Tresu_0001 SM00382 ATPases associated with a variety of cellular activities Tresu_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Tresu_0002 SM00480 DNA polymerase III beta subunit Tresu_0006 SM01234 Tresu_0006 Tresu_0008 SM00393 Putative single-stranded nucleic acids-binding domain Tresu_0008 SM01245 Tresu_0008 Tresu_0013 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tresu_0015 SM01103 Tresu_0015 Tresu_0018 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Tresu_0019 SM00851 MGS-like domain Tresu_0019 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tresu_0020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0024 SM00382 ATPases associated with a variety of cellular activities Tresu_0033 SM00226 Low molecular weight phosphatase family Tresu_0038 SM00155 Phospholipase D. Active site motifs. Tresu_0039 SM01211 Tresu_0039 Tresu_0041 SM01091 Transporter associated domain Tresu_0042 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_0042 SM01091 Transporter associated domain Tresu_0045 SM00382 ATPases associated with a variety of cellular activities Tresu_0049 SM01068 Putative carbohydrate binding domain Tresu_0054 SM00354 helix_turn _helix lactose operon repressor Tresu_0056 SM00493 Tresu_0056 Tresu_0064 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tresu_0064 SM00245 tail specific protease Tresu_0067 SM00382 ATPases associated with a variety of cellular activities Tresu_0073 SM00740 Tresu_0073 Tresu_0076 SM00382 ATPases associated with a variety of cellular activities Tresu_0080 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_0080 SM00876 Biotin and Thiamin Synthesis associated domain Tresu_0082 SM00382 ATPases associated with a variety of cellular activities Tresu_0118 SM00382 ATPases associated with a variety of cellular activities Tresu_0124 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_0136 SM00382 ATPases associated with a variety of cellular activities Tresu_0140 SM00382 ATPases associated with a variety of cellular activities Tresu_0141 SM00382 ATPases associated with a variety of cellular activities Tresu_0145 SM00421 helix_turn_helix, Lux Regulon Tresu_0145 SM00448 cheY-homologous receiver domain Tresu_0151 SM00535 Ribonuclease III family Tresu_0171 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0175 SM00633 Glycosyl hydrolase family 10 Tresu_0177 SM00354 helix_turn _helix lactose operon repressor Tresu_0186 SM00481 DNA polymerase alpha chain like domain Tresu_0187 SM00100 Cyclic nucleotide-monophosphate binding domain Tresu_0192 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_0192 SM00732 Likely ribonuclease with RNase H fold. Tresu_0201 SM00487 DEAD-like helicases superfamily Tresu_0208 SM01012 Tresu_0208 Tresu_0209 SM01230 Tresu_0209 Tresu_0210 SM01230 Tresu_0210 Tresu_0213 SM00938 Nitrogen regulatory protein P-II Tresu_0214 SM00710 Parallel beta-helix repeats Tresu_0221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_0222 SM00342 helix_turn_helix, arabinose operon control protein Tresu_0222 SM00448 cheY-homologous receiver domain Tresu_0227 SM00327 von Willebrand factor (vWF) type A domain Tresu_0228 SM00028 Tetratricopeptide repeats Tresu_0228 SM00327 von Willebrand factor (vWF) type A domain Tresu_0230 SM00463 Small MutS-related domain Tresu_0231 SM00271 DnaJ molecular chaperone homology domain Tresu_0261 SM00873 B3/4 domain Tresu_0261 SM00874 tRNA synthetase B5 domain Tresu_0262 SM01126 Tresu_0262 Tresu_0281 SM01126 Tresu_0281 Tresu_0292 SM00998 Adenylosuccinate lyase C-terminus Tresu_0296 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_0302 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0303 SM00487 DEAD-like helicases superfamily Tresu_0303 SM00490 helicase superfamily c-terminal domain Tresu_0311 SM00857 Resolvase, N terminal domain Tresu_0320 SM00382 ATPases associated with a variety