locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Tresu_0001 Tresu_0001 Tresu_0001 30 1487 + Chromosomal replication initiator protein dnaA COGs: COG0593 ATPase involved in DNA replication initiation~HAMAP: Chromosomal replication control%2C initiator DnaA~InterPro IPR001957:IPR013317:IPR013159:IPR003593~KEGG: ssm:Spirs_0001 chromosomal replication initiator protein DnaA~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda)%3B Chromosomal replication initiator%2C DnaA C-terminal~SMART: Chromosomal replication initiator%2C DnaA C-terminal%3B ATPase%2C AAA+ type%2C core~SPTR: Chromosomal replication initiator protein dnaA%3B~TIGRFAM: Chromosomal replication control%2C initiator DnaA~IMG reference gene:2504606902~PFAM: domain%3B Bacterial dnaA protein~TIGRFAM: chromosomal replication initiator protein DnaA gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0001 Tresu_0002 Tresu_0002 Tresu_0002 1780 2904 + DNA polymerase III%2C beta subunit COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)~InterPro IPR022634:IPR022637:IPR022635:IPR001001~KEGG: tde:TDE0231 DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III%2C beta chain%2C central%3B DNA polymerase III%2C beta chain%2C N-terminal%3B DNA polymerase III%2C beta chain%2C C-terminal~PRIAM: DNA-directed DNA polymerase~SMART: DNA polymerase III%2C beta chain~SPTR: DNA polymerase III%2C beta subunit%3B~TIGRFAM: DNA polymerase III%2C beta chain~IMG reference gene:2504606903~PFAM: DNA polymerase III beta subunit%2C C-terminal domain%3B DNA polymerase III beta subunit%2C N-terminal domain%3B DNA polymerase III beta subunit%2C central domain~TIGRFAM: DNA polymerase III%2C beta subunit gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0002 Tresu_0003 Tresu_0003 Tresu_0003 2922 4043 + DNA replication and repair protein RecF COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway)~InterPro IPR003395:IPR001238~KEGG: tde:TDE0230 DNA replication and repair protein RecF~PFAM: RecF/RecN/SMC~SPTR: DNA replication and repair protein recF%3B~TIGRFAM: DNA-binding%2C RecF~IMG reference gene:2504606904~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: recF protein gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0003 Tresu_0004 Tresu_0004 Tresu_0004 4040 4582 + protein of unknown function DUF721 InterPro IPR007922~KEGG: ssm:Spirs_0005 protein of unknown function DUF721~PFAM: Protein of unknown function DUF721/UPF0232~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606905~PFAM: Protein of unknown function (DUF721) gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0004 Tresu_0005 Tresu_0005 Tresu_0005 4639 4794 + 50S ribosomal protein L34 HAMAP: Ribosomal protein L34~InterPro IPR000271~KEGG: bga:BG0447 50S ribosomal protein L34~PFAM: Ribosomal protein L34~SPTR: 50S ribosomal protein L34%3B~TIGRFAM: Ribosomal protein L34~IMG reference gene:2504606906~PFAM: Ribosomal protein L34~TIGRFAM: ribosomal protein L34%2C bacterial type gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0005 Tresu_0006 Tresu_0006 Tresu_0006 5195 5392 + UPF0161 protein yidD COGs: COG0759 conserved hypothetical protein~HAMAP: Protein of unknown function DUF37~InterPro IPR002696~KEGG: bth:BT_3228 hypothetical protein~PFAM: Protein of unknown function DUF37~SPTR: UPF0161 protein HMPREF9010_00622%3B~TIGRFAM: Protein of unknown function DUF37~manually curated~IMG reference gene:2504606907~PFAM: Domain of unknown function DUF37~TIGRFAM: conserved hypothetical protein YidD gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0006 Tresu_0007 Tresu_0007 Tresu_0007 5414 7222 + Membrane protein oxaA COGs: COG0706 Preprotein translocase subunit YidC~HAMAP: Membrane insertion protein%2C OxaA/YidC%2C bacterial~InterPro IPR019998:IPR001708~KEGG: tde:TDE2396 putative inner membrane protein translocase component YidC~PFAM: Membrane insertion protein%2C OxaA/YidC~SPTR: Inner membrane protein oxaA%3B~TIGRFAM: Membrane insertion protein%2C OxaA/YidC%3B Membrane insertion protein%2C OxaA/YidC%2C bacterial~IMG reference gene:2504606908~PFAM: 60Kd inner membrane protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain%3B membrane protein insertase%2C YidC/Oxa1 family%2C N-terminal domain gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0007 Tresu_0008 Tresu_0008 Tresu_0008 7246 7962 + single-stranded nucleic acid binding R3H domain-containing protein COGs: COG1847 RNA-binding protein~InterPro IPR001374~KEGG: ssm:Spirs_0009 single-stranded nucleic acid binding R3H domain protein~PFAM: Single-stranded nucleic acid binding R3H~SMART: Single-stranded nucleic acid binding R3H~SPTR: Protein jag%3B~IMG reference gene:2504606909~PFAM: R3H domain gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0008 Tresu_0009 Tresu_0009 Tresu_0009 7993 8769 + hypothetical protein KEGG: tde:TDE2392 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606910 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0009 Tresu_0010 Tresu_0010 Tresu_0010 8784 9806 + peptidyl-prolyl cis-trans isomerase cyclophilin type COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family~InterPro IPR002130:IPR001179~KEGG: tde:TDE2391 peptidyl-prolyl cis-trans isomerase~PFAM: Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2504606911~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase%3B Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0010 Tresu_0011 Tresu_0011 Tresu_0011 10034 10567 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: mmp:MMP1184 N-acetyltransferase-like protein~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: N-acetyltransferase related protein%3B~IMG reference gene:2504606912~PFAM: Acetyltransferase (GNAT) family gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0011 Tresu_0012 Tresu_0012 Tresu_0012 10570 11325 + hypothetical protein KEGG: tde:TDE0620 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606913 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0012 Tresu_0013 Tresu_0013 Tresu_0013 11322 12704 - transcriptional regulator%2C GntR family COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs~InterPro IPR000524~KEGG: bwe:BcerKBAB4_0496 transcriptional regulator~PFAM: HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606914~PFAM: Bacterial regulatory proteins%2C gntR family gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0013 Tresu_0014 Tresu_0014 Tresu_0014 12750 13154 - cytidine deaminase COGs: COG0295 Cytidine deaminase~InterPro IPR002125:IPR006262~KEGG: bpb:bpr_I1556 cytidine deaminase Cdd~PFAM: CMP/dCMP deaminase%2C zinc-binding~PRIAM: Cytidine deaminase~SPTR: Cytidine deaminase%3B~TIGRFAM: Cytidine deaminase%2C homotetrameric~IMG reference gene:2504606915~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region~TIGRFAM: cytidine deaminase%2C homotetrameric gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0014 Tresu_0015 Tresu_0015 Tresu_0015 13154 13465 - protein of unknown function UPF0044 COGs: COG1534 RNA-binding protein containing KH domain possibly ribosomal protein~InterPro IPR001890~KEGG: hau:Haur_3572 hypothetical protein~PFAM: RNA-binding%2C CRM domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606916~PFAM: CRS1 / YhbY (CRM) domain~TIGRFAM: putative RNA-binding protein%2C YhbY family gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0015 Tresu_0016 Tresu_0016 Tresu_0016 13497 14246 - Conserved hypothetical protein CHP02757 InterPro IPR014127~KEGG: pmz:HMPREF0659_A5225 conserved hypothetical protein TIGR02757~PFAM: Conserved hypothetical protein CHP02757~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP02757~IMG reference gene:2504606917~PFAM: Protein of unknown function (DUF2400)~TIGRFAM: TIGR02757 family protein gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0016 Tresu_0017 Tresu_0017 Tresu_0017 14452 14826 + hypothetical protein IMG reference gene:2504606918 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0017 Tresu_0018 Tresu_0018 Tresu_0018 14879 16198 + carbamoyl-phosphate synthase%2C small subunit COGs: COG0505 Carbamoylphosphate synthase small subunit~InterPro IPR002474:IPR000991:IPR006274~KEGG: eel:EUBELI_20411 carbamoyl phosphate synthase small subunit~PFAM: Carbamoyl-phosphate synthase%2C small subunit%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing)~SPTR: Carbamoyl-phosphate synthase%2C small subunit%3B~TIGRFAM: Carbamoyl-phosphate synthase%2C small subunit~IMG reference gene:2504606919~PFAM: Carbamoyl-phosphate synthase small chain%2C CPSase domain%3B Glutamine amidotransferase class-I~TIGRFAM: carbamoyl-phosphate synthase%2C small subunit gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0018 Tresu_0019 Tresu_0019 Tresu_0019 16260 20495 + Diaminopimelate epimerase COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)~HAMAP: Diaminopimelate epimerase~InterProIPR001653:IPR005481:IPR005479:IPR005480:IPR 011607:IPR006275~KEGG: elm:ELI_3885 carbamoyl-phosphate synthase large subunit~PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Carbamoyl-phosphate synthetase%2C large subunit%2C oligomerisation%3B Methylglyoxal synthase-like domain%3B Diaminopimelate epimerase~PRIAM: Carbamoyl-phosphate synthase (ammonia).%2C Diaminopimelate epimerase~SMART: Methylglyoxal synthase-like domain~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Carbamoyl-phosphate synthase%2C large subunit%3B Diaminopimelate epimerase~IMG reference gene:2504606920~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B MGS-like domain%3B Carbamoyl-phosphate synthetase large chain%2C oligomerisation domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain%3B Diaminopimelate epimerase~TIGRFAM: diaminopimelate epimerase%3B carbamoyl-phosphate synthase%2C large subunit gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0019 Tresu_0020 Tresu_0020 Tresu_0020 20569 22464 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: tde:TDE0850 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504606921~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0020 Tresu_0021 Tresu_0021 Tresu_0021 22568 24772 - Conserved hypothetical protein CHP03545 InterPro IPR019934~KEGG: tde:TDE1580 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP03545~IMG reference gene:2504606922~TIGRFAM: TIGR03545 family protein gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0021 Tresu_0022 Tresu_0022 Tresu_0022 24769 25290 - Conserved hypothetical protein CHP03546 InterPro IPR019935~KEGG: ssm:Spirs_0913 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP03546~IMG reference gene:2504606923~TIGRFAM: TIGR03546 family protein gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0022 Tresu_0023 Tresu_0023 Tresu_0023 25526 26461 + NMT1/THI5 like domain protein COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components~InterPro IPR015168~KEGG: ssm:Spirs_3152 NMT1/THI5 like domain protein~SPTR: NMT1/THI5 like domain protein%3B~IMG reference gene:2504606925~PFAM: NMT1/THI5 like gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0023 Tresu_0024 Tresu_0024 Tresu_0024 26454 27917 + ABC transporter related protein COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component~InterPro IPR000515:IPR003439:IPR003593~KEGG: pdi:BDI_1370 putative ABC transporter~PFAM: ABC transporter-like%3B Binding-protein-dependent transport systems inner membrane component~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606926~PFAM: ABC transporter gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0024 Tresu_0025 Tresu_0025 Tresu_0025 27958 29430 + YjeF-related protein COGs: COG0063 sugar kinase~InterPro IPR004443:IPR000631~KEGG: ant:Arnit_0316 carbohydrate kinase~PFAM: YjeF-related protein%2C N-terminal%3B Uncharacterised protein family%2C carbohydrate kinase-related~SPTR: Preprotein translocase%2C YajC subunit%3B~TIGRFAM: Uncharacterised protein family%2C carbohydrate kinase-related%3B YjeF-related protein%2C N-terminal~IMG reference gene:2504606927~PFAM: Carbohydrate kinase%3B YjeF-related protein N-terminus~TIGRFAM: yjeF C-terminal region%2C hydroxyethylthiazole kinase-related%3B yjeF N-terminal region gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0025 Tresu_0026 Tresu_0026 Tresu_0026 29452 29820 + LrgA family protein COGs: COG1380 Putative effector of murein hydrolase LrgA~InterPro IPR005538~KEGG: eel:EUBELI_00436 holin-like protein~PFAM: Uncharacterised protein family LrgA/YohJ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606928~PFAM: LrgA family gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0026 Tresu_0027 Tresu_0027 Tresu_0027 29823 30518 + LrgB family protein COGs: COG1346 Putative effector of murein hydrolase~InterPro IPR007300~KEGG: cpy:Cphy_0707 LrgB family protein~PFAM: LrgB-like protein~SPTR: Putative effector of murein hydrolase%3B~IMG reference gene:2504606929~PFAM: LrgB-like family~TIGRFAM: TIGR00659 family protein gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0027 Tresu_0028 Tresu_0028 Tresu_0028 30651 31484 + Glutamate 5-kinase COGs: COG0263 Glutamate 5-kinase~HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase~InterPro IPR005715:IPR001048~KEGG: amt:Amet_3645 glutamate 5-kinase~PFAM: Aspartate/glutamate/uridylate kinase~SPTR: Glutamate 5-kinase%3B~TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase~IMG reference gene:2504606930~PFAM: Amino acid kinase family~TIGRFAM: glutamate 5-kinase gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0028 Tresu_0029 Tresu_0029 Tresu_0029 31481 32260 + pyrroline-5-carboxylate reductase COGs: COG0345 Pyrroline-5-carboxylate reductase~InterPro IPR004455:IPR000304~KEGG: cpy:Cphy_2914 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase%2C coenzyme F420-dependent~PRIAM: Pyrroline-5-carboxylate reductase~SPTR: Pyrroline-5-carboxylate reductase%3B~TIGRFAM: Pyrroline-5-carboxylate reductase~IMG reference gene:2504606931~PFAM: NADP oxidoreductase coenzyme F420-dependent~TIGRFAM: pyrroline-5-carboxylate reductase gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0029 Tresu_0030 Tresu_0030 Tresu_0030 32263 33084 - GCN5-related N-acetyltransferase COGs: COG3393 acetyltransferase~InterPro IPR000182~KEGG: tde:TDE0023 acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Acetyltransferase%2C GNAT family%3B~IMG reference gene:2504606932~PFAM: FR47-like protein gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0030 Tresu_0031 Tresu_0031 Tresu_0031 33087 34505 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: tde:TDE0621 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Mate efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504606933~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0031 Tresu_0032 Tresu_0032 Tresu_0032 34525 35991 + OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE1992 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504606934~PFAM: OmpA family gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0032 Tresu_0033 Tresu_0033 Tresu_0033 35997 36467 + protein tyrosine phosphatase COGs: COG0394 Protein-tyrosine-phosphatase~InterPro IPR017867~KEGG: clj:CLJU_c14630 low molecular weight protein-tyrosine-phosphatase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~PRIAM: Acid phosphatase~SMART: Protein-tyrosine phosphatase%2C low molecular weight~SPTR: Protein-tyrosine-phosphatase%3B~IMG reference gene:2504606935~PFAM: Low molecular weight phosphotyrosine protein phosphatase gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0033 Tresu_0034 Tresu_0034 Tresu_0034 36555 37472 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847~KEGG: fsu:Fisuc_1099 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606936~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0034 Tresu_0035 Tresu_0035 Tresu_0035 37581 38861 + O-acetylhomoserine/O-acetylserine sulfhydrylase COGs: COG2873 O-acetylhomoserine sulfhydrylase~InterPro IPR000277:IPR006235~KEGG: bpb:bpr_I2467 OAH/OAS sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme~PRIAM: Cysteine synthase~SPTR: O-acetylhomoserine sulfhydrolase%3B~TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~IMG reference gene:2504606937~PFAM: Cys/Met metabolism PLP-dependent enzyme~TIGRFAM: OAH/OAS sulfhydrylase gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0035 Tresu_0036 Tresu_0036 Tresu_0036 39026 39904 + Pyridoxal biosynthesis lyase pdxS COGs: COG0214 Pyridoxine biosynthesis enzyme~HAMAP: Vitamin B6 biosynthesis protein~InterPro IPR001852~KEGG: ere:EUBREC_2951 pyridoxal biosynthesis lyase PdxS~PFAM: Vitamin B6 biosynthesis protein~SPTR: Pyridoxal biosynthesis lyase pdxS%3B~TIGRFAM: Vitamin B6 biosynthesis protein~IMG reference gene:2504606938~PFAM: SOR/SNZ family~TIGRFAM: pyridoxal 5'-phosphate synthase%2C synthase subunit Pdx1 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0036 Tresu_0037 Tresu_0037 Tresu_0037 39901 40458 + pyridoxal 5'-phosphate synthase%2C glutaminase subunit Pdx2 COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis~InterPro IPR002161~KEGG: dhd:Dhaf_1078 glutamine amidotransferase subunit PdxT~PFAM: Glutamine amidotransferase subunit PdxT~SPTR: Glutamine amidotransferase subunit pdxT%3B~TIGRFAM: Glutamine amidotransferase subunit PdxT~IMG reference gene:2504606939~PFAM: SNO glutamine amidotransferase family~TIGRFAM: pyridoxal 5'-phosphate synthase%2C glutaminase subunit Pdx2 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0037 Tresu_0038 Tresu_0038 Tresu_0038 40468 42009 - phospholipase D/Transphosphatidylase COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase~InterPro IPR001736~KEGG: cac:CA_C3316 cardiolipin synthase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606940~PFAM: Phospholipase D Active site motif gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0038 Tresu_0039 Tresu_0039 Tresu_0039 42203 46144 + phosphoribosylformylglycinamidine synthase COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain~InterPro IPR010918:IPR010141~KEGG: tjr:TherJR_0822 phosphoribosylformylglycinamidine synthase~PFAM: AIR synthase-related protein%2C C-terminal~PRIAM: Phosphoribosylformylglycinamidine synthase~SPTR: Phosphoribosylformylglycinamidine synthase%3B~TIGRFAM: Phosphoribosylformylglycinamidine synthase%2C FGAM~IMG reference gene:2504606941~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylformylglycinamidine synthase%2C clade II gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0039 Tresu_0040 Tresu_0040 Tresu_0040 46161 47144 + hypothetical protein KEGG: amu:Amuc_0147 thioredoxin domain~SPTR: Putative lipoprotein%3B~IMG reference gene:2504606942 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0040 Tresu_0041 Tresu_0041 Tresu_0041 47144 48418 + protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR002550:IPR000644:IPR005170~KEGG: cno:NT01CX_1509 integral membrane protein~PFAM: Domain of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated domain~SPTR: Integral membrane protein with CBS domains%3B~IMG reference gene:2504606943~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0041 Tresu_0042 Tresu_0042 Tresu_0042 48415 49680 + protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR002550:IPR000644:IPR005170~KEGG: aar:Acear_0620 protein of unknown function DUF21~PFAM: Domain of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated domain~SMART: Cystathionine beta-synthase%2C core~SPTR: Hemolysins and related proteins containing CBS domains%3B~IMG reference gene:2504606944~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0042 Tresu_0043 Tresu_0043 Tresu_0043 49675 50325 - putative cytidylate kinase KEGG: bpo:BP951000_2108 putative cytidylate kinase~SPTR: Cytidylate kinase%3B~IMG reference gene:2504606945 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0043 Tresu_0044 Tresu_0044 Tresu_0044 50395 51141 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tde:TDE2576 RNA pseudouridylate synthase family protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Ribosomal large subunit pseudouridine synthase D%3B~IMG reference gene:2504606946~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0044 Tresu_0045 Tresu_0045 Tresu_0045 51186 51956 - Iron-chelate-transporting ATPase COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003439:IPR003593~KEGG: cdl:CDR20291_2832 putative iron ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Iron-chelate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative iron ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504606947~PFAM: ABC transporter gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0045 Tresu_0046 Tresu_0046 Tresu_0046 51944 52912 - ABC-type transporter%2C integral membrane subunit COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: aar:Acear_0769 transport system permease protein~PFAM: ABC transporter permease protein~SPTR: Transport system permease protein%3B~IMG reference gene:2504606948~PFAM: FecCD transport family gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0046 Tresu_0047 Tresu_0047 Tresu_0047 52921 53763 - ABC-type transporter%2C periplasmic subunit COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: hau:Haur_1056 periplasmic binding protein~PFAM: Periplasmic binding protein~SPTR: Periplasmic binding protein%3B~IMG reference gene:2504606949~PFAM: Periplasmic binding protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0047 Tresu_0048 Tresu_0048 Tresu_0048 53764 54450 - orotate phosphoribosyltransferase COGs: COG0461 Orotate phosphoribosyltransferase~InterPro IPR000836:IPR004467~KEGG: csh:Closa_1601 orotate phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~PRIAM: Orotate phosphoribosyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Orotate phosphoribosyl transferase%2C clade 1~IMG reference gene:2504606950~PFAM: Phosphoribosyl transferase domain~TIGRFAM: orotate phosphoribosyltransferase gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0048 Tresu_0049 Tresu_0049 Tresu_0049 54538 56964 - glycosyltransferase 36 COGs: COG3459 Cellobiose phosphorylase~InterPro IPR009342:IPR010383:IPR010403~KEGG: ote:Oter_2310 glycosyltransferase 36~PFAM: Glycosyltransferase 36%3B Putative carbohydrate binding%3B Glycosyltransferase 36 associated~SPTR: Glycosyltransferase 36%3B~IMG reference gene:2504606951~PFAM: Glycosyltransferase family 36%3B Putative carbohydrate binding domain%3B Glycosyltransferase 36 associated family gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0049 Tresu_0050 Tresu_0050 Tresu_0050 57247 58551 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: sta:STHERM_c18530 multiple sugar binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Multiple sugar binding protein%3B~IMG reference gene:2504606952~PFAM: Bacterial extracellular solute-binding protein gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0050 Tresu_0051 Tresu_0051 Tresu_0051 58653 59612 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: tpd:Teth39_2057 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar ABC transporter permease%3B~IMG reference gene:2504606953~PFAM: Binding-protein-dependent transport system inner membrane component gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0051 Tresu_0052 Tresu_0052 Tresu_0052 59628 60467 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: pjd:Pjdr2_5596 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504606954~PFAM: Binding-protein-dependent transport system inner membrane component gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0052 Tresu_0053 Tresu_0053 Tresu_0053 60492 62087 + Xylan 1%2C4-beta-xylosidase COGs: COG3507 Beta-xylosidase~InterPro IPR006710~KEGG: sta:STHERM_c18500 beta-xylosidase~PFAM: Glycoside hydrolase%2C family 43~PRIAM: Xylan 1%2C4-beta-xylosidase~SPTR: Beta-xylosidase%3B~IMG reference gene:2504606955~PFAM: Glycosyl hydrolases family 43 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0053 Tresu_0054 Tresu_0054 Tresu_0054 62207 63220 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: eat:EAT1b_2179 transcriptional regulator%2C LacI family~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Alanine racemase%3B~IMG reference gene:2504606956~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0054 Tresu_0055 Tresu_0055 Tresu_0055 63386 63697 + UPF0133 protein ybaB COGs: COG0718 conserved hypothetical protein~HAMAP: Uncharacterised protein family UPF0133~InterPro IPR004401~KEGG: aar:Acear_0031 hypothetical protein~PFAM: Uncharacterised protein family UPF0133~SPTR: UPF0133 protein TREVI0001_0080%3B~TIGRFAM: Uncharacterised protein family UPF0133~IMG reference gene:2504606958~PFAM: Uncharacterised BCR%2C YbaB family COG0718~TIGRFAM: DNA-binding protein%2C YbaB/EbfC family gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0055 Tresu_0056 Tresu_0056 Tresu_0056 63701 64288 + Recombination protein recR COGs: COG0353 Recombinational DNA repair protein (RecF pathway)~HAMAP: RecR protein~InterPro IPR000093:IPR015967:IPR006171~KEGG: ssm:Spirs_0086 recombination protein RecR~PFAM: Toprim domain%3B Zinc finger C4-type%2C RecR~SMART: Toprim domain~SPTR: Recombination protein RecR%3B~TIGRFAM: RecR protein~IMG reference gene:2504606959~PFAM: Toprim domain%3B RecR protein~TIGRFAM: recombination protein RecR gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0056 Tresu_0057 Tresu_0057 Tresu_0057 64344 65312 + hypothetical protein IMG reference gene:2504606960 gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0057 Tresu_0058 Tresu_0058 Tresu_0058 65309 67213 + hypothetical protein KEGG: tde:TDE0867 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504606961 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0058 Tresu_0059 Tresu_0059 Tresu_0059 67210 68478 - Ste24 endopeptidase COGs: COG0501 Zn-dependent protease with chaperone function~InterPro IPR001915~KEGG: geo:Geob_0885 STE24 endopeptidase~PFAM: Peptidase M48~PRIAM: Ste24 endopeptidase~SPTR: Ste24 endopeptidase%3B~IMG reference gene:2504606962~PFAM: Peptidase family M48 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0059 Tresu_0060 Tresu_0060 Tresu_0060 68475 69137 - Ribosomal RNA small subunit methyltransferase G COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division~HAMAP: rRNA small subunit methyltransferase G~InterPro IPR003682~KEGG: tde:TDE2513 glucose-inhibited division protein B~PFAM: rRNA small subunit methyltransferase G~SPTR: Ribosomal RNA small subunit methyltransferase G%3B~TIGRFAM: rRNA small subunit methyltransferase G~IMG reference gene:2504606963~PFAM: rRNA small subunit methyltransferase G~TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0060 Tresu_0061 Tresu_0061 Tresu_0061 69140 70024 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606964 gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0061 Tresu_0062 Tresu_0062 Tresu_0062 70011 70820 - hypothetical protein KEGG: tde:TDE0304 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606965 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0062 Tresu_0063 Tresu_0063 Tresu_0063 71082 72047 + Hsp33 protein COGs: COG1281 Disulfide bond chaperones of the HSP33 family~InterPro IPR000397~KEGG: tde:TDE2554 heat shock protein 34~PFAM: Heat shock protein Hsp33 protein~SPTR: Chaperonin%2C 33 kDa family%3B~IMG reference gene:2504606966~PFAM: Hsp33 protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0063 Tresu_0064 Tresu_0064 Tresu_0064 72308 73762 + carboxyl-terminal protease COGs: COG0793 Periplasmic protease~InterPro IPR001478:IPR005151:IPR004447~KEGG: tpp:TPASS_0277 carboxyl-terminal protease~PFAM: Peptidase S41%3B PDZ/DHR/GLGF~SMART: Peptidase S41%3B PDZ/DHR/GLGF~SPTR: Carboxy--processing protease%3B~TIGRFAM: Peptidase S41A%2C C-terminal peptidase~IMG reference gene:2504606967~PFAM: Peptidase family S41%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: C-terminal peptidase (prc) gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0064 Tresu_0065 Tresu_0065 Tresu_0065 73759 74568 + Ribosomal RNA small subunit methyltransferase E COGs: COG1385 conserved hypothetical protein~InterPro IPR006700~KEGG: tde:TDE1877 16S ribosomal RNA methyltransferase RsmE~PFAM: Ribosomal RNA small subunit methyltransferase E~SPTR: RNA methyltransferase family protein%3B~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~IMG reference gene:2504606968~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0065 Tresu_0066 Tresu_0066 Tresu_0066 74570 75310 + glycosyl transferase%2C WecB/TagA/CpsF family COGs: COG1922 Teichoic acid biosynthesis protein~InterPro IPR004629~KEGG: tde:TDE1876 WecB/TagA/CpsF family glycosyl transferase~PFAM: Glycosyl transferase WecB/TagA/CpsF~SPTR: Glycosyl transferase%2C WecB/TagA/CpsF family%3B~TIGRFAM: Glycosyl transferase WecB/TagA/CpsF~IMG reference gene:2504606969~PFAM: Glycosyl transferase WecB/TagA/CpsF family~TIGRFAM: bacterial polymer biosynthesis proteins%2C WecB/TagA/CpsF family gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0066 Tresu_0067 Tresu_0067 Tresu_0067 75317 76378 + Sigma 54 interacting domain protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR002078:IPR003593~KEGG: tye:THEYE_A1802 SasR~PFAM: RNA polymerase sigma factor 54%2C interaction~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606970~PFAM: Sigma-54 interaction domain gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0067 Tresu_0068 Tresu_0068 Tresu_0068 76365 77093 - tRNA/rRNA methyltransferase (SpoU) COGs: COG0565 rRNA methylase~InterPro IPR001537~KEGG: ssm:Spirs_2304 RNA methyltransferase%2C TrmH family%2C group 1~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%2C group 1%3B~IMG reference gene:2504606971~PFAM: SpoU rRNA Methylase family~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 1 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0068 Tresu_0069 Tresu_0069 Tresu_0069 77106 77654 - anti-sigma-factor antagonist COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)~InterPro IPR002645:IPR003658~KEGG: ssm:Spirs_0140 anti-sigma-factor antagonist~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~TIGRFAM: Anti-sigma factor antagonist~IMG reference gene:2504606972~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0069 Tresu_0070 Tresu_0070 Tresu_0070 77845 79158 + Histidinol dehydrogenase COGs: COG0141 Histidinol dehydrogenase~HAMAP: Histidinol dehydrogenase%2C prokaryotic-type~InterPro IPR012131~KEGG: cdl:CDR20291_1479 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase%2C prokaryotic-type~PRIAM: Histidinol dehydrogenase~SPTR: Histidinol dehydrogenase%3B~TIGRFAM: Histidinol dehydrogenase%2C prokaryotic-type~IMG reference gene:2504606973~PFAM: Histidinol dehydrogenase~TIGRFAM: histidinol dehydrogenase gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0070 Tresu_0071 Tresu_0071 Tresu_0071 79178 79756 + Peptide deformylase COGs: COG0242 N-formylmethionyl-tRNA deformylase~HAMAP: Formylmethionine deformylase~InterPro IPR000181~KEGG: ssm:Spirs_1654 peptide deformylase~PFAM: Formylmethionine deformylase~SPTR: Peptide deformylase 1%3B~TIGRFAM: Formylmethionine deformylase~IMG reference gene:2504606974~PFAM: Polypeptide deformylase~TIGRFAM: peptide deformylase gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0071 Tresu_0072 Tresu_0072 Tresu_0072 79757 80770 + Methionyl-tRNA formyltransferase COGs: COG0223 Methionyl-tRNA formyltransferase~HAMAP: Methionyl-tRNA formyltransferase~InterPro IPR005794:IPR002376:IPR005793~KEGG: tde:TDE1644 methionyl-tRNA formyltransferase~PFAM: Formyl transferase%2C C-terminal%3B Formyl transferase%2C N-terminal~PRIAM: Methionyl-tRNA formyltransferase~SPTR: Methionyl-tRNA formyltransferase%3B~TIGRFAM: Methionyl-tRNA formyltransferase~IMG reference gene:2504606975~PFAM: Formyl transferase%3B Formyl transferase%2C C-terminal domain~TIGRFAM: methionyl-tRNA formyltransferase gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0072 Tresu_0073 Tresu_0073 Tresu_0073 80774 81805 + PASTA domain containing protein COGs: COG2815 conserved hypothetical protein~InterPro IPR005543~KEGG: tde:TDE1643 PASTA domain-containing protein~PFAM: PASTA~SMART: PASTA~SPTR: PASTA domain protein%3B~IMG reference gene:2504606976~PFAM: PASTA domain gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0073 Tresu_0074 Tresu_0074 Tresu_0074 81993 83339 - Acetate kinase COGs: COG0282 Acetate kinase~HAMAP: Acetate kinase~InterPro IPR004372:IPR000890~KEGG: tpp:TPASS_0476 acetate kinase~PFAM: Acetate/butyrate kinase~PRIAM: Acetate kinase~SPTR: Acetate kinase%3B~TIGRFAM: Acetate kinase~IMG reference gene:2504606977~PFAM: Acetokinase family~TIGRFAM: acetate kinase gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0074 Tresu_0075 Tresu_0075 Tresu_0075 83488 84591 + putative leucyl aminopeptidase COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T)~KEGG: sta:STHERM_c01250 putative leucyl aminopeptidase~SPTR: Putative leucyl aminopeptidase%3B~IMG reference gene:2504606978~PFAM: Thermophilic metalloprotease (M29) gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0075 Tresu_0076 Tresu_0076 Tresu_0076 84596 85438 - ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003439:IPR003593~KEGG: cch:Cag_1079 ATPase~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC-type cobalamin/Fe3+-siderophores transport system%2C ATPase component%3B~IMG reference gene:2504606979~PFAM: ABC transporter gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0076 Tresu_0077 Tresu_0077 Tresu_0077 85512 87578 + Alpha-L-fucosidase KEGG: cpy:Cphy_0874 hypothetical protein~PRIAM: Alpha-L-fucosidase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606980 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0077 Tresu_0078 Tresu_0078 Tresu_0078 87636 88559 + Aspartate carbamoyltransferase COGs: COG0540 Aspartate carbamoyltransferase catalytic chain~HAMAP: Aspartate carbamoyltransferase%2C eukaryotic~InterPro IPR002082:IPR006132:IPR006131~KEGG: cbk:CLL_A2581 aspartate carbamoyltransferase catalytic subunit~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain~PRIAM: Aspartate carbamoyltransferase~SPTR: Aspartate carbamoyltransferase%3B~TIGRFAM: Aspartate carbamoyltransferase%2C eukaryotic~IMG reference gene:2504606981~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: aspartate carbamoyltransferase gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0078 Tresu_0079 Tresu_0079 Tresu_0079 88559 88996 + Aspartate carbamoyltransferase regulatory subunit COGs: COG1781 Aspartate carbamoyltransferase regulatory subunit~InterPro IPR020545~KEGG: cbf:CLI_3379 aspartate carbamoyltransferase regulatory subunit~PFAM: Aspartate carbamoyltransferase regulatory subunit%2C N-terminal~SPTR: Aspartate carbamoyltransferase regulatory chain%3B~IMG reference gene:2504606982~PFAM: Aspartate carbamoyltransferase regulatory chain%2C metal binding domain%3B Aspartate carbamoyltransferase regulatory chain%2C allosteric domain~TIGRFAM: aspartate carbamoyltransferase%2C regulatory subunit gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0079 Tresu_0080 Tresu_0080 Tresu_0080 89222 90199 - Biotin synthase COGs: COG0502 Biotin synthase~HAMAP: Biotin synthase~InterPro IPR002684:IPR007197:IPR010722:IPR006638~KEGG: cno:NT01CX_1470 biotin synthase~PFAM: Biotin/thiamin synthesis-associated protein%3B Radical SAM~PRIAM: Biotin synthase~SMART: Elongator protein 3/MiaB/NifB%3B Biotin/thiamin synthesis-associated protein~SPTR: Biotin synthase%3B~TIGRFAM: Biotin synthase~IMG reference gene:2504606983~PFAM: Radical SAM superfamily%3B Biotin and Thiamin Synthesis associated domain~TIGRFAM: biotin synthetase gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0080 Tresu_0081 Tresu_0081 Tresu_0081 90192 90881 - hypothetical protein KEGG: lsp:Bsph_4585 cobalt import ATP-binding/permease protein~SPTR: YbaF%3B~IMG reference gene:2504606984~PFAM: Cobalt transport protein gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0081 Tresu_0082 Tresu_0082 Tresu_0082 90872 91588 - Polyamine-transporting ATPase COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tde:TDE1650 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504606985~PFAM: ABC transporter gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0082 Tresu_0083 Tresu_0083 Tresu_0083 91592 92164 - BioY protein COGs: COG1268 conserved hypothetical protein~InterPro IPR003784~KEGG: tde:TDE1651 BioY family protein~PFAM: BioY protein~SPTR: BioY family protein%3B~IMG reference gene:2504606986~PFAM: BioY family gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0083 Tresu_0084 Tresu_0084 Tresu_0084 92332 92922 - hypothetical protein IMG reference gene:2504606987 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0084 Tresu_0085 Tresu_0085 Tresu_0085 93052 93993 - biotin/acetyl-CoA-carboxylase ligase COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase~InterPro IPR013196:IPR004143:IPR004408~KEGG: dal:Dalk_0376 biotin/acetyl-CoA-carboxylase ligase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase~IMG reference gene:2504606988~PFAM: HTH domain%3B Biotin/lipoate A/B protein ligase family~TIGRFAM: birA%2C biotin-[acetyl-CoA-carboxylase] ligase region%3B BirA biotin operon repressor domain gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0085 Tresu_0086 Tresu_0086 Tresu_0086 94030 94923 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: fsu:Fisuc_1883 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~SPTR: LysR transcriptional regulator%3B~IMG reference gene:2504606989~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0086 Tresu_0087 Tresu_0087 Tresu_0087 95021 95314 + hypothetical protein KEGG: ele:Elen_0955 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606990 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0087 Tresu_0088 Tresu_0088 Tresu_0088 95311 95562 + hypothetical protein SPTR: Lysophospholipase L1 and related esterases%3B~IMG reference gene:2504606991 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0088 Tresu_0089 Tresu_0089 Tresu_0089 95590 95868 + hypothetical protein IMG reference gene:2504606992 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0089 Tresu_0090 Tresu_0090 Tresu_0090 95865 96884 - PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: rsd:TGRD_070 2-dehydro-3-deoxygluconokinase~PFAM: Carbohydrate/purine kinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606993~PFAM: pfkB family carbohydrate kinase gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0090 Tresu_0091 Tresu_0091 Tresu_0091 96886 97905 - pseudogene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0091 Tresu_0092 Tresu_0092 Tresu_0092 98404 99330 + protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: cbe:Cbei_3435 hypothetical protein~PFAM: Drug/metabolite transporter~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504606995~PFAM: EamA-like transporter family gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0092 Tresu_0093 Tresu_0093 Tresu_0093 99364 100854 - glutamate synthase (NADPH)%2C homotetrameric COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase~InterPro IPR013027:IPR006004~KEGG: tde:TDE0407 putative oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Glutamate synthase (NADPH)~SPTR: Glutamate synthase (NADPH)%2C homotetrameric%3B~TIGRFAM: Glutamate synthase (NADPH)%2C homotetrameric~IMG reference gene:2504606996~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: glutamate synthase (NADPH)%2C homotetrameric gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0093 Tresu_0094 Tresu_0094 Tresu_0094 100873 101700 - oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterPro IPR001433:IPR019480~KEGG: tde:TDE0408 ferredoxin-NADP(+) reductase subunit alpha~PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: Oxidoreductase%2C NAD-binding%3B~IMG reference gene:2504606997~PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0094 Tresu_0095 Tresu_0095 Tresu_0095 101856 102830 - hypothetical protein IMG reference gene:2504606998 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0095 Tresu_0096 Tresu_0096 Tresu_0096 103179 104657 - Ferredoxin hydrogenase COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterPro IPR001450:IPR004108~KEGG: tde:TDE1277 Fe-hydrogenase large subunit family protein~PFAM: Iron hydrogenase%2C large subunit%2C C-terminal%3B 4Fe-4S binding domain~PRIAM: Ferredoxin hydrogenase~SPTR: Fe-hydrogenase large subunit family protein%3B~IMG reference gene:2504606999~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B 4Fe-4S binding domain gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0096 Tresu_0097 Tresu_0097 Tresu_0097 104925 105605 - MgtC/SapB transporter COGs: COG1285 membrane protein~InterPro IPR003416~KEGG: sth:STH1511 magnesium transporter~PFAM: MgtC/SapB transporter~SPTR: Magnesium transporter%3B~IMG reference gene:2504607000~PFAM: MgtC family gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0097 Tresu_0098 Tresu_0098 Tresu_0098 105618 106508 - hypothetical protein KEGG: tde:TDE2545 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607001 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0098 Tresu_0099 Tresu_0099 Tresu_0099 106733 107968 + pseudogene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0099 Tresu_0100 Tresu_0100 Tresu_0100 107999 108787 + hypothetical protein KEGG: tdn:Suden_0238 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607003 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0100 Tresu_0101 Tresu_0101 Tresu_0101 108953 110629 + protein of unknown function DUF87 COGs: COG0433 ATPase~InterPro IPR002789~KEGG: tdn:Suden_0239 hypothetical protein~PFAM: Domain of unknown function DUF87~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607004~PFAM: Domain of unknown function DUF87%3B Bacterial protein of unknown function (DUF853) gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0101 Tresu_0102 Tresu_0102 Tresu_0102 110981 112372 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: elm:ELI_2729 hypothetical protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504607005~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0102 Tresu_0103 Tresu_0103 Tresu_0103 112488 113084 - hypothetical protein KEGG: ddf:DEFDS_0878 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607006 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0103 Tresu_0104 Tresu_0104 Tresu_0104 113120 113800 - hypothetical protein KEGG: bvu:BVU_3427 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607007 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0104 Tresu_0105 Tresu_0105 Tresu_0105 113854 114864 - hypothetical protein KEGG: apr:Apre_0032 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607008 gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0105 Tresu_0106 Tresu_0106 Tresu_0106 115019 116149 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: Transposase IS116/IS110/IS902 family protein%3B~IMG reference gene:2504607009~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0106 Tresu_0107 Tresu_0107 Tresu_0107 116612 117544 - hypothetical protein KEGG: mpe:MYPE9810 hypothetical protein~SPTR: Putative uncharacterized protein MYPE9810%3B~IMG reference gene:2504607010 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0107 Tresu_0108 Tresu_0108 Tresu_0108 117528 119669 - endonuclease%2C Z1 domain-containing protein InterPro IPR018310~KEGG: mpe:MYPE9820 hypothetical protein~PFAM: Putative endonuclease%2C Z1 domain~SPTR: Putative uncharacterized protein MYPE9820%3B~IMG reference gene:2504607011~PFAM: Z1 domain gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0108 Tresu_0109 Tresu_0109 Tresu_0109 119672 121222 - hypothetical protein KEGG: mpe:MYPE9830 hypothetical protein~SPTR: Putative uncharacterized protein MYPE9830%3B~IMG reference gene:2504607012 gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0109 Tresu_0110 Tresu_0110 Tresu_0110 121222 122622 - DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: pmz:HMPREF0659_A7336 putative modification methylase HhaI~PFAM: C-5 cytosine methyltransferase~PRIAM: DNA (cytosine-5-)-methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607013~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0110 Tresu_0111 Tresu_0111 Tresu_0111 122785 123915 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504607014~PFAM: Transposase DDE domain gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0111 Tresu_0112 Tresu_0112 Tresu_0112 124110 124751 - hypothetical protein KEGG: acl:ACL_1058 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607015 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0112 Tresu_0113 Tresu_0113 Tresu_0113 124950 125201 - pseudogene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0113 Tresu_0114 Tresu_0114 Tresu_0114 125210 125338 - pseudogene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0114 Tresu_0115 Tresu_0115 Tresu_0115 125383 125709 - hypothetical protein KEGG: cdl:CDR20291_3072 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607018 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0115 Tresu_0116 Tresu_0116 Tresu_0116 125738 126148 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein COGs: COG1433 conserved hypothetical protein~InterPro IPR003731~KEGG: ere:EUBREC_1223 putative DNA-binding protein~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607019~PFAM: Dinitrogenase iron-molybdenum cofactor gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0116 Tresu_0117 Tresu_0117 Tresu_0117 126303 126959 - hypothetical protein COGs: COG2315 conserved hypothetical protein~InterPro IPR007351~KEGG: fnu:FN0897 putative cytoplasmic protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607020~PFAM: Protein of unknown function (DUF419) gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0117 Tresu_0118 Tresu_0118 Tresu_0118 127210 129123 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003439:IPR003593~KEGG: lic:LIC11434 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATPase component of ABC transporter%3B~IMG reference gene:2504607022~PFAM: ABC transporter gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0118 Tresu_0119 Tresu_0119 Tresu_0119 129157 129885 + NAD-dependent deacetylase COGs: COG0846 NAD-dependent protein deacetylase SIR2 family~HAMAP: NAD-dependent histone deacetylase%2C silent information regulator Sir2~InterPro IPR003000~KEGG: cpf:CPF_0249 NAD-dependent deacetylase~PFAM: NAD-dependent histone deacetylase%2C silent information regulator Sir2~SPTR: NAD-dependent protein deacetylases%2C SIR2 family%3B~IMG reference gene:2504607023~PFAM: Sir2 family gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0119 Tresu_0120 Tresu_0120 Tresu_0120 129887 130243 - hypothetical protein IMG reference gene:2504607024 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0120 Tresu_0121 Tresu_0121 Tresu_0121 130579 131133 + dihydrofolate reductase region COGs: COG0262 Dihydrofolate reductase~InterPro IPR001796~KEGG: lba:Lebu_0682 dihydrofolate reductase region~PFAM: Dihydrofolate reductase domain~SPTR: Dihydrofolate reductase%3B~IMG reference gene:2504607025~PFAM: Dihydrofolate reductase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0121 Tresu_0122 Tresu_0122 Tresu_0122 131069 131863 - PHP domain protein COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~InterPro IPR004013~KEGG: tde:TDE0796 histidinol phosphate phosphatase HisJ family protein~PFAM: PHP%2C C-terminal~SPTR: Histidinol phosphate phosphatase HisJ family protein%3B~IMG reference gene:2504607026~PFAM: PHP domain~TIGRFAM: histidinol phosphate phosphatase HisJ family gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0122 Tresu_0123 Tresu_0123 Tresu_0123 131973 134870 - pyruvate%2C phosphate dikinase COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterPro IPR002192:IPR008279:IPR000121:IPR010121~KEGG: ssm:Spirs_1716 pyruvate%2C phosphate dikinase~PFAM: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding%3B PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme~PRIAM: Pyruvate%2C phosphate dikinase~SPTR: Pyruvate%2C phosphate dikinase%3B~TIGRFAM: Pyruvate%2C phosphate dikinase~IMG reference gene:2504607027~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain~TIGRFAM: pyruvate%2C phosphate dikinase gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0123 Tresu_0124 Tresu_0124 Tresu_0124 134992 135312 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE2445 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504607028~PFAM: Helix-turn-helix gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0124 Tresu_0125 Tresu_0125 Tresu_0125 135448 135762 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607029 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0125 Tresu_0126 Tresu_0126 Tresu_0126 136051 136740 + hypothetical protein KEGG: bmu:Bmul_4769 phage-related membrane protein~SPTR: Putative phage-related membrane protein%3B~IMG reference gene:2504607030 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0126 Tresu_0127 Tresu_0127 Tresu_0127 136756 136980 + hypothetical protein IMG reference gene:2504607031 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0127 Tresu_0128 Tresu_0128 Tresu_0128 137198 137902 + hypothetical protein IMG reference gene:2504607032 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0128 Tresu_0129 Tresu_0129 Tresu_0129 138261 138689 + heat shock protein Hsp20 COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: tde:TDE1029 HSP20/alpha crystallin family protein~PFAM: Heat shock protein Hsp20~SPTR: Hsp20/alpha crystallin family protein%3B~IMG reference gene:2504607033~PFAM: Hsp20/alpha crystallin family gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0129 Tresu_0130 Tresu_0130 Tresu_0130 139071 140285 - hypothetical protein KEGG: ssm:Spirs_3810 surface antigen variable number repeat protein~SPTR: Surface antigen variable number repeat protein%3B~IMG reference gene:2504607034 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0130 Tresu_0131 Tresu_0131 Tresu_0131 140383 141087 - MTA/SAH nucleosidase COGs: COG0775 Nucleoside phosphorylase~InterPro IPR000845:IPR010049~KEGG: bpb:bpr_I0034 MTA/SAH nucleosidase~PFAM: Nucleoside phosphorylase domain~PRIAM: Adenosylhomocysteine nucleosidase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: MTA/SAH nucleosidase~IMG reference gene:2504607035~PFAM: Phosphorylase superfamily~TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0131 Tresu_0132 Tresu_0132 Tresu_0132 141448 143214 + asparagine synthase (glutamine-hydrolyzing) COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing)~InterPro IPR000583:IPR001962:IPR006426~KEGG: cat:CA2559_06815 asparagine synthetase B%2C glutamine-hydrolyzing protein~PFAM: Asparagine synthase%3B Glutamine amidotransferase%2C class-II~PRIAM: Asparagine synthase (glutamine-hydrolyzing)~SPTR: Asparagine synthetase B (Glutamine-hydrolyzing)%3B~TIGRFAM: Asparagine synthase%2C glutamine-hydrolyzing~IMG reference gene:2504607036~PFAM: Asparagine synthase~TIGRFAM: asparagine synthase (glutamine-hydrolyzing) gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0132 Tresu_0133 Tresu_0133 Tresu_0133 143224 143916 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: tde:TDE0847 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607037~PFAM: Uncharacterised protein family (UPF0153) gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0133 Tresu_0134 Tresu_0134 Tresu_0134 143925 144800 - Protein of unknown function DUF2179 COGs: COG1284 conserved hypothetical protein~InterPro IPR003740:IPR019264~KEGG: eel:EUBELI_00177 hypothetical protein~PFAM: Domain of unknown function DUF2179%3B Protein of unknown function DUF161~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607038~PFAM: Uncharacterized BCR%2C YitT family COG1284%3B Uncharacterized protein conserved in bacteria (DUF2179) gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0134 Tresu_0135 Tresu_0135 Tresu_0135 144924 146987 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2783 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607039~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0135 Tresu_0136 Tresu_0136 Tresu_0136 147255 148973 + DNA polymerase III%2C subunits gamma and tau COGs: COG2812 DNA polymerase III gamma/tau subunits~InterPro IPR003959:IPR012763:IPR003593~KEGG: tde:TDE2586 DNA polymerase III subunits gamma and tau~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA polymerase III%2C gamma and tau subunits%2C putative%3B~TIGRFAM: DNA polymerase III%2C subunit gamma/ tau~IMG reference gene:2504607041~PFAM: ATPase family associated with various cellular activities (AAA)%3B DNA polymerase III subunits gamma and tau domain III~TIGRFAM: DNA polymerase III%2C subunit gamma and tau gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0136 Tresu_0137 Tresu_0137 Tresu_0137 148975 150798 + ABC-type transporter%2C periplasmic subunit COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: pmx:PERMA_1125 transporter~PFAM: Bacterial extracellular solute-binding protein%2C family 5~SPTR: Transporter (Extracellular solute binding protein family 5)%3B~IMG reference gene:2504607042~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0137 Tresu_0138 Tresu_0138 Tresu_0138 150809 151903 + ABC-type transporter%2C integral membrane subunit COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: taf:THA_1532 oligopeptide transport system permease protein AppB~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Oligopeptide transport system permease protein AppB%3B~IMG reference gene:2504607043~PFAM: Binding-protein-dependent transport system inner membrane component gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0138 Tresu_0139 Tresu_0139 Tresu_0139 151920 152897 + Late embryogenesis abundant protein 2 InterPro IPR004864~KEGG: lbf:LBF_1777 putative lipoprotein~PFAM: Late embryogenesis abundant protein%2C group 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607044~PFAM: Late embryogenesis abundant protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0139 Tresu_0140 Tresu_0140 Tresu_0140 152904 154982 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR000515:IPR003439:IPR013563:IPR010066:IPR 003593~KEGG: sil:SPO2552 peptide/opine/nickel ABC transporter%2C permease/ATP-binding protein~PFAM: ABC transporter-like%3B Binding-protein-dependent transport systems inner membrane component%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal~PRIAM: Nickel-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Peptide/opine/nickel uptake family ABC transporter%2C permease/ATP-binding protein%3B~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~IMG reference gene:2504607045~PFAM: Binding-protein-dependent transport system inner membrane component%3B ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0140 Tresu_0141 Tresu_0141 Tresu_0141 154999 155973 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterPro IPR003439:IPR013563:IPR010066:IPR003593~KEGG: ipo:Ilyop_2512 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal~PRIAM: Nickel-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Oligopeptide/dipeptide ABC transporter%2C ATPase subunit%3B~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~IMG reference gene:2504607046~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0141 Tresu_0142 Tresu_0142 Tresu_0142 156022 156270 + hypothetical protein IMG reference gene:2504607047 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0142 Tresu_0143 Tresu_0143 Tresu_0143 156267 158444 + anaerobic ribonucleoside-triphosphate reductase COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase~InterPro IPR005144:IPR001150:IPR012833~KEGG: eel:EUBELI_01571 anaerobic ribonucleoside triphosphate reductase~PFAM: ATP-cone%3B Formate C-acetyltransferase glycine radical~PRIAM: Ribonucleoside-triphosphate reductase~SPTR: Anaerobic ribonucleoside-triphosphate reductase%3B~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic~IMG reference gene:2504607048~PFAM: Glycine radical%3B ATP cone domain~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0143 Tresu_0144 Tresu_0144 Tresu_0144 158445 158930 + anaerobic ribonucleoside-triphosphate reductase activating protein COGs: COG0602 Organic radical activating protein~InterPro IPR012837~KEGG: ere:EUBREC_1078 organic radical activating enzyme~SPTR: Anaerobic ribonucleoside-triphosphate reductase-activating protein%3B~TIGRFAM: Ribonucleoside-triphosphate reductase activating%2C anaerobic~IMG reference gene:2504607049~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0144 Tresu_0145 Tresu_0145 Tresu_0145 158937 159635 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SPTR: Two-component hybrid sensor and regulator%3B~IMG reference gene:2504607050~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0145 Tresu_0146 Tresu_0146 Tresu_0146 159994 160425 - PilT protein domain protein COGs: COG1487 nucleic acid-binding protein contains PIN domain~InterPro IPR002716~KEGG: reh:PHG187 putative plasmid maintenance protein~PFAM: PilT protein%2C N-terminal~SPTR: PilT protein domain protein%3B~IMG reference gene:2504607051~PFAM: PIN domain gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0146 Tresu_0147 Tresu_0147 Tresu_0147 160484 160756 - prevent-host-death family protein InterPro IPR006442~PFAM: Prevent-host-death protein~TIGRFAM: Prevent-host-death protein~IMG reference gene:2504607052~PFAM: Phd_YefM~TIGRFAM: prevent-host-death family protein gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0147 Tresu_0148 Tresu_0148 Tresu_0148 161030 161149 + RelB antitoxin InterPro IPR007337~PFAM: RelB antitoxin~IMG reference gene:2504607053~PFAM: RelB antitoxin~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0148 Tresu_0149 Tresu_0149 Tresu_0149 161197 161553 + hypothetical protein IMG reference gene:2504607054 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0149 Tresu_0150 Tresu_0150 Tresu_0150 161684 162100 + hypothetical protein IMG reference gene:2504607055 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0150 Tresu_0151 Tresu_0151 Tresu_0151 162405 163514 + ribonuclease III COGs: COG0571 dsRNA-specific ribonuclease~InterPro IPR000999:IPR001159~KEGG: smf:Smon_0778 ribonuclease III~PFAM: Ribonuclease III%3B Double-stranded RNA-binding~SMART: Ribonuclease III~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607056~PFAM: RNase3 domain gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0151 Tresu_0152 Tresu_0152 Tresu_0152 163514 164386 + hypothetical protein KEGG: fsu:Fisuc_1185 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504607057~PFAM: Competence protein CoiA-like family gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0152 Tresu_0153 Tresu_0153 Tresu_0153 164389 164994 + hypothetical protein KEGG: ddf:DEFDS_0878 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607058 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0153 Tresu_0154 Tresu_0154 Tresu_0154 165080 165460 + PEGA domain protein InterPro IPR013229~PFAM: PEGA~IMG reference gene:2504607059~PFAM: PEGA domain gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0154 Tresu_0155 Tresu_0155 Tresu_0155 165453 165827 + hypothetical protein IMG reference gene:2504607060 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0155 Tresu_0156 Tresu_0156 Tresu_0156 166071 166511 + hypothetical protein IMG reference gene:2504607061 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0156 Tresu_0157 Tresu_0157 Tresu_0157 166654 167097 - hypothetical protein KEGG: cno:NT01CX_0450 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607062 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0157 Tresu_0158 Tresu_0158 Tresu_0158 167075 167557 - hypothetical protein KEGG: ctc:CTC02408 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607063 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0158 Tresu_0159 Tresu_0159 Tresu_0159 167550 169295 - Long-chain-fatty-acid--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: tde:TDE0942 long-chain-fatty-acid--CoA ligase%2C putative~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase~SPTR: Long-chain-fatty-acid--CoA ligase%2C putative%3B~IMG reference gene:2504607064~PFAM: AMP-binding enzyme gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0159 Tresu_0160 Tresu_0160 Tresu_0160 169432 171066 - 60 kDa chaperonin COGs: COG0459 Chaperonin GroEL (HSP60 family)~HAMAP: Chaperonin Cpn60~InterPro IPR001844:IPR002423~KEGG: tpp:TPASS_0030 chaperonin GroEL~PFAM: Chaperonin Cpn60/TCP-1~SPTR: 60 kDa chaperonin%3B~TIGRFAM: Chaperonin Cpn60~IMG reference gene:2504607065~PFAM: TCP-1/cpn60 chaperonin family~TIGRFAM: chaperonin GroL gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0160 Tresu_0161 Tresu_0161 Tresu_0161 171434 173731 + formate acetyltransferase COGs: COG1882 Pyruvate-formate lyase~InterPro IPR004184:IPR001150:IPR005949~KEGG: bpb:bpr_I0112 pyruvate formate lyase PflB~PFAM: Pyruvate formate-lyase%2C PFL%3B Formate C-acetyltransferase glycine radical~PRIAM: Formate C-acetyltransferase~SPTR: Formate acetyltransferase%3B~TIGRFAM: Formate acetyltransferase~IMG reference gene:2504607066~PFAM: Glycine radical%3B Pyruvate formate lyase~TIGRFAM: formate acetyltransferase 1 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0161 Tresu_0162 Tresu_0162 Tresu_0162 173828 174994 - hypothetical protein IMG reference gene:2504607067 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0162 Tresu_0163 Tresu_0163 Tresu_0163 175015 175770 - exodeoxyribonuclease III Xth COGs: COG0708 Exonuclease III~InterPro IPR005135:IPR000097:IPR004808~KEGG: ere:EUBREC_0501 exodeoxyribonuclease~PFAM: Endonuclease/exonuclease/phosphatase~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SPTR: Exodeoxyribonuclease%3B~TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~IMG reference gene:2504607068~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III (xth) gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0163 Tresu_0164 Tresu_0164 Tresu_0164 175873 176153 - pseudogene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0164 Tresu_0165 Tresu_0165 Tresu_0165 176332 176679 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607070 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0165 Tresu_0166 Tresu_0166 Tresu_0166 176799 177545 + pyruvate formate-lyase activating enzyme COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR007197:IPR012838~KEGG: fsu:Fisuc_1047 pyruvate formate-lyase activating enzyme~PFAM: Radical SAM~PRIAM: [Formate-C-acetyltransferase]-activating enzyme~SPTR: Pyruvate formate-lyase activating enzyme%3B~TIGRFAM: Pyruvate formate-lyase activating~IMG reference gene:2504607071~PFAM: Radical SAM superfamily~TIGRFAM: pyruvate formate-lyase 1-activating enzyme gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0166 Tresu_0167 Tresu_0167 Tresu_0167 177666 178799 + hypothetical protein IMG reference gene:2504607072 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0167 Tresu_0168 Tresu_0168 Tresu_0168 178916 179722 + putative metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~KEGG: aar:Acear_1932 diguanylate cyclase and metal dependent phosphohydrolase~SPTR: Diguanylate cyclase and metal dependent phosphohydrolase%3B~IMG reference gene:2504607073 gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0168 Tresu_0169 Tresu_0169 Tresu_0169 179790 181058 + peptidase T COGs: COG2195 Di- and tripeptidase~InterPro IPR002933:IPR011650:IPR010161~KEGG: ssm:Spirs_3909 peptidase T~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation~PRIAM: Tripeptide aminopeptidase~SPTR: Peptidase T%3B~TIGRFAM: Peptidase M20B%2C tripeptide aminopeptidase~IMG reference gene:2504607074~PFAM: Peptidase family M20/M25/M40~TIGRFAM: peptidase T gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0169 Tresu_0170 Tresu_0170 Tresu_0170 181090 182373 + UDP-N-acetylglucosamine1-carboxyvinyltransferase COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase~HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~InterPro IPR005750:IPR001986~KEGG: tde:TDE0641 UDP-N-acetylglucosamine 1-carboxyvinyltransferase~PFAM: Enolpyruvate transferase domain~PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase%3B~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~IMG reference gene:2504607075~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0170 Tresu_0171 Tresu_0171 Tresu_0171 182446 184203 + threonyl-tRNA synthetase COGs: COG0441 Threonyl-tRNA synthetase~InterPro IPR012947:IPR002314:IPR004154:IPR002320~KEGG: tde:TDE1090 threonyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B Anticodon-binding~SMART: Threonyl/alanyl tRNA synthetase%2C SAD~SPTR: Threonyl-tRNA synthetase%3B~TIGRFAM: Threonyl-tRNA synthetase%2C class IIa~IMG reference gene:2504607076~PFAM: Anticodon binding domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: threonyl-tRNA synthetase gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0171 Tresu_0172 Tresu_0172 Tresu_0172 184200 184862 - hypothetical protein KEGG: tde:TDE2164 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607077 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0172 Tresu_0173 Tresu_0173 Tresu_0173 184892 185470 - NLP/P60 protein COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein)~InterPro IPR000064~KEGG: pag:PLES_15401 putative lipoprotein~PFAM: NLP/P60~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607078~PFAM: NlpC/P60 family gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0173 Tresu_0174 Tresu_0174 Tresu_0174 185864 187081 + reductase COGs: COG3007 Uncharacterized paraquat-inducible protein B~HAMAP: Uncharacterised protein family%2C TER reductase~InterPro IPR010758~KEGG: fsu:Fisuc_0738 trans-2-enoyl-CoA reductase~PFAM: Uncharacterised protein family%2C TER reductase~PRIAM: Trans-2-enoyl-CoA reductase (NAD(+))~SPTR: Putative reductase Fisuc_0738%3B~IMG reference gene:2504607079~PFAM: Trans-2-enoyl-CoA reductase catalytic region%3B NAD(P)H binding domain of trans-2-enoyl-CoA reductase%3B Enoyl reductase FAD binding domain gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0174 Tresu_0175 Tresu_0175 Tresu_0175 187163 188176 + Endo-1%2C4-beta-xylanase COGs: COG3693 Beta-1 4-xylanase~InterPro IPR001000~KEGG: sta:STHERM_c18930 endo-1%2C4-beta-xylanase B precursor~PFAM: Glycoside hydrolase%2C family 10~PRIAM: Endo-1%2C4-beta-xylanase~SMART: Glycoside hydrolase%2C family 10~SPTR: Endo-1%2C4-beta-xylanase B%3B~IMG reference gene:2504607080~PFAM: Glycosyl hydrolase family 10 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0175 Tresu_0176 Tresu_0176 Tresu_0176 188211 189356 - hypothetical protein IMG reference gene:2504607081 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0176 Tresu_0177 Tresu_0177 Tresu_0177 189753 190775 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: tra:Trad_2036 LacI family transcriptional regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504607082~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0177 Tresu_0178 Tresu_0178 Tresu_0178 190753 191412 - protein of unknown function DUF208 COGs: COG1636 conserved hypothetical protein~InterPro IPR003828~KEGG: ipo:Ilyop_0959 protein of unknown function DUF208~PFAM: Protein of unknown function DUF208~SPTR: DNA integration/recombination/invertion protein%3B~IMG reference gene:2504607083~PFAM: Uncharacterized BCR%2C COG1636 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0178 Tresu_0179 Tresu_0179 Tresu_0179 191415 192292 - pseudogene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0179 Tresu_0180 Tresu_0180 Tresu_0180 192485 193549 + hypothetical protein COGs: COG3641 membrane protein putative toxin regulator~KEGG: bpb:bpr_I2822 hypothetical protein~SPTR: Predicted membrane protein%2C putative toxin regulator%3B~IMG reference gene:2504607085 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0180 Tresu_0181 Tresu_0181 Tresu_0181 193597 196002 + hypothetical protein COGs: COG1306 conserved hypothetical protein~KEGG: tde:TDE2182 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504607086 gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0181 Tresu_0182 Tresu_0182 Tresu_0182 195999 197387 + tRNA modification GTPase mnmE COGs: COG0486 GTPase~HAMAP: tRNA modification GTPase TrmE~InterPro IPR004520:IPR018948:IPR002917:IPR005225~KEGG: tde:TDE2180 tRNA modification GTPase TrmE~PFAM: GTP-binding protein TrmE%2C N-terminal%3B GTP-binding protein%2C HSR1-related~SPTR: tRNA modification GTPase mnmE%3B~TIGRFAM: tRNA modification GTPase TrmE%3B Small GTP-binding protein~IMG reference gene:2504607087~PFAM: GTPase of unknown function%3B GTP-binding protein TrmE N-terminus~TIGRFAM: small GTP-binding protein domain%3B tRNA modification GTPase TrmE gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0182 Tresu_0183 Tresu_0183 Tresu_0183 197422 198219 + hypothetical protein KEGG: tpp:TPASS_0678 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607088 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0183 Tresu_0184 Tresu_0184 Tresu_0184 198310 198726 + hypothetical protein KEGG: tde:TDE1018 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607089 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0184 Tresu_0185 Tresu_0185 Tresu_0185 198773 199666 - hypothetical protein KEGG: ssm:Spirs_3969 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607090 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0185 Tresu_0186 Tresu_0186 Tresu_0186 199726 200607 - PHP domain protein COGs: COG0613 metal-dependent phosphoesterase (PHP family)~InterPro IPR004013:IPR003141~KEGG: tde:TDE2618 phosphotransferase domain-containing protein~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: PHP domain protein%3B~IMG reference gene:2504607091~PFAM: PHP domain gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0186 Tresu_0187 Tresu_0187 Tresu_0187 200726 202006 + putative transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: tde:TDE2616 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain~SPTR: Cyclic nucleotide-binding protein%3B~IMG reference gene:2504607092~PFAM: Cyclic nucleotide-binding domain gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0187 Tresu_0188 Tresu_0188 Tresu_0188 202113 202673 - flavin reductase domain protein FMN-binding protein COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family~InterPro IPR002563~KEGG: pdi:BDI_2172 putative flavoredoxin~PFAM: Flavin reductase-like%2C FMN-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607093~PFAM: Flavin reductase like domain gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0188 Tresu_0189 Tresu_0189 Tresu_0189 203015 203512 + Shikimate kinase COGs: COG0703 Shikimate kinase~HAMAP: Shikimate kinase~InterPro IPR000623~KEGG: bpb:bpr_I2047 shikimate kinase AroK~PFAM: Shikimate kinase~PRIAM: Shikimate kinase~SPTR: Shikimate kinase AroK%3B~IMG reference gene:2504607094~PFAM: Shikimate kinase gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0189 Tresu_0190 Tresu_0190 Tresu_0190 203516 205756 - Patatin COGs: COG1752 esterase of the alpha-beta hydrolase superfamily~InterPro IPR002641~KEGG: pen:PSEEN3920 hypothetical protein~PFAM: Patatin/Phospholipase A2-related~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607095~PFAM: Patatin-like phospholipase gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0190 Tresu_0191 Tresu_0191 Tresu_0191 206147 207442 + hypothetical protein IMG reference gene:2504607096 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0191 Tresu_0192 Tresu_0192 Tresu_0192 207817 210171 + Tex-like protein COGs: COG2183 Transcriptional accessory protein~InterPro IPR018974:IPR003029:IPR006641:IPR022967~KEGG: tde:TDE1012 tex protein%2C putative~PFAM: Tex-like protein%2C N-terminal%3B Ribosomal protein S1%2C RNA-binding domain~SMART: RNA-binding domain%2C S1%3B Resolvase%2C RNase H-like fold~SPTR: Tex protein%2C putative%3B~IMG reference gene:2504607097~PFAM: Tex-like protein N-terminal domain%3B S1 RNA binding domain~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0192 Tresu_0193 Tresu_0193 Tresu_0193 210726 212468 + Site-specific DNA-methyltransferase (adenine-specific) COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: fma:FMG_1532 type I restriction-modification system DNA methylase~PFAM: DNA methylase%2C adenine-specific~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: Type I restriction-modification system DNA methylase%3B~IMG reference gene:2504607099~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0193 Tresu_0194 Tresu_0194 Tresu_0194 212465 213403 + KilA-N%2C DNA-binding domain protein InterPro IPR018873~KEGG: bpb:bpr_I2827 hypothetical protein~PFAM: KilA-N%2C DNA-binding domain~SPTR: ORF6N domain%3B~IMG reference gene:2504607100~PFAM: ORF6N domain gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0194 Tresu_0195 Tresu_0195 Tresu_0195 213453 213893 + protein of unknown function DUF1016 InterPro IPR009362~KEGG: mbu:Mbur_1219 hypothetical protein~PFAM: Protein of unknown function DUF1016~SPTR: Phage uncharacterized family protein%3B~IMG reference gene:2504607101~PFAM: Protein of unknown function (DUF1016) gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0195 Tresu_0196 Tresu_0196 Tresu_0196 213988 215142 + restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: plm:Plim_1220 restriction modification system DNA specificity domain protein~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Restriction modification system DNA specificity domain protein%3B~IMG reference gene:2504607102~PFAM: Type I restriction modification DNA specificity domain gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0196 Tresu_0197 Tresu_0197 Tresu_0197 215139 216476 + hypothetical protein KEGG: tcx:Tcr_1102 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607103 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0197 Tresu_0198 Tresu_0198 Tresu_0198 219396 220103 + pseudogene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0198 Tresu_0199 Tresu_0199 Tresu_0199 218170 219368 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504607105~PFAM: Transposase%3B Integrase core domain gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0199 Tresu_0200 Tresu_0200 Tresu_0200 220283 221338 + filamentation induced by cAMP protein Fic COGs: COG3177 conserved hypothetical protein~InterPro IPR003812~KEGG: abu:Abu_1071 hypothetical protein~PFAM: Filamentation induced by cAMP/death on curing-related~SPTR: Filamentation induced by cAMP protein Fic%3B~IMG reference gene:2504607106~PFAM: Fic/DOC family gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0200 Tresu_0201 Tresu_0201 Tresu_0201 221351 224581 + type I site-specific deoxyribonuclease%2C HsdR family COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR007409:IPR006935:IPR004473:IPR014001~KEGG: fma:FMG_1534 type I restriction enzyme~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DEAD-like helicase%2C N-terminal~SPTR: Type I restriction enzyme%3B~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~IMG reference gene:2504607107~PFAM: Domain of unknown function (DUF3387)%3B Type I restriction enzyme R protein N terminus (HSDR_N)%3B Type III restriction enzyme%2C res subunit~TIGRFAM: type I site-specific deoxyribonuclease%2C HsdR family gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0201 Tresu_0202 Tresu_0202 Tresu_0202 224690 225460 - zinc/iron permease COGs: COG0428 divalent heavy-metal cations transporter~InterPro IPR003689~KEGG: cpy:Cphy_0713 zinc/iron permease~PFAM: Zinc/iron permease~SPTR: Zinc:iron permease%3B~IMG reference gene:2504607108~PFAM: ZIP Zinc transporter gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0202 Tresu_0203 Tresu_0203 Tresu_0203 225580 226887 + outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: ssm:Spirs_0898 outer membrane efflux protein~PFAM: Outer membrane efflux protein~SPTR: Outer membrane efflux protein%3B~IMG reference gene:2504607109~PFAM: Outer membrane efflux protein gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0203 Tresu_0204 Tresu_0204 Tresu_0204 226889 227827 + efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: ssm:Spirs_0899 efflux transporter%2C RND family%2C MFP subunit~PFAM: Secretion protein HlyD~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504607110~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0204 Tresu_0205 Tresu_0205 Tresu_0205 227831 230935 + acriflavin resistance protein COGs: COG0841 Cation/multidrug efflux pump~InterPro IPR001036~KEGG: ssm:Spirs_0038 acriflavin resistance protein~PFAM: Acriflavin resistance protein~SPTR: Acriflavin resistance protein%3B~IMG reference gene:2504607111~PFAM: AcrB/AcrD/AcrF family~TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0205 Tresu_0206 Tresu_0206 Tresu_0206 230936 231226 + hypothetical protein KEGG: ssm:Spirs_0039 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607112 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0206 Tresu_0207 Tresu_0207 Tresu_0207 231357 232961 + CTP synthase COGs: COG0504 CTP synthase (UTP-ammonia lyase)~HAMAP: CTP synthase~InterPro IPR004468:IPR017456:IPR000991~KEGG: vpr:Vpar_1584 CTP synthase~PFAM: CTP synthase%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~PRIAM: CTP synthase~SPTR: CTP synthase%3B~TIGRFAM: CTP synthase~IMG reference gene:2504607113~PFAM: Glutamine amidotransferase class-I%3B CTP synthase N-terminus~TIGRFAM: CTP synthase gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0207 Tresu_0208 Tresu_0208 Tresu_0208 233148 233729 - response regulator receiver and ANTAR domain protein COGs: COG3707 Response regulator with putative antiterminator output domain~InterPro IPR001789:IPR005561~KEGG: cth:Cthe_0203 response regulator receiver/ANTAR domain-containing protein~PFAM: ANTAR%3B Signal transduction response regulator%2C receiver domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607114~PFAM: Response regulator receiver domain%3B ANTAR domain gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0208 Tresu_0209 Tresu_0209 Tresu_0209 233741 234949 - glutamine synthetase catalytic region COGs: COG0174 Glutamine synthetase~InterPro IPR008147:IPR008146~KEGG: cth:Cthe_0202 L-glutamine synthetase~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607115~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp domain~TIGRFAM: glutamine synthetase%2C type I gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0209 Tresu_0210 Tresu_0210 Tresu_0210 235319 237412 + glutamine synthetase catalytic region COGs: COG3968 Uncharacterized protein related to glutamine synthetase~InterPro IPR008146~KEGG: cth:Cthe_0196 glutamine synthetase%2C catalytic region~PFAM: Glutamine synthetase%2C catalytic domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607116~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase type III N terminal gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0210 Tresu_0211 Tresu_0211 Tresu_0211 237525 238004 + SCP-like extracellular COGs: COG2340 Uncharacterized protein with SCP/PR1 domains~InterPro IPR014044~KEGG: ava:Ava_1912 allergen V5/TPX-1 related~PFAM: CAP domain~SPTR: Allergen V5/Tpx-1 related protein%3B~IMG reference gene:2504607117~PFAM: Cysteine-rich secretory protein family gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0211 Tresu_0212 Tresu_0212 Tresu_0212 238027 239019 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: tde:TDE2241 glycosyl transferase%2C group 2 family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C group 2 family%3B~IMG reference gene:2504607118~PFAM: Glycosyl transferase family 2 gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0212 Tresu_0213 Tresu_0213 Tresu_0213 239257 241008 + ammonium transporter COGs: COG0004 Ammonia permease~InterPro IPR001905:IPR002187~KEGG: ere:EUBREC_0702 adenylate/guanylate cyclase~PFAM: Ammonium transporter%3B Nitrogen regulatory protein PII~SMART: Nitrogen regulatory protein PII~SPTR: Ammonium transporter%3B~TIGRFAM: Ammonium transporter~IMG reference gene:2504607119~PFAM: Ammonium Transporter Family%3B Nitrogen regulatory protein P-II~TIGRFAM: ammonium transporter gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0213 Tresu_0214 Tresu_0214 Tresu_0214 241413 242714 - Polymorphic membrane protein Chlamydia InterPro IPR003368:IPR006626~KEGG: mru:mru_0962 adhesin-like protein~PFAM: Polymorphic membrane protein%2C Chlamydia~SPTR: Probable extracellular nuclease%3B~IMG reference gene:2504607120 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0214 Tresu_0215 Tresu_0215 Tresu_0215 242758 243006 - hypothetical protein IMG reference gene:2504607121 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0215 Tresu_0216 Tresu_0216 Tresu_0216 243332 244549 - ATPase COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: dhd:Dhaf_4874 ATPase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607122 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0216 Tresu_0217 Tresu_0217 Tresu_0217 244878 246464 - hypothetical protein IMG reference gene:2504607123 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0217 Tresu_0218 Tresu_0218 Tresu_0218 246750 247904 - HipA N-terminal domain protein COGs: COG3550 conserved hypothetical protein~InterPro IPR012894:IPR012893:IPR017508~KEGG: sus:Acid_2061 HipA domain-containing protein~PFAM: HipA-like%2C C-terminal%3B HipA-like%2C N-terminal~SPTR: HipA domain-containing protein%3B~TIGRFAM: HipA%2C N-terminal~IMG reference gene:2504607124~PFAM: HipA-like N-terminal domain%3B HipA-like C-terminal domain~TIGRFAM: HipA N-terminal domain gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0218 Tresu_0219 Tresu_0219 Tresu_0219 247901 248122 - transcriptional regulator%2C XRE family KEGG: ele:Elen_1196 transcriptional regulator%2C XRE family~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504607125~PFAM: Helix-turn-helix~TIGRFAM: transcriptional regulator%2C y4mF family gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0219 Tresu_0220 Tresu_0220 Tresu_0220 248268 249248 + hypothetical protein KEGG: cpy:Cphy_1581 ABC-type sugar transport system periplasmic component-like protein~SPTR: ABC-type sugar transport system periplasmic component-like protein%3B~IMG reference gene:2504607126 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0220 Tresu_0221 Tresu_0221 Tresu_0221 249245 250735 + histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003660:IPR010559:IPR003594~KEGG: csh:Closa_3815 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATPase-like%2C ATP-binding domain~SMART: HAMP linker domain~SPTR: Putative regulator of cell autolysis%3B~IMG reference gene:2504607127~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0221 Tresu_0222 Tresu_0222 Tresu_0222 250728 252296 + two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR000005:IPR018060~KEGG: bpb:bpr_I1171 two component system response regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain%3B Signal transduction response regulator%2C receiver domain~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2504607128~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0222 Tresu_0223 Tresu_0223 Tresu_0223 252293 253330 + periplasmic binding protein/LacI transcriptional regulator COGs: COG4213 ABC-type xylose transport system periplasmic component~KEGG: cpy:Cphy_1584 periplasmic binding protein/LacI transcriptional regulator~SPTR: Periplasmic binding protein/LacI transcriptional regulator%3B~IMG reference gene:2504607129~PFAM: family gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0223 Tresu_0224 Tresu_0224 Tresu_0224 253375 254364 + ATPase associated with various cellular activities AAA_3 COGs: COG0714 MoxR-like ATPase~InterPro IPR011703~KEGG: tde:TDE0319 hypothetical protein~PFAM: ATPase%2C AAA-3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607130~PFAM: ATPase family associated with various cellular activities (AAA) gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0224 Tresu_0225 Tresu_0225 Tresu_0225 254361 255239 + protein of unknown function DUF58 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain)~InterPro IPR002881~KEGG: tde:TDE1248 hypothetical protein~PFAM: Domain of unknown function DUF58~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607131~PFAM: Protein of unknown function DUF58 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0225 Tresu_0226 Tresu_0226 Tresu_0226 255249 256295 + hypothetical protein KEGG: tde:TDE1249 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607132 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0226 Tresu_0227 Tresu_0227 Tresu_0227 256431 257432 + von Willebrand factor type A InterPro IPR002035~KEGG: tde:TDE1250 BatA protein%2C putative~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A~SPTR: BatA protein%2C putative%3B~IMG reference gene:2504607133~PFAM: von Willebrand factor type A domain gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0227 Tresu_0228 Tresu_0228 Tresu_0228 257429 259045 + von Willebrand factor type A InterPro IPR002035:IPR019734~KEGG: tde:TDE1252 putative lipoprotein~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A%3B Tetratricopeptide repeat~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504607134 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0228 Tresu_0229 Tresu_0229 Tresu_0229 258997 260379 + SH3 type 3 domain protein InterPro IPR013247~KEGG: tde:TDE1253 hypothetical protein~PFAM: SH3%2C type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607135~PFAM: Bacterial SH3 domain gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0229 Tresu_0230 Tresu_0230 Tresu_0230 260394 260951 + Smr protein/MutS2 COGs: COG2840 conserved hypothetical protein~InterPro IPR002625~KEGG: tde:TDE1254 Smr domain-containing protein~PFAM: Smr protein/MutS2 C-terminal~SMART: Smr protein/MutS2 C-terminal~SPTR: Smr domain protein%3B~IMG reference gene:2504607136~PFAM: Smr domain gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0230 Tresu_0231 Tresu_0231 Tresu_0231 261014 261520 + heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623~KEGG: tte:TTE0956 chaperone protein DnaJ~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: Heat shock protein DnaJ%3B~IMG reference gene:2504607137~PFAM: DnaJ domain gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0231 Tresu_0232 Tresu_0232 Tresu_0232 261543 262001 + Ribonuclease H COGs: COG0328 Ribonuclease HI~HAMAP: Ribonuclease H~InterPro IPR022892:IPR002156~KEGG: hdn:Hden_2893 ribonuclease H~PFAM: Ribonuclease H domain~PRIAM: Ribonuclease H~SPTR: Ribonuclease H%3B~IMG reference gene:2504607138~PFAM: RNase H gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0232 Tresu_0233 Tresu_0233 Tresu_0233 262044 262541 - flagellar basal body-associated protein FliL InterPro IPR005503~KEGG: tde:TDE2322 flagellar protein FliL-related protein~PFAM: Flagellar basal body-associated protein FliL~SPTR: Flagellar protein FliL-related protein%3B~IMG reference gene:2504607139~PFAM: Flagellar basal body-associated protein FliL gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0233 Tresu_0234 Tresu_0234 Tresu_0234 262538 263857 - GTP-binding proten HflX COGs: COG2262 GTPase~InterPro IPR002917:IPR016496~KEGG: ssm:Spirs_3087 GTP-binding protein HflX~PFAM: GTP-binding protein%2C HSR1-related~SPTR: GTP-binding proten HflX%3B~TIGRFAM: GTP-binding protein%2C HflX~IMG reference gene:2504607140~PFAM: GTPase of unknown function~TIGRFAM: GTP-binding protein HflX%3B small GTP-binding protein domain gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0234 Tresu_0235 Tresu_0235 Tresu_0235 264057 264266 + hypothetical protein IMG reference gene:2504607141 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0235 Tresu_0236 Tresu_0236 Tresu_0236 264269 264661 - 4-hydroxybenzoyl-CoA thioesterase COGs: COG0824 thioesterase~InterPro IPR006683:IPR006684~KEGG: tde:TDE2225 thioesterase family protein~PFAM: Thioesterase superfamily~SPTR: Thioesterase family protein%3B~TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase~IMG reference gene:2504607142~PFAM: Thioesterase superfamily~TIGRFAM: acyl-CoA thioester hydrolase%2C YbgC/YbaW family gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0236 Tresu_0237 Tresu_0237 Tresu_0237 264678 266210 - hypothetical protein KEGG: tde:TDE0063 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607143 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0237 Tresu_0238 Tresu_0238 Tresu_0238 266296 268515 + peptidase U32 COGs: COG0826 Collagenase and related protease~InterPro IPR001539~KEGG: tde:TDE0071 U32 family peptidase~PFAM: Peptidase U32~SPTR: Peptidase%2C U32 family%3B~IMG reference gene:2504607144~PFAM: Peptidase family U32 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0238 Tresu_0239 Tresu_0239 Tresu_0239 268632 269648 + Conserved hypothetical protein CHP02241%2C phage tail region protein InterPro IPR011747~KEGG: noc:Noc_1873 phage tail region protein~SPTR: Conserved hypothetical phage tail region protein%3B~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~IMG reference gene:2504607145~PFAM: T4-like virus tail tube protein gp19~TIGRFAM: conserved hypothetical phage tail region protein gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0239 Tresu_0240 Tresu_0240 Tresu_0240 269649 270371 + hypothetical protein KEGG: cla:Cla_0887 hypothetical protein~SPTR: KWG repeat domain protein%3B~IMG reference gene:2504607146 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0240 Tresu_0241 Tresu_0241 Tresu_0241 270639 270983 + hypothetical protein IMG reference gene:2504607147 gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0241 Tresu_0242 Tresu_0242 Tresu_0242 271012 271104 + hypothetical protein IMG reference gene:2504607148 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0242 Tresu_0243 Tresu_0243 Tresu_0243 271094 271354 + pseudogene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0243 Tresu_0244 Tresu_0244 Tresu_0244 271361 271988 + pseudogene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0244 Tresu_0245 Tresu_0245 Tresu_0245 272125 272667 + hypothetical protein IMG reference gene:2504607151 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0245 Tresu_0246 Tresu_0246 Tresu_0246 272636 272995 + hypothetical protein KEGG: tmt:Tmath_0464 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607152 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0246 Tresu_0247 Tresu_0247 Tresu_0247 273247 273657 + hypothetical protein IMG reference gene:2504607153 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0247 Tresu_0248 Tresu_0248 Tresu_0248 273754 274668 + Conserved hypothetical protein CHP02241%2C phage tail region protein COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047:IPR011747~KEGG: gsu:GSU0979 hypothetical protein~PFAM: Peptidase M23~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~IMG reference gene:2504607154~PFAM: T4-like virus tail tube protein gp19%3B Peptidase family M23~TIGRFAM: conserved hypothetical phage tail region protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0248 Tresu_0249 Tresu_0249 Tresu_0249 274668 275156 + hypothetical protein IMG reference gene:2504607155 gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0249 Tresu_0250 Tresu_0250 Tresu_0250 275340 275807 + hypothetical protein IMG reference gene:2504607156 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0250 Tresu_0251 Tresu_0251 Tresu_0251 275807 276571 + hypothetical protein IMG reference gene:2504607157 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0251 Tresu_0252 Tresu_0252 Tresu_0252 276641 277597 + Conserved hypothetical protein CHP02241%2C phage tail region protein COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein)~InterPro IPR000064:IPR011747~KEGG: noc:Noc_1873 phage tail region protein~PFAM: NLP/P60~SPTR: Conserved hypothetical phage tail region protein%3B~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~IMG reference gene:2504607158~PFAM: NlpC/P60 family%3B T4-like virus tail tube protein gp19~TIGRFAM: conserved hypothetical phage tail region protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0252 Tresu_0253 Tresu_0253 Tresu_0253 277607 278083 + hypothetical protein IMG reference gene:2504607159 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0253 Tresu_0254 Tresu_0254 Tresu_0254 278178 278354 + hypothetical protein IMG reference gene:2504607160 gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0254 Tresu_0255 Tresu_0255 Tresu_0255 278540 278923 + hypothetical protein IMG reference gene:2504607161 gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0255 Tresu_0256 Tresu_0256 Tresu_0256 279018 281291 - 5-methyltetrahydropteroyltriglutamate--homocyste inemethyltransferase COGs: COG0620 Methionine synthase II (cobalamin-independent)~HAMAP: Cobalamin-independent methionine synthase~InterPro IPR006276:IPR013215:IPR002629~KEGG: fsu:Fisuc_1351 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~PFAM: Methionine synthase%2C vitamin-B12 independent%3B Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal~PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase~SPTR:5-methyltetrahydropteroyltriglutamate--homocys teinemethyltransferase%3B~TIGRFAM: Cobalamin-independent methionine synthase~IMG reference gene:2504607162~PFAM: Cobalamin-independent synthase%2C Catalytic domain%3B Cobalamin-independent synthase%2C N-terminal domain~TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0256 Tresu_0257 Tresu_0257 Tresu_0257 281385 281673 + pseudogene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0257 Tresu_0258 Tresu_0258 Tresu_0258 281815 282984 + Ornithine decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR022644:IPR022643~KEGG: tde:TDE1109 pyridoxal-dependent family decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2%2C N-terminal%3B Orn/DAP/Arg decarboxylase 2%2C C-terminal~PRIAM: Ornithine decarboxylase~SPTR: Decarboxylase%2C pyridoxal-dependent family%3B~IMG reference gene:2504607164~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0258 Tresu_0259 Tresu_0259 Tresu_0259 283182 283721 + hypothetical protein KEGG: tde:TDE0022 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607165 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0259 Tresu_0260 Tresu_0260 Tresu_0260 283731 284990 + Gamma-glutamyl phosphate reductase COGs: COG0014 Gamma-glutamyl phosphate reductase~HAMAP: Glutamate-5-semialdehyde dehydrogenase~InterPro IPR012134:IPR000965~KEGG: aoe:Clos_0127 gamma-glutamyl phosphate reductase~PRIAM: Glutamate-5-semialdehyde dehydrogenase~SPTR: Gamma-glutamyl phosphate reductase%3B~TIGRFAM: Gamma-glutamyl phosphate reductase GPR~IMG reference gene:2504607166~PFAM: Aldehyde dehydrogenase family~TIGRFAM: gamma-glutamyl phosphate reductase gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0260 Tresu_0261 Tresu_0261 Tresu_0261 285236 287533 - phenylalanyl-tRNA synthetase%2C beta subunit COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit~InterPro IPR005147:IPR002547:IPR004531:IPR005146~KEGG: tde:TDE1927 phenylalanyl-tRNA synthetase subunit beta~PFAM: tRNA-binding domain%3B tRNA synthetase%2C B5~SMART: tRNA synthetase%2C B5%3B B3/B4 tRNA-binding domain~SPTR: Phenylalanyl-tRNA synthetase beta chain%3B~TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C archae/euk cytosolic~IMG reference gene:2504607167~PFAM: tRNA synthetase B5 domain%3B Putative tRNA binding domain~TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain%3B phenylalanyl-tRNA synthetase%2C beta subunit gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0261 Tresu_0262 Tresu_0262 Tresu_0262 288479 289390 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607168 gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0262 Tresu_0263 Tresu_0263 Tresu_0263 289407 289736 - hypothetical protein IMG reference gene:2504607169 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0263 Tresu_0264 Tresu_0264 Tresu_0264 290130 290567 + pseudogene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0264 Tresu_0265 Tresu_0265 Tresu_0265 290680 291069 - hypothetical protein IMG reference gene:2504607171 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0265 Tresu_0266 Tresu_0266 Tresu_0266 291340 293079 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607172~PFAM: Phage late control gene D protein (GPD) gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0266 Tresu_0267 Tresu_0267 Tresu_0267 293100 293621 + hypothetical protein IMG reference gene:2504607173 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0267 Tresu_0268 Tresu_0268 Tresu_0268 293618 294172 + hypothetical protein IMG reference gene:2504607174 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0268 Tresu_0269 Tresu_0269 Tresu_0269 294208 294354 - hypothetical protein IMG reference gene:2504607175 gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0269 Tresu_0270 Tresu_0270 Tresu_0270 294650 296227 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607176~PFAM: Phage late control gene D protein (GPD) gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0270 Tresu_0271 Tresu_0271 Tresu_0271 296215 296406 + hypothetical protein IMG reference gene:2504607177 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0271 Tresu_0272 Tresu_0272 Tresu_0272 296396 296950 + hypothetical protein IMG reference gene:2504607178 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0272 Tresu_0273 Tresu_0273 Tresu_0273 296940 297344 + hypothetical protein IMG reference gene:2504607179 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0273 Tresu_0274 Tresu_0274 Tresu_0274 297529 299370 + hypothetical protein KEGG: gvi:gll0425 hypothetical protein~SPTR: Gll0425 protein%3B~IMG reference gene:2504607180~PFAM: Phage late control gene D protein (GPD) gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0274 Tresu_0275 Tresu_0275 Tresu_0275 299386 300531 + hypothetical protein KEGG: cpi:Cpin_5895 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607181~PFAM: Protein of unknown function (DUF3289) gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0275 Tresu_0276 Tresu_0276 Tresu_0276 300524 301033 + hypothetical protein IMG reference gene:2504607182 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0276 Tresu_0277 Tresu_0277 Tresu_0277 301201 301827 + hypothetical protein IMG reference gene:2504607183 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0277 Tresu_0278 Tresu_0278 Tresu_0278 301824 303041 + regulator of chromosome condensation RCC1 COGs: COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing protein~InterPro IPR000408~KEGG: ckn:Calkro_1724 regulator of chromosome condensation RCC1~PFAM: Regulator of chromosome condensation%2C RCC1~SPTR: Alpha-tubulin suppressor%3B~IMG reference gene:2504607184~PFAM: Regulator of chromosome condensation (RCC1) repeat gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0278 Tresu_0279 Tresu_0279 Tresu_0279 303041 304006 + hypothetical protein IMG reference gene:2504607185~PFAM: Phage late control gene D protein (GPD) gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0279 Tresu_0280 Tresu_0280 Tresu_0280 304010 304372 + hypothetical protein IMG reference gene:2504607186 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0280 Tresu_0281 Tresu_0281 Tresu_0281 304747 305658 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607187 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0281 Tresu_0282 Tresu_0282 Tresu_0282 305675 306004 - hypothetical protein IMG reference gene:2504607188 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0282 Tresu_0283 Tresu_0283 Tresu_0283 306269 306910 + hypothetical protein KEGG: ypy:YPK_2589 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607189 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0283 Tresu_0284 Tresu_0284 Tresu_0284 306907 307419 + hypothetical protein IMG reference gene:2504607190 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0284 Tresu_0285 Tresu_0285 Tresu_0285 307445 307948 + hypothetical protein IMG reference gene:2504607191 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0285 Tresu_0286 Tresu_0286 Tresu_0286 307956 308117 - hypothetical protein IMG reference gene:2504607192 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0286 Tresu_0287 Tresu_0287 Tresu_0287 308485 308943 - single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR000424:IPR011344~KEGG: caa:Caka_1586 single-strand binding protein~PFAM: Primosome PriB/single-strand DNA-binding~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: Single-strand DNA-binding~IMG reference gene:2504607193~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0287 Tresu_0288 Tresu_0288 Tresu_0288 309209 311080 + hypothetical protein KEGG: tde:TDE0585 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607194 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0288 Tresu_0289 Tresu_0289 Tresu_0289 311197 312252 + Mg2 transporter protein CorA family protein COGs: COG0598 Mg2+ and Co2+ transporter~InterPro IPR002523~KEGG: kol:Kole_1762 Mg2 transporter protein CorA family protein~PFAM: Mg2+ transporter protein%2C CorA-like~SPTR: Mg2 transporter protein CorA family protein%3B~IMG reference gene:2504607195~PFAM: CorA-like Mg2+ transporter protein gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0289 Tresu_0290 Tresu_0290 Tresu_0290 312249 313223 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: tde:TDE2101 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607196~PFAM: Formylglycine-generating sulfatase enzyme gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0290 Tresu_0291 Tresu_0291 Tresu_0291 313220 313675 + hypothetical protein IMG reference gene:2504607197 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0291 Tresu_0292 Tresu_0292 Tresu_0292 313742 315163 + Adenylosuccinate lyase COGs: COG0015 Adenylosuccinate lyase~InterPro IPR022761~KEGG: tde:TDE1499 adenylosuccinate lyase%2C putative~PFAM: Lyase 1%2C N-terminal~PRIAM: Adenylosuccinate lyase~SPTR: Adenylosuccinate lyase%2C putative%3B~IMG reference gene:2504607198~PFAM: Lyase gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0292 Tresu_0293 Tresu_0293 Tresu_0293 315173 316300 + oxidoreductase domain protein COGs: COG0673 dehydrogenase and related protein~InterPro IPR000683~KEGG: ssm:Spirs_2127 oxidoreductase domain protein~PFAM: Oxidoreductase%2C N-terminal~SPTR: Oxidoreductase domain protein%3B~IMG reference gene:2504607199~PFAM: Oxidoreductase family%2C NAD-binding Rossmann fold gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0293 Tresu_0294 Tresu_0294 Tresu_0294 316642 317307 + outer membrane lipoprotein carrier protein LolA COGs: COG2834 Outer membrane lipoprotein-sorting protein~InterPro IPR004564~KEGG: tde:TDE2607 hypothetical protein~PFAM: Outer membrane lipoprotein carrier protein LolA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607200~PFAM: Outer membrane lipoprotein carrier protein LolA gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0294 Tresu_0295 Tresu_0295 Tresu_0295 317311 318426 + hypothetical protein COGs: COG1426 conserved hypothetical protein~KEGG: tde:TDE2608 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607201 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0295 Tresu_0296 Tresu_0296 Tresu_0296 318419 319873 + RNA modification enzyme%2C MiaB family COGs: COG0621 2-methylthioadenine synthetase~InterPro IPR013848:IPR007197:IPR005839:IPR006638~KEGG: tde:TDE2609 putative tRNA modifying protein~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~TIGRFAM: Methylthiotransferase~IMG reference gene:2504607202~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: ribosomal protein S12 methylthiotransferase RimO%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0296 Tresu_0297 Tresu_0297 Tresu_0297 319870 322080 + UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR000212~KEGG: tde:TDE2335 ATP-dependent DNA helicase UvrD~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase%2C UvrD/Rep family%3B~IMG reference gene:2504607203~PFAM: UvrD/REP helicase%3B Viral (Superfamily 1) RNA helicase gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0297 Tresu_0298 Tresu_0298 Tresu_0298 322077 323105 + ApbE family lipoprotein COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis~InterPro IPR003374~KEGG: ttm:Tthe_0701 ApbE family lipoprotein~PFAM: Thiamine synthesis ApbE/UPF0280~SPTR: ApbE family lipoprotein%3B~IMG reference gene:2504607204~PFAM: ApbE family gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0298 Tresu_0299 Tresu_0299 Tresu_0299 323167 324504 + sodium:neurotransmitter symporter COGs: COG0733 Na+-dependent transporter of the SNF family~InterPro IPR000175~KEGG: ere:EUBREC_1419 Na+-dependent transporters of the SNF family~PFAM: Sodium:neurotransmitter symporter~SPTR: Transporter%3B~IMG reference gene:2504607205~PFAM: Sodium:neurotransmitter symporter family gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0299 Tresu_0300 Tresu_0300 Tresu_0300 324589 325356 - hypothetical protein KEGG: bfs:BF4136 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607206~PFAM: Bacterial DNA-binding protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0300 Tresu_0301 Tresu_0301 Tresu_0301 325603 326193 - protein of unknown function DUF955 InterPro IPR010359~KEGG: clo:HMPREF0868_0163 toxin-antitoxin system%2C toxin component family protein~PFAM: Protein of unknown function DUF955~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607207~PFAM: Domain of unknown function (DUF955) gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0301 Tresu_0302 Tresu_0302 Tresu_0302 326206 326625 - helix-turn-helix domain protein InterPro IPR001387~KEGG: bpb:bpr_II114 HTH domain-containing protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Helix-turn-helix%3B~IMG reference gene:2504607208~PFAM: Helix-turn-helix gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0302 Tresu_0303 Tresu_0303 Tresu_0303 326938 330486 + helicase domain protein InterPro IPR006935:IPR001650:IPR014001~KEGG: bth:BT_4628 ATP-dependent helicase~PFAM: Helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: Type III restriction enzyme%2C res subunit family%3B~IMG reference gene:2504607209~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0303 Tresu_0304 Tresu_0304 Tresu_0304 330502 333537 + hypothetical protein InterPro IPR011639~KEGG: bth:BT_4627 DNA modification methylase~SPTR: DNA modification methylase%3B~IMG reference gene:2504607210~PFAM: Eco57I restriction endonuclease~TIGRFAM: type II restriction m6 adenine DNA methyltransferase%2C Alw26I/Eco31I/Esp3I family gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0304 Tresu_0305 Tresu_0305 Tresu_0305 333565 334362 - hypothetical protein KEGG: pnu:Pnuc_1117 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607211 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0305 Tresu_0306 Tresu_0306 Tresu_0306 334359 335459 - SMC domain-containing protein KEGG: pnu:Pnuc_1118 SMC domain-containing protein~SPTR: SMC domain protein%3B~IMG reference gene:2504607212 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0306 Tresu_0307 Tresu_0307 Tresu_0307 335756 336184 - hypothetical protein IMG reference gene:2504607213 gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0307 Tresu_0308 Tresu_0308 Tresu_0308 336184 336888 - putative zinc finger/helix-turn-helix protein%2C YgiT family InterPro IPR022452~KEGG: amt:Amet_0867 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Zinc finger/helix-turn-helix protein%2C YgiT~IMG reference gene:2504607214~TIGRFAM: putative zinc finger/helix-turn-helix protein%2C YgiT family gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0308 Tresu_0309 Tresu_0309 Tresu_0309 336881 337219 - hypothetical protein IMG reference gene:2504607215 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0309 Tresu_0310 Tresu_0310 Tresu_0310 337319 338524 - DNA modification methylase BstVI KEGG: bth:BT_4625 DNA modification methylase BstVI~SPTR: Type II restriction-modification enzyme%3B~IMG reference gene:2504607216~PFAM: Eco57I restriction endonuclease gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0310 Tresu_0311 