locus-tag class description Tresu_0001 PF00308 Bacterial dnaA protein Tresu_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tresu_0001 PF11638 DnaA N-terminal domain Tresu_0002 PF02767 DNA polymerase III beta subunit, central domain Tresu_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tresu_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tresu_0003 PF02463 RecF/RecN/SMC N terminal domain Tresu_0005 PF00468 Ribosomal protein L34 Tresu_0006 PF01809 Putative membrane protein insertion efficiency factor Tresu_0007 PF14849 YidC periplasmic domain Tresu_0007 PF02096 60Kd inner membrane protein Tresu_0008 PF01424 R3H domain Tresu_0008 PF14804 Jag N-terminus Tresu_0010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tresu_0013 PF00392 Bacterial regulatory proteins, gntR family Tresu_0013 PF00155 Aminotransferase class I and II Tresu_0014 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_0015 PF01985 CRS1 / YhbY (CRM) domain Tresu_0018 PF00117 Glutamine amidotransferase class-I Tresu_0018 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tresu_0019 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tresu_0019 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tresu_0019 PF02142 MGS-like domain Tresu_0020 PF00672 HAMP domain Tresu_0020 PF12729 Four helix bundle sensory module for signal transduction Tresu_0020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0024 PF00005 ABC transporter Tresu_0025 PF03853 YjeF-related protein N-terminus Tresu_0025 PF01256 Carbohydrate kinase Tresu_0026 PF03788 LrgA family Tresu_0027 PF04172 LrgB-like family Tresu_0028 PF00696 Amino acid kinase family Tresu_0029 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tresu_0029 PF03807 NADP oxidoreductase coenzyme F420-dependent Tresu_0031 PF01554 MatE Tresu_0032 PF13488 Glycine zipper Tresu_0032 PF00691 OmpA family Tresu_0033 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tresu_0034 PF03466 LysR substrate binding domain Tresu_0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_0035 PF01053 Cys/Met metabolism PLP-dependent enzyme Tresu_0036 PF01680 SOR/SNZ family Tresu_0037 PF01174 SNO glutamine amidotransferase family Tresu_0038 PF13091 PLD-like domain Tresu_0039 PF02769 AIR synthase related protein, C-terminal domain Tresu_0039 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Tresu_0039 PF00586 AIR synthase related protein, N-terminal domain Tresu_0041 PF03471 Transporter associated domain Tresu_0041 PF00571 CBS domain Tresu_0041 PF01595 Cyclin M transmembrane N-terminal domain Tresu_0042 PF03471 Transporter associated domain Tresu_0042 PF01595 Cyclin M transmembrane N-terminal domain Tresu_0042 PF00571 CBS domain Tresu_0044 PF00849 RNA pseudouridylate synthase Tresu_0045 PF00005 ABC transporter Tresu_0046 PF01032 FecCD transport family Tresu_0048 PF00156 Phosphoribosyl transferase domain Tresu_0049 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Tresu_0049 PF06165 Glycosyltransferase family 36 Tresu_0051 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0052 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0053 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Tresu_0053 PF04616 Glycosyl hydrolases family 43 Tresu_0054 PF00356 Bacterial regulatory proteins, lacI family Tresu_0055 PF02575 YbaB/EbfC DNA-binding family Tresu_0056 PF02132 RecR protein Tresu_0056 PF13662 Toprim domain Tresu_0059 PF01435 Peptidase family M48 Tresu_0059 PF16491 CAAX prenyl protease N-terminal, five membrane helices Tresu_0060 PF02527 rRNA small subunit methyltransferase G Tresu_0063 PF01430 Hsp33 protein Tresu_0064 PF17820 PDZ domain Tresu_0064 PF03572 Peptidase family S41 Tresu_0064 PF01471 Putative peptidoglycan binding domain Tresu_0065 PF04452 RNA methyltransferase Tresu_0067 PF13185 GAF domain Tresu_0067 PF02954 Bacterial regulatory protein, Fis family Tresu_0067 PF00158 Sigma-54 interaction domain Tresu_0068 PF00588 SpoU rRNA Methylase family Tresu_0070 PF00815 Histidinol dehydrogenase Tresu_0071 PF01327 Polypeptide deformylase Tresu_0072 PF02911 Formyl transferase, C-terminal domain Tresu_0072 PF00551 Formyl transferase Tresu_0074 PF00871 Acetokinase family Tresu_0076 PF00005 ABC transporter Tresu_0078 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tresu_0078 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tresu_0079 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Tresu_0079 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Tresu_0080 PF04055 Radical SAM superfamily Tresu_0080 PF06968 Biotin and Thiamin Synthesis associated domain Tresu_0081 PF02361 Cobalt transport protein Tresu_0082 PF00005 ABC transporter Tresu_0083 PF02632 BioY family Tresu_0086 PF03466 LysR substrate binding domain Tresu_0086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_0092 PF00892 EamA-like transporter family Tresu_0093 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tresu_0093 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tresu_0094 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tresu_0094 PF00175 Oxidoreductase NAD-binding domain Tresu_0097 PF02308 MgtC family Tresu_0101 PF05872 Bacterial protein of unknown function (DUF853) Tresu_0102 PF01554 MatE Tresu_0106 PF01548 Transposase Tresu_0106 PF02371 Transposase IS116/IS110/IS902 family Tresu_0110 PF00145 C-5 cytosine-specific DNA methylase Tresu_0111 PF13808 DDE_Tnp_1-associated Tresu_0111 PF01609 Transposase DDE domain Tresu_0118 PF00005 ABC transporter Tresu_0118 PF16326 ABC transporter C-terminal domain Tresu_0118 PF12848 ABC transporter Tresu_0119 PF02146 Sir2 family Tresu_0121 PF00186 Dihydrofolate reductase Tresu_0123 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_0123 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tresu_0123 PF00391 PEP-utilising enzyme, mobile domain Tresu_0124 PF01381 Helix-turn-helix Tresu_0124 PF06114 IrrE N-terminal-like domain Tresu_0124 PF09856 Predicted transcriptional regulator (DUF2083) Tresu_0129 PF00011 Hsp20/alpha crystallin family Tresu_0131 PF01048 Phosphorylase superfamily Tresu_0132 PF13537 Glutamine amidotransferase domain Tresu_0132 PF00733 Asparagine synthase Tresu_0134 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tresu_0134 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Tresu_0136 PF12169 DNA polymerase III subunits gamma and tau domain III Tresu_0138 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0140 PF00005 ABC transporter Tresu_0140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tresu_0141 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tresu_0141 PF00005 ABC transporter Tresu_0143 PF03477 ATP cone domain Tresu_0143 PF13597 Anaerobic ribonucleoside-triphosphate reductase Tresu_0145 PF00072 Response regulator receiver domain Tresu_0145 PF13426 PAS domain Tresu_0145 PF08448 PAS fold Tresu_0145 PF00512 His Kinase A (phospho-acceptor) domain Tresu_0145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0151 PF00035 Double-stranded RNA binding motif Tresu_0151 PF14622 Ribonuclease-III-like Tresu_0159 PF00501 AMP-binding enzyme Tresu_0159 PF13193 AMP-binding enzyme C-terminal domain Tresu_0160 PF00118 TCP-1/cpn60 chaperonin family Tresu_0161 PF01228 Glycine radical Tresu_0161 PF02901 Pyruvate formate lyase-like Tresu_0163 PF03372 Endonuclease/Exonuclease/phosphatase family Tresu_0166 PF04055 Radical SAM superfamily Tresu_0169 PF07687 Peptidase dimerisation domain Tresu_0169 PF01546 Peptidase family M20/M25/M40 Tresu_0170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tresu_0171 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0171 PF03129 Anticodon binding domain Tresu_0171 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0173 PF00877 NlpC/P60 family Tresu_0174 PF12241 Trans-2-enoyl-CoA reductase catalytic region Tresu_0174 PF07055 Enoyl reductase FAD binding domain Tresu_0174 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Tresu_0177 PF00356 Bacterial regulatory proteins, lacI family Tresu_0178 PF02677 Epoxyqueuosine reductase QueH Tresu_0182 PF01926 50S ribosome-binding GTPase Tresu_0182 PF12631 MnmE helical domain Tresu_0182 PF10396 GTP-binding protein TrmE N-terminus Tresu_0186 PF02811 PHP domain Tresu_0186 PF14579 Helix-hairpin-helix motif Tresu_0186 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tresu_0186 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tresu_0187 PF00027 Cyclic nucleotide-binding domain Tresu_0187 PF00520 Ion transport protein Tresu_0188 PF01613 Flavin reductase like domain Tresu_0189 PF01202 Shikimate kinase Tresu_0190 PF01734 Patatin-like phospholipase Tresu_0192 PF17674 HHH domain Tresu_0192 PF00575 S1 RNA binding domain Tresu_0192 PF09371 Tex-like protein N-terminal domain Tresu_0192 PF16921 Tex protein YqgF-like domain Tresu_0196 PF01420 Type I restriction modification DNA specificity domain Tresu_0200 PF02661 Fic/DOC family Tresu_0200 PF13784 Fic/DOC family N-terminal Tresu_0201 PF11867 Domain of unknown function (DUF3387) Tresu_0201 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0201 PF18766 SWI2/SNF2 ATPase Tresu_0202 PF02535 ZIP Zinc transporter Tresu_0204 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tresu_0205 PF00873 AcrB/AcrD/AcrF family Tresu_0209 PF00120 Glutamine synthetase, catalytic domain Tresu_0209 PF03951 Glutamine synthetase, beta-Grasp domain Tresu_0210 PF00120 Glutamine synthetase, catalytic domain Tresu_0210 PF18318 Glutamine synthetase C-terminal domain Tresu_0210 PF12437 Glutamine synthetase type III N terminal Tresu_0212 PF00535 Glycosyl transferase family 2 Tresu_0212 PF01501 Glycosyl transferase family 8 Tresu_0213 PF00909 Ammonium Transporter Family Tresu_0216 PF13173 AAA domain Tresu_0216 PF13635 Domain of unknown function (DUF4143) Tresu_0218 PF13657 HipA N-terminal domain Tresu_0218 PF07804 HipA-like C-terminal domain Tresu_0219 PF01381 Helix-turn-helix Tresu_0221 PF06580 Histidine kinase Tresu_0221 PF02743 Cache domain Tresu_0221 PF00672 HAMP domain Tresu_0221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0222 PF01497 Periplasmic binding protein Tresu_0222 PF12833 Helix-turn-helix domain Tresu_0223 PF13407 Periplasmic binding protein domain Tresu_0224 PF17863 AAA lid domain Tresu_0224 PF07726 ATPase family associated with various cellular activities (AAA) Tresu_0225 PF01882 Protein of unknown function DUF58 Tresu_0227 PF00092 von Willebrand factor type A domain Tresu_0231 PF00684 DnaJ central domain Tresu_0231 PF01556 DnaJ C terminal domain Tresu_0231 PF00226 DnaJ domain Tresu_0232 PF00075 RNase H Tresu_0234 PF01926 50S ribosome-binding GTPase Tresu_0234 PF16360 GTP-binding GTPase Middle Region Tresu_0234 PF13167 GTP-binding GTPase N-terminal Tresu_0238 PF01136 Peptidase family U32 Tresu_0238 PF12392 Collagenase Tresu_0248 PF01551 Peptidase family M23 Tresu_0248 PF01476 LysM domain Tresu_0256 PF01717 Cobalamin-independent synthase, Catalytic domain Tresu_0256 PF08267 Cobalamin-independent synthase, N-terminal domain Tresu_0258 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_0258 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_0260 PF00171 Aldehyde dehydrogenase family Tresu_0261 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Tresu_0261 PF03484 tRNA synthetase B5 domain Tresu_0287 PF00436 Single-strand binding protein family Tresu_0290 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0292 PF00206 Lyase Tresu_0292 PF10397 Adenylosuccinate lyase C-terminus Tresu_0293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tresu_0296 PF04055 Radical SAM superfamily Tresu_0296 PF18693 TRAM domain Tresu_0296 PF00919 Uncharacterized protein family UPF0004 Tresu_0297 PF13361 UvrD-like helicase C-terminal domain Tresu_0297 PF00580 UvrD/REP helicase N-terminal domain Tresu_0298 PF02424 ApbE family Tresu_0299 PF00209 Sodium:neurotransmitter symporter family Tresu_0310 PF12950 TaqI-like C-terminal specificity domain Tresu_0310 PF07669 Eco57I restriction-modification methylase Tresu_0311 PF00239 Resolvase, N terminal domain Tresu_0311 PF02796 Helix-turn-helix domain of resolvase Tresu_0313 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Tresu_0313 PF12799 Leucine Rich repeats (2 copies) Tresu_0313 PF12354 Bacterial adhesion/invasion protein N terminal Tresu_0313 PF08191 LRR adjacent Tresu_0313 PF00746 LPXTG cell wall anchor motif Tresu_0318 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Tresu_0318 PF01297 Zinc-uptake complex component A periplasmic Tresu_0319 PF02557 D-alanyl-D-alanine carboxypeptidase Tresu_0320 PF00005 ABC transporter Tresu_0337 PF01661 Macro domain Tresu_0338 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tresu_0338 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tresu_0339 PF01645 Conserved region in glutamate synthase Tresu_0339 PF01493 GXGXG motif Tresu_0339 PF04898 Glutamate synthase central domain Tresu_0339 PF00310 Glutamine amidotransferases class-II Tresu_0342 PF00365 Phosphofructokinase Tresu_0345 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tresu_0345 PF00588 SpoU rRNA Methylase family Tresu_0347 PF00672 HAMP domain Tresu_0347 PF17200 Single Cache domain 2 Tresu_0347 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0350 PF03129 Anticodon binding domain Tresu_0350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0350 PF04073 Aminoacyl-tRNA editing domain Tresu_0351 PF02561 Flagellar protein FliS Tresu_0354 PF01751 Toprim domain Tresu_0354 PF00204 DNA gyrase B Tresu_0354 PF00986 DNA gyrase B subunit, carboxyl terminus Tresu_0354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0355 PF00521 DNA gyrase/topoisomerase IV, subunit A Tresu_0357 PF01205 Uncharacterized protein family UPF0029 Tresu_0357 PF09186 Domain of unknown function (DUF1949) Tresu_0367 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0367 PF03129 Anticodon binding domain Tresu_0368 PF00248 Aldo/keto reductase family Tresu_0373 PF00905 Penicillin binding protein transpeptidase domain Tresu_0373 PF03793 PASTA domain Tresu_0373 PF03717 Penicillin-binding Protein dimerisation domain Tresu_0374 PF10502 Signal peptidase, peptidase S26 Tresu_0375 PF01551 Peptidase family M23 Tresu_0378 PF12706 Beta-lactamase superfamily domain Tresu_0378 PF16123 Hydroxyacylglutathione hydrolase C-terminus Tresu_0381 PF10369 Small subunit of acetolactate synthase Tresu_0382 PF00793 DAHP synthetase I family Tresu_0382 PF18152 DAHP synthase ferredoxin-like domain Tresu_0383 PF03447 Homoserine dehydrogenase, NAD binding domain Tresu_0383 PF00742 Homoserine dehydrogenase Tresu_0383 PF01842 ACT domain Tresu_0383 PF13840 ACT domain Tresu_0383 PF00696 Amino acid kinase family Tresu_0386 PF00472 RF-1 domain Tresu_0386 PF03462 PCRF domain Tresu_0387 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tresu_0387 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tresu_0388 PF00701 Dihydrodipicolinate synthetase family Tresu_0389 PF00196 Bacterial regulatory proteins, luxR family Tresu_0389 PF00072 Response regulator receiver domain Tresu_0390 PF01264 Chorismate synthase Tresu_0391 PF07943 Penicillin-binding protein 5, C-terminal domain Tresu_0391 PF00768 D-alanyl-D-alanine carboxypeptidase Tresu_0392 PF01177 Asp/Glu/Hydantoin racemase Tresu_0393 PF00180 Isocitrate/isopropylmalate dehydrogenase Tresu_0394 PF00557 Metallopeptidase family M24 Tresu_0395 PF00226 DnaJ domain Tresu_0395 PF00684 DnaJ central domain Tresu_0395 PF01556 DnaJ C terminal domain Tresu_0397 PF01425 Amidase Tresu_0398 PF02934 GatB/GatE catalytic domain Tresu_0398 PF02637 GatB domain Tresu_0400 PF00258 Flavodoxin Tresu_0402 PF14310 Fibronectin type III-like domain Tresu_0402 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_0402 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tresu_0403 PF12833 Helix-turn-helix domain Tresu_0403 PF02311 AraC-like ligand binding domain Tresu_0404 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_0404 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tresu_0405 PF00698 Acyl transferase domain Tresu_0407 PF00109 Beta-ketoacyl synthase, N-terminal domain Tresu_0407 PF02801 Beta-ketoacyl synthase, C-terminal domain Tresu_0408 PF07977 FabA-like domain Tresu_0410 PF00334 Nucleoside diphosphate kinase Tresu_0411 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tresu_0411 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tresu_0412 PF02978 Signal peptide binding domain Tresu_0412 PF00448 SRP54-type protein, GTPase domain Tresu_0412 PF02881 SRP54-type protein, helical bundle domain Tresu_0418 PF00155 Aminotransferase class I and II Tresu_0419 PF00155 Aminotransferase class I and II Tresu_0421 PF00128 Alpha amylase, catalytic domain Tresu_0421 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tresu_0421 PF03714 Bacterial pullanase-associated domain Tresu_0428 PF13808 DDE_Tnp_1-associated Tresu_0428 PF01609 Transposase DDE domain Tresu_0433 PF00183 Hsp90 protein Tresu_0434 PF04607 Region found in RelA / SpoT proteins Tresu_0436 PF00206 Lyase Tresu_0436 PF14698 Argininosuccinate lyase C-terminal Tresu_0437 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_0438 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0439 PF00005 ABC transporter Tresu_0440 PF07085 DRTGG domain Tresu_0440 PF02833 DHHA2 domain Tresu_0440 PF01368 DHH family Tresu_0440 PF00571 CBS domain Tresu_0442 PF00005 ABC transporter Tresu_0446 PF01479 S4 domain Tresu_0446 PF00849 RNA pseudouridylate synthase Tresu_0447 PF00476 DNA polymerase family A Tresu_0447 PF01367 5'-3' exonuclease, C-terminal SAM fold Tresu_0447 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tresu_0447 PF01612 3'-5' exonuclease Tresu_0448 PF01121 Dephospho-CoA kinase Tresu_0450 PF04073 Aminoacyl-tRNA editing domain Tresu_0451 PF13237 4Fe-4S dicluster domain Tresu_0451 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tresu_0451 PF10531 SLBB domain Tresu_0451 PF13375 RnfC Barrel sandwich hybrid domain Tresu_0452 PF03116 NQR2, RnfD, RnfE family Tresu_0454 PF02508 Rnf-Nqr subunit, membrane protein Tresu_0455 PF02508 Rnf-Nqr subunit, membrane protein Tresu_0458 PF03553 Na+/H+ antiporter family Tresu_0459 PF00860 Permease family Tresu_0461 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0461 PF01411 tRNA synthetases class II (A) Tresu_0462 PF13145 PPIC-type PPIASE domain Tresu_0463 PF01029 NusB family Tresu_0465 PF00166 Chaperonin 10 Kd subunit Tresu_0466 PF04539 Sigma-70 region 3 Tresu_0466 PF03979 Sigma-70 factor, region 1.1 Tresu_0466 PF00140 Sigma-70 factor, region 1.2 Tresu_0466 PF04545 Sigma-70, region 4 Tresu_0466 PF04542 Sigma-70 region 2 Tresu_0467 PF00270 DEAD/DEAH box helicase Tresu_0467 PF00271 Helicase conserved C-terminal domain Tresu_0467 PF17191 RecG wedge domain Tresu_0469 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tresu_0469 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tresu_0469 PF02811 PHP domain Tresu_0469 PF14579 Helix-hairpin-helix motif Tresu_0471 PF02743 Cache domain Tresu_0471 PF00672 HAMP domain Tresu_0471 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0472 PF00665 Integrase core domain Tresu_0475 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0477 PF08245 Mur ligase middle domain Tresu_0477 PF02875 Mur ligase family, glutamate ligase domain Tresu_0477 PF01225 Mur ligase family, catalytic domain Tresu_0478 PF01820 D-ala D-ala ligase N-terminus Tresu_0478 PF07478 D-ala D-ala ligase C-terminus Tresu_0479 PF08245 Mur ligase middle domain Tresu_0479 PF02875 Mur ligase family, glutamate ligase domain Tresu_0482 PF01259 SAICAR synthetase Tresu_0483 PF01226 Formate/nitrite transporter Tresu_0484 PF02446 4-alpha-glucanotransferase Tresu_0486 PF14821 Threonine synthase N terminus Tresu_0486 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_0488 PF00117 Glutamine amidotransferase class-I Tresu_0490 PF02887 Pyruvate kinase, alpha/beta domain Tresu_0490 PF00224 Pyruvate kinase, barrel domain Tresu_0490 PF00391 PEP-utilising enzyme, mobile domain Tresu_0491 PF01242 6-pyruvoyl tetrahydropterin synthase Tresu_0494 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tresu_0498 PF01381 Helix-turn-helix Tresu_0499 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tresu_0503 PF01618 MotA/TolQ/ExbB proton channel family Tresu_0504 PF02472 Biopolymer transport protein ExbD/TolR Tresu_0513 PF12161 HsdM N-terminal domain Tresu_0513 PF02384 N-6 DNA Methylase Tresu_0516 PF01420 Type I restriction modification DNA specificity domain Tresu_0517 PF01420 Type I restriction modification DNA specificity domain Tresu_0519 PF12008 Type I restriction and modification enzyme - subunit R C terminal Tresu_0519 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0519 PF18766 SWI2/SNF2 ATPase Tresu_0523 PF01202 Shikimate kinase Tresu_0524 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Tresu_0525 PF00672 HAMP domain Tresu_0525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0525 PF02743 Cache domain Tresu_0530 PF00145 C-5 cytosine-specific DNA methylase Tresu_0531 PF07728 AAA domain (dynein-related subfamily) Tresu_0536 PF00694 Aconitase C-terminal domain Tresu_0536 PF00330 Aconitase family (aconitate hydratase) Tresu_0540 PF00145 C-5 cytosine-specific DNA methylase Tresu_0542 PF01381 Helix-turn-helix Tresu_0544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0544 PF07730 Histidine kinase Tresu_0546 PF13173 AAA domain Tresu_0546 PF13635 Domain of unknown function (DUF4143) Tresu_0549 PF01467 Cytidylyltransferase-like Tresu_0550 PF04991 LicD family Tresu_0552 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Tresu_0554 PF13173 AAA domain Tresu_0554 PF13635 Domain of unknown function (DUF4143) Tresu_0557 PF01501 Glycosyl transferase family 8 Tresu_0557 PF00535 Glycosyl transferase family 2 Tresu_0575 PF13173 AAA domain Tresu_0575 PF13635 Domain of unknown function (DUF4143) Tresu_0578 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tresu_0579 PF01769 Divalent cation transporter Tresu_0579 PF03448 MgtE intracellular N domain Tresu_0579 PF00571 CBS domain Tresu_0583 PF04851 Type III restriction enzyme, res subunit Tresu_0583 PF08463 EcoEI R protein C-terminal Tresu_0583 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0583 PF00271 Helicase conserved C-terminal domain Tresu_0585 PF02384 N-6 DNA Methylase Tresu_0585 PF12161 HsdM N-terminal domain Tresu_0589 PF01420 Type I restriction modification DNA specificity domain Tresu_0594 PF01554 MatE Tresu_0595 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_0598 PF00440 Bacterial regulatory proteins, tetR family Tresu_0602 PF09334 tRNA synthetases class I (M) Tresu_0602 PF13603 Leucyl-tRNA synthetase, Domain 2 Tresu_0602 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_0602 PF08264 Anticodon-binding domain of tRNA Tresu_0603 PF16916 Dimerisation domain of Zinc Transporter Tresu_0603 PF01545 Cation efflux family Tresu_0606 PF10609 NUBPL iron-transfer P-loop NTPase Tresu_0607 PF00953 Glycosyl transferase family 4 Tresu_0608 PF00750 tRNA synthetases class I (R) Tresu_0608 PF05746 DALR anticodon binding domain Tresu_0608 PF03485 Arginyl tRNA synthetase N terminal domain Tresu_0609 PF00285 Citrate synthase, C-terminal domain Tresu_0610 PF01025 GrpE Tresu_0611 PF00012 Hsp70 protein Tresu_0612 PF00226 DnaJ domain Tresu_0612 PF01556 DnaJ C terminal domain Tresu_0612 PF00684 DnaJ central domain Tresu_0616 PF02557 D-alanyl-D-alanine carboxypeptidase Tresu_0620 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0621 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0622 PF17862 AAA+ lid domain Tresu_0622 PF01434 Peptidase family M41 Tresu_0622 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_0623 PF00753 Metallo-beta-lactamase superfamily Tresu_0624 PF03880 DbpA RNA binding domain Tresu_0626 PF00574 Clp protease Tresu_0627 PF03819 MazG nucleotide pyrophosphohydrolase domain Tresu_0628 PF01195 Peptidyl-tRNA hydrolase Tresu_0629 PF12833 Helix-turn-helix domain Tresu_0629 PF17853 GGDEF-like domain Tresu_0631 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tresu_0631 PF07683 Cobalamin synthesis protein cobW C-terminal domain Tresu_0634 PF12705 PD-(D/E)XK nuclease superfamily Tresu_0634 PF00580 UvrD/REP helicase N-terminal domain Tresu_0634 PF13361 UvrD-like helicase C-terminal domain Tresu_0638 PF01165 Ribosomal protein S21 Tresu_0639 