Tresu_0001 PF00308 Bacterial dnaA protein Tresu_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tresu_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tresu_0002 PF02767 DNA polymerase III beta subunit, central domain Tresu_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tresu_0003 PF02463 RecF/RecN/SMC N terminal domain Tresu_0004 PF05258 Tresu_0004 Tresu_0005 PF00468 Ribosomal protein L34 Tresu_0006 PF01809 Tresu_0006 Tresu_0007 PF02096 60Kd inner membrane protein Tresu_0007 PF14849 YidC periplasmic domain Tresu_0008 PF01424 R3H domain Tresu_0008 PF13083 KH domain Tresu_0008 PF14804 Jag N-terminus Tresu_0010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tresu_0010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tresu_0011 PF00583 Acetyltransferase (GNAT) family Tresu_0013 PF00392 Bacterial regulatory proteins, gntR family Tresu_0014 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_0015 PF01985 CRS1 / YhbY (CRM) domain Tresu_0016 PF09674 Tresu_0016 Tresu_0018 PF00117 Glutamine amidotransferase class-I Tresu_0018 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tresu_0019 PF01678 Diaminopimelate epimerase Tresu_0019 PF02142 MGS-like domain Tresu_0019 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tresu_0019 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tresu_0020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0023 PF09084 NMT1/THI5 like Tresu_0024 PF00005 ABC transporter Tresu_0025 PF01256 Carbohydrate kinase Tresu_0025 PF03853 YjeF-related protein N-terminus Tresu_0026 PF03788 Tresu_0026 Tresu_0027 PF04172 Tresu_0027 Tresu_0028 PF00696 Amino acid kinase family Tresu_0029 PF03807 NADP oxidoreductase coenzyme F420-dependent Tresu_0029 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tresu_0030 PF08445 FR47-like protein Tresu_0031 PF01554 MatE Tresu_0032 PF00691 OmpA family Tresu_0033 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tresu_0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_0034 PF03466 LysR substrate binding domain Tresu_0035 PF01053 Cys/Met metabolism PLP-dependent enzyme Tresu_0036 PF01680 SOR/SNZ family Tresu_0037 PF01174 SNO glutamine amidotransferase family Tresu_0038 PF13091 PLD-like domain Tresu_0039 PF02769 AIR synthase related protein, C-terminal domain Tresu_0039 PF13507 CobB/CobQ-like glutamine amidotransferase domain Tresu_0040 PF13899 Thioredoxin-like Tresu_0041 PF00571 CBS domain Tresu_0041 PF01595 Tresu_0041 Tresu_0041 PF03471 Transporter associated domain Tresu_0042 PF00571 CBS domain Tresu_0042 PF01595 Tresu_0042 Tresu_0042 PF03471 Transporter associated domain Tresu_0043 PF13189 Cytidylate kinase-like family Tresu_0044 PF00849 RNA pseudouridylate synthase Tresu_0045 PF00005 ABC transporter Tresu_0046 PF01032 FecCD transport family Tresu_0047 PF01497 Periplasmic binding protein Tresu_0048 PF00156 Phosphoribosyl transferase domain Tresu_0049 PF06165 Glycosyltransferase family 36 Tresu_0049 PF17167 Tresu_0049 Tresu_0050 PF13416 Bacterial extracellular solute-binding protein Tresu_0051 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0052 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0053 PF04616 Glycosyl hydrolases family 43 Tresu_0054 PF00356 Bacterial regulatory proteins, lacI family Tresu_0054 PF13377 Periplasmic binding protein-like domain Tresu_0055 PF02575 YbaB/EbfC DNA-binding family Tresu_0056 PF02132 RecR protein Tresu_0056 PF13662 Toprim domain Tresu_0059 PF01435 Peptidase family M48 Tresu_0059 PF16491 Tresu_0059 Tresu_0060 PF02527 rRNA small subunit methyltransferase G Tresu_0063 PF01430 Hsp33 protein Tresu_0064 PF00595 PDZ domain (Also known as DHR or GLGF) Tresu_0064 PF03572 Peptidase family S41 Tresu_0065 PF04452 RNA methyltransferase Tresu_0066 PF03808 Tresu_0066 Tresu_0067 PF00158 Sigma-54 interaction domain Tresu_0068 PF00588 SpoU rRNA Methylase family Tresu_0069 PF01740 STAS domain Tresu_0070 PF00815 Histidinol dehydrogenase Tresu_0071 PF01327 Polypeptide deformylase Tresu_0072 PF00551 Formyl transferase Tresu_0072 PF02911 Formyl transferase, C-terminal domain Tresu_0073 PF03793 PASTA domain Tresu_0074 PF00871 Acetokinase family Tresu_0075 PF02073 Thermophilic metalloprotease (M29) Tresu_0076 PF00005 ABC transporter Tresu_0077 PF14498 Glycosyl hydrolase family 65, N-terminal domain Tresu_0078 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tresu_0078 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tresu_0079 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Tresu_0079 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Tresu_0080 PF04055 Radical SAM superfamily Tresu_0080 PF06968 Biotin and Thiamin Synthesis associated domain Tresu_0081 PF02361 Cobalt transport protein Tresu_0082 PF00005 ABC transporter Tresu_0083 PF02632 BioY family Tresu_0085 PF03099 Biotin/lipoate A/B protein ligase family Tresu_0085 PF08279 HTH domain Tresu_0086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_0086 PF03466 LysR substrate binding domain Tresu_0090 PF00294 pfkB family carbohydrate kinase Tresu_0092 PF00892 EamA-like transporter family Tresu_0093 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tresu_0093 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tresu_0094 PF00175 Oxidoreductase NAD-binding domain Tresu_0094 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tresu_0096 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tresu_0096 PF13237 4Fe-4S dicluster domain Tresu_0097 PF02308 Tresu_0097 Tresu_0100 PF13289 Tresu_0100 Tresu_0101 PF01935 Domain of unknown function DUF87 Tresu_0101 PF05872 Tresu_0101 Tresu_0102 PF01554 MatE Tresu_0105 PF14020 Tresu_0105 Tresu_0106 PF01548 Tresu_0106 Tresu_0106 PF02371 Tresu_0106 Tresu_0107 PF14390 Tresu_0107 Tresu_0108 PF10593 Tresu_0108 Tresu_0109 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0110 PF00145 C-5 cytosine-specific DNA methylase Tresu_0111 PF01609 Transposase DDE domain Tresu_0111 PF13808 Tresu_0111 Tresu_0115 PF12636 Tresu_0115 Tresu_0116 PF02579 Dinitrogenase iron-molybdenum cofactor Tresu_0117 PF04237 YjbR Tresu_0118 PF00005 ABC transporter Tresu_0118 PF12848 ABC transporter Tresu_0118 PF16326 Tresu_0118 Tresu_0119 PF02146 Sir2 family Tresu_0121 PF00186 Dihydrofolate reductase Tresu_0122 PF02811 PHP domain Tresu_0123 PF00391 PEP-utilising enzyme, mobile domain Tresu_0123 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tresu_0123 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_0124 PF01381 Helix-turn-helix Tresu_0126 PF12773 Tresu_0126 Tresu_0129 PF00011 Hsp20/alpha crystallin family Tresu_0131 PF01048 Phosphorylase superfamily Tresu_0132 PF00733 Asparagine synthase Tresu_0132 PF13537 Glutamine amidotransferase domain Tresu_0133 PF03692 Tresu_0133 Tresu_0134 PF02588 Tresu_0134 Tresu_0134 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tresu_0135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0136 PF12169 DNA polymerase III subunits gamma and tau domain III Tresu_0136 PF13177 DNA polymerase III, delta subunit Tresu_0137 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tresu_0138 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0139 PF03168 Late embryogenesis abundant protein Tresu_0140 PF00005 ABC transporter Tresu_0140 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tresu_0141 PF00005 ABC transporter Tresu_0141 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tresu_0143 PF03477 ATP cone domain Tresu_0143 PF13597 Anaerobic ribonucleoside-triphosphate reductase Tresu_0144 PF13353 4Fe-4S single cluster domain Tresu_0145 PF00072 Response regulator receiver domain Tresu_0145 PF00196 Bacterial regulatory proteins, luxR family Tresu_0146 PF01850 PIN domain Tresu_0147 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tresu_0148 PF04221 RelB antitoxin Tresu_0151 PF14622 Ribonuclease-III-like Tresu_0154 PF08308 Tresu_0154 Tresu_0158 PF13151 Tresu_0158 Tresu_0159 PF00501 AMP-binding enzyme Tresu_0160 PF00118 TCP-1/cpn60 chaperonin family Tresu_0161 PF01228 Glycine radical Tresu_0161 PF02901 Pyruvate formate lyase Tresu_0163 PF03372 Endonuclease/Exonuclease/phosphatase family Tresu_0166 PF04055 Radical SAM superfamily Tresu_0166 PF13353 4Fe-4S single cluster domain Tresu_0168 PF13487 HD domain Tresu_0169 PF01546 Peptidase family M20/M25/M40 Tresu_0170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tresu_0171 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0171 PF03129 Anticodon binding domain Tresu_0171 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0173 PF00877 NlpC/P60 family Tresu_0174 PF07055 Enoyl reductase FAD binding domain Tresu_0174 PF12241 Trans-2-enoyl-CoA reductase catalytic region Tresu_0174 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Tresu_0175 PF00331 Glycosyl hydrolase family 10 Tresu_0177 PF00356 Bacterial regulatory proteins, lacI family Tresu_0177 PF13377 Periplasmic binding protein-like domain Tresu_0178 PF02677 Tresu_0178 Tresu_0180 PF13303 Tresu_0180 Tresu_0181 PF13200 Tresu_0181 Tresu_0182 PF01926 50S ribosome-binding GTPase Tresu_0182 PF10396 GTP-binding protein TrmE N-terminus Tresu_0182 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Tresu_0185 PF14257 Tresu_0185 Tresu_0186 PF02811 PHP domain Tresu_0187 PF00027 Cyclic nucleotide-binding domain Tresu_0188 PF01613 Flavin reductase like domain Tresu_0189 PF01202 Shikimate kinase Tresu_0190 PF01734 Patatin-like phospholipase Tresu_0192 PF00575 S1 RNA binding domain Tresu_0192 PF09371 Tex-like protein N-terminal domain Tresu_0192 PF12836 Helix-hairpin-helix motif Tresu_0192 PF16921 Tresu_0192 Tresu_0193 PF02384 N-6 DNA Methylase Tresu_0193 PF12161 HsdM N-terminal domain Tresu_0194 PF10543 Tresu_0194 Tresu_0195 PF06250 Tresu_0195 Tresu_0196 PF01420 Type I restriction modification DNA specificity domain Tresu_0200 PF02661 Fic/DOC family Tresu_0200 PF13784 Fic/DOC family N-terminal Tresu_0201 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0201 PF04851 Type III restriction enzyme, res subunit Tresu_0201 PF11867 Tresu_0201 Tresu_0202 PF02535 Tresu_0202 Tresu_0203 PF02321 Outer membrane efflux protein Tresu_0204 PF13533 Biotin-lipoyl like Tresu_0204 PF16576 Tresu_0204 Tresu_0205 PF00873 AcrB/AcrD/AcrF family Tresu_0207 PF00117 Glutamine amidotransferase class-I Tresu_0207 PF06418 CTP synthase N-terminus Tresu_0208 PF00072 Response regulator receiver domain Tresu_0208 PF03861 ANTAR domain Tresu_0209 PF00120 Glutamine synthetase, catalytic domain Tresu_0209 PF03951 Glutamine synthetase, beta-Grasp domain Tresu_0210 PF00120 Glutamine synthetase, catalytic domain Tresu_0210 PF12437 Glutamine synthetase type III N terminal Tresu_0211 PF00188 Cysteine-rich secretory protein family Tresu_0212 PF00535 Glycosyl transferase family 2 Tresu_0213 PF00543 Nitrogen regulatory protein P-II Tresu_0213 PF00909 Ammonium Transporter Family Tresu_0216 PF13173 AAA domain Tresu_0216 PF13635 Tresu_0216 Tresu_0218 PF07804 HipA-like C-terminal domain Tresu_0218 PF13657 HipA N-terminal domain Tresu_0220 PF13407 Periplasmic binding protein domain Tresu_0221 PF00672 HAMP domain Tresu_0221 PF06580 Tresu_0221 Tresu_0222 PF00072 Response regulator receiver domain Tresu_0222 PF12833 Helix-turn-helix domain Tresu_0223 PF13407 Periplasmic binding protein domain Tresu_0224 PF07726 ATPase family associated with various cellular activities (AAA) Tresu_0225 PF01882 Tresu_0225 Tresu_0227 PF00092 von Willebrand factor type A domain Tresu_0228 PF00092 von Willebrand factor type A domain Tresu_0230 PF01713 Smr domain Tresu_0231 PF00226 DnaJ domain Tresu_0232 PF00075 RNase H Tresu_0233 PF03748 Tresu_0233 Tresu_0234 PF01926 50S ribosome-binding GTPase Tresu_0234 PF13167 Tresu_0234 Tresu_0234 PF16360 Tresu_0234 Tresu_0236 PF13279 Thioesterase-like superfamily Tresu_0237 PF17239 Tresu_0237 Tresu_0238 PF01136 Tresu_0238 Tresu_0239 PF06841 Tresu_0239 Tresu_0240 PF14903 Tresu_0240 Tresu_0246 PF16219 Tresu_0246 Tresu_0248 PF01551 Peptidase family M23 Tresu_0248 PF06841 Tresu_0248 Tresu_0252 PF00877 NlpC/P60 family Tresu_0252 PF06841 Tresu_0252 Tresu_0256 PF01717 Cobalamin-independent synthase, Catalytic domain Tresu_0256 PF08267 Cobalamin-independent synthase, N-terminal domain Tresu_0258 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_0258 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_0260 PF00171 Aldehyde dehydrogenase family Tresu_0261 PF01588 Putative tRNA binding domain Tresu_0261 PF03484 tRNA synthetase B5 domain Tresu_0262 PF12762 Tresu_0262 Tresu_0266 PF05954 Phage late control gene D protein (GPD) Tresu_0270 PF05954 Phage late control gene D protein (GPD) Tresu_0275 PF11692 Tresu_0275 Tresu_0278 PF13540 Regulator of chromosome condensation (RCC1) repeat Tresu_0281 PF12762 Tresu_0281 Tresu_0283 PF15607 Tresu_0283 Tresu_0287 PF00436 Single-strand binding protein family Tresu_0289 PF01544 CorA-like Mg2+ transporter protein Tresu_0290 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0292 PF00206 Lyase Tresu_0292 PF08328 Adenylosuccinate lyase C-terminal Tresu_0293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tresu_0294 PF03548 Outer membrane lipoprotein carrier protein LolA Tresu_0295 PF13413 Helix-turn-helix domain Tresu_0296 PF00919 Uncharacterized protein family UPF0004 Tresu_0296 PF04055 Radical SAM superfamily Tresu_0297 PF13245 Part of AAA domain Tresu_0297 PF13361 UvrD-like helicase C-terminal domain Tresu_0298 PF02424 ApbE family Tresu_0299 PF00209 Sodium:neurotransmitter symporter family Tresu_0300 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_0300 PF14848 DNA-binding domain Tresu_0301 PF06114 Domain of unknown function (DUF955) Tresu_0302 PF01381 Helix-turn-helix Tresu_0303 PF00176 SNF2 family N-terminal domain Tresu_0303 PF00271 Helicase conserved C-terminal domain Tresu_0303 PF13091 PLD-like domain Tresu_0304 PF07669 Eco57I restriction-modification methylase Tresu_0304 PF12950 TaqI-like C-terminal specificity domain Tresu_0306 PF13304 AAA domain Tresu_0308 PF15731 Tresu_0308 Tresu_0310 PF07669 Eco57I restriction-modification methylase Tresu_0310 PF12950 TaqI-like C-terminal specificity domain Tresu_0311 PF00239 Resolvase, N terminal domain Tresu_0311 PF02796 Helix-turn-helix domain of resolvase Tresu_0313 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Tresu_0313 PF13306 Leucine rich repeats (6 copies) Tresu_0314 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Tresu_0315 PF13173 AAA domain Tresu_0315 PF13635 Tresu_0315 Tresu_0316 PF01475 Ferric uptake regulator family Tresu_0318 PF01297 Periplasmic solute binding protein family Tresu_0318 PF09223 YodA lipocalin-like domain Tresu_0319 PF02557 D-alanyl-D-alanine carboxypeptidase Tresu_0320 PF00005 ABC transporter Tresu_0323 PF13612 Tresu_0323 Tresu_0326 PF13672 Protein phosphatase 2C Tresu_0327 PF00092 von Willebrand factor type A domain Tresu_0328 PF00069 Protein kinase domain Tresu_0329 PF15616 Tresu_0329 Tresu_0333 PF09455 CRISPR-associated (Cas) DxTHG family Tresu_0335 PF13643 Tresu_0335 Tresu_0336 PF00583 Acetyltransferase (GNAT) family Tresu_0337 PF01661 Macro domain Tresu_0338 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tresu_0338 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tresu_0339 