 AAA+ ATPase domain JO41_10740 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10760 IPR007685 RelA/SpoT JO41_10765 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10765 IPR039421 Type I protein exporter JO41_10765 IPR003439 ABC transporter-like JO41_10765 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10765 IPR011527 ABC transporter type 1, transmembrane domain JO41_10765 IPR003593 AAA+ ATPase domain JO41_10765 IPR017871 ABC transporter, conserved site JO41_10765 IPR011917 ABC transporter, lipid A export, MsbA JO41_10775 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain JO41_10775 IPR007037 Siderophore-interacting protein, C-terminal domain JO41_10775 IPR017938 Riboflavin synthase-like beta-barrel JO41_10775 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10775 IPR017927 FAD-binding domain, ferredoxin reductase-type JO41_10775 IPR003593 AAA+ ATPase domain JO41_10775 IPR013113 FAD-binding 9, siderophore-interacting JO41_10775 IPR011527 ABC transporter type 1, transmembrane domain JO41_10775 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10775 IPR003439 ABC transporter-like JO41_10775 IPR017871 ABC transporter, conserved site JO41_10790 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_10790 IPR009057 Homeobox-like domain superfamily JO41_10790 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_10790 IPR032551 HTH-type transcriptional repressor, C-terminal JO41_10790 IPR001647 DNA-binding HTH domain, TetR-type JO41_10820 IPR018107 Sodium:dicarboxylate symporter, conserved site JO41_10820 IPR001991 Sodium:dicarboxylate symporter JO41_10820 IPR036458 Sodium:dicarboxylate symporter superfamily JO41_10820 IPR023954 C4-dicarboxylate transport protein JO41_10840 IPR005144 ATP-cone domain JO41_10840 IPR003796 Ribonucleotide reductase regulator NrdR-like JO41_10850 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt JO41_10860 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 JO41_10860 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10860 IPR025501 ATP binding protein MinD JO41_10870 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site JO41_10870 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 JO41_10870 IPR036291 NAD(P)-binding domain superfamily JO41_10870 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO41_10870 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain JO41_10875 IPR001107 Band 7 domain JO41_10875 IPR036013 Band 7/SPFH domain superfamily JO41_10875 IPR010201 HflK JO41_10880 IPR001107 Band 7 domain JO41_10880 IPR036013 Band 7/SPFH domain superfamily JO41_10880 IPR010200 HflC JO41_10890 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB JO41_10890 IPR028362 Alginate O-acetyltransferase AlgI JO41_10890 IPR004299 Membrane bound O-acyl transferase, MBOAT JO41_10905 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site JO41_10905 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm JO41_10905 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_10905 IPR011530 Ribosomal RNA adenine dimethylase JO41_10905 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal JO41_10905 IPR023165 rRNA adenine dimethylase-like JO41_10915 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_10915 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_10915 IPR006225 Pseudouridine synthase, RluC/RluD JO41_10915 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_10920 IPR006145 Pseudouridine synthase, RsuA/RluA JO41_10920 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site JO41_10920 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_10930 IPR024370 PBP domain JO41_10930 IPR011862 Phosphate binding protein JO41_10960 IPR029151 Periplasmic sensor-like domain superfamily JO41_10960 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO41_10960 IPR003660 HAMP domain JO41_10960 IPR029787 Nucleotide cyclase JO41_10960 IPR033479 Double Cache domain 1 JO41_10965 IPR003439 ABC transporter-like JO41_10965 IPR003593 AAA+ ATPase domain JO41_10965 IPR011527 ABC transporter type 1, transmembrane domain JO41_10965 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10965 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC JO41_10965 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10970 IPR003593 AAA+ ATPase domain JO41_10970 IPR003439 ABC transporter-like JO41_10970 IPR017871 ABC transporter, conserved site JO41_10970 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_10970 IPR011527 ABC transporter type 1, transmembrane domain JO41_10970 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10975 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_10975 IPR017871 ABC transporter, conserved site JO41_10975 IPR040582 MalK, OB fold domain JO41_10975 IPR003593 AAA+ ATPase domain JO41_10975 IPR003439 ABC transporter-like JO41_10975 IPR008995 Molybdate/tungstate binding, C-terminal JO41_10975 IPR005116 Transport-associated OB, type 1 JO41_11000 IPR012337 Ribonuclease H-like superfamily JO41_11000 IPR019760 DNA-directed DNA polymerase, family A, conserved site JO41_11000 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal JO41_11000 IPR002562 3'-5' exonuclease domain JO41_11000 IPR001098 DNA-directed DNA polymerase, family A, palm domain JO41_11000 IPR020045 DNA polymerase I-like, H3TH domain JO41_11000 IPR018320 DNA polymerase 1 JO41_11000 IPR002298 DNA polymerase A JO41_11000 IPR013520 Exonuclease, RNase T/DNA polymerase III JO41_11000 IPR002421 5'-3' exonuclease, N-terminal JO41_11000 IPR008918 Helix-hairpin-helix motif, class 2 JO41_11000 IPR029060 PIN-like domain superfamily JO41_11000 IPR036397 Ribonuclease H superfamily JO41_11000 IPR036279 5'-3' exonuclease, C-terminal domain superfamily