JO41_00075	SM00327	von Willebrand factor (vWF) type A domain
JO41_00105	SM00849	Metallo-beta-lactamase superfamily
JO41_00120	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO41_00120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_00125	SM00845	GatB domain
JO41_00140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_00160	SM00028	Tetratricopeptide repeats
JO41_00295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_00295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_00325	SM00881	CoA binding domain
JO41_00350	SM00487	DEAD-like helicases superfamily
JO41_00350	SM00490	helicase superfamily c-terminal domain
JO41_00355	SM00986	Uracil DNA glycosylase superfamily
JO41_00355	SM00987	UreE urease accessory protein, C-terminal domain 
JO41_00420	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_00475	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO41_00495	SM00382	ATPases associated with a variety of cellular activities
JO41_00510	SM00829	Enoylreductase
JO41_00515	SM00833	Cobalamin synthesis protein cobW C-terminal domain
JO41_00530	SM00357	Cold shock protein domain
JO41_00530	SM00382	ATPases associated with a variety of cellular activities
JO41_00530	SM00959	Rho termination factor, N-terminal domain
JO41_00550	SM00411	bacterial (prokaryotic) histone like domain
JO41_00560	SM00028	Tetratricopeptide repeats
JO41_00560	SM00954	Region found in RelA / SpoT proteins
JO41_00575	SM00646	JO41_00575
JO41_00605	SM00909	Sporulation and spore germination
JO41_00615	SM00448	cheY-homologous receiver domain
JO41_00625	SM00138	Methyltransferase, chemotaxis proteins 
JO41_00625	SM00260	Two component signalling adaptor domain
JO41_00630	SM00073	Histidine Phosphotransfer domain
JO41_00630	SM00260	Two component signalling adaptor domain
JO41_00630	SM00387	Histidine kinase-like ATPases
JO41_00630	SM01231	JO41_00630
JO41_00695	SM00257	Lysin motif
JO41_00725	SM01359	JO41_00725
JO41_00725	SM01360	JO41_00725
JO41_00785	SM00382	ATPases associated with a variety of cellular activities
JO41_00820	SM00487	DEAD-like helicases superfamily
JO41_00820	SM00490	helicase superfamily c-terminal domain
JO41_00830	SM00028	Tetratricopeptide repeats
JO41_00850	SM00382	ATPases associated with a variety of cellular activities
JO41_00890	SM00155	Phospholipase D. Active site motifs.
JO41_00905	SM00382	ATPases associated with a variety of cellular activities
JO41_00990	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_01025	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO41_01075	SM00530	Helix-turn-helix XRE-family like proteins 
JO41_01105	SM00873	B3/4 domain
JO41_01180	SM00842	Cell division protein FtsA
JO41_01185	SM00864	Tubulin/FtsZ family, GTPase domain
JO41_01185	SM00865	Tubulin/FtsZ family, C-terminal domain
JO41_01210	SM00363	S4 RNA-binding domain
JO41_01210	SM01390	JO41_01210
JO41_01235	SM00387	Histidine kinase-like ATPases
JO41_01235	SM00433	TopoisomeraseII
JO41_01240	SM00434	DNA Topoisomerase IV
JO41_01245	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
JO41_01255	SM00834	Putative regulatory protein
JO41_01285	SM00966	SpoVT / AbrB like domain 
JO41_01325	SM00382	ATPases associated with a variety of cellular activities
JO41_01325	SM01086	C-terminal, D2-small domain, of ClpB protein
JO41_01360	SM00382	ATPases associated with a variety of cellular activities
JO41_01390	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_01395	SM00358	Double-stranded RNA binding motif
JO41_01395	SM00535	Ribonuclease III family
JO41_01450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_01480	SM00849	Metallo-beta-lactamase superfamily
JO41_01550	SM00382	ATPases associated with a variety of cellular activities
JO41_01600	SM00028	Tetratricopeptide repeats
JO41_01615	SM00642	Alpha-amylase domain