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tresu_0639 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_0639 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_0639 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tresu_0643 PF01381 Helix-turn-helix Tresu_0645 PF01555 DNA methylase Tresu_0645 PF18273 Type III R-M EcoP15I C-terminal domain Tresu_0647 PF01548 Transposase Tresu_0647 PF02371 Transposase IS116/IS110/IS902 family Tresu_0649 PF00589 Phage integrase family Tresu_0649 PF13495 Phage integrase, N-terminal SAM-like domain Tresu_0668 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_0669 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_0671 PF01555 DNA methylase Tresu_0671 PF18755 Restriction Enzyme Adenine Methylase Associated Tresu_0673 PF01548 Transposase Tresu_0673 PF02371 Transposase IS116/IS110/IS902 family Tresu_0684 PF08378 Nuclease-related domain Tresu_0688 PF01757 Acyltransferase family Tresu_0693 PF02371 Transposase IS116/IS110/IS902 family Tresu_0693 PF01548 Transposase Tresu_0694 PF09570 SinI restriction endonuclease Tresu_0695 PF12728 Helix-turn-helix domain Tresu_0695 PF00145 C-5 cytosine-specific DNA methylase Tresu_0703 PF18284 DNA methylase N-terminal domain Tresu_0703 PF00145 C-5 cytosine-specific DNA methylase Tresu_0704 PF09019 EcoRII C terminal Tresu_0704 PF09217 Restriction endonuclease EcoRII, N-terminal Tresu_0705 PF01548 Transposase Tresu_0705 PF02371 Transposase IS116/IS110/IS902 family Tresu_0708 PF01381 Helix-turn-helix Tresu_0713 PF00145 C-5 cytosine-specific DNA methylase Tresu_0715 PF02371 Transposase IS116/IS110/IS902 family Tresu_0715 PF01548 Transposase Tresu_0740 PF02371 Transposase IS116/IS110/IS902 family Tresu_0740 PF01548 Transposase Tresu_0747 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Tresu_0751 PF14449 Pre-toxin TG Tresu_0776 PF17760 UvrA interaction domain Tresu_0776 PF17755 UvrA DNA-binding domain Tresu_0776 PF00005 ABC transporter Tresu_0778 PF02371 Transposase IS116/IS110/IS902 family Tresu_0778 PF01548 Transposase Tresu_0785 PF05973 Phage derived protein Gp49-like (DUF891) Tresu_0789 PF02371 Transposase IS116/IS110/IS902 family Tresu_0789 PF01548 Transposase Tresu_0800 PF01548 Transposase Tresu_0800 PF02371 Transposase IS116/IS110/IS902 family Tresu_0805 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Tresu_0805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tresu_0807 PF08543 Phosphomethylpyrimidine kinase Tresu_0807 PF02581 Thiamine monophosphate synthase Tresu_0808 PF02581 Thiamine monophosphate synthase Tresu_0809 PF02110 Hydroxyethylthiazole kinase family Tresu_0818 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_0818 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tresu_0819 PF00085 Thioredoxin Tresu_0821 PF01134 Glucose inhibited division protein A Tresu_0821 PF13932 GidA associated domain Tresu_0823 PF01321 Creatinase/Prolidase N-terminal domain Tresu_0823 PF00557 Metallopeptidase family M24 Tresu_0824 PF03023 Lipid II flippase MurJ Tresu_0825 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_0825 PF00672 HAMP domain Tresu_0827 PF01479 S4 domain Tresu_0827 PF00849 RNA pseudouridylate synthase Tresu_0828 PF01268 Formate--tetrahydrofolate ligase Tresu_0830 PF00682 HMGL-like Tresu_0830 PF08502 LeuA allosteric (dimerisation) domain Tresu_0831 PF00180 Isocitrate/isopropylmalate dehydrogenase Tresu_0832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0832 PF00072 Response regulator receiver domain Tresu_0832 PF01627 Hpt domain Tresu_0832 PF00512 His Kinase A (phospho-acceptor) domain Tresu_0833 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_0833 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_0834 PF01814 Hemerythrin HHE cation binding domain Tresu_0837 PF07670 Nucleoside recognition Tresu_0837 PF07664 Ferrous iron transport protein B C terminus Tresu_0837 PF17910 FeoB cytosolic helical domain Tresu_0837 PF02421 Ferrous iron transport protein B Tresu_0839 PF01235 Sodium:alanine symporter family Tresu_0841 PF04542 Sigma-70 region 2 Tresu_0841 PF08281 Sigma-70, region 4 Tresu_0843 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tresu_0843 PF00128 Alpha amylase, catalytic domain Tresu_0844 PF00343 Carbohydrate phosphorylase Tresu_0847 PF01541 GIY-YIG catalytic domain Tresu_0847 PF08459 UvrC Helix-hairpin-helix N-terminal Tresu_0847 PF02151 UvrB/uvrC motif Tresu_0850 PF00731 AIR carboxylase Tresu_0851 PF00156 Phosphoribosyl transferase domain Tresu_0867 PF02608 ABC transporter substrate-binding protein PnrA-like Tresu_0868 PF00665 Integrase core domain Tresu_0874 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0877 PF06414 Zeta toxin Tresu_0879 PF02769 AIR synthase related protein, C-terminal domain Tresu_0879 PF00586 AIR synthase related protein, N-terminal domain Tresu_0880 PF00551 Formyl transferase Tresu_0880 PF02911 Formyl transferase, C-terminal domain Tresu_0881 PF00899 ThiF family Tresu_0882 PF00691 OmpA family Tresu_0882 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tresu_0883 PF17202 Single cache domain 3 Tresu_0883 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0883 PF00672 HAMP domain Tresu_0885 PF00682 HMGL-like Tresu_0885 PF02436 Conserved carboxylase domain Tresu_0886 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Tresu_0889 PF02371 Transposase IS116/IS110/IS902 family Tresu_0889 PF01548 Transposase Tresu_0891 PF00829 Ribosomal prokaryotic L21 protein Tresu_0892 PF04327 Cysteine protease Prp Tresu_0893 PF01016 Ribosomal L27 protein Tresu_0894 PF01018 GTP1/OBG Tresu_0894 PF01926 50S ribosome-binding GTPase Tresu_0895 PF01467 Cytidylyltransferase-like Tresu_0899 PF01464 Transglycosylase SLT domain Tresu_0899 PF01476 LysM domain Tresu_0903 PF02699 Preprotein translocase subunit Tresu_0904 PF02355 Protein export membrane protein Tresu_0905 PF02355 Protein export membrane protein Tresu_0906 PF02401 LytB protein Tresu_0909 PF01432 Peptidase family M3 Tresu_0909 PF08439 Oligopeptidase F Tresu_0910 PF08239 Bacterial SH3 domain Tresu_0911 PF00005 ABC transporter Tresu_0911 PF16326 ABC transporter C-terminal domain Tresu_0911 PF12848 ABC transporter Tresu_0912 PF16363 GDP-mannose 4,6 dehydratase Tresu_0913 PF07687 Peptidase dimerisation domain Tresu_0913 PF01546 Peptidase family M20/M25/M40 Tresu_0917 PF00072 Response regulator receiver domain Tresu_0917 PF09308 LuxQ, periplasmic Tresu_0917 PF00512 His Kinase A (phospho-acceptor) domain Tresu_0917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0919 PF00486 Transcriptional regulatory protein, C terminal Tresu_0919 PF00072 Response regulator receiver domain Tresu_0920 PF13808 DDE_Tnp_1-associated Tresu_0920 PF01609 Transposase DDE domain Tresu_0921 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_0921 PF17758 Proteasomal ATPase OB N-terminal domain Tresu_0921 PF16450 Proteasomal ATPase OB C-terminal domain Tresu_0926 PF18766 SWI2/SNF2 ATPase Tresu_0926 PF11867 Domain of unknown function (DUF3387) Tresu_0926 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0933 PF00251 Glycosyl hydrolases family 32 N-terminal domain Tresu_0933 PF08244 Glycosyl hydrolases family 32 C terminal Tresu_0934 PF00294 pfkB family carbohydrate kinase Tresu_0936 PF00210 Ferritin-like domain Tresu_0950 PF00862 Sucrose synthase Tresu_0950 PF00534 Glycosyl transferases group 1 Tresu_0962 PF02743 Cache domain Tresu_0962 PF00672 HAMP domain Tresu_0962 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0963 PF01960 ArgJ family Tresu_0964 PF00696 Amino acid kinase family Tresu_0965 PF00202 Aminotransferase class-III Tresu_0966 PF17239 Family of unknown function (DUF5312) Tresu_0968 PF00764 Arginosuccinate synthase Tresu_0969 PF00121 Triosephosphate isomerase Tresu_0970 PF02417 Chromate transporter Tresu_0973 PF00472 RF-1 domain Tresu_0973 PF03462 PCRF domain Tresu_0974 PF05175 Methyltransferase small domain Tresu_0974 PF17827 PrmC N-terminal domain Tresu_0976 PF00465 Iron-containing alcohol dehydrogenase Tresu_0978 PF00005 ABC transporter Tresu_0979 PF00950 ABC 3 transport family Tresu_0980 PF13419 Haloacid dehalogenase-like hydrolase Tresu_0981 PF01713 Smr domain Tresu_0981 PF00488 MutS domain V Tresu_0982 PF01316 Arginine repressor, DNA binding domain Tresu_0982 PF02863 Arginine repressor, C-terminal domain Tresu_0984 PF00342 Phosphoglucose isomerase Tresu_0985 PF01026 TatD related DNase Tresu_0988 PF02021 Uncharacterised protein family UPF0102 Tresu_0989 PF01312 FlhB HrpN YscU SpaS Family Tresu_0991 PF01245 Ribosomal protein L19 Tresu_0992 PF01746 tRNA (Guanine-1)-methyltransferase Tresu_0993 PF01782 RimM N-terminal domain Tresu_0995 PF00886 Ribosomal protein S16 Tresu_0996 PF00288 GHMP kinases N terminal domain Tresu_0996 PF08544 GHMP kinases C terminal Tresu_0996 PF10509 Galactokinase galactose-binding signature Tresu_0997 PF01966 HD domain Tresu_0997 PF00013 KH domain Tresu_0997 PF12072 Domain of unknown function (DUF3552) Tresu_1000 PF03062 MBOAT, membrane-bound O-acyltransferase family Tresu_1001 PF00550 Phosphopantetheine attachment site Tresu_1001 PF00501 AMP-binding enzyme Tresu_1001 PF00668 Condensation domain Tresu_1001 PF13193 AMP-binding enzyme C-terminal domain Tresu_1002 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_1002 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_1004 PF00535 Glycosyl transferase family 2 Tresu_1010 PF05523 WxcM-like, C-terminal Tresu_1011 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1012 PF00535 Glycosyl transferase family 2 Tresu_1021 PF16868 NMT1-like family Tresu_1032 PF01979 Amidohydrolase family Tresu_1032 PF13382 Adenine deaminase C-terminal domain Tresu_1033 PF02190 ATP-dependent protease La (LON) substrate-binding domain Tresu_1033 PF05362 Lon protease (S16) C-terminal proteolytic domain Tresu_1033 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1040 PF03793 PASTA domain Tresu_1040 PF00069 Protein kinase domain Tresu_1042 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Tresu_1042 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Tresu_1042 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Tresu_1043 PF00106 short chain dehydrogenase Tresu_1044 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_1045 PF01189 16S rRNA methyltransferase RsmB/F Tresu_1045 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Tresu_1045 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Tresu_1046 PF00072 Response regulator receiver domain Tresu_1047 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Tresu_1048 PF05164 Cell division protein ZapA Tresu_1050 PF00453 Ribosomal protein L20 Tresu_1051 PF01632 Ribosomal protein L35 Tresu_1052 PF05198 Translation initiation factor IF-3, N-terminal domain Tresu_1052 PF00707 Translation initiation factor IF-3, C-terminal domain Tresu_1054 PF01116 Fructose-bisphosphate aldolase class-II Tresu_1058 PF01330 RuvA N terminal domain Tresu_1059 PF17864 RuvB AAA lid domain Tresu_1059 PF05496 Holliday junction DNA helicase RuvB P-loop domain Tresu_1059 PF05491 RuvB C-terminal winged helix domain Tresu_1060 PF02547 Queuosine biosynthesis protein Tresu_1064 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1065 PF02719 Polysaccharide biosynthesis protein Tresu_1066 PF03477 ATP cone domain Tresu_1068 PF00795 Carbon-nitrogen hydrolase Tresu_1069 PF10509 Galactokinase galactose-binding signature Tresu_1069 PF08544 GHMP kinases C terminal Tresu_1070 PF01975 Survival protein SurE Tresu_1071 PF13176 Tetratricopeptide repeat Tresu_1071 PF13181 Tetratricopeptide repeat Tresu_1073 PF00817 impB/mucB/samB family Tresu_1073 PF11799 impB/mucB/samB family C-terminal domain Tresu_1073 PF11798 IMS family HHH motif Tresu_1077 PF02390 Putative methyltransferase Tresu_1078 PF03120 NAD-dependent DNA ligase OB-fold domain Tresu_1078 PF00533 BRCA1 C Terminus (BRCT) domain Tresu_1078 PF01653 NAD-dependent DNA ligase adenylation domain Tresu_1079 PF08525 Opacity-associated protein A N-terminal motif Tresu_1079 PF01476 LysM domain Tresu_1079 PF01551 Peptidase family M23 Tresu_1080 PF01368 DHH family Tresu_1080 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Tresu_1080 PF02272 DHHA1 domain Tresu_1080 PF17768 RecJ OB domain Tresu_1081 PF02885 Glycosyl transferase family, helical bundle domain Tresu_1081 PF00591 Glycosyl transferase family, a/b domain Tresu_1081 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Tresu_1086 PF13808 DDE_Tnp_1-associated Tresu_1086 PF01609 Transposase DDE domain Tresu_1094 PF00589 Phage integrase family Tresu_1094 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1096 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1096 PF00589 Phage integrase family Tresu_1101 PF02646 RmuC family Tresu_1110 PF00589 Phage integrase family Tresu_1110 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1113 PF01420 Type I restriction modification DNA specificity domain Tresu_1114 PF02384 N-6 DNA Methylase Tresu_1114 PF12161 HsdM N-terminal domain Tresu_1115 PF08463 EcoEI R protein C-terminal Tresu_1115 PF00271 Helicase conserved C-terminal domain Tresu_1115 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_1115 PF04851 Type III restriction enzyme, res subunit Tresu_1120 PF00460 Flagella basal body rod protein Tresu_1120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1121 PF02049 Flagellar hook-basal body complex protein FliE Tresu_1122 PF08345 Flagellar M-ring protein C-terminal Tresu_1122 PF01514 Secretory protein of YscJ/FliF family Tresu_1123 PF01706 FliG C-terminal domain Tresu_1123 PF14842 FliG N-terminal domain Tresu_1123 PF14841 FliG middle domain Tresu_1124 PF02108 Flagellar assembly protein FliH Tresu_1125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1125 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1125 PF18269 T3SS EscN ATPase C-terminal domain Tresu_1127 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_1127 PF03129 Anticodon binding domain Tresu_1127 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_1128 PF17762 HTH domain found in ParB protein Tresu_1128 PF02195 ParB-like nuclease domain Tresu_1129 PF00905 Penicillin binding protein transpeptidase domain Tresu_1129 PF17092 Penicillin-binding protein OB-like domain Tresu_1129 PF00912 Transglycosylase Tresu_1130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_1130 PF01872 RibD C-terminal domain Tresu_1131 PF00677 Lumazine binding domain Tresu_1132 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tresu_1132 PF00925 GTP cyclohydrolase II Tresu_1133 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tresu_1134 PF13393 Histidyl-tRNA synthetase Tresu_1135 PF03309 Type III pantothenate kinase Tresu_1136 PF08666 SAF domain Tresu_1136 PF03102 NeuB family Tresu_1137 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_1137 PF08264 Anticodon-binding domain of tRNA Tresu_1142 PF01973 Protein of unknown function DUF115 Tresu_1147 PF01668 SmpB protein Tresu_1149 PF04055 Radical SAM superfamily Tresu_1150 PF02779 Transketolase, pyrimidine binding domain Tresu_1150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tresu_1150 PF02780 Transketolase, C-terminal domain Tresu_1151 PF00809 Pterin binding enzyme Tresu_1152 PF02457 DisA bacterial checkpoint controller nucleotide-binding Tresu_1154 PF01648 4'-phosphopantetheinyl transferase superfamily Tresu_1155 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) Tresu_1156 PF01416 tRNA pseudouridine synthase Tresu_1160 PF00293 NUDIX domain Tresu_1164 PF01740 STAS domain Tresu_1171 PF01119 DNA mismatch repair protein, C-terminal domain Tresu_1171 PF08676 MutL C terminal dimerisation domain Tresu_1172 PF02609 Exonuclease VII small subunit Tresu_1173 PF02601 Exonuclease VII, large subunit Tresu_1173 PF13742 OB-fold nucleic acid binding domain Tresu_1174 PF13186 Iron-sulfur cluster-binding domain Tresu_1176 PF02348 Cytidylyltransferase Tresu_1177 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tresu_1177 PF02142 MGS-like domain Tresu_1177 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tresu_1178 PF01520 N-acetylmuramoyl-L-alanine amidase Tresu_1180 PF04620 Flagellar filament outer layer protein Flaa Tresu_1182 PF06826 Predicted Permease Membrane Region Tresu_1182 PF02080 TrkA-C domain Tresu_1183 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_1183 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_1189 PF00301 Rubredoxin Tresu_1189 PF01613 Flavin reductase like domain Tresu_1195 PF18273 Type III R-M EcoP15I C-terminal domain Tresu_1195 PF01555 DNA methylase Tresu_1199 PF00270 DEAD/DEAH box helicase Tresu_1199 PF00271 Helicase conserved C-terminal domain Tresu_1200 PF00005 ABC transporter Tresu_1200 PF12848 ABC transporter Tresu_1202 PF02163 Peptidase family M50 Tresu_1202 PF17820 PDZ domain Tresu_1203 PF13288 DXP reductoisomerase C-terminal domain Tresu_1203 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Tresu_1203 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tresu_1205 PF01255 Putative undecaprenyl diphosphate synthase Tresu_1206 PF01765 Ribosome recycling factor Tresu_1207 PF00889 Elongation factor TS Tresu_1208 PF00318 Ribosomal protein S2 Tresu_1209 PF02545 Maf-like protein Tresu_1212 PF01467 Cytidylyltransferase-like Tresu_1213 PF01783 Ribosomal L32p protein family Tresu_1214 PF00550 Phosphopantetheine attachment site Tresu_1215 PF00035 Double-stranded RNA binding motif Tresu_1215 PF14622 Ribonuclease-III-like Tresu_1216 PF12627 Probable RNA and SrmB- binding site of polymerase A Tresu_1216 PF13735 tRNA nucleotidyltransferase domain 2 putative Tresu_1216 PF01743 Poly A polymerase head domain Tresu_1221 PF08323 Starch synthase catalytic domain Tresu_1221 PF00534 Glycosyl transferases group 1 Tresu_1224 PF05958 tRNA (Uracil-5-)-methyltransferase Tresu_1225 PF13419 Haloacid dehalogenase-like hydrolase Tresu_1226 PF01197 Ribosomal protein L31 Tresu_1228 PF10672 S-adenosylmethionine-dependent methyltransferase Tresu_1233 PF00145 C-5 cytosine-specific DNA methylase Tresu_1233 PF01381 Helix-turn-helix Tresu_1234 PF00216 Bacterial DNA-binding protein Tresu_1235 PF01250 Ribosomal protein S6 Tresu_1236 PF00436 Single-strand binding protein family Tresu_1237 PF01084 Ribosomal protein S18 Tresu_1238 PF03948 Ribosomal protein L9, C-terminal domain Tresu_1238 PF01281 Ribosomal protein L9, N-terminal domain Tresu_1239 PF03796 DnaB-like helicase C terminal domain Tresu_1239 PF00772 DnaB-like helicase N terminal domain Tresu_1242 PF08275 DNA primase catalytic core, N-terminal domain Tresu_1242 PF01807 CHC2 zinc finger Tresu_1243 PF00140 Sigma-70 factor, region 1.2 Tresu_1243 PF04542 Sigma-70 region 2 Tresu_1243 PF04539 Sigma-70 region 3 Tresu_1243 PF04545 Sigma-70, region 4 Tresu_1243 PF03979 Sigma-70 factor, region 1.1 Tresu_1249 PF03717 Penicillin-binding Protein dimerisation domain Tresu_1249 PF00905 Penicillin binding protein transpeptidase domain Tresu_1250 PF01098 Cell cycle protein Tresu_1252 PF00271 Helicase conserved C-terminal domain Tresu_1252 PF03461 TRCF domain Tresu_1252 PF00270 DEAD/DEAH box helicase Tresu_1252 PF02559 CarD-like/TRCF domain Tresu_1252 PF17757 UvrB interaction domain Tresu_1255 PF13419 Haloacid dehalogenase-like hydrolase Tresu_1256 PF01168 Alanine racemase, N-terminal domain Tresu_1256 PF00842 Alanine racemase, C-terminal domain Tresu_1257 PF08245 Mur ligase middle domain Tresu_1257 PF02875 Mur ligase family, glutamate ligase domain Tresu_1260 PF00005 ABC transporter Tresu_1261 PF00753 Metallo-beta-lactamase superfamily Tresu_1261 PF12706 Beta-lactamase superfamily domain Tresu_1263 PF01050 Mannose-6-phosphate isomerase Tresu_1263 PF00483 Nucleotidyl transferase Tresu_1264 PF04321 RmlD substrate binding domain Tresu_1266 PF00873 AcrB/AcrD/AcrF family Tresu_1269 PF08361 MAATS-type transcriptional repressor, C-terminal region Tresu_1269 PF00440 Bacterial regulatory proteins, tetR family Tresu_1270 PF00849 RNA pseudouridylate synthase Tresu_1270 PF01479 S4 domain Tresu_1271 PF00849 RNA pseudouridylate synthase Tresu_1273 PF01168 Alanine racemase, N-terminal domain Tresu_1274 PF00398 Ribosomal RNA adenine dimethylase Tresu_1279 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_1279 PF14821 Threonine synthase N terminus Tresu_1282 PF08245 Mur ligase middle domain Tresu_1282 PF02875 Mur ligase family, glutamate ligase domain Tresu_1282 PF01225 Mur ligase family, catalytic domain Tresu_1283 PF01261 Xylose isomerase-like TIM barrel Tresu_1284 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tresu_1284 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tresu_1285 PF01497 Periplasmic binding protein Tresu_1285 PF12833 Helix-turn-helix domain Tresu_1286 PF00226 DnaJ domain Tresu_1286 PF01556 DnaJ C terminal domain Tresu_1286 PF00684 DnaJ central domain Tresu_1287 PF02954 Bacterial regulatory protein, Fis family Tresu_1287 PF00072 Response regulator receiver domain Tresu_1287 PF00158 Sigma-54 interaction domain Tresu_1288 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1288 PF13426 PAS domain Tresu_1288 PF13188 PAS domain Tresu_1288 PF00989 PAS fold Tresu_1289 PF12169 DNA polymerase III subunits gamma and tau domain III Tresu_1291 PF04101 Glycosyltransferase family 28 C-terminal domain Tresu_1291 PF03033 Glycosyltransferase family 28 N-terminal domain Tresu_1292 PF12796 Ankyrin repeats (3 copies) Tresu_1294 PF00005 ABC transporter Tresu_1295 PF00005 ABC transporter Tresu_1297 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tresu_1297 PF05698 Bacterial trigger factor protein (TF) C-terminus Tresu_1297 PF05697 Bacterial trigger factor protein (TF) Tresu_1298 PF00574 Clp protease Tresu_1299 PF07724 AAA domain (Cdc48 subfamily) Tresu_1299 PF06689 ClpX C4-type zinc finger Tresu_1299 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_1300 PF00534 Glycosyl transferases group 1 Tresu_1300 PF13439 Glycosyltransferase Family 4 Tresu_1301 PF00271 Helicase conserved C-terminal domain Tresu_1301 PF00270 DEAD/DEAH box helicase Tresu_1302 PF06470 SMC proteins Flexible Hinge Domain Tresu_1302 PF02463 RecF/RecN/SMC N terminal domain Tresu_1304 PF13525 Outer membrane lipoprotein Tresu_1306 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_1306 PF02403 Seryl-tRNA synthetase N-terminal domain Tresu_1307 PF01594 AI-2E family transporter Tresu_1310 PF01027 Inhibitor of apoptosis-promoting Bax1 Tresu_1311 PF13307 Helicase C-terminal domain Tresu_1311 PF06733 DEAD_2 Tresu_1312 PF00056 lactate/malate dehydrogenase, NAD binding domain Tresu_1312 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Tresu_1313 PF10415 Fumarase C C-terminus Tresu_1313 PF00206 Lyase Tresu_1320 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tresu_1320 PF00970 Oxidoreductase FAD-binding domain Tresu_1322 PF00890 FAD binding domain Tresu_1322 PF02910 Fumarate reductase flavoprotein C-term Tresu_1324 PF00535 Glycosyl transferase family 2 Tresu_1331 PF00535 Glycosyl transferase family 2 Tresu_1331 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Tresu_1333 PF04991 LicD family Tresu_1334 PF01467 Cytidylyltransferase-like Tresu_1337 PF09334 tRNA synthetases class I (M) Tresu_1337 PF01588 Putative tRNA binding domain Tresu_1338 PF02388 FemAB family Tresu_1345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tresu_1345 PF13237 4Fe-4S dicluster domain Tresu_1345 PF10531 SLBB domain Tresu_1345 PF13375 RnfC Barrel sandwich hybrid domain Tresu_1348 PF00849 RNA pseudouridylate synthase Tresu_1350 PF01743 Poly A polymerase head domain Tresu_1350 PF12626 Polymerase A arginine-rich C-terminus Tresu_1350 PF12627 Probable RNA and SrmB- binding site of polymerase A Tresu_1351 PF12146 Serine aminopeptidase, S33 Tresu_1352 PF00579 tRNA synthetases class I (W and Y) Tresu_1353 PF00534 Glycosyl transferases group 1 Tresu_1353 PF08323 Starch synthase catalytic domain Tresu_1354 PF00155 Aminotransferase class I and II Tresu_1357 PF02653 Branched-chain amino acid transport system / permease component Tresu_1358 PF00005 ABC transporter Tresu_1359 PF13407 Periplasmic binding protein domain Tresu_1359 PF18610 Periplasmic binding protein domain Tresu_1361 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Tresu_1361 PF06165 Glycosyltransferase family 36 Tresu_1366 PF04055 Radical SAM superfamily Tresu_1368 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_1368 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_1369 