Tresu_0311 Tresu_0311 338553 339158 - Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR006120~KEGG: bth:BT_4624 multiple promoter invertase~PFAM: Resolvase%2C N-terminal%3B Resolvase%2C helix-turn-helix domain~SMART: Resolvase%2C N-terminal~SPTR: Serine type site-specific recombinase%3B~IMG reference gene:2504607217~PFAM: Resolvase%2C N terminal domain%3B Helix-turn-helix domain of resolvase gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0311 Tresu_0312 Tresu_0312 Tresu_0312 339282 339582 - pseudogene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0312 Tresu_0313 Tresu_0313 Tresu_0313 339708 340679 - cell wall/surface repeat protein InterPro IPR013378~KEGG: ssm:Spirs_1955 cell wall/surface repeat protein~PFAM: Listeria/Bacterioides repeat~SPTR: Cell wall/surface repeat protein%3B~TIGRFAM: Listeria/Bacterioides repeat~IMG reference gene:2504607219~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt)~TIGRFAM: Listeria/Bacterioides repeat gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0313 Tresu_0314 Tresu_0314 Tresu_0314 340794 341096 - Listeria/Bacterioides repeat-containing protein InterPro IPR013378~KEGG: ssm:Spirs_1955 cell wall/surface repeat protein~PFAM: Listeria/Bacterioides repeat~SPTR: Transmembrane protein%2C putative%3B~IMG reference gene:2504607220~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt) gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0314 Tresu_0315 Tresu_0315 Tresu_0315 341320 342618 - ATPase COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: fnu:FN1101 ATPase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607221~PFAM: Archaeal ATPase gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0315 Tresu_0316 Tresu_0316 Tresu_0316 342850 343263 + ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~KEGG: csh:Closa_0146 ferric uptake regulator%2C Fur family~SPTR: Fe2+/Zn2+ uptake regulation proteins%3B~manually curated~IMG reference gene:2504607222~PFAM: Ferric uptake regulator family gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0316 Tresu_0317 Tresu_0317 Tresu_0317 343260 343571 + hypothetical protein SPTR: Outer membrane lipoprotein-sorting protein%3B~IMG reference gene:2504607223 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0317 Tresu_0318 Tresu_0318 Tresu_0318 343856 345436 + YodA domain-containing protein COGs: COG3443 periplasmic or secreted protein~InterPro IPR015304:IPR006127~KEGG: shi:Shel_18230 ABC-type metal ion transport system%2C periplasmic component/surface adhesin~PFAM: YodA%3B ABC transporter metal-binding lipoprotein~SPTR: YodA domain protein%3B~IMG reference gene:2504607224~PFAM: YodA%3B Periplasmic solute binding protein family gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0318 Tresu_0319 Tresu_0319 Tresu_0319 345615 346442 + peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin COGs: COG1876 D-alanyl-D-alanine carboxypeptidase~InterPro IPR003709~KEGG: tde:TDE0633 D-alanyl-D-alanine carboxypeptidase%2C putative~PFAM: Peptidase M15B/M15C%2C D%2CD-carboxypeptidase VanY/endolysins~SPTR: Peptidase M15B and M15C%2C D%2CD-carboxypeptidase VanY/endolysins%3B~IMG reference gene:2504607225~PFAM: D-alanyl-D-alanine carboxypeptidase gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0319 Tresu_0320 Tresu_0320 Tresu_0320 346453 347151 + Phosphonate-transporting ATPase COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003439:IPR003593~KEGG: csh:Closa_0143 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC-type Mn/Zn transport systems%2C ATPase component%3B~IMG reference gene:2504607226~PFAM: ABC transporter gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0320 Tresu_0321 Tresu_0321 Tresu_0321 347177 348014 + pseudogene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0321 Tresu_0322 Tresu_0322 Tresu_0322 348011 348709 + hypothetical protein KEGG: fsu:Fisuc_1195 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607228 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0322 Tresu_0323 Tresu_0323 Tresu_0323 348866 349657 - transposase IS4 family protein InterPro IPR002559~KEGG: pna:Pnap_4096 transposase%2C IS4 family protein~PFAM: Transposase%2C IS4-like~SPTR: Putative transposase%3B~IMG reference gene:2504607229~PFAM: Transposase DDE domain gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0323 Tresu_0324 Tresu_0324 Tresu_0324 349755 349880 - hypothetical protein IMG reference gene:2504607230 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0324 Tresu_0325 Tresu_0325 Tresu_0325 349886 350539 - hypothetical protein IMG reference gene:2504607231 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0325 Tresu_0326 Tresu_0326 Tresu_0326 350536 351381 - hypothetical protein KEGG: fsu:Fisuc_0133 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607232 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0326 Tresu_0327 Tresu_0327 Tresu_0327 351393 352118 - von Willebrand factor type A COGs: COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478 contains von Willebrand factor (vWF) domain~InterPro IPR002035~KEGG: fsu:Fisuc_0134 von Willebrand factor type A~PFAM: von Willebrand factor%2C type A~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607233~PFAM: von Willebrand factor type A domain gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0327 Tresu_0328 Tresu_0328 Tresu_0328 352142 353440 - serine/threonine protein kinase COGs: COG0515 Serine/threonine protein kinase~InterPro IPR002290~KEGG: fsu:Fisuc_0135 serine/threonine protein kinase~SMART: Serine/threonine-protein kinase domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607234~PFAM: Protein kinase domain gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0328 Tresu_0329 Tresu_0329 Tresu_0329 353443 353847 - hypothetical protein KEGG: shi:Shel_03930 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607235 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0329 Tresu_0330 Tresu_0330 Tresu_0330 353844 354176 - hypothetical protein IMG reference gene:2504607236 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0330 Tresu_0331 Tresu_0331 Tresu_0331 354239 354835 - hypothetical protein KEGG: cst:CLOST_2486 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607237 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0331 Tresu_0332 Tresu_0332 Tresu_0332 354909 355823 - hypothetical protein IMG reference gene:2504607238 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0332 Tresu_0333 Tresu_0333 Tresu_0333 355829 356449 - hypothetical protein IMG reference gene:2504607239~PFAM: CRISPR-associated protein (cas_TM1812) gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0333 Tresu_0334 Tresu_0334 Tresu_0334 356463 356876 - hypothetical protein IMG reference gene:2504607240 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0334 Tresu_0335 Tresu_0335 Tresu_0335 356978 357745 + hypothetical protein IMG reference gene:2504607241 gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0335 Tresu_0336 Tresu_0336 Tresu_0336 358552 359022 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: ere:EUBREC_2983 hypothetical protein~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Acetyltransferases%3B~IMG reference gene:2504607242~PFAM: Acetyltransferase (GNAT) family gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0336 Tresu_0337 Tresu_0337 Tresu_0337 359035 359853 + Appr-1-p processing domain protein COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1~InterPro IPR002589~KEGG: tde:TDE0674 hypothetical protein~PFAM: Appr-1-p processing~SMART: Appr-1-p processing~SPTR: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1%3B~IMG reference gene:2504607243~PFAM: Macro domain gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0337 Tresu_0338 Tresu_0338 Tresu_0338 359893 361380 - glutamate synthase%2C NADH/NADPH%2C small subunit COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase~InterPro IPR013027:IPR006005~KEGG: ere:EUBREC_2273 glutamate synthase%2C small subunit~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Glutamate synthase (NADH)~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Glutamate synthase%2C NADH/NADPH%2C small subunit 1~IMG reference gene:2504607244~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: glutamate synthases%2C NADH/NADPH%2C small subunit gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0338 Tresu_0339 Tresu_0339 Tresu_0339 361401 365924 - Glutamate synthase (ferredoxin) COGs: COG0069 Glutamate synthase domain 2~InterPro IPR000583:IPR006982:IPR002932:IPR002489~KEGG: bpb:bpr_I0123 glutamate synthase large subunit GltB~PFAM: Glutamate synthase%2C central-C%3B Glutamine amidotransferase%2C class-II%3B Glutamate synthase%2C central-N%3B Glutamate synthase%2C alpha subunit%2C C-terminal~PRIAM: Glutamate synthase (ferredoxin)~SPTR: Glutamate synthase large subunit GltB%3B~IMG reference gene:2504607245~PFAM: Conserved region in glutamate synthase%3B GXGXG motif%3B Glutamate synthase central domain%3B Glutamine amidotransferases class-II gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0339 Tresu_0340 Tresu_0340 Tresu_0340 366135 366554 - protein of unknown function DUF1312 InterPro IPR010739~KEGG: ssm:Spirs_0286 protein of unknown function DUF1312~PFAM: Protein of unknown function DUF1312~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607246~PFAM: Protein of unknown function (DUF1312) gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0340 Tresu_0341 Tresu_0341 Tresu_0341 366722 367435 + rhomboid-like protein KEGG: sta:STHERM_c19270 rhomboid-like protein~SPTR: Rhomboid-like protein%3B~IMG reference gene:2504607247~PFAM: Rhomboid family gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0341 Tresu_0342 Tresu_0342 Tresu_0342 367520 368602 + 6-phosphofructokinase COGs: COG0205 6-phosphofructokinase~HAMAP: Phosphofructokinase~InterPro IPR000023:IPR022953~KEGG: sta:STHERM_c00290 6-phosphofructokinase 3~PFAM: Phosphofructokinase domain~PRIAM: 6-phosphofructokinase~SPTR: 6-phosphofructokinase%3B~IMG reference gene:2504607248~PFAM: Phosphofructokinase~TIGRFAM: phosphofructokinase gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0342 Tresu_0343 Tresu_0343 Tresu_0343 368592 369443 + hypothetical protein COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase~KEGG: tpp:TPASS_0291 hypothetical protein~SPTR: FMN-dependent dehydrogenase family protein%3B~manually curated~IMG reference gene:2504607249~PFAM: FMN-dependent dehydrogenase gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0343 Tresu_0344 Tresu_0344 Tresu_0344 369454 370110 + hypothetical protein COGs: COG4684 membrane protein~KEGG: cac:CA_C0331 hypothetical protein~SPTR: Uncharacterized membrane protein%2C homolog of YPAA B.subtilis%3B~IMG reference gene:2504607250 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0344 Tresu_0345 Tresu_0345 Tresu_0345 370167 370934 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR013123:IPR001537~KEGG: tde:TDE2713 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU%3B RNA 2-O ribose methyltransferase%2C substrate binding~SMART: RNA 2-O ribose methyltransferase%2C substrate binding~SPTR: RNA methyltransferase%2C TrmH family%3B~IMG reference gene:2504607251~PFAM: SpoU rRNA Methylase family%3B RNA 2'-O ribose methyltransferase substrate binding gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0345 Tresu_0346 Tresu_0346 Tresu_0346 370936 371778 + phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase~SPTR: Phosphoesterase PA-phosphatase related protein%3B~IMG reference gene:2504607252~PFAM: PAP2 superfamily gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0346 Tresu_0347 Tresu_0347 Tresu_0347 371781 372779 - Cache domain protein InterPro IPR004089:IPR004010~KEGG: hmo:HM1_1061 methyl-accepting chemotaxis protein~PFAM: Cache%3B Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607253~PFAM: Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0347 Tresu_0348 Tresu_0348 Tresu_0348 373009 373905 + Lipoprotein LpqB%2C GerMN domain protein COGs: COG5401 Spore germination protein~InterPro IPR019606~KEGG: tde:TDE2081 hypothetical protein~PFAM: GerMN domain~SMART: GerMN domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607254~PFAM: Sporulation and spore germination gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0348 Tresu_0349 Tresu_0349 Tresu_0349 373908 374966 - hypothetical protein KEGG: tde:TDE2221 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607255 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0349 Tresu_0350 Tresu_0350 Tresu_0350 374993 376804 - Prolyl-tRNA synthetase COGs: COG0442 Prolyl-tRNA synthetase~HAMAP: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~InterPro IPR002314:IPR007214:IPR004154:IPR004500~KEGG: tde:TDE2220 prolyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B YbaK/aminoacyl-tRNA synthetase-associated domain%3B Anticodon-binding~SPTR: Prolyl-tRNA synthetase%3B~TIGRFAM: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~IMG reference gene:2504607256~PFAM: YbaK / prolyl-tRNA synthetases associated domain%3B Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: prolyl-tRNA synthetase%2C family II gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0350 Tresu_0351 Tresu_0351 Tresu_0351 376958 377416 + flagellar protein FliS COGs: COG1516 Flagellin-specific chaperone FliS~InterPro IPR003713~KEGG: sta:STHERM_c02390 putative flagellar protein FliS~PFAM: Flagellar protein FliS~SPTR: Flagellar protein FliS%3B~TIGRFAM: Flagellar protein FliS~IMG reference gene:2504607257~PFAM: Flagellar protein FliS~TIGRFAM: flagellar biosynthetic protein FliS gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0351 Tresu_0352 Tresu_0352 Tresu_0352 377475 377963 + hypothetical protein KEGG: tde:TDE0118 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607258 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0352 Tresu_0353 Tresu_0353 Tresu_0353 377985 378620 + regulatory protein TetR InterPro IPR001647~KEGG: coc:Coch_0387 transcriptional regulator%2C TetR family~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family protein%3B~IMG reference gene:2504607259~PFAM: Bacterial regulatory proteins%2C tetR family gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0353 Tresu_0354 Tresu_0354 Tresu_0354 378683 380776 + DNA topoisomerase type IIA subunit B region 2 domain protein COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterPro IPR003594:IPR013506:IPR001241~KEGG: tde:TDE2245 DNA topoisomerase IV subunit B~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2%3B ATPase-like%2C ATP-binding domain~SMART: DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%3B ATPase-like%2C ATP-binding domain~SPTR: Topoisomerase IV%2C B subunit%2C putative%3B~IMG reference gene:2504607260~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0354 Tresu_0355 Tresu_0355 Tresu_0355 380787 382766 + DNA topoisomerase (ATP-hydrolyzing) COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterPro IPR002205:IPR019352~KEGG: tde:TDE2118 DNA topoisomerase IV subunit A~PFAM: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal%3B Protein of unknown function DUF2054~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal~SPTR: Topoisomerase IV%2C A subunit%2C putative%3B~IMG reference gene:2504607261~PFAM: DNA gyrase/topoisomerase IV%2C subunit A gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0355 Tresu_0356 Tresu_0356 Tresu_0356 382789 383691 + hypothetical protein IMG reference gene:2504607262 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0356 Tresu_0357 Tresu_0357 Tresu_0357 383675 384262 + Uncharacterized protein family UPF0029%2C Impact%2C N-terminal COGs: COG1739 conserved hypothetical protein~InterPro IPR001498~KEGG: tde:TDE1321 hypothetical protein~PFAM: Uncharacterised protein family UPF0029%2C Impact%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607263~PFAM: Uncharacterized protein family UPF0029%3B Domain of unknown function (DUF1949)~TIGRFAM: uncharacterized protein%2C YigZ family gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0357 Tresu_0358 Tresu_0358 Tresu_0358 384253 385051 + pseudogene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0358 Tresu_0359 Tresu_0359 Tresu_0359 385110 386330 + tRNA-specific 2-thiouridylase mnmA COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain~HAMAP: tRNA-specific 2-thiouridylase~InterPro IPR004506~KEGG: emi:Emin_0088 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~PFAM: tRNA-specific 2-thiouridylase~SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase%3B~TIGRFAM: tRNA-specific 2-thiouridylase~manually curated~IMG reference gene:2504607265~PFAM: tRNA methyl transferase~TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0359 Tresu_0360 Tresu_0360 Tresu_0360 386327 387190 - Peptidase M23 InterPro IPR016047~KEGG: tde:TDE1929 hypothetical protein~PFAM: Peptidase M23~SPTR: M23 peptidase domain protein%3B~IMG reference gene:2504607266~PFAM: Peptidase family M23 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0360 Tresu_0361 Tresu_0361 Tresu_0361 387281 388345 - hypothetical protein KEGG: tde:TDE1930 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607267 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0361 Tresu_0362 Tresu_0362 Tresu_0362 388625 388840 + hypothetical protein IMG reference gene:2504607268 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0362 Tresu_0363 Tresu_0363 Tresu_0363 388978 390123 + hypothetical protein IMG reference gene:2504607269 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0363 Tresu_0364 Tresu_0364 Tresu_0364 390364 391362 - filamentation induced by cAMP protein Fic COGs: COG3943 Virulence protein~InterPro IPR003812~KEGG: dap:Dacet_2826 death-on-curing family protein~PFAM: Filamentation induced by cAMP/death on curing-related~SPTR: Death-on-curing family protein%3B~IMG reference gene:2504607270~PFAM: Fic/DOC family gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0364 Tresu_0365 Tresu_0365 Tresu_0365 391433 391832 - pseudogene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0365 Tresu_0366 Tresu_0366 Tresu_0366 391878 392288 - pseudogene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0366 Tresu_0367 Tresu_0367 Tresu_0367 393310 394764 + glycyl-tRNA synthetase COGs: COG0423 Glycyl-tRNA synthetase (class II)~InterPro IPR002314:IPR004154:IPR002315~KEGG: tde:TDE0020 glycyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Anticodon-binding~SPTR: Glycyl-tRNA synthetase%3B~TIGRFAM: Glycyl-tRNA synthetase%2C alpha2 dimer~IMG reference gene:2504607273~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: glycyl-tRNA synthetase%2C dimeric type gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0367 Tresu_0368 Tresu_0368 Tresu_0368 394882 395664 + NADP-dependent oxidoreductase domain protein COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR023210~KEGG: msi:Msm_1450 aldo/keto reductase family oxidoreductase~PFAM: NADP-dependent oxidoreductase domain~SPTR: Oxidoreductase%2C aldo/keto reductase family%3B~IMG reference gene:2504607274~PFAM: Aldo/keto reductase family gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0368 Tresu_0369 Tresu_0369 Tresu_0369 395903 396625 - pseudogene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0369 Tresu_0370 Tresu_0370 Tresu_0370 396913 397242 + hypothetical protein IMG reference gene:2504607276 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0370 Tresu_0371 Tresu_0371 Tresu_0371 397259 398170 + hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607277 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0371 Tresu_0372 Tresu_0372 Tresu_0372 399722 401539 - protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: tde:TDE1315 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Conserved domain protein%3B~IMG reference gene:2504607278~PFAM: Protein of unknown function DUF115 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0372 Tresu_0373 Tresu_0373 Tresu_0373 401520 403394 - Peptidoglycan glycosyltransferase COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR005311:IPR001460:IPR005543~KEGG: tde:TDE1314 penicillin-binding protein~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain%3B PASTA~PRIAM: Peptidoglycan glycosyltransferase~SMART: PASTA~SPTR: Penicillin-binding protein%3B~IMG reference gene:2504607279~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain%3B PASTA domain gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0373 Tresu_0374 Tresu_0374 Tresu_0374 403391 403900 - signal peptidase I InterPro IPR019759:IPR000223~KEGG: tde:TDE1313 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Signal peptidase I%3B~TIGRFAM: Peptidase S26A%2C signal peptidase I~IMG reference gene:2504607280~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0374 Tresu_0375 Tresu_0375 Tresu_0375 403961 405169 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047:IPR002482~KEGG: tde:TDE2753 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504607281~PFAM: Peptidase family M23%3B LysM domain gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0375 Tresu_0376 Tresu_0376 Tresu_0376 405188 407410 + polysaccharide deacetylase InterPro IPR002509~KEGG: tde:TDE2434 polysaccharide deacetylase family protein~PFAM: Polysaccharide deacetylase~SPTR: Polysaccharide deacetylase family protein%3B~IMG reference gene:2504607282~PFAM: WD40-like Beta Propeller Repeat%3B Polysaccharide deacetylase gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0376 Tresu_0377 Tresu_0377 Tresu_0377 407483 408151 + hypothetical protein KEGG: tde:TDE1228 pentapeptide repeat-containing protein~SPTR: Pentapeptide repeat family protein%3B~IMG reference gene:2504607283 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0377 Tresu_0378 Tresu_0378 Tresu_0378 408148 408714 + beta-lactamase domain protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~InterPro IPR001279~KEGG: ssm:Spirs_2469 hypothetical protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: GloB protein%3B~IMG reference gene:2504607284~PFAM: Metallo-beta-lactamase superfamily gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0378 Tresu_0379 Tresu_0379 Tresu_0379 408718 410469 - hypothetical protein KEGG: ssm:Spirs_2772 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607285 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0379 Tresu_0380 Tresu_0380 Tresu_0380 410515 410961 + hypothetical protein IMG reference gene:2504607286 gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0380 Tresu_0381 Tresu_0381 Tresu_0381 410965 411456 - acetolactate synthase%2C small subunit COGs: COG0440 Acetolactate synthase small (regulatory) subunit~InterPro IPR002912:IPR019455:IPR004789~KEGG: cbe:Cbei_0212 acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit%2C C-terminal%3B Amino acid-binding ACT~SPTR: Acetolactate synthase%2C small subunit%3B~TIGRFAM: Acetolactate synthase%2C small subunit~IMG reference gene:2504607287~PFAM: ACT domain%3B Small subunit of acetolactate synthase~TIGRFAM: acetolactate synthase%2C small subunit gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0381 Tresu_0382 Tresu_0382 Tresu_0382 411490 413430 - phospho-2-dehydro-3-deoxyheptonate aldolase COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006218:IPR001086:IPR002912:IPR006268~KEGG: ssm:Spirs_0275 phospho-2-dehydro-3-deoxyheptonate aldolase~PFAM: DAHP synthetase I/KDSA%3B Prephenate dehydratase%3B Amino acid-binding ACT~PRIAM: 3-deoxy-7-phosphoheptulonate synthase.%2C Prephenate dehydratase~SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase%3B~TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C subtype 2~IMG reference gene:2504607288~PFAM: Prephenate dehydratase%3B DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0382 Tresu_0383 Tresu_0383 Tresu_0383 413543 416035 - aspartate kinase COGs: COG0527 Aspartokinase~InterProIPR001048:IPR002912:IPR005106:IPR001342:IPR 001341~KEGG: vfm:VFMJ11_2224 bifunctional aspartokinase I/homeserine dehydrogenase I~PFAM: Homoserine dehydrogenase%2C catalytic%3B Aspartate/glutamate/uridylate kinase%3B Amino acid-binding ACT%3B Aspartate/homoserine dehydrogenase%2C NAD-binding~SPTR: Fused aspartokinase I and homoserine dehydrogenase I%3B~TIGRFAM: Aspartate kinase domain~IMG reference gene:2504607289~PFAM: Homoserine dehydrogenase%3B Homoserine dehydrogenase%2C NAD binding domain%3B ACT domain%3B Amino acid kinase family~TIGRFAM: aspartate kinase gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0383 Tresu_0384 Tresu_0384 Tresu_0384 416828 417568 + hypothetical protein IMG reference gene:2504607290 gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0384 Tresu_0385 Tresu_0385 Tresu_0385 417565 418503 + metallophosphoesterase COGs: COG1409 phosphohydrolase~InterPro IPR004843~KEGG: tde:TDE1698 serine/threonine protein phosphatase family protein~PFAM: Metallo-dependent phosphatase~SPTR: Serine/threonine protein phosphatase family protein%3B~IMG reference gene:2504607291~PFAM: Calcineurin-like phosphoesterase gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0385 Tresu_0386 Tresu_0386 Tresu_0386 418551 418961 - Class I peptide chain release factor COGs: COG1186 Protein chain release factor B~InterPro IPR000352~KEGG: cts:Ctha_2644 class I peptide chain release factor~PFAM: Peptide chain release factor class I/class II~SPTR: Class I peptide chain release factor%3B~IMG reference gene:2504607292~PFAM: RF-1 domain gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0386 Tresu_0387 Tresu_0387 Tresu_0387 419047 420141 - aspartate-semialdehyde dehydrogenase COGs: COG0136 Aspartate-semialdehyde dehydrogenase~InterPro IPR000534:IPR012280:IPR005676~KEGG: cpy:Cphy_0426 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD-binding~PRIAM: Aspartate-semialdehyde dehydrogenase~SMART: Semialdehyde dehydrogenase%2C NAD-binding~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Aspartate-semialdehyde dehydrogenase%2C peptidoglycan lacking~IMG reference gene:2504607293~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0387 Tresu_0388 Tresu_0388 Tresu_0388 420191 421105 - Dihydrodipicolinate synthase COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase~HAMAP: Dihydrodipicolinate synthase~InterPro IPR002220:IPR005263~KEGG: pcu:pc0686 putative dihydrodipicolinate synthase~PFAM: Dihydrodipicolinate synthetase~PRIAM: Dihydrodipicolinate synthase~SPTR: Dihydrodipicolinate synthase%3B~TIGRFAM: Dihydrodipicolinate synthase subfamily~IMG reference gene:2504607294~PFAM: Dihydrodipicolinate synthetase family~TIGRFAM: dihydrodipicolinate synthase gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0388 Tresu_0389 Tresu_0389 Tresu_0389 421415 423595 + transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR000792~KEGG: fbl:Fbal_3385 two component transcriptional regulator%2C LuxR family~PFAM: Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal~SPTR: Two component transcriptional regulator%2C LuxR family%3B~IMG reference gene:2504607295~PFAM: Bacterial regulatory proteins%2C luxR family gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0389 Tresu_0390 Tresu_0390 Tresu_0390 423638 424699 + chorismate synthase COGs: COG0082 Chorismate synthase~InterPro IPR000453~KEGG: ssm:Spirs_1446 chorismate synthase~PFAM: Chorismate synthase~PRIAM: Chorismate synthase~SPTR: Chorismate synthase%3B~TIGRFAM: Chorismate synthase~IMG reference gene:2504607296~PFAM: Chorismate synthase~TIGRFAM: chorismate synthase gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0390 Tresu_0391 Tresu_0391 Tresu_0391 424702 426141 + Serine-type D-Ala-D-Ala carboxypeptidase COGs: COG1686 D-alanyl-D-alanine carboxypeptidase~InterPro IPR001967~KEGG: tde:TDE0979 penicillin binding protein~PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A%2C N-terminal~PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase~SPTR: D-alanyl-D-alanine carboxypeptidase DacA%3B~IMG reference gene:2504607297~PFAM: D-alanyl-D-alanine carboxypeptidase%3B Penicillin-binding protein 5%2C C-terminal domain gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0391 Tresu_0392 Tresu_0392 Tresu_0392 426169 427005 + Glutamate racemase COGs: COG0796 Glutamate racemase~HAMAP: Glutamate racemase~InterPro IPR015942:IPR004391~KEGG: tde:TDE1448 glutamate racemase%2C putative~PFAM: Asp/Glu/hydantoin racemase~PRIAM: Glutamate racemase~SPTR: Glutamate racemase%3B~TIGRFAM: Glutamate racemase~IMG reference gene:2504607298~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: glutamate racemase gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0392 Tresu_0393 Tresu_0393 Tresu_0393 427025 428227 - isocitrate dehydrogenase%2C NADP-dependent COGs: COG0538 Isocitrate dehydrogenase~InterPro IPR001804:IPR004790~KEGG: bpb:bpr_I1102 isocitrate dehydrogenase Icd~PFAM: Isocitrate/isopropylmalate dehydrogenase~SPTR: Probable isocitrate dehydrogenase [NADP]%3B~TIGRFAM: Isocitrate dehydrogenase NADP-dependent%2C eukaryotic~IMG reference gene:2504607299~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent%2C eukaryotic type gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0393 Tresu_0394 Tresu_0394 Tresu_0394 428265 429044 - methionine aminopeptidase%2C type I COGs: COG0024 Methionine aminopeptidase~InterPro IPR000994:IPR002467~KEGG: tde:TDE1733 methionine aminopeptidase%2C type I~PFAM: Peptidase M24%2C structural domain~PRIAM: Methionyl aminopeptidase~SPTR: Methionine aminopeptidase%3B~TIGRFAM: Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1~IMG reference gene:2504607300~PFAM: Metallopeptidase family M24~TIGRFAM: methionine aminopeptidase%2C type I gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0394 Tresu_0395 Tresu_0395 Tresu_0395 429064 429828 - heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623~KEGG: tde:TDE1732 hypothetical protein~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: DnaJ domain protein%3B~IMG reference gene:2504607301~PFAM: DnaJ domain gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0395 Tresu_0396 Tresu_0396 Tresu_0396 429975 430289 + glutamyl-tRNA(Gln) amidotransferase%2C C subunit COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit~InterPro IPR003837~KEGG: tde:TDE0577 glutamyl-tRNA(Gln) amidotransferase%2C C subunit~SPTR: Glutamyl-tRNA(Gln) amidotransferase%2C C subunit%3B~TIGRFAM: Glu-tRNAGln amidotransferase%2C C subunit~IMG reference gene:2504607302~PFAM: Glu-tRNAGln amidotransferase C subunit~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C C subunit gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0396 Tresu_0397 Tresu_0397 Tresu_0397 430291 431796 + Glutamyl-tRNA(Gln) amidotransferase subunit A COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase~HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit~InterPro IPR000120:IPR004412~KEGG: tde:TDE0576 aspartyl/glutamyl-tRNA amidotransferase subunit A~PFAM: Amidase~SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A%3B~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit~IMG reference gene:2504607303~PFAM: Amidase~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C A subunit gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0397 Tresu_0398 Tresu_0398 Tresu_0398 431799 433340 + Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~HAMAP: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~InterPro IPR006075:IPR018027:IPR004413~KEGG: tde:TDE0575 aspartyl/glutamyl-tRNA amidotransferase subunit B~PFAM: Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C N-terminal%3B Asn/Gln amidotransferase~SMART: Asn/Gln amidotransferase~SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%3B~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~IMG reference gene:2504607304~PFAM: GatB/GatE catalytic domain%3B GatB domain~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C B subunit gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0398 Tresu_0399 Tresu_0399 Tresu_0399 433582 434151 + hypothetical protein KEGG: bpo:BP951000_1618 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607305 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0399 Tresu_0400 Tresu_0400 Tresu_0400 434159 434575 + flavodoxin COGs: COG0716 Flavodoxins~InterPro IPR008254:IPR010087~KEGG: cac:CA_C0587 flavodoxin~PFAM: Flavodoxin/nitric oxide synthase~SPTR: Flavodoxin%2C short chain%3B~TIGRFAM: Flavodoxin%2C short chain~IMG reference gene:2504607306~PFAM: Flavodoxin~TIGRFAM: flavodoxin%2C short chain gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0400 Tresu_0401 Tresu_0401 Tresu_0401 434723 434992 - ACT domain-containing protein COGs: COG3830 ACT domain-containing protein~HAMAP: Uncharacterised protein family UPF0237%2C ACT domain-containing~InterPro IPR002912:IPR022986~KEGG: lsl:LSL_0161 hypothetical protein~PFAM: Amino acid-binding ACT~SPTR: UPF0237 protein POTG_03406%3B~IMG reference gene:2504607307~PFAM: ACT domain gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0401 Tresu_0402 Tresu_0402 Tresu_0402 435100 437871 - Beta-glucosidase COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR002772:IPR001764~KEGG: pin:Ping_2107 glycoside hydrolase family 3 protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal%3B Glycoside hydrolase%2C family 3%2C C-terminal~PRIAM: Beta-glucosidase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607308~PFAM: Glycosyl hydrolase family 3 C terminal domain%3B Glycosyl hydrolase family 3 N terminal domain gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0402 Tresu_0403 Tresu_0403 Tresu_0403 438018 438905 + transcriptional regulator with cupin sensor%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR013096:IPR000005:IPR018060~KEGG: cbe:Cbei_3440 helix-turn-helix domain-containing protein~PFAM: Cupin 2%2C conserved barrel%3B HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: Helix-turn-helix domain protein%3B~IMG reference gene:2504607309~PFAM: Cupin domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0403 Tresu_0404 Tresu_0404 Tresu_0404 438993 439439 + putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: tpp:TPASS_0085 PTS system%2C nitrogen regulatory IIA component~PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: PTS system%2C IIA component%3B~IMG reference gene:2504607310~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0404 Tresu_0405 Tresu_0405 Tresu_0405 439610 440566 + (Acyl-carrier-protein) S-malonyltransferase COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase~InterPro IPR014043:IPR020801~KEGG: tde:TDE0601 malonyl CoA-acyl carrier protein transacylase%2C putative~PFAM: Acyl transferase~PRIAM: [Acyl-carrier-protein] S-malonyltransferase~SMART: Polyketide synthase%2C acyl transferase domain~SPTR: Malonyl CoA-acyl carrier protein transacylase%2C putative%3B~IMG reference gene:2504607311~PFAM: Acyl transferase domain~TIGRFAM: malonyl CoA-acyl carrier protein transacylase gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0405 Tresu_0406 Tresu_0406 Tresu_0406 440584 441327 + 3-oxoacyl-(acyl-carrier-protein) reductase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198:IPR020842~KEGG: tde:TDE0598 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR~PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase~SMART: Polyketide synthase/Fatty acid synthase%2C KR~SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase%3B~IMG reference gene:2504607312~PFAM: short chain dehydrogenase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0406 Tresu_0407 Tresu_0407 Tresu_0407 441381 442628 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase~InterPro IPR014030:IPR014031:IPR017568:IPR020841~KEGG: tde:TDE0038 3-oxoacyl-(acyl-carrier-protein) synthase II~PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II~SMART: Polyketide synthase%2C beta-ketoacyl synthase domain~SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase II%3B~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~IMG reference gene:2504607313~PFAM: Beta-ketoacyl synthase%2C N-terminal domain%3B