JO41_01675	SM00465	GIY-YIG type nucleases (URI domain)
JO41_01680	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO41_01700	SM00981	JO41_01700
JO41_01750	SM00292	breast cancer carboxy-terminal domain
JO41_01750	SM00532	Ligase N family
JO41_01755	SM00062	Bacterial periplasmic substrate-binding proteins
JO41_01760	SM00062	Bacterial periplasmic substrate-binding proteins
JO41_01770	SM01007	Class II Aldolase and Adducin N-terminal domain
JO41_01785	SM00663	RNA polymerase I subunit A N-terminus
JO41_01810	SM00649	Ribosomal protein L11/L12
JO41_01815	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
JO41_01890	SM00342	helix_turn_helix, arabinose operon control protein
JO41_01905	SM00382	ATPases associated with a variety of cellular activities
JO41_01945	SM00382	ATPases associated with a variety of cellular activities
JO41_01985	SM00487	DEAD-like helicases superfamily
JO41_01985	SM00490	helicase superfamily c-terminal domain
JO41_02040	SM00470	ParB-like nuclease domain
JO41_02050	SM00382	ATPases associated with a variety of cellular activities
JO41_02145	SM00487	DEAD-like helicases superfamily
JO41_02145	SM00490	helicase superfamily c-terminal domain
JO41_02195	SM00635	Bacterial Ig-like domain 2
JO41_02225	SM00382	ATPases associated with a variety of cellular activities
JO41_02280	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
JO41_02280	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
JO41_02280	SM00493	JO41_02280
JO41_02320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
JO41_02320	SM00534	ATPase domain of DNA mismatch repair MUTS family
JO41_02325	SM00935	Outer membrane protein (OmpH-like)
JO41_02380	SM00710	Parallel beta-helix repeats
JO41_02385	SM00529	Helix-turn-helix diphteria tox regulatory element
JO41_02420	SM00382	ATPases associated with a variety of cellular activities
JO41_02485	SM00382	ATPases associated with a variety of cellular activities
JO41_02540	SM00382	ATPases associated with a variety of cellular activities
JO41_02555	SM00382	ATPases associated with a variety of cellular activities
JO41_02660	SM00267	diguanylate cyclase
JO41_02665	SM00838	Elongation factor G C-terminus
JO41_02665	SM00889	Elongation factor G, domain IV
JO41_02685	SM00316	Ribosomal protein S1-like RNA-binding domain
JO41_02690	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO41_02690	SM00382	ATPases associated with a variety of cellular activities
JO41_02695	SM00028	Tetratricopeptide repeats
JO41_02705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_02705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_02710	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_02715	SM00849	Metallo-beta-lactamase superfamily
JO41_02755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_02875	SM00382	ATPases associated with a variety of cellular activities
JO41_02895	SM00487	DEAD-like helicases superfamily
JO41_02895	SM00490	helicase superfamily c-terminal domain
JO41_02950	SM00382	ATPases associated with a variety of cellular activities
JO41_03005	SM00322	K homology RNA-binding domain
JO41_03005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_03020	SM00470	ParB-like nuclease domain
JO41_03030	SM00382	ATPases associated with a variety of cellular activities
JO41_03030	SM00464	Found in ATP-dependent protease La (LON)
JO41_03105	SM00984	UDP binding domain
JO41_03165	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
JO41_03220	SM00028	Tetratricopeptide repeats
JO41_03240	SM00354	helix_turn _helix lactose operon repressor
JO41_03265	SM00382	ATPases associated with a variety of cellular activities
JO41_03280	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
JO41_03295	SM00116	Domain in cystathionine beta-synthase and other proteins.