PF00310 Glutamine amidotransferases class-II Tresu_0339 PF01493 GXGXG motif Tresu_0339 PF01645 Conserved region in glutamate synthase Tresu_0339 PF04898 Glutamate synthase central domain Tresu_0340 PF07009 Protein of unknown function (DUF1312) Tresu_0342 PF00365 Phosphofructokinase Tresu_0343 PF01070 FMN-dependent dehydrogenase Tresu_0344 PF12822 Protein of unknown function (DUF3816) Tresu_0345 PF00588 SpoU rRNA Methylase family Tresu_0345 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tresu_0346 PF01569 PAP2 superfamily Tresu_0347 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0347 PF02743 Cache domain Tresu_0348 PF10646 Tresu_0348 Tresu_0350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0350 PF03129 Anticodon binding domain Tresu_0350 PF04073 Aminoacyl-tRNA editing domain Tresu_0351 PF02561 Flagellar protein FliS Tresu_0353 PF00440 Bacterial regulatory proteins, tetR family Tresu_0354 PF00204 DNA gyrase B Tresu_0354 PF00986 DNA gyrase B subunit, carboxyl terminus Tresu_0354 PF01751 Toprim domain Tresu_0354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0355 PF00521 DNA gyrase/topoisomerase IV, subunit A Tresu_0357 PF01205 Uncharacterized protein family UPF0029 Tresu_0359 PF03054 tRNA methyl transferase Tresu_0360 PF01551 Peptidase family M23 Tresu_0364 PF02661 Fic/DOC family Tresu_0364 PF13310 Tresu_0364 Tresu_0367 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_0367 PF03129 Anticodon binding domain Tresu_0368 PF00248 Aldo/keto reductase family Tresu_0371 PF12762 Tresu_0371 Tresu_0372 PF01973 Tresu_0372 Tresu_0373 PF00905 Penicillin binding protein transpeptidase domain Tresu_0373 PF03717 Penicillin-binding Protein dimerisation domain Tresu_0373 PF03793 PASTA domain Tresu_0374 PF00717 Peptidase S24-like Tresu_0375 PF01476 LysM domain Tresu_0375 PF01551 Peptidase family M23 Tresu_0376 PF01522 Polysaccharide deacetylase Tresu_0376 PF07676 WD40-like Beta Propeller Repeat Tresu_0377 PF13599 Pentapeptide repeats (9 copies) Tresu_0378 PF00753 Metallo-beta-lactamase superfamily Tresu_0381 PF10369 Small subunit of acetolactate synthase Tresu_0381 PF13710 ACT domain Tresu_0382 PF00793 DAHP synthetase I family Tresu_0382 PF00800 Prephenate dehydratase Tresu_0383 PF00696 Amino acid kinase family Tresu_0383 PF00742 Homoserine dehydrogenase Tresu_0383 PF01842 ACT domain Tresu_0383 PF03447 Homoserine dehydrogenase, NAD binding domain Tresu_0383 PF13840 ACT domain Tresu_0385 PF00149 Calcineurin-like phosphoesterase Tresu_0386 PF00472 RF-1 domain Tresu_0387 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tresu_0387 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tresu_0388 PF00701 Dihydrodipicolinate synthetase family Tresu_0389 PF00196 Bacterial regulatory proteins, luxR family Tresu_0390 PF01264 Chorismate synthase Tresu_0391 PF00768 D-alanyl-D-alanine carboxypeptidase Tresu_0391 PF07943 Penicillin-binding protein 5, C-terminal domain Tresu_0392 PF01177 Asp/Glu/Hydantoin racemase Tresu_0393 PF00180 Isocitrate/isopropylmalate dehydrogenase Tresu_0394 PF00557 Metallopeptidase family M24 Tresu_0395 PF00226 DnaJ domain Tresu_0396 PF02686 Glu-tRNAGln amidotransferase C subunit Tresu_0397 PF01425 Amidase Tresu_0398 PF02637 GatB domain Tresu_0398 PF02934 GatB/GatE catalytic domain Tresu_0399 PF12672 Tresu_0399 Tresu_0400 PF00258 Flavodoxin Tresu_0401 PF13740 ACT domain Tresu_0402 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_0402 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tresu_0402 PF14310 Fibronectin type III-like domain Tresu_0403 PF07883 Cupin domain Tresu_0403 PF12833 Helix-turn-helix domain Tresu_0404 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_0405 PF00698 Acyl transferase domain Tresu_0406 PF13561 Enoyl-(Acyl carrier protein) reductase Tresu_0407 PF00109 Beta-ketoacyl synthase, N-terminal domain Tresu_0407 PF02801 Beta-ketoacyl synthase, C-terminal domain Tresu_0408 PF07977 FabA-like domain Tresu_0410 PF00334 Nucleoside diphosphate kinase Tresu_0411 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tresu_0411 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tresu_0412 PF00448 SRP54-type protein, GTPase domain Tresu_0412 PF02881 SRP54-type protein, helical bundle domain Tresu_0412 PF02978 Signal peptide binding domain Tresu_0413 PF16561 Tresu_0413 Tresu_0417 PF10016 Tresu_0417 Tresu_0418 PF00155 Aminotransferase class I and II Tresu_0419 PF00155 Aminotransferase class I and II Tresu_0420 PF12850 Calcineurin-like phosphoesterase superfamily domain Tresu_0421 PF00128 Alpha amylase, catalytic domain Tresu_0421 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tresu_0428 PF01609 Transposase DDE domain Tresu_0428 PF13808 Tresu_0428 Tresu_0430 PF13036 Protein of unknown function (DUF3897) Tresu_0432 PF02169 LPP20 lipoprotein Tresu_0433 PF00183 Hsp90 protein Tresu_0433 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0434 PF04607 Region found in RelA / SpoT proteins Tresu_0435 PF01325 Iron dependent repressor, N-terminal DNA binding domain Tresu_0435 PF02742 Iron dependent repressor, metal binding and dimerisation domain Tresu_0436 PF00206 Lyase Tresu_0436 PF14698 Argininosuccinate lyase C-terminal Tresu_0437 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_0438 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0439 PF00005 ABC transporter Tresu_0440 PF00571 CBS domain Tresu_0440 PF01368 DHH family Tresu_0440 PF02833 DHHA2 domain Tresu_0440 PF07085 DRTGG domain Tresu_0442 PF00005 ABC transporter Tresu_0443 PF12679 Tresu_0443 Tresu_0444 PF09822 Tresu_0444 Tresu_0445 PF14238 Tresu_0445 Tresu_0446 PF00849 RNA pseudouridylate synthase Tresu_0447 PF00476 DNA polymerase family A Tresu_0447 PF01367 5'-3' exonuclease, C-terminal SAM fold Tresu_0447 PF01612 3'-5' exonuclease Tresu_0447 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tresu_0448 PF01121 Dephospho-CoA kinase Tresu_0449 PF05036 Sporulation related domain Tresu_0450 PF04073 Aminoacyl-tRNA editing domain Tresu_0451 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tresu_0451 PF10531 SLBB domain Tresu_0451 PF13237 4Fe-4S dicluster domain Tresu_0451 PF13375 RnfC Barrel sandwich hybrid domain Tresu_0452 PF03116 Tresu_0452 Tresu_0453 PF04205 FMN-binding domain Tresu_0454 PF02508 Tresu_0454 Tresu_0455 PF02508 Tresu_0455 Tresu_0456 PF00037 4Fe-4S binding domain Tresu_0456 PF04060 Putative Fe-S cluster Tresu_0456 PF12837 4Fe-4S binding domain Tresu_0458 PF03553 Tresu_0458 Tresu_0459 PF00860 Permease family Tresu_0460 PF14681 Uracil phosphoribosyltransferase Tresu_0461 PF01411 tRNA synthetases class II (A) Tresu_0461 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0462 PF13624 SurA N-terminal domain Tresu_0463 PF01029 NusB family Tresu_0465 PF00166 Chaperonin 10 Kd subunit Tresu_0466 PF00140 Sigma-70 factor, region 1 Tresu_0466 PF04539 Sigma-70 region 3 Tresu_0466 PF04542 Sigma-70 region 2 Tresu_0466 PF04545 Sigma-70, region 4 Tresu_0467 PF00270 DEAD/DEAH box helicase Tresu_0467 PF00271 Helicase conserved C-terminal domain Tresu_0467 PF17191 Tresu_0467 Tresu_0468 PF02325 Tresu_0468 Tresu_0469 PF02811 PHP domain Tresu_0469 PF07733 Bacterial DNA polymerase III alpha subunit Tresu_0469 PF14579 Helix-hairpin-helix motif Tresu_0471 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0471 PF00672 HAMP domain Tresu_0471 PF02743 Cache domain Tresu_0472 PF00665 Integrase core domain Tresu_0475 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0476 PF00395 S-layer homology domain Tresu_0477 PF01225 Mur ligase family, catalytic domain Tresu_0477 PF02875 Mur ligase family, glutamate ligase domain Tresu_0477 PF08245 Mur ligase middle domain Tresu_0478 PF01820 D-ala D-ala ligase N-terminus Tresu_0478 PF07478 D-ala D-ala ligase C-terminus Tresu_0479 PF08245 Mur ligase middle domain Tresu_0482 PF01259 SAICAR synthetase Tresu_0483 PF01226 Formate/nitrite transporter Tresu_0484 PF02446 4-alpha-glucanotransferase Tresu_0485 PF00128 Alpha amylase, catalytic domain Tresu_0486 PF14821 Threonine synthase N terminus Tresu_0488 PF00117 Glutamine amidotransferase class-I Tresu_0489 PF00977 Histidine biosynthesis protein Tresu_0490 PF00224 Pyruvate kinase, barrel domain Tresu_0490 PF02887 Pyruvate kinase, alpha/beta domain Tresu_0491 PF01242 6-pyruvoyl tetrahydropterin synthase Tresu_0494 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tresu_0496 PF00092 von Willebrand factor type A domain Tresu_0498 PF01381 Helix-turn-helix Tresu_0498 PF07883 Cupin domain Tresu_0499 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tresu_0499 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Tresu_0499 PF09989 Tresu_0499 Tresu_0501 PF13174 Tetratricopeptide repeat Tresu_0501 PF13525 Outer membrane lipoprotein Tresu_0503 PF01618 Tresu_0503 Tresu_0504 PF02472 Biopolymer transport protein ExbD/TolR Tresu_0506 PF13419 Haloacid dehalogenase-like hydrolase Tresu_0507 PF01442 Apolipoprotein A1/A4/E domain Tresu_0511 PF00583 Acetyltransferase (GNAT) family Tresu_0513 PF02384 N-6 DNA Methylase Tresu_0513 PF12161 HsdM N-terminal domain Tresu_0514 PF13304 AAA domain Tresu_0515 PF13707 Tresu_0515 Tresu_0516 PF01420 Type I restriction modification DNA specificity domain Tresu_0517 PF01420 Type I restriction modification DNA specificity domain Tresu_0518 PF13166 Tresu_0518 Tresu_0519 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0519 PF04851 Type III restriction enzyme, res subunit Tresu_0519 PF12008 Type I restriction and modification enzyme - subunit R C terminal Tresu_0521 PF16242 Tresu_0521 Tresu_0523 PF13238 AAA domain Tresu_0524 PF03977 Tresu_0524 Tresu_0525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0530 PF00145 C-5 cytosine-specific DNA methylase Tresu_0531 PF07728 AAA domain (dynein-related subfamily) Tresu_0532 PF09563 Tresu_0532 Tresu_0536 PF00330 Aconitase family (aconitate hydratase) Tresu_0536 PF00694 Aconitase C-terminal domain Tresu_0540 PF00145 C-5 cytosine-specific DNA methylase Tresu_0541 PF05315 Tresu_0541 Tresu_0542 PF01381 Helix-turn-helix Tresu_0544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0544 PF07730 Histidine kinase Tresu_0545 PF00072 Response regulator receiver domain Tresu_0545 PF00196 Bacterial regulatory proteins, luxR family Tresu_0546 PF13173 AAA domain Tresu_0546 PF13635 Tresu_0546 Tresu_0547 PF01381 Helix-turn-helix Tresu_0549 PF01467 Cytidylyltransferase Tresu_0550 PF04991 Tresu_0550 Tresu_0551 PF01943 Tresu_0551 Tresu_0552 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Tresu_0554 PF13173 AAA domain Tresu_0554 PF13635 Tresu_0554 Tresu_0556 PF00535 Glycosyl transferase family 2 Tresu_0557 PF00535 Glycosyl transferase family 2 Tresu_0561 PF03235 Tresu_0561 Tresu_0567 PF13304 AAA domain Tresu_0568 PF13707 Tresu_0568 Tresu_0570 PF00271 Helicase conserved C-terminal domain Tresu_0570 PF04851 Type III restriction enzyme, res subunit Tresu_0570 PF13091 PLD-like domain Tresu_0571 PF14384 Tresu_0571 Tresu_0574 PF01381 Helix-turn-helix Tresu_0575 PF13173 AAA domain Tresu_0575 PF13635 Tresu_0575 Tresu_0576 PF00583 Acetyltransferase (GNAT) family Tresu_0577 PF04055 Radical SAM superfamily Tresu_0578 PF02537 Tresu_0578 Tresu_0579 PF00571 CBS domain Tresu_0579 PF03448 MgtE intracellular N domain Tresu_0580 PF12668 Tresu_0580 Tresu_0582 PF13443 Cro/C1-type HTH DNA-binding domain Tresu_0583 PF00271 Helicase conserved C-terminal domain Tresu_0583 PF04851 Type III restriction enzyme, res subunit Tresu_0583 PF08463 Tresu_0583 Tresu_0583 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0584 PF01420 Type I restriction modification DNA specificity domain Tresu_0585 PF02384 N-6 DNA Methylase Tresu_0585 PF12161 HsdM N-terminal domain Tresu_0586 PF02661 Fic/DOC family Tresu_0589 PF01420 Type I restriction modification DNA specificity domain Tresu_0590 PF00072 Response regulator receiver domain Tresu_0593 PF13310 Tresu_0593 Tresu_0594 PF01554 MatE Tresu_0595 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_0596 PF00881 Nitroreductase family Tresu_0597 PF12724 Flavodoxin domain Tresu_0598 PF00440 Bacterial regulatory proteins, tetR family Tresu_0600 PF13302 Acetyltransferase (GNAT) domain Tresu_0601 PF03167 Uracil DNA glycosylase superfamily Tresu_0602 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_0602 PF08264 Anticodon-binding domain of tRNA Tresu_0602 PF09334 tRNA synthetases class I (M) Tresu_0602 PF13603 Leucyl-tRNA synthetase, Domain 2 Tresu_0603 PF01545 Cation efflux family Tresu_0603 PF16916 Tresu_0603 Tresu_0604 PF01207 Dihydrouridine synthase (Dus) Tresu_0605 PF09719 Putative redox-active protein (C_GCAxxG_C_C) Tresu_0606 PF10609 ParA/MinD ATPase like Tresu_0607 PF00953 Glycosyl transferase family 4 Tresu_0608 PF00750 tRNA synthetases class I (R) Tresu_0608 PF03485 Arginyl tRNA synthetase N terminal domain Tresu_0608 PF05746 DALR anticodon binding domain Tresu_0609 PF00285 Citrate synthase Tresu_0610 PF01025 GrpE Tresu_0611 PF00012 Hsp70 protein Tresu_0612 PF00226 DnaJ domain Tresu_0612 PF00684 DnaJ central domain Tresu_0612 PF01556 DnaJ C terminal domain Tresu_0613 PF07228 Stage II sporulation protein E (SpoIIE) Tresu_0614 PF07228 Stage II sporulation protein E (SpoIIE) Tresu_0615 PF01740 STAS domain Tresu_0616 PF02557 D-alanyl-D-alanine carboxypeptidase Tresu_0617 PF13419 Haloacid dehalogenase-like hydrolase Tresu_0618 PF13419 Haloacid dehalogenase-like hydrolase Tresu_0620 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0621 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_0622 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_0622 PF01434 Peptidase family M41 Tresu_0622 PF06480 FtsH Extracellular Tresu_0623 PF00753 Metallo-beta-lactamase superfamily Tresu_0624 PF03880 DbpA RNA binding domain Tresu_0625 PF00583 Acetyltransferase (GNAT) family Tresu_0625 PF03682 Tresu_0625 Tresu_0626 PF00574 Clp protease Tresu_0627 PF03819 MazG nucleotide pyrophosphohydrolase domain Tresu_0628 PF01195 Peptidyl-tRNA hydrolase Tresu_0629 PF12833 Helix-turn-helix domain Tresu_0631 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tresu_0631 PF07683 Cobalamin synthesis protein cobW C-terminal domain Tresu_0632 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0632 PF02743 Cache domain Tresu_0633 PF12705 PD-(D/E)XK nuclease superfamily Tresu_0634 PF00580 UvrD/REP helicase N-terminal domain Tresu_0634 PF12705 PD-(D/E)XK nuclease superfamily Tresu_0634 PF13361 UvrD-like helicase C-terminal domain Tresu_0635 PF01643 Acyl-ACP thioesterase Tresu_0637 PF03942 Tresu_0637 Tresu_0638 PF01165 Ribosomal protein S21 Tresu_0639 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_0639 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tresu_0639 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_0640 PF00293 NUDIX domain Tresu_0641 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_0641 PF14848 DNA-binding domain Tresu_0642 PF06114 Domain of unknown function (DUF955) Tresu_0643 PF01381 Helix-turn-helix Tresu_0645 PF01555 DNA methylase Tresu_0646 PF04851 Type III restriction enzyme, res subunit Tresu_0647 PF02371 Tresu_0647 Tresu_0649 PF00589 Phage integrase family Tresu_0649 PF13495 Phage integrase, N-terminal SAM-like domain Tresu_0654 PF00293 