locus-tag class description JO41_00055 PF03819 MazG nucleotide pyrophosphohydrolase domain JO41_00055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO41_00080 PF00155 Aminotransferase class I and II JO41_00105 PF00753 Metallo-beta-lactamase superfamily JO41_00105 PF12706 Beta-lactamase superfamily domain JO41_00115 PF04773 FecR protein JO41_00120 PF00072 Response regulator receiver domain JO41_00120 PF00211 Adenylate and Guanylate cyclase catalytic domain JO41_00125 PF02934 GatB/GatE catalytic domain JO41_00125 PF02637 GatB domain JO41_00130 PF01425 Amidase JO41_00140 PF02743 Cache domain JO41_00140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_00140 PF00672 HAMP domain JO41_00165 PF03477 ATP cone domain JO41_00165 PF02867 Ribonucleotide reductase, barrel domain JO41_00165 PF00317 Ribonucleotide reductase, all-alpha domain JO41_00170 PF01192 RNA polymerase Rpb6 JO41_00195 PF00886 Ribosomal protein S16 JO41_00205 PF01782 RimM N-terminal domain JO41_00210 PF01746 tRNA (Guanine-1)-methyltransferase JO41_00215 PF01245 Ribosomal protein L19 JO41_00235 PF02021 Uncharacterised protein family UPF0102 JO41_00250 PF13603 Leucyl-tRNA synthetase, Domain 2 JO41_00250 PF00133 tRNA synthetases class I (I, L, M and V) JO41_00250 PF08264 Anticodon-binding domain of tRNA JO41_00250 PF09334 tRNA synthetases class I (M) JO41_00260 PF00301 Rubredoxin JO41_00275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JO41_00285 PF16868 NMT1-like family JO41_00295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_00295 PF00672 HAMP domain JO41_00295 PF02743 Cache domain JO41_00305 PF01702 Queuine tRNA-ribosyltransferase JO41_00315 PF08011 PD-(D/E)XK nuclease superfamily JO41_00315 PF09820 Predicted AAA-ATPase JO41_00320 PF02926 THUMP domain JO41_00320 PF10672 S-adenosylmethionine-dependent methyltransferase JO41_00320 PF01170 Putative RNA methylase family UPF0020 JO41_00325 PF06971 Putative DNA-binding protein N-terminus JO41_00325 PF02629 CoA binding domain JO41_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JO41_00345 PF01238 Phosphomannose isomerase type I JO41_00350 PF18074 Primosomal protein N C-terminal domain JO41_00350 PF17764 3′ DNA-binding domain (3′BD) JO41_00350 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JO41_00350 PF00270 DEAD/DEAH box helicase JO41_00350 PF00271 Helicase conserved C-terminal domain JO41_00355 PF03167 Uracil DNA glycosylase superfamily JO41_00365 PF01869 BadF/BadG/BcrA/BcrD ATPase family JO41_00370 PF13580 SIS domain JO41_00385 PF01547 Bacterial extracellular solute-binding protein JO41_00390 PF00528 Binding-protein-dependent transport system inner membrane component JO41_00395 PF00528 Binding-protein-dependent transport system inner membrane component JO41_00405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO41_00410 PF02652 L-lactate permease JO41_00415 PF00440 Bacterial regulatory proteins, tetR family JO41_00430 PF03806 AbgT putative transporter family JO41_00440 PF01547 Bacterial extracellular solute-binding protein JO41_00475 PF18693 TRAM domain JO41_00475 PF04055 Radical SAM superfamily JO41_00475 PF00919 Uncharacterized protein family UPF0004 JO41_00480 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JO41_00495 PF03129 Anticodon binding domain JO41_00495 PF02824 TGS domain JO41_00495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO41_00495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO41_00500 PF04073 Aminoacyl-tRNA editing domain JO41_00505 PF08323 Starch synthase catalytic domain JO41_00505 PF00534 Glycosyl transferases group 1 JO41_00510 PF08240 Alcohol dehydrogenase GroES-like domain JO41_00510 PF00107 Zinc-binding dehydrogenase JO41_00515 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO41_00515 PF07683 Cobalamin synthesis protein cobW C-terminal domain JO41_00520 PF03006 Haemolysin-III related JO41_00525 PF01197 Ribosomal protein L31 JO41_00530 PF07497 Rho termination factor, RNA-binding domain JO41_00530 PF07498 Rho termination factor, N-terminal domain JO41_00530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO41_00545 PF00795 Carbon-nitrogen hydrolase JO41_00550 PF00216 Bacterial DNA-binding protein JO41_00555 PF01649 Ribosomal protein S20 JO41_00565 PF04620 Flagellar filament outer layer protein Flaa JO41_00575 PF01520 N-acetylmuramoyl-L-alanine amidase JO41_00580 PF00206 Lyase JO41_00580 PF02655 ATP-grasp domain JO41_00600 PF13186 Iron-sulfur cluster-binding domain JO41_00615 PF00072 Response regulator receiver domain JO41_00625 PF01584 CheW-like domain JO41_00630 PF02895 Signal transducing histidine kinase, homodimeric domain JO41_00630 PF01584 CheW-like domain JO41_00630 PF07194 P2 response regulator binding domain JO41_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO41_00630 PF01627 Hpt domain JO41_00635 PF04723 Glycine reductase complex selenoprotein A JO41_00640 PF04723 Glycine reductase complex selenoprotein A JO41_00645 PF00085 Thioredoxin JO41_00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_00655 PF01743 Poly A polymerase head domain JO41_00655 PF12627 Probable RNA and SrmB- binding site of polymerase A JO41_00655 PF12626 Polymerase A arginine-rich C-terminus JO41_00660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JO41_00670 PF16811 TRAP transporter T-component JO41_00680 PF14542 GCN5-related N-acetyl-transferase JO41_00685 PF00691 OmpA family JO41_00690 PF00578 AhpC/TSA family JO41_00690 PF10417 C-terminal domain of 1-Cys peroxiredoxin JO41_00695 PF08239 Bacterial SH3 domain JO41_00695 PF00877 NlpC/P60 family JO41_00695 PF01476 LysM domain JO41_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JO41_00700 PF03466 LysR substrate binding domain JO41_00705 PF02683 Cytochrome C biogenesis protein transmembrane region JO41_00710 PF00578 AhpC/TSA family JO41_00725 PF01835 MG2 domain JO41_00725 PF17962 Bacterial macroglobulin domain 6 JO41_00725 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JO41_00725 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JO41_00725 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JO41_00725 PF00207 Alpha-2-macroglobulin family JO41_00730 PF09820 Predicted AAA-ATPase JO41_00730 PF08011 PD-(D/E)XK nuclease superfamily JO41_00750 PF00872 Transposase, Mutator family JO41_00770 PF00912 Transglycosylase JO41_00770 PF00905 Penicillin binding protein transpeptidase domain JO41_00780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JO41_00780 PF02837 Glycosyl hydrolases family 2, sugar binding domain JO41_00780 PF00703 Glycosyl hydrolases family 2 JO41_00780 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JO41_00795 PF00528 Binding-protein-dependent transport system inner membrane component JO41_00800 PF00528 Binding-protein-dependent transport system inner membrane component JO41_00815 PF13847 Methyltransferase domain JO41_00820 PF12419 SNF2 Helicase protein JO41_00820 PF00271 Helicase conserved C-terminal domain JO41_00820 PF00176 SNF2 family N-terminal domain JO41_00835 PF08544 GHMP kinases C terminal JO41_00835 PF10509 Galactokinase galactose-binding signature JO41_00850 PF08402 TOBE domain JO41_00850 PF00005 ABC transporter JO41_00860 PF00528 Binding-protein-dependent transport system inner membrane component JO41_00865 PF01547 Bacterial extracellular solute-binding protein JO41_00875 PF03702 Anhydro-N-acetylmuramic acid kinase JO41_00885 PF02080 TrkA-C domain JO41_00885 PF02254 TrkA-N domain JO41_00890 PF13091 PLD-like domain JO41_00905 PF08402 TOBE domain JO41_00905 PF00005 ABC transporter JO41_00910 PF02386 Cation transport protein JO41_00915 PF05362 Lon protease (S16) C-terminal proteolytic domain JO41_00915 PF13654 AAA domain JO41_00980 PF03932 CutC family JO41_01005 PF01973 Protein of unknown function DUF115 JO41_01035 PF01266 FAD dependent oxidoreductase JO41_01035 PF04324 BFD-like [2Fe-2S] binding domain JO41_01040 PF04324 BFD-like [2Fe-2S] binding domain JO41_01040 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_01050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JO41_01050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JO41_01075 PF01381 Helix-turn-helix JO41_01080 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB JO41_01090 PF00465 Iron-containing alcohol dehydrogenase JO41_01110 PF01227 GTP cyclohydrolase I JO41_01110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JO41_01115 PF02616 Segregation and condensation protein ScpA JO41_01135 PF01479 S4 domain JO41_01135 PF00849 RNA pseudouridylate synthase JO41_01150 PF02381 MraZ protein, putative antitoxin-like JO41_01155 PF01795 MraW methylase family JO41_01165 PF02875 Mur ligase family, glutamate ligase domain JO41_01165 PF01225 Mur ligase family, catalytic domain JO41_01165 PF08245 Mur ligase middle domain JO41_01170 PF01098 Cell cycle protein JO41_01175 PF03799 Cell division protein FtsQ JO41_01175 PF08478 POTRA domain, FtsQ-type JO41_01180 PF02491 SHS2 domain inserted in FTSA JO41_01185 PF12327 FtsZ family, C-terminal domain JO41_01185 PF00091 Tubulin/FtsZ family, GTPase domain JO41_01190 PF02899 Phage integrase, N-terminal SAM-like domain JO41_01190 PF00589 Phage integrase family JO41_01195 PF00860 Permease family JO41_01210 PF01479 S4 domain JO41_01210 PF00163 Ribosomal protein S4/S9 N-terminal domain JO41_01235 PF01751 Toprim domain JO41_01235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO41_01235 PF00204 DNA gyrase B JO41_01235 PF00986 DNA gyrase B subunit, carboxyl terminus JO41_01240 PF00521 DNA gyrase/topoisomerase IV, subunit A JO41_01240 PF03989 DNA gyrase C-terminal domain, beta-propeller JO41_01245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JO41_01245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JO41_01275 PF08264 Anticodon-binding domain of tRNA JO41_01275 PF00133 tRNA synthetases class I (I, L, M and V) JO41_01310 PF03051 Peptidase C1-like family JO41_01320 PF00227 Proteasome subunit JO41_01325 PF00004 ATPase family associated with various cellular activities (AAA) JO41_01325 PF07724 AAA domain (Cdc48 subfamily) JO41_01330 PF00460 Flagella basal body rod protein JO41_01335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO41_01335 PF00460 Flagella basal body rod protein JO41_01340 PF02049 Flagellar hook-basal body complex protein FliE JO41_01345 PF01514 Secretory protein of YscJ/FliF family JO41_01345 PF08345 Flagellar M-ring protein C-terminal JO41_01350 PF01706 FliG C-terminal domain JO41_01350 PF14842 FliG N-terminal domain JO41_01350 PF14841 FliG middle domain JO41_01355 PF02108 Flagellar assembly protein FliH JO41_01360 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO41_01360 PF18269 T3SS EscN ATPase C-terminal domain JO41_01360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO41_01385 PF01430 Hsp33 protein JO41_01390 PF00672 HAMP domain JO41_01390 PF02743 Cache domain JO41_01390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_01395 PF00035 Double-stranded RNA binding motif JO41_01395 PF14622 Ribonuclease-III-like JO41_01400 PF00550 Phosphopantetheine attachment site JO41_01405 PF01168 Alanine racemase, N-terminal