Beta-ketoacyl synthase%2C C-terminal domain~TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0407 Tresu_0408 Tresu_0408 Tresu_0408 442633 443064 + Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase~InterPro IPR013114~KEGG: tde:TDE0823 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase%2C putative~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ~SPTR: (3R)-hydroxymyristoyl-(Acyl-carrier-protein) dehydratase%2C putative%3B~IMG reference gene:2504607314~PFAM: FabA-like domain gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0408 Tresu_0409 Tresu_0409 Tresu_0409 443061 443693 - hypothetical protein IMG reference gene:2504607315 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0409 Tresu_0410 Tresu_0410 Tresu_0410 443774 444220 + Nucleoside diphosphate kinase COGs: COG0105 Nucleoside diphosphate kinase~HAMAP: Nucleoside diphosphate kinase~InterPro IPR001564~KEGG: apo:Arcpr_0498 nucleoside-diphosphate kinase~PFAM: Nucleoside diphosphate kinase~PRIAM: Nucleoside-diphosphate kinase~SMART: Nucleoside diphosphate kinase~SPTR: Nucleoside diphosphate kinase%3B~manually curated~IMG reference gene:2504607316~PFAM: Nucleoside diphosphate kinase gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0410 Tresu_0411 Tresu_0411 Tresu_0411 444401 445456 + Glycerol-3-phosphate dehydrogenase (NAD(P)+) COGs: COG0240 Glycerol-3-phosphate dehydrogenase~HAMAP: Glycerol-3-phosphate dehydrogenase%2C NAD-dependent~InterPro IPR011128:IPR006109:IPR006168~KEGG: tde:TDE2090 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase~PFAM: Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal%3B Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal~SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]%3B~IMG reference gene:2504607317~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus%3B NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0411 Tresu_0412 Tresu_0412 Tresu_0412 445481 446875 + signal recognition particle protein COGs: COG0541 Signal recognition particle GTPase~InterProIPR013822:IPR000897:IPR004125:IPR004780:IPR 003593~KEGG: tde:TDE2089 signal recognition particle protein~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B Signal recognition particle%2C SRP54 subunit%2C M-domain~SMART: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B ATPase%2C AAA+ type%2C core~SPTR: Signal recognition particle protein%3B~TIGRFAM: Signal recognition particle%2C SRP~IMG reference gene:2504607318~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain%3B Signal peptide binding domain~TIGRFAM: signal recognition particle protein gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0412 Tresu_0413 Tresu_0413 Tresu_0413 446872 447603 - hypothetical protein KEGG: tde:TDE0642 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607319 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0413 Tresu_0414 Tresu_0414 Tresu_0414 447760 451104 + hypothetical protein InterPro IPR019734~KEGG: tde:TDE1092 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607320 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0414 Tresu_0415 Tresu_0415 Tresu_0415 451107 451757 + phosphatidate cytidylyltransferase COGs: COG0170 Dolichol kinase~InterPro IPR000374~KEGG: tde:TDE2717 phosphatidate cytidylyltransferase%2C putative~PFAM: Phosphatidate cytidylyltransferase~SPTR: Phosphatidate cytidylyltransferase%2C putative%3B~IMG reference gene:2504607321~PFAM: Cytidylyltransferase family gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0415 Tresu_0416 Tresu_0416 Tresu_0416 451754 452584 - hypothetical protein KEGG: tde:TDE1445 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504607322 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0416 Tresu_0417 Tresu_0417 Tresu_0417 452738 453439 + Protein of unknown function DUF2259%2C secreted COGs: COG5497 secreted protein~InterPro IPR018725~KEGG: ssm:Spirs_0260 protein of unknown function DUF2259%2C secreted~PFAM: Protein of unknown function DUF2259%2C secreted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607323~PFAM: Predicted secreted protein (DUF2259) gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0417 Tresu_0418 Tresu_0418 Tresu_0418 453563 454795 + LL-diaminopimelate aminotransferase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~HAMAP: LL-diaminopimelate aminotransferase~InterPro IPR004839:IPR019942~KEGG: vcn:VOLCADRAFT_81843 hypothetical protein~PFAM: Aminotransferase%2C class I/classII~PRIAM: LL-diaminopimelate aminotransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: LL-diaminopimelate aminotransferase%2C plant-related~IMG reference gene:2504607324~PFAM: Aminotransferase class I and II~TIGRFAM: LL-diaminopimelate aminotransferase gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0418 Tresu_0419 Tresu_0419 Tresu_0419 454870 455994 + Histidinol-phosphate aminotransferase COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~HAMAP: Histidinol-phosphate aminotransferase~InterPro IPR004839:IPR005861~KEGG: sat:SYN_01517 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/classII~PRIAM: Histidinol-phosphate transaminase~SPTR: Histidinol-phosphate aminotransferase%3B~TIGRFAM: Histidinol-phosphate aminotransferase~IMG reference gene:2504607325~PFAM: Aminotransferase class I and II~TIGRFAM: histidinol-phosphate aminotransferase gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0419 Tresu_0420 Tresu_0420 Tresu_0420 456020 456694 + metallophosphoesterase COGs: COG2129 phosphoesterase related to the Icc protein~InterPro IPR004843~KEGG: tde:TDE2514 serine/threonine protein phosphatase family protein~PFAM: Metallo-dependent phosphatase~SPTR: Serine/threonine protein phosphatase family protein%3B~IMG reference gene:2504607326~PFAM: Calcineurin-like phosphoesterase gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0420 Tresu_0421 Tresu_0421 Tresu_0421 456754 458601 + alpha amylase catalytic region COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterPro IPR004193:IPR006047:IPR006589~KEGG: hor:Hore_13880 pullulanase%2C type I~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic domain%3B Glycoside hydrolase%2C family 13%2C N-terminal~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain~SPTR: Pullulanase%2C type I%3B~IMG reference gene:2504607327~PFAM: Alpha amylase%2C catalytic domain%3B Carbohydrate-binding module 48 (Isoamylase N-terminal domain)~TIGRFAM: pullulanase%2C type I gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0421 Tresu_0422 Tresu_0422 Tresu_0422 458707 459920 - pseudogene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0422 Tresu_0423 Tresu_0423 Tresu_0423 460152 460271 + hypothetical protein IMG reference gene:2504607329 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0423 Tresu_0424 Tresu_0424 Tresu_0424 460418 461083 - hypothetical protein KEGG: cha:CHAB381_0695 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607330 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0424 Tresu_0425 Tresu_0425 Tresu_0425 461110 461337 - hypothetical protein IMG reference gene:2504607331 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0425 Tresu_0426 Tresu_0426 Tresu_0426 461595 461867 - hypothetical protein IMG reference gene:2504607332 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0426 Tresu_0427 Tresu_0427 Tresu_0427 461899 462090 - hypothetical protein IMG reference gene:2504607333 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0427 Tresu_0428 Tresu_0428 Tresu_0428 468172 469302 + transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504607338~PFAM: Transposase DDE domain gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0428 Tresu_0429 Tresu_0429 Tresu_0429 469411 470157 + hypothetical protein KEGG: tde:TDE0731 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607339 gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0429 Tresu_0430 Tresu_0430 Tresu_0430 470158 470763 + hypothetical protein KEGG: pin:Ping_2264 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504607340~TIGRFAM: uncharacterized proteobacterial lipoprotein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0430 Tresu_0431 Tresu_0431 Tresu_0431 470832 472238 + hypothetical protein COGs: COG3014 conserved hypothetical protein~KEGG: cts:Ctha_1249 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607341 gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0431 Tresu_0432 Tresu_0432 Tresu_0432 472226 473260 + hypothetical protein KEGG: brm:Bmur_0114 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607342 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0432 Tresu_0433 Tresu_0433 Tresu_0433 473562 475532 + Chaperone protein htpG COGs: COG0326 Molecular chaperone HSP90 family~HAMAP: Chaperone protein HtpG~InterPro IPR003594:IPR020576:IPR001404~KEGG: tde:TDE2480 heat shock protein 90~PFAM: Heat shock protein Hsp90%2C C-terminal%3B ATPase-like%2C ATP-binding domain~SPTR: Chaperone protein htpG%3B~IMG reference gene:2504607344~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Hsp90 protein gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0433 Tresu_0434 Tresu_0434 Tresu_0434 475632 476363 + RelA/SpoT domain protein COGs: COG2357 conserved hypothetical protein~InterPro IPR007685~KEGG: clj:CLJU_c19960 hypothetical protein~PFAM: RelA/SpoT~SMART: RelA/SpoT~SPTR: Conserved protein with RelA/SpoT domain%3B~IMG reference gene:2504607345~PFAM: Region found in RelA / SpoT proteins gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0434 Tresu_0435 Tresu_0435 Tresu_0435 476559 476933 + iron (metal) dependent repressor%2C DtxR family COGs: COG1321 Mn-dependent transcriptional regulator protein~InterPro IPR022687:IPR001367:IPR022689~KEGG: bpb:bpr_I1635 DtxR family transcriptional regulator~PFAM: Iron dependent repressor%2C N-terminal%3B Iron dependent repressor~SMART: Iron dependent repressor%2C diptheria toxin type~SPTR: Transcriptional regulator DtxR family%3B~IMG reference gene:2504607346~PFAM: Iron dependent repressor%2C metal binding and dimerisation domain%3B Iron dependent repressor%2C N-terminal DNA binding domain gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0435 Tresu_0436 Tresu_0436 Tresu_0436 476935 478374 + Argininosuccinate lyase COGs: COG0165 Argininosuccinate lyase~HAMAP: Argininosuccinate lyase~InterPro IPR022761:IPR009049~KEGG: cbe:Cbei_4516 argininosuccinate lyase~PFAM: Lyase 1%2C N-terminal~PRIAM: Argininosuccinate lyase~SPTR: Argininosuccinate lyase%3B~TIGRFAM: Argininosuccinate lyase~IMG reference gene:2504607347~PFAM: Lyase~TIGRFAM: argininosuccinate lyase gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0436 Tresu_0437 Tresu_0437 Tresu_0437 478397 479167 + ABC-type transporter%2C periplasmic subunit family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638~KEGG: tjr:TherJR_0419 extracellular solute-binding protein family 3~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3~SPTR: Extracellular solute-binding protein family 3%3B~IMG reference gene:2504607348~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0437 Tresu_0438 Tresu_0438 Tresu_0438 479235 479909 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR000515:IPR010065~KEGG: cce:Ccel_0886 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Polar amino acid ABC transporter%2C inner membrane subunit%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~IMG reference gene:2504607349~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0438 Tresu_0439 Tresu_0439 Tresu_0439 479893 480651 + Phosphonate-transporting ATPase COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: cce:Ccel_0887 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607350~PFAM: ABC transporter gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0439 Tresu_0440 Tresu_0440 Tresu_0440 480865 482514 + Inorganic diphosphatase COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase~InterPro IPR000644:IPR010766:IPR001667:IPR004097~KEGG: gur:Gura_4157 putative manganese-dependent inorganic pyrophosphatase~PFAM: Cystathionine beta-synthase%2C core%3B DRTGG%3B Phosphoesterase%2C RecJ-like%3B DHHA2~PRIAM: Inorganic diphosphatase~SPTR: Inorganic diphosphatase%3B~IMG reference gene:2504607352~PFAM: DHH family%3B DRTGG domain%3B DHHA2 domain%3B CBS domain gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0440 Tresu_0441 Tresu_0441 Tresu_0441 482521 482874 - Hpt domain-containing protein KEGG: bpb:bpr_I1819 Hpt domain-containing protein~SPTR: Hpt domain%3B~IMG reference gene:2504607353~PFAM: Hpt domain gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0441 Tresu_0442 Tresu_0442 Tresu_0442 483163 484125 + Sulfate-transporting ATPase COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: ssm:Spirs_0361 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504607354~PFAM: ABC transporter gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0442 Tresu_0443 Tresu_0443 Tresu_0443 484142 484837 + ABC-2 type transporter InterPro IPR013525~KEGG: ssm:Spirs_0360 ABC-type transport system%2C membrane protein~PFAM: ABC-2 type transporter~SPTR: ABC-type transport system%2C membrane protein%3B~IMG reference gene:2504607355 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0443 Tresu_0444 Tresu_0444 Tresu_0444 484841 486907 + ABC-type uncharacterized transport system COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component~InterPro IPR019196~KEGG: ssm:Spirs_0359 ABC-type uncharacterized transport system~PFAM: ABC-type uncharacterised transport system~SPTR: ABC-type uncharacterized transport system%3B~IMG reference gene:2504607356~PFAM: ABC-type uncharacterized transport system gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0444 Tresu_0445 Tresu_0445 Tresu_0445 486925 487467 + hypothetical protein KEGG: ssm:Spirs_0358 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607357 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0445 Tresu_0446 Tresu_0446 Tresu_0446 487475 488242 - pseudouridine synthase Rsu COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR002942:IPR006145:IPR000748~KEGG: thx:Thet_0044 pseudouridine synthase~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~SMART: RNA-binding S4~SPTR: Pseudouridine synthase%3B~TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~IMG reference gene:2504607358~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0446 Tresu_0447 Tresu_0447 Tresu_0447 488686 491475 + DNA polymerase I COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains~InterProIPR020046:IPR020047:IPR002562:IPR001098:IPR 018320:IPR002421:IPR008918~KEGG: tde:TDE1637 DNA polymerase I~PFAM: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C alpha-helical arch%2C N-terminal%3B 5'-3' exonuclease%2C SAM-fold domain%3B 3'-5' exonuclease~SMART: 5'-3' exonuclease%2C N-terminal%3B Helix-hairpin-helix motif%2C class 2%3B 3'-5' exonuclease%3B DNA-directed DNA polymerase%2C family A%2C palm domain~SPTR: DNA polymerase I%3B~TIGRFAM: DNA polymerase 1~IMG reference gene:2504607359~PFAM: 5'-3' exonuclease%2C C-terminal SAM fold%3B 3'-5' exonuclease%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B DNA polymerase family A~TIGRFAM: DNA polymerase I gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0447 Tresu_0448 Tresu_0448 Tresu_0448 491475 492071 + dephospho-CoA kinase COGs: COG0237 Dephospho-CoA kinase~InterPro IPR001977~KEGG: tde:TDE1638 dephospho-CoA kinase%2C putative~PFAM: Dephospho-CoA kinase~SPTR: Dephospho-CoA kinase%3B~TIGRFAM: Dephospho-CoA kinase~IMG reference gene:2504607360~PFAM: Dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0448 Tresu_0449 Tresu_0449 Tresu_0449 492185 493123 + Sporulation domain-containing protein InterPro IPR007730~KEGG: tde:TDE1639 sporulation repeat-containing protein~PFAM: Sporulation-related domain~SPTR: Sporulation related repeat protein%3B~IMG reference gene:2504607361~PFAM: Sporulation related domain gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0449 Tresu_0450 Tresu_0450 Tresu_0450 493129 493611 + ybaK/ebsC protein COGs: COG2606 conserved hypothetical protein~InterPro IPR007214:IPR004369~KEGG: sdl:Sdel_0896 YbaK/EbsC protein~PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain~SPTR: YbaK/ebsC protein%3B~TIGRFAM: Prolyl-tRNA editing protein%2C YbaK/EbsC~IMG reference gene:2504607362~PFAM: YbaK / prolyl-tRNA synthetases associated domain~TIGRFAM: ybaK/ebsC protein gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0450 Tresu_0451 Tresu_0451 Tresu_0451 493683 495032 + electron transport complex%2C RnfABCDGE type%2C C subunit COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC~InterPro IPR011538:IPR019554:IPR001450:IPR010208~KEGG: tde:TDE0838 Na(+)-translocating NADH-quinone reductase%2C A subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit%3B Soluble ligand binding domain%3B 4Fe-4S binding domain~SPTR: Na(+)-translocating NADH-quinone reductase%2C A subunit%3B~TIGRFAM: Electron transport complex%2C RnfC~IMG reference gene:2504607363~PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C C subunit gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0451 Tresu_0452 Tresu_0452 Tresu_0452 495029 496060 + electron transport complex%2C RnfABCDGE type%2C D subunit COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD~InterPro IPR004338:IPR011303~KEGG: tde:TDE0837 Na(+)-translocating NADH-quinone reductase%2C B subunit~PFAM: NADH-quinone reductase NQR2/RnfD~SPTR: Na(+)-translocating NADH-quinone reductase%2C B subunit%3B~TIGRFAM: Electron transport complex%2C RnfD~IMG reference gene:2504607364~PFAM: NQR2%2C RnfD%2C RnfE family~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C D subunit gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0452 Tresu_0453 Tresu_0453 Tresu_0453 496057 496659 + FMN-binding domain protein COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG~InterPro IPR007329~KEGG: tde:TDE0836 Na(+)-translocating NADH-quinone reductase%2C C subunit~PFAM: FMN-binding~SMART: FMN-binding~SPTR: Electron transport complex%2C rnfabcdGe type%2C g subunit%3B~IMG reference gene:2504607365~PFAM: FMN-binding domain~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C G subunit gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0453 Tresu_0454 Tresu_0454 Tresu_0454 496661 497278 + electron transport complex%2C RnfABCDGE type%2C E subunit COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE~InterPro IPR003667:IPR010968~KEGG: tde:TDE0835 electron transport complex RsxE subunit~PFAM: Electron transport complex%2C Rnf/Nqr~SPTR: Na(+)-translocating NADH-quinone reductase%2C D subunit%3B~TIGRFAM: Electron transport complex%2C RnfE~IMG reference gene:2504607366~PFAM: Rnf-Nqr subunit%2C membrane protein~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C E subunit gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0454 Tresu_0455 Tresu_0455 Tresu_0455 497275 497853 + RnfA-Nqr electron transport subunit COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA~InterPro IPR003667~KEGG: tde:TDE0834 Na(+)-translocating NADH-quinone reductase%2C E subunit~PFAM: Electron transport complex%2C Rnf/Nqr~SPTR: Na(+)-translocating NADH-quinone reductase subunit e (Na(+)-translocating nqr subunit e)%3B~IMG reference gene:2504607367~PFAM: Rnf-Nqr subunit%2C membrane protein~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C A subunit gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0455 Tresu_0456 Tresu_0456 Tresu_0456 497871 498692 + Fe-S cluster domain protein COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB~InterPro IPR007202:IPR001450~KEGG: tde:TDE1894 ferredoxin~PFAM: Putative Fe-S cluster%3B 4Fe-4S binding domain~SPTR: Iron-sulfur cluster-binding protein%3B~IMG reference gene:2504607368~PFAM: Putative Fe-S cluster%3B 4Fe-4S binding domain~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C B subunit gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0456 Tresu_0457 Tresu_0457 Tresu_0457 498720 498884 + hypothetical protein IMG reference gene:2504607369 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0457 Tresu_0458 Tresu_0458 Tresu_0458 498881 500374 + Na+/H+ antiporter NhaC COGs: COG1757 Na+/H+ antiporter~InterPro IPR018461~KEGG: fsu:Fisuc_0428 Na+/H+ antiporter NhaC-like protein~PFAM: Na+/H+ antiporter NhaC-like~SPTR: Na+/H+ antiporter NhaC-like protein%3B~IMG reference gene:2504607370~PFAM: Na+/H+ antiporter family gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0458 Tresu_0459 Tresu_0459 Tresu_0459 500542 501837 + uracil-xanthine permease COGs: COG2233 Xanthine/uracil permease~InterPro IPR006043:IPR006042~KEGG: ccu:Ccur_06450 uracil-xanthine permease~PFAM: Xanthine/uracil/vitamin C permease~SPTR: Uracil-xanthine permease%3B~TIGRFAM: Xanthine/uracil permease~IMG reference gene:2504607371~PFAM: Permease family~TIGRFAM: uracil-xanthine permease gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0459 Tresu_0460 Tresu_0460 Tresu_0460 501842 502477 + uracil phosphoribosyltransferase COGs: COG0035 Uracil phosphoribosyltransferase~InterPro IPR000836:IPR005765~KEGG: csh:Closa_1878 uracil phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~SPTR: Uracil phosphoribosyltransferase%3B~TIGRFAM: Uracil phosphoribosyl transferase~IMG reference gene:2504607372~PFAM: Phosphoribosyl transferase domain~TIGRFAM: uracil phosphoribosyltransferase gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0460 Tresu_0461 Tresu_0461 Tresu_0461 502568 504385 + alanyl-tRNA synthetase COGs: COG0013 Alanyl-tRNA synthetase~InterPro IPR018164:IPR012947:IPR002318~KEGG: ssm:Spirs_3146 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc%2C N-terminal%3B Threonyl/alanyl tRNA synthetase%2C SAD~SMART: Threonyl/alanyl tRNA synthetase%2C SAD~SPTR: Alanyl-tRNA synthetase%3B~TIGRFAM: Alanyl-tRNA synthetase%2C class IIc~IMG reference gene:2504607373~PFAM: Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetases class II (A)~TIGRFAM: alanine--tRNA ligase gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0461 Tresu_0462 Tresu_0462 Tresu_0462 504447 505526 + basic membrane protein KEGG: tpp:TPASS_1016 basic membrane protein~SPTR: Basic membrane protein%3B~IMG reference gene:2504607374~PFAM: SurA N-terminal domain gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0462 Tresu_0463 Tresu_0463 Tresu_0463 505536 506021 + NusB antitermination factor COGs: COG0781 Transcription termination factor~HAMAP: NusB antitermination factor~InterPro IPR006027:IPR011605~KEGG: tde:TDE1657 transcription antitermination protein NusB~PFAM: NusB/RsmB/TIM44~SPTR: N utilization substance protein B homolog%3B~TIGRFAM: NusB antitermination factor~IMG reference gene:2504607375~PFAM: NusB family~TIGRFAM: transcription antitermination factor NusB gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0463 Tresu_0464 Tresu_0464 Tresu_0464 506018 507880 + hypothetical protein InterPro IPR019734~KEGG: tde:TDE1656 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504607376 gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0464 Tresu_0465 Tresu_0465 Tresu_0465 508015 508287 + 10 kDa chaperonin COGs: COG0234 Co-chaperonin GroES (HSP10)~HAMAP: Chaperonin Cpn10~InterPro IPR020818~KEGG: tde:TDE0934 co-chaperonin GroES~PFAM: Chaperonin Cpn10~SMART: Chaperonin Cpn10~SPTR: 10 kDa chaperonin%3B~IMG reference gene:2504607377~PFAM: Chaperonin 10 Kd subunit gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0465 Tresu_0466 Tresu_0466 Tresu_0466 508539 509390 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284~KEGG: sta:STHERM_c04560 RNA polymerase sigma-70 factor family protein~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504607378~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0466 Tresu_0467 Tresu_0467 Tresu_0467 509371 511557 - ATP-dependent DNA helicase RecG COGs: COG1200 RecG-like helicase~InterPro IPR011545:IPR001650:IPR004609:IPR014001~KEGG: tde:TDE2579 ATP-dependent DNA helicase RecG~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: ATP-dependent DNA helicase RecG%3B~TIGRFAM: DNA helicase%2C ATP-dependent%2C RecG~IMG reference gene:2504607379~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent DNA helicase RecG gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0467 Tresu_0468 Tresu_0468 Tresu_0468 511558 512139 - protein of unknown function YGGT InterPro IPR003425~KEGG: ssm:Spirs_1326 protein of unknown function YGGT~PFAM: Uncharacterised protein family Ycf19~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607380~PFAM: YGGT family gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0468 Tresu_0469 Tresu_0469 Tresu_0469 512161 515802 - DNA polymerase III%2C alpha subunit COGs: COG0587 DNA polymerase III alpha subunit~InterProIPR004013:IPR011708:IPR004365:IPR004805:IPR 003141~KEGG: tde:TDE2786 DNA polymerase III subunit alpha~PFAM: Bacterial DNA polymerase III%2C alpha subunit%3B PHP%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: DNA-directed DNA polymerase~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: DNA polymerase III%2C alpha subunit%3B~TIGRFAM: DNA polymerase III%2C alpha subunit~IMG reference gene:2504607381~PFAM: Bacterial DNA polymerase III alpha subunit%3B PHP domain%3B OB-fold nucleic acid binding domain~TIGRFAM: DNA-directed DNA polymerase III (polc) gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0469 Tresu_0470 Tresu_0470 Tresu_0470 515942 516191 + pseudogene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0470 Tresu_0471 Tresu_0471 Tresu_0471 516243 518348 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607383~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0471 Tresu_0472 Tresu_0472 Tresu_0472 518419 519120 - Integrase catalytic region InterPro IPR001584~KEGG: cph:Cpha266_1645 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~IMG reference gene:2504607384~PFAM: Integrase core domain gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0472 Tresu_0473 Tresu_0473 Tresu_0473 519177 519725 + hypothetical protein IMG reference gene:2504607385 gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0473 Tresu_0474 Tresu_0474 Tresu_0474 519907 520029 + pseudogene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0474 Tresu_0475 Tresu_0475 Tresu_0475 520182 521345 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: tde:TDE2269 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607387~PFAM: Formylglycine-generating sulfatase enzyme gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0475 Tresu_0476 Tresu_0476 Tresu_0476 521375 523321 + S-layer domain-containing protein InterPro IPR001119~KEGG: dau:Daud_1714 S-layer domain-containing protein~PFAM: S-layer homology domain~SPTR: S-layer domain protein%3B~IMG reference gene:2504607388~PFAM: S-layer homology domain gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0476 Tresu_0477 Tresu_0477 Tresu_0477 523539 525245 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-d iaminopimelateligase COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase~HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-di aminopimelateligase~InterPro IPR000713:IPR013221:IPR004101:IPR005761~KEGG: tde:TDE0825 UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6- diaminopimelate ligase%2C putative~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal~PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C 6-diaminopimelateligase~SPTR: UDP-N-acetylmuramyl-tripeptide synthetase%3B~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6- diaminopimelateligase~IMG reference gene:2504607389~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0477 Tresu_0478 Tresu_0478 Tresu_0478 525242 526372 + D-alanine--D-alanine ligase COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein~HAMAP: D-alanine--D-alanine ligase~InterPro IPR011127:IPR011095:IPR005905~KEGG: tde:TDE2385 D-alanyl-alanine synthetase A~PFAM: D-alanine--D-alanine ligase%2C C-terminal%3B D-alanine--D-alanine ligase%2C N-terminal~PRIAM: D-alanine--D-alanine ligase~SPTR: D-alanine--D-alanine ligase%3B~TIGRFAM: D-alanine--D-alanine ligase~IMG reference gene:2504607390~PFAM: D-ala D-ala ligase N-terminus%3B D-ala D-ala ligase C-terminus~TIGRFAM: D-alanine--D-alanine ligase gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0478 Tresu_0479 Tresu_0479 Tresu_0479 526396 527991 + UDP-N-acetylmuramoylalanine/D-glutamate ligase COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase~InterPro IPR013221:IPR004101:IPR005762~KEGG: tde:TDE0370 UDP-N-acetylmuramoylalanine--D-glutamate ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal~PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase~SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B~TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase~IMG reference gene:2504607391~PFAM: Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0479 Tresu_0480 Tresu_0480 Tresu_0480 528492 528872 + hypothetical protein KEGG: ddc:Dd586_2170 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607392 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0480 Tresu_0481 Tresu_0481 Tresu_0481 528893 529606 + hypothetical protein IMG reference gene:2504607393 gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0481 Tresu_0482 Tresu_0482 Tresu_0482 529843 530688 - Phosphoribosylaminoimidazole-succinocarboxamides ynthase COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase~HAMAP: SAICAR synthetase~InterPro IPR001636~KEGG: eel:EUBELI_00451 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase~PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase~SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase%3B~TIGRFAM: SAICAR synthetase~IMG reference gene:2504607394~PFAM: SAICAR synthetase~TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0482 Tresu_0483 Tresu_0483 Tresu_0483 530752 531396 - formate/nitrite transporter COGs: COG2116 Formate/nitrite family of transporter~InterPro IPR000292~KEGG: fsu:Fisuc_2932 formate/nitrite transporter~PFAM: Formate/nitrite transporter~SPTR: Putative membrane protein%3B~manually curated~IMG reference gene:2504607395~PFAM: Formate/nitrite transporter gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0483 Tresu_0484 Tresu_0484 Tresu_0484 531583 533601 + 4-alpha-glucanotransferase COGs: COG1640 4-alpha-glucanotransferase~InterPro IPR003385~KEGG: fsu:Fisuc_0860 4-alpha-glucanotransferase~PFAM: Glycoside hydrolase%2C family 77~PRIAM: 4-alpha-glucanotransferase~SPTR: 4-alpha-glucanotransferase%3B~IMG reference gene:2504607396~PFAM: 4-alpha-glucanotransferase~TIGRFAM: 4-alpha-glucanotransferase gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0484 Tresu_0485 Tresu_0485 Tresu_0485 533629 537273 + alpha amylase catalytic region InterPro IPR006047:IPR006589~KEGG: tde:TDE2678 alpha-amylase family protein~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic domain~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain~SPTR: Alpha-amylase family protein%3B~IMG reference gene:2504607397~PFAM: Alpha amylase%2C catalytic domain gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0485 Tresu_0486 Tresu_0486 Tresu_0486 537239 538558 - Threonine synthase COGs: COG0498 Threonine synthase~InterPro IPR001926~KEGG: tde:TDE2676 threonine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Threonine synthase~SPTR: Threonine synthase%3B~IMG reference gene:2504607398~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: threonine synthase gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0486 Tresu_0487 Tresu_0487 Tresu_0487 538646 538864 - hypothetical protein IMG reference gene:2504607399 gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0487 Tresu_0488 Tresu_0488 Tresu_0488 538932 539579 + Imidazole glycerol phosphate synthase subunit hisH COGs: COG0118 Glutamine amidotransferase~HAMAP: Imidazole glycerol phosphate synthase%2C subunit H~InterPro IPR000991:IPR010139~KEGG: bpf:BpOF4_05370 imidazole glycerol phosphate synthase subunit HisH~PFAM: Glutamine amidotransferase class-I%2C C-terminal~SPTR: Imidazole glycerol phosphate synthase subunit hisH%3B~TIGRFAM: Imidazole glycerol phosphate synthase%2C subunit H~IMG reference gene:2504607400~PFAM: Glutamine amidotransferase class-I~TIGRFAM: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0488 Tresu_0489 Tresu_0489 Tresu_0489 539581 540348 + Imidazole glycerol phosphate synthase subunit hisF COGs: COG0107 Imidazoleglycerol-phosphate synthase~HAMAP: Histidine biosynthesis%2C HisF~InterPro IPR006062:IPR004651~KEGG: sta:STHERM_c15890 imidazoleglycerol phosphate synthase%2C cyclase subunit~PFAM: Histidine biosynthesis~SPTR: Imidazole glycerol phosphate synthase subunit hisF%3B~TIGRFAM: Histidine biosynthesis%2C HisF~IMG reference gene:2504607401~PFAM: Histidine biosynthesis protein~TIGRFAM: imidazoleglycerol phosphate synthase%2C cyclase subunit gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0489 Tresu_0490 Tresu_0490 Tresu_0490 540357 542156 - pyruvate kinase COGs: COG0469 Pyruvate kinase~InterPro IPR015793:IPR015795:IPR001697~KEGG: ssm:Spirs_0059 pyruvate kinase~PFAM: Pyruvate kinase%2C barrel%3B Pyruvate kinase%2C C-terminal-like~PRIAM: Pyruvate kinase~SPTR: Pyruvate kinase%3B~TIGRFAM: Pyruvate kinase~IMG reference gene:2504607402~PFAM: Pyruvate kinase%2C barrel domain%3B Pyruvate kinase%2C alpha/beta domain~TIGRFAM: pyruvate kinase gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0490 Tresu_0491 Tresu_0491 Tresu_0491 542176 542562 - queuosine biosynthesis protein QueD COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase~InterPro IPR007115~KEGG: sta:STHERM_c17560 putative 6-pyruvoyl tetrahydropterin synthase~PFAM: 6-pyruvoyl tetrahydropterin synthase-related~SPTR: Putative 6-pyruvoyl tetrahydropterin synthase%3B~TIGRFAM: queuosine biosynthesis protein QueD~IMG reference gene:2504607403~PFAM: 6-pyruvoyl tetrahydropterin synthase~TIGRFAM: queuosine biosynthesis protein QueD%3B 6-pyruvoyl tetrahydropterin synthase/QueD family protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0491 Tresu_0492 Tresu_0492 Tresu_0492 542758 543294 + pseudogene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0492 Tresu_0493 Tresu_0493 Tresu_0493 543351 543806 + hypothetical protein IMG reference gene:2504607405 gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0493 Tresu_0494 Tresu_0494 Tresu_0494 543855 544799 - N-acetyl-gamma-glutamyl-phosphate reductase COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase~InterPro IPR000534:IPR010136~KEGG: cce:Ccel_2910 N-acetyl-gamma-glutamyl-phosphate reductase~PFAM: Semialdehyde dehydrogenase%2C NAD-binding~PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase~SMART: Semialdehyde dehydrogenase%2C NAD-binding~SPTR: N-acetyl-gamma-glutamyl-phosphate reductase%3B~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase%2C type 2~IMG reference gene:2504607406~PFAM: Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase%2C uncommon form gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0494 Tresu_0495 Tresu_0495 Tresu_0495 544906 545316 + putative lipoprotein KEGG: tde:TDE2147 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504607407 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0495 Tresu_0496 Tresu_0496 Tresu_0496 545313 546599 - hypothetical protein KEGG: tde:TDE0194 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607408~PFAM: von Willebrand factor type A domain gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0496 Tresu_0497 Tresu_0497 Tresu_0497 546819 547916 + hypothetical protein KEGG: tde:TDE1725 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504607409 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0497 Tresu_0498 Tresu_0498 Tresu_0498 547945 548532 + helix-turn-helix domain protein InterPro IPR001387:IPR013096~KEGG: ckr:CKR_1206 hypothetical protein~PFAM: Helix-turn-helix type 3%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607410~PFAM: Cupin domain%3B Helix-turn-helix gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0498 Tresu_0499 Tresu_0499 Tresu_0499 549006 553580 + CoA-substrate-specific