NUDIX domain Tresu_0655 PF04365 Protein of unknown function (DUF497) Tresu_0656 PF14384 Tresu_0656 Tresu_0661 PF08239 Bacterial SH3 domain Tresu_0662 PF05154 Tresu_0662 Tresu_0663 PF10825 Tresu_0663 Tresu_0664 PF10047 Tresu_0664 Tresu_0665 PF01850 PIN domain Tresu_0666 PF00216 Bacterial DNA-binding protein Tresu_0667 PF13443 Cro/C1-type HTH DNA-binding domain Tresu_0668 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_0669 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_0671 PF01555 DNA methylase Tresu_0672 PF13166 Tresu_0672 Tresu_0673 PF01548 Tresu_0673 Tresu_0673 PF02371 Tresu_0673 Tresu_0679 PF05154 Tresu_0679 Tresu_0680 PF10825 Tresu_0680 Tresu_0681 PF10047 Tresu_0681 Tresu_0682 PF01850 PIN domain Tresu_0684 PF01396 Tresu_0684 Tresu_0684 PF08378 Tresu_0684 Tresu_0685 PF13612 Tresu_0685 Tresu_0687 PF01757 Tresu_0687 Tresu_0688 PF01757 Tresu_0688 Tresu_0689 PF13958 Toxin ToxN, type III toxin-antitoxin system Tresu_0693 PF01548 Tresu_0693 Tresu_0693 PF02371 Tresu_0693 Tresu_0694 PF09570 Tresu_0694 Tresu_0695 PF00145 C-5 cytosine-specific DNA methylase Tresu_0699 PF01757 Tresu_0699 Tresu_0701 PF01757 Tresu_0701 Tresu_0702 PF13091 PLD-like domain Tresu_0703 PF00145 C-5 cytosine-specific DNA methylase Tresu_0704 PF09019 EcoRII C terminal Tresu_0704 PF09217 Restriction endonuclease EcoRII, N-terminal Tresu_0705 PF01548 Tresu_0705 Tresu_0705 PF02371 Tresu_0705 Tresu_0707 PF05015 Plasmid maintenance system killer protein Tresu_0708 PF01381 Helix-turn-helix Tresu_0711 PF12762 Tresu_0711 Tresu_0712 PF13308 YARHG domain Tresu_0713 PF00145 C-5 cytosine-specific DNA methylase Tresu_0715 PF01548 Tresu_0715 Tresu_0715 PF02371 Tresu_0715 Tresu_0716 PF01757 Tresu_0716 Tresu_0719 PF13857 Ankyrin repeats (many copies) Tresu_0723 PF13470 Tresu_0723 Tresu_0724 PF01872 RibD C-terminal domain Tresu_0726 PF13699 Tresu_0726 Tresu_0736 PF14903 Tresu_0736 Tresu_0740 PF01548 Tresu_0740 Tresu_0740 PF02371 Tresu_0740 Tresu_0741 PF05154 Tresu_0741 Tresu_0742 PF10825 Tresu_0742 Tresu_0743 PF10047 Tresu_0743 Tresu_0744 PF01850 PIN domain Tresu_0746 PF04014 Antidote-toxin recognition MazE Tresu_0747 PF02452 PemK-like protein Tresu_0749 PF13699 Tresu_0749 Tresu_0751 PF13930 DNA/RNA non-specific endonuclease Tresu_0753 PF14412 Tresu_0753 Tresu_0758 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0761 PF14903 Tresu_0761 Tresu_0762 PF14903 Tresu_0762 Tresu_0765 PF15601 Tresu_0765 Tresu_0767 PF14412 Tresu_0767 Tresu_0771 PF01850 PIN domain Tresu_0775 PF04055 Radical SAM superfamily Tresu_0775 PF13353 4Fe-4S single cluster domain Tresu_0776 PF00005 ABC transporter Tresu_0778 PF01548 Tresu_0778 Tresu_0778 PF02371 Tresu_0778 Tresu_0779 PF05154 Tresu_0779 Tresu_0780 PF14281 Tresu_0780 Tresu_0783 PF01850 PIN domain Tresu_0784 PF00583 Acetyltransferase (GNAT) family Tresu_0785 PF05973 Tresu_0785 Tresu_0786 PF01381 Helix-turn-helix Tresu_0788 PF04402 Protein of unknown function (DUF541) Tresu_0789 PF01548 Tresu_0789 Tresu_0789 PF02371 Tresu_0789 Tresu_0791 PF01872 RibD C-terminal domain Tresu_0796 PF05973 Tresu_0796 Tresu_0797 PF13744 Helix-turn-helix domain Tresu_0798 PF03235 Tresu_0798 Tresu_0799 PF03235 Tresu_0799 Tresu_0799 PF07510 Tresu_0799 Tresu_0800 PF01548 Tresu_0800 Tresu_0800 PF02371 Tresu_0800 Tresu_0801 PF01381 Helix-turn-helix Tresu_0805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tresu_0805 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Tresu_0806 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Tresu_0807 PF08543 Phosphomethylpyrimidine kinase Tresu_0808 PF02581 Thiamine monophosphate synthase/TENI Tresu_0809 PF02110 Hydroxyethylthiazole kinase family Tresu_0812 PF01494 FAD binding domain Tresu_0813 PF13535 ATP-grasp domain Tresu_0814 PF04055 Radical SAM superfamily Tresu_0814 PF13353 4Fe-4S single cluster domain Tresu_0816 PF00293 NUDIX domain Tresu_0818 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_0819 PF00085 Thioredoxin Tresu_0821 PF01134 Glucose inhibited division protein A Tresu_0821 PF13932 GidA associated domain 3 Tresu_0822 PF07456 Tresu_0822 Tresu_0823 PF00557 Metallopeptidase family M24 Tresu_0824 PF03023 Tresu_0824 Tresu_0825 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_0827 PF00849 RNA pseudouridylate synthase Tresu_0827 PF01479 S4 domain Tresu_0828 PF01268 Formate--tetrahydrofolate ligase Tresu_0829 PF00702 haloacid dehalogenase-like hydrolase Tresu_0830 PF00682 HMGL-like Tresu_0830 PF08502 LeuA allosteric (dimerisation) domain Tresu_0831 PF00180 Isocitrate/isopropylmalate dehydrogenase Tresu_0832 PF00072 Response regulator receiver domain Tresu_0832 PF00512 His Kinase A (phospho-acceptor) domain Tresu_0832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0833 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_0833 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_0834 PF01814 Hemerythrin HHE cation binding domain Tresu_0835 PF04023 FeoA domain Tresu_0836 PF04023 FeoA domain Tresu_0837 PF02421 Ferrous iron transport protein B Tresu_0837 PF07664 Tresu_0837 Tresu_0837 PF07670 Nucleoside recognition Tresu_0839 PF01235 Tresu_0839 Tresu_0841 PF04542 Sigma-70 region 2 Tresu_0841 PF08281 Sigma-70, region 4 Tresu_0843 PF00128 Alpha amylase, catalytic domain Tresu_0843 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Tresu_0844 PF00343 Carbohydrate phosphorylase Tresu_0845 PF00892 EamA-like transporter family Tresu_0846 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Tresu_0847 PF01541 GIY-YIG catalytic domain Tresu_0847 PF02151 UvrB/uvrC motif Tresu_0847 PF08459 UvrC Helix-hairpin-helix N-terminal Tresu_0848 PF13385 Concanavalin A-like lectin/glucanases superfamily Tresu_0849 PF00515 Tetratricopeptide repeat Tresu_0849 PF13176 Tetratricopeptide repeat Tresu_0849 PF13181 Tetratricopeptide repeat Tresu_0849 PF13414 TPR repeat Tresu_0849 PF13432 Tetratricopeptide repeat Tresu_0850 PF00731 AIR carboxylase Tresu_0851 PF00156 Phosphoribosyl transferase domain Tresu_0851 PF13537 Glutamine amidotransferase domain Tresu_0855 PF01637 Archaeal ATPase Tresu_0855 PF03008 Tresu_0855 Tresu_0856 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_0856 PF14848 DNA-binding domain Tresu_0858 PF00877 NlpC/P60 family Tresu_0860 PF05598 Tresu_0860 Tresu_0862 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_0864 PF02653 Tresu_0864 Tresu_0865 PF02653 Tresu_0865 Tresu_0866 PF00005 ABC transporter Tresu_0867 PF02608 Basic membrane protein Tresu_0868 PF00665 Integrase core domain Tresu_0872 PF13173 AAA domain Tresu_0873 PF13173 AAA domain Tresu_0873 PF13635 Tresu_0873 Tresu_0874 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_0876 PF13173 AAA domain Tresu_0876 PF13635 Tresu_0876 Tresu_0877 PF06414 Zeta toxin Tresu_0879 PF00586 AIR synthase related protein, N-terminal domain Tresu_0879 PF02769 AIR synthase related protein, C-terminal domain Tresu_0880 PF00551 Formyl transferase Tresu_0881 PF00899 ThiF family Tresu_0882 PF00691 OmpA family Tresu_0883 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0883 PF17202 Tresu_0883 Tresu_0884 PF04277 Tresu_0884 Tresu_0885 PF00364 Biotin-requiring enzyme Tresu_0885 PF00682 HMGL-like Tresu_0885 PF02436 Conserved carboxylase domain Tresu_0886 PF03977 Tresu_0886 Tresu_0889 PF01548 Tresu_0889 Tresu_0889 PF02371 Tresu_0889 Tresu_0891 PF00829 Ribosomal prokaryotic L21 protein Tresu_0892 PF04327 Protein of unknown function (DUF464) Tresu_0893 PF01016 Ribosomal L27 protein Tresu_0894 PF01018 GTP1/OBG Tresu_0894 PF01926 50S ribosome-binding GTPase Tresu_0895 PF01467 Cytidylyltransferase Tresu_0896 PF01966 HD domain Tresu_0897 PF03816 Cell envelope-related transcriptional attenuator domain Tresu_0897 PF13399 LytR cell envelope-related transcriptional attenuator Tresu_0898 PF02410 Oligomerisation domain Tresu_0899 PF01464 Transglycosylase SLT domain Tresu_0900 PF13174 Tetratricopeptide repeat Tresu_0903 PF02699 Preprotein translocase subunit Tresu_0904 PF02355 Protein export membrane protein Tresu_0905 PF02355 Protein export membrane protein Tresu_0906 PF02401 LytB protein Tresu_0908 PF00691 OmpA family Tresu_0908 PF13585 C-terminal domain of CHU protein family Tresu_0908 PF13860 FlgD Ig-like domain Tresu_0909 PF01432 Peptidase family M3 Tresu_0909 PF08439 Oligopeptidase F Tresu_0910 PF08239 Bacterial SH3 domain Tresu_0911 PF00005 ABC transporter Tresu_0911 PF12848 ABC transporter Tresu_0911 PF16326 Tresu_0911 Tresu_0912 PF01370 NAD dependent epimerase/dehydratase family Tresu_0913 PF01546 Peptidase family M20/M25/M40 Tresu_0913 PF07687 Peptidase dimerisation domain Tresu_0914 PF00583 Acetyltransferase (GNAT) family Tresu_0914 PF14898 Tresu_0914 Tresu_0917 PF00072 Response regulator receiver domain Tresu_0917 PF00512 His Kinase A (phospho-acceptor) domain Tresu_0917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_0919 PF00072 Response regulator receiver domain Tresu_0920 PF01609 Transposase DDE domain Tresu_0920 PF13808 Tresu_0920 Tresu_0921 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_0922 PF00082 Subtilase family Tresu_0924 PF01381 Helix-turn-helix Tresu_0924 PF06114 Domain of unknown function (DUF955) Tresu_0925 PF05015 Plasmid maintenance system killer protein Tresu_0926 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_0930 PF01381 Helix-turn-helix Tresu_0932 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_0933 PF00251 Glycosyl hydrolases family 32 N-terminal domain Tresu_0933 PF08244 Glycosyl hydrolases family 32 C terminal Tresu_0934 PF00294 pfkB family carbohydrate kinase Tresu_0936 PF00210 Ferritin-like domain Tresu_0937 PF01880 Desulfoferrodoxin Tresu_0937 PF06397 Desulfoferrodoxin, N-terminal domain Tresu_0942 PF01554 MatE Tresu_0943 PF13480 Acetyltransferase (GNAT) domain Tresu_0944 PF04230 Tresu_0944 Tresu_0945 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Tresu_0945 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Tresu_0945 PF12838 4Fe-4S dicluster domain Tresu_0946 PF01522 Polysaccharide deacetylase Tresu_0947 PF00534 Glycosyl transferases group 1 Tresu_0948 PF14897 Tresu_0948 Tresu_0950 PF00534 Glycosyl transferases group 1 Tresu_0950 PF13439 Glycosyltransferase Family 4 Tresu_0953 PF13711 Tresu_0953 Tresu_0954 PF00534 Glycosyl transferases group 1 Tresu_0954 PF09314 Tresu_0954 Tresu_0955 PF13304 AAA domain Tresu_0956 PF13395 HNH endonuclease Tresu_0957 PF13412 Winged helix-turn-helix DNA-binding Tresu_0959 PF02592 Tresu_0959 Tresu_0960 PF13561 Enoyl-(Acyl carrier protein) reductase Tresu_0961 PF13539 D-alanyl-D-alanine carboxypeptidase Tresu_0962 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_0962 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tresu_0962 PF04060 Putative Fe-S cluster Tresu_0962 PF13187 4Fe-4S dicluster domain Tresu_0963 PF01960 ArgJ family Tresu_0964 PF00696 Amino acid kinase family Tresu_0965 PF00202 Aminotransferase class-III Tresu_0966 PF17239 Tresu_0966 Tresu_0967 PF02578 Multi-copper polyphenol oxidoreductase laccase Tresu_0968 PF00764 Arginosuccinate synthase Tresu_0969 PF00121 Triosephosphate isomerase Tresu_0970 PF02417 Tresu_0970 Tresu_0971 PF02417 Tresu_0971 Tresu_0972 PF14574 Domain of unknown function (DUF4445) Tresu_0973 PF00472 RF-1 domain Tresu_0973 PF03462 PCRF domain Tresu_0974 PF05175 Methyltransferase small domain Tresu_0975 PF01596 O-methyltransferase Tresu_0976 PF00465 Iron-containing alcohol dehydrogenase Tresu_0977 PF01297 Periplasmic solute binding protein family Tresu_0978 PF00005 ABC transporter Tresu_0979 PF00950 Tresu_0979 Tresu_0980 PF13419 Haloacid dehalogenase-like hydrolase Tresu_0981 PF00488 MutS domain V Tresu_0981 PF01713 Smr domain Tresu_0982 PF01316 Arginine repressor, DNA binding domain Tresu_0982 PF02863 Arginine repressor, C-terminal domain Tresu_0984 PF00342 Phosphoglucose isomerase Tresu_0985 PF01026 TatD related DNase Tresu_0988 PF02021 Uncharacterised protein family UPF0102 Tresu_0989 PF01312 FlhB HrpN YscU SpaS Family Tresu_0991 PF01245 Ribosomal protein L19 Tresu_0992 PF01746 tRNA (Guanine-1)-methyltransferase Tresu_0993 PF01782 RimM N-terminal domain Tresu_0994 PF13083 KH domain Tresu_0995 PF00886 Ribosomal protein S16 Tresu_0996 PF00288 GHMP kinases N terminal domain Tresu_0996 PF08544 GHMP kinases C terminal Tresu_0996 PF10509 Galactokinase galactose-binding signature Tresu_0997 PF00013 KH domain Tresu_0997 PF01966 HD domain Tresu_0997 PF12072 Tresu_0997 Tresu_1000 PF03062 Tresu_1000 Tresu_1001 PF00501 AMP-binding enzyme Tresu_1002 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tresu_1002 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tresu_1003 PF00550 Phosphopantetheine attachment site Tresu_1004 PF00535 Glycosyl transferase family 2 Tresu_1005 PF10047 Tresu_1005 Tresu_1007 PF13704 Tresu_1007 Tresu_1008 PF13704 Tresu_1008 Tresu_1010 PF05523 WxcM-like, C-terminal Tresu_1011 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1012 PF00535 Glycosyl transferase family 2 Tresu_1013 PF09586 Tresu_1013 Tresu_1014 PF00892 EamA-like transporter family Tresu_1015 PF00892 EamA-like transporter family Tresu_1016 PF09586 Tresu_1016 Tresu_1019 PF06808 Tresu_1019 Tresu_1020 PF08905 Tresu_1020 Tresu_1021 PF16868 Tresu_1021 Tresu_1025 PF12762 Tresu_1025 Tresu_1029 PF14052 Capsule assembly protein Wzi Tresu_1032 PF01979 Amidohydrolase family Tresu_1032 PF13382 Adenine deaminase C-terminal domain Tresu_1033 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1033 PF02190 ATP-dependent protease La (LON) domain Tresu_1033 PF05362 Lon protease (S16) C-terminal proteolytic domain Tresu_1038 PF00498 FHA domain Tresu_1039 PF00149 Calcineurin-like phosphoesterase Tresu_1040 PF00069 Protein kinase domain Tresu_1042 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Tresu_1043 PF00106 short chain dehydrogenase Tresu_1044 PF00933 Glycosyl hydrolase family 3 N terminal domain Tresu_1045 PF01189 NOL1/NOP2/sun family Tresu_1046 PF01590 GAF domain Tresu_1046 PF01966 HD domain Tresu_1047 PF02639 Tresu_1047 Tresu_1048 PF05164 Cell division protein ZapA Tresu_1050 PF00453 Ribosomal protein L20 Tresu_1051 PF01632 Ribosomal protein L35 Tresu_1052 PF00707 Translation initiation factor IF-3, C-terminal domain Tresu_1052 PF05198 Translation initiation factor IF-3, N-terminal domain Tresu_1054 PF01116 Fructose-bisphosphate aldolase class-II Tresu_1055 PF04620 Tresu_1055 Tresu_1056 PF04620 Tresu_1056 Tresu_1057 PF02156 Glycosyl hydrolase family 26 Tresu_1058 PF01330 RuvA N terminal domain Tresu_1058 PF14520 Helix-hairpin-helix domain Tresu_1059 PF05491 Holliday junction DNA helicase ruvB C-terminus Tresu_1059 PF05496 Holliday junction DNA helicase ruvB N-terminus Tresu_1060 PF02547 Queuosine biosynthesis protein Tresu_1061 PF00941 FAD binding domain in molybdopterin dehydrogenase Tresu_1062 PF00111 2Fe-2S iron-sulfur cluster binding domain Tresu_1063 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Tresu_1064 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1065 PF02629 CoA binding domain Tresu_1065 PF02719 Polysaccharide biosynthesis protein Tresu_1066 PF03477 ATP cone domain Tresu_1068 PF00795 Carbon-nitrogen hydrolase Tresu_1069 PF10509 Galactokinase galactose-binding signature Tresu_1070 PF01975 Survival protein