PF00330 Aconitase family (aconitate hydratase) Tresu_1370 PF00694 Aconitase C-terminal domain Tresu_1373 PF16738 Starch-binding module 26 Tresu_1373 PF00128 Alpha amylase, catalytic domain Tresu_1374 PF16338 Domain of unknown function (DUF4968) Tresu_1374 PF17137 Domain of unknown function (DUF5110) Tresu_1374 PF01055 Glycosyl hydrolases family 31 Tresu_1374 PF13802 Galactose mutarotase-like Tresu_1376 PF00860 Permease family Tresu_1378 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tresu_1379 PF00005 ABC transporter Tresu_1381 PF01381 Helix-turn-helix Tresu_1384 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tresu_1384 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tresu_1384 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tresu_1386 PF00700 Bacterial flagellin C-terminal helical region Tresu_1386 PF00669 Bacterial flagellin N-terminal helical region Tresu_1387 PF00700 Bacterial flagellin C-terminal helical region Tresu_1387 PF00669 Bacterial flagellin N-terminal helical region Tresu_1388 PF03646 FlaG protein Tresu_1389 PF02465 Flagellar hook-associated protein 2 N-terminus Tresu_1389 PF07195 Flagellar hook-associated protein 2 C-terminus Tresu_1393 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Tresu_1394 PF00814 Glycoprotease family Tresu_1395 PF02599 Global regulator protein family Tresu_1396 PF02623 FliW protein Tresu_1397 PF00700 Bacterial flagellin C-terminal helical region Tresu_1397 PF00669 Bacterial flagellin N-terminal helical region Tresu_1398 PF07196 Flagellin hook IN motif Tresu_1398 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1401 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1401 PF00460 Flagella basal body rod protein Tresu_1402 PF00460 Flagella basal body rod protein Tresu_1402 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1403 PF00563 EAL domain Tresu_1403 PF00990 Diguanylate cyclase, GGDEF domain Tresu_1403 PF03707 Bacterial signalling protein N terminal repeat Tresu_1405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1405 PF07498 Rho termination factor, N-terminal domain Tresu_1405 PF07497 Rho termination factor, RNA-binding domain Tresu_1407 PF00216 Bacterial DNA-binding protein Tresu_1408 PF01649 Ribosomal protein S20 Tresu_1411 PF07745 Glycosyl hydrolase family 53 Tresu_1421 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tresu_1421 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tresu_1423 PF02272 DHHA1 domain Tresu_1423 PF01368 DHH family Tresu_1425 PF01609 Transposase DDE domain Tresu_1425 PF13808 DDE_Tnp_1-associated Tresu_1426 PF01725 Ham1 family Tresu_1427 PF14849 YidC periplasmic domain Tresu_1427 PF02096 60Kd inner membrane protein Tresu_1428 PF13439 Glycosyltransferase Family 4 Tresu_1428 PF00534 Glycosyl transferases group 1 Tresu_1429 PF02397 Bacterial sugar transferase Tresu_1432 PF04551 GcpE protein Tresu_1435 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1436 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1436 PF16886 ATPsynthase alpha/beta subunit N-term extension Tresu_1436 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1438 PF01991 ATP synthase (E/31 kDa) subunit Tresu_1439 PF01263 Aldose 1-epimerase Tresu_1445 PF02687 FtsX-like permease family Tresu_1445 PF12704 MacB-like periplasmic core domain Tresu_1446 PF00682 HMGL-like Tresu_1446 PF08502 LeuA allosteric (dimerisation) domain Tresu_1447 PF16314 Domain of unknown function (DUF4954) Tresu_1450 PF13286 Phosphohydrolase-associated domain Tresu_1450 PF01966 HD domain Tresu_1454 PF07745 Glycosyl hydrolase family 53 Tresu_1465 PF00456 Transketolase, thiamine diphosphate binding domain Tresu_1465 PF02779 Transketolase, pyrimidine binding domain Tresu_1466 PF05524 PEP-utilising enzyme, N-terminal Tresu_1466 PF00391 PEP-utilising enzyme, mobile domain Tresu_1466 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_1466 PF00381 PTS HPr component phosphorylation site Tresu_1466 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1469 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tresu_1469 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tresu_1469 PF00205 Thiamine pyrophosphate enzyme, central domain Tresu_1470 PF16258 Domain of unknown function (DUF4912) Tresu_1472 PF02096 60Kd inner membrane protein Tresu_1472 PF14849 YidC periplasmic domain Tresu_1474 PF00155 Aminotransferase class I and II Tresu_1482 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_1482 PF02861 Clp amino terminal domain, pathogenicity island component Tresu_1482 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1482 PF17871 AAA lid domain Tresu_1482 PF07724 AAA domain (Cdc48 subfamily) Tresu_1485 PF00675 Insulinase (Peptidase family M16) Tresu_1485 PF05193 Peptidase M16 inactive domain Tresu_1485 PF08367 Peptidase M16C associated Tresu_1486 PF14841 FliG middle domain Tresu_1486 PF14842 FliG N-terminal domain Tresu_1486 PF01706 FliG C-terminal domain Tresu_1487 PF00595 PDZ domain Tresu_1488 PF02659 Putative manganese efflux pump Tresu_1490 PF03590 Aspartate-ammonia ligase Tresu_1491 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tresu_1491 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tresu_1494 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Tresu_1494 PF00271 Helicase conserved C-terminal domain Tresu_1494 PF04408 Helicase associated domain (HA2) Tresu_1494 PF00270 DEAD/DEAH box helicase Tresu_1503 PF05191 Adenylate kinase, active site lid Tresu_1504 PF01479 S4 domain Tresu_1504 PF00579 tRNA synthetases class I (W and Y) Tresu_1507 PF00266 Aminotransferase class-V Tresu_1509 PF01458 Uncharacterized protein family (UPF0051) Tresu_1510 PF00005 ABC transporter Tresu_1516 PF00005 ABC transporter Tresu_1517 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_1518 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_1519 PF00919 Uncharacterized protein family UPF0004 Tresu_1519 PF01938 TRAM domain Tresu_1519 PF04055 Radical SAM superfamily Tresu_1521 PF02649 Type I GTP cyclohydrolase folE2 Tresu_1522 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tresu_1522 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tresu_1525 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1525 PF16193 AAA C-terminal domain Tresu_1525 PF12002 MgsA AAA+ ATPase C terminal Tresu_1526 PF05175 Methyltransferase small domain Tresu_1527 PF16199 Radical_SAM C-terminal domain Tresu_1527 PF04055 Radical SAM superfamily Tresu_1528 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tresu_1528 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tresu_1529 PF01370 NAD dependent epimerase/dehydratase family Tresu_1532 PF04539 Sigma-70 region 3 Tresu_1532 PF04545 Sigma-70, region 4 Tresu_1532 PF04542 Sigma-70 region 2 Tresu_1534 PF10609 NUBPL iron-transfer P-loop NTPase Tresu_1535 PF00448 SRP54-type protein, GTPase domain Tresu_1536 PF00771 FHIPEP family Tresu_1537 PF01312 FlhB HrpN YscU SpaS Family Tresu_1538 PF01311 Bacterial export proteins, family 1 Tresu_1539 PF01313 Bacterial export proteins, family 3 Tresu_1540 PF00813 FliP family Tresu_1542 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tresu_1543 PF02154 Flagellar motor switch protein FliM Tresu_1543 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tresu_1544 PF03748 Flagellar basal body-associated protein FliL Tresu_1545 PF00691 OmpA family Tresu_1545 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tresu_1546 PF01618 MotA/TolQ/ExbB proton channel family Tresu_1547 PF06289 Flagellar and Swarming motility proteins Tresu_1548 PF01966 HD domain Tresu_1548 PF12072 Domain of unknown function (DUF3552) Tresu_1548 PF00013 KH domain Tresu_1549 PF00486 Transcriptional regulatory protein, C terminal Tresu_1549 PF00072 Response regulator receiver domain Tresu_1550 PF00989 PAS fold Tresu_1550 PF00672 HAMP domain Tresu_1550 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1550 PF18698 Histidine kinase sensor domain Tresu_1550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1553 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1553 PF00460 Flagella basal body rod protein Tresu_1553 PF07559 Flagellar basal body protein FlaE Tresu_1554 PF03963 Flagellar hook capping protein - N-terminal region Tresu_1559 PF00580 UvrD/REP helicase N-terminal domain Tresu_1559 PF13361 UvrD-like helicase C-terminal domain Tresu_1561 PF16363 GDP-mannose 4,6 dehydratase Tresu_1562 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Tresu_1563 PF00483 Nucleotidyl transferase Tresu_1565 PF10502 Signal peptidase, peptidase S26 Tresu_1565 PF10502 Signal peptidase, peptidase S26 Tresu_1567 PF04453 LPS transport system D Tresu_1567 PF03968 OstA-like protein Tresu_1568 PF17755 UvrA DNA-binding domain Tresu_1568 PF00005 ABC transporter Tresu_1568 PF17760 UvrA interaction domain Tresu_1569 PF01554 MatE Tresu_1570 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_1571 PF02082 Transcriptional regulator Tresu_1575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1575 PF00672 HAMP domain Tresu_1577 PF02926 THUMP domain Tresu_1577 PF02568 Thiamine biosynthesis protein (ThiI) Tresu_1580 PF13439 Glycosyltransferase Family 4 Tresu_1580 PF00534 Glycosyl transferases group 1 Tresu_1581 PF03167 Uracil DNA glycosylase superfamily Tresu_1582 PF00271 Helicase conserved C-terminal domain Tresu_1582 PF17764 3′ DNA-binding domain (3′BD) Tresu_1582 PF18074 Primosomal protein N C-terminal domain Tresu_1582 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Tresu_1582 PF00270 DEAD/DEAH box helicase Tresu_1583 PF00501 AMP-binding enzyme Tresu_1583 PF13193 AMP-binding enzyme C-terminal domain Tresu_1584 PF07516 SecA Wing and Scaffold domain Tresu_1584 PF02810 SEC-C motif Tresu_1584 PF01043 SecA preprotein cross-linking domain Tresu_1584 PF07517 SecA DEAD-like domain Tresu_1585 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1585 PF07724 AAA domain (Cdc48 subfamily) Tresu_1586 PF00227 Proteasome subunit Tresu_1587 PF00589 Phage integrase family Tresu_1587 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1588 PF01131 DNA topoisomerase Tresu_1588 PF01751 Toprim domain Tresu_1588 PF01396 Topoisomerase DNA binding C4 zinc finger Tresu_1589 PF02481 DNA recombination-mediator protein A Tresu_1589 PF17782 DprA winged helix domain Tresu_1591 PF00589 Phage integrase family Tresu_1591 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1592 PF00091 Tubulin/FtsZ family, GTPase domain Tresu_1592 PF12327 FtsZ family, C-terminal domain Tresu_1593 PF02491 SHS2 domain inserted in FTSA Tresu_1595 PF01098 Cell cycle protein Tresu_1596 PF01225 Mur ligase family, catalytic domain Tresu_1596 PF08245 Mur ligase middle domain Tresu_1596 PF02875 Mur ligase family, glutamate ligase domain Tresu_1598 PF01795 MraW methylase family Tresu_1599 PF02381 MraZ protein, putative antitoxin-like Tresu_1601 PF02075 Crossover junction endodeoxyribonuclease RuvC Tresu_1602 PF01709 Transcriptional regulator Tresu_1604 PF01548 Transposase Tresu_1604 PF02371 Transposase IS116/IS110/IS902 family Tresu_1605 PF01479 S4 domain Tresu_1605 PF00849 RNA pseudouridylate synthase Tresu_1607 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1607 PF00381 PTS HPr component phosphorylation site Tresu_1607 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_1607 PF00391 PEP-utilising enzyme, mobile domain Tresu_1607 PF05524 PEP-utilising enzyme, N-terminal Tresu_1611 PF00072 Response regulator receiver domain Tresu_1613 PF01584 CheW-like domain Tresu_1614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1614 PF02895 Signal transducing histidine kinase, homodimeric domain Tresu_1614 PF01627 Hpt domain Tresu_1614 PF01584 CheW-like domain Tresu_1614 PF07194 P2 response regulator binding domain Tresu_1616 PF00486 Transcriptional regulatory protein, C terminal Tresu_1616 PF00072 Response regulator receiver domain Tresu_1618 PF01813 ATP synthase subunit D Tresu_1619 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1619 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1620 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1620 PF16886 ATPsynthase alpha/beta subunit N-term extension Tresu_1624 PF01496 