domain JO41_01440 PF12390 Selenocysteine synthase N terminal JO41_01440 PF03841 L-seryl-tRNA selenium transferase JO41_01445 PF09107 Elongation factor SelB, winged helix JO41_01445 PF00009 Elongation factor Tu GTP binding domain JO41_01445 PF03144 Elongation factor Tu domain 2 JO41_01445 PF09105 Elongation factor SelB, winged helix JO41_01445 PF09106 Elongation factor SelB, winged helix JO41_01450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_01450 PF02743 Cache domain JO41_01450 PF00672 HAMP domain JO41_01460 PF05683 Fumarase C-terminus JO41_01460 PF05681 Fumarate hydratase (Fumerase) JO41_01480 PF00753 Metallo-beta-lactamase superfamily JO41_01480 PF16123 Hydroxyacylglutathione hydrolase C-terminus JO41_01490 PF07364 Metallopeptidase family M81 JO41_01490 PF07171 MlrC C-terminus JO41_01495 PF00528 Binding-protein-dependent transport system inner membrane component JO41_01500 PF00528 Binding-protein-dependent transport system inner membrane component JO41_01510 PF02146 Sir2 family JO41_01515 PF00075 RNase H JO41_01520 PF00793 DAHP synthetase I family JO41_01525 PF01594 AI-2E family transporter JO41_01530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JO41_01535 PF01979 Amidohydrolase family JO41_01545 PF02677 Epoxyqueuosine reductase QueH JO41_01550 PF00005 ABC transporter JO41_01550 PF16326 ABC transporter C-terminal domain JO41_01550 PF12848 ABC transporter JO41_01585 PF01026 TatD related DNase JO41_01590 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JO41_01590 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JO41_01595 PF03180 NLPA lipoprotein JO41_01610 PF02424 ApbE family JO41_01620 PF00274 Fructose-bisphosphate aldolase class-I JO41_01675 PF02151 UvrB/uvrC motif JO41_01675 PF08459 UvrC Helix-hairpin-helix N-terminal JO41_01675 PF01541 GIY-YIG catalytic domain JO41_01680 PF01938 TRAM domain JO41_01680 PF00919 Uncharacterized protein family UPF0004 JO41_01680 PF04055 Radical SAM superfamily JO41_01685 PF01925 Sulfite exporter TauE/SafE JO41_01700 PF02568 Thiamine biosynthesis protein (ThiI) JO41_01700 PF02926 THUMP domain JO41_01710 PF03590 Aspartate-ammonia ligase JO41_01740 PF01709 Transcriptional regulator JO41_01750 PF03120 NAD-dependent DNA ligase OB-fold domain JO41_01750 PF01653 NAD-dependent DNA ligase adenylation domain JO41_01750 PF00533 BRCA1 C Terminus (BRCT) domain JO41_01755 PF00497 Bacterial extracellular solute-binding proteins, family 3 JO41_01760 PF00497 Bacterial extracellular solute-binding proteins, family 3 JO41_01775 PF00177 Ribosomal protein S7p/S5e JO41_01780 PF00164 Ribosomal protein S12/S23 JO41_01785 PF05000 RNA polymerase Rpb1, domain 4 JO41_01785 PF04983 RNA polymerase Rpb1, domain 3 JO41_01785 PF00623 RNA polymerase Rpb1, domain 2 JO41_01785 PF04997 RNA polymerase Rpb1, domain 1 JO41_01785 PF04998 RNA polymerase Rpb1, domain 5 JO41_01790 PF10385 RNA polymerase beta subunit external 1 domain JO41_01790 PF04561 RNA polymerase Rpb2, domain 2 JO41_01790 PF04563 RNA polymerase beta subunit JO41_01790 PF00562 RNA polymerase Rpb2, domain 6 JO41_01790 PF04560 RNA polymerase Rpb2, domain 7 JO41_01790 PF04565 RNA polymerase Rpb2, domain 3 JO41_01795 PF00542 Ribosomal protein L7/L12 C-terminal domain JO41_01795 PF16320 Ribosomal protein L7/L12 dimerisation domain JO41_01800 PF00466 Ribosomal protein L10 JO41_01805 PF00687 Ribosomal protein L1p/L10e family JO41_01810 PF03946 Ribosomal protein L11, N-terminal domain JO41_01810 PF00298 Ribosomal protein L11, RNA binding domain JO41_01815 PF02357 Transcription termination factor nusG JO41_01815 PF00467 KOW motif JO41_01820 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JO41_01830 PF00471 Ribosomal protein L33 JO41_01845 PF02863 Arginine repressor, C-terminal domain JO41_01845 PF01316 Arginine repressor, DNA binding domain JO41_01850 PF02547 Queuosine biosynthesis protein JO41_01855 PF00849 RNA pseudouridylate synthase JO41_01855 PF01479 S4 domain JO41_01865 PF02272 DHHA1 domain JO41_01865 PF01368 DHH family JO41_01875 PF00830 Ribosomal L28 family JO41_01905 PF00005 ABC transporter JO41_01920 PF04542 Sigma-70 region 2 JO41_01920 PF08281 Sigma-70, region 4 JO41_01940 PF01343 Peptidase family S49 JO41_01945 PF00005 ABC transporter JO41_01945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO41_01955 PF00528 Binding-protein-dependent transport system inner membrane component JO41_01955 PF12911 N-terminal TM domain of oligopeptide transport permease C JO41_01960 PF00528 Binding-protein-dependent transport system inner membrane component JO41_01965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO41_01970 PF07859 alpha/beta hydrolase fold JO41_01985 PF00270 DEAD/DEAH box helicase JO41_01985 PF00271 Helicase conserved C-terminal domain JO41_01985 PF17191 RecG wedge domain JO41_02050 PF01695 IstB-like ATP binding protein JO41_02065 PF00145 C-5 cytosine-specific DNA methylase JO41_02145 PF07669 Eco57I restriction-modification methylase JO41_02145 PF12950 TaqI-like C-terminal specificity domain JO41_02210 PF04335 VirB8 protein JO41_02225 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JO41_02250 PF00437 Type II/IV secretion system protein JO41_02280 PF01131 DNA topoisomerase JO41_02280 PF01751 Toprim domain JO41_02305 PF04225 Opacity-associated protein A LysM-like domain JO41_02305 PF01551 Peptidase family M23 JO41_02315 PF13187 4Fe-4S dicluster domain JO41_02320 PF01624 MutS domain I JO41_02320 PF00488 MutS domain V JO41_02320 PF05190 MutS family domain IV JO41_02320 PF05192 MutS domain III JO41_02320 PF05188 MutS domain II JO41_02330 PF01103 Surface antigen JO41_02330 PF07244 Surface antigen variable number repeat JO41_02350 PF02223 Thymidylate kinase JO41_02360 PF04225 Opacity-associated protein A LysM-like domain JO41_02360 PF01551 Peptidase family M23 JO41_02375 PF04468 PSP1 C-terminal conserved region JO41_02390 PF08501 Shikimate dehydrogenase substrate binding domain JO41_02390 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JO41_02395 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JO41_02400 PF01048 Phosphorylase superfamily JO41_02425 PF02325 YGGT family JO41_02435 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JO41_02435 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JO41_02440 PF00378 Enoyl-CoA hydratase/isomerase JO41_02445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JO41_02445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JO41_02450 PF08359 YsiA-like protein, C-terminal region JO41_02450 PF00440 Bacterial regulatory proteins, tetR family JO41_02455 PF00391 PEP-utilising enzyme, mobile domain JO41_02455 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO41_02460 PF01554 MatE JO41_02470 PF13276 HTH-like domain JO41_02470 PF00665 Integrase core domain JO41_02470 PF13333 Integrase core domain JO41_02475 PF01527 Transposase JO41_02485 PF00005 ABC transporter JO41_02485 PF08402 TOBE domain JO41_02490 PF00156 Phosphoribosyl transferase domain JO41_02495 PF01979 Amidohydrolase family JO41_02505 PF01180 Dihydroorotate dehydrogenase JO41_02515 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JO41_02515 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JO41_02520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO41_02520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO41_02525 PF05552 Conserved TM helix JO41_02525 PF00924 Mechanosensitive ion channel JO41_02530 PF11756 Nitrous oxide-stimulated promoter JO41_02540 PF04954 Siderophore-interacting protein JO41_02540 PF00005 ABC transporter JO41_02540 PF00664 ABC transporter transmembrane region JO41_02540 PF08021 Siderophore-interacting FAD-binding domain JO41_02555 PF00664 ABC transporter transmembrane region JO41_02555 PF00005 ABC transporter JO41_02560 PF02938 GAD domain JO41_02560 PF00152 tRNA synthetases class II (D, K and N) JO41_02560 PF01336 OB-fold nucleic acid binding domain JO41_02565 PF00152 tRNA synthetases class II (D, K and N) JO41_02620 PF00871 Acetokinase family JO41_02630 PF04055 Radical SAM superfamily JO41_02640 PF02901 Pyruvate formate lyase-like JO41_02640 PF01228 Glycine radical JO41_02650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO41_02650 PF02403 Seryl-tRNA synthetase N-terminal domain JO41_02655 PF03840 Preprotein translocase SecG subunit JO41_02660 PF00563 EAL domain JO41_02660 PF00360 Phytochrome region JO41_02660 PF00990 Diguanylate cyclase, GGDEF domain JO41_02660 PF01590 GAF domain JO41_02665 PF03764 Elongation factor G, domain IV JO41_02665 PF03144 Elongation factor Tu domain 2 JO41_02665 PF14492 Elongation Factor G, domain II JO41_02665 PF00679 Elongation factor G C-terminus JO41_02665 PF00009 Elongation factor Tu GTP binding domain JO41_02670 PF00365 Phosphofructokinase JO41_02680 PF13393 Histidyl-tRNA synthetase JO41_02685 PF00575 S1 RNA binding domain JO41_02690 PF00158 Sigma-54 interaction domain JO41_02690 PF00072 Response regulator receiver domain JO41_02690 PF02954 Bacterial regulatory protein, Fis family JO41_02705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_02705 PF00672 HAMP domain JO41_02705 PF02743 Cache domain JO41_02710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_02710 PF00672 HAMP domain JO41_02735 PF07196 Flagellin hook IN motif JO41_02735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO41_02740 PF00700 Bacterial flagellin C-terminal helical region JO41_02740 PF00669 Bacterial flagellin N-terminal helical region JO41_02745 PF02623 FliW protein JO41_02750 PF02599 Global regulator protein family JO41_02755 PF01966 HD domain JO41_02755 PF00672 HAMP domain JO41_02760 PF00814 Glycoprotease family JO41_02765 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JO41_02770 PF01479 S4 domain JO41_02770 PF00849 RNA pseudouridylate synthase JO41_02795 PF08323 Starch synthase catalytic domain JO41_02795 PF00534 Glycosyl transferases group 1 JO41_02830 PF00206 Lyase JO41_02830 PF10415 Fumarase C C-terminus JO41_02835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JO41_02855 PF01081 KDPG and KHG aldolase JO41_02860 PF00654 Voltage gated chloride channel JO41_02865 PF00860 Permease family JO41_02870 PF00860 Permease family JO41_02895 PF17757 UvrB interaction domain JO41_02895 PF00271 Helicase conserved C-terminal domain JO41_02895 PF04851 Type III restriction enzyme, res subunit JO41_02895 PF02151 UvrB/uvrC motif JO41_02895 PF12344 Ultra-violet resistance protein B JO41_02900 PF00586 AIR synthase related protein, N-terminal domain JO41_02900 PF02769 AIR synthase related protein, C-terminal domain JO41_02925 PF00266 Aminotransferase class-V JO41_02940 PF08011 PD-(D/E)XK nuclease superfamily JO41_02940 PF09820 Predicted AAA-ATPase JO41_02945 PF02608 ABC transporter substrate-binding protein PnrA-like JO41_03005 PF12072 Domain of unknown function (DUF3552) JO41_03005 PF00013 KH domain JO41_03005 PF01966 HD domain JO41_03010 PF00474 Sodium:solute symporter family JO41_03020 PF17762 HTH domain found in ParB protein JO41_03020 PF02195 ParB-like nuclease domain JO41_03025 PF13614 AAA domain JO41_03030 PF02190 ATP-dependent protease La (LON) substrate-binding domain JO41_03030 PF00004 ATPase family associated with various cellular activities (AAA) JO41_03030 PF05362 Lon protease (S16) C-terminal proteolytic domain JO41_03080 PF01370 NAD dependent epimerase/dehydratase family JO41_03090 PF00535 Glycosyl transferase family 2 JO41_03090 PF01501 Glycosyl transferase family 8 JO41_03105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JO41_03105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JO41_03105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JO41_03110 PF02350 UDP-N-acetylglucosamine 2-epimerase JO41_03125 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JO41_03135 PF00132 Bacterial transferase hexapeptide (six repeats) JO41_03140 PF13173 AAA domain JO41_03140 PF13635 Domain of unknown function (DUF4143) JO41_03145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO41_03150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JO41_03150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JO41_03175 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO41_03180 PF00375 Sodium:dicarboxylate symporter family JO41_03185 PF00224 Pyruvate kinase, barrel domain JO41_03185 PF02887 Pyruvate kinase, alpha/beta domain JO41_03185 PF00391 PEP-utilising enzyme, mobile domain JO41_03200 PF00293 NUDIX domain JO41_03200 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JO41_03200 PF09297 NADH pyrophosphatase zinc ribbon domain JO41_03205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO41_03210 PF02504 Fatty acid synthesis protein JO41_03215 PF07238 PilZ domain JO41_03225 PF01820 D-ala D-ala ligase N-terminus JO41_03225 PF07478 D-ala D-ala ligase C-terminus JO41_03230 PF02554 Carbon starvation protein CstA JO41_03240 PF00294 pfkB family carbohydrate kinase JO41_03245 PF00294 pfkB family carbohydrate kinase JO41_03250 PF01156 Inosine-uridine preferring nucleoside hydrolase JO41_03270 PF02608 ABC transporter substrate-binding protein PnrA-like JO41_03280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JO41_03280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JO41_03285 PF07075 Protein of unknown function (DUF1343) JO41_03295 PF01769 Divalent cation transporter JO41_03295 PF00571 CBS domain JO41_03295 PF03448 MgtE intracellular N domain JO41_03310 PF00860 Permease family JO41_03350 PF00209 Sodium:neurotransmitter symporter family JO41_03365 PF01921 tRNA synthetases class I (K) JO41_03375 PF00381 PTS HPr component phosphorylation site JO41_03380 PF02603 HPr Serine kinase N terminus JO41_03380 PF07475 HPr Serine kinase C-terminal domain JO41_03390 PF00128 Alpha amylase, catalytic domain JO41_03390 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JO41_03395 PF00343 Carbohydrate phosphorylase JO41_03400 PF00334 Nucleoside diphosphate kinase JO41_03405 PF00448 SRP54-type protein, GTPase domain JO41_03405 PF02881 SRP54-type protein, helical bundle domain JO41_03405 PF02978 Signal peptide binding domain JO41_03415 PF00156 Phosphoribosyl transferase domain JO41_03420 PF02355 Protein export membrane protein JO41_03425 PF02355 Protein export membrane protein JO41_03430 PF02699 Preprotein translocase subunit JO41_03435 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JO41_03445 PF01424 R3H domain JO41_03445 PF14804 Jag N-terminus JO41_03450 PF14849 YidC periplasmic domain JO41_03450 PF02096 60Kd inner membrane protein JO41_03460 PF00468 Ribosomal protein L34 JO41_03485 PF02511 Thymidylate synthase complementing protein JO41_03490 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO41_03490 PF00933 Glycosyl hydrolase family 3 N terminal domain JO41_03495 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_03500 PF01515 Phosphate acetyl/butaryl transferase JO41_03525 PF03063 Prismane/CO dehydrogenase family JO41_03530 PF00118 TCP-1/cpn60 chaperonin family JO41_03550 PF00669 Bacterial flagellin N-terminal helical region JO41_03550 PF00700 Bacterial flagellin C-terminal helical region JO41_03555 PF00700 Bacterial flagellin C-terminal helical region JO41_03555 PF00669 Bacterial flagellin N-terminal helical region JO41_03560 PF02465 Flagellar hook-associated protein 2 N-terminus JO41_03560 PF07195 Flagellar hook-associated protein 2 C-terminus JO41_03575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JO41_03580 PF00271 Helicase conserved C-terminal domain JO41_03580 PF04408 Helicase associated domain (HA2) JO41_03580 PF00270 DEAD/DEAH box helicase JO41_03580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JO41_03590 PF00579 tRNA synthetases class I (W and Y) JO41_03595 PF09820 Predicted AAA-ATPase JO41_03595 PF08011 PD-(D/E)XK nuclease superfamily JO41_03630 PF01409 tRNA synthetases class II core domain (F) JO41_03635 PF03023 Lipid II flippase MurJ JO41_03655 PF01297 Zinc-uptake complex component A periplasmic JO41_03675 PF17131 Outer membrane lipoprotein-sorting protein JO41_03680 PF00166 Chaperonin 10 Kd subunit JO41_03685 PF03979 Sigma-70 factor, region 1.1 JO41_03685 PF00140 Sigma-70 factor, region 1.2 JO41_03685 PF04542 Sigma-70 region 2 JO41_03685 PF04545 Sigma-70, region 4 JO41_03685 PF04539 Sigma-70 region 3 JO41_03700 PF00300 Histidine phosphatase superfamily (branch 1) JO41_03705 PF01479 S4 domain JO41_03705 PF00849 RNA pseudouridylate synthase JO41_03710 PF01048 Phosphorylase superfamily JO41_03720 PF00580 UvrD/REP helicase N-terminal domain JO41_03720 PF13361 UvrD-like helicase C-terminal domain JO41_03760 PF02229 Transcriptional Coactivator p15 (PC4) JO41_03765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_03765 PF00672 HAMP domain JO41_03765 PF12729 Four helix bundle sensory module for signal transduction JO41_03775 PF02542 YgbB family JO41_03775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JO41_03780 PF02542 YgbB family JO41_03800 PF00440 Bacterial regulatory proteins, tetR family JO41_03805 PF16657 Maltogenic Amylase, C-terminal domain JO41_03805 PF02903 Alpha amylase, N-terminal ig-like domain JO41_03805 PF00128 Alpha amylase, catalytic domain JO41_03825 PF12146 Serine aminopeptidase, S33 JO41_03830 PF07977 FabA-like domain JO41_03835 PF00109 Beta-ketoacyl synthase, N-terminal domain JO41_03835 PF02801 Beta-ketoacyl synthase, C-terminal domain JO41_03845 PF00698 Acyl transferase domain JO41_03850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JO41_03850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO41_03855 PF00270 DEAD/DEAH box helicase JO41_03855 PF00271 Helicase conserved C-terminal domain JO41_03865 PF05198 Translation initiation factor IF-3, N-terminal domain JO41_03865 PF00707 Translation initiation factor IF-3, C-terminal domain JO41_03870 PF01632 Ribosomal protein L35 JO41_03875 PF00453 Ribosomal protein L20 JO41_03885 PF05164 Cell division protein ZapA JO41_03890 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JO41_03895 PF00072 Response regulator receiver domain JO41_03900 PF07687 Peptidase dimerisation domain JO41_03900 PF01546 Peptidase family M20/M25/M40 JO41_03905 PF01235 Sodium:alanine symporter family JO41_03910 PF02436 Conserved carboxylase domain JO41_03910 PF00364 Biotin-requiring enzyme JO41_03910 PF00682 HMGL-like JO41_03915 PF00933 Glycosyl hydrolase family 3 N terminal domain JO41_03935 PF08546 Ketopantoate reductase PanE/ApbA C terminal JO41_03935 PF02558 Ketopantoate reductase PanE/ApbA JO41_03950 PF00881 Nitroreductase family JO41_03955 PF00005 ABC transporter JO41_03955 PF13732 Domain of unknown function (DUF4162) JO41_03975 PF12002 MgsA AAA+ ATPase C terminal JO41_03975 PF16193 AAA C-terminal domain JO41_03975 PF00004 ATPase family associated with various cellular activities (AAA) JO41_03985 PF13505 Outer membrane protein beta-barrel domain JO41_04020 PF02681 Divergent PAP2 family JO41_04025 PF08032 RNA 2'-O ribose methyltransferase substrate binding JO41_04025 PF00588 SpoU rRNA Methylase family JO41_04040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO41_04050 PF02625 XdhC and CoxI family JO41_04050 PF13478 XdhC Rossmann domain JO41_04065 PF00005 ABC transporter JO41_04070 PF08668 HDOD domain JO41_04080 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JO41_04080 PF00970 Oxidoreductase FAD-binding domain JO41_04080 PF00175 Oxidoreductase NAD-binding domain JO41_04085 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_04085 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JO41_04090 PF01212 Beta-eliminating lyase JO41_04095 PF00209 Sodium:neurotransmitter symporter family JO41_04105 PF02608 ABC transporter substrate-binding protein PnrA-like JO41_04110 PF00005 ABC transporter JO41_04115 PF02653 Branched-chain amino acid transport system / permease component JO41_04125 PF11855 Protein of unknown function (DUF3375) JO41_04145 PF02661 Fic/DOC family JO41_04145 PF12728 Helix-turn-helix domain JO41_04155 PF10509 Galactokinase galactose-binding signature JO41_04155 PF08544 GHMP kinases C terminal JO41_04155 PF00288 GHMP kinases N terminal domain JO41_04160 PF00571 CBS domain JO41_04160 PF01595 Cyclin M transmembrane N-terminal domain JO41_04160 PF03471 Transporter associated domain JO41_04180 PF13416 Bacterial extracellular solute-binding protein JO41_04185 PF17871 AAA lid domain JO41_04185 PF10431 C-terminal, D2-small domain, of ClpB protein JO41_04185 PF02861 Clp amino terminal domain, pathogenicity island component JO41_04185 PF07724 AAA domain (Cdc48 subfamily) JO41_04185 PF00004 ATPase family associated with various cellular activities (AAA) JO41_04200 PF00849 RNA pseudouridylate synthase JO41_04200 PF01479 S4 domain JO41_04210 PF00892 EamA-like transporter family JO41_04215 PF00578 AhpC/TSA family JO41_04215 PF10417 C-terminal domain of 1-Cys peroxiredoxin JO41_04220 PF07687 Peptidase dimerisation domain JO41_04220 PF01546 Peptidase family M20/M25/M40 JO41_04230 PF01381 Helix-turn-helix JO41_04260 PF01204 Trehalase JO41_04265 PF02934 GatB/GatE catalytic domain JO41_04265 PF02637 GatB domain JO41_04295 PF17820 PDZ domain JO41_04295 PF03572 Peptidase family S41 JO41_04295 PF01471 Putative peptidoglycan binding domain JO41_04300 PF04452 RNA methyltransferase JO41_04310 PF01636 Phosphotransferase enzyme family JO41_04350 PF01196 Ribosomal protein L17 JO41_04355 PF01000 RNA polymerase Rpb3/RpoA insert domain JO41_04355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JO41_04355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JO41_04360 PF00411 Ribosomal protein S11 JO41_04365 PF00416 Ribosomal protein S13/S18 JO41_04370 PF00444 Ribosomal protein L36 JO41_04375 PF00344 SecY translocase JO41_04380 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JO41_04385 PF00327 Ribosomal protein L30p/L7e JO41_04390 PF03719 Ribosomal protein S5, C-terminal domain JO41_04390 PF00333 Ribosomal protein S5, N-terminal domain JO41_04395 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JO41_04400 PF00347 Ribosomal protein L6 JO41_04405 PF00410 Ribosomal protein S8 JO41_04410 PF00281 Ribosomal protein L5 JO41_04410 PF00673 ribosomal L5P family C-terminus JO41_04415 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JO41_04415 PF00467 KOW motif JO41_04420 