JO41_11005 IPR029062 Class I glutamine amidotransferase-like JO41_11005 IPR004468 CTP synthase JO41_11005 IPR033828 CTP synthase GATase domain JO41_11005 IPR017456 CTP synthase, N-terminal JO41_11005 IPR017926 Glutamine amidotransferase JO41_11005 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11015 IPR001972 Stomatin family JO41_11015 IPR018080 Band 7/stomatin-like, conserved site JO41_11015 IPR001107 Band 7 domain JO41_11015 IPR036013 Band 7/SPFH domain superfamily JO41_11030 IPR023382 Adenine nucleotide alpha hydrolase-like domains JO41_11030 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold JO41_11030 IPR004506 tRNA-specific 2-thiouridylase JO41_11040 IPR020922 dITP/XTP pyrophosphatase JO41_11040 IPR002637 Ham1-like protein JO41_11040 IPR029001 Inosine triphosphate pyrophosphatase-like JO41_11045 IPR004400 Urease accessory protein UreG JO41_11045 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11045 IPR003495 CobW/HypB/UreG, nucleotide-binding domain JO41_11050 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ JO41_11050 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11050 IPR017871 ABC transporter, conserved site JO41_11050 IPR003439 ABC transporter-like JO41_11050 IPR003593 AAA+ ATPase domain JO41_11055 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11055 IPR029151 Periplasmic sensor-like domain superfamily JO41_11055 IPR003660 HAMP domain JO41_11055 IPR033479 Double Cache domain 1 JO41_11060 IPR025110 AMP-binding enzyme, C-terminal domain JO41_11060 IPR000873 AMP-dependent synthetase/ligase JO41_11060 IPR020845 AMP-binding, conserved site JO41_11065 IPR000064 Endopeptidase, NLPC/P60 domain JO41_11065 IPR038765 Papain-like cysteine peptidase superfamily JO41_11070 IPR013328 6-phosphogluconate dehydrogenase, domain 2 JO41_11070 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent JO41_11070 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal JO41_11070 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal JO41_11070 IPR036291 NAD(P)-binding domain superfamily JO41_11070 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily JO41_11075 IPR029479 Nitroreductase JO41_11075 IPR000415 Nitroreductase-like JO41_11075 IPR016446 Flavin oxidoreductase Frp family JO41_11100 IPR012337 Ribonuclease H-like superfamily JO41_11100 IPR036397 Ribonuclease H superfamily JO41_11100 IPR022898 Ribonuclease HII JO41_11100 IPR001352 Ribonuclease HII/HIII JO41_11100 IPR024567 Ribonuclease HII/HIII domain JO41_11140 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11140 IPR003395 RecF/RecN/SMC, N-terminal JO41_11140 IPR004604 DNA recombination/repair protein RecN JO41_11145 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal JO41_11145 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily JO41_11145 IPR002504 NAD kinase JO41_11145 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal JO41_11150 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase JO41_11150 IPR015424 Pyridoxal phosphate-dependent transferase JO41_11150 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_11150 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_11150 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB JO41_11155 IPR002545 CheW-like domain JO41_11155 IPR036061 CheW-like domain superfamily JO41_11155 IPR039315 Chemotaxis protein CheW JO41_11165 IPR024045 NusG, domain 2 JO41_11165 IPR038690 NusG, domain 2 superfamily JO41_11175 IPR005532 Sulfatase-modifying factor enzyme JO41_11175 IPR016187 C-type lectin fold JO41_11175 IPR042095 Sulfatase-modifying factor enzyme superfamily JO41_11180 IPR002316 Proline-tRNA ligase, class IIa JO41_11180 IPR004154 Anticodon-binding JO41_11180 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 JO41_11180 IPR033730 Prokaryote proline-tRNA ligase core domain JO41_11180 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily JO41_11180 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain JO41_11180 IPR006195 Aminoacyl-tRNA synthetase, class II JO41_11180 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) JO41_11180 IPR036621 Anticodon-binding domain superfamily JO41_11180 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type JO41_11190 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein JO41_11190 IPR029001 Inosine triphosphate pyrophosphatase-like JO41_11195 IPR001865 Ribosomal protein S2 JO41_11195 IPR018130 Ribosomal protein S2, conserved site JO41_11195 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily JO41_11195 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid JO41_11200 IPR009060 UBA-like superfamily JO41_11200 IPR018101 Translation elongation factor Ts, conserved site JO41_11200 IPR001816 Translation elongation factor EFTs/EF1B JO41_11200 IPR036402 Elongation factor Ts, dimerisation domain superfamily JO41_11200 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation JO41_11205 IPR002661 Ribosome recycling factor JO41_11205 IPR036191 RRF superfamily JO41_11205 IPR023584 Ribosome recycling factor domain JO41_11210 IPR036424 Decaprenyl diphosphate synthase-like superfamily JO41_11210 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site JO41_11210 IPR001441 Decaprenyl diphosphate synthase-like JO41_11215 IPR000374 Phosphatidate cytidylyltransferase JO41_11220 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase JO41_11220 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal JO41_11220 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal JO41_11220 IPR036291 NAD(P)-binding domain superfamily JO41_11220 IPR036169 DXP reductoisomerase, C-terminal domain superfamily JO41_11220 IPR026877 DXP reductoisomerase C-terminal domain JO41_11225 IPR001478 PDZ domain