V-type ATPase 116kDa subunit family Tresu_1627 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1628 PF03840 Preprotein translocase SecG subunit Tresu_1636 PF00140 Sigma-70 factor, region 1.2 Tresu_1636 PF04542 Sigma-70 region 2 Tresu_1636 PF04539 Sigma-70 region 3 Tresu_1636 PF04545 Sigma-70, region 4 Tresu_1636 PF03979 Sigma-70 factor, region 1.1 Tresu_1649 PF03848 Tellurite resistance protein TehB Tresu_1649 PF09313 Domain of unknown function (DUF1971) Tresu_1650 PF03352 Methyladenine glycosylase Tresu_1657 PF01026 TatD related DNase Tresu_1660 PF17785 PUA-like domain Tresu_1660 PF10672 S-adenosylmethionine-dependent methyltransferase Tresu_1661 PF00162 Phosphoglycerate kinase Tresu_1663 PF03471 Transporter associated domain Tresu_1663 PF00571 CBS domain Tresu_1664 PF02130 Uncharacterized protein family UPF0054 Tresu_1665 PF01966 HD domain Tresu_1665 PF07697 7TM-HD extracellular Tresu_1665 PF07698 7TM receptor with intracellular HD hydrolase Tresu_1666 PF02562 PhoH-like protein Tresu_1668 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_1668 PF10458 Valyl tRNA synthetase tRNA binding arm Tresu_1668 PF08264 Anticodon-binding domain of tRNA Tresu_1669 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_1672 PF00293 NUDIX domain Tresu_1675 PF13173 AAA domain Tresu_1675 PF13635 Domain of unknown function (DUF4143) Tresu_1676 PF04260 Protein of unknown function (DUF436) Tresu_1677 PF03471 Transporter associated domain Tresu_1677 PF01595 Cyclin M transmembrane N-terminal domain Tresu_1677 PF00571 CBS domain Tresu_1682 PF00145 C-5 cytosine-specific DNA methylase Tresu_1685 PF01209 ubiE/COQ5 methyltransferase family Tresu_1687 PF01555 DNA methylase Tresu_1688 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1688 PF00672 HAMP domain Tresu_1689 PF00486 Transcriptional regulatory protein, C terminal Tresu_1689 PF00072 Response regulator receiver domain Tresu_1691 PF01555 DNA methylase Tresu_1694 PF04556 DpnII restriction endonuclease Tresu_1696 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_1701 PF01969 Protein of unknown function DUF111 Tresu_1702 PF00731 AIR carboxylase Tresu_1703 PF02540 NAD synthase Tresu_1706 PF00672 HAMP domain Tresu_1706 PF17200 Single Cache domain 2 Tresu_1706 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1710 PF13614 AAA domain Tresu_1725 PF00436 Single-strand binding protein family Tresu_1736 PF00176 SNF2 family N-terminal domain Tresu_1736 PF00271 Helicase conserved C-terminal domain Tresu_1736 PF04434 SWIM zinc finger Tresu_1747 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Tresu_1750 PF00437 Type II/IV secretion system protein Tresu_1753 PF02534 Type IV secretory system Conjugative DNA transfer Tresu_1773 PF01131 DNA topoisomerase Tresu_1773 PF01751 Toprim domain Tresu_1774 PF13936 Helix-turn-helix domain Tresu_1775 PF00464 Serine hydroxymethyltransferase Tresu_1792 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tresu_1792 PF00703 Glycosyl hydrolases family 2 Tresu_1792 PF16355 Domain of unknown function (DUF4982) Tresu_1792 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Tresu_1792 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tresu_1793 PF00962 Adenosine/AMP deaminase Tresu_1794 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Tresu_1797 PF00849 RNA pseudouridylate synthase Tresu_1797 PF01479 S4 domain Tresu_1798 PF03193 RsgA GTPase Tresu_1799 PF00009 Elongation factor Tu GTP binding domain Tresu_1799 PF03764 Elongation factor G, domain IV Tresu_1799 PF14492 Elongation Factor G, domain II Tresu_1799 PF00679 Elongation factor G C-terminus Tresu_1799 PF03144 Elongation factor Tu domain 2 Tresu_1800 PF00072 Response regulator receiver domain Tresu_1801 PF00795 Carbon-nitrogen hydrolase Tresu_1801 PF02540 NAD synthase Tresu_1802 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Tresu_1805 PF00072 Response regulator receiver domain Tresu_1805 PF02954 Bacterial regulatory protein, Fis family Tresu_1805 PF00158 Sigma-54 interaction domain Tresu_1806 PF00575 S1 RNA binding domain Tresu_1807 PF01479 S4 domain Tresu_1807 PF00849 RNA pseudouridylate synthase Tresu_1808 PF04079 Segregation and condensation complex subunit ScpB Tresu_1809 PF02616 Segregation and condensation protein ScpA Tresu_1810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tresu_1811 PF00154 recA bacterial DNA recombination protein Tresu_1812 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_1813 PF13187 4Fe-4S dicluster domain Tresu_1814 PF04225 Opacity-associated protein A LysM-like domain Tresu_1814 PF01551 Peptidase family M23 Tresu_1820 PF06421 GTP-binding protein LepA C-terminus Tresu_1820 PF00679 Elongation factor G C-terminus Tresu_1820 PF14492 Elongation Factor G, domain II Tresu_1820 PF00009 Elongation factor Tu GTP binding domain Tresu_1820 PF03144 Elongation factor Tu domain 2 Tresu_1821 PF17820 PDZ domain Tresu_1821 PF13180 PDZ domain Tresu_1823 PF01171 PP-loop family Tresu_1824 PF14693 Ribosomal protein TL5, C-terminal domain Tresu_1824 PF01386 Ribosomal L25p family Tresu_1825 PF04026 SpoVG Tresu_1826 PF00288 GHMP kinases N terminal domain Tresu_1826 PF08544 GHMP kinases C terminal Tresu_1831 PF02463 RecF/RecN/SMC N terminal domain Tresu_1832 PF01513 ATP-NAD kinase Tresu_1833 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1834 PF01584 CheW-like domain Tresu_1835 PF00156 Phosphoribosyl transferase domain Tresu_1836 PF05188 MutS domain II Tresu_1836 PF01624 MutS domain I Tresu_1836 PF05192 MutS domain III Tresu_1836 PF00488 MutS domain V Tresu_1836 PF05190 MutS family domain IV Tresu_1838 PF01103 Surface antigen Tresu_1838 PF07244 Surface antigen variable number repeat Tresu_1840 PF02223 Thymidylate kinase Tresu_1843 PF02219 Methylenetetrahydrofolate reductase Tresu_1844 PF02574 Homocysteine S-methyltransferase Tresu_1844 PF02310 B12 binding domain Tresu_1844 PF02607 B12 binding domain Tresu_1844 PF02965 Vitamin B12 dependent methionine synthase, activation domain Tresu_1844 PF00809 Pterin binding enzyme Tresu_1846 PF01238 Phosphomannose isomerase type I Tresu_1848 PF01048 Phosphorylase superfamily Tresu_1849 PF00156 Phosphoribosyl transferase domain Tresu_1851 PF01435 Peptidase family M48 Tresu_1852 PF02743 Cache domain Tresu_1852 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_1852 PF00672 HAMP domain Tresu_1853 PF01842 ACT domain Tresu_1853 PF02153 Prephenate dehydrogenase Tresu_1854 PF18152 DAHP synthase ferredoxin-like domain Tresu_1854 PF00793 DAHP synthetase I family Tresu_1855 PF01361 Tautomerase enzyme Tresu_1856 PF01053 Cys/Met metabolism PLP-dependent enzyme Tresu_1857 PF00773 RNB domain Tresu_1858 PF17912 MalK OB fold domain Tresu_1858 PF00005 ABC transporter Tresu_1858 PF03459 TOBE domain Tresu_1860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1860 PF02743 Cache domain Tresu_1860 PF00672 HAMP domain Tresu_1862 PF01761 3-dehydroquinate synthase Tresu_1863 PF00266 Aminotransferase class-V Tresu_1865 PF01351 Ribonuclease HII Tresu_1867 PF00156 Phosphoribosyl transferase domain Tresu_1871 PF00834 Ribulose-phosphate 3 epimerase family Tresu_1875 PF01791 DeoC/LacD family aldolase Tresu_1876 PF01022 Bacterial regulatory protein, arsR family Tresu_1880 PF00919 Uncharacterized protein family UPF0004 Tresu_1880 PF04055 Radical SAM superfamily Tresu_1883 PF00271 Helicase conserved C-terminal domain Tresu_1883 PF00270 DEAD/DEAH box helicase Tresu_1886 PF00009 Elongation factor Tu GTP binding domain Tresu_1886 PF00679 Elongation factor G C-terminus Tresu_1886 PF14492 Elongation Factor G, domain II Tresu_1886 PF03764 Elongation factor G, domain IV Tresu_1886 PF03144 Elongation factor Tu domain 2 Tresu_1892 PF01022 Bacterial regulatory protein, arsR family Tresu_1893 PF00293 NUDIX domain Tresu_1901 PF03600 Citrate transporter Tresu_1905 PF13181 Tetratricopeptide repeat Tresu_1905 PF01435 Peptidase family M48 Tresu_1921 PF07690 Major Facilitator Superfamily Tresu_1926 PF01076 Plasmid recombination enzyme Tresu_1928 PF00239 Resolvase, N terminal domain Tresu_1928 PF02796 Helix-turn-helix domain of resolvase Tresu_1932 PF00589 Phage integrase family Tresu_1932 PF02920 DNA binding domain of tn916 integrase Tresu_1933 PF09035 Excisionase from transposon Tn916 Tresu_1936 PF04055 Radical SAM superfamily Tresu_1937 PF08241 Methyltransferase domain Tresu_1939 PF00009 Elongation factor Tu GTP binding domain Tresu_1939 PF03764 Elongation factor G, domain IV Tresu_1939 PF14492 Elongation Factor G, domain II Tresu_1939 PF00679 Elongation factor G C-terminus Tresu_1941 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Tresu_1942 PF03466 LysR substrate binding domain Tresu_1942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_1946 PF02779 Transketolase, pyrimidine binding domain Tresu_1946 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tresu_1946 PF02780 Transketolase, C-terminal domain Tresu_1948 PF14268 YoaP-like Tresu_1948 PF00583 Acetyltransferase (GNAT) family Tresu_1951 PF08534 Redoxin Tresu_1953 PF00293 NUDIX domain Tresu_1956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1956 PF05384 Sensor protein DegS Tresu_1956 PF07730 Histidine kinase Tresu_1958 PF00196 Bacterial regulatory proteins, luxR family Tresu_1958 PF00072 Response regulator receiver domain Tresu_1962 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Tresu_1967 PF05384 Sensor protein DegS Tresu_1967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1967 PF07730 Histidine kinase Tresu_1974 PF13186 Iron-sulfur cluster-binding domain Tresu_1980 PF02661 Fic/DOC family Tresu_1980 PF12728 Helix-turn-helix domain Tresu_1987 PF00145 C-5 cytosine-specific DNA methylase Tresu_1988 PF09564 NgoBV restriction endonuclease Tresu_1989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_1989 PF03466 LysR substrate binding domain Tresu_1991 PF13808 DDE_Tnp_1-associated Tresu_1991 PF01609 Transposase DDE domain Tresu_1995 PF01609 Transposase DDE domain Tresu_1995 PF13808 DDE_Tnp_1-associated Tresu_1999 PF07730 Histidine kinase Tresu_1999 PF13492 GAF domain Tresu_1999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_2002 PF13173 AAA domain Tresu_2002 PF13635 Domain of unknown function (DUF4143) Tresu_2003 PF08212 Lipocalin-like domain Tresu_2004 PF13091 PLD-like domain Tresu_2004 PF13087 AAA domain Tresu_2007 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Tresu_2007 PF01676 Metalloenzyme superfamily Tresu_2010 PF16353 Domain of unknown function(DUF4981) Tresu_2010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tresu_2010 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tresu_2010 PF02929 Beta galactosidase small chain Tresu_2010 PF00703 Glycosyl hydrolases family 2 Tresu_2011 PF13416 Bacterial extracellular solute-binding protein Tresu_2012 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2013 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2015 PF00005 ABC transporter Tresu_2019 PF12849 PBP superfamily domain Tresu_2020 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2021 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2022 PF00005 ABC transporter Tresu_2023 PF01895 PhoU domain Tresu_2026 PF12792 CSS motif domain associated with EAL Tresu_2026 PF00563 EAL domain Tresu_2027 PF00486 Transcriptional regulatory protein, C terminal Tresu_2027 PF00072 Response regulator receiver domain Tresu_2028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_2028 PF00512 His Kinase A (phospho-acceptor) domain Tresu_2028 PF00989 PAS fold Tresu_2028 PF16736 Single Cache-like Tresu_2029 PF04002 RadC-like JAB domain Tresu_2030 PF00595 PDZ domain Tresu_2031 PF02151 UvrB/uvrC motif Tresu_2031 PF12344 Ultra-violet resistance protein B Tresu_2031 PF00271 Helicase conserved C-terminal domain Tresu_2031 PF17757 UvrB interaction domain Tresu_2031 PF04851 Type III restriction enzyme, res subunit Tresu_2034 PF00830 Ribosomal L28 family Tresu_2036 PF03099 Biotin/lipoate A/B protein ligase family Tresu_2036 PF12706 Beta-lactamase superfamily domain Tresu_2037 PF04545 Sigma-70, region 4 Tresu_2037 PF04539 Sigma-70 region 3 Tresu_2037 PF04542 Sigma-70 region 2 Tresu_2037 PF03979 Sigma-70 factor, region 1.1 