PF00238 Ribosomal protein L14p/L23e JO41_04425 PF00366 Ribosomal protein S17 JO41_04430 PF00831 Ribosomal L29 protein JO41_04435 PF00252 Ribosomal protein L16p/L10e JO41_04440 PF00189 Ribosomal protein S3, C-terminal domain JO41_04440 PF07650 KH domain JO41_04445 PF00237 Ribosomal protein L22p/L17e JO41_04450 PF00203 Ribosomal protein S19 JO41_04455 PF03947 Ribosomal Proteins L2, C-terminal domain JO41_04455 PF00181 Ribosomal Proteins L2, RNA binding domain JO41_04460 PF00276 Ribosomal protein L23 JO41_04465 PF00573 Ribosomal protein L4/L1 family JO41_04470 PF00297 Ribosomal protein L3 JO41_04475 PF00338 Ribosomal protein S10p/S20e JO41_04480 PF03144 Elongation factor Tu domain 2 JO41_04480 PF03143 Elongation factor Tu C-terminal domain JO41_04480 PF00009 Elongation factor Tu GTP binding domain JO41_04500 PF03484 tRNA synthetase B5 domain JO41_04500 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JO41_04520 PF02673 Bacitracin resistance protein BacA JO41_04525 PF17854 FtsK alpha domain JO41_04525 PF01580 FtsK/SpoIIIE family JO41_04525 PF09397 Ftsk gamma domain JO41_04540 PF01029 NusB family JO41_04545 PF13145 PPIC-type PPIASE domain JO41_04555 PF01026 TatD related DNase JO41_04565 PF03330 Lytic transglycolase JO41_04615 PF17863 AAA lid domain JO41_04615 PF07726 ATPase family associated with various cellular activities (AAA) JO41_04655 PF05762 VWA domain containing CoxE-like protein JO41_04660 PF00580 UvrD/REP helicase N-terminal domain JO41_04660 PF12705 PD-(D/E)XK nuclease superfamily JO41_04660 PF13361 UvrD-like helicase C-terminal domain JO41_04665 PF13635 Domain of unknown function (DUF4143) JO41_04665 PF13173 AAA domain JO41_04675 PF00308 Bacterial dnaA protein JO41_04675 PF08299 Bacterial dnaA protein helix-turn-helix JO41_04675 PF11638 DnaA N-terminal domain JO41_04680 PF01547 Bacterial extracellular solute-binding protein JO41_04685 PF00005 ABC transporter JO41_04685 PF08402 TOBE domain JO41_04690 PF00528 Binding-protein-dependent transport system inner membrane component JO41_04695 PF03459 TOBE domain JO41_04695 PF17912 MalK OB fold domain JO41_04695 PF00005 ABC transporter JO41_04705 PF00155 Aminotransferase class I and II JO41_04710 PF02028 BCCT, betaine/carnitine/choline family transporter JO41_04715 PF12804 MobA-like NTP transferase domain JO41_04730 PF02446 4-alpha-glucanotransferase JO41_04740 PF00011 Hsp20/alpha crystallin family JO41_04750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JO41_04750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JO41_04755 PF00258 Flavodoxin JO41_04765 PF13185 GAF domain JO41_04775 PF17191 RecG wedge domain JO41_04775 PF00270 DEAD/DEAH box helicase JO41_04775 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JO41_04780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JO41_04785 PF00005 ABC transporter JO41_04790 PF02687 FtsX-like permease family JO41_04790 PF00005 ABC transporter JO41_04790 PF12704 MacB-like periplasmic core domain JO41_04795 PF12704 MacB-like periplasmic core domain JO41_04795 PF02687 FtsX-like permease family JO41_04795 PF00005 ABC transporter JO41_04830 PF00268 Ribonucleotide reductase, small chain JO41_04835 PF01554 MatE JO41_04840 PF00664 ABC transporter transmembrane region JO41_04840 PF00005 ABC transporter JO41_04845 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JO41_04900 PF13280 WYL domain JO41_04900 PF08279 HTH domain JO41_04910 PF00005 ABC transporter JO41_04910 PF00664 ABC transporter transmembrane region JO41_04915 PF01177 Asp/Glu/Hydantoin racemase JO41_04920 PF03193 RsgA GTPase JO41_04925 PF00440 Bacterial regulatory proteins, tetR family JO41_04925 PF17932 Tetracyclin repressor-like, C-terminal domain JO41_04940 PF00664 ABC transporter transmembrane region JO41_04940 PF00005 ABC transporter JO41_04945 PF00005 ABC transporter JO41_04945 PF00664 ABC transporter transmembrane region JO41_04950 PF00005 ABC transporter JO41_04970 PF00005 ABC transporter JO41_04970 PF00664 ABC transporter transmembrane region JO41_04975 PF08011 PD-(D/E)XK nuclease superfamily JO41_04975 PF09820 Predicted AAA-ATPase JO41_04995 PF00403 Heavy-metal-associated domain JO41_05005 PF01022 Bacterial regulatory protein, arsR family JO41_05010 PF05958 tRNA (Uracil-5-)-methyltransferase JO41_05030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JO41_05030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JO41_05035 PF00183 Hsp90 protein JO41_05040 PF01926 50S ribosome-binding GTPase JO41_05040 PF06071 Protein of unknown function (DUF933) JO41_05045 PF17674 HHH domain JO41_05045 PF00575 S1 RNA binding domain JO41_05045 PF09371 Tex-like protein N-terminal domain JO41_05045 PF16921 Tex protein YqgF-like domain JO41_05060 PF00749 tRNA synthetases class I (E and Q), catalytic domain JO41_05065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO41_05065 PF03129 Anticodon binding domain JO41_05075 PF03009 Glycerophosphoryl diester phosphodiesterase family JO41_05080 PF02698 DUF218 domain JO41_05110 PF01256 Carbohydrate kinase JO41_05110 PF03853 YjeF-related protein N-terminus JO41_05120 PF02926 THUMP domain JO41_05120 PF01170 Putative RNA methylase family UPF0020 JO41_05125 PF03773 Predicted permease JO41_05145 PF04552 Sigma-54, DNA binding domain JO41_05145 PF00309 Sigma-54 factor, Activator interacting domain (AID) JO41_05145 PF04963 Sigma-54 factor, core binding domain JO41_05200 PF01206 Sulfurtransferase TusA JO41_05210 PF00586 AIR synthase related protein, N-terminal domain JO41_05210 PF02769 AIR synthase related protein, C-terminal domain JO41_05225 PF00534 Glycosyl transferases group 1 JO41_05225 PF13439 Glycosyltransferase Family 4 JO41_05230 PF00005 ABC transporter JO41_05230 PF12848 ABC transporter JO41_05250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_05250 PF00672 HAMP domain JO41_05250 PF02743 Cache domain JO41_05260 PF00557 Metallopeptidase family M24 JO41_05265 PF00226 DnaJ domain JO41_05265 PF01556 DnaJ C terminal domain JO41_05265 PF00684 DnaJ central domain JO41_05285 PF17158 Membrane-associated sensor, integral membrane domain JO41_05285 PF00990 Diguanylate cyclase, GGDEF domain JO41_05290 PF13426 PAS domain JO41_05290 PF00990 Diguanylate cyclase, GGDEF domain JO41_05290 PF00563 EAL domain JO41_05295 PF03553 Na+/H+ antiporter family JO41_05310 PF09518 HindIII restriction endonuclease JO41_05315 PF01555 DNA methylase JO41_05385 PF00795 Carbon-nitrogen hydrolase JO41_05410 PF03102 NeuB family JO41_05410 PF08666 SAF domain JO41_05415 PF02767 DNA polymerase III beta subunit, central domain JO41_05415 PF00712 DNA polymerase III beta subunit, N-terminal domain JO41_05415 PF02768 DNA polymerase III beta subunit, C-terminal domain JO41_05440 PF08207 Elongation factor P (EF-P) KOW-like domain JO41_05440 PF09285 Elongation factor P, C-terminal JO41_05440 PF01132 Elongation factor P (EF-P) OB domain JO41_05450 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JO41_05450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO41_05455 PF01066 CDP-alcohol phosphatidyltransferase JO41_05490 PF01048 Phosphorylase superfamily JO41_05495 PF01551 Peptidase family M23 JO41_05500 PF00768 D-alanyl-D-alanine carboxypeptidase JO41_05500 PF07943 Penicillin-binding protein 5, C-terminal domain JO41_05505 PF04055 Radical SAM superfamily JO41_05505 PF01938 TRAM domain JO41_05505 PF00919 Uncharacterized protein family UPF0004 JO41_05520 PF00144 Beta-lactamase JO41_05525 PF00753 Metallo-beta-lactamase superfamily JO41_05595 PF01165 Ribosomal protein S21 JO41_05620 PF00291 Pyridoxal-phosphate dependent enzyme JO41_05620 PF14821 Threonine synthase N terminus JO41_05650 PF01432 Peptidase family M3 JO41_05650 PF08439 Oligopeptidase F JO41_05675 PF00158 Sigma-54 interaction domain JO41_05675 PF02954 Bacterial regulatory protein, Fis family JO41_05675 PF00072 Response regulator receiver domain JO41_05695 PF00571 CBS domain JO41_05695 PF00478 IMP dehydrogenase / GMP reductase domain JO41_05700 PF00365 Phosphofructokinase JO41_05710 PF00005 ABC transporter JO41_05710 PF08402 TOBE domain JO41_05715 PF00528 Binding-protein-dependent transport system inner membrane component JO41_05720 PF00528 Binding-protein-dependent transport system inner membrane component JO41_05735 PF00390 Malic enzyme, N-terminal domain JO41_05735 PF03949 Malic enzyme, NAD binding domain JO41_05750 PF00005 ABC transporter JO41_05795 PF00155 Aminotransferase class I and II JO41_05800 PF01370 NAD dependent epimerase/dehydratase family JO41_05810 PF01467 Cytidylyltransferase-like JO41_05820 PF01268 Formate--tetrahydrofolate ligase JO41_05825 PF05525 Branched-chain amino acid transport protein JO41_05830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_05830 PF02743 Cache domain JO41_05830 PF00672 HAMP domain JO41_05835 PF01551 Peptidase family M23 JO41_05840 PF00691 OmpA family JO41_05845 PF01121 Dephospho-CoA kinase JO41_05865 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JO41_05865 PF14572 Phosphoribosyl synthetase-associated domain JO41_05885 PF06874 Firmicute fructose-1,6-bisphosphatase JO41_05890 PF02446 4-alpha-glucanotransferase JO41_05895 PF16363 GDP-mannose 4,6 dehydratase JO41_05965 PF04024 PspC domain JO41_05975 PF03551 Transcriptional regulator PadR-like family JO41_05990 PF01791 DeoC/LacD family aldolase JO41_05995 PF00962 Adenosine/AMP deaminase JO41_06000 PF01134 Glucose inhibited division protein A JO41_06000 PF13932 GidA associated domain JO41_06010 PF05496 Holliday junction DNA helicase RuvB P-loop domain JO41_06010 PF05491 RuvB C-terminal winged helix domain JO41_06010 PF17864 RuvB AAA lid domain JO41_06015 PF02743 Cache domain JO41_06015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06015 PF00672 HAMP domain JO41_06020 PF01592 NifU-like N terminal domain JO41_06030 PF12392 Collagenase JO41_06030 PF01136 Peptidase family U32 JO41_06065 PF03764 Elongation factor G, domain IV JO41_06065 PF03144 Elongation factor Tu domain 2 JO41_06065 PF00009 Elongation factor Tu GTP binding domain JO41_06065 PF14492 Elongation Factor G, domain II JO41_06065 PF00679 Elongation factor G C-terminus JO41_06070 PF01106 NifU-like domain JO41_06085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO41_06085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO41_06085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO41_06085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO41_06090 PF01551 Peptidase family M23 JO41_06090 PF04225 Opacity-associated protein A LysM-like domain JO41_06125 PF11799 impB/mucB/samB family C-terminal domain JO41_06125 PF00817 impB/mucB/samB family JO41_06125 PF11798 IMS family HHH motif JO41_06160 PF00589 Phage integrase family JO41_06160 PF02899 Phage integrase, N-terminal SAM-like domain JO41_06175 PF01420 Type I restriction modification DNA specificity domain JO41_06185 PF02384 N-6 DNA Methylase JO41_06190 PF02743 Cache domain JO41_06190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06190 PF00672 HAMP domain JO41_06195 PF03577 Peptidase family C69 JO41_06200 PF02743 Cache domain JO41_06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06200 