of cellular activities Tresu_0328 SM00220 Serine/Threonine protein kinases, catalytic domain Tresu_0337 SM00506 Appr-1"-p processing enzyme Tresu_0345 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tresu_0346 SM00014 Acid phosphatase homologues Tresu_0348 SM00909 Sporulation and spore germination Tresu_0354 SM00387 Histidine kinase-like ATPases Tresu_0354 SM00433 TopoisomeraseII Tresu_0355 SM00434 DNA Topoisomerase IV Tresu_0371 SM01126 Tresu_0371 Tresu_0373 SM00740 Tresu_0373 Tresu_0375 SM00257 Lysin motif Tresu_0378 SM00849 Metallo-beta-lactamase superfamily Tresu_0387 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tresu_0388 SM01130 Tresu_0388 Tresu_0389 SM00421 helix_turn_helix, Lux Regulon Tresu_0393 SM01329 Tresu_0393 Tresu_0395 SM00271 DnaJ molecular chaperone homology domain Tresu_0398 SM00845 GatB domain Tresu_0402 SM01217 Tresu_0402 Tresu_0403 SM00342 helix_turn_helix, arabinose operon control protein Tresu_0405 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Tresu_0406 SM00822 Tresu_0406 Tresu_0407 SM00825 Beta-ketoacyl synthase Tresu_0410 SM00562 Tresu_0410 Tresu_0412 SM00382 ATPases associated with a variety of cellular activities Tresu_0412 SM00962 SRP54-type protein, GTPase domain Tresu_0412 SM00963 SRP54-type protein, helical bundle domain Tresu_0414 SM00028 Tetratricopeptide repeats Tresu_0421 SM00642 Alpha-amylase domain Tresu_0434 SM00954 Region found in RelA / SpoT proteins Tresu_0435 SM00529 Helix-turn-helix diphteria tox regulatory element Tresu_0437 SM00062 Bacterial periplasmic substrate-binding proteins Tresu_0439 SM00382 ATPases associated with a variety of cellular activities Tresu_0440 SM01131 Tresu_0440 Tresu_0442 SM00382 ATPases associated with a variety of cellular activities Tresu_0446 SM00363 S4 RNA-binding domain Tresu_0447 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Tresu_0447 SM00474 3'-5' exonuclease Tresu_0447 SM00475 5'-3' exonuclease Tresu_0447 SM00482 DNA polymerase A domain Tresu_0453 SM00900 Tresu_0453 Tresu_0461 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tresu_0464 SM00028 Tetratricopeptide repeats Tresu_0465 SM00883 Chaperonin 10 Kd subunit Tresu_0467 SM00487 DEAD-like helicases superfamily Tresu_0467 SM00490 helicase superfamily c-terminal domain Tresu_0469 SM00481 DNA polymerase alpha chain like domain Tresu_0471 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0471 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_0485 SM00642 Alpha-amylase domain Tresu_0494 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tresu_0498 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0501 SM00028 Tetratricopeptide repeats Tresu_0519 SM00487 DEAD-like helicases superfamily Tresu_0525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0542 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0545 SM00421 helix_turn_helix, Lux Regulon Tresu_0545 SM00448 cheY-homologous receiver domain Tresu_0547 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0570 SM00487 DEAD-like helicases superfamily Tresu_0574 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0579 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_0579 SM00924 MgtE intracellular N domain Tresu_0583 SM00487 DEAD-like helicases superfamily Tresu_0601 SM00986 Uracil DNA glycosylase superfamily Tresu_0601 SM00987 UreE urease accessory protein, C-terminal domain Tresu_0608 SM00836 DALR anticodon binding domain Tresu_0608 SM01016 Arginyl tRNA synthetase N terminal dom Tresu_0612 SM00271 DnaJ molecular chaperone homology domain Tresu_0613 SM00331 Sigma factor PP2C-like phosphatases Tresu_0614 SM00331 Sigma factor PP2C-like phosphatases Tresu_0622 SM00382 ATPases associated with a variety of cellular activities Tresu_0623 SM00849 Metallo-beta-lactamase superfamily Tresu_0629 SM00342 helix_turn_helix, arabinose operon control protein