SurE Tresu_1071 PF13181 Tetratricopeptide repeat Tresu_1071 PF13424 Tetratricopeptide repeat Tresu_1071 PF13432 Tetratricopeptide repeat Tresu_1073 PF00817 impB/mucB/samB family Tresu_1073 PF11798 IMS family HHH motif Tresu_1073 PF11799 impB/mucB/samB family C-terminal domain Tresu_1077 PF02390 Putative methyltransferase Tresu_1078 PF00533 BRCA1 C Terminus (BRCT) domain Tresu_1078 PF01653 NAD-dependent DNA ligase adenylation domain Tresu_1078 PF03120 NAD-dependent DNA ligase OB-fold domain Tresu_1079 PF01551 Peptidase family M23 Tresu_1080 PF01368 DHH family Tresu_1080 PF02272 DHHA1 domain Tresu_1081 PF00591 Glycosyl transferase family, a/b domain Tresu_1081 PF02885 Glycosyl transferase family, helical bundle domain Tresu_1081 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Tresu_1082 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_1082 PF14848 DNA-binding domain Tresu_1083 PF02565 Recombination protein O C terminal Tresu_1083 PF11967 Recombination protein O N terminal Tresu_1086 PF01609 Transposase DDE domain Tresu_1086 PF13808 Tresu_1086 Tresu_1088 PF09455 CRISPR-associated (Cas) DxTHG family Tresu_1090 PF00271 Helicase conserved C-terminal domain Tresu_1090 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_1090 PF04851 Type III restriction enzyme, res subunit Tresu_1090 PF08463 Tresu_1090 Tresu_1090 PF13643 Tresu_1090 Tresu_1091 PF12668 Tresu_1091 Tresu_1093 PF01420 Type I restriction modification DNA specificity domain Tresu_1094 PF00589 Phage integrase family Tresu_1094 PF13495 Phage integrase, N-terminal SAM-like domain Tresu_1095 PF01420 Type I restriction modification DNA specificity domain Tresu_1096 PF00589 Phage integrase family Tresu_1096 PF13495 Phage integrase, N-terminal SAM-like domain Tresu_1097 PF01420 Type I restriction modification DNA specificity domain Tresu_1098 PF04326 Divergent AAA domain Tresu_1098 PF13749 ATP-dependent DNA helicase recG C-terminal Tresu_1099 PF02384 N-6 DNA Methylase Tresu_1099 PF12161 HsdM N-terminal domain Tresu_1101 PF02646 Tresu_1101 Tresu_1106 PF01420 Type I restriction modification DNA specificity domain Tresu_1107 PF01420 Type I restriction modification DNA specificity domain Tresu_1109 PF13304 AAA domain Tresu_1110 PF00589 Phage integrase family Tresu_1112 PF01972 Serine dehydrogenase proteinase Tresu_1113 PF01420 Type I restriction modification DNA specificity domain Tresu_1114 PF02384 N-6 DNA Methylase Tresu_1114 PF12161 HsdM N-terminal domain Tresu_1115 PF04851 Type III restriction enzyme, res subunit Tresu_1115 PF08463 Tresu_1115 Tresu_1117 PF07804 HipA-like C-terminal domain Tresu_1120 PF00460 Flagella basal body rod protein Tresu_1120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1121 PF02049 Tresu_1121 Tresu_1122 PF01514 Secretory protein of YscJ/FliF family Tresu_1122 PF08345 Tresu_1122 Tresu_1123 PF01706 FliG C-terminal domain Tresu_1123 PF14841 FliG middle domain Tresu_1123 PF14842 FliG N-terminal domain Tresu_1124 PF02108 Tresu_1124 Tresu_1125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1125 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1126 PF02050 Flagellar FliJ protein Tresu_1127 PF00485 Phosphoribulokinase / Uridine kinase family Tresu_1128 PF02195 ParB-like nuclease domain Tresu_1129 PF00905 Penicillin binding protein transpeptidase domain Tresu_1129 PF00912 Transglycosylase Tresu_1130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_1130 PF01872 RibD C-terminal domain Tresu_1131 PF00677 Lumazine binding domain Tresu_1132 PF00925 GTP cyclohydrolase II Tresu_1132 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tresu_1133 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tresu_1134 PF03129 Anticodon binding domain Tresu_1134 PF13393 Histidyl-tRNA synthetase Tresu_1135 PF03309 Type III pantothenate kinase Tresu_1136 PF03102 NeuB family Tresu_1136 PF08666 SAF domain Tresu_1137 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_1137 PF08264 Anticodon-binding domain of tRNA Tresu_1139 PF13432 Tetratricopeptide repeat Tresu_1141 PF01973 Tresu_1141 Tresu_1142 PF01973 Tresu_1142 Tresu_1144 PF04977 Septum formation initiator Tresu_1145 PF01300 Telomere recombination Tresu_1147 PF01668 SmpB protein Tresu_1149 PF04055 Radical SAM superfamily Tresu_1150 PF02779 Transketolase, pyrimidine binding domain Tresu_1150 PF02780 Transketolase, C-terminal domain Tresu_1150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tresu_1151 PF00809 Pterin binding enzyme Tresu_1152 PF02457 DisA bacterial checkpoint controller nucleotide-binding Tresu_1153 PF07949 YbbR-like protein Tresu_1154 PF01648 4'-phosphopantetheinyl transferase superfamily Tresu_1155 PF09986 Tresu_1155 Tresu_1156 PF01416 tRNA pseudouridine synthase Tresu_1160 PF00293 NUDIX domain Tresu_1163 PF13581 Histidine kinase-like ATPase domain Tresu_1164 PF01740 STAS domain Tresu_1165 PF07228 Stage II sporulation protein E (SpoIIE) Tresu_1165 PF13185 GAF domain Tresu_1167 PF00149 Calcineurin-like phosphoesterase Tresu_1168 PF04471 Restriction endonuclease Tresu_1168 PF13432 Tetratricopeptide repeat Tresu_1170 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 Tresu_1170 PF13181 Tetratricopeptide repeat Tresu_1170 PF13414 TPR repeat Tresu_1170 PF13432 Tetratricopeptide repeat Tresu_1171 PF01119 DNA mismatch repair protein, C-terminal domain Tresu_1171 PF08676 MutL C terminal dimerisation domain Tresu_1171 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1172 PF02609 Exonuclease VII small subunit Tresu_1173 PF02601 Tresu_1173 Tresu_1173 PF13742 Tresu_1173 Tresu_1174 PF13186 Iron-sulfur cluster-binding domain Tresu_1176 PF02348 Cytidylyltransferase Tresu_1176 PF13489 Methyltransferase domain Tresu_1177 PF13535 ATP-grasp domain Tresu_1178 PF01520 N-acetylmuramoyl-L-alanine amidase Tresu_1179 PF10646 Tresu_1179 Tresu_1180 PF04620 Tresu_1180 Tresu_1181 PF00515 Tetratricopeptide repeat Tresu_1181 PF04607 Region found in RelA / SpoT proteins Tresu_1181 PF13181 Tetratricopeptide repeat Tresu_1182 PF06826 Tresu_1182 Tresu_1183 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_1183 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_1186 PF12762 Tresu_1186 Tresu_1189 PF01613 Flavin reductase like domain Tresu_1191 PF13443 Cro/C1-type HTH DNA-binding domain Tresu_1192 PF03235 Tresu_1192 Tresu_1193 PF04851 Type III restriction enzyme, res subunit Tresu_1194 PF13310 Tresu_1194 Tresu_1195 PF01555 DNA methylase Tresu_1199 PF00270 DEAD/DEAH box helicase Tresu_1199 PF00271 Helicase conserved C-terminal domain Tresu_1200 PF00005 ABC transporter Tresu_1200 PF12848 ABC transporter Tresu_1202 PF02163 Peptidase family M50 Tresu_1202 PF13180 PDZ domain Tresu_1203 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tresu_1203 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Tresu_1203 PF13288 DXP reductoisomerase C-terminal domain Tresu_1204 PF01148 Cytidylyltransferase family Tresu_1205 PF01255 Putative undecaprenyl diphosphate synthase Tresu_1206 PF01765 Ribosome recycling factor Tresu_1207 PF00889 Elongation factor TS Tresu_1208 PF00318 Ribosomal protein S2 Tresu_1209 PF02545 Maf-like protein Tresu_1210 PF13646 HEAT repeats Tresu_1212 PF01467 Cytidylyltransferase Tresu_1213 PF01783 Ribosomal L32p protein family Tresu_1214 PF00550 Phosphopantetheine attachment site Tresu_1215 PF00035 Double-stranded RNA binding motif Tresu_1215 PF14622 Ribonuclease-III-like Tresu_1216 PF01743 Poly A polymerase head domain Tresu_1216 PF12627 Probable RNA and SrmB- binding site of polymerase A Tresu_1216 PF13735 tRNA nucleotidyltransferase domain 2 putative Tresu_1217 PF04263 Thiamin pyrophosphokinase, catalytic domain Tresu_1220 PF07736 Chorismate mutase type I Tresu_1221 PF00534 Glycosyl transferases group 1 Tresu_1221 PF08323 Starch synthase catalytic domain Tresu_1222 PF05262 Tresu_1222 Tresu_1224 PF01938 TRAM domain Tresu_1224 PF05958 tRNA (Uracil-5-)-methyltransferase Tresu_1225 PF13419 Haloacid dehalogenase-like hydrolase Tresu_1226 PF01197 Ribosomal protein L31 Tresu_1227 PF13084 Tresu_1227 Tresu_1228 PF10672 S-adenosylmethionine-dependent methyltransferase Tresu_1229 PF13420 Acetyltransferase (GNAT) domain Tresu_1230 PF02016 LD-carboxypeptidase Tresu_1233 PF01381 Helix-turn-helix Tresu_1234 PF00216 Bacterial DNA-binding protein Tresu_1235 PF01250 Ribosomal protein S6 Tresu_1236 PF00436 Single-strand binding protein family Tresu_1237 PF01084 Ribosomal protein S18 Tresu_1238 PF01281 Ribosomal protein L9, N-terminal domain Tresu_1238 PF03948 Ribosomal protein L9, C-terminal domain Tresu_1239 PF00772 DnaB-like helicase N terminal domain Tresu_1239 PF03796 DnaB-like helicase C terminal domain Tresu_1240 PF12706 Beta-lactamase superfamily domain Tresu_1241 PF02618 YceG-like family Tresu_1242 PF01807 CHC2 zinc finger Tresu_1242 PF08275 DNA primase catalytic core, N-terminal domain Tresu_1242 PF13155 Toprim-like Tresu_1243 PF00140 Sigma-70 factor, region 1 Tresu_1243 PF03979 Sigma-70 factor, region 1 Tresu_1243 PF04539 Sigma-70 region 3 Tresu_1243 PF04542 Sigma-70 region 2 Tresu_1243 PF04545 Sigma-70, region 4 Tresu_1244 PF02591 Putative zinc ribbon domain Tresu_1245 PF13181 Tetratricopeptide repeat Tresu_1245 PF13414 TPR repeat Tresu_1246 PF06723 MreB/Mbl protein Tresu_1247 PF04085 rod shape-determining protein MreC Tresu_1248 PF04093 Tresu_1248 Tresu_1249 PF00905 Penicillin binding protein transpeptidase domain Tresu_1249 PF03717 Penicillin-binding Protein dimerisation domain Tresu_1250 PF01098 Tresu_1250 Tresu_1251 PF04055 Radical SAM superfamily Tresu_1251 PF10105 Tresu_1251 Tresu_1252 PF00270 DEAD/DEAH box helicase Tresu_1252 PF00271 Helicase conserved C-terminal domain Tresu_1252 PF02559 CarD-like/TRCF domain Tresu_1252 PF03461 TRCF domain Tresu_1254 PF13240 Tresu_1254 Tresu_1255 PF13419 Haloacid dehalogenase-like hydrolase Tresu_1256 PF00842 Alanine racemase, C-terminal domain Tresu_1256 PF01168 Alanine racemase, N-terminal domain Tresu_1257 PF08245 Mur ligase middle domain Tresu_1259 PF09822 Tresu_1259 Tresu_1260 PF00005 ABC transporter Tresu_1261 PF00753 Metallo-beta-lactamase superfamily Tresu_1261 PF12706 Beta-lactamase superfamily domain Tresu_1263 PF00483 Nucleotidyl transferase Tresu_1264 PF04321 RmlD substrate binding domain Tresu_1266 PF00873 AcrB/AcrD/AcrF family Tresu_1267 PF13533 Biotin-lipoyl like Tresu_1267 PF16576 Tresu_1267 Tresu_1268 PF02321 Outer membrane efflux protein Tresu_1269 PF00440 Bacterial regulatory proteins, tetR family Tresu_1270 PF00849 RNA pseudouridylate synthase Tresu_1271 PF00849 RNA pseudouridylate synthase Tresu_1273 PF01168 Alanine racemase, N-terminal domain Tresu_1274 PF00398 Ribosomal RNA adenine dimethylase Tresu_1275 PF03772 Tresu_1275 Tresu_1277 PF07238 PilZ domain Tresu_1278 PF02517 CAAX protease self-immunity Tresu_1279 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_1279 PF14821 Threonine synthase N terminus Tresu_1280 PF13189 Cytidylate kinase-like family Tresu_1281 PF03755 Tresu_1281 Tresu_1281 PF08340 Tresu_1281 Tresu_1282 PF01225 Mur ligase family, catalytic domain Tresu_1282 PF02875 Mur ligase family, glutamate ligase domain Tresu_1282 PF08245 Mur ligase middle domain Tresu_1284 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tresu_1284 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tresu_1285 PF02311 AraC-like ligand binding domain Tresu_1285 PF12833 Helix-turn-helix domain Tresu_1286 PF00226 DnaJ domain Tresu_1287 PF00072 Response regulator receiver domain Tresu_1287 PF00158 Sigma-54 interaction domain Tresu_1287 PF02954 Bacterial regulatory protein, Fis family Tresu_1288 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1288 PF00989 PAS fold Tresu_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1289 PF13177 DNA polymerase III, delta subunit Tresu_1290 PF02674 Tresu_1290 Tresu_1291 PF03033 Glycosyltransferase family 28 N-terminal domain Tresu_1291 PF04101 Glycosyltransferase family 28 C-terminal domain Tresu_1292 PF00023 Ankyrin repeat Tresu_1292 PF12796 Ankyrin repeats (3 copies) Tresu_1294 PF00005 ABC transporter Tresu_1295 PF00005 ABC transporter Tresu_1296 PF02361 Cobalt transport protein Tresu_1297 PF05697 Bacterial trigger factor protein (TF) Tresu_1297 PF05698 Bacterial trigger factor protein (TF) C-terminus Tresu_1298 PF00574 Clp protease Tresu_1299 PF06689 ClpX C4-type zinc finger Tresu_1299 PF07724 AAA domain (Cdc48 subfamily) Tresu_1299 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_1300 PF00534 Glycosyl transferases group 1 Tresu_1300 PF13439 Glycosyltransferase Family 4 Tresu_1301 PF00270 DEAD/DEAH box helicase Tresu_1301 PF00271 Helicase conserved C-terminal domain Tresu_1302 PF02463 RecF/RecN/SMC N terminal domain Tresu_1305 PF04402 Protein of unknown function (DUF541) Tresu_1306 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tresu_1306 PF02403 Seryl-tRNA synthetase N-terminal domain Tresu_1307 PF01594 Tresu_1307 Tresu_1310 PF01027 Inhibitor of apoptosis-promoting Bax1 Tresu_1311 PF04002 RadC-like JAB domain Tresu_1311 PF04851 Type III restriction enzyme, res subunit Tresu_1311 PF13307 Helicase C-terminal domain Tresu_1312 PF00056 lactate/malate dehydrogenase, NAD binding domain Tresu_1312 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Tresu_1313 PF00206 Lyase Tresu_1313 PF10415 Fumarase C C-terminus Tresu_1314 PF02754 Tresu_1314 Tresu_1315 PF13534 4Fe-4S dicluster domain Tresu_1316 PF00037 4Fe-4S binding domain Tresu_1316 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tresu_1316 PF12838 4Fe-4S dicluster domain Tresu_1317 PF02662 Tresu_1317 Tresu_1318 PF13534 4Fe-4S dicluster domain Tresu_1319 PF17179 Tresu_1319 Tresu_1320 PF00175 Oxidoreductase NAD-binding domain Tresu_1320 PF00970 Oxidoreductase FAD-binding domain Tresu_1320 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tresu_1322 PF00890 FAD binding domain Tresu_1323 PF02743 Cache domain Tresu_1324 PF00535 Glycosyl transferase family 2 Tresu_1328 PF00535 Glycosyl transferase family 2 Tresu_1331 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Tresu_1332 PF01943 Tresu_1332 Tresu_1333 PF04991 Tresu_1333 Tresu_1334 PF01467 Cytidylyltransferase Tresu_1336 PF01381 Helix-turn-helix Tresu_1337 PF01588 Putative tRNA binding domain Tresu_1337 PF08264 Anticodon-binding domain of tRNA Tresu_1337 PF09334 tRNA synthetases class I (M) Tresu_1338 PF02388 FemAB family Tresu_1339 PF03065 Glycosyl hydrolase family 57 Tresu_1339 PF09095 Domain of unknown function (DUF1926) Tresu_1340 PF00037 4Fe-4S binding domain Tresu_1344 PF03116 Tresu_1344 Tresu_1345 PF13375 RnfC Barrel sandwich hybrid domain Tresu_1347 PF02681 Tresu_1347 Tresu_1348 PF00849 RNA pseudouridylate synthase Tresu_1350 PF01743 Poly A polymerase head domain Tresu_1350 PF12627 Probable RNA and SrmB- binding site of polymerase A Tresu_1351 PF12146 Putative lysophospholipase Tresu_1352 PF00579 tRNA synthetases class I (W and Y) Tresu_1353 PF00534 Glycosyl transferases group 1 Tresu_1353 PF08323 Starch synthase catalytic domain Tresu_1354 PF00155 Aminotransferase class I and II Tresu_1355 PF12762 Tresu_1355 Tresu_1357 PF02653 Tresu_1357 Tresu_1358 PF00005 ABC transporter Tresu_1359 PF13407 Periplasmic binding protein domain Tresu_1360 