Tresu_2037 PF00140 Sigma-70 factor, region 1.2 Tresu_2038 PF01336 OB-fold nucleic acid binding domain Tresu_2038 PF00152 tRNA synthetases class II (D, K and N) Tresu_2042 PF00958 GMP synthase C terminal domain Tresu_2042 PF02540 NAD synthase Tresu_2042 PF00117 Glutamine amidotransferase class-I Tresu_2043 PF03707 Bacterial signalling protein N terminal repeat Tresu_2043 PF00563 EAL domain Tresu_2043 PF00990 Diguanylate cyclase, GGDEF domain Tresu_2048 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2049 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2050 PF00005 ABC transporter Tresu_2051 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_2052 PF00892 EamA-like transporter family Tresu_2053 PF01728 FtsJ-like methyltransferase Tresu_2053 PF18125 RlmM ferredoxin-like domain Tresu_2055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tresu_2055 PF00205 Thiamine pyrophosphate enzyme, central domain Tresu_2055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tresu_2056 PF00920 Dehydratase family Tresu_2057 PF00814 Glycoprotease family Tresu_2059 PF02195 ParB-like nuclease domain Tresu_2059 PF17762 HTH domain found in ParB protein Tresu_2060 PF13614 AAA domain Tresu_2063 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_2063 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tresu_2063 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_2063 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tresu_2064 PF00929 Exonuclease Tresu_2065 PF01554 MatE Tresu_2066 PF05257 CHAP domain Tresu_2066 PF01476 LysM domain Tresu_2067 PF05173 Dihydrodipicolinate reductase, C-terminus Tresu_2067 PF01113 Dihydrodipicolinate reductase, N-terminus Tresu_2068 PF13840 ACT domain Tresu_2068 PF00696 Amino acid kinase family Tresu_2068 PF00742 Homoserine dehydrogenase Tresu_2068 PF03447 Homoserine dehydrogenase, NAD binding domain Tresu_2068 PF01842 ACT domain Tresu_2070 PF00309 Sigma-54 factor, Activator interacting domain (AID) Tresu_2070 PF04963 Sigma-54 factor, core binding domain Tresu_2070 PF04552 Sigma-54, DNA binding domain Tresu_2073 PF02690 Na+/Pi-cotransporter Tresu_2076 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Tresu_2076 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Tresu_2077 PF09285 Elongation factor P, C-terminal Tresu_2077 PF08207 Elongation factor P (EF-P) KOW-like domain Tresu_2077 PF01132 Elongation factor P (EF-P) OB domain Tresu_2079 PF13335 Magnesium chelatase, subunit ChlI C-terminal Tresu_2079 PF01078 Magnesium chelatase, subunit ChlI Tresu_2080 PF00270 DEAD/DEAH box helicase Tresu_2080 PF00271 Helicase conserved C-terminal domain Tresu_2080 PF09382 RQC domain Tresu_2080 PF16124 RecQ zinc-binding Tresu_2080 PF00570 HRDC domain Tresu_2082 PF01702 Queuine tRNA-ribosyltransferase Tresu_2085 PF00692 dUTPase Tresu_2086 PF05193 Peptidase M16 inactive domain Tresu_2086 PF00675 Insulinase (Peptidase family M16) Tresu_2087 PF00575 S1 RNA binding domain Tresu_2087 PF03725 3' exoribonuclease family, domain 2 Tresu_2087 PF01138 3' exoribonuclease family, domain 1 Tresu_2087 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tresu_2087 PF00013 KH domain Tresu_2088 PF00312 Ribosomal protein S15 Tresu_2089 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tresu_2090 PF02033 Ribosome-binding factor A Tresu_2091 PF00009 Elongation factor Tu GTP binding domain Tresu_2091 PF11987 Translation-initiation factor 2 Tresu_2091 PF04760 Translation initiation factor IF-2, N-terminal region Tresu_2092 PF08529 NusA N-terminal domain Tresu_2092 PF13184 NusA-like KH domain Tresu_2092 PF00575 S1 RNA binding domain Tresu_2093 PF02576 RimP N-terminal domain Tresu_2093 PF17384 RimP C-terminal SH3 domain Tresu_2094 PF01609 Transposase DDE domain Tresu_2094 PF13808 DDE_Tnp_1-associated Tresu_2097 PF01343 Peptidase family S49 Tresu_2098 PF02631 RecX family Tresu_2099 PF00380 Ribosomal protein S9/S16 Tresu_2100 PF00572 Ribosomal protein L13 Tresu_2102 PF02915 Rubrerythrin Tresu_2104 PF03591 AzlC protein Tresu_2105 PF00005 ABC transporter Tresu_2105 PF08402 TOBE domain Tresu_2106 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2107 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2111 PF00953 Glycosyl transferase family 4 Tresu_2112 PF04015 Domain of unknown function (DUF362) Tresu_2116 PF00155 Aminotransferase class I and II Tresu_2117 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_2117 PF02861 Clp amino terminal domain, pathogenicity island component Tresu_2117 PF17871 AAA lid domain Tresu_2117 PF07724 AAA domain (Cdc48 subfamily) Tresu_2117 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_2118 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Tresu_2119 PF02151 UvrB/uvrC motif Tresu_2121 PF00005 ABC transporter Tresu_2122 PF12704 MacB-like periplasmic core domain Tresu_2122 PF02687 FtsX-like permease family Tresu_2124 PF00448 SRP54-type protein, GTPase domain Tresu_2124 PF02881 SRP54-type protein, helical bundle domain Tresu_2129 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tresu_2129 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Tresu_2133 PF00916 Sulfate permease family Tresu_2133 PF01740 STAS domain Tresu_2134 PF01926 50S ribosome-binding GTPase Tresu_2134 PF07650 KH domain Tresu_2135 PF06071 Protein of unknown function (DUF933) Tresu_2135 PF01926 50S ribosome-binding GTPase Tresu_2136 PF00849 RNA pseudouridylate synthase Tresu_2138 PF00155 Aminotransferase class I and II Tresu_2138 PF00392 Bacterial regulatory proteins, gntR family Tresu_2139 PF00156 Phosphoribosyl transferase domain Tresu_2140 PF13291 ACT domain Tresu_2140 PF02824 TGS domain Tresu_2140 PF04607 Region found in RelA / SpoT proteins Tresu_2143 PF04204 Homoserine O-succinyltransferase Tresu_2145 PF01555 DNA methylase Tresu_2147 PF02796 Helix-turn-helix domain of resolvase Tresu_2147 PF00239 Resolvase, N terminal domain Tresu_2150 PF02743 Cache domain Tresu_2150 PF00672 HAMP domain Tresu_2150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_2151 PF00478 IMP dehydrogenase / GMP reductase domain Tresu_2151 PF00571 CBS domain Tresu_2153 PF01554 MatE Tresu_2155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tresu_2155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tresu_2156 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tresu_2156 PF14572 Phosphoribosyl synthetase-associated domain Tresu_2159 PF01554 MatE Tresu_2160 PF01063 Amino-transferase class IV Tresu_2163 PF01515 Phosphate acetyl/butaryl transferase Tresu_2166 PF01921 tRNA synthetases class I (K) Tresu_2167 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tresu_2167 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_2167 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_2167 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tresu_2172 PF12848 ABC transporter Tresu_2172 PF00005 ABC transporter Tresu_2176 PF13808 DDE_Tnp_1-associated Tresu_2176 PF01609 Transposase DDE domain Tresu_2178 PF09827 CRISPR associated protein Cas2 Tresu_2179 PF09827 CRISPR associated protein Cas2 Tresu_2180 PF01867 CRISPR associated protein Cas1 Tresu_2189 PF03787 RAMP superfamily Tresu_2191 PF18211 Csm1 subunit domain B Tresu_2191 PF01966 HD domain Tresu_2193 PF01301 Glycosyl hydrolases family 35 Tresu_2195 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2196 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2197 PF13416 Bacterial extracellular solute-binding protein Tresu_2198 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Tresu_2198 PF00356 Bacterial regulatory proteins, lacI family Tresu_2199 PF01081 KDPG and KHG aldolase Tresu_2200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tresu_2200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tresu_2202 PF02554 Carbon starvation protein CstA Tresu_2202 PF13722 5TM C-terminal transporter carbon starvation CstA Tresu_2204 PF00365 Phosphofructokinase Tresu_2205 PF04011 LemA family Tresu_2207 PF01339 CheB methylesterase Tresu_2207 PF00072 Response regulator receiver domain Tresu_2208 PF03705 CheR methyltransferase, all-alpha domain Tresu_2208 PF01739 CheR methyltransferase, SAM binding domain Tresu_2209 PF01551 Peptidase family M23 Tresu_2209 PF01464 Transglycosylase SLT domain Tresu_2209 PF10145 Phage-related minor tail protein Tresu_2210 PF01728 FtsJ-like methyltransferase Tresu_2211 PF00501 AMP-binding enzyme Tresu_2213 PF13411 MerR HTH family regulatory protein Tresu_2214 PF01926 50S ribosome-binding GTPase Tresu_2214 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tresu_2215 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_2215 PF05524 PEP-utilising enzyme, N-terminal Tresu_2215 PF00391 PEP-utilising enzyme, mobile domain Tresu_2216 PF00990 Diguanylate cyclase, GGDEF domain Tresu_2216 PF00072 Response regulator receiver domain Tresu_2219 PF03099 Biotin/lipoate A/B protein ligase family Tresu_2219 PF02237 Biotin protein ligase C terminal domain Tresu_2219 PF08279 HTH domain Tresu_2222 PF02664 S-Ribosylhomocysteinase (LuxS) Tresu_2223 PF13419 Haloacid dehalogenase-like hydrolase Tresu_2224 PF02127 Aminopeptidase I zinc metalloprotease (M18) Tresu_2226 PF02542 YgbB family Tresu_2226 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tresu_2245 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_2246 PF02522 Aminoglycoside 3-N-acetyltransferase Tresu_2263 PF00266 Aminotransferase class-V Tresu_2264 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_2264 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_2264 PF01842 ACT domain Tresu_2265 PF02583 Metal-sensitive transcriptional repressor Tresu_2267 PF00403 Heavy-metal-associated domain Tresu_2269 PF00271 Helicase conserved C-terminal domain Tresu_2269 PF00570 HRDC domain Tresu_2269 PF16124 RecQ zinc-binding Tresu_2269 PF09382 RQC domain Tresu_2269 PF00270 DEAD/DEAH box helicase Tresu_2270 PF00999 Sodium/hydrogen exchanger family Tresu_2271 PF01209 ubiE/COQ5 methyltransferase family Tresu_2272 PF02603 HPr Serine kinase N terminus Tresu_2272 PF07475 HPr Serine kinase C-terminal domain Tresu_2273 PF00381 PTS HPr component phosphorylation site Tresu_2274 PF00717 Peptidase S24-like Tresu_2274 PF01726 LexA DNA binding domain Tresu_2276 PF00163 Ribosomal protein S4/S9 N-terminal domain Tresu_2276 PF01479 S4 domain Tresu_2277 PF07238 PilZ domain Tresu_2281 PF13545 Crp-like helix-turn-helix domain Tresu_2281 PF00027 Cyclic nucleotide-binding domain Tresu_2282 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tresu_2282 PF01565 FAD binding domain Tresu_2283 PF09190 DALR domain Tresu_2283 PF01406 tRNA synthetases class I (C) catalytic domain Tresu_2284 PF08281 Sigma-70, region 4 Tresu_2284 PF04542 Sigma-70 region 2 Tresu_2286 PF02806 Alpha amylase, C-terminal all-beta domain Tresu_2286 PF00128 Alpha amylase, catalytic domain Tresu_2286 PF01833 IPT/TIG domain Tresu_2286 PF00686 Starch binding domain Tresu_2287 PF00696 Amino acid kinase family Tresu_2288 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tresu_2289 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tresu_2289 PF02844 Phosphoribosylglycinamide synthetase, N domain Tresu_2289 PF02843 Phosphoribosylglycinamide synthetase, C domain Tresu_2290 PF02673 Bacitracin resistance protein BacA Tresu_2291 PF02254 TrkA-N domain Tresu_2291 PF02080 TrkA-C domain Tresu_2292 PF02386 Cation transport protein Tresu_2293 PF01039 Carboxyl transferase domain Tresu_2295 PF01145 SPFH domain / Band 7 family Tresu_2296 PF01145 SPFH domain / Band 7 family Tresu_2299 PF01381 Helix-turn-helix Tresu_2303 PF04468 PSP1 C-terminal conserved region Tresu_2306 PF04225 Opacity-associated protein A LysM-like domain Tresu_2306 PF01551 Peptidase family M23 Tresu_2307 PF01026 TatD related DNase Tresu_2308 PF01207 Dihydrouridine synthase (Dus) Tresu_2310 PF01590 GAF domain Tresu_2310 PF00990 Diguanylate cyclase, GGDEF domain Tresu_2310 PF00360 Phytochrome region Tresu_2310 PF00563 EAL domain Tresu_2314 PF01409 tRNA synthetases class II core domain (F) Tresu_2315 PF02743 Cache domain Tresu_2315 PF00672 HAMP domain Tresu_2315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_2316 PF06745 KaiC Tresu_2316 PF18073 Rubredoxin metal