JO41_03295	SM00924	MgtE intracellular N domain
JO41_03385	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_03390	SM00642	Alpha-amylase domain
JO41_03400	SM00562	JO41_03400
JO41_03405	SM00382	ATPases associated with a variety of cellular activities
JO41_03405	SM00962	SRP54-type protein, GTPase domain
JO41_03405	SM00963	SRP54-type protein, helical bundle domain
JO41_03430	SM01323	JO41_03430
JO41_03445	SM00393	Putative single-stranded nucleic acids-binding domain
JO41_03445	SM01245	JO41_03445
JO41_03470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_03470	SM00331	Sigma factor PP2C-like phosphatases
JO41_03520	SM00360	RNA recognition motif
JO41_03580	SM00487	DEAD-like helicases superfamily
JO41_03580	SM00490	helicase superfamily c-terminal domain
JO41_03580	SM00847	Helicase associated domain (HA2)  Add an annotation
JO41_03645	SM00028	Tetratricopeptide repeats
JO41_03680	SM00883	Chaperonin 10 Kd subunit
JO41_03700	SM00855	Phosphoglycerate mutase family
JO41_03765	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_03770	SM01058	CarD-like/TRCF domain
JO41_03805	SM00642	Alpha-amylase domain
JO41_03835	SM00825	Beta-ketoacyl synthase
JO41_03840	SM00822	JO41_03840
JO41_03845	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
JO41_03855	SM00487	DEAD-like helicases superfamily
JO41_03855	SM00490	helicase superfamily c-terminal domain
JO41_03895	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO41_03895	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_03955	SM00382	ATPases associated with a variety of cellular activities
JO41_03975	SM00382	ATPases associated with a variety of cellular activities
JO41_04065	SM00382	ATPases associated with a variety of cellular activities
JO41_04070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_04110	SM00382	ATPases associated with a variety of cellular activities
JO41_04160	SM01091	Transporter associated domain
JO41_04185	SM00382	ATPases associated with a variety of cellular activities
JO41_04185	SM01086	C-terminal, D2-small domain, of ClpB protein
JO41_04230	SM00530	Helix-turn-helix XRE-family like proteins 
JO41_04265	SM00845	GatB domain
JO41_04265	SM00870	JO41_04265
JO41_04295	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO41_04295	SM00245	tail specific protease
JO41_04355	SM00662	RNA polymerases D
JO41_04415	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
JO41_04420	SM01374	JO41_04420
JO41_04440	SM00322	K homology RNA-binding domain
JO41_04455	SM01382	JO41_04455
JO41_04455	SM01383	JO41_04455
JO41_04475	SM01403	JO41_04475
JO41_04500	SM00873	B3/4 domain
JO41_04500	SM00874	tRNA synthetase B5 domain
JO41_04510	SM00257	Lysin motif
JO41_04525	SM00382	ATPases associated with a variety of cellular activities
JO41_04525	SM00843	JO41_04525
JO41_04535	SM00028	Tetratricopeptide repeats
JO41_04615	SM00382	ATPases associated with a variety of cellular activities
JO41_04655	SM00327	von Willebrand factor (vWF) type A domain
JO41_04675	SM00382	ATPases associated with a variety of cellular activities
JO41_04675	SM00760	Bacterial dnaA protein helix-turn-helix domain
JO41_04685	SM00382	ATPases associated with a variety of cellular activities
JO41_04695	SM00382	ATPases associated with a variety of cellular activities
JO41_04700	SM01324	JO41_04700
JO41_04785	SM00382	ATPases associated with a variety of cellular activities
JO41_04810	SM00028	Tetratricopeptide repeats
JO41_04810	SM00671	Sel1-like repeats.
JO41_04815	SM00028	Tetratricopeptide repeats
JO41_04820	SM00028	Tetratricopeptide repeats
JO41_04840	SM00382	ATPases associated with a variety of cellular activities
JO41_04910	SM00382	ATPases associated with a variety of cellular activities
JO41_04940	SM00382	ATPases associated with a variety of cellular activities
JO41_04945	SM00382	ATPases associated with a variety of cellular activities
JO41_04950	SM00382	ATPases associated with a variety of cellular activities
JO41_04970	SM00382	ATPases associated with a variety of cellular activities
JO41_04990	SM00060	Fibronectin type 3 domain
JO41_05005	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
JO41_05030	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
JO41_05035	SM00387	Histidine kinase-like ATPases
JO41_05045	SM00316	Ribosomal protein S1-like RNA-binding domain
JO41_05045	SM00732	Likely ribonuclease with RNase H fold.