PF00356 Bacterial regulatory proteins, lacI family Tresu_1360 PF13407 Periplasmic binding protein domain Tresu_1361 PF06165 Glycosyltransferase family 36 Tresu_1361 PF17167 Tresu_1361 Tresu_1362 PF12796 Ankyrin repeats (3 copies) Tresu_1362 PF13857 Ankyrin repeats (many copies) Tresu_1363 PF03602 Conserved hypothetical protein 95 Tresu_1365 PF13174 Tetratricopeptide repeat Tresu_1365 PF13176 Tetratricopeptide repeat Tresu_1365 PF13181 Tetratricopeptide repeat Tresu_1365 PF14559 Tetratricopeptide repeat Tresu_1366 PF04055 Radical SAM superfamily Tresu_1368 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_1368 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_1369 PF00330 Aconitase family (aconitate hydratase) Tresu_1370 PF00694 Aconitase C-terminal domain Tresu_1371 PF01978 Sugar-specific transcriptional regulator TrmB Tresu_1372 PF01554 MatE Tresu_1373 PF00128 Alpha amylase, catalytic domain Tresu_1374 PF01055 Glycosyl hydrolases family 31 Tresu_1374 PF13802 Galactose mutarotase-like Tresu_1375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tresu_1376 PF00860 Permease family Tresu_1378 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tresu_1379 PF00005 ABC transporter Tresu_1380 PF03733 Tresu_1380 Tresu_1381 PF01381 Helix-turn-helix Tresu_1384 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Tresu_1384 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Tresu_1384 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tresu_1385 PF00534 Glycosyl transferases group 1 Tresu_1385 PF13439 Glycosyltransferase Family 4 Tresu_1386 PF00669 Bacterial flagellin N-terminal helical region Tresu_1386 PF00700 Bacterial flagellin C-terminal helical region Tresu_1387 PF00669 Bacterial flagellin N-terminal helical region Tresu_1387 PF00700 Bacterial flagellin C-terminal helical region Tresu_1388 PF03646 FlaG protein Tresu_1389 PF02465 Tresu_1389 Tresu_1389 PF07195 Tresu_1389 Tresu_1391 PF07238 PilZ domain Tresu_1393 PF02367 Uncharacterised P-loop hydrolase UPF0079 Tresu_1394 PF00814 Glycoprotease family Tresu_1395 PF02599 Global regulator protein family Tresu_1396 PF02623 FliW protein Tresu_1397 PF00669 Bacterial flagellin N-terminal helical region Tresu_1398 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1398 PF07196 Flagellin hook IN motif Tresu_1400 PF10135 Tresu_1400 Tresu_1401 PF00460 Flagella basal body rod protein Tresu_1401 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1402 PF00460 Flagella basal body rod protein Tresu_1402 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1403 PF00563 EAL domain Tresu_1403 PF00990 GGDEF domain Tresu_1404 PF00483 Nucleotidyl transferase Tresu_1405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1405 PF07497 Rho termination factor, RNA-binding domain Tresu_1405 PF07498 Rho termination factor, N-terminal domain Tresu_1406 PF04519 Tresu_1406 Tresu_1407 PF00216 Bacterial DNA-binding protein Tresu_1408 PF01649 Ribosomal protein S20 Tresu_1410 PF01553 Acyltransferase Tresu_1411 PF07532 Tresu_1411 Tresu_1411 PF07745 Glycosyl hydrolase family 53 Tresu_1412 PF05036 Sporulation related domain Tresu_1414 PF01554 MatE Tresu_1420 PF12784 Tresu_1420 Tresu_1421 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tresu_1421 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tresu_1423 PF01368 DHH family Tresu_1423 PF02272 DHHA1 domain Tresu_1425 PF01609 Transposase DDE domain Tresu_1425 PF13808 Tresu_1425 Tresu_1426 PF01725 Ham1 family Tresu_1427 PF02096 60Kd inner membrane protein Tresu_1428 PF00534 Glycosyl transferases group 1 Tresu_1428 PF13439 Glycosyltransferase Family 4 Tresu_1429 PF02397 Tresu_1429 Tresu_1432 PF04551 GcpE protein Tresu_1433 PF00137 ATP synthase subunit C Tresu_1435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1435 PF01813 ATP synthase subunit D Tresu_1435 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1436 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1436 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1436 PF16886 Tresu_1436 Tresu_1437 PF10962 Tresu_1437 Tresu_1439 PF01263 Aldose 1-epimerase Tresu_1443 PF17131 Tresu_1443 Tresu_1444 PF02687 Tresu_1444 Tresu_1445 PF02687 Tresu_1445 Tresu_1445 PF12704 MacB-like periplasmic core domain Tresu_1446 PF00682 HMGL-like Tresu_1446 PF08502 LeuA allosteric (dimerisation) domain Tresu_1447 PF16314 Tresu_1447 Tresu_1448 PF00675 Insulinase (Peptidase family M16) Tresu_1448 PF05193 Peptidase M16 inactive domain Tresu_1449 PF01812 5-formyltetrahydrofolate cyclo-ligase family Tresu_1450 PF01966 HD domain Tresu_1450 PF13286 Phosphohydrolase-associated domain Tresu_1451 PF03692 Tresu_1451 Tresu_1454 PF07745 Glycosyl hydrolase family 53 Tresu_1455 PF00656 Caspase domain Tresu_1457 PF00656 Caspase domain Tresu_1457 PF08238 Sel1 repeat Tresu_1460 PF14326 Tresu_1460 Tresu_1463 PF01381 Helix-turn-helix Tresu_1464 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_1465 PF00456 Transketolase, thiamine diphosphate binding domain Tresu_1465 PF02779 Transketolase, pyrimidine binding domain Tresu_1465 PF02780 Transketolase, C-terminal domain Tresu_1466 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1468 PF00881 Nitroreductase family Tresu_1469 PF00205 Thiamine pyrophosphate enzyme, central domain Tresu_1469 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tresu_1469 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tresu_1470 PF16258 Tresu_1470 Tresu_1471 PF03065 Glycosyl hydrolase family 57 Tresu_1471 PF09210 Domain of unknown function (DUF1957) Tresu_1472 PF00884 Sulfatase Tresu_1472 PF02096 60Kd inner membrane protein Tresu_1473 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Tresu_1474 PF00155 Aminotransferase class I and II Tresu_1474 PF12804 MobA-like NTP transferase domain Tresu_1475 PF08757 Tresu_1475 Tresu_1476 PF16316 Tresu_1476 Tresu_1477 PF09359 VTC domain Tresu_1478 PF08757 Tresu_1478 Tresu_1479 PF01592 NifU-like N terminal domain Tresu_1480 PF14057 Tresu_1480 Tresu_1482 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1482 PF02861 Clp amino terminal domain Tresu_1482 PF07724 AAA domain (Cdc48 subfamily) Tresu_1482 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_1485 PF00675 Insulinase (Peptidase family M16) Tresu_1485 PF05193 Peptidase M16 inactive domain Tresu_1485 PF08367 Peptidase M16C associated Tresu_1486 PF01706 FliG C-terminal domain Tresu_1486 PF14841 FliG middle domain Tresu_1486 PF14842 FliG N-terminal domain Tresu_1487 PF13180 PDZ domain Tresu_1487 PF13365 Trypsin-like peptidase domain Tresu_1488 PF02659 Tresu_1488 Tresu_1490 PF03590 Aspartate-ammonia ligase Tresu_1491 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tresu_1491 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tresu_1492 PF01223 DNA/RNA non-specific endonuclease Tresu_1493 PF09587 Bacterial capsule synthesis protein PGA_cap Tresu_1494 PF00270 DEAD/DEAH box helicase Tresu_1494 PF00271 Helicase conserved C-terminal domain Tresu_1494 PF04408 Helicase associated domain (HA2) Tresu_1494 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Tresu_1495 PF12784 Tresu_1495 Tresu_1503 PF00406 Adenylate kinase Tresu_1503 PF05191 Adenylate kinase, active site lid Tresu_1504 PF00579 tRNA synthetases class I (W and Y) Tresu_1504 PF01479 S4 domain Tresu_1506 PF01592 NifU-like N terminal domain Tresu_1507 PF00266 Aminotransferase class-V Tresu_1508 PF01458 Uncharacterized protein family (UPF0051) Tresu_1509 PF01458 Uncharacterized protein family (UPF0051) Tresu_1510 PF00005 ABC transporter Tresu_1511 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_1516 PF00005 ABC transporter Tresu_1517 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_1518 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_1519 PF00919 Uncharacterized protein family UPF0004 Tresu_1519 PF01938 TRAM domain Tresu_1519 PF04055 Radical SAM superfamily Tresu_1520 PF16561 Tresu_1520 Tresu_1521 PF02649 Type I GTP cyclohydrolase folE2 Tresu_1522 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tresu_1522 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tresu_1525 PF05496 Holliday junction DNA helicase ruvB N-terminus Tresu_1525 PF12002 MgsA AAA+ ATPase C terminal Tresu_1525 PF16193 Tresu_1525 Tresu_1526 PF05175 Methyltransferase small domain Tresu_1527 PF04055 Radical SAM superfamily Tresu_1527 PF16199 Tresu_1527 Tresu_1528 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tresu_1528 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tresu_1529 PF16363 Tresu_1529 Tresu_1530 PF01501 Glycosyl transferase family 8 Tresu_1531 PF03961 Tresu_1531 Tresu_1531 PF14804 Jag N-terminus Tresu_1532 PF04539 Sigma-70 region 3 Tresu_1532 PF04542 Sigma-70 region 2 Tresu_1532 PF04545 Sigma-70, region 4 Tresu_1534 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tresu_1535 PF00448 SRP54-type protein, GTPase domain Tresu_1536 PF00771 FHIPEP family Tresu_1537 PF01312 FlhB HrpN YscU SpaS Family Tresu_1538 PF01311 Tresu_1538 Tresu_1539 PF01313 Tresu_1539 Tresu_1540 PF00813 Tresu_1540 Tresu_1541 PF04347 Tresu_1541 Tresu_1542 PF01052 Surface presentation of antigens (SPOA) Tresu_1543 PF01052 Surface presentation of antigens (SPOA) Tresu_1543 PF02154 Flagellar motor switch protein FliM Tresu_1544 PF03748 Tresu_1544 Tresu_1545 PF00691 OmpA family Tresu_1545 PF13677 Tresu_1545 Tresu_1546 PF01618 Tresu_1546 Tresu_1547 PF06289 Tresu_1547 Tresu_1548 PF01966 HD domain Tresu_1549 PF00072 Response regulator receiver domain Tresu_1549 PF00486 Transcriptional regulatory protein, C terminal Tresu_1550 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1551 PF01715 IPP transferase Tresu_1552 PF01192 RNA polymerase Rpb6 Tresu_1553 PF00460 Flagella basal body rod protein Tresu_1553 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tresu_1553 PF07559 Flagellar basal body protein FlaE Tresu_1554 PF03963 Tresu_1554 Tresu_1555 PF02120 Flagellar hook-length control protein FliK Tresu_1557 PF00349 Hexokinase Tresu_1557 PF03727 Hexokinase Tresu_1558 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1559 PF00580 UvrD/REP helicase N-terminal domain Tresu_1559 PF13361 UvrD-like helicase C-terminal domain Tresu_1561 PF16363 Tresu_1561 Tresu_1562 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Tresu_1563 PF00483 Nucleotidyl transferase Tresu_1565 PF00717 Peptidase S24-like Tresu_1569 PF01554 MatE Tresu_1570 PF00291 Pyridoxal-phosphate dependent enzyme Tresu_1571 PF02082 Transcriptional regulator Tresu_1572 PF13472 GDSL-like Lipase/Acylhydrolase family Tresu_1573 PF11220 Tresu_1573 Tresu_1574 PF13387 Tresu_1574 Tresu_1575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1575 PF00672 HAMP domain Tresu_1575 PF02743 Cache domain Tresu_1577 PF02568 Thiamine biosynthesis protein (ThiI) Tresu_1577 PF02926 THUMP domain Tresu_1580 PF00534 Glycosyl transferases group 1 Tresu_1580 PF13439 Glycosyltransferase Family 4 Tresu_1581 PF03167 Uracil DNA glycosylase superfamily Tresu_1582 PF00270 DEAD/DEAH box helicase Tresu_1582 PF00271 Helicase conserved C-terminal domain Tresu_1583 PF00501 AMP-binding enzyme Tresu_1583 PF13193 AMP-binding enzyme C-terminal domain Tresu_1584 PF01043 SecA preprotein cross-linking domain Tresu_1584 PF02810 SEC-C motif Tresu_1584 PF07516 SecA Wing and Scaffold domain Tresu_1584 PF07517 SecA DEAD-like domain Tresu_1585 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_1585 PF07724 AAA domain (Cdc48 subfamily) Tresu_1585 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_1586 PF00227 Proteasome subunit Tresu_1587 PF00589 Phage integrase family Tresu_1587 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1588 PF01131 DNA topoisomerase Tresu_1588 PF01396 Tresu_1588 Tresu_1588 PF01751 Toprim domain Tresu_1589 PF02481 DNA recombination-mediator protein A Tresu_1590 PF07719 Tetratricopeptide repeat Tresu_1590 PF14559 Tetratricopeptide repeat Tresu_1591 PF00589 Phage integrase family Tresu_1591 PF02899 Phage integrase, N-terminal SAM-like domain Tresu_1592 PF00091 Tubulin/FtsZ family, GTPase domain Tresu_1592 PF12327 FtsZ family, C-terminal domain Tresu_1593 PF02491 SHS2 domain inserted in FTSA Tresu_1593 PF14450 Cell division protein FtsA Tresu_1594 PF08478 POTRA domain, FtsQ-type Tresu_1595 PF01098 Tresu_1595 Tresu_1596 PF01225 Mur ligase family, catalytic domain Tresu_1596 PF02875 Mur ligase family, glutamate ligase domain Tresu_1596 PF08245 Mur ligase middle domain Tresu_1597 PF04977 Septum formation initiator Tresu_1598 PF01795 MraW methylase family Tresu_1599 PF02381 MraZ protein Tresu_1601 PF02075 Crossover junction endodeoxyribonuclease RuvC Tresu_1602 PF01709 Transcriptional regulator Tresu_1604 PF01548 Tresu_1604 Tresu_1604 PF02371 Tresu_1604 Tresu_1605 PF00849 RNA pseudouridylate synthase Tresu_1607 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1607 PF12728 Helix-turn-helix domain Tresu_1609 PF01047 MarR family Tresu_1611 PF00072 Response regulator receiver domain Tresu_1612 PF13690 Chemotaxis phosphatase CheX Tresu_1613 PF01584 CheW-like domain Tresu_1613 PF01739 CheR methyltransferase, SAM binding domain Tresu_1614 PF01584 CheW-like domain Tresu_1614 PF01627 Hpt domain Tresu_1614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1614 PF02895 Signal transducing histidine kinase, homodimeric domain Tresu_1614 PF07194 P2 response regulator binding domain Tresu_1616 PF00072 Response regulator receiver domain Tresu_1616 PF00486 Transcriptional regulatory protein, C terminal Tresu_1617 PF00582 Universal stress protein family Tresu_1618 PF01813 ATP synthase subunit D Tresu_1619 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1619 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tresu_1620 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tresu_1620 PF16886 Tresu_1620 Tresu_1622 PF01990 ATP synthase (F/14-kDa) subunit Tresu_1623 PF00137 ATP synthase subunit C Tresu_1624 PF01496 V-type ATPase 116kDa subunit family Tresu_1625 PF01992 ATP synthase (C/AC39) subunit Tresu_1627 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_1628 PF03840 Preprotein translocase SecG subunit Tresu_1629 PF13449 Esterase-like activity of phytase Tresu_1630 PF01936 NYN domain Tresu_1632 PF13151 Tresu_1632 Tresu_1633 PF12668 Tresu_1633 Tresu_1634 PF08861 Tresu_1634 Tresu_1634 PF08862 Tresu_1634 Tresu_1636 PF04542 Sigma-70 region 2 Tresu_1636 PF04545 Sigma-70, region 4 Tresu_1638 PF13476 AAA domain Tresu_1640 PF00271 Helicase conserved C-terminal domain Tresu_1640 PF04851 Type III restriction enzyme, res subunit Tresu_1640 PF13091 PLD-like domain Tresu_1641 PF00266 Aminotransferase class-V Tresu_1643 PF13182 Tresu_1643 Tresu_1644 PF01507 Phosphoadenosine phosphosulfate reductase family Tresu_1646 PF14384 Tresu_1646 Tresu_1647 PF04365 Protein of unknown function (DUF497) Tresu_1648 PF00271 Helicase conserved C-terminal domain Tresu_1648 PF04851 Type III restriction enzyme, res subunit Tresu_1649 PF13649 Methyltransferase domain Tresu_1650 PF03352 Methyladenine glycosylase Tresu_1654 PF13151 Tresu_1654 Tresu_1655 PF12668 Tresu_1655 Tresu_1657 PF01026 TatD related DNase Tresu_1659 PF01715 IPP transferase Tresu_1660 PF10672 S-adenosylmethionine-dependent methyltransferase Tresu_1661 PF00162 