JO41_11225 IPR036034 PDZ superfamily JO41_11225 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase JO41_11225 IPR008915 Peptidase M50 JO41_11225 IPR041489 PDZ domain 6 JO41_11230 IPR025682 CpXC domain JO41_11235 IPR015943 WD40/YVTN repeat-like-containing domain superfamily JO41_11235 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily JO41_11240 IPR023769 Nucleoid occlusion factor SlmA JO41_11240 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_11240 IPR009057 Homeobox-like domain superfamily JO41_11240 IPR001647 DNA-binding HTH domain, TetR-type JO41_11250 IPR033399 Putative outer membrane lipoprotein-sorting protein JO41_11270 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11270 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain JO41_11270 IPR000727 Target SNARE coiled-coil homology domain JO41_11270 IPR004090 Chemotaxis methyl-accepting receptor JO41_11270 IPR003660 HAMP domain JO41_11275 IPR029061 Thiamin diphosphate-binding fold JO41_11275 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II JO41_11275 IPR005475 Transketolase-like, pyrimidine-binding domain JO41_11275 IPR005474 Transketolase, N-terminal JO41_11275 IPR033247 Transketolase family JO41_11275 IPR020826 Transketolase binding site JO41_11275 IPR005478 Transketolase, bacterial-like JO41_11280 IPR041628 ChlI/MoxR, AAA lid domain JO41_11280 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11280 IPR011703 ATPase, AAA-3 JO41_11295 IPR004811 RelA/SpoT family JO41_11295 IPR012676 TGS-like JO41_11295 IPR004095 TGS JO41_11295 IPR007685 RelA/SpoT JO41_11295 IPR003607 HD/PDEase domain JO41_11295 IPR012675 Beta-grasp domain superfamily JO41_11295 IPR033655 RelA, TGS domain JO41_11295 IPR002912 ACT domain JO41_11300 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific JO41_11300 IPR007848 Methyltransferase small domain JO41_11300 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_11300 IPR040758 Release factor glutamine methyltransferase, N-terminal domain JO41_11300 IPR004556 Methyltransferase HemK-like JO41_11300 IPR002052 DNA methylase, N-6 adenine-specific, conserved site JO41_11305 IPR004373 Peptide chain release factor 1 JO41_11305 IPR000352 Peptide chain release factor class I JO41_11305 IPR005139 Peptide chain release factor JO41_11310 IPR002110 Ankyrin repeat JO41_11310 IPR036770 Ankyrin repeat-containing domain superfamily JO41_11310 IPR020683 Ankyrin repeat-containing domain JO41_11315 IPR004771 K+/H+ exchanger JO41_11315 IPR006153 Cation/H+ exchanger JO41_11315 IPR038770 Sodium/solute symporter superfamily JO41_11320 IPR032585 Protein of unknown function DUF4912 JO41_11325 IPR004300 Glycoside hydrolase family 57, N-terminal domain JO41_11325 IPR028995 Glycoside hydrolase families 57/38, central domain superfamily JO41_11325 IPR037090 Glycoside hydrolase families 57, central domain JO41_11325 IPR027291 Glycoside hydrolase 38, N-terminal domain superfamily JO41_11325 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel JO41_11325 IPR015293 Domain of unknown function DUF1957 JO41_11325 IPR040042 1,4-alpha-glucan branching enzyme MT3115-like JO41_11330 IPR029033 Histidine phosphatase superfamily JO41_11330 IPR005952 Phosphoglycerate mutase 1 JO41_11330 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site JO41_11330 IPR013078 Histidine phosphatase superfamily, clade-1 JO41_11335 IPR041102 UvrA, interaction domain JO41_11335 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11335 IPR004602 UvrABC system subunit A JO41_11335 IPR017871 ABC transporter, conserved site JO41_11335 IPR003439 ABC transporter-like JO41_11335 IPR041552 UvrA DNA-binding domain JO41_11345 IPR003439 ABC transporter-like JO41_11345 IPR017871 ABC transporter, conserved site JO41_11345 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11345 IPR003593 AAA+ ATPase domain JO41_11350 IPR005322 Peptidase C69, dipeptidase A JO41_11355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_11355 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain JO41_11355 IPR036291 NAD(P)-binding domain superfamily JO41_11365 IPR033479 Double Cache domain 1 JO41_11365 IPR029151 Periplasmic sensor-like domain superfamily JO41_11365 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11365 IPR003660 HAMP domain JO41_11375 IPR005130 Serine dehydratase-like, alpha subunit JO41_11375 IPR004642 Serine dehydratase, alpha subunit JO41_11380 IPR029009 Allosteric substrate binding domain superfamily JO41_11380 IPR005131 Serine dehydratase beta chain JO41_11380 IPR002912 ACT domain JO41_11380 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit JO41_11385 IPR013785 Aldolase-type TIM barrel JO41_11385 IPR035990 Triosephosphate isomerase superfamily JO41_11385 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic JO41_11385 IPR000652 Triosephosphate isomerase JO41_11385 IPR020861 Triosephosphate isomerase, active site JO41_11400 IPR003593 AAA+ ATPase domain JO41_11400 IPR026253 Methionine import ATP-binding protein MetN JO41_11400 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal JO41_11400 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11400 IPR018449 NIL domain JO41_11400 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain JO41_11400 IPR003439 ABC transporter-like JO41_11400 IPR017871 ABC transporter, conserved site JO41_11405 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_11405 IPR035906 MetI-like superfamily JO41_11415 IPR017439 Amidohydrolase JO41_11415 IPR036264 Bacterial exopeptidase dimerisation domain JO41_11415 IPR002933 Peptidase M20 JO41_11415 IPR011650 Peptidase M20, dimerisation domain JO41_11450 IPR011004 Trimeric LpxA-like superfamily JO41_11450 IPR032533 Protein of