Tresu_0631 SM00833 Cobalamin synthesis protein cobW C-terminal domain Tresu_0632 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0632 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_0637 SM01144 Tresu_0637 Tresu_0643 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0708 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0711 SM01126 Tresu_0711 Tresu_0712 SM01324 Tresu_0712 Tresu_0719 SM00248 ankyrin repeats Tresu_0722 SM00966 SpoVT / AbrB like domain Tresu_0746 SM00966 SpoVT / AbrB like domain Tresu_0775 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_0786 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0797 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0801 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0821 SM01228 Tresu_0821 Tresu_0825 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Tresu_0827 SM00363 S4 RNA-binding domain Tresu_0830 SM00917 LeuA allosteric (dimerisation) domain Tresu_0831 SM01329 Tresu_0831 Tresu_0832 SM00387 Histidine kinase-like ATPases Tresu_0832 SM00388 His Kinase A (phosphoacceptor) domain Tresu_0832 SM00448 cheY-homologous receiver domain Tresu_0835 SM00899 Tresu_0835 Tresu_0836 SM00899 Tresu_0836 Tresu_0843 SM00642 Alpha-amylase domain Tresu_0847 SM00465 GIY-YIG type nucleases (URI domain) Tresu_0849 SM00028 Tetratricopeptide repeats Tresu_0850 SM01001 AIR carboxylase Tresu_0866 SM00382 ATPases associated with a variety of cellular activities Tresu_0883 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0896 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_0903 SM01323 Tresu_0903 Tresu_0911 SM00382 ATPases associated with a variety of cellular activities Tresu_0917 SM00387 Histidine kinase-like ATPases Tresu_0917 SM00388 His Kinase A (phosphoacceptor) domain Tresu_0917 SM00448 cheY-homologous receiver domain Tresu_0919 SM00448 cheY-homologous receiver domain Tresu_0921 SM00382 ATPases associated with a variety of cellular activities Tresu_0924 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0930 SM00530 Helix-turn-helix XRE-family like proteins Tresu_0933 SM00640 Glycosyl hydrolases family 32 Tresu_0956 SM00507 HNH nucleases Tresu_0962 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_0973 SM00937 Tresu_0973 Tresu_0978 SM00382 ATPases associated with a variety of cellular activities Tresu_0981 SM00463 Small MutS-related domain Tresu_0981 SM00534 ATPase domain of DNA mismatch repair MUTS family Tresu_0997 SM00322 K homology RNA-binding domain Tresu_0997 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_1025 SM01126 Tresu_1025 Tresu_1033 SM00382 ATPases associated with a variety of cellular activities Tresu_1033 SM00464 Found in ATP-dependent protease La (LON) Tresu_1038 SM00240 Forkhead associated domain Tresu_1040 SM00220 Serine/Threonine protein kinases, catalytic domain Tresu_1046 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tresu_1046 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_1058 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tresu_1059 SM00382 ATPases associated with a variety of cellular activities Tresu_1063 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Tresu_1071 SM00028 Tetratricopeptide repeats Tresu_1078 SM00292 breast cancer carboxy-terminal domain Tresu_1078 SM00532 Ligase N family Tresu_1081 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Tresu_1090 SM00487 DEAD-like helicases superfamily Tresu_1115 SM00487 DEAD-like helicases superfamily Tresu_1125 SM00382 ATPases associated with a variety of cellular activities Tresu_1127 SM00382 ATPases associated with a variety of cellular activities Tresu_1128 SM00470 ParB-like nuclease domain Tresu_1139 SM00028 Tetratricopeptide repeats Tresu_1149 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1150 SM00861 Transketolase, pyrimidine binding domain Tresu_1165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tresu_1165 