Phosphoglycerate kinase Tresu_1662 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 Tresu_1662 PF13432 Tetratricopeptide repeat Tresu_1663 PF00571 CBS domain Tresu_1663 PF03471 Transporter associated domain Tresu_1664 PF02130 Uncharacterized protein family UPF0054 Tresu_1665 PF01966 HD domain Tresu_1665 PF07698 Tresu_1665 Tresu_1666 PF02562 PhoH-like protein Tresu_1668 PF00133 tRNA synthetases class I (I, L, M and V) Tresu_1668 PF08264 Anticodon-binding domain of tRNA Tresu_1668 PF10458 Valyl tRNA synthetase tRNA binding arm Tresu_1669 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_1672 PF00293 NUDIX domain Tresu_1673 PF04402 Protein of unknown function (DUF541) Tresu_1675 PF13173 AAA domain Tresu_1675 PF13635 Tresu_1675 Tresu_1676 PF04260 Protein of unknown function (DUF436) Tresu_1677 PF00571 CBS domain Tresu_1677 PF01595 Tresu_1677 Tresu_1677 PF03471 Transporter associated domain Tresu_1682 PF00145 C-5 cytosine-specific DNA methylase Tresu_1685 PF13649 Methyltransferase domain Tresu_1686 PF06300 Tresu_1686 Tresu_1687 PF01555 DNA methylase Tresu_1688 PF00512 His Kinase A (phospho-acceptor) domain Tresu_1688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1689 PF00072 Response regulator receiver domain Tresu_1689 PF00486 Transcriptional regulatory protein, C terminal Tresu_1691 PF01555 DNA methylase Tresu_1694 PF04556 Tresu_1694 Tresu_1696 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_1698 PF02469 Fasciclin domain Tresu_1701 PF01969 Protein of unknown function DUF111 Tresu_1702 PF00731 AIR carboxylase Tresu_1703 PF01171 PP-loop family Tresu_1705 PF01554 MatE Tresu_1706 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1706 PF17200 Tresu_1706 Tresu_1710 PF13614 AAA domain Tresu_1725 PF00436 Single-strand binding protein family Tresu_1732 PF13175 AAA ATPase domain Tresu_1736 PF00176 SNF2 family N-terminal domain Tresu_1736 PF00271 Helicase conserved C-terminal domain Tresu_1736 PF04002 RadC-like JAB domain Tresu_1736 PF07669 Eco57I restriction-modification methylase Tresu_1745 PF04610 Tresu_1745 Tresu_1747 PF03135 Tresu_1747 Tresu_1748 PF05101 Tresu_1748 Tresu_1749 PF04956 Tresu_1749 Tresu_1750 PF00437 Type II/IV secretion system protein Tresu_1753 PF02534 Type IV secretory system Conjugative DNA transfer Tresu_1758 PF08238 Sel1 repeat Tresu_1761 PF03743 Bacterial conjugation TrbI-like protein Tresu_1762 PF03524 Conjugal transfer protein Tresu_1763 PF04335 VirB8 protein Tresu_1767 PF00145 C-5 cytosine-specific DNA methylase Tresu_1773 PF01131 DNA topoisomerase Tresu_1773 PF01751 Toprim domain Tresu_1774 PF00665 Integrase core domain Tresu_1774 PF13936 Helix-turn-helix domain Tresu_1775 PF00464 Serine hydroxymethyltransferase Tresu_1777 PF15738 Tresu_1777 Tresu_1778 PF04221 RelB antitoxin Tresu_1782 PF01850 PIN domain Tresu_1784 PF12796 Ankyrin repeats (3 copies) Tresu_1790 PF12844 Helix-turn-helix domain Tresu_1791 PF13505 Outer membrane protein beta-barrel domain Tresu_1792 PF00703 Glycosyl hydrolases family 2 Tresu_1792 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tresu_1792 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tresu_1793 PF00962 Adenosine/AMP deaminase Tresu_1794 PF00076 RNA recognition motif Tresu_1795 PF04389 Peptidase family M28 Tresu_1796 PF00892 EamA-like transporter family Tresu_1797 PF00849 RNA pseudouridylate synthase Tresu_1798 PF03193 Protein of unknown function, DUF258 Tresu_1799 PF00009 Elongation factor Tu GTP binding domain Tresu_1799 PF00679 Elongation factor G C-terminus Tresu_1799 PF03144 Elongation factor Tu domain 2 Tresu_1799 PF03764 Elongation factor G, domain IV Tresu_1799 PF14492 Elongation Factor G, domain II Tresu_1800 PF00072 Response regulator receiver domain Tresu_1800 PF13487 HD domain Tresu_1801 PF00795 Carbon-nitrogen hydrolase Tresu_1801 PF02540 NAD synthase Tresu_1802 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ Tresu_1804 PF13176 Tetratricopeptide repeat Tresu_1805 PF00158 Sigma-54 interaction domain Tresu_1805 PF01590 GAF domain Tresu_1805 PF02954 Bacterial regulatory protein, Fis family Tresu_1806 PF00575 S1 RNA binding domain Tresu_1806 PF02224 Cytidylate kinase Tresu_1807 PF00849 RNA pseudouridylate synthase Tresu_1807 PF01479 S4 domain Tresu_1808 PF04079 Putative transcriptional regulators (Ypuh-like) Tresu_1809 PF02616 ScpA/B protein Tresu_1810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tresu_1811 PF00154 recA bacterial DNA recombination protein Tresu_1812 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_1813 PF13187 4Fe-4S dicluster domain Tresu_1814 PF01476 LysM domain Tresu_1814 PF01551 Peptidase family M23 Tresu_1816 PF01371 Trp repressor protein Tresu_1817 PF07826 IMP cyclohydrolase-like protein Tresu_1818 PF00639 PPIC-type PPIASE domain Tresu_1818 PF13623 Tresu_1818 Tresu_1819 PF01973 Tresu_1819 Tresu_1820 PF00009 Elongation factor Tu GTP binding domain Tresu_1820 PF00679 Elongation factor G C-terminus Tresu_1820 PF03144 Elongation factor Tu domain 2 Tresu_1820 PF06421 GTP-binding protein LepA C-terminus Tresu_1821 PF00595 PDZ domain (Also known as DHR or GLGF) Tresu_1821 PF13365 Trypsin-like peptidase domain Tresu_1823 PF01171 PP-loop family Tresu_1824 PF01386 Ribosomal L25p family Tresu_1824 PF14693 Ribosomal protein TL5, C-terminal domain Tresu_1825 PF04026 SpoVG Tresu_1826 PF00288 GHMP kinases N terminal domain Tresu_1826 PF08544 GHMP kinases C terminal Tresu_1829 PF13023 HD domain Tresu_1831 PF02463 RecF/RecN/SMC N terminal domain Tresu_1832 PF01513 ATP-NAD kinase Tresu_1833 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tresu_1834 PF01584 CheW-like domain Tresu_1835 PF00156 Phosphoribosyl transferase domain Tresu_1836 PF00488 MutS domain V Tresu_1836 PF01624 MutS domain I Tresu_1836 PF05188 MutS domain II Tresu_1836 PF05190 MutS family domain IV Tresu_1836 PF05192 MutS domain III Tresu_1837 PF03938 Outer membrane protein (OmpH-like) Tresu_1838 PF01103 Surface antigen Tresu_1838 PF07244 Surface antigen variable number repeat Tresu_1840 PF02223 Thymidylate kinase Tresu_1842 PF05670 Tresu_1842 Tresu_1842 PF05833 Fibronectin-binding protein A N-terminus (FbpA) Tresu_1843 PF02219 Methylenetetrahydrofolate reductase Tresu_1844 PF00809 Pterin binding enzyme Tresu_1844 PF02310 B12 binding domain Tresu_1844 PF02574 Homocysteine S-methyltransferase Tresu_1844 PF02607 B12 binding domain Tresu_1846 PF01238 Phosphomannose isomerase type I Tresu_1848 PF01048 Phosphorylase superfamily Tresu_1849 PF00156 Phosphoribosyl transferase domain Tresu_1850 PF08239 Bacterial SH3 domain Tresu_1851 PF01435 Peptidase family M48 Tresu_1852 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_1852 PF05226 Tresu_1852 Tresu_1853 PF02153 Prephenate dehydrogenase Tresu_1854 PF00793 DAHP synthetase I family Tresu_1855 PF01361 Tautomerase enzyme Tresu_1856 PF01053 Cys/Met metabolism PLP-dependent enzyme Tresu_1857 PF00773 RNB domain Tresu_1858 PF00005 ABC transporter Tresu_1858 PF08402 TOBE domain Tresu_1860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_1860 PF00672 HAMP domain Tresu_1861 PF03724 META domain Tresu_1862 PF01761 3-dehydroquinate synthase Tresu_1863 PF00266 Aminotransferase class-V Tresu_1864 PF11680 Protein of unknown function (DUF3276) Tresu_1865 PF01351 Ribonuclease HII Tresu_1866 PF13287 Tresu_1866 Tresu_1867 PF00156 Phosphoribosyl transferase domain Tresu_1870 PF13174 Tetratricopeptide repeat Tresu_1871 PF00834 Ribulose-phosphate 3 epimerase family Tresu_1873 PF01272 Transcription elongation factor, GreA/GreB, C-term Tresu_1873 PF03449 Transcription elongation factor, N-terminal Tresu_1874 PF00753 Metallo-beta-lactamase superfamily Tresu_1875 PF01791 DeoC/LacD family aldolase Tresu_1876 PF01022 Bacterial regulatory protein, arsR family Tresu_1877 PF03176 MMPL family Tresu_1878 PF17131 Tresu_1878 Tresu_1880 PF00919 Uncharacterized protein family UPF0004 Tresu_1880 PF04055 Radical SAM superfamily Tresu_1881 PF13429 Tetratricopeptide repeat Tresu_1881 PF13432 Tetratricopeptide repeat Tresu_1882 PF04519 Tresu_1882 Tresu_1883 PF00270 DEAD/DEAH box helicase Tresu_1883 PF00271 Helicase conserved C-terminal domain Tresu_1883 PF03880 DbpA RNA binding domain Tresu_1886 PF00009 Elongation factor Tu GTP binding domain Tresu_1886 PF00679 Elongation factor G C-terminus Tresu_1886 PF03144 Elongation factor Tu domain 2 Tresu_1886 PF03764 Elongation factor G, domain IV Tresu_1886 PF14492 Elongation Factor G, domain II Tresu_1887 PF06745 KaiC Tresu_1889 PF14196 Tresu_1889 Tresu_1891 PF00403 Heavy-metal-associated domain Tresu_1892 PF01022 Bacterial regulatory protein, arsR family Tresu_1892 PF12833 Helix-turn-helix domain Tresu_1893 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal Tresu_1894 PF00583 Acetyltransferase (GNAT) family Tresu_1895 PF00583 Acetyltransferase (GNAT) family Tresu_1898 PF02698 DUF218 domain Tresu_1901 PF03600 Citrate transporter Tresu_1902 PF14526 Integron-associated effector binding protein Tresu_1903 PF01278 Omptin family Tresu_1904 PF08279 HTH domain Tresu_1904 PF13280 Tresu_1904 Tresu_1905 PF01435 Peptidase family M48 Tresu_1907 PF00440 Bacterial regulatory proteins, tetR family Tresu_1908 PF14358 Tresu_1908 Tresu_1910 PF04015 Tresu_1910 Tresu_1911 PF07883 Cupin domain Tresu_1912 PF00239 Resolvase, N terminal domain Tresu_1912 PF07508 Recombinase Tresu_1912 PF13408 Recombinase zinc beta ribbon domain Tresu_1912 PF14287 Tresu_1912 Tresu_1913 PF14202 Tresu_1913 Tresu_1914 PF01695 IstB-like ATP binding protein Tresu_1915 PF06970 Replication initiator protein A (RepA) N-terminus Tresu_1916 PF14194 Tresu_1916 Tresu_1917 PF03432 Tresu_1917 Tresu_1921 PF05977 Transmembrane secretion effector Tresu_1922 PF12844 Helix-turn-helix domain Tresu_1924 PF14194 Tresu_1924 Tresu_1926 PF01076 Plasmid recombination enzyme Tresu_1928 PF00239 Resolvase, N terminal domain Tresu_1928 PF07508 Recombinase Tresu_1928 PF13408 Recombinase zinc beta ribbon domain Tresu_1929 PF12645 Tresu_1929 Tresu_1932 PF00589 Phage integrase family Tresu_1932 PF02920 DNA binding domain of tn916 integrase Tresu_1933 PF09035 Excisionase from transposon Tn916 Tresu_1934 PF12645 Tresu_1934 Tresu_1935 PF08281 Sigma-70, region 4 Tresu_1936 PF04055 Radical SAM superfamily Tresu_1937 PF13649 Methyltransferase domain Tresu_1938 PF01381 Helix-turn-helix Tresu_1939 PF00009 Elongation factor Tu GTP binding domain Tresu_1939 PF00679 Elongation factor G C-terminus Tresu_1939 PF03764 Elongation factor G, domain IV Tresu_1939 PF14492 Elongation Factor G, domain II Tresu_1940 PF13671 AAA domain Tresu_1941 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Tresu_1942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_1942 PF03466 LysR substrate binding domain Tresu_1943 PF02627 Carboxymuconolactone decarboxylase family Tresu_1944 PF12682 Flavodoxin Tresu_1945 PF04126 Cyclophilin-like Tresu_1946 PF02779 Transketolase, pyrimidine binding domain Tresu_1946 PF02780 Transketolase, C-terminal domain Tresu_1946 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tresu_1947 PF00440 Bacterial regulatory proteins, tetR family Tresu_1948 PF14268 Tresu_1948 Tresu_1949 PF00037 4Fe-4S binding domain Tresu_1949 PF12801 Tresu_1949 Tresu_1951 PF08534 Redoxin Tresu_1953 PF00293 NUDIX domain Tresu_1954 PF08241 Methyltransferase domain Tresu_1956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1957 PF12822 Protein of unknown function (DUF3816) Tresu_1958 PF00072 Response regulator receiver domain Tresu_1958 PF00196 Bacterial regulatory proteins, luxR family Tresu_1962 PF15738 Tresu_1962 Tresu_1963 PF00188 Cysteine-rich secretory protein family Tresu_1965 PF00072 Response regulator receiver domain Tresu_1965 PF00196 Bacterial regulatory proteins, luxR family Tresu_1967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1967 PF07730 Histidine kinase Tresu_1969 PF01637 Archaeal ATPase Tresu_1969 PF03008 Tresu_1969 Tresu_1974 PF04055 Radical SAM superfamily Tresu_1974 PF13186 Iron-sulfur cluster-binding domain Tresu_1974 PF13394 4Fe-4S single cluster domain Tresu_1980 PF02661 Fic/DOC family Tresu_1981 PF01381 Helix-turn-helix Tresu_1983 PF12682 Flavodoxin Tresu_1984 PF07883 Cupin domain Tresu_1985 PF02627 Carboxymuconolactone decarboxylase family Tresu_1987 PF00145 C-5 cytosine-specific DNA methylase Tresu_1988 PF09564 Tresu_1988 Tresu_1989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_1989 PF03466 LysR substrate binding domain Tresu_1991 PF01609 Transposase DDE domain Tresu_1991 PF13808 Tresu_1991 Tresu_1995 PF01609 Transposase DDE domain Tresu_1995 PF13808 Tresu_1995 Tresu_1999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_1999 PF07730 Histidine kinase Tresu_2001 PF13173 AAA domain Tresu_2001 PF13635 Tresu_2001 Tresu_2002 PF13173 AAA domain Tresu_2002 PF13635 Tresu_2002 Tresu_2003 PF08212 Lipocalin-like domain Tresu_2004 PF13086 AAA domain Tresu_2004 PF13087 AAA domain Tresu_2007 PF01676 Metalloenzyme superfamily Tresu_2007 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Tresu_2008 PF00144 Beta-lactamase Tresu_2009 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_2009 PF14848 DNA-binding domain Tresu_2010 PF00703 Glycosyl hydrolases family 2 Tresu_2010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tresu_2010 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tresu_2010 PF02929 Beta galactosidase small chain Tresu_2011 PF13416 Bacterial extracellular solute-binding protein Tresu_2012 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2013 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2014 PF12637 Tresu_2014 Tresu_2015 PF00005 ABC transporter Tresu_2016 PF02653 Tresu_2016 Tresu_2017 PF04392 ABC transporter substrate binding protein Tresu_2018 PF13416 Bacterial extracellular solute-binding protein Tresu_2019 PF12849 PBP superfamily domain Tresu_2020 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2021 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2022 PF00005 ABC transporter Tresu_2023 PF01895 PhoU domain Tresu_2026 PF00563 EAL domain Tresu_2026 PF07228 Stage II sporulation protein E (SpoIIE) Tresu_2027 PF00072 Response regulator receiver domain Tresu_2027 PF00486 Transcriptional regulatory protein, C terminal Tresu_2028 PF00512 His Kinase A (phospho-acceptor) domain Tresu_2028 PF00672 HAMP domain Tresu_2028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_2029 PF04002 RadC-like JAB domain Tresu_2030 PF13180 PDZ domain Tresu_2030 PF13365 Trypsin-like peptidase domain Tresu_2031 PF00271 Helicase conserved C-terminal domain Tresu_2031 PF02151 UvrB/uvrC motif Tresu_2031 PF04851 Type III restriction enzyme, res subunit Tresu_2031 PF12344 Ultra-violet resistance protein B Tresu_2033 PF00395 S-layer homology domain Tresu_2034 PF00830 Ribosomal L28 family Tresu_2036 PF12706 Beta-lactamase superfamily domain Tresu_2037 PF00140 Sigma-70 factor, region 1 Tresu_2037 PF04539 Sigma-70 region 3 Tresu_2037 PF04542 Sigma-70 region 2 Tresu_2037 PF04545 Sigma-70, region 4 Tresu_2038 PF00152 tRNA synthetases class II (D, K and N) Tresu_2038 PF01336 OB-fold nucleic acid binding domain Tresu_2040 PF00027 Cyclic nucleotide-binding domain Tresu_2040 PF03631 Tresu_2040 Tresu_2042 PF00117 Glutamine