unknown function DUF4954 JO41_11465 IPR017871 ABC transporter, conserved site JO41_11465 IPR025857 MacB-like periplasmic core domain JO41_11465 IPR017911 ABC transporter, macrolide export, ATP-binding domain JO41_11465 IPR003439 ABC transporter-like JO41_11465 IPR003838 ABC transporter permease protein domain JO41_11465 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11465 IPR003593 AAA+ ATPase domain JO41_11470 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11470 IPR017871 ABC transporter, conserved site JO41_11470 IPR003593 AAA+ ATPase domain JO41_11470 IPR003439 ABC transporter-like JO41_11480 IPR028263 Flagellar motor switch protein FliG, N-terminal domain JO41_11480 IPR032779 Flagellar motor switch protein FliG, middle domain JO41_11480 IPR011002 Flagellar motor switch protein FliG, alpha-helical JO41_11480 IPR000090 Flagellar motor switch protein FliG JO41_11480 IPR023087 Flagellar motor switch protein FliG, C-terminal JO41_11485 IPR013578 Peptidase M16C associated JO41_11485 IPR007863 Peptidase M16, C-terminal JO41_11485 IPR011765 Peptidase M16, N-terminal JO41_11485 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like JO41_11490 IPR003594 Histidine kinase/HSP90-like ATPase JO41_11490 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_11490 IPR002288 DNA gyrase B subunit, C-terminal JO41_11490 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_11490 IPR001241 DNA topoisomerase, type IIA JO41_11490 IPR013760 DNA topoisomerase, type IIA-like domain superfamily JO41_11490 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal JO41_11490 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 JO41_11490 IPR018522 DNA topoisomerase, type IIA, conserved site JO41_11490 IPR006171 TOPRIM domain JO41_11490 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_11495 IPR011650 Peptidase M20, dimerisation domain JO41_11495 IPR002933 Peptidase M20 JO41_11495 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria JO41_11495 IPR036264 Bacterial exopeptidase dimerisation domain JO41_11495 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site JO41_11500 IPR013785 Aldolase-type TIM barrel JO41_11500 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase JO41_11500 IPR007197 Radical SAM JO41_11505 IPR001599 Alpha-2-macroglobulin JO41_11505 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain JO41_11505 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain JO41_11505 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain JO41_11505 IPR021868 Alpha-2-macroglobulin MG3 domain JO41_11505 IPR011625 Alpha-2-macroglobulin, bait region domain JO41_11505 IPR002890 Macroglobulin domain JO41_11505 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid JO41_11530 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily JO41_11530 IPR003732 D-aminoacyl-tRNA deacylase DTD JO41_11535 IPR018171 Peptidyl-tRNA hydrolase, conserved site JO41_11535 IPR001328 Peptidyl-tRNA hydrolase JO41_11535 IPR036416 Peptidyl-tRNA hydrolase superfamily JO41_11540 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11540 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface JO41_11540 IPR023400 DNA recombination and repair protein RecA, C-terminal JO41_11540 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain JO41_11540 IPR020584 DNA recombination/repair protein RecA, conserved site JO41_11540 IPR013765 DNA recombination and repair protein RecA JO41_11540 IPR003593 AAA+ ATPase domain JO41_11550 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11550 IPR011924 Lipoprotein releasing system, ATP-binding protein JO41_11550 IPR015854 ABC transporter, lipoprotein release, LolD JO41_11550 IPR017871 ABC transporter, conserved site JO41_11550 IPR003439 ABC transporter-like JO41_11550 IPR003593 AAA+ ATPase domain JO41_11570 IPR000905 Gcp-like domain JO41_11570 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD JO41_11570 IPR017861 Kae1/TsaD family JO41_11610 IPR032501 Proteasomal ATPase OB C-terminal domain JO41_11610 IPR003959 ATPase, AAA-type, core JO41_11610 IPR003960 ATPase, AAA-type, conserved site JO41_11610 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11610 IPR041626 Proteasomal ATPase, N-terminal OB domain JO41_11610 IPR022482 Proteasome ATPase JO41_11610 IPR003593 AAA+ ATPase domain JO41_11625 IPR039421 Type I protein exporter JO41_11625 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11625 IPR017871 ABC transporter, conserved site JO41_11625 IPR003439 ABC transporter-like JO41_11625 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_11625 IPR011527 ABC transporter type 1, transmembrane domain JO41_11625 IPR003593 AAA+ ATPase domain JO41_11645 IPR003593 AAA+ ATPase domain JO41_11645 IPR003439 ABC transporter-like JO41_11645 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11645 IPR017871 ABC transporter, conserved site JO41_11650 IPR001991 Sodium:dicarboxylate symporter JO41_11650 IPR036458 Sodium:dicarboxylate symporter superfamily JO41_11650 IPR023025 Serine/threonine transporter SstT JO41_11655 IPR021144 Uncharacterised protein family UPF0597 JO41_11655 IPR005130 Serine dehydratase-like, alpha subunit JO41_11660 IPR006680 Amidohydrolase-related JO41_11660 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_11660 IPR032466 Metal-dependent hydrolase JO41_11660 IPR011778 Hydantoinase/dihydropyrimidinase JO41_11660 IPR023766 D-phenylhydantoinase JO41_11675 IPR000522 ABC transporter, permease protein, BtuC-like JO41_11675 IPR037294 ABC transporter, BtuC-like JO41_11690 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11690 IPR003439 ABC transporter-like JO41_11690 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC JO41_11690 