enzyme activase COGs: COG3581 conserved hypothetical protein~InterPro IPR002731:IPR018709:IPR008275~KEGG: tde:TDE1695 CoA-substrate-specific enzyme activase domain-containing protein~PFAM: Protein of unknown function DUF2229%2C CoA enzyme activase%3B ATPase%2C BadF/BadG/BcrA/BcrD type~SPTR: CoA-substrate-specific enzyme activase domain protein%3B~TIGRFAM: CoA enzyme activase~IMG reference gene:2504607411~PFAM: 2-hydroxyglutaryl-CoA dehydratase%2C D-component%3B BadF/BadG/BcrA/BcrD ATPase family%3B CoA enzyme activase uncharacterised domain (DUF2229)~TIGRFAM: CoA-substrate-specific enzyme activase%2C putative gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0499 Tresu_0500 Tresu_0500 Tresu_0500 553620 555005 + hypothetical protein KEGG: tde:TDE1533 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607412 gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0500 Tresu_0501 Tresu_0501 Tresu_0501 554992 557877 + hypothetical protein InterPro IPR019734~KEGG: ssm:Spirs_3206 TPR repeat-containing protein~SPTR: TPR repeat-containing protein%3B~IMG reference gene:2504607413 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0501 Tresu_0502 Tresu_0502 Tresu_0502 557896 559533 + hypothetical protein KEGG: ssm:Spirs_3205 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607414 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0502 Tresu_0503 Tresu_0503 Tresu_0503 559572 560186 + MotA/TolQ/ExbB proton channel COGs: COG0811 Biopolymer transport protein~InterPro IPR002898~KEGG: ssm:Spirs_3204 MotA/TolQ/ExbB proton channel~PFAM: MotA/TolQ/ExbB proton channel~SPTR: MotA/TolQ/ExbB proton channel%3B~IMG reference gene:2504607415~PFAM: MotA/TolQ/ExbB proton channel family gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0503 Tresu_0504 Tresu_0504 Tresu_0504 560188 560598 + Biopolymer transport protein ExbD/TolR COGs: COG0848 Biopolymer transport protein~InterPro IPR003400~KEGG: ssm:Spirs_3203 biopolymer transport protein ExbD/TolR~PFAM: Biopolymer transport protein ExbD/TolR~SPTR: Biopolymer transport protein ExbD/TolR%3B~IMG reference gene:2504607416~PFAM: Biopolymer transport protein ExbD/TolR gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0504 Tresu_0505 Tresu_0505 Tresu_0505 560595 561596 + hypothetical protein KEGG: tva:TVAG_254160 dentin sialophosphoprotein precursor~SPTR: Dentin sialophosphoprotein%2C putative%3B~IMG reference gene:2504607417 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0505 Tresu_0506 Tresu_0506 Tresu_0506 561620 562291 + Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: tde:TDE2294 HAD superfamily hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Phosphoglycolate phosphatase%3B~IMG reference gene:2504607418~PFAM: haloacid dehalogenase-like hydrolase gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0506 Tresu_0507 Tresu_0507 Tresu_0507 562333 567768 + hypothetical protein KEGG: sta:STHERM_c18710 putative cytoskeletal protein~SPTR: Putative cytoskeletal protein%3B~IMG reference gene:2504607419~PFAM: Apolipoprotein A1/A4/E domain gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0507 Tresu_0508 Tresu_0508 Tresu_0508 568385 568636 + hypothetical protein IMG reference gene:2504607420 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0508 Tresu_0509 Tresu_0509 Tresu_0509 568633 570144 + hypothetical protein IMG reference gene:2504607421 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0509 Tresu_0510 Tresu_0510 Tresu_0510 570174 570611 + hypothetical protein IMG reference gene:2504607422 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0510 Tresu_0511 Tresu_0511 Tresu_0511 570919 571389 - GCN5-related N-acetyltransferase COGs: COG5628 acetyltransferase~InterPro IPR000182~KEGG: ccb:Clocel_0267 acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607423 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0511 Tresu_0512 Tresu_0512 Tresu_0512 571409 571597 - pseudogene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0512 Tresu_0513 Tresu_0513 Tresu_0513 571830 573374 + type I restriction-modification system%2C M subunit COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356:IPR004546~KEGG: cst:CLOST_1970 type I restriction modification system protein hsdmi~PFAM: DNA methylase%2C adenine-specific~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C M subunit~IMG reference gene:2504607425~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain~TIGRFAM: type I restriction system adenine methylase (hsdM) gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0513 Tresu_0514 Tresu_0514 Tresu_0514 573484 574749 + putative ATP-binding protein KEGG: bfs:BF1100 putative ATP-binding protein~SPTR: Putative ATP-binding protein%3B~IMG reference gene:2504607426 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0514 Tresu_0515 Tresu_0515 Tresu_0515 574730 575356 + hypothetical protein KEGG: cju:C8J_1450 RloB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607427 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0515 Tresu_0516 Tresu_0516 Tresu_0516 575388 576722 + restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: lil:LA_3198 type I restriction enzyme EcoprrI specificity protein~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Restriction modification system DNA specificity domain protein%3B~IMG reference gene:2504607428~PFAM: Type I restriction modification DNA specificity domain gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0516 Tresu_0517 Tresu_0517 Tresu_0517 576760 577347 + restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: mct:MCR_1831 type I restriction modification DNA specificity protein~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607429~PFAM: Type I restriction modification DNA specificity domain gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0517 Tresu_0518 Tresu_0518 Tresu_0518 577535 578668 + anticodon nuclease prrc KEGG: pay:PAU_03969 anticodon nuclease prrc~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607430 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0518 Tresu_0519 Tresu_0519 Tresu_0519 578665 581760 + type I site-specific deoxyribonuclease%2C HsdR family COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR007409:IPR006935:IPR004473:IPR014001~KEGG: cst:CLOST_1968 type I site-specific deoxyribonuclease~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase%2C N-terminal~SPTR: Putative Type I site-specific deoxyribonuclease%3B~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~IMG reference gene:2504607431~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)%3B Type III restriction enzyme%2C res subunit%3B Type I restriction and modification enzyme - subunit R C terminal~TIGRFAM: type I site-specific deoxyribonuclease%2C HsdR family gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0519 Tresu_0520 Tresu_0520 Tresu_0520 581871 582343 - pseudogene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0520 Tresu_0521 Tresu_0521 Tresu_0521 582492 582929 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein COGs: COG3871 Uncharacterized stress protein (general stress protein 26)~InterPro IPR011576~KEGG: cpy:Cphy_2560 pyridoxamine 5'-phosphate oxidase-related FMN-binding~PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain~SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding%3B~IMG reference gene:2504607433~PFAM: Pyridoxamine 5'-phosphate oxidase gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0521 Tresu_0522 Tresu_0522 Tresu_0522 583150 583587 - hypothetical protein KEGG: tde:TDE2416 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607434 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0522 Tresu_0523 Tresu_0523 Tresu_0523 583602 584162 - shikimate kinase InterPro IPR000623~KEGG: clj:CLJU_c38140 hypothetical protein~PFAM: Shikimate kinase~SPTR: Shikimate kinase%3B~IMG reference gene:2504607435~PFAM: Shikimate kinase gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0523 Tresu_0524 Tresu_0524 Tresu_0524 584166 585302 - sodium ion-translocating decarboxylase%2C beta subunit COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit~InterPro IPR005661~KEGG: cth:Cthe_0509 sodium ion-translocating decarboxylase%2C beta subunit~PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~PRIAM: Glutaconyl-CoA decarboxylase~SPTR: Sodium ion-translocating decarboxylase%2C beta subunit%3B~TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~IMG reference gene:2504607436~PFAM: subunit~TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0524 Tresu_0525 Tresu_0525 Tresu_0525 585527 587413 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: tde:TDE0850 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607437~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0525 Tresu_0526 Tresu_0526 Tresu_0526 587750 587971 - pseudogene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0526 Tresu_0527 Tresu_0527 Tresu_0527 588250 588477 + hypothetical protein IMG reference gene:2504607439 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0527 Tresu_0528 Tresu_0528 Tresu_0528 588766 589017 + hypothetical protein KEGG: tde:TDE1846 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607440 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0528 Tresu_0529 Tresu_0529 Tresu_0529 589020 589397 + hypothetical protein KEGG: tde:TDE1845 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607441 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0529 Tresu_0530 Tresu_0530 Tresu_0530 589394 590713 + DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: nla:NLA_15070 C-5 cytosine-specific DNA-methylase~PFAM: C-5 cytosine methyltransferase~PRIAM: DNA (cytosine-5-)-methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607442~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0530 Tresu_0531 Tresu_0531 Tresu_0531 590706 592262 + ATPase associated with various cellular activities AAA_5 InterPro IPR011704~KEGG: cco:CCC13826_0822 polysulfide reductase chain C (sulfur reductase chain C)~PFAM: ATPase%2C AAA-5~SPTR: R1.LlaJI%3B~IMG reference gene:2504607443~PFAM: AAA domain (dynein-related subfamily) gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0531 Tresu_0532 Tresu_0532 Tresu_0532 592483 593868 + Restriction endonuclease%2C type II%2C LlaJI InterPro IPR018579~KEGG: eel:EUBELI_01791 hypothetical protein~PFAM: Restriction endonuclease%2C type II%2C LlaJI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607444~PFAM: LlaJI restriction endonuclease gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0532 Tresu_0533 Tresu_0533 Tresu_0533 594183 595397 + hypothetical protein IMG reference gene:2504607445 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0533 Tresu_0534 Tresu_0534 Tresu_0534 595404 595778 - hypothetical protein IMG reference gene:2504607446 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0534 Tresu_0535 Tresu_0535 Tresu_0535 595893 596161 + pseudogene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0535 Tresu_0536 Tresu_0536 Tresu_0536 596236 598533 + 3-isopropylmalate dehydratase COGs: COG1048 Aconitase A~InterPro IPR001030:IPR000573~KEGG: ere:EUBREC_0024 hypothetical protein~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel~PRIAM: 3-isopropylmalate dehydratase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607448~PFAM: Aconitase C-terminal domain%3B Aconitase family (aconitate hydratase) gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0536 Tresu_0537 Tresu_0537 Tresu_0537 598606 599106 + hypothetical protein KEGG: ssm:Spirs_2822 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607449 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0537 Tresu_0538 Tresu_0538 Tresu_0538 599238 599993 + hypothetical protein KEGG: ssm:Spirs_0399 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607450 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0538 Tresu_0539 Tresu_0539 Tresu_0539 600089 600304 + hypothetical protein IMG reference gene:2504607451 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0539 Tresu_0540 Tresu_0540 Tresu_0540 600600 601937 + DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: nmi:NMO_0571 putative type II DNA modification methylase~PFAM: C-5 cytosine methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607452~PFAM: C-5 cytosine-specific DNA methylase gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0540 Tresu_0541 Tresu_0541 Tresu_0541 601930 602832 - putative type II restriction endonuclease KEGG: nmi:NMO_0572 putative type II restriction endonuclease~SPTR: Putative type II restriction endonuclease%3B~IMG reference gene:2504607453~PFAM: ICEA Protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0541 Tresu_0542 Tresu_0542 Tresu_0542 602844 603059 - helix-turn-helix domain protein InterPro IPR001387~KEGG: mar:MAE_14980 transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%3B~IMG reference gene:2504607454~PFAM: Helix-turn-helix gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0542 Tresu_0543 Tresu_0543 Tresu_0543 603121 603267 + pseudogene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0543 Tresu_0544 Tresu_0544 Tresu_0544 603405 604616 + histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR011712:IPR003594~KEGG: dba:Dbac_2294 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain~SPTR: Histidine kinase%3B~IMG reference gene:2504607456~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0544 Tresu_0545 Tresu_0545 Tresu_0545 604620 605225 + two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: svi:Svir_33010 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SPTR: DNA-binding response regulator%3B~IMG reference gene:2504607457~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0545 Tresu_0546 Tresu_0546 Tresu_0546 605338 606588 - ATPase family protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: bpb:bpr_III123 archaeal ATPase family protein~SPTR: Predicted ATPase (AAA+ superfamily)%3B~IMG reference gene:2504607458 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0546 Tresu_0547 Tresu_0547 Tresu_0547 606781 607128 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504607459~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0547 Tresu_0548 Tresu_0548 Tresu_0548 607264 607692 + hypothetical protein IMG reference gene:2504607460 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0548 Tresu_0549 Tresu_0549 Tresu_0549 607694 608086 + glycerol-3-phosphate cytidylyltransferase COGs: COG0615 Cytidylyltransferase~InterPro IPR004820:IPR004821:IPR006409~KEGG: fsu:Fisuc_0969 glycerol-3-phosphate cytidylyltransferase~PFAM: Cytidylyltransferase~PRIAM: Glycerol-3-phosphate cytidylyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Glycerol-3-phosphate cytidylyltransferase%3B Cytidyltransferase-related~IMG reference gene:2504607461~PFAM: Cytidylyltransferase~TIGRFAM: glycerol-3-phosphate cytidylyltransferase%3B cytidyltransferase-related domain gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0549 Tresu_0550 Tresu_0550 Tresu_0550 608086 608934 + LicD family protein COGs: COG3475 LPS biosynthesis protein~InterPro IPR007074~KEGG: lbu:LBUL_1801 LPS biosynthesis protein~PFAM: LicD-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607462~PFAM: LICD Protein Family gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0550 Tresu_0551 Tresu_0551 Tresu_0551 608952 610433 + polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: snp:SPAP_1297 O-antigen and teichoic acid exporter membrane protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607463~PFAM: Polysaccharide biosynthesis protein gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0551 Tresu_0552 Tresu_0552 Tresu_0552 610426 611679 + CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase COGs: COG1887 Putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC~InterPro IPR007554~KEGG: gtn:GTNG_3260 putative glycerophosphotransferase~PFAM: CDP-glycerol glycerophosphotransferase~SPTR: Putative glycerol phosphotransferase%3B~IMG reference gene:2504607464~PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0552 Tresu_0553 Tresu_0553 Tresu_0553 611676 611768 + hypothetical protein IMG reference gene:2504607465 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0553 Tresu_0554 Tresu_0554 Tresu_0554 612002 613291 + hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: clo:HMPREF0868_0519 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607466 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0554 Tresu_0555 Tresu_0555 Tresu_0555 613536 614750 + hypothetical protein KEGG: ppn:Palpr_1291 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607467 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0555 Tresu_0556 Tresu_0556 Tresu_0556 614743 615663 + glycosyl transferase family 2 InterPro IPR001173~KEGG: eci:UTI89_C2306 putative rhamnosyltransferase~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative rhamnosyltransferase%3B~IMG reference gene:2504607468~PFAM: Glycosyl transferase family 2 gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0556 Tresu_0557 Tresu_0557 Tresu_0557 615660 616463 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: sbl:Sbal_2881 glycosyl transferase family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Beta-1%2C3-N-acetylglucosaminyltransferase%3B~IMG reference gene:2504607469~PFAM: Glycosyl transferase family 2 gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0557 Tresu_0558 Tresu_0558 Tresu_0558 617024 617713 + pseudogene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0558 Tresu_0559 Tresu_0559 Tresu_0559 617760 618413 + pseudogene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0559 Tresu_0560 Tresu_0560 Tresu_0560 618524 619048 + hypothetical protein IMG reference gene:2504607472 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0560 Tresu_0561 Tresu_0561 Tresu_0561 619224 620471 + protein of unknown function DUF262 InterPro IPR004919~KEGG: smb:smi_0898 hypothetical protein~PFAM: Domain of unknown function DUF262~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607473~PFAM: Protein of unknown function DUF262 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0561 Tresu_0562 Tresu_0562 Tresu_0562 620478 621233 + hypothetical protein KEGG: smb:smi_0900 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607474 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0562 Tresu_0563 Tresu_0563 Tresu_0563 621459 622657 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: PUTATIVE TRANSPOSASE%3B~manually curated~IMG reference gene:2504607475~PFAM: Transposase%3B Integrase core domain gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0563 Tresu_0564 Tresu_0564 Tresu_0564 622743 623189 + hypothetical protein KEGG: tde:TDE1822 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607476 gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0564 Tresu_0565 Tresu_0565 Tresu_0565 623293 624192 + hypothetical protein IMG reference gene:2504607477 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0565 Tresu_0566 Tresu_0566 Tresu_0566 624146 624316 + hypothetical protein IMG reference gene:2504607478 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0566 Tresu_0567 Tresu_0567 Tresu_0567 624504 625775 + hypothetical protein KEGG: pru:PRU_1731 hypothetical protein~SPTR: Putative RloA%3B~IMG reference gene:2504607479 gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0567 Tresu_0568 Tresu_0568 Tresu_0568 625777 626334 + hypothetical protein KEGG: bvu:BVU_0723 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607480 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0568 Tresu_0569 Tresu_0569 Tresu_0569 626359 626961 - pseudogene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0569 Tresu_0570 Tresu_0570 Tresu_0570 627174 630221 - type III restriction protein res subunit COGs: COG4951 conserved hypothetical protein~InterPro IPR002755:IPR006935:IPR014001~KEGG: ckr:CKR_2267 hypothetical protein~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B DNA primase%2C small subunit~SMART: DEAD-like helicase%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607482~PFAM: Type III restriction enzyme%2C res subunit gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0570 Tresu_0571 Tresu_0571 Tresu_0571 630745 631029 + hypothetical protein KEGG: glo:Glov_2220 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607483 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0571 Tresu_0572 Tresu_0572 Tresu_0572 631072 632016 - hypothetical protein IMG reference gene:2504607484 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0572 Tresu_0573 Tresu_0573 Tresu_0573 632043 632690 - hypothetical protein IMG reference gene:2504607485 gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0573 Tresu_0574 Tresu_0574 Tresu_0574 632840 633115 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE0440 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504607486~PFAM: Helix-turn-helix gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0574 Tresu_0575 Tresu_0575 Tresu_0575 633122 634390 - hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: pru:PRU_0323 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607487 gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0575 Tresu_0576 Tresu_0576 Tresu_0576 634565 635005 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: ssb:SSUBM407_1359 acetyltransferase (GNAT) family protein~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Acetyltransferase (GNAT) family protein%3B~IMG reference gene:2504607488 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0576 Tresu_0577 Tresu_0577 Tresu_0577 635106 635981 + Radical SAM domain protein COGs: COG1533 DNA repair photolyase~InterPro IPR007197~KEGG: cpy:Cphy_0183 radical SAM domain-containing protein~PFAM: Radical SAM~SPTR: DNA repair photolyase%3B~IMG reference gene:2504607489 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0577 Tresu_0578 Tresu_0578 Tresu_0578 636086 636463 + CrcB-like protein COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation~HAMAP: Camphor resistance CrcB protein~InterPro IPR003691~KEGG: lba:Lebu_0217 CrcB protein~PFAM: Camphor resistance CrcB protein~SPTR: Protein CrcB homolog%3B~TIGRFAM: Camphor resistance CrcB protein~IMG reference gene:2504607490~PFAM: CrcB-like protein~TIGRFAM: crcB protein gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0578 Tresu_0579 Tresu_0579 Tresu_0579 636838 637416 + MgtE intracellular region COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)~InterPro IPR006668:IPR000644~KEGG: bpb:bpr_I0137 magnesium transporter MgtE~PFAM: Magnesium transporter%2C MgtE intracellular domain%3B Cystathionine beta-synthase%2C core~SMART: Magnesium transporter%2C MgtE intracellular domain%3B Cystathionine beta-synthase%2C core~SPTR: Mg2+ transporter (MgtE)%3B~IMG reference gene:2504607491~PFAM: MgtE intracellular N domain%3B CBS domain gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0579 Tresu_0580 Tresu_0580 Tresu_0580 637543 637767 + hypothetical protein KEGG: bvu:BVU_3764 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607492 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0580 Tresu_0581 Tresu_0581 Tresu_0581 637814 638032 + hypothetical protein KEGG: pmz:HMPREF0659_A6232 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607493 gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0581 Tresu_0582 Tresu_0582 Tresu_0582 638029 638241 + XRE family transcriptional regulator KEGG: dly:Dehly_1177 XRE family transcriptional regulator~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607494 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0582 Tresu_0583 Tresu_0583 Tresu_0583 638245 640797 + Type I site-specific deoxyribonuclease COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR007409:IPR006935:IPR013670:IPR014001~KEGG: sku:Sulku_0774 type I site-specific deoxyribonuclease~PFAM: Restriction endonuclease%2C type I%2C EcoEI%2C R subunit/Type III%2C Res subunit%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase%2C N-terminal~SPTR: Type I site-specific restriction-modification system%2C R (Restriction) subunit and related helicases%3B~IMG reference gene:2504607495~PFAM: Type III restriction enzyme%2C res subunit%3B EcoEI R protein C-terminal gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0583 Tresu_0584 Tresu_0584 Tresu_0584 640798 641601 + restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: eok:G2583_5148 putative type I restriction-modification system%2C S subunit~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative type I restriction-modification system%2C S subunit%3B~IMG reference gene:2504607496~PFAM: Type I restriction modification DNA specificity domain gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0584 Tresu_0585 Tresu_0585 Tresu_0585 641659 643161 + N-6 DNA methylase COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: apa:APP7_1530 type I restriction-modification system%2C M subunit~PFAM: DNA methylase%2C adenine-specific~SPTR: Type I restriction-modification system methyltransferase subunit%3B~IMG reference gene:2504607497~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0585 Tresu_0586 Tresu_0586 Tresu_0586 643161 644216 + filamentation induced by cAMP protein Fic COGs: COG3177 conserved hypothetical protein~InterPro IPR003812~KEGG: tde:TDE2745 fic family protein~PFAM: Filamentation induced by cAMP/death on curing-related~SPTR: Fic family protein%3B~IMG reference gene:2504607498~PFAM: IclR helix-turn-helix domain%3B Fic/DOC family gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0586 Tresu_0587 Tresu_0587 Tresu_0587 644287 644481 + hypothetical protein IMG reference gene:2504607499 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0587 Tresu_0588 Tresu_0588 Tresu_0588 644613 645197 + hypothetical protein IMG reference gene:2504607500 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0588 Tresu_0589 Tresu_0589 Tresu_0589 645194 646675 + restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: hmo:HM1_0633 type I restriction modification DNA specificity domain~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607501~PFAM: Type I restriction modification DNA specificity domain gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0589 Tresu_0590 Tresu_0590 Tresu_0590 646705 647337 + hypothetical protein KEGG: fps:FP0855 putative two-component system response regulatory protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607502 gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0590 Tresu_0591 Tresu_0591 Tresu_0591 647334 648365 + hypothetical protein KEGG: fps:FP0856 putative two-component system sensor histidine kinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607503~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0591 Tresu_0592 Tresu_0592 Tresu_0592 648385 649311 + hypothetical protein IMG reference gene:2504607504 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0592 Tresu_0593 Tresu_0593 Tresu_0593 649308 649955 + hypothetical protein COGs: COG3943 Virulence protein~KEGG: lby:Lbys_1357 hypothetical protein~SPTR: Putative DNA-binding protein%3B~IMG reference gene:2504607505 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0593 Tresu_0594 Tresu_0594 Tresu_0594 649957 651408 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: afn:Acfer_0677 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504607506~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0594 Tresu_0595 Tresu_0595 Tresu_0595 651491 652876 - pyridoxal-phosphate dependent TrpB-like enzyme COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB)~InterPro IPR001926:IPR006316~KEGG: bpb:bpr_I1140 tryptophan synthase beta subunit TrpB2~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Tryptophan synthase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Tryptophan synthase%2C beta chain-like~IMG reference gene:2504607507~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0595 Tresu_0596 Tresu_0596 Tresu_0596 653147 653680 + nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: fnu:FN1223 dihydropteridine reductase~PFAM: Nitroreductase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607508~PFAM: Nitroreductase family gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0596 Tresu_0597 Tresu_0597 Tresu_0597 653745 654251 - hypothetical protein KEGG: mla:Mlab_0585 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607509 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0597 Tresu_0598 Tresu_0598 Tresu_0598 654275 654898 - regulatory protein TetR InterPro IPR001647~KEGG: cpy:Cphy_1864 TetR family transcriptional regulator~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2504607510~PFAM: Bacterial regulatory proteins%2C tetR family gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0598 Tresu_0599 Tresu_0599 Tresu_0599 655149 655274 + hypothetical protein IMG reference gene:2504607511 gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0599 Tresu_0600 Tresu_0600 Tresu_0600 655371 655811 - GCN5-related N-acetyltransferase COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein~InterPro IPR000182~KEGG: bde:BDP_1367 acetyltransferase (GNAT) family~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607512~PFAM: Acetyltransferase (GNAT) family gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0600 Tresu_0601 Tresu_0601 Tresu_0601 656044 656550 + DNA glycosylase COGs: COG3663 G:T/U mismatch-specific DNA glycosylase~KEGG: eel:EUBELI_00700 DNA glycosylase~SPTR: DNA glycosylase%3B~IMG reference gene:2504607513~PFAM: Uracil DNA glycosylase superfamily gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0601 Tresu_0602 Tresu_0602 Tresu_0602 656644 659310 + leucyl-tRNA synthetase COGs: COG0495 Leucyl-tRNA synthetase~InterPro IPR015413:IPR013155:IPR002302~KEGG: tde:TDE2339 leucyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding~PRIAM: Leucine--tRNA ligase~SPTR: Leucyl-tRNA synthetase%3B~TIGRFAM: Leucyl-tRNA synthetase%2C class Ia%2C bacterial/mitochondrial~IMG reference gene:2504607514~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: leucyl-tRNA synthetase%2C eubacterial and mitochondrial family gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0602 Tresu_0603 Tresu_0603 Tresu_0603 659311 660243 + cation diffusion facilitator family transporter COGs: COG0053 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: tde:TDE0634 cation efflux family protein~PFAM: Cation efflux protein~SPTR: Cation efflux family protein%3B~TIGRFAM: Cation efflux protein~IMG reference gene:2504607515~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0603 Tresu_0604 Tresu_0604 Tresu_0604 660408 661403 - dihydrouridine synthase DuS COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269~KEGG: tde:TDE0122 dihydrouridine synthase%2C putative~PFAM: tRNA-dihydrouridine synthase~SPTR: tRNA-dihydrouridine synthase%3B~IMG reference gene:2504607516~PFAM: Dihydrouridine synthase (Dus) gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0604 Tresu_0605 Tresu_0605 Tresu_0605 661400 661903 - C_GCAxxG_C_C family protein InterPro IPR010181~KEGG: cth:Cthe_1399 C_GCAxxG_C_C family protein~PFAM: CGCAxxGCC motif~SPTR: C_GCAxxG_C_C family protein%3B~TIGRFAM: CGCAxxGCC motif~IMG reference gene:2504607517~PFAM: Putative redox-active protein (C_GCAxxG_C_C)~TIGRFAM: C_GCAxxG_C_C family probable redox protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0605 Tresu_0606 Tresu_0606 Tresu_0606 661900 662739 - ATPase-like%2C ParA/MinD COGs: COG0489 ATPase involved in chromosome partitioning~InterPro IPR019591~KEGG: dsy:DSY3438 hypothetical protein~PFAM: ATPase-like%2C ParA/MinD~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607518~PFAM: ParA/MinD ATPase like gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0606 Tresu_0607 Tresu_0607 Tresu_0607 663094 664221 + glycosyl transferase family 4 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR000715~KEGG: lwe:lwe2467 glycosyl transferase%2C group 4 family protein~PFAM: Glycosyl transferase%2C family 4~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607519~PFAM: Glycosyl transferase family 4 gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0607 Tresu_0608 Tresu_0608 Tresu_0608 664490 666319 + Arginyl-tRNA synthetase COGs: COG0018 Arginyl-tRNA synthetase~HAMAP: Arginyl-tRNA synthetase%2C class Ic~InterPro IPR005148:IPR015945:IPR008909:IPR001278~KEGG: tde:TDE0971 arginyl-tRNA synthetase~PFAM: DALR anticodon binding%3B Arginyl-tRNA synthetase%2C class Ic%2C core%3B Arginyl tRNA synthetase%2C class Ic%2C N-terminal~PRIAM: Arginine--tRNA ligase~SMART: DALR anticodon binding~SPTR: Arginyl-tRNA synthetase%3B~TIGRFAM: Arginyl-tRNA synthetase%2C class Ic~IMG reference gene:2504607520~PFAM: DALR anticodon binding domain%3B Arginyl tRNA synthetase N terminal domain%3B tRNA synthetases class I (R)~TIGRFAM: arginyl-tRNA synthetase gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0608 Tresu_0609 Tresu_0609 Tresu_0609 666721 668085 + Citrate synthase COGs: COG0372 Citrate synthase~InterPro IPR002020~KEGG: sta:STHERM_c11610 hypothetical protein~PFAM: Citrate synthase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607521~PFAM: Citrate synthase gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0609 Tresu_0610 Tresu_0610 Tresu_0610 668173 668832 + Protein grpE COGs: COG0576 Molecular chaperone GrpE (heat shock protein)~HAMAP: GrpE nucleotide exchange factor~InterPro IPR000740~KEGG: tde:TDE0627 co-chaperone protein GrpE~PFAM: GrpE nucleotide exchange factor~SPTR: Protein grpE%3B~IMG reference gene:2504607522~PFAM: GrpE gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0610 Tresu_0611 Tresu_0611 Tresu_0611 668878 670827 + Chaperone protein dnaK COGs: COG0443 Molecular chaperone~HAMAP: Chaperone DnaK~InterPro IPR013126:IPR012725~KEGG: tde:TDE0628 molecular chaperone DnaK~PFAM: Heat shock protein 70~SPTR: Chaperone protein dnaK%3B~TIGRFAM: Chaperone DnaK~IMG reference gene:2504607523~PFAM: Hsp70 protein~TIGRFAM: chaperone protein DnaK gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0611 Tresu_0612 Tresu_0612 Tresu_0612 670905 672053 + Chaperone protein dnaJ COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~HAMAP: Chaperone DnaJ~InterPro IPR001623:IPR001305:IPR002939:IPR012724~KEGG: tde:TDE0629 chaperone protein DnaJ~PFAM: Chaperone DnaJ%2C C-terminal%3B Heat shock protein DnaJ%2C N-terminal%3B Heat shock protein DnaJ%2C cysteine-rich domain~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: Chaperone protein dnaJ%3B~TIGRFAM: Chaperone DnaJ~IMG reference gene:2504607524~PFAM: DnaJ domain%3B DnaJ C terminal region%3B DnaJ central domain (4 repeats)~TIGRFAM: chaperone protein DnaJ gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0612 Tresu_0613 Tresu_0613 Tresu_0613 672187 673587 + protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR010822:IPR001932~KEGG: tde:TDE0630 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-like~SPTR: Sigma factor regulatory protein%2C putative%3B~IMG reference gene:2504607525~PFAM: Stage II sporulation protein E (SpoIIE) gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0613 Tresu_0614 Tresu_0614 Tresu_0614 673591 675843 + protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR010822:IPR001932~KEGG: tde:TDE0631 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-like~SPTR: Sigma factor regulatory protein%2C putative%3B~IMG reference gene:2504607526~PFAM: Stage II sporulation protein E (SpoIIE) gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0614 Tresu_0615 Tresu_0615 Tresu_0615 675878 676210 + anti-anti-sigma factor InterPro IPR002645:IPR003658~KEGG: tde:TDE0632 anti-anti-sigma factor~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~TIGRFAM: Anti-sigma factor antagonist~IMG reference gene:2504607527~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0615 Tresu_0616 Tresu_0616 Tresu_0616 676203 677033 + peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin COGs: COG1876 D-alanyl-D-alanine