binding domain Tresu_2321 PF02511 Thymidylate synthase complementing protein Tresu_2324 PF02371 Transposase IS116/IS110/IS902 family Tresu_2324 PF01548 Transposase Tresu_2325 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Tresu_2328 PF13173 AAA domain Tresu_2328 PF13635 Domain of unknown function (DUF4143) Tresu_2330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tresu_2330 PF00753 Metallo-beta-lactamase superfamily Tresu_2330 PF10996 Beta-Casp domain Tresu_2331 PF04102 SlyX Tresu_2332 PF03006 Haemolysin-III related Tresu_2333 PF02653 Branched-chain amino acid transport system / permease component Tresu_2334 PF00005 ABC transporter Tresu_2335 PF13407 Periplasmic binding protein domain Tresu_2336 PF00113 Enolase, C-terminal TIM barrel domain Tresu_2336 PF03952 Enolase, N-terminal domain Tresu_2340 PF03600 Citrate transporter Tresu_2341 PF00005 ABC transporter Tresu_2347 PF00072 Response regulator receiver domain Tresu_2347 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_2350 PF00596 Class II Aldolase and Adducin N-terminal domain Tresu_2352 PF13407 Periplasmic binding protein domain Tresu_2353 PF00005 ABC transporter Tresu_2354 PF02653 Branched-chain amino acid transport system / permease component Tresu_2355 PF02653 Branched-chain amino acid transport system / permease component Tresu_2356 PF17853 GGDEF-like domain Tresu_2356 PF12833 Helix-turn-helix domain Tresu_2357 PF00700 Bacterial flagellin C-terminal helical region Tresu_2357 PF00669 Bacterial flagellin N-terminal helical region Tresu_2359 PF12833 Helix-turn-helix domain Tresu_2359 PF02805 Metal binding domain of Ada Tresu_2360 PF02441 Flavoprotein Tresu_2360 PF04127 DNA / pantothenate metabolism flavoprotein Tresu_2361 PF00924 Mechanosensitive ion channel Tresu_2364 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tresu_2368 PF02229 Transcriptional Coactivator p15 (PC4) Tresu_2371 PF00293 NUDIX domain Tresu_2373 PF01380 SIS domain Tresu_2375 PF00730 HhH-GPD superfamily base excision DNA repair protein Tresu_2376 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tresu_2376 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tresu_2376 PF02772 S-adenosylmethionine synthetase, central domain Tresu_2378 PF00248 Aldo/keto reductase family Tresu_2381 PF00005 ABC transporter Tresu_2382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_2382 PF03466 LysR substrate binding domain Tresu_2384 PF13808 DDE_Tnp_1-associated Tresu_2384 PF01609 Transposase DDE domain Tresu_2385 PF00348 Polyprenyl synthetase Tresu_2390 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tresu_2390 PF00005 ABC transporter Tresu_2392 PF06971 Putative DNA-binding protein N-terminus Tresu_2392 PF02629 CoA binding domain Tresu_2396 PF00588 SpoU rRNA Methylase family Tresu_2396 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tresu_2397 PF02810 SEC-C motif Tresu_2398 PF00501 AMP-binding enzyme Tresu_2398 PF14535 AMP-binding enzyme C-terminal domain Tresu_2407 PF01202 Shikimate kinase Tresu_2408 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tresu_2412 PF01204 Trehalase Tresu_2413 PF02541 Ppx/GppA phosphatase family Tresu_2414 PF02503 Polyphosphate kinase middle domain Tresu_2414 PF13090 Polyphosphate kinase C-terminal domain 2 Tresu_2414 PF17941 Polyphosphate kinase C-terminal domain 1 Tresu_2414 PF13089 Polyphosphate kinase N-terminal domain Tresu_2415 PF01176 Translation initiation factor 1A / IF-1 Tresu_2416 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tresu_2418 PF00072 Response regulator receiver domain Tresu_2418 PF01339 CheB methylesterase Tresu_2422 PF01613 Flavin reductase like domain Tresu_2423 PF00478 IMP dehydrogenase / GMP reductase domain Tresu_2423 PF00571 CBS domain Tresu_2424 PF00005 ABC transporter Tresu_2425 PF00005 ABC transporter Tresu_2425 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tresu_2426 PF11862 Domain of unknown function (DUF3382) Tresu_2426 PF02653 Branched-chain amino acid transport system / permease component Tresu_2427 PF02653 Branched-chain amino acid transport system / permease component Tresu_2428 PF13458 Periplasmic binding protein Tresu_2430 PF01196 Ribosomal protein L17 Tresu_2431 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tresu_2431 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tresu_2431 PF01000 RNA polymerase Rpb3/RpoA insert domain Tresu_2432 PF00411 Ribosomal protein S11 Tresu_2433 PF00416 Ribosomal protein S13/S18 Tresu_2434 PF00444 Ribosomal protein L36 Tresu_2435 PF00344 SecY translocase Tresu_2436 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Tresu_2437 PF00327 Ribosomal protein L30p/L7e Tresu_2438 PF00333 Ribosomal protein S5, N-terminal domain Tresu_2438 PF03719 Ribosomal protein S5, C-terminal domain Tresu_2439 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Tresu_2440 PF00347 Ribosomal protein L6 Tresu_2441 PF00410 Ribosomal protein S8 Tresu_2442 PF00253 Ribosomal protein S14p/S29e Tresu_2443 PF00673 ribosomal L5P family C-terminus Tresu_2443 PF00281 Ribosomal protein L5 Tresu_2444 PF00467 KOW motif Tresu_2444 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Tresu_2445 PF00238 Ribosomal protein L14p/L23e Tresu_2446 PF00366 Ribosomal protein S17 Tresu_2447 PF00831 Ribosomal L29 protein Tresu_2448 PF00252 Ribosomal protein L16p/L10e Tresu_2449 PF07650 KH domain Tresu_2449 PF00189 Ribosomal protein S3, C-terminal domain Tresu_2450 PF00237 Ribosomal protein L22p/L17e Tresu_2451 PF00203 Ribosomal protein S19 Tresu_2452 PF00181 Ribosomal Proteins L2, RNA binding domain Tresu_2452 PF03947 Ribosomal Proteins L2, C-terminal domain Tresu_2453 PF00276 Ribosomal protein L23 Tresu_2454 PF00573 Ribosomal protein L4/L1 family Tresu_2455 PF00297 Ribosomal protein L3 Tresu_2456 PF00338 Ribosomal protein S10p/S20e Tresu_2457 PF03143 Elongation factor Tu C-terminal domain Tresu_2457 PF03144 Elongation factor Tu domain 2 Tresu_2457 PF00009 Elongation factor Tu GTP binding domain Tresu_2458 PF00177 Ribosomal protein S7p/S5e Tresu_2459 PF00164 Ribosomal protein S12/S23 Tresu_2460 PF00623 RNA polymerase Rpb1, domain 2 Tresu_2460 PF04997 RNA polymerase Rpb1, domain 1 Tresu_2460 PF05000 RNA polymerase Rpb1, domain 4 Tresu_2460 PF04998 RNA polymerase Rpb1, domain 5 Tresu_2460 PF04983 RNA polymerase Rpb1, domain 3 Tresu_2461 PF04563 RNA polymerase beta subunit Tresu_2461 PF04561 RNA polymerase Rpb2, domain 2 Tresu_2461 PF04565 RNA polymerase Rpb2, domain 3 Tresu_2461 PF00562 RNA polymerase Rpb2, domain 6 Tresu_2461 PF04560 RNA polymerase Rpb2, domain 7 Tresu_2461 PF10385 RNA polymerase beta subunit external 1 domain Tresu_2462 PF00542 Ribosomal protein L7/L12 C-terminal domain Tresu_2462 PF16320 Ribosomal protein L7/L12 dimerisation domain Tresu_2463 PF00466 Ribosomal protein L10 Tresu_2464 PF00687 Ribosomal protein L1p/L10e family Tresu_2465 PF00298 Ribosomal protein L11, RNA binding domain Tresu_2465 PF03946 Ribosomal protein L11, N-terminal domain Tresu_2466 PF02357 Transcription termination factor nusG Tresu_2466 PF00467 KOW motif Tresu_2467 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Tresu_2468 PF00471 Ribosomal protein L33 Tresu_2469 PF00132 Bacterial transferase hexapeptide (six repeats) Tresu_2474 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_2476 PF01522 Polysaccharide deacetylase Tresu_2476 PF00457 Glycosyl hydrolases family 11 Tresu_2476 PF03422 Carbohydrate binding module (family 6) Tresu_2479 PF10609 NUBPL iron-transfer P-loop NTPase Tresu_2480 PF01790 Prolipoprotein diacylglyceryl transferase Tresu_2482 PF01808 AICARFT/IMPCHase bienzyme Tresu_2482 PF02142 MGS-like domain Tresu_2483 PF01502 Phosphoribosyl-AMP cyclohydrolase Tresu_2483 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tresu_2484 PF01979 Amidohydrolase family Tresu_2485 PF00990 Diguanylate cyclase, GGDEF domain Tresu_2485 PF00563 EAL domain Tresu_2485 PF03707 Bacterial signalling protein N terminal repeat Tresu_2486 PF08497 Radical SAM N-terminal Tresu_2486 PF04055 Radical SAM superfamily Tresu_2486 PF11842 Domain of unknown function (DUF3362) Tresu_2490 PF01336 OB-fold nucleic acid binding domain Tresu_2490 PF00152 tRNA synthetases class II (D, K and N) Tresu_2490 PF02938 GAD domain Tresu_2491 PF01966 HD domain Tresu_2492 PF00759 Glycosyl hydrolase family 9 Tresu_2492 PF02927 Cellulase N-terminal ig-like domain Tresu_2493 PF02446 4-alpha-glucanotransferase Tresu_2494 PF00356 Bacterial regulatory proteins, lacI family Tresu_2495 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2496 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2498 PF00474 Sodium:solute symporter family Tresu_2500 PF02653 Branched-chain amino acid transport system / permease component Tresu_2501 PF00005 ABC transporter Tresu_2501 PF09383 NIL domain Tresu_2503 PF04452 RNA methyltransferase Tresu_2505 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2506 PF00005 ABC transporter Tresu_2506 PF09383 NIL domain Tresu_2507 PF01479 S4 domain Tresu_2507 PF00849 RNA pseudouridylate synthase Tresu_2509 PF14537 Cytochrome c3 Tresu_2509 PF00890 FAD binding domain Tresu_2511 PF05167 Uncharacterised ACR (DUF711) Tresu_2512 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tresu_2515 PF01252 Signal peptidase (SPase) II Tresu_2516 PF12850 Calcineurin-like phosphoesterase superfamily domain Tresu_2519 PF00588 SpoU rRNA Methylase family Tresu_2520 PF00465 Iron-containing alcohol dehydrogenase Tresu_2522 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tresu_2523 PF17854 FtsK alpha domain Tresu_2523 PF09397 Ftsk gamma domain Tresu_2523 PF01580 FtsK/SpoIIIE family Tresu_2524 PF00704 Glycosyl hydrolases family 18 Tresu_2526 PF03180 NLPA lipoprotein Tresu_2528 PF00155 Aminotransferase class I and II Tresu_2529 PF01037 Lrp/AsnC ligand binding domain Tresu_2530 PF00475 Imidazoleglycerol-phosphate dehydratase Tresu_2531 PF01634 ATP phosphoribosyltransferase Tresu_2531 PF08029 HisG, C-terminal domain Tresu_2532 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Tresu_2533 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Tresu_2533 PF01488 Shikimate / quinate 5-dehydrogenase Tresu_2533 PF08501 Shikimate dehydrogenase substrate binding domain Tresu_2535 PF04851 Type III restriction enzyme, res subunit Tresu_2535 PF00271 Helicase conserved C-terminal domain Tresu_2536 PF02915 Rubrerythrin Tresu_2540 PF01170 Putative RNA methylase family UPF0020 Tresu_2540 PF02926 THUMP domain Tresu_2541 PF01609 Transposase DDE domain Tresu_2541 PF13808 DDE_Tnp_1-associated Tresu_2542 PF03852 DNA mismatch endonuclease Vsr Tresu_2547 PF13977 BetI-type transcriptional repressor, C-terminal Tresu_2547 PF00440 Bacterial regulatory proteins, tetR family Tresu_2549 PF00150 Cellulase (glycosyl hydrolase family 5) Tresu_2550 PF00722 Glycosyl hydrolases family 16 Tresu_2553 PF01381 Helix-turn-helix Tresu_2556 PF00575 S1 RNA binding domain Tresu_2557 PF00293 NUDIX domain Tresu_2558 PF00696 Amino acid kinase family Tresu_2558 PF00583 Acetyltransferase (GNAT) family Tresu_2559 PF03989 DNA gyrase C-terminal domain, beta-propeller Tresu_2559 PF00521 DNA gyrase/topoisomerase IV, subunit A Tresu_2560 PF00204 DNA gyrase B Tresu_2560 PF01751 Toprim domain Tresu_2560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_2560 PF00986 DNA gyrase B subunit, carboxyl terminus Tresu_2617 PF00182 Chitinase class I Tresu_2628 PF04055 Radical SAM superfamily Tresu_2629 PF06480 FtsH Extracellular Tresu_2629 PF01434 Peptidase family M41 Tresu_2629 PF17862 AAA+ lid domain Tresu_2629 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_2653 PF13808 DDE_Tnp_1-associated Tresu_2653 PF01609 Transposase DDE domain Tresu_2682 PF01131 DNA topoisomerase Tresu_2682 PF01751 Toprim domain Tresu_2694 PF13635 Domain of unknown function (DUF4143) Tresu_2694 PF13173 AAA domain Tresu_2695 PF02534 Type IV secretory system Conjugative DNA transfer Tresu_2697 PF00437 Type II/IV secretion system protein Tresu_2701 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Tresu_2716 PF13614 AAA domain Tresu_2720 PF00271 Helicase conserved C-terminal domain Tresu_2720 PF04434 SWIM zinc finger Tresu_2720 PF00176 SNF2 family N-terminal domain