PF00672 HAMP domain JO41_06210 PF02743 Cache domain JO41_06210 PF00672 HAMP domain JO41_06210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_06220 PF02872 5'-nucleotidase, C-terminal domain JO41_06220 PF00149 Calcineurin-like phosphoesterase JO41_06230 PF02080 TrkA-C domain JO41_06230 PF00999 Sodium/hydrogen exchanger family JO41_06230 PF03471 Transporter associated domain JO41_06245 PF01171 PP-loop family JO41_06260 PF08543 Phosphomethylpyrimidine kinase JO41_06265 PF00591 Glycosyl transferase family, a/b domain JO41_06265 PF02885 Glycosyl transferase family, helical bundle domain JO41_06265 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JO41_06270 PF01368 DHH family JO41_06270 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JO41_06270 PF02272 DHHA1 domain JO41_06270 PF17768 RecJ OB domain JO41_06285 PF00486 Transcriptional regulatory protein, C terminal JO41_06285 PF00072 Response regulator receiver domain JO41_06290 PF00672 HAMP domain JO41_06290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO41_06290 PF00512 His Kinase A (phospho-acceptor) domain JO41_06300 PF00595 PDZ domain JO41_06305 PF00005 ABC transporter JO41_06305 PF09383 NIL domain JO41_06310 PF00528 Binding-protein-dependent transport system inner membrane component JO41_06315 PF01791 DeoC/LacD family aldolase JO41_06320 PF13407 Periplasmic binding protein domain JO41_06325 PF02653 Branched-chain amino acid transport system / permease component JO41_06330 PF02653 Branched-chain amino acid transport system / permease component JO41_06335 PF00005 ABC transporter JO41_06340 PF04198 Putative sugar-binding domain JO41_06345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JO41_06345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JO41_06360 PF00528 Binding-protein-dependent transport system inner membrane component JO41_06365 PF00528 Binding-protein-dependent transport system inner membrane component JO41_06370 PF00271 Helicase conserved C-terminal domain JO41_06370 PF00270 DEAD/DEAH box helicase JO41_06380 PF01008 Initiation factor 2 subunit family JO41_06390 PF03033 Glycosyltransferase family 28 N-terminal domain JO41_06390 PF04101 Glycosyltransferase family 28 C-terminal domain JO41_06430 PF00056 lactate/malate dehydrogenase, NAD binding domain JO41_06430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JO41_06435 PF03949 Malic enzyme, NAD binding domain JO41_06435 PF00390 Malic enzyme, N-terminal domain JO41_06445 PF00436 Single-strand binding protein family JO41_06490 PF02773 S-adenosylmethionine synthetase, C-terminal domain JO41_06490 PF02772 S-adenosylmethionine synthetase, central domain JO41_06490 PF00438 S-adenosylmethionine synthetase, N-terminal domain JO41_06500 PF00488 MutS domain V JO41_06500 PF01713 Smr domain JO41_06515 PF09338 Glycine/sarcosine/betaine reductase component B subunits JO41_06520 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO41_06525 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO41_06530 PF02811 PHP domain JO41_06540 PF13545 Crp-like helix-turn-helix domain JO41_06540 PF00027 Cyclic nucleotide-binding domain JO41_06545 PF00271 Helicase conserved C-terminal domain JO41_06545 PF17757 UvrB interaction domain JO41_06545 PF02559 CarD-like/TRCF domain JO41_06545 PF00270 DEAD/DEAH box helicase JO41_06545 PF03461 TRCF domain JO41_06710 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JO41_06715 PF01039 Carboxyl transferase domain JO41_06720 PF00289 Biotin carboxylase, N-terminal domain JO41_06720 PF02785 Biotin carboxylase C-terminal domain JO41_06720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JO41_06725 PF00364 Biotin-requiring enzyme JO41_06730 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JO41_06730 PF12241 Trans-2-enoyl-CoA reductase catalytic region JO41_06730 PF07055 Enoyl reductase FAD binding domain JO41_06735 PF10531 SLBB domain JO41_06735 PF13375 RnfC Barrel sandwich hybrid domain JO41_06735 PF13237 4Fe-4S dicluster domain JO41_06735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JO41_06740 PF03116 NQR2, RnfD, RnfE family JO41_06745 PF04205 FMN-binding domain JO41_06750 PF02508 Rnf-Nqr subunit, membrane protein JO41_06755 PF02508 Rnf-Nqr subunit, membrane protein JO41_06760 PF04060 Putative Fe-S cluster JO41_06765 PF01926 50S ribosome-binding GTPase JO41_06765 PF07650 KH domain JO41_06770 PF00950 ABC 3 transport family JO41_06775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO41_06775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO41_06780 PF01546 Peptidase family M20/M25/M40 JO41_06780 PF07687 Peptidase dimerisation domain JO41_06785 PF02384 N-6 DNA Methylase JO41_06785 PF12161 HsdM N-terminal domain JO41_06795 PF01420 Type I restriction modification DNA specificity domain JO41_06805 PF18766 SWI2/SNF2 ATPase JO41_06805 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JO41_06805 PF12008 Type I restriction and modification enzyme - subunit R C terminal JO41_06815 PF04536 TPM domain JO41_06825 PF00380 Ribosomal protein S9/S16 JO41_06830 PF00572 Ribosomal protein L13 JO41_06845 PF02810 SEC-C motif JO41_06845 PF07516 SecA Wing and Scaffold domain JO41_06845 PF01043 SecA preprotein cross-linking domain JO41_06845 PF07517 SecA DEAD-like domain JO41_06910 PF02502 Ribose/Galactose Isomerase JO41_06925 PF01638 HxlR-like helix-turn-helix JO41_06970 PF02609 Exonuclease VII small subunit JO41_06975 PF01119 DNA mismatch repair protein, C-terminal domain JO41_06975 PF08676 MutL C terminal dimerisation domain JO41_06980 PF05872 Bacterial protein of unknown function (DUF853) JO41_06990 PF00072 Response regulator receiver domain JO41_06995 PF00488 MutS domain V JO41_06995 PF01713 Smr domain JO41_07000 PF00669 Bacterial flagellin N-terminal helical region JO41_07000 PF00700 Bacterial flagellin C-terminal helical region JO41_07015 PF00708 Acylphosphatase JO41_07050 PF00391 PEP-utilising enzyme, mobile domain JO41_07050 PF05524 PEP-utilising enzyme, N-terminal JO41_07050 PF02896 PEP-utilising enzyme, TIM barrel domain JO41_07055 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JO41_07055 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JO41_07060 PF03390 2-hydroxycarboxylate transporter family JO41_07070 PF04223 Citrate lyase, alpha subunit (CitF) JO41_07075 PF03328 HpcH/HpaI aldolase/citrate lyase family JO41_07080 PF06857 Malonate decarboxylase delta subunit (MdcD) JO41_07085 PF08218 Citrate lyase ligase C-terminal domain JO41_07115 PF01926 50S ribosome-binding GTPase JO41_07115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JO41_07130 PF04545 Sigma-70, region 4 JO41_07130 PF04539 Sigma-70 region 3 JO41_07130 PF04542 Sigma-70 region 2 JO41_07150 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JO41_07150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JO41_07150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JO41_07175 PF03030 Inorganic H+ pyrophosphatase JO41_07180 PF00579 tRNA synthetases class I (W and Y) JO41_07195 PF01027 Inhibitor of apoptosis-promoting Bax1 JO41_07225 PF03717 Penicillin-binding Protein dimerisation domain JO41_07225 PF00905 Penicillin binding protein transpeptidase domain JO41_07225 PF03793 PASTA domain JO41_07505 PF00293 NUDIX domain JO41_07530 PF01252 Signal peptidase (SPase) II JO41_07540 PF01475 Ferric uptake regulator family JO41_07550 PF00595 PDZ domain JO41_07555 PF18073 Rubredoxin metal binding domain JO41_07555 PF06745 KaiC JO41_07575 PF01979 Amidohydrolase family JO41_07580 PF01979 Amidohydrolase family JO41_07580 PF13382 Adenine deaminase C-terminal domain JO41_07585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JO41_07585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JO41_07590 PF03450 CO dehydrogenase flavoprotein C-terminal domain JO41_07590 PF00941 FAD binding domain in molybdopterin dehydrogenase JO41_07595 PF01799 [2Fe-2S] binding domain JO41_07595 PF00111 2Fe-2S iron-sulfur cluster binding domain JO41_07605 PF12833 Helix-turn-helix domain JO41_07605 PF06445 GyrI-like small molecule binding domain JO41_07620 PF00919 Uncharacterized protein family UPF0004 JO41_07620 PF04055 Radical SAM superfamily JO41_07635 PF06969 HemN C-terminal domain JO41_07635 PF04055 Radical SAM superfamily JO41_07640 PF10502 Signal peptidase, peptidase S26 JO41_07645 PF01668 SmpB protein JO41_07655 PF13307 Helicase C-terminal domain JO41_07655 PF06733 DEAD_2 JO41_07675 PF00672 HAMP domain JO41_07675 PF02743 Cache domain JO41_07675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_07685 PF01202 Shikimate kinase JO41_07720 PF01813 ATP synthase subunit D JO41_07725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO41_07725 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO41_07730 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO41_07730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO41_07730 PF16886 ATPsynthase alpha/beta subunit N-term extension JO41_07740 PF01991 ATP synthase (E/31 kDa) subunit JO41_07745 PF01263 Aldose 1-epimerase JO41_07755 PF02780 Transketolase, C-terminal domain JO41_07755 PF02779 Transketolase, pyrimidine binding domain JO41_07755 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JO41_07760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JO41_07765 PF01161 Phosphatidylethanolamine-binding protein JO41_07770 PF03575 Peptidase family S51 JO41_07790 PF16197 Ketoacyl-synthetase C-terminal extension JO41_07790 PF00109 Beta-ketoacyl synthase, N-terminal domain JO41_07790 PF14765 Polyketide synthase dehydratase JO41_07790 PF08240 Alcohol dehydrogenase GroES-like domain JO41_07790 PF00698 Acyl transferase domain JO41_07790 PF00550 Phosphopantetheine attachment site JO41_07790 PF08659 KR domain JO41_07790 PF02801 Beta-ketoacyl synthase, C-terminal domain JO41_07860 PF02525 Flavodoxin-like fold JO41_07865 PF08546 Ketopantoate reductase PanE/ApbA C terminal JO41_07865 PF02558 Ketopantoate reductase PanE/ApbA JO41_07870 PF00459 Inositol monophosphatase family JO41_07875 PF00005 ABC transporter JO41_07895 PF01047 MarR family JO41_07915 PF04536 TPM domain JO41_07920 PF10371 Domain of unknown function JO41_07920 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JO41_07920 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JO41_07920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO41_07920 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JO41_07925 PF00271 Helicase conserved C-terminal domain JO41_07925 PF12300 ATP-dependent RNA helicase RhlB JO41_07925 PF00270 DEAD/DEAH box helicase JO41_07930 PF01546 Peptidase family M20/M25/M40 JO41_07930 PF07687 Peptidase dimerisation domain JO41_07935 PF00521 DNA gyrase/topoisomerase IV, subunit A JO41_07940 PF00501 AMP-binding enzyme JO41_07950 PF02386 Cation transport protein JO41_07965 PF01025 GrpE JO41_07970 PF00012 Hsp70 protein JO41_07975 PF00684 DnaJ central domain JO41_07975 PF00226 DnaJ domain JO41_07975 PF01556 DnaJ C terminal domain JO41_07985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JO41_07985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JO41_08000 PF09369 Domain