carboxypeptidase~InterPro IPR003709~KEGG: tde:TDE0633 D-alanyl-D-alanine carboxypeptidase%2C putative~PFAM: Peptidase M15B/M15C%2C D%2CD-carboxypeptidase VanY/endolysins~SPTR: Peptidase M15B and M15C%2C D%2CD-carboxypeptidase VanY/endolysins%3B~IMG reference gene:2504607528~PFAM: D-alanyl-D-alanine carboxypeptidase gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0616 Tresu_0617 Tresu_0617 Tresu_0617 677030 677641 - Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: ssm:Spirs_1365 HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B~IMG reference gene:2504607529~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0617 Tresu_0618 Tresu_0618 Tresu_0618 677658 678299 - Haloacid dehalogenase domain protein hydrolase COGs: COG0546 phosphatase~InterPro IPR005834~KEGG: clj:CLJU_c17780 putative phosphatase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Putative phosphatase%3B~IMG reference gene:2504607530~PFAM: haloacid dehalogenase-like hydrolase gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0618 Tresu_0619 Tresu_0619 Tresu_0619 678500 679834 + extracellular solute-binding protein KEGG: cpy:Cphy_2466 extracellular solute-binding protein~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504607531 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0619 Tresu_0620 Tresu_0620 Tresu_0620 679995 680972 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: eel:EUBELI_20529 multiple sugar transport system permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607532~PFAM: Binding-protein-dependent transport system inner membrane component gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0620 Tresu_0621 Tresu_0621 Tresu_0621 680984 681895 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cpy:Cphy_2464 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar ABC transporter permease%3B~IMG reference gene:2504607533~PFAM: Binding-protein-dependent transport system inner membrane component gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0621 Tresu_0622 Tresu_0622 Tresu_0622 682033 684102 + ATP-dependent metalloprotease FtsH COGs: COG0465 ATP-dependent Zn protease~InterProIPR011546:IPR003959:IPR000642:IPR005936:IPR 003593~KEGG: tde:TDE0470 cell division protein FtsH~PFAM: Peptidase M41%3B ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular~PRIAM: Microtubule-severing ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Cell division protease FtsH homolog%3B~TIGRFAM: Peptidase M41%2C FtsH~IMG reference gene:2504607534~PFAM: FtsH Extracellular%3B Peptidase family M41%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent metalloprotease FtsH gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0622 Tresu_0623 Tresu_0623 Tresu_0623 684311 684976 - beta-lactamase domain protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~InterPro IPR001279~KEGG: tde:TDE2403 metallo-beta-lactamase family protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504607535~PFAM: Metallo-beta-lactamase superfamily gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0623 Tresu_0624 Tresu_0624 Tresu_0624 684973 685833 - DbpA RNA-binding domain protein InterPro IPR005580~KEGG: tde:TDE2592 DbpA RNA-binding domain-containing protein~PFAM: DbpA%2C RNA-binding~SPTR: DbpA RNA binding domain protein%3B~IMG reference gene:2504607536~PFAM: DbpA RNA binding domain gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0624 Tresu_0625 Tresu_0625 Tresu_0625 685904 686833 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: sta:STHERM_c02740 hypothetical protein~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607537~PFAM: Acetyltransferase (GNAT) family%3B Uncharacterised protein family (UPF0158) gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0625 Tresu_0626 Tresu_0626 Tresu_0626 686844 687494 - ATP-dependent Clp protease proteolytic subunit COGs: COG0740 Protease subunit of ATP-dependent Clp protease~HAMAP: Peptidase S14%2C ClpP~InterPro IPR001907~KEGG: tde:TDE2388 ATP-dependent Clp protease proteolytic subunit~PFAM: Peptidase S14%2C ClpP~PRIAM: Endopeptidase Clp~SPTR: ATP-dependent Clp protease proteolytic subunit 2%3B~IMG reference gene:2504607538~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0626 Tresu_0627 Tresu_0627 Tresu_0627 687732 688568 - MazG family protein COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain~InterPro IPR004518:IPR011551~KEGG: tde:TDE2286 MazG family protein~PFAM: NTP pyrophosphohydrolase MazG%2C putative catalytic core~SPTR: MazG family protein%3B~TIGRFAM: NTP pyrophosphohydrolase MazG%2C bacterial~IMG reference gene:2504607539~PFAM: MazG nucleotide pyrophosphohydrolase domain~TIGRFAM: MazG family protein gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0627 Tresu_0628 Tresu_0628 Tresu_0628 688582 689244 - Peptidyl-tRNA hydrolase COGs: COG0193 Peptidyl-tRNA hydrolase~HAMAP: Peptidyl-tRNA hydrolase~InterPro IPR001328~KEGG: tde:TDE0643 peptidyl-tRNA hydrolase~PFAM: Peptidyl-tRNA hydrolase~PRIAM: Aminoacyl-tRNA hydrolase~SPTR: Peptidyl-tRNA hydrolase%3B~TIGRFAM: Peptidyl-tRNA hydrolase~IMG reference gene:2504607540~PFAM: Peptidyl-tRNA hydrolase~TIGRFAM: peptidyl-tRNA hydrolase gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0628 Tresu_0629 Tresu_0629 Tresu_0629 689314 690030 - transcriptional regulator%2C AraC family COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain~InterPro IPR000005:IPR018060~KEGG: eel:EUBELI_01711 two-component system%2C response regulator YesN~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: Two-component system%2C response regulator YesN%3B~IMG reference gene:2504607541~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0629 Tresu_0630 Tresu_0630 Tresu_0630 690027 691067 - hypothetical protein KEGG: bcl:ABC3321 metal-dependent phosphohydrolase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607542 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0630 Tresu_0631 Tresu_0631 Tresu_0631 691124 692335 - cobalamin synthesis protein P47K COGs: COG0523 Putative GTPase (G3E family)~InterPro IPR003495:IPR011629~KEGG: pmz:HMPREF0659_A5888 CobW/P47K family protein~PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like%3B Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal~SMART: Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal~SPTR: Cobalamin synthesis protein/P47K family protein%3B~IMG reference gene:2504607543~PFAM: CobW/HypB/UreG%2C nucleotide-binding domain%3B Cobalamin synthesis protein cobW C-terminal domain gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0631 Tresu_0632 Tresu_0632 Tresu_0632 692632 694692 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607544~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0632 Tresu_0633 Tresu_0633 Tresu_0633 694916 697795 + hypothetical protein KEGG: tde:TDE0086 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607545 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0633 Tresu_0634 Tresu_0634 Tresu_0634 697792 701589 + UvrD/REP helicase COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)~InterPro IPR000212~KEGG: tde:TDE0085 ATP-dependent DNA helicase UvrD~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase%2C UvrD/Rep family%3B~IMG reference gene:2504607546~PFAM: UvrD/REP helicase gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0634 Tresu_0635 Tresu_0635 Tresu_0635 701593 702339 - acyl-ACP thioesterase COGs: COG3884 Acyl-ACP thioesterase~InterPro IPR002864~KEGG: gym:GYMC10_0920 acyl-ACP thioesterase~PFAM: Acyl-ACP thioesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607547~PFAM: Acyl-ACP thioesterase gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0635 Tresu_0636 Tresu_0636 Tresu_0636 702608 703720 + hypothetical protein KEGG: tpp:TPASS_1001 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607548 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0636 Tresu_0637 Tresu_0637 Tresu_0637 703734 704441 - DTW domain containing protein COGs: COG3148 conserved hypothetical protein~InterPro IPR005636~KEGG: ant:Arnit_1979 DTW domain containing protein~PFAM: DTW~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607549~PFAM: DTW domain gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0637 Tresu_0638 Tresu_0638 Tresu_0638 704527 704739 - 30S ribosomal protein S21 HAMAP: Ribosomal protein S21~InterPro IPR001911~KEGG: tde:TDE2473 30S ribosomal protein S21~PFAM: Ribosomal protein S21~SPTR: 30S ribosomal protein S21%3B~TIGRFAM: Ribosomal protein S21~IMG reference gene:2504607550~PFAM: Ribosomal protein S21~TIGRFAM: ribosomal protein S21 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0638 Tresu_0639 Tresu_0639 Tresu_0639 704853 706367 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterPro IPR005844:IPR005845~KEGG: cyt:cce_4682 putative phosphoglucomutases~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II~SPTR: Phosphoglucomutase/phosphomannomutase family protein%3B~IMG reference gene:2504607551~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0639 Tresu_0640 Tresu_0640 Tresu_0640 706442 707230 - NAD(+) diphosphatase COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding~InterPro IPR015376:IPR000086~KEGG: pmy:Pmen_2071 NADH pyrophosphatase~PFAM: NUDIX hydrolase domain%3B Zinc ribbon%2C NADH pyrophosphatase~PRIAM: NAD(+) diphosphatase~SPTR: NADH pyrophosphatase%3B~IMG reference gene:2504607552~PFAM: NUDIX domain gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0640 Tresu_0641 Tresu_0641 Tresu_0641 707365 708135 - hypothetical protein KEGG: tde:TDE2734 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607553 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0641 Tresu_0642 Tresu_0642 Tresu_0642 708342 709073 - protein of unknown function DUF955 COGs: COG2856 Zn peptidase~InterPro IPR010359~KEGG: saj:SaurJH9_0852 hypothetical protein~PFAM: Protein of unknown function DUF955~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607554~PFAM: Domain of unknown function (DUF955) gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0642 Tresu_0643 Tresu_0643 Tresu_0643 709073 709405 - helix-turn-helix domain protein InterPro IPR001387~KEGG: aoe:Clos_1853 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607555~PFAM: Helix-turn-helix gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0643 Tresu_0644 Tresu_0644 Tresu_0644 709793 710125 - transcriptional regulator%2C XRE family KEGG: ssm:Spirs_2166 transcriptional regulator%2C XRE family~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504607556~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0644 Tresu_0645 Tresu_0645 Tresu_0645 710242 711804 + DNA methylase N-4/N-6 domain protein COGs: COG2189 Adenine specific DNA methylase Mod~InterPro IPR002941~KEGG: ngk:NGK_1384 putative type III restriction-modification system methyltransferase~PFAM: DNA methylase N-4/N-6~SPTR: Putative type III restriction-modification system methyltransferase%3B~IMG reference gene:2504607557~PFAM: DNA methylase gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0645 Tresu_0646 Tresu_0646 Tresu_0646 711877 713874 + type III restriction protein res subunit InterPro IPR006935~KEGG: hac:Hac_0712 hypothetical protein~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607558~PFAM: Type III restriction enzyme%2C res subunit gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0646 Tresu_0647 Tresu_0647 Tresu_0647 713970 714755 + transposase IS116/IS110/IS902 family protein InterPro IPR003346~KEGG: bpb:bpr_IV010 IS110 family transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: Transposase IS110 family%3B~IMG reference gene:2504607559~PFAM: Transposase IS116/IS110/IS902 family gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0647 Tresu_0648 Tresu_0648 Tresu_0648 715130 715660 + hypothetical protein KEGG: abb:ABBFA_002533 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607560 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0648 Tresu_0649 Tresu_0649 Tresu_0649 716056 717288 + integron integrase COGs: COG4974 Site-specific recombinase XerD~InterPro IPR011946:IPR002104~KEGG: cph:Cpha266_0257 integron integrase~PFAM: Integrase%2C catalytic core%2C phage~SPTR: Integron integrase%3B~TIGRFAM: Integrase%2C integron-type~IMG reference gene:2504607561~PFAM: Phage integrase family~TIGRFAM: integron integrase gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0649 Tresu_0650 Tresu_0650 Tresu_0650 717469 718260 + hypothetical protein IMG reference gene:2504607562 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0650 Tresu_0651 Tresu_0651 Tresu_0651 718367 719077 + hypothetical protein KEGG: pat:Patl_2626 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607563 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0651 Tresu_0652 Tresu_0652 Tresu_0652 719181 719978 + hypothetical protein IMG reference gene:2504607564 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0652 Tresu_0653 Tresu_0653 Tresu_0653 720083 720724 + hypothetical protein IMG reference gene:2504607565 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0653 Tresu_0654 Tresu_0654 Tresu_0654 720922 721434 + NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR000086~KEGG: cpf:CPF_0794 NUDIX family hydrolase~PFAM: NUDIX hydrolase domain~SPTR: ADP-ribose pyrophosphatase%3B~IMG reference gene:2504607566~PFAM: NUDIX domain gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0654 Tresu_0655 Tresu_0655 Tresu_0655 721505 721792 + protein of unknown function DUF497 COGs: COG2929 conserved hypothetical protein~InterPro IPR007460~KEGG: cbd:CBUD_0131 hypothetical cytosolic protein~PFAM: Protein of unknown function DUF497~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607567~PFAM: Protein of unknown function (DUF497) gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0655 Tresu_0656 Tresu_0656 Tresu_0656 721794 722006 + hypothetical protein KEGG: nhl:Nhal_1268 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607568 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0656 Tresu_0657 Tresu_0657 Tresu_0657 722118 722921 + hypothetical protein IMG reference gene:2504607569 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0657 Tresu_0658 Tresu_0658 Tresu_0658 723390 723809 + hypothetical protein IMG reference gene:2504607570 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0658 Tresu_0659 Tresu_0659 Tresu_0659 724052 724294 + hypothetical protein IMG reference gene:2504607571 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0659 Tresu_0660 Tresu_0660 Tresu_0660 724316 725134 + hypothetical protein IMG reference gene:2504607572 gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0660 Tresu_0661 Tresu_0661 Tresu_0661 725323 726444 + SH3 type 3 domain protein InterPro IPR013247~KEGG: tde:TDE0546 hypothetical protein~PFAM: SH3%2C type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607573 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0661 Tresu_0662 Tresu_0662 Tresu_0662 726617 726952 + TM2 domain containing protein InterPro IPR007829~KEGG: coc:Coch_1399 TM2 domain containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607574~PFAM: TM2 domain gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0662 Tresu_0663 Tresu_0663 Tresu_0663 727017 727277 + hypothetical protein KEGG: cob:COB47_0151 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607575~PFAM: Protein of unknown function (DUF2752) gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0663 Tresu_0664 Tresu_0664 Tresu_0664 727354 727581 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607576~PFAM: Protein of unknown function (DUF2281) gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0664 Tresu_0665 Tresu_0665 Tresu_0665 727578 727955 + PilT protein domain protein COGs: COG3744 conserved hypothetical protein~InterPro IPR002716~KEGG: tde:TDE0671 PilT domain-containing protein~PFAM: PilT protein%2C N-terminal~SPTR: PIN domain protein%3B~IMG reference gene:2504607577~PFAM: PIN domain gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0665 Tresu_0666 Tresu_0666 Tresu_0666 728461 728835 - hypothetical protein KEGG: bfs:BF2786 hypothetical protein~SPTR: DNA-binding protein%2C histone-like%2C putative%3B~IMG reference gene:2504607578~PFAM: Bacterial DNA-binding protein~TIGRFAM: DNA-binding protein%2C histone-like%2C putative gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0666 Tresu_0667 Tresu_0667 Tresu_0667 729195 729416 + hypothetical protein KEGG: hmo:HM1_0624 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607579 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0667 Tresu_0668 Tresu_0668 Tresu_0668 729505 730413 + DNA adenine methylase COGs: COG0338 Site-specific DNA methylase~InterPro IPR012327~KEGG: ran:Riean_1788 DNA adenine methylase~PFAM: D12 class N6 adenine-specific DNA methyltransferase~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: DNA adenine methylase%3B~TIGRFAM: D12 class N6 adenine-specific DNA methyltransferase~IMG reference gene:2504607580~PFAM: D12 class N6 adenine-specific DNA methyltransferase~TIGRFAM: DNA adenine methylase (dam) gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0668 Tresu_0669 Tresu_0669 Tresu_0669 730415 731482 + Site-specific DNA-methyltransferase (adenine-specific) COGs: COG3392 Adenine-specific DNA methylase~InterPro IPR012327~KEGG: ran:Riean_1789 site-specific DNA-methyltransferase (adenine-specific)~PFAM: D12 class N6 adenine-specific DNA methyltransferase~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: Modification methylase FokI family protein%3B~IMG reference gene:2504607581~PFAM: D12 class N6 adenine-specific DNA methyltransferase gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0669 Tresu_0670 Tresu_0670 Tresu_0670 731484 732872 + hypothetical protein KEGG: ran:Riean_1790 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607582 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0670 Tresu_0671 Tresu_0671 Tresu_0671 732874 734007 + DNA methylase N-4/N-6 domain protein InterPro IPR002941~KEGG: hpc:HPPC_07210 putative RNA methylase~PFAM: DNA methylase N-4/N-6~SPTR: DNA-methyltransferase%3B~IMG reference gene:2504607583~PFAM: DNA methylase gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0671 Tresu_0672 Tresu_0672 Tresu_0672 734004 736247 + hypothetical protein COGs: COG4694 conserved hypothetical protein~KEGG: llo:LLO_2868 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607584 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0672 Tresu_0673 Tresu_0673 Tresu_0673 736651 737865 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607585~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0673 Tresu_0674 Tresu_0674 Tresu_0674 738076 740367 + hypothetical protein KEGG: mhp:MHP7448_0463 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607586 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0674 Tresu_0675 Tresu_0675 Tresu_0675 740525 741388 + hypothetical protein KEGG: pme:NATL1_00411 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607587 gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0675 Tresu_0676 Tresu_0676 Tresu_0676 741748 742227 + hypothetical protein IMG reference gene:2504607588 gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0676 Tresu_0677 Tresu_0677 Tresu_0677 742654 743067 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607589 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0677 Tresu_0678 Tresu_0678 Tresu_0678 743184 743795 + hypothetical protein IMG reference gene:2504607590 gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0678 Tresu_0679 Tresu_0679 Tresu_0679 743968 744303 + TM2 domain containing protein InterPro IPR007829~KEGG: coc:Coch_1399 TM2 domain containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607591~PFAM: TM2 domain gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0679 Tresu_0680 Tresu_0680 Tresu_0680 744368 744628 + hypothetical protein KEGG: cob:COB47_0151 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607592~PFAM: Protein of unknown function (DUF2752) gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0680 Tresu_0681 Tresu_0681 Tresu_0681 744705 744932 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607593~PFAM: Protein of unknown function (DUF2281) gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0681 Tresu_0682 Tresu_0682 Tresu_0682 744929 745306 + PilT protein domain protein COGs: COG3744 conserved hypothetical protein~InterPro IPR002716~KEGG: tde:TDE0671 PilT domain-containing protein~PFAM: PilT protein%2C N-terminal~SPTR: PIN domain protein%3B~IMG reference gene:2504607594~PFAM: PIN domain gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0682 Tresu_0683 Tresu_0683 Tresu_0683 745479 745931 + hypothetical protein IMG reference gene:2504607595 gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0683 Tresu_0684 Tresu_0684 Tresu_0684 745928 746668 + NERD domain protein InterPro IPR011528:IPR013498~KEGG: zpr:ZPR_4418 hypothetical membrane protein~PFAM: NERD%3B DNA topoisomerase%2C type IA%2C zn finger~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2504607596~PFAM: Nuclease-related domain%3B Topoisomerase DNA binding C4 zinc finger gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0684 Tresu_0685 Tresu_0685 Tresu_0685 746763 747560 + transposase IS4 family protein InterPro IPR002559~KEGG: pcu:pc1492 hypothetical protein~PFAM: Transposase%2C IS4-like~SPTR: Putative transposase%3B~IMG reference gene:2504607597~PFAM: Transposase DDE domain gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0685 Tresu_0686 Tresu_0686 Tresu_0686 747762 748430 + hypothetical protein KEGG: dat:HRM2_19130 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607598 gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0686 Tresu_0687 Tresu_0687 Tresu_0687 748793 749860 + hypothetical protein COGs: COG3274 conserved hypothetical protein~KEGG: ere:EUBREC_2644 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607599~PFAM: Acyltransferase family gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0687 Tresu_0688 Tresu_0688 Tresu_0688 750019 751113 + hypothetical protein KEGG: pin:Ping_1180 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607600~PFAM: Acyltransferase family gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0688 Tresu_0689 Tresu_0689 Tresu_0689 751306 751626 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607601 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0689 Tresu_0690 Tresu_0690 Tresu_0690 751885 752214 + hypothetical protein IMG reference gene:2504607602 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0690 Tresu_0691 Tresu_0691 Tresu_0691 752231 753143 + pseudogene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0691 Tresu_0692 Tresu_0692 Tresu_0692 753729 753854 - hypothetical protein IMG reference gene:2504607604 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0692 Tresu_0693 Tresu_0693 Tresu_0693 754148 755362 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607605~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0693 Tresu_0694 Tresu_0694 Tresu_0694 755551 756249 + Type II site-specific deoxyribonuclease InterPro IPR019070~KEGG: cyt:cce_3474 putative type II site-specific deoxyribonuclease~PFAM: Restriction endonuclease%2C type II%2C SinI~PRIAM: Type II site-specific deoxyribonuclease~SPTR: Type II site-specific deoxyribonuclease%3B~IMG reference gene:2504607606~PFAM: SinI restriction endonuclease gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0694 Tresu_0695 Tresu_0695 Tresu_0695 756294 757724 - DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: fsu:Fisuc_0930 DNA-cytosine methyltransferase~PFAM: C-5 cytosine methyltransferase~SPTR: Cytosine specific DNA methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607607~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm)%3B DNA binding domain%2C excisionase family gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0695 Tresu_0696 Tresu_0696 Tresu_0696 757789 758457 + hypothetical protein IMG reference gene:2504607608 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0696 Tresu_0697 Tresu_0697 Tresu_0697 758441 758644 + hypothetical protein IMG reference gene:2504607609 gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0697 Tresu_0698 Tresu_0698 Tresu_0698 759018 760232 - pseudogene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0698 Tresu_0699 Tresu_0699 Tresu_0699 760442 761557 + acyltransferase 3 COGs: COG1835 acyltransferase~InterPro IPR002656~KEGG: elm:ELI_1978 acyltransferase 3~PFAM: Acyltransferase 3~SPTR: Acyltransferase 3%3B~IMG reference gene:2504607611~PFAM: Acyltransferase family gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0699 Tresu_0700 Tresu_0700 Tresu_0700 761538 761690 - hypothetical protein IMG reference gene:2504607612 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0700 Tresu_0701 Tresu_0701 Tresu_0701 761721 762788 + hypothetical protein COGs: COG3274 conserved hypothetical protein~KEGG: ere:EUBREC_2644 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504607613~PFAM: Acyltransferase family gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0701 Tresu_0702 Tresu_0702 Tresu_0702 762858 763604 + hypothetical protein KEGG: syp:SYNPCC7002_A0598 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607614 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0702 Tresu_0703 Tresu_0703 Tresu_0703 763998 765293 + DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: bgf:BC1003_0968 DNA-cytosine methyltransferase~PFAM: C-5 cytosine methyltransferase~PRIAM: DNA (cytosine-5-)-methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607615~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0703 Tresu_0704 Tresu_0704 Tresu_0704 765304 766476 + Type II site-specific deoxyribonuclease InterPro IPR015300:IPR015109~KEGG: ere:EUBREC_0164 putative type II restriction enzyme~PFAM: Restriction endonuclease%2C type II%2C EcoRII%2C C-terminal%3B Restriction endonuclease%2C type II%2C EcoRII%2C N-terminal~PRIAM: Type II site-specific deoxyribonuclease~SPTR: Putative type II restriction enzyme%3B~IMG reference gene:2504607616~PFAM: EcoRII C terminal%3B Restriction endonuclease EcoRII%2C N-terminal gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0704 Tresu_0705 Tresu_0705 Tresu_0705 767028 768242 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607617~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0705 Tresu_0706 Tresu_0706 Tresu_0706 768420 768884 + hypothetical protein IMG reference gene:2504607618 gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0706 Tresu_0707 Tresu_0707 Tresu_0707 768953 769234 + plasmid maintenance system killer COGs: COG3549 Plasmid maintenance system killer protein~InterPro IPR007711~KEGG: pla:Plav_2941 plasmid maintenance system killer~PFAM: Plasmid maintenance system killer~SPTR: Plasmid maintenance system killer%3B~IMG reference gene:2504607619~PFAM: Plasmid maintenance system killer protein gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0707 Tresu_0708 Tresu_0708 Tresu_0708 769209 769526 + plasmid maintenance system antidote protein%2C XRE family COGs: COG3093 Plasmid maintenance system antidote protein~InterPro IPR013430:IPR001387~KEGG: gfo:GFO_1993 plasmid maintenance system antidote protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Addiction module antidote protein%2C HigA family%3B~TIGRFAM: Addiction module antidote protein%2C HigA~IMG reference gene:2504607620~PFAM: Helix-turn-helix~TIGRFAM: addiction module antidote protein%2C HigA family gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0708 Tresu_0709 Tresu_0709 Tresu_0709 769899 771114 - pseudogene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0709 Tresu_0710 Tresu_0710 Tresu_0710 771574 771903 + hypothetical protein IMG reference gene:2504607622 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0710 Tresu_0711 Tresu_0711 Tresu_0711 771920 772831 + hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607623 gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0711 Tresu_0712 Tresu_0712 Tresu_0712 773339 774589 + hypothetical protein KEGG: lpf:lpl2135 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607624 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0712 Tresu_0713 Tresu_0713 Tresu_0713 774737 775912 + DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: cbb:CLD_2548 DNA-cytosine methyltransferase~PFAM: C-5 cytosine methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504607625~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0713 Tresu_0714 Tresu_0714 Tresu_0714 775912 776802 + hypothetical protein SPTR: BsaWI endonuclease%3B~IMG reference gene:2504607626 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0714 Tresu_0715 Tresu_0715 Tresu_0715 777177 778391 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607627~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0715 Tresu_0716 Tresu_0716 Tresu_0716 778596 779663 + hypothetical protein COGs: COG3274 conserved hypothetical protein~KEGG: ere:EUBREC_2644 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504607628~PFAM: Acyltransferase family gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0716 Tresu_0717 Tresu_0717 Tresu_0717 779809 780564 + hypothetical protein IMG reference gene:2504607629 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0717 Tresu_0718 Tresu_0718 Tresu_0718 780947 781567 + hypothetical protein IMG reference gene:2504607630 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0718 Tresu_0719 Tresu_0719 Tresu_0719 782286 783398 + hypothetical protein InterPro IPR002110~KEGG: tva:TVAG_496720 ankyrin repeat protein~SPTR: Ankyrin repeat protein%2C putative%3B~IMG reference gene:2504607631 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0719 Tresu_0720 Tresu_0720 Tresu_0720 783482 784039 + pseudogene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0720 Tresu_0721 Tresu_0721 Tresu_0721 784164 784646 + hypothetical protein IMG reference gene:2504607633 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0721 Tresu_0722 Tresu_0722 Tresu_0722 784720 784968 + transcriptional regulator%2C AbrB family InterPro IPR006339:IPR007159~KEGG: tde:TDE0037 AbrB family transcriptional regulator~PFAM: Transcription regulator AbrB/SpoV%2C predicted~SMART: Transcription regulator AbrB/SpoV%2C predicted~SPTR: Transcriptional regulator%2C AbrB family%3B~TIGRFAM: Transcription regulator AbrB~IMG reference gene:2504607634~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0722 Tresu_0723 Tresu_0723 Tresu_0723 784965 785375 + protein of unknown function DUF132 InterPro IPR002850~KEGG: tde:TDE0036 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Protein of unknown function DUF132~IMG reference gene:2504607635~PFAM: PIN domain~TIGRFAM: putative toxin-antitoxin system toxin component%2C PIN family gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0723 Tresu_0724 Tresu_0724 Tresu_0724 785478 786167 + bifunctional deaminase-reductase domain protein InterPro IPR002734~KEGG: abi:Aboo_0416 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase~PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607636~PFAM: RibD C-terminal domain gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0724 Tresu_0725 Tresu_0725 Tresu_0725 786766 787983 - pseudogene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0725 Tresu_0726 Tresu_0726 Tresu_0726 788192 788809 + hypothetical protein IMG reference gene:2504607638 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0726 Tresu_0727 Tresu_0727 Tresu_0727 788817 789014 + hypothetical protein IMG reference gene:2504607639 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0727 Tresu_0728 Tresu_0728 Tresu_0728 789014 790990 + hypothetical protein IMG reference gene:2504607640 gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0728 Tresu_0729 Tresu_0729 Tresu_0729 790974 791678 + hypothetical protein IMG reference gene:2504607641 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0729 Tresu_0730 Tresu_0730 Tresu_0730 791690 791842 + hypothetical protein IMG reference gene:2504607642 gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0730 Tresu_0731 Tresu_0731 Tresu_0731 791847 792044 + hypothetical protein IMG reference gene:2504607643 gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0731 Tresu_0732 Tresu_0732 Tresu_0732 792044 793318 + hypothetical protein IMG reference gene:2504607644 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0732 Tresu_0733 Tresu_0733 Tresu_0733 793315 793878 + hypothetical protein IMG reference gene:2504607645 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0733 Tresu_0734 Tresu_0734 Tresu_0734 793898 794455 + hypothetical protein IMG reference gene:2504607646 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0734 Tresu_0735 Tresu_0735 Tresu_0735 794466 796175 + hypothetical protein IMG reference gene:2504607647 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0735 Tresu_0736 Tresu_0736 Tresu_0736 796178 797254 + KWG Leptospira repeat protein InterPro IPR011647~KEGG: cno:NT01CX_1069 hypothetical protein~PFAM: KWG Leptospira~SPTR: KWG Leptospira%3B~IMG reference gene:2504607648 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0736 Tresu_0737 Tresu_0737 Tresu_0737 797254 797724 + hypothetical protein IMG reference gene:2504607649 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0737 Tresu_0738 Tresu_0738 Tresu_0738 797790 798278 + hypothetical protein IMG reference gene:2504607650 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0738 Tresu_0739 Tresu_0739 Tresu_0739 798407 798883 + hypothetical protein IMG reference gene:2504607651 gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0739 Tresu_0740 Tresu_0740 Tresu_0740 799325 800539 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607652~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0740 Tresu_0741 Tresu_0741 Tresu_0741 800766 801101 + TM2 domain containing protein InterPro IPR007829~KEGG: coc:Coch_1399 TM2 domain containing protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607653~PFAM: TM2 domain gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0741 Tresu_0742 Tresu_0742 Tresu_0742 801166 801426 + hypothetical protein KEGG: cob:COB47_0151 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607654~PFAM: Protein of unknown function (DUF2752) gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0742 Tresu_0743 Tresu_0743 Tresu_0743 801503 801730 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607655~PFAM: Protein of unknown function (DUF2281) gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0743 Tresu_0744 Tresu_0744 Tresu_0744 801727 802104 + PilT protein domain protein COGs: COG3744 conserved hypothetical protein~InterPro IPR002716~KEGG: tde:TDE0671 PilT domain-containing protein~PFAM: PilT protein%2C N-terminal~SPTR: PIN domain protein%3B~IMG reference gene:2504607656~PFAM: PIN domain gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0744 Tresu_0745 Tresu_0745 Tresu_0745 802348 802689 + hypothetical protein KEGG: dsa:Desal_1433 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607657 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0745 Tresu_0746 Tresu_0746 Tresu_0746 802790 803023 + transcriptional regulator/antitoxin%2C MazE COGs: COG2336 Growth regulator~InterPro IPR007159~KEGG: lil:LA_1780 transcriptional regulator/antitoxin MazE~PFAM: Transcription regulator AbrB/SpoV%2C predicted~SMART: Transcription regulator AbrB/SpoV%2C predicted~SPTR: PemI family protein%3B~IMG reference gene:2504607658~PFAM: SpoVT / AbrB like domain gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0746 Tresu_0747 Tresu_0747 Tresu_0747 803017 803355 + transcriptional modulator of MazE/toxin%2C MazF COGs: COG2337 Growth inhibitor~InterPro IPR003477~KEGG: lil:LA_1781 ppGpp-regulated growth inhibitor ChpA/MazF~PFAM: PemK-like protein~SPTR: ChpA protein%3B~IMG reference gene:2504607659~PFAM: PemK-like protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0747 Tresu_0748 Tresu_0748 