amidotransferase class-I Tresu_2042 PF00958 GMP synthase C terminal domain Tresu_2042 PF02540 NAD synthase Tresu_2043 PF00563 EAL domain Tresu_2043 PF00990 GGDEF domain Tresu_2044 PF10107 Tresu_2044 Tresu_2046 PF12762 Tresu_2046 Tresu_2048 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2049 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2050 PF00005 ABC transporter Tresu_2051 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tresu_2052 PF00892 EamA-like transporter family Tresu_2053 PF01728 FtsJ-like methyltransferase Tresu_2055 PF00205 Thiamine pyrophosphate enzyme, central domain Tresu_2055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tresu_2055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tresu_2056 PF00920 Dehydratase family Tresu_2057 PF00814 Glycoprotease family Tresu_2058 PF04748 Divergent polysaccharide deacetylase Tresu_2059 PF02195 ParB-like nuclease domain Tresu_2060 PF13614 AAA domain Tresu_2061 PF01554 MatE Tresu_2063 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tresu_2063 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_2063 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tresu_2063 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_2064 PF00929 Exonuclease Tresu_2065 PF01554 MatE Tresu_2066 PF01476 LysM domain Tresu_2066 PF01551 Peptidase family M23 Tresu_2067 PF01113 Dihydrodipicolinate reductase, N-terminus Tresu_2067 PF05173 Dihydrodipicolinate reductase, C-terminus Tresu_2068 PF00696 Amino acid kinase family Tresu_2069 PF06245 Tresu_2069 Tresu_2070 PF00309 Tresu_2070 Tresu_2070 PF04552 Sigma-54, DNA binding domain Tresu_2070 PF04963 Sigma-54 factor, core binding domain Tresu_2071 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tresu_2073 PF01895 PhoU domain Tresu_2073 PF02690 Tresu_2073 Tresu_2075 PF00877 NlpC/P60 family Tresu_2076 PF00821 Phosphoenolpyruvate carboxykinase Tresu_2076 PF17297 Tresu_2076 Tresu_2077 PF01132 Elongation factor P (EF-P) OB domain Tresu_2077 PF08207 Elongation factor P (EF-P) KOW-like domain Tresu_2077 PF09285 Elongation factor P, C-terminal Tresu_2078 PF10093 Tresu_2078 Tresu_2079 PF01078 Magnesium chelatase, subunit ChlI Tresu_2079 PF13335 Tresu_2079 Tresu_2079 PF13541 Subunit ChlI of Mg-chelatase Tresu_2080 PF00270 DEAD/DEAH box helicase Tresu_2080 PF00271 Helicase conserved C-terminal domain Tresu_2080 PF00570 HRDC domain Tresu_2080 PF16124 Tresu_2080 Tresu_2081 PF13646 HEAT repeats Tresu_2082 PF01702 Queuine tRNA-ribosyltransferase Tresu_2083 PF03739 Tresu_2083 Tresu_2084 PF03739 Tresu_2084 Tresu_2085 PF00692 dUTPase Tresu_2086 PF00675 Insulinase (Peptidase family M16) Tresu_2086 PF05193 Peptidase M16 inactive domain Tresu_2087 PF00013 KH domain Tresu_2087 PF00575 S1 RNA binding domain Tresu_2087 PF01138 3' exoribonuclease family, domain 1 Tresu_2087 PF03725 3' exoribonuclease family, domain 2 Tresu_2087 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tresu_2088 PF00312 Ribosomal protein S15 Tresu_2089 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tresu_2089 PF06574 FAD synthetase Tresu_2089 PF16198 Tresu_2089 Tresu_2090 PF02033 Ribosome-binding factor A Tresu_2091 PF00009 Elongation factor Tu GTP binding domain Tresu_2091 PF04760 Translation initiation factor IF-2, N-terminal region Tresu_2091 PF11987 Translation-initiation factor 2 Tresu_2092 PF08529 NusA N-terminal domain Tresu_2092 PF13184 NusA-like KH domain Tresu_2092 PF13248 Tresu_2092 Tresu_2093 PF02576 Uncharacterised BCR, YhbC family COG0779 Tresu_2093 PF17384 Tresu_2093 Tresu_2094 PF01609 Transposase DDE domain Tresu_2094 PF13808 Tresu_2094 Tresu_2095 PF01928 CYTH domain Tresu_2096 PF06161 Tresu_2096 Tresu_2097 PF01343 Peptidase family S49 Tresu_2098 PF02631 RecX family Tresu_2099 PF00380 Ribosomal protein S9/S16 Tresu_2100 PF00572 Ribosomal protein L13 Tresu_2102 PF02915 Rubrerythrin Tresu_2103 PF05437 Tresu_2103 Tresu_2104 PF03591 Tresu_2104 Tresu_2105 PF00005 ABC transporter Tresu_2105 PF08402 TOBE domain Tresu_2106 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2107 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2108 PF13416 Bacterial extracellular solute-binding protein Tresu_2109 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tresu_2111 PF00953 Glycosyl transferase family 4 Tresu_2112 PF00037 4Fe-4S binding domain Tresu_2112 PF04015 Tresu_2112 Tresu_2114 PF01936 NYN domain Tresu_2115 PF00188 Cysteine-rich secretory protein family Tresu_2116 PF00155 Aminotransferase class I and II Tresu_2117 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_2117 PF02151 UvrB/uvrC motif Tresu_2117 PF02861 Clp amino terminal domain Tresu_2117 PF07724 AAA domain (Cdc48 subfamily) Tresu_2117 PF10431 C-terminal, D2-small domain, of ClpB protein Tresu_2118 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Tresu_2119 PF02151 UvrB/uvrC motif Tresu_2120 PF02687 Tresu_2120 Tresu_2121 PF00005 ABC transporter Tresu_2122 PF02687 Tresu_2122 Tresu_2122 PF12704 MacB-like periplasmic core domain Tresu_2124 PF00448 SRP54-type protein, GTPase domain Tresu_2124 PF02881 SRP54-type protein, helical bundle domain Tresu_2125 PF08308 Tresu_2125 Tresu_2127 PF09827 CRISPR associated protein Cas2 Tresu_2129 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tresu_2131 PF09924 Uncharacterized conserved protein (DUF2156) Tresu_2133 PF00916 Tresu_2133 Tresu_2133 PF01740 STAS domain Tresu_2134 PF01926 50S ribosome-binding GTPase Tresu_2134 PF07650 KH domain Tresu_2135 PF01926 50S ribosome-binding GTPase Tresu_2135 PF06071 Protein of unknown function (DUF933) Tresu_2136 PF00849 RNA pseudouridylate synthase Tresu_2137 PF08543 Phosphomethylpyrimidine kinase Tresu_2138 PF00155 Aminotransferase class I and II Tresu_2138 PF00392 Bacterial regulatory proteins, gntR family Tresu_2139 PF00156 Phosphoribosyl transferase domain Tresu_2140 PF02824 TGS domain Tresu_2140 PF04607 Region found in RelA / SpoT proteins Tresu_2140 PF13328 HD domain Tresu_2141 PF01136 Tresu_2141 Tresu_2142 PF07859 alpha/beta hydrolase fold Tresu_2143 PF04204 Homoserine O-succinyltransferase Tresu_2145 PF01555 DNA methylase Tresu_2146 PF09903 Tresu_2146 Tresu_2147 PF00239 Resolvase, N terminal domain Tresu_2147 PF02796 Helix-turn-helix domain of resolvase Tresu_2149 PF13518 Helix-turn-helix domain Tresu_2150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_2150 PF00672 HAMP domain Tresu_2150 PF02743 Cache domain Tresu_2151 PF00478 IMP dehydrogenase / GMP reductase domain Tresu_2151 PF00571 CBS domain Tresu_2152 PF00709 Adenylosuccinate synthetase Tresu_2153 PF01554 MatE Tresu_2154 PF13419 Haloacid dehalogenase-like hydrolase Tresu_2155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tresu_2155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tresu_2156 PF00156 Phosphoribosyl transferase domain Tresu_2156 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tresu_2157 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Tresu_2157 PF13306 Leucine rich repeats (6 copies) Tresu_2158 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tresu_2159 PF01554 MatE Tresu_2160 PF01063 Aminotransferase class IV Tresu_2161 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Tresu_2163 PF01515 Phosphate acetyl/butaryl transferase Tresu_2164 PF06695 Tresu_2164 Tresu_2166 PF01921 tRNA synthetases class I (K) Tresu_2167 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tresu_2167 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tresu_2168 PF08282 haloacid dehalogenase-like hydrolase Tresu_2169 PF13173 AAA domain Tresu_2172 PF00005 ABC transporter Tresu_2172 PF12848 ABC transporter Tresu_2175 PF09455 CRISPR-associated (Cas) DxTHG family Tresu_2176 PF01609 Transposase DDE domain Tresu_2176 PF13808 Tresu_2176 Tresu_2178 PF09827 CRISPR associated protein Cas2 Tresu_2179 PF09827 CRISPR associated protein Cas2 Tresu_2180 PF01867 CRISPR associated protein Cas1 Tresu_2182 PF13151 Tresu_2182 Tresu_2183 PF12668 Tresu_2183 Tresu_2185 PF09002 Domain of unknown function (DUF1887) Tresu_2186 PF04326 Divergent AAA domain Tresu_2186 PF13412 Winged helix-turn-helix DNA-binding Tresu_2187 PF03787 RAMP superfamily Tresu_2189 PF03787 RAMP superfamily Tresu_2190 PF03750 Tresu_2190 Tresu_2192 PF10040 Uncharacterized conserved protein (DUF2276) Tresu_2193 PF01301 Glycosyl hydrolases family 35 Tresu_2195 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2196 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2197 PF13416 Bacterial extracellular solute-binding protein Tresu_2198 PF00356 Bacterial regulatory proteins, lacI family Tresu_2198 PF13377 Periplasmic binding protein-like domain Tresu_2199 PF01081 KDPG and KHG aldolase Tresu_2200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tresu_2200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tresu_2202 PF02554 Tresu_2202 Tresu_2202 PF13722 Tresu_2202 Tresu_2204 PF00365 Phosphofructokinase Tresu_2205 PF04011 LemA family Tresu_2206 PF04536 TLP18 Tresu_2207 PF00072 Response regulator receiver domain Tresu_2207 PF01339 CheB methylesterase Tresu_2208 PF01739 CheR methyltransferase, SAM binding domain Tresu_2208 PF03705 CheR methyltransferase, all-alpha domain Tresu_2209 PF01476 LysM domain Tresu_2209 PF01551 Peptidase family M23 Tresu_2210 PF01728 FtsJ-like methyltransferase Tresu_2211 PF00501 AMP-binding enzyme Tresu_2212 PF09243 Tresu_2212 Tresu_2213 PF13411 MerR HTH family regulatory protein Tresu_2214 PF01926 50S ribosome-binding GTPase Tresu_2214 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tresu_2215 PF00391 PEP-utilising enzyme, mobile domain Tresu_2215 PF02896 PEP-utilising enzyme, TIM barrel domain Tresu_2215 PF05524 PEP-utilising enzyme, N-terminal Tresu_2216 PF00990 GGDEF domain Tresu_2216 PF13377 Periplasmic binding protein-like domain Tresu_2218 PF01464 Transglycosylase SLT domain Tresu_2219 PF03099 Biotin/lipoate A/B protein ligase family Tresu_2220 PF00543 Nitrogen regulatory protein P-II Tresu_2221 PF07556 Tresu_2221 Tresu_2222 PF02664 S-Ribosylhomocysteinase (LuxS) Tresu_2223 PF13419 Haloacid dehalogenase-like hydrolase Tresu_2224 PF02127 Aminopeptidase I zinc metalloprotease (M18) Tresu_2225 PF02559 CarD-like/TRCF domain Tresu_2226 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tresu_2226 PF02542 YgbB family Tresu_2227 PF04221 RelB antitoxin Tresu_2228 PF15738 Tresu_2228 Tresu_2229 PF12844 Helix-turn-helix domain Tresu_2237 PF01381 Helix-turn-helix Tresu_2238 PF06114 Domain of unknown function (DUF955) Tresu_2239 PF14734 Domain of unknown function (DUF4469) with IG-like fold Tresu_2240 PF01381 Helix-turn-helix Tresu_2245 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_2246 PF02522 Aminoglycoside 3-N-acetyltransferase Tresu_2247 PF01850 PIN domain Tresu_2248 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tresu_2261 PF00440 Bacterial regulatory proteins, tetR family Tresu_2262 PF06541 Tresu_2262 Tresu_2263 PF00266 Aminotransferase class-V Tresu_2264 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tresu_2264 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tresu_2265 PF02583 Metal-sensitive transcriptional repressor Tresu_2266 PF00403 Heavy-metal-associated domain Tresu_2267 PF00122 E1-E2 ATPase Tresu_2267 PF00403 Heavy-metal-associated domain Tresu_2267 PF00702 haloacid dehalogenase-like hydrolase Tresu_2268 PF00675 Insulinase (Peptidase family M16) Tresu_2268 PF05193 Peptidase M16 inactive domain Tresu_2269 PF00270 DEAD/DEAH box helicase Tresu_2269 PF00271 Helicase conserved C-terminal domain Tresu_2269 PF16124 Tresu_2269 Tresu_2270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tresu_2270 PF00999 Sodium/hydrogen exchanger family Tresu_2271 PF13649 Methyltransferase domain Tresu_2272 PF02603 HPr Serine kinase N terminus Tresu_2272 PF07475 HPr Serine kinase C-terminal domain Tresu_2273 PF00381 PTS HPr component phosphorylation site Tresu_2274 PF00717 Peptidase S24-like Tresu_2274 PF01726 LexA DNA binding domain Tresu_2275 PF06144 DNA polymerase III, delta subunit Tresu_2276 PF00163 Ribosomal protein S4/S9 N-terminal domain Tresu_2276 PF01479 S4 domain Tresu_2277 PF07238 PilZ domain Tresu_2278 PF04733 Coatomer epsilon subunit Tresu_2278 PF13181 Tetratricopeptide repeat Tresu_2279 PF02643 Uncharacterized ACR, COG1430 Tresu_2281 PF00027 Cyclic nucleotide-binding domain Tresu_2282 PF01565 FAD binding domain Tresu_2282 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tresu_2283 PF01406 tRNA synthetases class I (C) catalytic domain Tresu_2284 PF04542 Sigma-70 region 2 Tresu_2284 PF08281 Sigma-70, region 4 Tresu_2286 PF01833 IPT/TIG domain Tresu_2286 PF01841 Transglutaminase-like superfamily Tresu_2287 PF00696 Amino acid kinase family Tresu_2288 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tresu_2289 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tresu_2289 PF02843 Phosphoribosylglycinamide synthetase, C domain Tresu_2289 PF02844 Phosphoribosylglycinamide synthetase, N domain Tresu_2290 PF02673 Tresu_2290 Tresu_2291 PF02080 TrkA-C domain Tresu_2291 PF02254 TrkA-N domain Tresu_2292 PF02386 Cation transport protein Tresu_2293 PF01039 Carboxyl transferase domain Tresu_2295 PF01145 SPFH domain / Band 7 family Tresu_2296 PF01145 SPFH domain / Band 7 family Tresu_2299 PF01381 Helix-turn-helix Tresu_2301 PF12784 Tresu_2301 Tresu_2302 PF00692 dUTPase Tresu_2303 PF04468 Tresu_2303 Tresu_2304 PF03885 Protein of unknown function (DUF327) Tresu_2305 PF04519 Tresu_2305 Tresu_2306 PF01551 Peptidase family M23 Tresu_2307 PF01026 TatD related DNase Tresu_2308 PF01207 Dihydrouridine synthase (Dus) Tresu_2309 PF17239 Tresu_2309 Tresu_2310 PF00990 GGDEF domain Tresu_2311 PF01694 Rhomboid family Tresu_2314 PF01409 tRNA synthetases class II core domain (F) Tresu_2315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tresu_2316 PF06745 KaiC Tresu_2316 PF13541 Subunit ChlI of Mg-chelatase Tresu_2317 PF01066 CDP-alcohol phosphatidyltransferase Tresu_2319 PF13649 Methyltransferase domain Tresu_2320 PF03729 Tresu_2320 Tresu_2321 PF02511 Thymidylate synthase complementing protein Tresu_2323 PF10974 Tresu_2323 Tresu_2324 PF01548 Tresu_2324 Tresu_2324 PF02371 Tresu_2324 Tresu_2325 PF15919 Tresu_2325 Tresu_2327 PF02530 Tresu_2327 Tresu_2328 PF13173 AAA domain Tresu_2328 PF13635 Tresu_2328 Tresu_2330 PF07521 RNA-metabolising metallo-beta-lactamase Tresu_2330 PF10996 Beta-Casp domain Tresu_2330 PF16661 Tresu_2330 Tresu_2331 PF04102 SlyX Tresu_2332 PF03006 Tresu_2332 Tresu_2333 PF02653 Tresu_2333 Tresu_2334 PF00005 ABC transporter Tresu_2335 PF13407 Periplasmic binding protein domain Tresu_2336 PF00113 Enolase, C-terminal TIM barrel domain Tresu_2336 PF03952 Enolase, N-terminal domain Tresu_2337 PF00155 Aminotransferase class I and II Tresu_2340 PF03600 Citrate transporter Tresu_2341 PF00005 ABC transporter Tresu_2341 PF02361 Cobalt transport protein Tresu_2342 PF12850 Calcineurin-like phosphoesterase superfamily domain Tresu_2344 PF04773 FecR protein Tresu_2347 PF00211 Adenylate and Guanylate cyclase catalytic domain Tresu_2347 PF05226 Tresu_2347 Tresu_2349 PF02952 L-fucose isomerase, C-terminal domain Tresu_2350 PF00596 Class II Aldolase and Adducin N-terminal domain Tresu_2351 