of unknown function (DUF1998) JO41_08000 PF00270 DEAD/DEAH box helicase JO41_08000 PF00271 Helicase conserved C-terminal domain JO41_08005 PF13195 Protein of unknown function (DUF4011) JO41_08005 PF13086 AAA domain JO41_08005 PF13195 Protein of unknown function (DUF4011) JO41_08005 PF13086 AAA domain JO41_08005 PF13087 AAA domain JO41_08005 PF13087 AAA domain JO41_08010 PF01613 Flavin reductase like domain JO41_08020 PF01743 Poly A polymerase head domain JO41_08020 PF13735 tRNA nucleotidyltransferase domain 2 putative JO41_08020 PF12627 Probable RNA and SrmB- binding site of polymerase A JO41_08025 PF10576 Iron-sulfur binding domain of endonuclease III JO41_08025 PF00730 HhH-GPD superfamily base excision DNA repair protein JO41_08025 PF00633 Helix-hairpin-helix motif JO41_08025 PF14815 NUDIX domain JO41_08040 PF02875 Mur ligase family, glutamate ligase domain JO41_08040 PF08245 Mur ligase middle domain JO41_08040 PF01225 Mur ligase family, catalytic domain JO41_08060 PF00730 HhH-GPD superfamily base excision DNA repair protein JO41_08080 PF03781 Sulfatase-modifying factor enzyme 1 JO41_08085 PF08011 PD-(D/E)XK nuclease superfamily JO41_08085 PF09820 Predicted AAA-ATPase JO41_08375 PF00436 Single-strand binding protein family JO41_08415 PF05697 Bacterial trigger factor protein (TF) JO41_08415 PF05698 Bacterial trigger factor protein (TF) C-terminus JO41_08415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO41_08420 PF00574 Clp protease JO41_08425 PF06689 ClpX C4-type zinc finger JO41_08425 PF10431 C-terminal, D2-small domain, of ClpB protein JO41_08425 PF07724 AAA domain (Cdc48 subfamily) JO41_08435 PF02875 Mur ligase family, glutamate ligase domain JO41_08435 PF01225 Mur ligase family, catalytic domain JO41_08435 PF08245 Mur ligase middle domain JO41_08455 PF12146 Serine aminopeptidase, S33 JO41_08470 PF00679 Elongation factor G C-terminus JO41_08470 PF14492 Elongation Factor G, domain II JO41_08470 PF00009 Elongation factor Tu GTP binding domain JO41_08470 PF03144 Elongation factor Tu domain 2 JO41_08470 PF06421 GTP-binding protein LepA C-terminus JO41_08475 PF03485 Arginyl tRNA synthetase N terminal domain JO41_08475 PF00750 tRNA synthetases class I (R) JO41_08475 PF05746 DALR anticodon binding domain JO41_08495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO41_08495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO41_08500 PF00696 Amino acid kinase family JO41_08505 PF03606 C4-dicarboxylate anaerobic carrier JO41_08515 PF08245 Mur ligase middle domain JO41_08515 PF02875 Mur ligase family, glutamate ligase domain JO41_08520 PF00156 Phosphoribosyl transferase domain JO41_08525 PF00152 tRNA synthetases class II (D, K and N) JO41_08525 PF01336 OB-fold nucleic acid binding domain JO41_08540 PF01638 HxlR-like helix-turn-helix JO41_08565 PF01555 DNA methylase JO41_08570 PF04556 DpnII restriction endonuclease JO41_08580 PF02086 D12 class N6 adenine-specific DNA methyltransferase JO41_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_08605 PF04324 BFD-like [2Fe-2S] binding domain JO41_08610 PF01266 FAD dependent oxidoreductase JO41_08615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JO41_08615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JO41_08630 PF00085 Thioredoxin JO41_08635 PF13277 YmdB-like protein JO41_08640 PF00266 Aminotransferase class-V JO41_08650 PF01458 Uncharacterized protein family (UPF0051) JO41_08655 PF00005 ABC transporter JO41_08665 PF01264 Chorismate synthase JO41_08700 PF02601 Exonuclease VII, large subunit JO41_08700 PF13742 OB-fold nucleic acid binding domain JO41_08715 PF00149 Calcineurin-like phosphoesterase JO41_08720 PF00574 Clp protease JO41_08745 PF10502 Signal peptidase, peptidase S26 JO41_08755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_08755 PF00672 HAMP domain JO41_08755 PF02743 Cache domain JO41_08770 PF04055 Radical SAM superfamily JO41_08780 PF00691 OmpA family JO41_08785 PF00106 short chain dehydrogenase JO41_08795 PF12705 PD-(D/E)XK nuclease superfamily JO41_08815 PF02770 Acyl-CoA dehydrogenase, middle domain JO41_08815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JO41_08815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JO41_08820 PF00171 Aldehyde dehydrogenase family JO41_08825 PF01699 Sodium/calcium exchanger protein JO41_08845 PF01470 Pyroglutamyl peptidase JO41_08875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO41_08875 PF00460 Flagella basal body rod protein JO41_08880 PF00460 Flagella basal body rod protein JO41_08880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO41_08885 PF10135 Rod binding protein JO41_08900 PF00005 ABC transporter JO41_08935 PF02911 Formyl transferase, C-terminal domain JO41_08935 PF00551 Formyl transferase JO41_08940 PF01327 Polypeptide deformylase JO41_08960 PF00113 Enolase, C-terminal TIM barrel domain JO41_08960 PF03952 Enolase, N-terminal domain JO41_08965 PF01042 Endoribonuclease L-PSP JO41_08980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO41_08985 PF00829 Ribosomal prokaryotic L21 protein JO41_08995 PF01016 Ribosomal L27 protein JO41_09000 PF01926 50S ribosome-binding GTPase JO41_09000 PF01018 GTP1/OBG JO41_09005 PF01467 Cytidylyltransferase-like JO41_09030 PF17384 RimP C-terminal SH3 domain JO41_09030 PF02576 RimP N-terminal domain JO41_09035 PF13184 NusA-like KH domain JO41_09035 PF08529 NusA N-terminal domain JO41_09035 PF00575 S1 RNA binding domain JO41_09040 PF00009 Elongation factor Tu GTP binding domain JO41_09040 PF11987 Translation-initiation factor 2 JO41_09040 PF04760 Translation initiation factor IF-2, N-terminal region JO41_09045 PF02033 Ribosome-binding factor A JO41_09050 PF01509 TruB family pseudouridylate synthase (N terminal domain) JO41_09050 PF16198 tRNA pseudouridylate synthase B C-terminal domain JO41_09055 PF01687 Riboflavin kinase JO41_09055 PF06574 FAD synthetase JO41_09060 PF00312 Ribosomal protein S15 JO41_09065 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JO41_09065 PF01138 3' exoribonuclease family, domain 1 JO41_09065 PF03725 3' exoribonuclease family, domain 2 JO41_09065 PF00575 S1 RNA binding domain JO41_09065 PF00013 KH domain JO41_09070 PF00692 dUTPase JO41_09085 PF02743 Cache domain JO41_09085 PF00672 HAMP domain JO41_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09090 PF01595 Cyclin M transmembrane N-terminal domain JO41_09090 PF00571 CBS domain JO41_09090 PF03471 Transporter associated domain JO41_09105 PF00672 HAMP domain JO41_09105 PF17202 Single cache domain 3 JO41_09105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09115 PF13419 Haloacid dehalogenase-like hydrolase JO41_09120 PF00892 EamA-like transporter family JO41_09125 PF12683 Protein of unknown function (DUF3798) JO41_09130 PF00005 ABC transporter JO41_09150 PF00849 RNA pseudouridylate synthase JO41_09150 PF01479 S4 domain JO41_09170 PF00528 Binding-protein-dependent transport system inner membrane component JO41_09175 PF00005 ABC transporter JO41_09190 PF01048 Phosphorylase superfamily JO41_09245 PF01814 Hemerythrin HHE cation binding domain JO41_09250 PF00128 Alpha amylase, catalytic domain JO41_09250 PF17999 Pullulanase N1-terminal domain JO41_09250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JO41_09255 PF13416 Bacterial extracellular solute-binding protein JO41_09260 PF02903 Alpha amylase, N-terminal ig-like domain JO41_09260 PF00128 Alpha amylase, catalytic domain JO41_09260 PF16657 Maltogenic Amylase, C-terminal domain JO41_09270 PF00528 Binding-protein-dependent transport system inner membrane component JO41_09275 PF00528 Binding-protein-dependent transport system inner membrane component JO41_09290 PF13361 UvrD-like helicase C-terminal domain JO41_09290 PF00580 UvrD/REP helicase N-terminal domain JO41_09305 PF00465 Iron-containing alcohol dehydrogenase JO41_09320 PF02502 Ribose/Galactose Isomerase JO41_09330 PF00664 ABC transporter transmembrane region JO41_09330 PF00005 ABC transporter JO41_09330 PF04954 Siderophore-interacting protein JO41_09330 PF08021 Siderophore-interacting FAD-binding domain JO41_09335 PF00005 ABC transporter JO41_09335 PF00664 ABC transporter transmembrane region JO41_09340 PF00155 Aminotransferase class I and II JO41_09345 PF06826 Predicted Permease Membrane Region JO41_09400 PF01661 Macro domain JO41_09435 PF03963 Flagellar hook capping protein - N-terminal region JO41_09440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO41_09440 PF07559 Flagellar basal body protein FlaE JO41_09440 PF00460 Flagella basal body rod protein JO41_09450 PF01618 MotA/TolQ/ExbB proton channel family JO41_09455 PF13677 Membrane MotB of proton-channel complex MotA/MotB JO41_09455 PF00691 OmpA family JO41_09460 PF03748 Flagellar basal body-associated protein FliL JO41_09465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO41_09465 PF02154 Flagellar motor switch protein FliM JO41_09470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO41_09470 PF04509 CheC-like family JO41_09480 PF00813 FliP family JO41_09485 PF01313 Bacterial export proteins, family 3 JO41_09495 PF01312 FlhB HrpN YscU SpaS Family JO41_09500 PF00771 FHIPEP family JO41_09505 PF00448 SRP54-type protein, GTPase domain JO41_09510 PF10609 NUBPL iron-transfer P-loop NTPase JO41_09515 PF00535 Glycosyl transferase family 2 JO41_09520 PF01554 MatE JO41_09530 PF00773 RNB domain JO41_09535 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO41_09545 PF02625 XdhC and CoxI family JO41_09545 PF13478 XdhC Rossmann domain JO41_09550 PF02811 PHP domain JO41_09550 PF07733 Bacterial DNA polymerase III alpha NTPase domain JO41_09550 PF14579 Helix-hairpin-helix motif JO41_09550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JO41_09560 PF02653 Branched-chain amino acid transport system / permease component JO41_09565 PF00005 ABC transporter JO41_09570 PF13407 Periplasmic binding protein domain JO41_09570 PF18610 Periplasmic binding protein domain JO41_09575 PF00133 tRNA synthetases class I (I, L, M and V) JO41_09575 PF10458 Valyl tRNA synthetase tRNA binding arm JO41_09575 PF08264 Anticodon-binding domain of tRNA JO41_09595 PF01973 Protein of unknown function DUF115 JO41_09615 PF01300 Telomere recombination JO41_09620 PF00589 Phage integrase family JO41_09620 PF02899 Phage integrase, N-terminal SAM-like domain JO41_09625 PF01131 DNA topoisomerase JO41_09625 PF01751 Toprim domain JO41_09625 PF01396 Topoisomerase DNA binding C4 zinc finger JO41_09630 PF02481 DNA recombination-mediator protein A JO41_09630 PF17782 DprA winged helix domain JO41_09645 PF00999 Sodium/hydrogen exchanger family JO41_09650 PF05175 Methyltransferase small domain JO41_09650 PF08468 Methyltransferase small domain N-terminal JO41_09655 PF00842 Alanine racemase, C-terminal domain JO41_09655 PF01168 Alanine racemase, N-terminal domain JO41_09660 PF03239 Iron permease FTR1 family JO41_09665 PF10634 Fe2+ transport protein JO41_09680 PF00005 ABC transporter JO41_09680 PF12704 MacB-like periplasmic core domain JO41_09680 PF02687 FtsX-like permease family JO41_09685 PF00005 ABC transporter JO41_09720 PF08241 