IPR003593 AAA+ ATPase domain JO41_11690 IPR011527 ABC transporter type 1, transmembrane domain JO41_11690 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_11700 IPR007156 LemA JO41_11700 IPR023353 LemA-like domain superfamily JO41_11705 IPR013572 Transcription regulator MAATS, C-terminal JO41_11705 IPR001647 DNA-binding HTH domain, TetR-type JO41_11705 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily JO41_11705 IPR023772 DNA-binding HTH domain, TetR-type, conserved site JO41_11705 IPR009057 Homeobox-like domain superfamily JO41_11715 IPR039421 Type I protein exporter JO41_11715 IPR011917 ABC transporter, lipid A export, MsbA JO41_11715 IPR017871 ABC transporter, conserved site JO41_11715 IPR003439 ABC transporter-like JO41_11715 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_11715 IPR011527 ABC transporter type 1, transmembrane domain JO41_11715 IPR003593 AAA+ ATPase domain JO41_11715 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11720 IPR011527 ABC transporter type 1, transmembrane domain JO41_11720 IPR003593 AAA+ ATPase domain JO41_11720 IPR036640 ABC transporter type 1, transmembrane domain superfamily JO41_11720 IPR003439 ABC transporter-like JO41_11720 IPR017871 ABC transporter, conserved site JO41_11720 IPR011917 ABC transporter, lipid A export, MsbA JO41_11720 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11725 IPR011711 GntR, C-terminal JO41_11725 IPR000524 Transcription regulator HTH, GntR JO41_11725 IPR000485 AsnC-type HTH domain JO41_11725 IPR036390 Winged helix DNA-binding domain superfamily JO41_11725 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_11725 IPR008920 Transcription regulator FadR/GntR, C-terminal JO41_11730 IPR000085 Bacterial DNA recombination protein RuvA JO41_11730 IPR010994 RuvA domain 2-like JO41_11730 IPR012340 Nucleic acid-binding, OB-fold JO41_11730 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 JO41_11730 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial JO41_11735 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site JO41_11735 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_11735 IPR036956 Impact, N-terminal domain superfamily JO41_11735 IPR015796 Impact family, bacterial/archaeal JO41_11735 IPR001498 Impact, N-terminal JO41_11735 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal JO41_11735 IPR023582 Impact family JO41_11735 IPR035647 EF-G domain III/V-like JO41_11740 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JO41_11740 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JO41_11740 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site JO41_11740 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase JO41_11740 IPR036291 NAD(P)-binding domain superfamily JO41_11745 IPR004276 Glycosyltransferase family 28, N-terminal domain JO41_11745 IPR007235 Glycosyl transferase, family 28, C-terminal JO41_11745 IPR006009 N-acetylglucosaminyltransferase, MurG JO41_11755 IPR015199 DNA polymerase III, delta subunit, C-terminal JO41_11755 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal JO41_11755 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11770 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily JO41_11770 IPR007692 DNA helicase, DnaB type JO41_11770 IPR007694 DNA helicase, DnaB-like, C-terminal JO41_11770 IPR007693 DNA helicase, DnaB-like, N-terminal JO41_11770 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal JO41_11770 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11775 IPR036935 Ribosomal protein L9, N-terminal domain superfamily JO41_11775 IPR036791 Ribosomal protein L9, C-terminal domain superfamily JO41_11775 IPR020070 Ribosomal protein L9, N-terminal JO41_11775 IPR009027 Ribosomal protein L9/RNase H1, N-terminal JO41_11775 IPR020594 Ribosomal protein L9, bacteria/chloroplast JO41_11775 IPR020069 Ribosomal protein L9, C-terminal JO41_11775 IPR000244 Ribosomal protein L9 JO41_11780 IPR036870 Ribosomal protein S18 superfamily JO41_11780 IPR001648 Ribosomal protein S18 JO41_11780 IPR018275 Ribosomal protein S18, conserved site JO41_11785 IPR000424 Primosome PriB/single-strand DNA-binding JO41_11785 IPR011344 Single-stranded DNA-binding protein JO41_11785 IPR012340 Nucleic acid-binding, OB-fold JO41_11790 IPR035980 Ribosomal protein S6 superfamily JO41_11790 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 JO41_11790 IPR020815 Ribosomal protein S6, conserved site JO41_11790 IPR000529 Ribosomal protein S6 JO41_11790 IPR020814 Ribosomal protein S6, plastid/chloroplast JO41_11795 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11795 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal JO41_11795 IPR003495 CobW/HypB/UreG, nucleotide-binding domain JO41_11800 IPR002528 Multi antimicrobial extrusion protein JO41_11810 IPR003660 HAMP domain JO41_11810 IPR029787 Nucleotide cyclase JO41_11810 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase JO41_11815 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase JO41_11820 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_11820 IPR016454 Cysteine desulfurase JO41_11820 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site JO41_11820 IPR000192 Aminotransferase class V domain JO41_11820 IPR015424 Pyridoxal phosphate-dependent transferase JO41_11820 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_11825 IPR016037 3-dehydroquinate synthase AroB JO41_11825 IPR030960 3-dehydroquinate synthase domain JO41_11825 IPR030963 3-dehydroquinate synthase family JO41_11835 IPR003960 ATPase, AAA-type, conserved site JO41_11835 IPR003959 ATPase, AAA-type, core JO41_11835 IPR041569 AAA ATPase, AAA+ lid domain JO41_11835 IPR003593 AAA+ ATPase domain JO41_11835 