SM00331 Sigma factor PP2C-like phosphatases Tresu_1168 SM00028 Tetratricopeptide repeats Tresu_1169 SM00028 Tetratricopeptide repeats Tresu_1170 SM00028 Tetratricopeptide repeats Tresu_1171 SM00853 MutL C terminal dimerisation domain Tresu_1171 SM01340 Tresu_1171 Tresu_1178 SM00646 Tresu_1178 Tresu_1181 SM00028 Tetratricopeptide repeats Tresu_1181 SM00954 Region found in RelA / SpoT proteins Tresu_1186 SM01126 Tresu_1186 Tresu_1189 SM00903 Flavin reductase like domain Tresu_1199 SM00487 DEAD-like helicases superfamily Tresu_1199 SM00490 helicase superfamily c-terminal domain Tresu_1200 SM00382 ATPases associated with a variety of cellular activities Tresu_1202 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tresu_1215 SM00358 Double-stranded RNA binding motif Tresu_1215 SM00535 Ribonuclease III family Tresu_1233 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1234 SM00411 bacterial (prokaryotic) histone like domain Tresu_1239 SM00382 ATPases associated with a variety of cellular activities Tresu_1240 SM00849 Metallo-beta-lactamase superfamily Tresu_1242 SM00400 zinc finger Tresu_1242 SM00493 Tresu_1242 Tresu_1245 SM00028 Tetratricopeptide repeats Tresu_1251 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1252 SM00487 DEAD-like helicases superfamily Tresu_1252 SM00490 helicase superfamily c-terminal domain Tresu_1252 SM00982 Tresu_1252 Tresu_1252 SM01058 CarD-like/TRCF domain Tresu_1256 SM01005 Alanine racemase, C-terminal domain Tresu_1260 SM00382 ATPases associated with a variety of cellular activities Tresu_1261 SM00849 Metallo-beta-lactamase superfamily Tresu_1274 SM00650 Ribosomal RNA adenine dimethylases Tresu_1285 SM00342 helix_turn_helix, arabinose operon control protein Tresu_1286 SM00271 DnaJ molecular chaperone homology domain Tresu_1287 SM00382 ATPases associated with a variety of cellular activities Tresu_1287 SM00448 cheY-homologous receiver domain Tresu_1288 SM00091 PAS domain Tresu_1288 SM00387 Histidine kinase-like ATPases Tresu_1288 SM00388 His Kinase A (phosphoacceptor) domain Tresu_1292 SM00248 ankyrin repeats Tresu_1294 SM00382 ATPases associated with a variety of cellular activities Tresu_1295 SM00382 ATPases associated with a variety of cellular activities Tresu_1299 SM00382 ATPases associated with a variety of cellular activities Tresu_1299 SM00994 ClpX C4-type zinc finger Tresu_1299 SM01086 C-terminal, D2-small domain, of ClpB protein Tresu_1301 SM00487 DEAD-like helicases superfamily Tresu_1301 SM00490 helicase superfamily c-terminal domain Tresu_1311 SM00488 Tresu_1311 Tresu_1311 SM00491 Tresu_1311 Tresu_1336 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1355 SM01126 Tresu_1355 Tresu_1358 SM00382 ATPases associated with a variety of cellular activities Tresu_1360 SM00354 helix_turn _helix lactose operon repressor Tresu_1361 SM01068 Putative carbohydrate binding domain Tresu_1362 SM00248 ankyrin repeats Tresu_1365 SM00028 Tetratricopeptide repeats Tresu_1373 SM00642 Alpha-amylase domain Tresu_1379 SM00382 ATPases associated with a variety of cellular activities Tresu_1381 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1384 SM00984 UDP binding domain Tresu_1403 SM00052 Putative diguanylate phosphodiesterase Tresu_1403 SM00267 diguanylate cyclase Tresu_1405 SM00357 Cold shock protein domain Tresu_1405 SM00382 ATPases associated with a variety of cellular activities Tresu_1405 SM00959 Rho termination factor, N-terminal domain Tresu_1407 SM00411 bacterial (prokaryotic) histone like domain Tresu_1410 SM00563 Phosphate acyltransferases Tresu_1446 SM00917 LeuA allosteric (dimerisation) domain Tresu_1450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_1457 SM00671 Sel1-like repeats. Tresu_1463 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1465 SM00861 Transketolase, pyrimidine binding