JO41_05115	SM00710	Parallel beta-helix repeats
JO41_05170	SM00327	von Willebrand factor (vWF) type A domain
JO41_05175	SM00327	von Willebrand factor (vWF) type A domain
JO41_05185	SM00287	Bacterial SH3 domain homologues
JO41_05230	SM00382	ATPases associated with a variety of cellular activities
JO41_05250	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_05250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_05255	SM00450	Rhodanese Homology Domain
JO41_05265	SM00271	DnaJ molecular chaperone homology domain
JO41_05285	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_05285	SM00267	diguanylate cyclase
JO41_05290	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_05290	SM00267	diguanylate cyclase
JO41_05415	SM00480	DNA polymerase III beta subunit
JO41_05440	SM00841	Elongation factor P, C-terminal
JO41_05440	SM01185	JO41_05440
JO41_05495	SM00257	Lysin motif
JO41_05505	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO41_05525	SM00849	Metallo-beta-lactamase superfamily
JO41_05555	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
JO41_05560	SM00220	Serine/Threonine protein kinases, catalytic domain
JO41_05565	SM00382	ATPases associated with a variety of cellular activities
JO41_05600	SM00563	Phosphate acyltransferases
JO41_05640	SM00873	B3/4 domain
JO41_05675	SM00382	ATPases associated with a variety of cellular activities
JO41_05695	SM01240	JO41_05695
JO41_05710	SM00382	ATPases associated with a variety of cellular activities
JO41_05735	SM00919	Malic enzyme, NAD binding domain
JO41_05735	SM01274	JO41_05735
JO41_05750	SM00382	ATPases associated with a variety of cellular activities
JO41_05830	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_05835	SM00257	Lysin motif
JO41_05865	SM01400	JO41_05865
JO41_05940	SM00028	Tetratricopeptide repeats
JO41_05980	SM00060	Fibronectin type 3 domain
JO41_05985	SM00028	Tetratricopeptide repeats
JO41_05990	SM01133	JO41_05990
JO41_06000	SM01228	JO41_06000
JO41_06010	SM00382	ATPases associated with a variety of cellular activities
JO41_06015	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_06015	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_06050	SM00028	Tetratricopeptide repeats
JO41_06065	SM00838	Elongation factor G C-terminus
JO41_06065	SM00889	Elongation factor G, domain IV
JO41_06190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_06190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_06200	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_06200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_06210	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_06210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_06265	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
JO41_06285	SM00448	cheY-homologous receiver domain
JO41_06285	SM00862	Transcriptional regulatory protein, C terminal
JO41_06290	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_06290	SM00387	Histidine kinase-like ATPases
JO41_06290	SM00388	His Kinase A (phosphoacceptor) domain
JO41_06300	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO41_06305	SM00382	ATPases associated with a variety of cellular activities
JO41_06305	SM00930	JO41_06305
JO41_06315	SM01133	JO41_06315
JO41_06335	SM00382	ATPases associated with a variety of cellular activities
JO41_06370	SM00487	DEAD-like helicases superfamily
JO41_06370	SM00490	helicase superfamily c-terminal domain
JO41_06435	SM00919	Malic enzyme, NAD binding domain
JO41_06435	SM01274	JO41_06435
JO41_06500	SM00463	Small MutS-related domain
JO41_06530	SM00481	DNA polymerase alpha chain like domain
JO41_06535	SM00028	Tetratricopeptide repeats
JO41_06540	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_06545	SM00487	DEAD-like helicases superfamily
JO41_06545	SM00490	helicase superfamily c-terminal domain
JO41_06545	SM00982	JO41_06545
JO41_06545	SM01058	CarD-like/TRCF domain
JO41_06720	SM00878	Biotin carboxylase C-terminal domain
JO41_06745	SM00900	JO41_06745
JO41_06805	SM00487	DEAD-like helicases superfamily
JO41_06845	SM00957	SecA DEAD-like domain
JO41_06845	SM00958	SecA preprotein cross-linking domain
JO41_06865	SM00966	SpoVT / AbrB like domain 
JO41_06870	SM00670	Large family of predicted nucleotide-binding domains
JO41_06975	SM00853	MutL C terminal dimerisation domain
JO41_06975	SM01340	JO41_06975
JO41_06990	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_06995	SM00463	Small MutS-related domain
JO41_06995	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
JO41_06995	SM00534	ATPase domain of DNA mismatch repair MUTS family
JO41_07085	SM00764	Citrate lyase ligase C-terminal domain
JO41_07120	SM00422	helix_turn_helix, mercury resistance
JO41_07135	SM01245	JO41_07135
JO41_07165	SM00421	helix_turn_helix, Lux Regulon
JO41_07225	SM00740	JO41_07225
JO41_07395	SM00028	Tetratricopeptide repeats
JO41_07535	SM00028	Tetratricopeptide repeats
JO41_07550	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO41_07555	SM00382	ATPases associated with a variety of cellular activities