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tresu_2351 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tresu_2352 PF13407 Periplasmic binding protein domain Tresu_2353 PF00005 ABC transporter Tresu_2354 PF02653 Tresu_2354 Tresu_2355 PF02653 Tresu_2355 Tresu_2356 PF12833 Helix-turn-helix domain Tresu_2357 PF00669 Bacterial flagellin N-terminal helical region Tresu_2357 PF00700 Bacterial flagellin C-terminal helical region Tresu_2359 PF02311 AraC-like ligand binding domain Tresu_2359 PF12833 Helix-turn-helix domain Tresu_2360 PF02441 Flavoprotein Tresu_2360 PF04127 DNA / pantothenate metabolism flavoprotein Tresu_2361 PF00924 Mechanosensitive ion channel Tresu_2364 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tresu_2366 PF01553 Acyltransferase Tresu_2368 PF02229 Transcriptional Coactivator p15 (PC4) Tresu_2371 PF00293 NUDIX domain Tresu_2372 PF13189 Cytidylate kinase-like family Tresu_2373 PF01380 SIS domain Tresu_2373 PF13522 Glutamine amidotransferase domain Tresu_2375 PF00633 Helix-hairpin-helix motif Tresu_2375 PF00730 HhH-GPD superfamily base excision DNA repair protein Tresu_2375 PF10576 Iron-sulfur binding domain of endonuclease III Tresu_2376 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tresu_2376 PF02772 S-adenosylmethionine synthetase, central domain Tresu_2376 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tresu_2377 PF16561 Tresu_2377 Tresu_2378 PF00248 Aldo/keto reductase family Tresu_2381 PF00005 ABC transporter Tresu_2382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tresu_2382 PF03466 LysR substrate binding domain Tresu_2384 PF01609 Transposase DDE domain Tresu_2384 PF13808 Tresu_2384 Tresu_2385 PF00348 Polyprenyl synthetase Tresu_2386 PF13414 TPR repeat Tresu_2386 PF14559 Tetratricopeptide repeat Tresu_2387 PF04246 Tresu_2387 Tresu_2388 PF06835 Lipopolysaccharide-assembly, LptC-related Tresu_2389 PF13100 Tresu_2389 Tresu_2390 PF00005 ABC transporter Tresu_2392 PF02629 CoA binding domain Tresu_2392 PF06971 Putative DNA-binding protein N-terminus Tresu_2393 PF03372 Endonuclease/Exonuclease/phosphatase family Tresu_2394 PF07690 Major Facilitator Superfamily Tresu_2396 PF00588 SpoU rRNA Methylase family Tresu_2397 PF02810 SEC-C motif Tresu_2398 PF00501 AMP-binding enzyme Tresu_2398 PF14535 AMP-binding enzyme C-terminal domain Tresu_2399 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tresu_2400 PF00037 4Fe-4S binding domain Tresu_2400 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tresu_2400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tresu_2402 PF00012 Hsp70 protein Tresu_2402 PF01476 LysM domain Tresu_2403 PF01464 Transglycosylase SLT domain Tresu_2404 PF00571 CBS domain Tresu_2404 PF00999 Sodium/hydrogen exchanger family Tresu_2405 PF01106 NifU-like domain Tresu_2406 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tresu_2407 PF01202 Shikimate kinase Tresu_2408 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tresu_2409 PF01963 Tresu_2409 Tresu_2410 PF13432 Tetratricopeptide repeat Tresu_2410 PF14559 Tetratricopeptide repeat Tresu_2412 PF01204 Trehalase Tresu_2413 PF01966 HD domain Tresu_2413 PF02541 Ppx/GppA phosphatase family Tresu_2414 PF02503 Polyphosphate kinase middle domain Tresu_2414 PF13089 Polyphosphate kinase N-terminal domain Tresu_2414 PF13090 Polyphosphate kinase C-terminal domain Tresu_2415 PF01176 Translation initiation factor 1A / IF-1 Tresu_2416 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tresu_2417 PF02811 PHP domain Tresu_2418 PF00072 Response regulator receiver domain Tresu_2419 PF01965 DJ-1/PfpI family Tresu_2420 PF00196 Bacterial regulatory proteins, luxR family Tresu_2422 PF01613 Flavin reductase like domain Tresu_2423 PF00571 CBS domain Tresu_2424 PF00005 ABC transporter Tresu_2425 PF00005 ABC transporter Tresu_2425 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tresu_2426 PF02653 Tresu_2426 Tresu_2427 PF02653 Tresu_2427 Tresu_2428 PF13458 Periplasmic binding protein Tresu_2430 PF01196 Ribosomal protein L17 Tresu_2431 PF01000 RNA polymerase Rpb3/RpoA insert domain Tresu_2431 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tresu_2431 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tresu_2432 PF00411 Ribosomal protein S11 Tresu_2433 PF00416 Ribosomal protein S13/S18 Tresu_2434 PF00444 Ribosomal protein L36 Tresu_2435 PF00344 SecY translocase Tresu_2436 PF00828 Ribosomal protein L18e/L15 Tresu_2437 PF00327 Ribosomal protein L30p/L7e Tresu_2438 PF00333 Ribosomal protein S5, N-terminal domain Tresu_2438 PF03719 Ribosomal protein S5, C-terminal domain Tresu_2439 PF00861 Ribosomal L18p/L5e family Tresu_2440 PF00347 Ribosomal protein L6 Tresu_2441 PF00410 Ribosomal protein S8 Tresu_2442 PF00253 Ribosomal protein S14p/S29e Tresu_2443 PF00281 Ribosomal protein L5 Tresu_2443 PF00673 ribosomal L5P family C-terminus Tresu_2444 PF00467 KOW motif Tresu_2444 PF17136 Tresu_2444 Tresu_2445 PF00238 Ribosomal protein L14p/L23e Tresu_2446 PF00366 Ribosomal protein S17 Tresu_2447 PF00831 Ribosomal L29 protein Tresu_2448 PF00252 Ribosomal protein L16p/L10e Tresu_2449 PF00189 Ribosomal protein S3, C-terminal domain Tresu_2449 PF07650 KH domain Tresu_2450 PF00237 Ribosomal protein L22p/L17e Tresu_2451 PF00203 Ribosomal protein S19 Tresu_2452 PF00181 Ribosomal Proteins L2, RNA binding domain Tresu_2452 PF03947 Ribosomal Proteins L2, C-terminal domain Tresu_2453 PF00276 Ribosomal protein L23 Tresu_2454 PF00573 Ribosomal protein L4/L1 family Tresu_2455 PF00297 Ribosomal protein L3 Tresu_2456 PF00338 Ribosomal protein S10p/S20e Tresu_2457 PF00009 Elongation factor Tu GTP binding domain Tresu_2457 PF03143 Elongation factor Tu C-terminal domain Tresu_2457 PF03144 Elongation factor Tu domain 2 Tresu_2458 PF00177 Ribosomal protein S7p/S5e Tresu_2459 PF00164 Ribosomal protein S12/S23 Tresu_2460 PF00623 RNA polymerase Rpb1, domain 2 Tresu_2460 PF04983 RNA polymerase Rpb1, domain 3 Tresu_2460 PF04997 RNA polymerase Rpb1, domain 1 Tresu_2460 PF04998 RNA polymerase Rpb1, domain 5 Tresu_2460 PF05000 RNA polymerase Rpb1, domain 4 Tresu_2461 PF00562 RNA polymerase Rpb2, domain 6 Tresu_2461 PF04560 RNA polymerase Rpb2, domain 7 Tresu_2461 PF04561 RNA polymerase Rpb2, domain 2 Tresu_2461 PF04563 RNA polymerase beta subunit Tresu_2461 PF04565 RNA polymerase Rpb2, domain 3 Tresu_2461 PF10385 RNA polymerase beta subunit external 1 domain Tresu_2462 PF00542 Ribosomal protein L7/L12 C-terminal domain Tresu_2462 PF16320 Tresu_2462 Tresu_2463 PF00466 Ribosomal protein L10 Tresu_2464 PF00687 Ribosomal protein L1p/L10e family Tresu_2465 PF00298 Ribosomal protein L11, RNA binding domain Tresu_2465 PF03946 Ribosomal protein L11, N-terminal domain Tresu_2466 PF00467 KOW motif Tresu_2466 PF02357 Transcription termination factor nusG Tresu_2467 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Tresu_2468 PF00471 Ribosomal protein L33 Tresu_2469 PF00132 Bacterial transferase hexapeptide (six repeats) Tresu_2471 PF14384 Tresu_2471 Tresu_2472 PF04365 Protein of unknown function (DUF497) Tresu_2473 PF07693 Tresu_2473 Tresu_2474 PF03781 Sulfatase-modifying factor enzyme 1 Tresu_2474 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Tresu_2476 PF01522 Polysaccharide deacetylase Tresu_2477 PF02661 Fic/DOC family Tresu_2479 PF13614 AAA domain Tresu_2480 PF01790 Tresu_2480 Tresu_2481 PF08241 Methyltransferase domain Tresu_2482 PF01808 AICARFT/IMPCHase bienzyme Tresu_2483 PF00977 Histidine biosynthesis protein Tresu_2483 PF01502 Phosphoribosyl-AMP cyclohydrolase Tresu_2483 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tresu_2484 PF01979 Amidohydrolase family Tresu_2485 PF00563 EAL domain Tresu_2485 PF00990 GGDEF domain Tresu_2485 PF04392 ABC transporter substrate binding protein Tresu_2486 PF04055 Radical SAM superfamily Tresu_2486 PF08497 Tresu_2486 Tresu_2486 PF11842 Tresu_2486 Tresu_2488 PF00037 4Fe-4S binding domain Tresu_2488 PF12801 Tresu_2488 Tresu_2489 PF13386 Tresu_2489 Tresu_2490 PF00152 tRNA synthetases class II (D, K and N) Tresu_2490 PF01336 OB-fold nucleic acid binding domain Tresu_2490 PF02938 GAD domain Tresu_2491 PF01966 HD domain Tresu_2492 PF00759 Glycosyl hydrolase family 9 Tresu_2492 PF02018 Carbohydrate binding domain Tresu_2492 PF02927 N-terminal ig-like domain of cellulase Tresu_2493 PF02446 4-alpha-glucanotransferase Tresu_2494 PF00356 Bacterial regulatory proteins, lacI family Tresu_2494 PF13377 Periplasmic binding protein-like domain Tresu_2495 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2496 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2497 PF13416 Bacterial extracellular solute-binding protein Tresu_2498 PF00474 Sodium:solute symporter family Tresu_2499 PF04392 ABC transporter substrate binding protein Tresu_2500 PF02653 Tresu_2500 Tresu_2501 PF00005 ABC transporter Tresu_2502 PF00375 Sodium:dicarboxylate symporter family Tresu_2503 PF04452 RNA methyltransferase Tresu_2504 PF05559 Tresu_2504 Tresu_2505 PF00528 Binding-protein-dependent transport system inner membrane component Tresu_2506 PF00005 ABC transporter Tresu_2506 PF09383 NIL domain Tresu_2507 PF00849 RNA pseudouridylate synthase Tresu_2508 PF13306 Leucine rich repeats (6 copies) Tresu_2509 PF00890 FAD binding domain Tresu_2509 PF04205 FMN-binding domain Tresu_2511 PF05167 Uncharacterised ACR (DUF711) Tresu_2512 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tresu_2513 PF01180 Dihydroorotate dehydrogenase Tresu_2513 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tresu_2515 PF01252 Tresu_2515 Tresu_2516 PF12850 Calcineurin-like phosphoesterase superfamily domain Tresu_2518 PF00534 Glycosyl transferases group 1 Tresu_2519 PF00588 SpoU rRNA Methylase family Tresu_2520 PF00465 Iron-containing alcohol dehydrogenase Tresu_2521 PF04316 Anti-sigma-28 factor, FlgM Tresu_2522 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tresu_2523 PF01580 FtsK/SpoIIIE family Tresu_2523 PF09397 Ftsk gamma domain Tresu_2524 PF00704 Glycosyl hydrolases family 18 Tresu_2526 PF03180 NLPA lipoprotein Tresu_2527 PF04471 Restriction endonuclease Tresu_2527 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 Tresu_2528 PF00155 Aminotransferase class I and II Tresu_2529 PF01037 AsnC family Tresu_2529 PF13412 Winged helix-turn-helix DNA-binding Tresu_2530 PF00475 Imidazoleglycerol-phosphate dehydratase Tresu_2531 PF01634 ATP phosphoribosyltransferase Tresu_2531 PF08029 HisG, C-terminal domain Tresu_2532 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Tresu_2533 PF01487 Type I 3-dehydroquinase Tresu_2533 PF01488 Shikimate / quinate 5-dehydrogenase Tresu_2533 PF08501 Shikimate dehydrogenase substrate binding domain Tresu_2534 PF13625 Tresu_2534 Tresu_2535 PF04851 Type III restriction enzyme, res subunit Tresu_2535 PF13625 Tresu_2535 Tresu_2535 PF16203 Tresu_2535 Tresu_2536 PF02915 Rubrerythrin Tresu_2537 PF01475 Ferric uptake regulator family Tresu_2538 PF13367 Tresu_2538 Tresu_2539 PF00440 Bacterial regulatory proteins, tetR family Tresu_2540 PF01170 Putative RNA methylase family UPF0020 Tresu_2541 PF01609 Transposase DDE domain Tresu_2541 PF13808 Tresu_2541 Tresu_2542 PF03852 DNA mismatch endonuclease Vsr Tresu_2544 PF03358 NADPH-dependent FMN reductase Tresu_2545 PF04191 Phospholipid methyltransferase Tresu_2547 PF00440 Bacterial regulatory proteins, tetR family Tresu_2548 PF12833 Helix-turn-helix domain Tresu_2549 PF00150 Cellulase (glycosyl hydrolase family 5) Tresu_2550 PF00722 Glycosyl hydrolases family 16 Tresu_2550 PF02018 Carbohydrate binding domain Tresu_2551 PF13527 Acetyltransferase (GNAT) domain Tresu_2552 PF07676 WD40-like Beta Propeller Repeat Tresu_2553 PF01381 Helix-turn-helix Tresu_2554 PF08765 Mor transcription activator family Tresu_2555 PF12900 Pyridoxamine 5'-phosphate oxidase Tresu_2556 PF00575 S1 RNA binding domain Tresu_2557 PF00293 NUDIX domain Tresu_2558 PF00583 Acetyltransferase (GNAT) family Tresu_2558 PF00696 Amino acid kinase family Tresu_2559 PF00521 DNA gyrase/topoisomerase IV, subunit A Tresu_2559 PF03989 DNA gyrase C-terminal domain, beta-propeller Tresu_2560 PF00204 DNA gyrase B Tresu_2560 PF00986 DNA gyrase B subunit, carboxyl terminus Tresu_2560 PF01751 Toprim domain Tresu_2560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tresu_2563 PF04965 Gene 25-like lysozyme Tresu_2564 PF04865 Tresu_2564 Tresu_2566 PF04984 Phage tail sheath protein Tresu_2566 PF17482 Tresu_2566 Tresu_2567 PF06841 Tresu_2567 Tresu_2570 PF06868 Tresu_2570 Tresu_2571 PF09684 Tresu_2571 Tresu_2574 PF01551 Peptidase family M23 Tresu_2575 PF08239 Bacterial SH3 domain Tresu_2578 PF00665 Integrase core domain Tresu_2579 PF01527 Transposase Tresu_2580 PF01551 Peptidase family M23 Tresu_2581 PF08239 Bacterial SH3 domain Tresu_2584 PF06114 Domain of unknown function (DUF955) Tresu_2587 PF00498 FHA domain Tresu_2588 PF00092 von Willebrand factor type A domain Tresu_2589 PF04984 Phage tail sheath protein Tresu_2589 PF17482 Tresu_2589 Tresu_2590 PF06841 Tresu_2590 Tresu_2591 PF01476 LysM domain Tresu_2592 PF05954 Phage late control gene D protein (GPD) Tresu_2593 PF14252 Tresu_2593 Tresu_2599 PF11692 Tresu_2599 Tresu_2603 PF00665 Integrase core domain Tresu_2604 PF01527 Transposase Tresu_2608 PF05954 Phage late control gene D protein (GPD) Tresu_2613 PF05954 Phage late control gene D protein (GPD) Tresu_2614 PF15607 Tresu_2614 Tresu_2619 PF01527 Transposase Tresu_2620 PF00665 Integrase core domain Tresu_2622 PF05954 Phage late control gene D protein (GPD) Tresu_2628 PF04055 Radical SAM superfamily Tresu_2628 PF13353 4Fe-4S single cluster domain Tresu_2629 PF00004 ATPase family associated with various cellular activities (AAA) Tresu_2635 PF12796 Ankyrin repeats (3 copies) Tresu_2640 PF13308 YARHG domain Tresu_2641 PF13308 YARHG domain Tresu_2642 PF13308 YARHG domain Tresu_2643 PF13308 YARHG domain Tresu_2648 PF11211 Tresu_2648 Tresu_2650 PF13599 Pentapeptide repeats (9 copies) Tresu_2653 PF01609 Transposase DDE domain Tresu_2653 PF13808 Tresu_2653 Tresu_2658 PF13699 Tresu_2658 Tresu_2661 PF13699 Tresu_2661 Tresu_2665 PF13699 Tresu_2665 Tresu_2666 PF15532 Tresu_2666 Tresu_2670 PF00665 Integrase core domain Tresu_2671 PF01527 Transposase Tresu_2673 PF01527 Transposase Tresu_2674 PF00665 Integrase core domain Tresu_2675 PF02368 Bacterial Ig-like domain (group 2) Tresu_2676 PF03743 Bacterial conjugation TrbI-like protein Tresu_2677 PF03524 Conjugal transfer protein Tresu_2682 PF01131 DNA topoisomerase Tresu_2682 PF01751 Toprim domain Tresu_2686 PF00717 Peptidase S24-like Tresu_2689 PF01381 Helix-turn-helix Tresu_2690 PF05015 Plasmid maintenance system killer protein Tresu_2694 PF13173 AAA domain Tresu_2694 PF13635 Tresu_2694 Tresu_2695 PF02534 Type IV secretory system Conjugative DNA transfer Tresu_2697 PF00437 Type II/IV secretion system protein Tresu_2698 PF04956 Tresu_2698 Tresu_2700 PF05101 Tresu_2700 Tresu_2701 PF03135 Tresu_2701 Tresu_2704 PF12762 Tresu_2704 Tresu_2714 PF02195 ParB-like nuclease domain Tresu_2715 PF13614 AAA domain Tresu_2716 PF13614 AAA domain Tresu_2720 PF00176 SNF2 family N-terminal domain Tresu_2720 PF00271 Helicase conserved C-terminal domain Tresu_2720 PF04002 RadC-like JAB domain Tresu_R0025 PF01381 Helix-turn-helix