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11835 IPR005936 Peptidase, FtsH JO41_11835 IPR000642 Peptidase M41 JO41_11835 IPR037219 Peptidase M41-like JO41_11845 IPR014237 Anti-sigma F factor antagonist JO41_11845 IPR003658 Anti-sigma factor antagonist JO41_11845 IPR002645 STAS domain JO41_11845 IPR036513 STAS domain superfamily JO41_11875 IPR027469 Cation efflux transmembrane domain superfamily JO41_11875 IPR002524 Cation efflux protein JO41_11875 IPR027470 Cation efflux protein, cytoplasmic domain JO41_11875 IPR023783 Cation efflux pump FieF JO41_11875 IPR036837 Cation efflux protein, cytoplasmic domain superfamily JO41_11880 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_11880 IPR015424 Pyridoxal phosphate-dependent transferase JO41_11880 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase JO41_11880 IPR023603 Threonine aldolase JO41_11880 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_11885 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily JO41_11885 IPR036390 Winged helix DNA-binding domain superfamily JO41_11885 IPR001367 Iron dependent repressor, metal binding and dimerisation domain JO41_11885 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_11885 IPR022689 Iron dependent repressor JO41_11885 IPR022687 DTXR-type HTH domain JO41_11890 IPR006129 Adhesin B JO41_11890 IPR006127 Periplasmic solute binding protein, ZnuA-like JO41_11890 IPR006128 Adhesion lipoprotein JO41_11895 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11895 IPR003593 AAA+ ATPase domain JO41_11895 IPR017871 ABC transporter, conserved site JO41_11895 IPR003439 ABC transporter-like JO41_11905 IPR001626 ABC transporter, TroCD-like JO41_11905 IPR037294 ABC transporter, BtuC-like JO41_11915 IPR001626 ABC transporter, TroCD-like JO41_11915 IPR037294 ABC transporter, BtuC-like JO41_11920 IPR007553 Domain of unknown function DUF523 JO41_11930 IPR028299 ClpA/B, conserved site 2 JO41_11930 IPR041546 ClpA/ClpB, AAA lid domain JO41_11930 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11930 IPR001943 UVR domain JO41_11930 IPR001270 ClpA/B family JO41_11930 IPR004176 Clp, N-terminal JO41_11930 IPR036628 Clp, N-terminal domain superfamily JO41_11930 IPR019489 Clp ATPase, C-terminal JO41_11930 IPR018368 ClpA/B, conserved site 1 JO41_11930 IPR003959 ATPase, AAA-type, core JO41_11930 IPR003593 AAA+ ATPase domain JO41_11935 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain JO41_11935 IPR022414 ATP:guanido phosphotransferase, catalytic domain JO41_11935 IPR022415 ATP:guanido phosphotransferase active site JO41_11935 IPR000749 ATP:guanido phosphotransferase JO41_11935 IPR023660 Protein arginine kinase JO41_11945 IPR035965 PAS domain superfamily JO41_11945 IPR003593 AAA+ ATPase domain JO41_11945 IPR013767 PAS fold JO41_11945 IPR002078 RNA polymerase sigma factor 54 interaction domain JO41_11945 IPR009057 Homeobox-like domain superfamily JO41_11945 IPR002197 DNA binding HTH domain, Fis-type JO41_11945 IPR036291 NAD(P)-binding domain superfamily JO41_11945 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11945 IPR000014 PAS domain JO41_11945 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO41_11945 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO41_11945 IPR025944 Sigma-54 interaction domain, conserved site JO41_11955 IPR036890 Histidine kinase/HSP90-like ATPase superfamily JO41_11955 IPR000700 PAS-associated, C-terminal JO41_11955 IPR035965 PAS domain superfamily JO41_11955 IPR004358 Signal transduction histidine kinase-related protein, C-terminal JO41_11955 IPR000014 PAS domain JO41_11955 IPR003660 HAMP domain JO41_11955 IPR003594 Histidine kinase/HSP90-like ATPase JO41_11955 IPR013767 PAS fold JO41_11955 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily JO41_11955 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain JO41_11955 IPR005467 Histidine kinase domain JO41_11960 IPR003593 AAA+ ATPase domain JO41_11960 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 JO41_11960 IPR025944 Sigma-54 interaction domain, conserved site JO41_11960 IPR011006 CheY-like superfamily JO41_11960 IPR009057 Homeobox-like domain superfamily JO41_11960 IPR002197 DNA binding HTH domain, Fis-type JO41_11960 IPR002078 RNA polymerase sigma factor 54 interaction domain JO41_11960 IPR001789 Signal transduction response regulator, receiver domain JO41_11960 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_11960 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 JO41_12000 IPR037171 NagB/RpiA transferase-like JO41_12000 IPR003702 Acetyl-CoA hydrolase/transferase JO41_12000 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain JO41_12000 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily JO41_12005 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ JO41_12005 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ JO41_12005 IPR029069 HotDog domain superfamily JO41_12010 IPR034904 Fe-S cluster assembly domain superfamily JO41_12010 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal JO41_12025 IPR024719 HpaB/PvcC/4-BUDH C-terminal JO41_12025 IPR004925 HpaB/PvcC/4-BUDH JO41_12025 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily JO41_12025 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal JO41_12025 IPR024674 HpaB/PvcC/4-BUDH N-terminal JO41_12040 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA JO41_12040 IPR039697 Iron-type alcohol dehydrogenase-like JO41_12040 IPR018211 Alcohol dehydrogenase, iron-type, conserved site JO41_12055 IPR005135 Endonuclease/exonuclease/phosphatase JO41_12055 IPR004808 AP endonuclease 1 JO41_12055 IPR020848 AP endonuclease 1, conserved site JO41_12055 IPR036691 Endonuclease/exonuclease/phosphatase superfamily