Methyltransferase domain JO41_09765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO41_09765 PF02272 DHHA1 domain JO41_09765 PF01411 tRNA synthetases class II (A) JO41_09770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09770 PF00672 HAMP domain JO41_09770 PF02743 Cache domain JO41_09780 PF00270 DEAD/DEAH box helicase JO41_09780 PF16124 RecQ zinc-binding JO41_09780 PF00570 HRDC domain JO41_09780 PF09382 RQC domain JO41_09780 PF00271 Helicase conserved C-terminal domain JO41_09790 PF00149 Calcineurin-like phosphoesterase JO41_09790 PF17936 Bacterial Ig domain JO41_09790 PF02872 5'-nucleotidase, C-terminal domain JO41_09800 PF00501 AMP-binding enzyme JO41_09805 PF01230 HIT domain JO41_09810 PF00288 GHMP kinases N terminal domain JO41_09810 PF08544 GHMP kinases C terminal JO41_09815 PF04026 SpoVG JO41_09825 PF14693 Ribosomal protein TL5, C-terminal domain JO41_09825 PF01386 Ribosomal L25p family JO41_09830 PF01171 PP-loop family JO41_09845 PF01641 SelR domain JO41_09845 PF01625 Peptide methionine sulfoxide reductase JO41_09855 PF02743 Cache domain JO41_09855 PF00672 HAMP domain JO41_09855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_09860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO41_09860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JO41_09865 PF03616 Sodium/glutamate symporter JO41_09875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JO41_09875 PF00364 Biotin-requiring enzyme JO41_09875 PF00289 Biotin carboxylase, N-terminal domain JO41_09875 PF02785 Biotin carboxylase C-terminal domain JO41_09880 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JO41_09885 PF01144 Coenzyme A transferase JO41_09890 PF01144 Coenzyme A transferase JO41_09895 PF01039 Carboxyl transferase domain JO41_09900 PF03616 Sodium/glutamate symporter JO41_09905 PF01869 BadF/BadG/BcrA/BcrD ATPase family JO41_09910 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO41_09915 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO41_09925 PF01475 Ferric uptake regulator family JO41_09940 PF00293 NUDIX domain JO41_09950 PF00210 Ferritin-like domain JO41_09955 PF02562 PhoH-like protein JO41_09960 PF01966 HD domain JO41_09960 PF07698 7TM receptor with intracellular HD hydrolase JO41_09960 PF07697 7TM-HD extracellular JO41_09965 PF02130 Uncharacterized protein family UPF0054 JO41_09970 PF03471 Transporter associated domain JO41_09970 PF00571 CBS domain JO41_09980 PF04002 RadC-like JAB domain JO41_09995 PF01613 Flavin reductase like domain JO41_09995 PF00753 Metallo-beta-lactamase superfamily JO41_10000 PF01588 Putative tRNA binding domain JO41_10010 PF00501 AMP-binding enzyme JO41_10010 PF13193 AMP-binding enzyme C-terminal domain JO41_10015 PF02690 Na+/Pi-cotransporter JO41_10020 PF00391 PEP-utilising enzyme, mobile domain JO41_10020 PF02896 PEP-utilising enzyme, TIM barrel domain JO41_10020 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO41_10065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO41_10065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO41_10065 PF03129 Anticodon binding domain JO41_10075 PF00162 Phosphoglycerate kinase JO41_10105 PF17239 Family of unknown function (DUF5312) JO41_10110 PF01739 CheR methyltransferase, SAM binding domain JO41_10110 PF03705 CheR methyltransferase, all-alpha domain JO41_10115 PF00072 Response regulator receiver domain JO41_10115 PF01339 CheB methylesterase JO41_10130 PF00027 Cyclic nucleotide-binding domain JO41_10130 PF13545 Crp-like helix-turn-helix domain JO41_10135 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JO41_10135 PF01565 FAD binding domain JO41_10145 PF01406 tRNA synthetases class I (C) catalytic domain JO41_10145 PF09190 DALR domain JO41_10150 PF04542 Sigma-70 region 2 JO41_10150 PF04545 Sigma-70, region 4 JO41_10150 PF04539 Sigma-70 region 3 JO41_10165 PF00696 Amino acid kinase family JO41_10170 PF00226 DnaJ domain JO41_10170 PF01556 DnaJ C terminal domain JO41_10170 PF00684 DnaJ central domain JO41_10175 PF01176 Translation initiation factor 1A / IF-1 JO41_10195 PF00834 Ribulose-phosphate 3 epimerase family JO41_10215 PF04551 GcpE protein JO41_10225 PF02540 NAD synthase JO41_10250 PF01926 50S ribosome-binding GTPase JO41_10255 PF00342 Phosphoglucose isomerase JO41_10265 PF00291 Pyridoxal-phosphate dependent enzyme JO41_10280 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JO41_10280 PF10996 Beta-Casp domain JO41_10280 PF00753 Metallo-beta-lactamase superfamily JO41_10285 PF08032 RNA 2'-O ribose methyltransferase substrate binding JO41_10285 PF00588 SpoU rRNA Methylase family JO41_10290 PF08032 RNA 2'-O ribose methyltransferase substrate binding JO41_10290 PF00588 SpoU rRNA Methylase family JO41_10310 PF13519 von Willebrand factor type A domain JO41_10315 PF18663 Pallilysin beta barrel domain JO41_10320 PF00108 Thiolase, N-terminal domain JO41_10320 PF02803 Thiolase, C-terminal domain JO41_10335 PF01588 Putative tRNA binding domain JO41_10335 PF09334 tRNA synthetases class I (M) JO41_10340 PF00005 ABC transporter JO41_10355 PF02311 AraC-like ligand binding domain JO41_10355 PF12833 Helix-turn-helix domain JO41_10370 PF00005 ABC transporter JO41_10380 PF08021 Siderophore-interacting FAD-binding domain JO41_10380 PF00005 ABC transporter JO41_10380 PF04954 Siderophore-interacting protein JO41_10380 PF00664 ABC transporter transmembrane region JO41_10390 PF07669 Eco57I restriction-modification methylase JO41_10410 PF00664 ABC transporter transmembrane region JO41_10410 PF00005 ABC transporter JO41_10415 PF00440 Bacterial regulatory proteins, tetR family JO41_10415 PF08361 MAATS-type transcriptional repressor, C-terminal region JO41_10430 PF00005 ABC transporter JO41_10475 PF00899 ThiF family JO41_10480 PF00953 Glycosyl transferase family 4 JO41_10485 PF02075 Crossover junction endodeoxyribonuclease RuvC JO41_10490 PF01850 PIN domain JO41_10505 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JO41_10510 PF00958 GMP synthase C terminal domain JO41_10510 PF00117 Glutamine amidotransferase class-I JO41_10515 PF12170 DNA polymerase III tau subunit V interacting with alpha JO41_10515 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JO41_10515 PF12169 DNA polymerase III subunits gamma and tau domain III JO41_10530 PF02575 YbaB/EbfC DNA-binding family JO41_10535 PF13662 Toprim domain JO41_10535 PF02132 RecR protein JO41_10560 PF00941 FAD binding domain in molybdopterin dehydrogenase JO41_10570 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JO41_10570 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JO41_10575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO41_10580 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO41_10580 PF00933 Glycosyl hydrolase family 3 N terminal domain JO41_10585 PF07075 Protein of unknown function (DUF1343) JO41_10595 PF13488 Glycine zipper JO41_10595 PF00691 OmpA family JO41_10600 PF01476 LysM domain JO41_10600 PF01464 Transglycosylase SLT domain JO41_10650 PF04343 Protein of unknown function, DUF488 JO41_10675 PF08275 DNA primase catalytic core, N-terminal domain JO41_10675 PF01807 CHC2 zinc finger JO41_10680 PF03979 Sigma-70 factor, region 1.1 JO41_10680 PF04539 Sigma-70 region 3 JO41_10680 PF00140 Sigma-70 factor, region 1.2 JO41_10680 PF04542 Sigma-70 region 2 JO41_10680 PF04545 Sigma-70, region 4 JO41_10715 PF00905 Penicillin binding protein transpeptidase domain JO41_10715 PF03717 Penicillin-binding Protein dimerisation domain JO41_10720 PF01098 Cell cycle protein JO41_10730 PF05191 Adenylate kinase, active site lid JO41_10735 PF01926 50S ribosome-binding GTPase JO41_10735 PF12631 MnmE helical domain JO41_10735 PF10396 GTP-binding protein TrmE N-terminus JO41_10740 PF00005 ABC transporter JO41_10760 PF04607 Region found in RelA / SpoT proteins JO41_10765 PF00005 ABC transporter JO41_10765 PF00664 ABC transporter transmembrane region JO41_10775 PF00664 ABC transporter transmembrane region JO41_10775 PF00005 ABC transporter JO41_10775 PF04954 Siderophore-interacting protein JO41_10775 PF08021 Siderophore-interacting FAD-binding domain JO41_10790 PF00440 Bacterial regulatory proteins, tetR family JO41_10790 PF16295 Tetracyclin repressor-like, C-terminal domain JO41_10820 PF00375 Sodium:dicarboxylate symporter family JO41_10840 PF03477 ATP cone domain JO41_10850 PF01790 Prolipoprotein diacylglyceryl transferase JO41_10860 PF10609 NUBPL iron-transfer P-loop NTPase JO41_10870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JO41_10870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO41_10875 PF01145 SPFH domain / Band 7 family JO41_10880 PF01145 SPFH domain / Band 7 family JO41_10890 PF03062 MBOAT, membrane-bound O-acyltransferase family JO41_10905 PF00398 Ribosomal RNA adenine dimethylase JO41_10915 PF00849 RNA pseudouridylate synthase JO41_10920 PF00849 RNA pseudouridylate synthase JO41_10930 PF12849 PBP superfamily domain JO41_10960 PF00211 Adenylate and Guanylate cyclase catalytic domain JO41_10960 PF02743 Cache domain JO41_10960 PF00672 HAMP domain JO41_10965 PF00664 ABC transporter transmembrane region JO41_10965 PF00005 ABC transporter JO41_10970 PF00005 ABC transporter JO41_10970 PF00664 ABC transporter transmembrane region JO41_10975 PF00005 ABC transporter JO41_10975 PF03459 TOBE domain JO41_10975 PF17912 MalK OB fold domain JO41_11000 PF01367 5'-3' exonuclease, C-terminal SAM fold JO41_11000 PF00476 DNA polymerase family A JO41_11000 PF01612 3'-5' exonuclease JO41_11000 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JO41_11005 PF06418 CTP synthase N-terminus JO41_11005 PF00117 Glutamine amidotransferase class-I JO41_11015 PF01145 SPFH domain / Band 7 family JO41_11040 PF01725 Ham1 family JO41_11045 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO41_11050 PF00005 ABC transporter JO41_11055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11055 PF02743 Cache domain JO41_11055 PF00672 HAMP domain JO41_11060 PF13193 AMP-binding enzyme C-terminal domain JO41_11060 PF00501 AMP-binding enzyme JO41_11065 PF00877 NlpC/P60 family JO41_11070 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JO41_11070 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JO41_11075 PF00881 Nitroreductase family JO41_11100 PF01351 Ribonuclease HII JO41_11140 PF02463 RecF/RecN/SMC N terminal domain JO41_11145 PF01513 ATP-NAD kinase JO41_11150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO41_11155 PF01584 CheW-like domain JO41_11165 PF07009 NusG domain II JO41_11175 PF03781 Sulfatase-modifying factor enzyme 1 JO41_11180 PF03129 Anticodon binding domain JO41_11180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO41_11180 PF04073 Aminoacyl-tRNA editing domain JO41_11190 PF02545 Maf-like protein JO41_11195 PF00318 Ribosomal protein S2 JO41_11200 PF00889 Elongation factor TS JO41_11205 PF01765 Ribosome recycling factor JO41_11210 PF01255 Putative undecaprenyl diphosphate synthase JO41_11220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JO41_11220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JO41_11220 PF13288 DXP reductoisomerase C-terminal domain JO41_11225 PF17820 