domain Tresu_1482 SM00382 ATPases associated with a variety of cellular activities Tresu_1482 SM01086 C-terminal, D2-small domain, of ClpB protein Tresu_1485 SM01264 Tresu_1485 Tresu_1487 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tresu_1492 SM00477 DNA/RNA non-specific endonuclease Tresu_1492 SM00892 DNA/RNA non-specific endonuclease Tresu_1493 SM00854 Bacterial capsule synthesis protein PGA_cap Tresu_1494 SM00487 DEAD-like helicases superfamily Tresu_1494 SM00490 helicase superfamily c-terminal domain Tresu_1494 SM00847 Helicase associated domain (HA2) Add an annotation Tresu_1504 SM00363 S4 RNA-binding domain Tresu_1510 SM00382 ATPases associated with a variety of cellular activities Tresu_1516 SM00382 ATPases associated with a variety of cellular activities Tresu_1518 SM00062 Bacterial periplasmic substrate-binding proteins Tresu_1519 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1525 SM00382 ATPases associated with a variety of cellular activities Tresu_1527 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1528 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tresu_1531 SM01245 Tresu_1531 Tresu_1535 SM00382 ATPases associated with a variety of cellular activities Tresu_1535 SM00962 SRP54-type protein, GTPase domain Tresu_1549 SM00448 cheY-homologous receiver domain Tresu_1549 SM00862 Transcriptional regulatory protein, C terminal Tresu_1550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_1550 SM00387 Histidine kinase-like ATPases Tresu_1550 SM00388 His Kinase A (phosphoacceptor) domain Tresu_1552 SM01409 Tresu_1552 Tresu_1558 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_1558 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_1575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_1575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_1577 SM00981 Tresu_1577 Tresu_1581 SM00986 Uracil DNA glycosylase superfamily Tresu_1581 SM00987 UreE urease accessory protein, C-terminal domain Tresu_1582 SM00487 DEAD-like helicases superfamily Tresu_1582 SM00490 helicase superfamily c-terminal domain Tresu_1584 SM00957 SecA DEAD-like domain Tresu_1584 SM00958 SecA preprotein cross-linking domain Tresu_1585 SM00382 ATPases associated with a variety of cellular activities Tresu_1585 SM01086 C-terminal, D2-small domain, of ClpB protein Tresu_1588 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tresu_1588 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tresu_1588 SM00493 Tresu_1588 Tresu_1590 SM00028 Tetratricopeptide repeats Tresu_1592 SM00864 Tubulin/FtsZ family, GTPase domain Tresu_1592 SM00865 Tubulin/FtsZ family, C-terminal domain Tresu_1593 SM00842 Cell division protein FtsA Tresu_1609 SM00347 helix_turn_helix multiple antibiotic resistance protein Tresu_1611 SM00448 cheY-homologous receiver domain Tresu_1613 SM00138 Methyltransferase, chemotaxis proteins Tresu_1613 SM00260 Two component signalling adaptor domain Tresu_1614 SM00073 Histidine Phosphotransfer domain Tresu_1614 SM00260 Two component signalling adaptor domain Tresu_1614 SM00387 Histidine kinase-like ATPases Tresu_1614 SM01231 Tresu_1614 Tresu_1616 SM00448 cheY-homologous receiver domain Tresu_1616 SM00862 Transcriptional regulatory protein, C terminal Tresu_1640 SM00487 DEAD-like helicases superfamily Tresu_1640 SM00490 helicase superfamily c-terminal domain Tresu_1648 SM00487 DEAD-like helicases superfamily Tresu_1648 SM00490 helicase superfamily c-terminal domain Tresu_1662 SM00028 Tetratricopeptide repeats Tresu_1663 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_1663 SM01091 Transporter associated domain Tresu_1665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_1677 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_1677 SM01091 Transporter associated domain Tresu_1688 SM00387 Histidine kinase-like ATPases Tresu_1688 SM00388 His Kinase A (phosphoacceptor) domain Tresu_1689 SM00448 cheY-homologous receiver domain Tresu_1689 SM00862 Transcriptional regulatory protein, C terminal Tresu_1702 SM01001 AIR carboxylase Tresu_1706 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_1706 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_1706 SM01049 Tresu_1706 Tresu_1736 SM00487 DEAD-like helicases superfamily Tresu_1747 SM00382 ATPases associated with a variety of cellular activities Tresu_1758 SM00671 Sel1-like repeats. Tresu_1760 SM00635 Bacterial Ig-like domain 2 Tresu_1773 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tresu_1773 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tresu_1773 SM00493 Tresu_1773 Tresu_1784 SM00248 ankyrin repeats Tresu_1790 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1794 SM00360 RNA recognition motif Tresu_1799 SM00838 Elongation factor G C-terminus Tresu_1799 SM00889 Elongation factor G, domain IV Tresu_1800 SM00448 cheY-homologous receiver domain Tresu_1805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tresu_1805 SM00382 ATPases associated with a variety of cellular activities Tresu_1806 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_1807 SM00363 S4 RNA-binding domain Tresu_1811 SM00382 ATPases associated with a variety of cellular activities Tresu_1821 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tresu_1834 SM00260 Two component signalling adaptor domain Tresu_1836 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tresu_1836 SM00534 ATPase domain of DNA mismatch repair MUTS family Tresu_1837 SM00935 Outer membrane protein (OmpH-like) Tresu_1844 SM01018 B12 binding domain Tresu_1850 SM00287 Bacterial SH3 domain homologues Tresu_1852 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Tresu_1852 SM01080 Tresu_1852 Tresu_1857 SM00955 Tresu_1857 Tresu_1858 SM00382 ATPases associated with a variety of cellular activities Tresu_1860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_1860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_1864 SM00712 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. Tresu_1868 SM00028 Tetratricopeptide repeats Tresu_1874 SM00849 Metallo-beta-lactamase superfamily Tresu_1875 SM01133 Tresu_1875 Tresu_1876 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tresu_1880 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1881 SM00028 Tetratricopeptide repeats Tresu_1883 SM00487 DEAD-like helicases superfamily Tresu_1883 SM00490 helicase superfamily c-terminal domain Tresu_1886 SM00838 Elongation factor G C-terminus Tresu_1886 SM00889 Elongation factor G, domain IV Tresu_1892 SM00342 helix_turn_helix, arabinose operon control protein Tresu_1892 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tresu_1902 SM00871 Bacterial transcription activator, effector binding domain Tresu_1912 SM00857 Resolvase, N terminal domain Tresu_1922 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1928 SM00857 Resolvase, N terminal domain Tresu_1938 SM00530 Helix-turn-helix XRE-family like proteins Tresu_1939 SM00889 Elongation factor G, domain IV Tresu_1946 SM00861 Transketolase, pyrimidine binding domain Tresu_1956 SM00387 Histidine kinase-like ATPases Tresu_1958 SM00421 helix_turn_helix, Lux Regulon Tresu_1965 SM00421 helix_turn_helix, Lux Regulon Tresu_1965 SM00448 cheY-homologous receiver domain Tresu_1974 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_1981 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2010 SM01038 Beta galactosidase small chain Tresu_2015 SM00382 ATPases associated with a variety of cellular activities Tresu_2022 SM00382 ATPases associated with a variety of cellular activities Tresu_2026 SM00052 Putative diguanylate phosphodiesterase Tresu_2026 SM00331 Sigma factor PP2C-like phosphatases Tresu_2027 SM00448 cheY-homologous receiver domain Tresu_2027 SM00862 Transcriptional regulatory