JO41_07585	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
JO41_07590	SM01092	CO dehydrogenase flavoprotein C-terminal domain
JO41_07605	SM00342	helix_turn_helix, arabinose operon control protein
JO41_07605	SM00871	Bacterial transcription activator, effector binding domain
JO41_07620	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO41_07625	SM00028	Tetratricopeptide repeats
JO41_07635	SM00729	Elongator protein 3, MiaB family, Radical SAM
JO41_07655	SM00488	JO41_07655
JO41_07655	SM00491	JO41_07655
JO41_07660	SM00563	Phosphate acyltransferases
JO41_07675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_07675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_07755	SM00861	Transketolase, pyrimidine binding domain
JO41_07790	SM00829	Enoylreductase
JO41_07875	SM00382	ATPases associated with a variety of cellular activities
JO41_07895	SM00347	helix_turn_helix multiple antibiotic resistance protein
JO41_07920	SM00890	Domain of unknown function
JO41_07925	SM00487	DEAD-like helicases superfamily
JO41_07925	SM00490	helicase superfamily c-terminal domain
JO41_07935	SM00434	DNA Topoisomerase IV
JO41_07960	SM00710	Parallel beta-helix repeats
JO41_07975	SM00271	DnaJ molecular chaperone homology domain
JO41_08000	SM00487	DEAD-like helicases superfamily
JO41_08000	SM00490	helicase superfamily c-terminal domain
JO41_08025	SM00478	endonuclease III
JO41_08060	SM00478	endonuclease III
JO41_08425	SM00382	ATPases associated with a variety of cellular activities
JO41_08425	SM00994	ClpX C4-type zinc finger
JO41_08425	SM01086	C-terminal, D2-small domain, of ClpB protein
JO41_08465	SM00873	B3/4 domain
JO41_08475	SM00836	DALR anticodon binding domain
JO41_08475	SM01016	Arginyl tRNA synthetase N terminal dom
JO41_08655	SM00382	ATPases associated with a variety of cellular activities
JO41_08755	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_08755	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_08765	SM00028	Tetratricopeptide repeats
JO41_08805	SM00893	Electron transfer flavoprotein domain
JO41_08810	SM00893	Electron transfer flavoprotein domain
JO41_08870	SM00487	DEAD-like helicases superfamily
JO41_08870	SM00490	helicase superfamily c-terminal domain
JO41_08900	SM00382	ATPases associated with a variety of cellular activities
JO41_08910	SM00419	helix_turn_helix, cAMP Regulatory protein
JO41_08930	SM00740	JO41_08930
JO41_08960	SM01192	JO41_08960
JO41_08960	SM01193	JO41_08960
JO41_09035	SM00316	Ribosomal protein S1-like RNA-binding domain
JO41_09060	SM01387	JO41_09060
JO41_09065	SM00316	Ribosomal protein S1-like RNA-binding domain
JO41_09065	SM00322	K homology RNA-binding domain
JO41_09085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_09085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_09090	SM01091	Transporter associated domain
JO41_09105	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_09105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_09130	SM00382	ATPases associated with a variety of cellular activities
JO41_09175	SM00382	ATPases associated with a variety of cellular activities
JO41_09250	SM00642	Alpha-amylase domain
JO41_09260	SM00642	Alpha-amylase domain
JO41_09295	SM00244	prohibitin homologues
JO41_09330	SM00382	ATPases associated with a variety of cellular activities
JO41_09335	SM00382	ATPases associated with a variety of cellular activities
JO41_09400	SM00506	Appr-1"-p processing enzyme
JO41_09505	SM00382	ATPases associated with a variety of cellular activities
JO41_09505	SM00962	SRP54-type protein, GTPase domain
JO41_09530	SM00955	JO41_09530
JO41_09540	SM00028	Tetratricopeptide repeats
JO41_09550	SM00481	DNA polymerase alpha chain like domain
JO41_09565	SM00382	ATPases associated with a variety of cellular activities
JO41_09625	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
JO41_09625	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
JO41_09625	SM00493	JO41_09625
JO41_09635	SM00028	Tetratricopeptide repeats
JO41_09655	SM01005	Alanine racemase, C-terminal domain
JO41_09685	SM00382	ATPases associated with a variety of cellular activities
JO41_09690	SM00900	JO41_09690
JO41_09700	SM00382	ATPases associated with a variety of cellular activities
JO41_09740	SM00855	Phosphoglycerate mutase family
JO41_09765	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JO41_09770	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_09770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_09780	SM00341	Helicase and RNase D C-terminal
JO41_09780	SM00487	DEAD-like helicases superfamily
JO41_09780	SM00490	helicase superfamily c-terminal domain
JO41_09780	SM00956	JO41_09780
JO41_09855	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_09855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_09885	SM00882	Coenzyme A transferase
JO41_09890	SM00882	Coenzyme A transferase
JO41_09960	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JO41_09970	SM00116	Domain in cystathionine beta-synthase and other proteins.