PDZ domain JO41_11225 PF02163 Peptidase family M50 JO41_11230 PF14353 CpXC protein JO41_11240 PF00440 Bacterial regulatory proteins, tetR family JO41_11250 PF17131 Outer membrane lipoprotein-sorting protein JO41_11270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11270 PF00672 HAMP domain JO41_11270 PF12729 Four helix bundle sensory module for signal transduction JO41_11275 PF00456 Transketolase, thiamine diphosphate binding domain JO41_11275 PF02779 Transketolase, pyrimidine binding domain JO41_11280 PF17863 AAA lid domain JO41_11280 PF07726 ATPase family associated with various cellular activities (AAA) JO41_11295 PF02824 TGS domain JO41_11295 PF04607 Region found in RelA / SpoT proteins JO41_11295 PF13291 ACT domain JO41_11300 PF17827 PrmC N-terminal domain JO41_11300 PF05175 Methyltransferase small domain JO41_11305 PF03462 PCRF domain JO41_11305 PF00472 RF-1 domain JO41_11310 PF12796 Ankyrin repeats (3 copies) JO41_11315 PF00999 Sodium/hydrogen exchanger family JO41_11320 PF16258 Domain of unknown function (DUF4912) JO41_11325 PF09210 Domain of unknown function (DUF1957) JO41_11325 PF03065 Glycosyl hydrolase family 57 JO41_11330 PF00300 Histidine phosphatase superfamily (branch 1) JO41_11335 PF17760 UvrA interaction domain JO41_11335 PF00005 ABC transporter JO41_11335 PF17755 UvrA DNA-binding domain JO41_11345 PF00005 ABC transporter JO41_11350 PF03577 Peptidase family C69 JO41_11355 PF02719 Polysaccharide biosynthesis protein JO41_11365 PF00672 HAMP domain JO41_11365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_11365 PF02743 Cache domain JO41_11375 PF03313 Serine dehydratase alpha chain JO41_11380 PF03315 Serine dehydratase beta chain JO41_11380 PF01842 ACT domain JO41_11385 PF00121 Triosephosphate isomerase JO41_11400 PF09383 NIL domain JO41_11400 PF00005 ABC transporter JO41_11405 PF00528 Binding-protein-dependent transport system inner membrane component JO41_11415 PF07687 Peptidase dimerisation domain JO41_11415 PF01546 Peptidase family M20/M25/M40 JO41_11450 PF16314 Domain of unknown function (DUF4954) JO41_11465 PF00005 ABC transporter JO41_11465 PF02687 FtsX-like permease family JO41_11465 PF12704 MacB-like periplasmic core domain JO41_11470 PF00005 ABC transporter JO41_11480 PF14842 FliG N-terminal domain JO41_11480 PF14841 FliG middle domain JO41_11480 PF01706 FliG C-terminal domain JO41_11485 PF05193 Peptidase M16 inactive domain JO41_11485 PF08367 Peptidase M16C associated JO41_11485 PF00675 Insulinase (Peptidase family M16) JO41_11490 PF01751 Toprim domain JO41_11490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO41_11490 PF00204 DNA gyrase B JO41_11490 PF00986 DNA gyrase B subunit, carboxyl terminus JO41_11495 PF01546 Peptidase family M20/M25/M40 JO41_11495 PF07687 Peptidase dimerisation domain JO41_11505 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JO41_11505 PF17962 Bacterial macroglobulin domain 6 JO41_11505 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JO41_11505 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JO41_11505 PF00207 Alpha-2-macroglobulin family JO41_11505 PF07703 Alpha-2-macroglobulin bait region domain JO41_11505 PF01835 MG2 domain JO41_11530 PF02580 D-Tyr-tRNA(Tyr) deacylase JO41_11535 PF01195 Peptidyl-tRNA hydrolase JO41_11540 PF00154 recA bacterial DNA recombination protein JO41_11550 PF00005 ABC transporter JO41_11570 PF00814 Glycoprotease family JO41_11610 PF16450 Proteasomal ATPase OB C-terminal domain JO41_11610 PF00004 ATPase family associated with various cellular activities (AAA) JO41_11610 PF17758 Proteasomal ATPase OB N-terminal domain JO41_11625 PF00005 ABC transporter JO41_11625 PF00664 ABC transporter transmembrane region JO41_11645 PF00005 ABC transporter JO41_11650 PF00375 Sodium:dicarboxylate symporter family JO41_11655 PF03313 Serine dehydratase alpha chain JO41_11660 PF01979 Amidohydrolase family JO41_11675 PF01032 FecCD transport family JO41_11690 PF00005 ABC transporter JO41_11690 PF00664 ABC transporter transmembrane region JO41_11700 PF04011 LemA family JO41_11705 PF00440 Bacterial regulatory proteins, tetR family JO41_11705 PF08361 MAATS-type transcriptional repressor, C-terminal region JO41_11715 PF00005 ABC transporter JO41_11715 PF00664 ABC transporter transmembrane region JO41_11720 PF00005 ABC transporter JO41_11720 PF00664 ABC transporter transmembrane region JO41_11725 PF00392 Bacterial regulatory proteins, gntR family JO41_11725 PF07729 FCD domain JO41_11730 PF01330 RuvA N terminal domain JO41_11735 PF09186 Domain of unknown function (DUF1949) JO41_11735 PF01205 Uncharacterized protein family UPF0029 JO41_11740 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JO41_11740 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JO41_11745 PF04101 Glycosyltransferase family 28 C-terminal domain JO41_11745 PF03033 Glycosyltransferase family 28 N-terminal domain JO41_11755 PF09115 DNA polymerase III, delta subunit, C terminal JO41_11770 PF00772 DnaB-like helicase N terminal domain JO41_11770 PF03796 DnaB-like helicase C terminal domain JO41_11775 PF01281 Ribosomal protein L9, N-terminal domain JO41_11775 PF03948 Ribosomal protein L9, C-terminal domain JO41_11780 PF01084 Ribosomal protein S18 JO41_11785 PF00436 Single-strand binding protein family JO41_11790 PF01250 Ribosomal protein S6 JO41_11795 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO41_11795 PF07683 Cobalamin synthesis protein cobW C-terminal domain JO41_11800 PF01554 MatE JO41_11810 PF00672 HAMP domain JO41_11810 PF00211 Adenylate and Guanylate cyclase catalytic domain JO41_11815 PF02401 LytB protein JO41_11820 PF00266 Aminotransferase class-V JO41_11825 PF01761 3-dehydroquinate synthase JO41_11835 PF17862 AAA+ lid domain JO41_11835 PF00004 ATPase family associated with various cellular activities (AAA) JO41_11835 PF01434 Peptidase family M41 JO41_11845 PF01740 STAS domain JO41_11875 PF01545 Cation efflux family JO41_11875 PF16916 Dimerisation domain of Zinc Transporter JO41_11880 PF01212 Beta-eliminating lyase JO41_11885 PF02742 Iron dependent repressor, metal binding and dimerisation domain JO41_11885 PF01325 Iron dependent repressor, N-terminal DNA binding domain JO41_11890 PF01297 Zinc-uptake complex component A periplasmic JO41_11895 PF00005 ABC transporter JO41_11905 PF00950 ABC 3 transport family JO41_11915 PF00950 ABC 3 transport family JO41_11920 PF04463 Protein of unknown function (DUF523) JO41_11930 PF07724 AAA domain (Cdc48 subfamily) JO41_11930 PF10431 C-terminal, D2-small domain, of ClpB protein JO41_11930 PF00004 ATPase family associated with various cellular activities (AAA) JO41_11930 PF17871 AAA lid domain JO41_11930 PF02861 Clp amino terminal domain, pathogenicity island component JO41_11935 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain JO41_11945 PF02954 Bacterial regulatory protein, Fis family JO41_11945 PF00989 PAS fold JO41_11945 PF00158 Sigma-54 interaction domain JO41_11955 PF00989 PAS fold JO41_11955 PF00512 His Kinase A (phospho-acceptor) domain JO41_11955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO41_11960 PF00072 Response regulator receiver domain JO41_11960 PF00158 Sigma-54 interaction domain JO41_11960 PF02954 Bacterial regulatory protein, Fis family JO41_12000 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JO41_12000 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JO41_12005 PF07977 FabA-like domain JO41_12010 PF01106 NifU-like domain JO41_12025 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal JO41_12025 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal JO41_12040 PF00465 Iron-containing alcohol dehydrogenase JO41_12055 PF03372 Endonuclease/Exonuclease/phosphatase family JO41_12065 PF04304 Protein of unknown function (DUF454) JO41_12070 PF00005 ABC transporter JO41_12080 PF00403 Heavy-metal-associated domain JO41_12100 PF01979 Amidohydrolase family JO41_12115 PF00005 ABC transporter JO41_12140 PF02527 rRNA small subunit methyltransferase G JO41_12145 PF02237 Biotin protein ligase C terminal domain JO41_12145 PF03099 Biotin/lipoate A/B protein ligase family JO41_12145 PF08279 HTH domain JO41_12150 PF00929 Exonuclease JO41_12155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO41_12155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO41_12155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO41_12155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO41_12165 PF17092 Penicillin-binding protein OB-like domain JO41_12165 PF00912 Transglycosylase JO41_12165 PF00905 Penicillin binding protein transpeptidase domain JO41_12195 PF00209 Sodium:neurotransmitter symporter family JO41_12200 PF01593 Flavin containing amine oxidoreductase JO41_12215 PF06470 SMC proteins Flexible Hinge Domain JO41_12215 PF02463 RecF/RecN/SMC N terminal domain JO41_12225 PF13525 Outer membrane lipoprotein JO41_12230 PF03880 DbpA RNA binding domain JO41_12240 PF01078 Magnesium chelatase, subunit ChlI JO41_12240 PF13335 Magnesium chelatase, subunit ChlI C-terminal JO41_12245 PF06832 Penicillin-Binding Protein C-terminus Family JO41_12245 PF00912 Transglycosylase JO41_12245 PF00905 Penicillin binding protein transpeptidase domain JO41_12250 PF13635 Domain of unknown function (DUF4143) JO41_12250 PF13173 AAA domain JO41_12485 PF00672 HAMP domain JO41_12485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO41_12485 PF02743 Cache domain JO41_12490 PF03764 Elongation factor G, domain IV JO41_12490 PF00679 Elongation factor G C-terminus JO41_12490 PF14492 Elongation Factor G, domain II JO41_12490 PF03144 Elongation factor Tu domain 2 JO41_12490 PF00009 Elongation factor Tu GTP binding domain JO41_12495 PF01728 FtsJ-like methyltransferase JO41_12510 PF00005 ABC transporter JO41_12515 PF02687 FtsX-like permease family JO41_12515 PF12704 MacB-like periplasmic core domain JO41_12525 PF00448 SRP54-type protein, GTPase domain JO41_12525 PF02881 SRP54-type protein, helical bundle domain JO41_12535 PF00472 RF-1 domain JO41_12535 PF03462 PCRF domain JO41_12550 PF00005 ABC transporter JO41_12555 PF02632 BioY family JO41_12565 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO41_12565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO41_12570 PF02557 D-alanyl-D-alanine carboxypeptidase JO41_12595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO41_12600 PF00528 Binding-protein-dependent transport system inner membrane component JO41_12605 PF00528 Binding-protein-dependent transport system inner membrane component JO41_12610 PF00005 ABC transporter JO41_12610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO41_12615 PF00005 ABC transporter JO41_12615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO41_12625 PF00155 Aminotransferase class I and II JO41_12630 PF01037 Lrp/AsnC ligand binding domain JO41_12640 PF01416 tRNA pseudouridine synthase JO41_12645 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) JO41_12650 PF01648 4'-phosphopantetheinyl transferase superfamily JO41_12660 PF02457 DisA bacterial checkpoint controller nucleotide-binding JO41_12665 PF00809 Pterin binding enzyme