protein, C terminal Tresu_2028 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_2028 SM00387 Histidine kinase-like ATPases Tresu_2028 SM00388 His Kinase A (phosphoacceptor) domain Tresu_2030 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tresu_2031 SM00487 DEAD-like helicases superfamily Tresu_2031 SM00490 helicase superfamily c-terminal domain Tresu_2043 SM00052 Putative diguanylate phosphodiesterase Tresu_2043 SM00267 diguanylate cyclase Tresu_2046 SM01126 Tresu_2046 Tresu_2050 SM00382 ATPases associated with a variety of cellular activities Tresu_2051 SM00062 Bacterial periplasmic substrate-binding proteins Tresu_2059 SM00470 ParB-like nuclease domain Tresu_2064 SM00479 Tresu_2064 Tresu_2066 SM00257 Lysin motif Tresu_2077 SM00841 Elongation factor P, C-terminal Tresu_2077 SM01185 Tresu_2077 Tresu_2080 SM00341 Helicase and RNase D C-terminal Tresu_2080 SM00487 DEAD-like helicases superfamily Tresu_2080 SM00490 helicase superfamily c-terminal domain Tresu_2081 SM00567 E-Z type HEAT repeats Tresu_2087 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_2087 SM00322 K homology RNA-binding domain Tresu_2088 SM01387 Tresu_2088 Tresu_2092 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_2095 SM01118 Tresu_2095 Tresu_2105 SM00382 ATPases associated with a variety of cellular activities Tresu_2117 SM00382 ATPases associated with a variety of cellular activities Tresu_2117 SM01086 C-terminal, D2-small domain, of ClpB protein Tresu_2121 SM00382 ATPases associated with a variety of cellular activities Tresu_2124 SM00382 ATPases associated with a variety of cellular activities Tresu_2124 SM00962 SRP54-type protein, GTPase domain Tresu_2138 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tresu_2140 SM00954 Region found in RelA / SpoT proteins Tresu_2147 SM00857 Resolvase, N terminal domain Tresu_2150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_2150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tresu_2151 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_2151 SM01240 Tresu_2151 Tresu_2152 SM00788 Adenylosuccinate synthetase Tresu_2156 SM01400 Tresu_2156 Tresu_2172 SM00382 ATPases associated with a variety of cellular activities Tresu_2198 SM00354 helix_turn _helix lactose operon repressor Tresu_2200 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tresu_2207 SM00448 cheY-homologous receiver domain Tresu_2208 SM00138 Methyltransferase, chemotaxis proteins Tresu_2209 SM00257 Lysin motif Tresu_2213 SM00422 helix_turn_helix, mercury resistance Tresu_2216 SM00267 diguanylate cyclase Tresu_2220 SM00938 Nitrogen regulatory protein P-II Tresu_2225 SM01058 CarD-like/TRCF domain Tresu_2229 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2237 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2240 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2269 SM00487 DEAD-like helicases superfamily Tresu_2269 SM00490 helicase superfamily c-terminal domain Tresu_2276 SM00363 S4 RNA-binding domain Tresu_2276 SM01390 Tresu_2276 Tresu_2278 SM00028 Tetratricopeptide repeats Tresu_2281 SM00100 Cyclic nucleotide-monophosphate binding domain Tresu_2286 SM00460 Transglutaminase/protease-like homologues Tresu_2289 SM01209 Tresu_2289 Tresu_2289 SM01210 Tresu_2289 Tresu_2295 SM00244 prohibitin homologues Tresu_2296 SM00244 prohibitin homologues Tresu_2310 SM00267 diguanylate cyclase Tresu_2315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tresu_2316 SM00382 ATPases associated with a variety of cellular activities Tresu_2330 SM00849 Metallo-beta-lactamase superfamily Tresu_2330 SM01027 Beta-Casp domain Tresu_2334 SM00382 ATPases associated with a variety of cellular activities Tresu_2336 SM01192 Tresu_2336 Tresu_2336 SM01193 Tresu_2336 Tresu_2341 SM00382 ATPases associated with a variety of cellular activities Tresu_2347 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Tresu_2347 