JO41_09970	SM01091	Transporter associated domain
JO41_09975	SM00028	Tetratricopeptide repeats
JO41_09995	SM00849	Metallo-beta-lactamase superfamily
JO41_10065	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JO41_10110	SM00138	Methyltransferase, chemotaxis proteins 
JO41_10115	SM00448	cheY-homologous receiver domain
JO41_10130	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_10160	SM00460	Transglutaminase/protease-like homologues
JO41_10170	SM00271	DnaJ molecular chaperone homology domain
JO41_10175	SM00316	Ribosomal protein S1-like RNA-binding domain
JO41_10210	SM00028	Tetratricopeptide repeats
JO41_10280	SM00849	Metallo-beta-lactamase superfamily
JO41_10280	SM01027	Beta-Casp domain
JO41_10290	SM00967	RNA 2'-O ribose methyltransferase substrate binding
JO41_10310	SM00327	von Willebrand factor (vWF) type A domain
JO41_10340	SM00382	ATPases associated with a variety of cellular activities
JO41_10355	SM00342	helix_turn_helix, arabinose operon control protein
JO41_10360	SM00342	helix_turn_helix, arabinose operon control protein
JO41_10370	SM00382	ATPases associated with a variety of cellular activities
JO41_10380	SM00382	ATPases associated with a variety of cellular activities
JO41_10410	SM00382	ATPases associated with a variety of cellular activities
JO41_10430	SM00382	ATPases associated with a variety of cellular activities
JO41_10515	SM00382	ATPases associated with a variety of cellular activities
JO41_10535	SM00493	JO41_10535
JO41_10570	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
JO41_10600	SM00257	Lysin motif
JO41_10605	SM00028	Tetratricopeptide repeats
JO41_10625	SM00938	Nitrogen regulatory protein P-II
JO41_10660	SM00849	Metallo-beta-lactamase superfamily
JO41_10675	SM00400	zinc finger
JO41_10675	SM00493	JO41_10675
JO41_10695	SM00028	Tetratricopeptide repeats
JO41_10740	SM00382	ATPases associated with a variety of cellular activities
JO41_10760	SM00954	Region found in RelA / SpoT proteins
JO41_10765	SM00382	ATPases associated with a variety of cellular activities
JO41_10775	SM00382	ATPases associated with a variety of cellular activities
JO41_10875	SM00244	prohibitin homologues
JO41_10880	SM00244	prohibitin homologues
JO41_10905	SM00650	Ribosomal RNA adenine dimethylases
JO41_10960	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO41_10960	SM01080	JO41_10960
JO41_10965	SM00382	ATPases associated with a variety of cellular activities
JO41_10970	SM00382	ATPases associated with a variety of cellular activities
JO41_10975	SM00382	ATPases associated with a variety of cellular activities
JO41_11000	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
JO41_11000	SM00474	3'-5' exonuclease
JO41_11000	SM00475	5'-3' exonuclease
JO41_11000	SM00482	DNA polymerase A domain
JO41_11015	SM00244	prohibitin homologues
JO41_11050	SM00382	ATPases associated with a variety of cellular activities
JO41_11055	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_11055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_11125	SM00100	Cyclic nucleotide-monophosphate binding domain
JO41_11140	SM00382	ATPases associated with a variety of cellular activities
JO41_11155	SM00260	Two component signalling adaptor domain
JO41_11225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JO41_11270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_11275	SM00861	Transketolase, pyrimidine binding domain
JO41_11295	SM00954	Region found in RelA / SpoT proteins
JO41_11305	SM00937	JO41_11305
JO41_11310	SM00248	ankyrin repeats
JO41_11330	SM00855	Phosphoglycerate mutase family
JO41_11345	SM00382	ATPases associated with a variety of cellular activities
JO41_11365	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_11365	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JO41_11400	SM00382	ATPases associated with a variety of cellular activities