JO41_12055 IPR020847 AP endonuclease 1, binding site JO41_12065 IPR007401 Protein of unknown function DUF454 JO41_12070 IPR030921 LPS export ABC transporter, ATP-binding protein LptB JO41_12070 IPR017871 ABC transporter, conserved site JO41_12070 IPR003439 ABC transporter-like JO41_12070 IPR003593 AAA+ ATPase domain JO41_12070 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12080 IPR001757 P-type ATPase JO41_12080 IPR036412 HAD-like superfamily JO41_12080 IPR027256 P-type ATPase, subfamily IB JO41_12080 IPR023214 HAD superfamily JO41_12080 IPR006121 Heavy metal-associated domain, HMA JO41_12080 IPR018303 P-type ATPase, phosphorylation site JO41_12080 IPR023298 P-type ATPase, transmembrane domain superfamily JO41_12080 IPR006122 Heavy metal-associated domain, copper ion-binding JO41_12080 IPR017969 Heavy-metal-associated, conserved site JO41_12080 IPR023299 P-type ATPase, cytoplasmic domain N JO41_12080 IPR008250 P-type ATPase, A domain superfamily JO41_12080 IPR036163 Heavy metal-associated domain superfamily JO41_12100 IPR006680 Amidohydrolase-related JO41_12100 IPR032466 Metal-dependent hydrolase JO41_12100 IPR023512 Deaminase MtaD/DadD JO41_12100 IPR011059 Metal-dependent hydrolase, composite domain superfamily JO41_12115 IPR003593 AAA+ ATPase domain JO41_12115 IPR003439 ABC transporter-like JO41_12115 IPR017871 ABC transporter, conserved site JO41_12115 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12140 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_12140 IPR003682 rRNA small subunit methyltransferase G JO41_12145 IPR030855 Bifunctional ligase/repressor BirA JO41_12145 IPR004408 Biotin--acetyl-CoA-carboxylase ligase JO41_12145 IPR004409 Biotin operon repressor, helix-turn-helix domain JO41_12145 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain JO41_12145 IPR013196 Helix-turn-helix, type 11 JO41_12145 IPR008988 Transcriptional repressor, C-terminal JO41_12145 IPR036390 Winged helix DNA-binding domain superfamily JO41_12145 IPR003142 Biotin protein ligase, C-terminal JO41_12145 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_12150 IPR036397 Ribonuclease H superfamily JO41_12150 IPR012337 Ribonuclease H-like superfamily JO41_12150 IPR013520 Exonuclease, RNase T/DNA polymerase III JO41_12150 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain JO41_12155 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily JO41_12155 IPR005841 Alpha-D-phosphohexomutase superfamily JO41_12155 IPR005843 Alpha-D-phosphohexomutase, C-terminal JO41_12155 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III JO41_12155 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I JO41_12155 IPR016066 Alpha-D-phosphohexomutase, conserved site JO41_12155 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II JO41_12155 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III JO41_12165 IPR001460 Penicillin-binding protein, transpeptidase JO41_12165 IPR036950 Penicillin binding protein transglycosylase domain JO41_12165 IPR012338 Beta-lactamase/transpeptidase-like JO41_12165 IPR001264 Glycosyl transferase, family 51 JO41_12165 IPR031376 Penicillin-binding protein, OB-like domain JO41_12165 IPR023346 Lysozyme-like domain superfamily JO41_12185 IPR013026 Tetratricopeptide repeat-containing domain JO41_12185 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_12185 IPR019734 Tetratricopeptide repeat JO41_12195 IPR037272 Sodium:neurotransmitter symporter superfamily JO41_12195 IPR000175 Sodium:neurotransmitter symporter JO41_12200 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_12200 IPR014105 Carotenoid/retinoid oxidoreductase JO41_12200 IPR002937 Amine oxidase JO41_12205 IPR008949 Isoprenoid synthase domain superfamily JO41_12205 IPR019845 Squalene/phytoene synthase, conserved site JO41_12205 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head JO41_12210 IPR039606 Phytol/farnesol kinase JO41_12215 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12215 IPR011890 Structural maintenance of chromosomes protein, prokaryotic JO41_12215 IPR036277 SMCs flexible hinge superfamily JO41_12215 IPR003395 RecF/RecN/SMC, N-terminal JO41_12215 IPR024704 Structural maintenance of chromosomes protein JO41_12215 IPR010935 SMCs flexible hinge JO41_12225 IPR039565 Outer membrane lipoprotein BamD-like JO41_12225 IPR011990 Tetratricopeptide-like helical domain superfamily JO41_12230 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain JO41_12230 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily JO41_12240 IPR025158 Mg chelatase-related protein, C-terminal domain JO41_12240 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_12240 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_12240 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12240 IPR003593 AAA+ ATPase domain JO41_12240 IPR004482 Mg chelatase-related protein JO41_12240 IPR000523 Magnesium chelatase ChlI domain JO41_12245 IPR023346 Lysozyme-like domain superfamily JO41_12245 IPR001460 Penicillin-binding protein, transpeptidase JO41_12245 IPR036950 Penicillin binding protein transglycosylase domain JO41_12245 IPR012338 Beta-lactamase/transpeptidase-like JO41_12245 IPR001264 Glycosyl transferase, family 51 JO41_12245 IPR011815 Penicillin-binding protein 1C JO41_12245 IPR009647 Penicillin-binding, C-terminal JO41_12250 IPR041682 AAA domain, group 14 JO41_12250 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12250 IPR025420 Domain of unknown function DUF4143 JO41_12485 IPR033479 Double Cache domain 1 JO41_12485 IPR003660 HAMP domain JO41_12485 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_12485 IPR029151 Periplasmic sensor-like domain superfamily JO41_12490 IPR009022 