SM01080 Tresu_2347 Tresu_2350 SM01007 Class II Aldolase and Adducin N-terminal domain Tresu_2353 SM00382 ATPases associated with a variety of cellular activities Tresu_2356 SM00342 helix_turn_helix, arabinose operon control protein Tresu_2359 SM00342 helix_turn_helix, arabinose operon control protein Tresu_2366 SM00563 Phosphate acyltransferases Tresu_2375 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tresu_2375 SM00478 endonuclease III Tresu_2375 SM00525 Tresu_2375 Tresu_2381 SM00382 ATPases associated with a variety of cellular activities Tresu_2386 SM00028 Tetratricopeptide repeats Tresu_2390 SM00382 ATPases associated with a variety of cellular activities Tresu_2395 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_2402 SM00257 Lysin motif Tresu_2404 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_2410 SM00028 Tetratricopeptide repeats Tresu_2415 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_2417 SM00481 DNA polymerase alpha chain like domain Tresu_2418 SM00448 cheY-homologous receiver domain Tresu_2420 SM00421 helix_turn_helix, Lux Regulon Tresu_2423 SM00116 Domain in cystathionine beta-synthase and other proteins. Tresu_2424 SM00382 ATPases associated with a variety of cellular activities Tresu_2425 SM00382 ATPases associated with a variety of cellular activities Tresu_2431 SM00662 RNA polymerases D Tresu_2444 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tresu_2445 SM01374 Tresu_2445 Tresu_2449 SM00322 K homology RNA-binding domain Tresu_2452 SM01382 Tresu_2452 Tresu_2452 SM01383 Tresu_2452 Tresu_2456 SM01403 Tresu_2456 Tresu_2460 SM00663 RNA polymerase I subunit A N-terminus Tresu_2465 SM00649 Ribosomal protein L11/L12 Tresu_2466 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Tresu_2466 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tresu_2482 SM00798 AICARFT/IMPCHase bienzyme Tresu_2485 SM00052 Putative diguanylate phosphodiesterase Tresu_2485 SM00267 diguanylate cyclase Tresu_2486 SM00729 Elongator protein 3, MiaB family, Radical SAM Tresu_2491 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tresu_2494 SM00354 helix_turn _helix lactose operon repressor Tresu_2501 SM00382 ATPases associated with a variety of cellular activities Tresu_2506 SM00382 ATPases associated with a variety of cellular activities Tresu_2506 SM00930 Tresu_2506 Tresu_2509 SM00900 Tresu_2509 Tresu_2512 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Tresu_2523 SM00382 ATPases associated with a variety of cellular activities Tresu_2523 SM00843 Tresu_2523 Tresu_2524 SM00636 Tresu_2524 Tresu_2527 SM00028 Tetratricopeptide repeats Tresu_2529 SM00344 helix_turn_helix ASNC type Tresu_2535 SM00487 DEAD-like helicases superfamily Tresu_2535 SM00490 helicase superfamily c-terminal domain Tresu_2548 SM00342 helix_turn_helix, arabinose operon control protein Tresu_2553 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2556 SM00316 Ribosomal protein S1-like RNA-binding domain Tresu_2559 SM00434 DNA Topoisomerase IV Tresu_2560 SM00387 Histidine kinase-like ATPases Tresu_2560 SM00433 TopoisomeraseII Tresu_2588 SM00327 von Willebrand factor (vWF) type A domain Tresu_2629 SM00382 ATPases associated with a variety of cellular activities Tresu_2635 SM00248 ankyrin repeats Tresu_2640 SM01324 Tresu_2640 Tresu_2641 SM01324 Tresu_2641 Tresu_2642 SM01324 Tresu_2642 Tresu_2643 SM01324 Tresu_2643 Tresu_2675 SM00635 Bacterial Ig-like domain 2 Tresu_2682 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tresu_2682 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tresu_2682 SM00493 Tresu_2682 Tresu_2689 SM00530 Helix-turn-helix XRE-family like proteins Tresu_2704 SM01126 Tresu_2704 Tresu_2714 SM00470 ParB-like nuclease domain Tresu_2720 SM00487 DEAD-like helicases superfamily Tresu_R0025 SM00530 Helix-turn-helix XRE-family like proteins