JO41_11400	SM00930	JO41_11400
JO41_11470	SM00382	ATPases associated with a variety of cellular activities
JO41_11485	SM01264	JO41_11485
JO41_11490	SM00387	Histidine kinase-like ATPases
JO41_11490	SM00433	TopoisomeraseII
JO41_11505	SM01359	JO41_11505
JO41_11505	SM01360	JO41_11505
JO41_11540	SM00382	ATPases associated with a variety of cellular activities
JO41_11550	SM00382	ATPases associated with a variety of cellular activities
JO41_11610	SM00382	ATPases associated with a variety of cellular activities
JO41_11625	SM00382	ATPases associated with a variety of cellular activities
JO41_11630	SM00342	helix_turn_helix, arabinose operon control protein
JO41_11645	SM00382	ATPases associated with a variety of cellular activities
JO41_11690	SM00382	ATPases associated with a variety of cellular activities
JO41_11715	SM00382	ATPases associated with a variety of cellular activities
JO41_11720	SM00382	ATPases associated with a variety of cellular activities
JO41_11725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JO41_11725	SM00895	JO41_11725
JO41_11730	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JO41_11765	SM00854	Bacterial capsule synthesis protein PGA_cap
JO41_11770	SM00382	ATPases associated with a variety of cellular activities
JO41_11795	SM00833	Cobalamin synthesis protein cobW C-terminal domain
JO41_11810	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
JO41_11835	SM00382	ATPases associated with a variety of cellular activities
JO41_11840	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
JO41_11840	SM00331	Sigma factor PP2C-like phosphatases
JO41_11885	SM00529	Helix-turn-helix diphteria tox regulatory element
JO41_11895	SM00382	ATPases associated with a variety of cellular activities
JO41_11930	SM00382	ATPases associated with a variety of cellular activities
JO41_11930	SM01086	C-terminal, D2-small domain, of ClpB protein
JO41_11945	SM00382	ATPases associated with a variety of cellular activities
JO41_11950	SM01091	Transporter associated domain
JO41_11955	SM00091	PAS domain
JO41_11955	SM00387	Histidine kinase-like ATPases
JO41_11955	SM00388	His Kinase A (phosphoacceptor) domain
JO41_11960	SM00382	ATPases associated with a variety of cellular activities
JO41_11960	SM00448	cheY-homologous receiver domain
JO41_11990	SM00849	Metallo-beta-lactamase superfamily
JO41_12035	SM00899	JO41_12035
JO41_12045	SM00986	Uracil DNA glycosylase superfamily
JO41_12045	SM00987	UreE urease accessory protein, C-terminal domain 
JO41_12070	SM00382	ATPases associated with a variety of cellular activities
JO41_12115	SM00382	ATPases associated with a variety of cellular activities
JO41_12150	SM00479	JO41_12150
JO41_12185	SM00028	Tetratricopeptide repeats
JO41_12315	SM00028	Tetratricopeptide repeats
JO41_12350	SM00460	Transglutaminase/protease-like homologues
JO41_12365	SM00248	ankyrin repeats
JO41_12455	SM00248	ankyrin repeats
JO41_12485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
JO41_12490	SM00838	Elongation factor G C-terminus
JO41_12490	SM00889	Elongation factor G, domain IV
JO41_12510	SM00382	ATPases associated with a variety of cellular activities
JO41_12525	SM00382	ATPases associated with a variety of cellular activities
JO41_12525	SM00962	SRP54-type protein, GTPase domain
JO41_12535	SM00937	JO41_12535
JO41_12550	SM00382	ATPases associated with a variety of cellular activities
JO41_12565	SM00450	Rhodanese Homology Domain
JO41_12585	SM00331	Sigma factor PP2C-like phosphatases
JO41_12590	SM00331	Sigma factor PP2C-like phosphatases
JO41_12610	SM00382	ATPases associated with a variety of cellular activities
JO41_12615	SM00382	ATPases associated with a variety of cellular activities
JO41_12630	SM00344	helix_turn_helix ASNC type
JO41_12725	SM00487	DEAD-like helicases superfamily