Elongation factor G, domain III JO41_12490 IPR004540 Translation elongation factor EFG/EF2 JO41_12490 IPR009000 Translation protein, beta-barrel domain superfamily JO41_12490 IPR005517 Translation elongation factor EFG/EF2, domain IV JO41_12490 IPR005225 Small GTP-binding protein domain JO41_12490 IPR041095 Elongation Factor G, domain II JO41_12490 IPR035649 EFG, domain V JO41_12490 IPR000640 Elongation factor EFG, domain V-like JO41_12490 IPR000795 Transcription factor, GTP-binding domain JO41_12490 IPR004161 Translation elongation factor EFTu-like, domain 2 JO41_12490 IPR031157 Tr-type G domain, conserved site JO41_12490 IPR035647 EF-G domain III/V-like JO41_12490 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12490 IPR020568 Ribosomal protein S5 domain 2-type fold JO41_12490 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup JO41_12495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase JO41_12495 IPR015507 Ribosomal RNA large subunit methyltransferase E JO41_12495 IPR002877 Ribosomal RNA methyltransferase FtsJ domain JO41_12510 IPR003439 ABC transporter-like JO41_12510 IPR017871 ABC transporter, conserved site JO41_12510 IPR015854 ABC transporter, lipoprotein release, LolD JO41_12510 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12510 IPR003593 AAA+ ATPase domain JO41_12515 IPR003838 ABC transporter permease protein domain JO41_12515 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E JO41_12515 IPR025857 MacB-like periplasmic core domain JO41_12525 IPR036225 SRP/SRP receptor, N-terminal JO41_12525 IPR004390 Signal-recognition particle receptor FtsY JO41_12525 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain JO41_12525 IPR013822 Signal recognition particle SRP54, helical bundle JO41_12525 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12525 IPR003593 AAA+ ATPase domain JO41_12525 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily JO41_12535 IPR005139 Peptide chain release factor JO41_12535 IPR000352 Peptide chain release factor class I JO41_12535 IPR004374 Peptide chain release factor 2 JO41_12550 IPR005876 Cobalt transport protein ATP-binding subunit JO41_12550 IPR015856 ABC transporter, CbiO/EcfA subunit JO41_12550 IPR017871 ABC transporter, conserved site JO41_12550 IPR003439 ABC transporter-like JO41_12550 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12550 IPR003593 AAA+ ATPase domain JO41_12555 IPR003784 BioY protein JO41_12565 IPR023536 Coenzyme A disulphide reductase, staphyolococci JO41_12565 IPR036188 FAD/NAD(P)-binding domain superfamily JO41_12565 IPR023753 FAD/NAD(P)-binding domain JO41_12565 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily JO41_12565 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO41_12565 IPR017758 Coenzyme A disulphide reductase JO41_12570 IPR003709 Peptidase M15B JO41_12570 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily JO41_12595 IPR023765 Solute-binding protein family 5, conserved site JO41_12595 IPR000914 Solute-binding protein family 5 domain JO41_12595 IPR030678 Peptide/nickel binding protein, MppA-type JO41_12595 IPR039424 Solute-binding protein family 5 JO41_12600 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_12600 IPR035906 MetI-like superfamily JO41_12605 IPR035906 MetI-like superfamily JO41_12605 IPR000515 ABC transporter type 1, transmembrane domain MetI-like JO41_12610 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO41_12610 IPR017871 ABC transporter, conserved site JO41_12610 IPR003439 ABC transporter-like JO41_12610 IPR003593 AAA+ ATPase domain JO41_12610 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12615 IPR003593 AAA+ ATPase domain JO41_12615 IPR003439 ABC transporter-like JO41_12615 IPR027417 P-loop containing nucleoside triphosphate hydrolase JO41_12615 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal JO41_12615 IPR017871 ABC transporter, conserved site JO41_12620 IPR036412 HAD-like superfamily JO41_12620 IPR000150 Cof family JO41_12620 IPR006379 HAD-superfamily hydrolase, subfamily IIB JO41_12620 IPR023214 HAD superfamily JO41_12625 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 JO41_12625 IPR004839 Aminotransferase, class I/classII JO41_12625 IPR015421 Pyridoxal phosphate-dependent transferase, major domain JO41_12625 IPR015424 Pyridoxal phosphate-dependent transferase JO41_12625 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site JO41_12630 IPR019888 Transcription regulator AsnC-type JO41_12630 IPR011008 Dimeric alpha-beta barrel JO41_12630 IPR000485 AsnC-type HTH domain JO41_12630 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain JO41_12630 IPR036390 Winged helix DNA-binding domain superfamily JO41_12630 IPR036388 Winged helix-like DNA-binding domain superfamily JO41_12640 IPR001406 Pseudouridine synthase I, TruA JO41_12640 IPR020095 Pseudouridine synthase I, TruA, C-terminal JO41_12640 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain JO41_12640 IPR020103 Pseudouridine synthase, catalytic domain superfamily JO41_12645 IPR018708 Protein of unknown function DUF2225 JO41_12650 IPR037143 4'-phosphopantetheinyl transferase domain superfamily JO41_12650 IPR008278 4'-phosphopantetheinyl transferase domain JO41_12650 IPR004568 Phosphopantetheine-protein transferase domain JO41_12650 IPR002582 Holo-[acyl carrier protein] synthase JO41_12660 IPR014046 Diadenylate cyclase JO41_12660 IPR003390 DNA integrity scanning protein, DisA, N-terminal JO41_12660 IPR034701 Diadenylate cyclase CdaA JO41_12660 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily JO41_12665 IPR011005 Dihydropteroate synthase-like JO41_12665 IPR006390 Dihydropteroate synthase JO41_12665 IPR000489 Pterin-binding domain