Tresu_0748 803727 804942 - pseudogene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0748 Tresu_0749 Tresu_0749 Tresu_0749 805151 805771 + hypothetical protein IMG reference gene:2504607661 gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0749 Tresu_0750 Tresu_0750 Tresu_0750 805776 805973 + hypothetical protein IMG reference gene:2504607662 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0750 Tresu_0751 Tresu_0751 Tresu_0751 805973 807397 + hypothetical protein KEGG: bmq:BMQ_2683 bacillus transposase protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607663 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0751 Tresu_0752 Tresu_0752 Tresu_0752 807417 807866 + hypothetical protein KEGG: bcy:Bcer98_1958 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607664 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0752 Tresu_0753 Tresu_0753 Tresu_0753 807912 808811 + hypothetical protein IMG reference gene:2504607665 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0753 Tresu_0754 Tresu_0754 Tresu_0754 808825 809379 + hypothetical protein IMG reference gene:2504607666 gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0754 Tresu_0755 Tresu_0755 Tresu_0755 809586 810176 + pseudogene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0755 Tresu_0756 Tresu_0756 Tresu_0756 810184 810381 + hypothetical protein IMG reference gene:2504607668 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0756 Tresu_0757 Tresu_0757 Tresu_0757 810381 812249 + hypothetical protein IMG reference gene:2504607669 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0757 Tresu_0758 Tresu_0758 Tresu_0758 812255 813136 + hypothetical protein KEGG: cbe:Cbei_3040 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607670~PFAM: Formylglycine-generating sulfatase enzyme gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0758 Tresu_0759 Tresu_0759 Tresu_0759 813250 813753 + hypothetical protein IMG reference gene:2504607671 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0759 Tresu_0760 Tresu_0760 Tresu_0760 813842 814195 + pseudogene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0760 Tresu_0761 Tresu_0761 Tresu_0761 814208 815356 + hypothetical protein KEGG: ate:Athe_0718 KWG repeat-containing protein~SPTR: KWG repeat domain protein%3B~IMG reference gene:2504607673 gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0761 Tresu_0762 Tresu_0762 Tresu_0762 815360 816214 + KWG Leptospira repeat protein InterPro IPR011647~KEGG: ate:Athe_0718 KWG repeat-containing protein~PFAM: KWG Leptospira~SPTR: KWG Leptospira%3B~IMG reference gene:2504607674 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0762 Tresu_0763 Tresu_0763 Tresu_0763 816374 816571 + hypothetical protein IMG reference gene:2504607675 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0763 Tresu_0764 Tresu_0764 Tresu_0764 816571 817851 + hypothetical protein KEGG: gmc:GY4MC1_2485 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607676 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0764 Tresu_0765 Tresu_0765 Tresu_0765 817856 818272 + hypothetical protein KEGG: elm:ELI_0228 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607677 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0765 Tresu_0766 Tresu_0766 Tresu_0766 818439 818564 + pseudogene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0766 Tresu_0767 Tresu_0767 Tresu_0767 818675 819940 + hypothetical protein KEGG: vsp:VS_II0984 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607679 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0767 Tresu_0768 Tresu_0768 Tresu_0768 819954 820502 + pseudogene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0768 Tresu_0769 Tresu_0769 Tresu_0769 820723 821160 + hypothetical protein IMG reference gene:2504607681 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0769 Tresu_0770 Tresu_0770 Tresu_0770 821237 821434 + hypothetical protein KEGG: tde:TDE0281 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607682 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0770 Tresu_0771 Tresu_0771 Tresu_0771 821431 821832 + PilT protein domain protein InterPro IPR002716~KEGG: tde:TDE0280 PilT domain-containing protein~PFAM: PilT protein%2C N-terminal~SPTR: PIN domain protein%3B~IMG reference gene:2504607683~PFAM: PIN domain gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0771 Tresu_0772 Tresu_0772 Tresu_0772 822141 822305 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607684 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0772 Tresu_0773 Tresu_0773 Tresu_0773 822307 822465 + hypothetical protein SPTR: Conserved domain protein%3B~IMG reference gene:2504607685 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0773 Tresu_0774 Tresu_0774 Tresu_0774 822556 822702 + hypothetical protein IMG reference gene:2504607686 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0774 Tresu_0775 Tresu_0775 Tresu_0775 822699 824099 + Radical SAM domain protein COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)~InterPro IPR007197:IPR006638~KEGG: fsu:Fisuc_0953 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504607687~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM additional 4Fe4S-binding domain gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0775 Tresu_0776 Tresu_0776 Tresu_0776 824078 826207 + ABC transporter related protein COGs: COG0178 Excinuclease ATPase subunit~InterPro IPR003439~KEGG: fsu:Fisuc_0952 excinuclease ATPase subunit-like protein~PFAM: ABC transporter-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607688~PFAM: Protein of unknown function%2C DUF258 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0776 Tresu_0777 Tresu_0777 Tresu_0777 826186 827240 + pseudogene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0777 Tresu_0778 Tresu_0778 Tresu_0778 827604 828818 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607690~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0778 Tresu_0779 Tresu_0779 Tresu_0779 828849 830426 + hypothetical protein InterPro IPR007829~KEGG: brm:Bmur_2846 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607691~PFAM: TM2 domain gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0779 Tresu_0780 Tresu_0780 Tresu_0780 830475 831602 + hypothetical protein KEGG: zpr:ZPR_3215 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607692 gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0780 Tresu_0781 Tresu_0781 Tresu_0781 831616 831936 + hypothetical protein IMG reference gene:2504607693 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0781 Tresu_0782 Tresu_0782 Tresu_0782 831986 832198 + hypothetical protein IMG reference gene:2504607694 gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0782 Tresu_0783 Tresu_0783 Tresu_0783 832195 832593 + PilT protein domain protein COGs: COG1487 nucleic acid-binding protein contains PIN domain~InterPro IPR002716~KEGG: tra:Trad_0837 PilT domain-containing protein~PFAM: PilT protein%2C N-terminal~SPTR: PilT protein domain protein%3B~IMG reference gene:2504607695~PFAM: PIN domain gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0783 Tresu_0784 Tresu_0784 Tresu_0784 832717 833157 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: cbe:Cbei_2368 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607696~PFAM: Acetyltransferase (GNAT) family gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0784 Tresu_0785 Tresu_0785 Tresu_0785 833318 833677 + protein of unknown function DUF891 InterPro IPR009241~KEGG: pph:Ppha_2124 protein of unknown function DUF891~PFAM: Protein of unknown function DUF891~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607697~PFAM: Phage derived protein Gp49-like (DUF891) gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0785 Tresu_0786 Tresu_0786 Tresu_0786 833667 833954 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ant:Arnit_1534 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504607698~PFAM: Helix-turn-helix gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0786 Tresu_0787 Tresu_0787 Tresu_0787 834065 834523 + hypothetical protein KEGG: sua:Saut_2050 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607699 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0787 Tresu_0788 Tresu_0788 Tresu_0788 834550 835203 + protein of unknown function DUF541 COGs: COG2968 conserved hypothetical protein~InterPro IPR007497~KEGG: eat:EAT1b_0973 protein of unknown function DUF541~PFAM: Protein of unknown function DUF541~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607700~PFAM: Protein of unknown function (DUF541) gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0788 Tresu_0789 Tresu_0789 Tresu_0789 835576 836790 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607701~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0789 Tresu_0790 Tresu_0790 Tresu_0790 836942 837577 + hypothetical protein IMG reference gene:2504607702 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0790 Tresu_0791 Tresu_0791 Tresu_0791 837768 838457 + bifunctional deaminase-reductase domain protein InterPro IPR002734~KEGG: abi:Aboo_0416 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase~PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607703~PFAM: RibD C-terminal domain gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0791 Tresu_0792 Tresu_0792 Tresu_0792 839057 840272 - pseudogene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0792 Tresu_0793 Tresu_0793 Tresu_0793 840476 841024 + hypothetical protein IMG reference gene:2504607705 gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0793 Tresu_0794 Tresu_0794 Tresu_0794 841111 841455 + hypothetical protein KEGG: ssm:Spirs_2529 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607706 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0794 Tresu_0795 Tresu_0795 Tresu_0795 842018 842395 + hypothetical protein InterPro IPR001876~IMG reference gene:2504607707~PFAM: Zn-finger in Ran binding protein and others gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0795 Tresu_0796 Tresu_0796 Tresu_0796 842469 842849 + hypothetical protein COGs: COG4683 conserved hypothetical protein~KEGG: mmw:Mmwyl1_0664 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504607708~PFAM: Phage derived protein Gp49-like (DUF891) gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0796 Tresu_0797 Tresu_0797 Tresu_0797 842818 843123 + helix-turn-helix domain protein InterPro IPR001387~KEGG: pfs:PFLU2450 hypothetical protein~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607709 gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0797 Tresu_0798 Tresu_0798 Tresu_0798 843236 844564 + protein of unknown function DUF262 InterPro IPR004919~KEGG: swo:Swol_2208 hypothetical protein~PFAM: Domain of unknown function DUF262~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607710~PFAM: Protein of unknown function DUF262 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0798 Tresu_0799 Tresu_0799 Tresu_0799 844561 846372 + protein of unknown function DUF262 InterPro IPR004919:IPR011089~KEGG: swo:Swol_2207 hypothetical protein~PFAM: Domain of unknown function DUF262%3B Domain of unknown function DUF1524 RloF~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607711~PFAM: Protein of unknown function (DUF1524)%3B Protein of unknown function DUF262 gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0799 Tresu_0800 Tresu_0800 Tresu_0800 846735 847949 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607712~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0800 Tresu_0801 Tresu_0801 Tresu_0801 848089 848418 - helix-turn-helix domain protein InterPro IPR001387~KEGG: lgs:LEGAS_1051 helix-turn-helix domain-containing protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Helix-turn-helix domain protein%3B~IMG reference gene:2504607713~PFAM: Helix-turn-helix gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0801 Tresu_0802 Tresu_0802 Tresu_0802 848611 848880 + hypothetical protein IMG reference gene:2504607714 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0802 Tresu_0803 Tresu_0803 Tresu_0803 848890 849333 + hypothetical protein IMG reference gene:2504607715 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0803 Tresu_0804 Tresu_0804 Tresu_0804 849255 849437 + pseudogene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0804 Tresu_0805 Tresu_0805 Tresu_0805 850221 851699 - ketol-acid reductoisomerase COGs: COG0059 Ketol-acid reductoisomerase~InterPro IPR013023:IPR013116:IPR000506~KEGG: rbi:RB2501_14429 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase C-terminal%3B Acetohydroxy acid isomeroreductase%2C catalytic~PRIAM: Ketol-acid reductoisomerase~SPTR: Ketol-acid reductoisomerase%3B~TIGRFAM: Acetohydroxy acid isomeroreductase~IMG reference gene:2504607717~PFAM: Acetohydroxy acid isomeroreductase%2C catalytic domain~TIGRFAM: ketol-acid reductoisomerase gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0805 Tresu_0806 Tresu_0806 Tresu_0806 851943 853118 - hydroxymethylpyrimidine transporter CytX COGs: COG1457 Purine-cytosine permease and related protein~InterPro IPR012732:IPR001248~KEGG: clo:HMPREF0868_1104 putative hydroxymethylpyrimidine transporter CytX~PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Hydroxymethylpyrimidine transporter CytX~IMG reference gene:2504607718~PFAM: Permease for cytosine/purines%2C uracil%2C thiamine%2C allantoin~TIGRFAM: probable hydroxymethylpyrimidine transporter CytX gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0806 Tresu_0807 Tresu_0807 Tresu_0807 853121 853912 - phosphomethylpyrimidine kinase COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase~InterPro IPR004399:IPR013749~KEGG: apr:Apre_1397 phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1~PRIAM: Phosphomethylpyrimidine kinase~SPTR: Phosphomethylpyrimidine kinase%3B~TIGRFAM: Phosphomethylpyrimidine kinase type-2~IMG reference gene:2504607719~PFAM: Phosphomethylpyrimidine kinase~TIGRFAM: phosphomethylpyrimidine kinase gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0807 Tresu_0808 Tresu_0808 Tresu_0808 854060 854731 - Thiamine-phosphate pyrophosphorylase COGs: COG0352 Thiamine monophosphate synthase~HAMAP: Thiamine monophosphate synthase~InterPro IPR003733~KEGG: elm:ELI_3352 hypothetical protein~PFAM: Thiamine monophosphate synthase~SPTR: Thiamine-phosphate pyrophosphorylase%3B~TIGRFAM: Thiamine monophosphate synthase~IMG reference gene:2504607720~PFAM: Thiamine monophosphate synthase/TENI~TIGRFAM: thiamine-phosphate pyrophosphorylase gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0808 Tresu_0809 Tresu_0809 Tresu_0809 854718 855536 - Hydroxyethylthiazole kinase COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family~HAMAP: Hydroxyethylthiazole kinase~InterPro IPR000417~KEGG: cac:CA_C3096 hydroxyethylthiazole kinase~PFAM: Hydroxyethylthiazole kinase~PRIAM: Hydroxyethylthiazole kinase~SPTR: Hydroxyethylthiazole kinase%3B~IMG reference gene:2504607721~PFAM: Hydroxyethylthiazole kinase family~TIGRFAM: hydroxyethylthiazole kinase gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0809 Tresu_0810 Tresu_0810 Tresu_0810 855879 856100 + hypothetical protein IMG reference gene:2504607722 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0810 Tresu_0811 Tresu_0811 Tresu_0811 856235 857323 + hypothetical protein KEGG: csh:Closa_3523 peptidoglycan-binding lysin domain protein~SPTR: Peptidoglycan-binding lysin domain protein%3B~IMG reference gene:2504607723 gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0811 Tresu_0812 Tresu_0812 Tresu_0812 857502 859109 + monooxygenase FAD-binding protein COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase~InterPro IPR002938~KEGG: bfs:BF0553 hypothetical protein~PFAM: Monooxygenase%2C FAD-binding~SPTR: Oxidoreductase%3B~IMG reference gene:2504607724~PFAM: FAD binding domain gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0812 Tresu_0813 Tresu_0813 Tresu_0813 859097 860248 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607725 gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0813 Tresu_0814 Tresu_0814 Tresu_0814 860257 861267 - Radical SAM domain protein COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein~InterPro IPR007197~KEGG: tde:TDE2506 radical SAM domain-containing protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504607726~PFAM: Radical SAM superfamily gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0814 Tresu_0815 Tresu_0815 Tresu_0815 861272 861688 - hypothetical protein IMG reference gene:2504607727 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0815 Tresu_0816 Tresu_0816 Tresu_0816 861751 862290 + NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR000086~KEGG: fba:FIC_00164 hypothetical protein~PFAM: NUDIX hydrolase domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607728~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0816 Tresu_0817 Tresu_0817 Tresu_0817 862280 862561 + hypothetical protein IMG reference gene:2504607729 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0817 Tresu_0818 Tresu_0818 Tresu_0818 862840 864525 + glycoside hydrolase family 3 domain protein COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR001764~KEGG: tde:TDE0024 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~SPTR: Glycosyl hydrolase%2C family 3%3B~IMG reference gene:2504607731~PFAM: Glycosyl hydrolase family 3 N terminal domain gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0818 Tresu_0819 Tresu_0819 Tresu_0819 864573 864881 - thioredoxin COGs: COG3118 Thioredoxin domain-containing protein~InterPro IPR005746:IPR013766~KEGG: rsd:TGRD_011 thioredoxin~PFAM: Thioredoxin domain~SPTR: Thioredoxin%3B~TIGRFAM: Thioredoxin~IMG reference gene:2504607732~PFAM: Thioredoxin~TIGRFAM: thioredoxin gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0819 Tresu_0820 Tresu_0820 Tresu_0820 864896 865093 - hypothetical protein SPTR: Ferredoxin thioredoxin reductase catalytic beta chain%3B~IMG reference gene:2504607733~PFAM: Ferredoxin thioredoxin reductase catalytic beta chain gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0820 Tresu_0821 Tresu_0821 Tresu_0821 865349 867421 + tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division~HAMAP: Glucose-inhibited division protein A~InterPro IPR002218:IPR004416~KEGG: tde:TDE0828 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~PFAM: Glucose-inhibited division protein A-related~SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG%3B~IMG reference gene:2504607734~PFAM: Glucose inhibited division protein A~TIGRFAM: glucose-inhibited division protein A gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0821 Tresu_0822 Tresu_0822 Tresu_0822 867421 868437 + Heptaprenyl diphosphate synthase component I COGs: COG4769 membrane protein~InterPro IPR010898~KEGG: tde:TDE1926 hypothetical protein~PFAM: Heptaprenyl diphosphate synthase component I~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504607735~PFAM: Heptaprenyl diphosphate synthase component I gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0822 Tresu_0823 Tresu_0823 Tresu_0823 868434 869567 - peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR000587:IPR000994~KEGG: btk:BT9727_4344 Xaa-Pro dipeptidase (proline dipeptidase)~PFAM: Peptidase M24%2C structural domain%3B Creatinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607736~PFAM: Metallopeptidase family M24%3B Creatinase/Prolidase N-terminal domain gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0823 Tresu_0824 Tresu_0824 Tresu_0824 869586 871196 - integral membrane protein MviN COGs: COG0728 membrane protein putative virulence factor~InterPro IPR004268~KEGG: tde:TDE0342 integral membrane protein MviN~PFAM: Flagellin assembly%2C membrane protein MviN~SPTR: Integral membrane protein MviN%3B~TIGRFAM: Flagellin assembly%2C membrane protein MviN~IMG reference gene:2504607737~PFAM: MviN-like protein~TIGRFAM: integral membrane protein MviN gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0824 Tresu_0825 Tresu_0825 Tresu_0825 871279 873009 + adenylate/guanylate cyclase COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054~KEGG: pmx:PERMA_0988 adenylate cyclase~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate cyclase%3B~IMG reference gene:2504607738~PFAM: Adenylate and Guanylate cyclase catalytic domain gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0825 Tresu_0826 Tresu_0826 Tresu_0826 872988 874487 + hypothetical protein KEGG: pfh:PFHG_00976 conserved hypothetical protein~SPTR: Viral A-type inclusion protein%2C putative%3B~IMG reference gene:2504607739 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0826 Tresu_0827 Tresu_0827 Tresu_0827 874583 875392 + pseudouridine synthase Rsu COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR000748:IPR002942:IPR006145~KEGG: bae:BATR1942_12810 putative 16S pseudouridylate synthase~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SMART: RNA-binding S4~SPTR: Putative 16S pseudouridylate synthase%3B~TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~IMG reference gene:2504607740~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0827 Tresu_0828 Tresu_0828 Tresu_0828 875385 877064 + Formate--tetrahydrofolate ligase COGs: COG2759 Formyltetrahydrofolate synthetase~HAMAP: Formate-tetrahydrofolate ligase%2C FTHFS~InterPro IPR000559~KEGG: eel:EUBELI_01474 formate--tetrahydrofolate ligase~PFAM: Formate-tetrahydrofolate ligase%2C FTHFS~PRIAM: Formate--tetrahydrofolate ligase~SPTR: Formate--tetrahydrofolate ligase%3B~IMG reference gene:2504607741~PFAM: Formate--tetrahydrofolate ligase gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0828 Tresu_0829 Tresu_0829 Tresu_0829 877189 877794 - phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein COGs: COG0560 Phosphoserine phosphatase~InterPro IPR011863:IPR005834~KEGG: eel:EUBELI_20125 phosphoserine phosphatase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein~IMG reference gene:2504607742~PFAM: Putative Phosphatase~TIGRFAM: Haloacid Dehalogenase superfamily%2C subfamily IB%2C phosphoserine phosphatase-like%3B phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0829 Tresu_0830 Tresu_0830 Tresu_0830 877902 879500 + 2-isopropylmalate synthase/homocitrate synthase family protein COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR005675:IPR000891:IPR013709~KEGG: tmt:Tmath_1610 2-isopropylmalate synthase/homocitrate synthase family protein~PFAM: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain%3B Pyruvate carboxyltransferase~PRIAM: (R)-citramalate synthase~SMART: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~SPTR: 2-isopropylmalate synthase/homocitrate synthase family protein%3B~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase-related~IMG reference gene:2504607743~PFAM: HMGL-like%3B LeuA allosteric (dimerisation) domain~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0830 Tresu_0831 Tresu_0831 Tresu_0831 879598 880683 + 3-isopropylmalate dehydrogenase COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase~HAMAP: Isopropylmalate dehydrogenase~InterPro IPR004429:IPR001804~KEGG: cbt:CLH_0305 3-isopropylmalate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase~PRIAM: 3-isopropylmalate dehydrogenase~SPTR: 3-isopropylmalate dehydrogenase%3B~TIGRFAM: Isopropylmalate dehydrogenase~IMG reference gene:2504607744~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: 3-isopropylmalate dehydrogenase gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0831 Tresu_0832 Tresu_0832 Tresu_0832 880821 882938 + histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594:IPR001789~KEGG: fsu:Fisuc_1259 histidine kinase~PFAM: Signal transduction response regulator%2C receiver domain%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SPTR: Sensory box histidine kinase/response regulator%3B~IMG reference gene:2504607745~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0832 Tresu_0833 Tresu_0833 Tresu_0833 883082 884350 + Diaminopimelate decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR022644:IPR022643~KEGG: cni:Calni_0514 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2%2C C-terminal%3B Orn/DAP/Arg decarboxylase 2%2C N-terminal~PRIAM: Diaminopimelate decarboxylase~SPTR: Diaminopimelate decarboxylase%3B~IMG reference gene:2504607746~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain~TIGRFAM: diaminopimelate decarboxylase gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0833 Tresu_0834 Tresu_0834 Tresu_0834 884388 884798 + hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012827:IPR012312~KEGG: tde:TDE1302 hemerythrin family protein~PFAM: Haemerythrin/HHE cation-binding motif~SPTR: Hemerythrin family protein%3B~TIGRFAM: Haemerythrin-like%2C metal-binding~IMG reference gene:2504607747~PFAM: Hemerythrin HHE cation binding domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0834 Tresu_0835 Tresu_0835 Tresu_0835 885340 885549 + FeoA family protein InterPro IPR007167~KEGG: cbe:Cbei_4198 FeoA family protein~PFAM: Ferrous iron transporter%2C FeoA subunit~SMART: Ferrous iron transporter%2C FeoA subunit~SPTR: FeoA family protein%3B~IMG reference gene:2504607748~PFAM: FeoA domain gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0835 Tresu_0836 Tresu_0836 Tresu_0836 885612 885833 + FeoA family protein COGs: COG1918 Fe2+ transport system protein A~InterPro IPR007167~KEGG: ere:EUBREC_1582 hypothetical protein~PFAM: Ferrous iron transporter%2C FeoA subunit~SMART: Ferrous iron transporter%2C FeoA subunit~SPTR: Fe2+ transport system protein A%3B~IMG reference gene:2504607749~PFAM: FeoA domain gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0836 Tresu_0837 Tresu_0837 Tresu_0837 885835 888102 + ferrous iron transport protein B COGs: COG0370 Fe2+ transport system protein B~InterProIPR005225:IPR003373:IPR002917:IPR011619:IPR 011642:IPR011640~KEGG: ere:EUBREC_1583 ferrous iron transport protein B~PFAM: GTP-binding protein%2C HSR1-related%3B Ferrous iron transport protein B%2C N-terminal%3B Nucleoside recognition%3B Ferrous iron transport protein B%2C C-terminal~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Ferrous iron transport protein B%3B Small GTP-binding protein~IMG reference gene:2504607750~PFAM: Ferrous iron transport protein B%3B Ferrous iron transport protein B C terminus%3B Nucleoside recognition~TIGRFAM: ferrous iron transporter FeoB%3B small GTP-binding protein domain gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0837 Tresu_0838 Tresu_0838 Tresu_0838 888345 888503 + hypothetical protein IMG reference gene:2504607751 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0838 Tresu_0839 Tresu_0839 Tresu_0839 888760 890181 + amino acid carrier protein COGs: COG1115 Na+/alanine symporter~InterPro IPR001463~KEGG: shi:Shel_17880 amino acid carrier protein~PFAM: Sodium:alanine symporter~SPTR: Amino acid carrier protein%3B~TIGRFAM: Sodium:alanine symporter~IMG reference gene:2504607752~PFAM: Sodium:alanine symporter family~TIGRFAM: amino acid carrier protein gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0839 Tresu_0840 Tresu_0840 Tresu_0840 890294 890620 + hypothetical protein KEGG: tde:TDE2321 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607753 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0840 Tresu_0841 Tresu_0841 Tresu_0841 890718 891218 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterPro IPR014284:IPR007627:IPR013249~KEGG: tde:TDE2320 RNA polymerase sigma-24 factor%2C putative~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2~SPTR: RNA polymerase sigma-24 factor%2C putative%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504607754~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0841 Tresu_0842 Tresu_0842 Tresu_0842 891215 891667 + hypothetical protein KEGG: tde:TDE2319 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607755 gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0842 Tresu_0843 Tresu_0843 Tresu_0843 891688 893829 + glycogen debranching enzyme GlgX COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterPro IPR011837:IPR004193:IPR006047:IPR006589~KEGG: tde:TDE0101 alpha-amylase family protein~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal%3B Glycosyl hydrolase%2C family 13%2C catalytic domain~PRIAM: Isoamylase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain~SPTR: Glycogen debranching enzyme GlgX%3B~TIGRFAM: Glycogen debranching enzyme~IMG reference gene:2504607756~PFAM: Alpha amylase%2C catalytic domain%3B Carbohydrate-binding module 48 (Isoamylase N-terminal domain)~TIGRFAM: glycogen debranching enzyme GlgX gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0843 Tresu_0844 Tresu_0844 Tresu_0844 893933 896380 + glycogen/starch/alpha-glucan phosphorylase COGs: COG0058 Glucan phosphorylase~InterPro IPR011833:IPR000811~KEGG: tde:TDE2411 glycogen phosphorylase~PFAM: Glycosyl transferase%2C family 35~SPTR: Phosphorylase%3B~TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase~IMG reference gene:2504607757~PFAM: Carbohydrate phosphorylase~TIGRFAM: glycogen/starch/alpha-glucan phosphorylases gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0844 Tresu_0845 Tresu_0845 Tresu_0845 896964 897860 + protein of unknown function DUF6 transmembrane COGs: COG5006 permease DMT superfamily protein~InterPro IPR000620~KEGG: csh:Closa_1874 protein of unknown function DUF6 transmembrane~PFAM: Drug/metabolite transporter~SPTR: Putative membrane protein%3B~IMG reference gene:2504607758~PFAM: EamA-like transporter family gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0845 Tresu_0846 Tresu_0846 Tresu_0846 897984 899288 + membrane protein involved in aromatic hydrocarbon degradation COGs: COG2067 Long-chain fatty acid transport protein~InterPro IPR005017~KEGG: ipo:Ilyop_0483 membrane protein involved in aromatic hydrocarbon degradation~PFAM: Membrane protein%2C aromatic hydrocarbon degradation~SPTR: Membrane protein involved in aromatic hydrocarbon degradation%3B~IMG reference gene:2504607759~PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0846 Tresu_0847 Tresu_0847 Tresu_0847 899285 901252 - UvrABC system protein C COGs: COG0322 Nuclease subunit of the excinuclease complex~HAMAP: Excinuclease ABC%2C C subunit~InterPro IPR004791:IPR000305:IPR001943:IPR001162~KEGG: tde:TDE2478 excinuclease ABC%2C C subunit~PFAM: Excinuclease ABC%2C C subunit%2C C-terminal%3B Excinuclease ABC%2C C subunit%2C N-terminal%3B UvrB/UvrC protein~SMART: Excinuclease ABC%2C C subunit%2C N-terminal~SPTR: UvrABC system protein C%3B~TIGRFAM: Excinuclease ABC%2C C subunit~IMG reference gene:2504607760~PFAM: UvrB/uvrC motif%3B UvrC Helix-hairpin-helix N-terminal%3B GIY-YIG catalytic domain~TIGRFAM: excinuclease ABC%2C C subunit gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0847 Tresu_0848 Tresu_0848 Tresu_0848 901256 902743 + Fibronectin type III domain protein InterPro IPR003961~KEGG: tde:TDE0446 fibronectin type III domain-containing protein~PFAM: Fibronectin%2C type III~SPTR: Fibronectin type III domain protein%3B~IMG reference gene:2504607761 gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0848 Tresu_0849 Tresu_0849 Tresu_0849 902753 905416 + Tetratricopeptide TPR_2 repeat-containing protein COGs: COG2956 N-acetylglucosaminyl transferase~InterPro IPR013105:IPR001440:IPR019734~KEGG: tde:TDE0447 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504607762~PFAM: Tetratricopeptide repeat gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0849 Tresu_0850 Tresu_0850 Tresu_0850 905697 906197 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase~InterPro IPR000031~KEGG: cpr:CPR_0670 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: Phosphoribosylaminoimidazole carboxylase%2C core~PRIAM: Phosphoribosylaminoimidazole carboxylase~SPTR: Phosphoribosylaminoimidazole carboxylase%2C catalytic subunit%3B~TIGRFAM: Phosphoribosylaminoimidazole carboxylase%2C core~IMG reference gene:2504607763~PFAM: AIR carboxylase~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C PurE protein gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0850 Tresu_0851 Tresu_0851 Tresu_0851 906280 907767 + amidophosphoribosyltransferase COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase~InterPro IPR005854:IPR000583:IPR000836~KEGG: ckr:CKR_2383 amidophosphoribosyltransferase~PFAM: Glutamine amidotransferase%2C class-II%3B Phosphoribosyltransferase~PRIAM: Amidophosphoribosyltransferase~SPTR: Amidophosphoribosyltransferase%3B~TIGRFAM: Amidophosphoribosyl transferase~IMG reference gene:2504607764~PFAM: Phosphoribosyl transferase domain%3B Glutamine amidotransferases class-II~TIGRFAM: amidophosphoribosyltransferase gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0851 Tresu_0852 Tresu_0852 Tresu_0852 908272 908517 + hypothetical protein IMG reference gene:2504607765 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0852 Tresu_0853 Tresu_0853 Tresu_0853 908505 909098 - hypothetical protein IMG reference gene:2504607766 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0853 Tresu_0854 Tresu_0854 Tresu_0854 909162 909590 - pseudogene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0854 Tresu_0855 Tresu_0855 Tresu_0855 909744 911057 - putative ATPase InterPro IPR011579:IPR004256~KEGG: bfr:BF2824 putative ATPase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607768~PFAM: Archaeal ATPase%3B Archaea bacterial proteins of unknown function gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0855 Tresu_0856 Tresu_0856 Tresu_0856 911404 912105 - hypothetical protein KEGG: tde:TDE2734 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607769 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0856 Tresu_0857 Tresu_0857 Tresu_0857 912364 912600 + hypothetical protein IMG reference gene:2504607770 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0857 Tresu_0858 Tresu_0858 Tresu_0858 912597 912992 + NLP/P60 protein InterPro IPR000064~KEGG: ere:EUBREC_3573 peptidase%2C M23 family~PFAM: NLP/P60~IMG reference gene:2504607771~PFAM: NlpC/P60 family gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0858 Tresu_0859 Tresu_0859 Tresu_0859 912989 913411 + hypothetical protein IMG reference gene:2504607772 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0859 Tresu_0860 Tresu_0860 Tresu_0860 913706 914182 + transposase IS4 family protein COGs: COG3666 Transposase and inactivated derivatives~KEGG: cki:Calkr_2036 transposase IS4 family protein~SPTR: Transposase%2C IS4 family%3B~IMG reference gene:2504607773~PFAM: Transposase domain (DUF772) gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0860 Tresu_0861 Tresu_0861 Tresu_0861 914415 914614 - pseudogene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0861 Tresu_0862 Tresu_0862 Tresu_0862 914617 915015 - CMP/dCMP deaminase zinc-binding protein COGs: COG0295 Cytidine deaminase~InterPro IPR002125~KEGG: lhe:lhv_1123 cytidine deaminase~PFAM: CMP/dCMP deaminase%2C zinc-binding~SPTR: CMP/dCMP deaminase zinc-binding%3B~IMG reference gene:2504607775~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0862 Tresu_0863 Tresu_0863 Tresu_0863 915030 915206 - hypothetical protein IMG reference gene:2504607776 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0863 Tresu_0864 Tresu_0864 Tresu_0864 915363 916295 - ABC-type transporter%2C integral membrane subunit COGs: COG1079 ABC-type transport system permease component~InterPro IPR001851~KEGG: tde:TDE1947 ABC transporter%2C permease protein~PFAM: ABC transporter permease~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2504607777~PFAM: Branched-chain amino acid transport system / permease component gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0864 Tresu_0865 Tresu_0865 Tresu_0865 916292 917434 - ABC-type transporter%2C integral membrane subunit COGs: COG4603 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: tde:TDE1948 ABC transporter%2C permease protein~PFAM: ABC transporter permease~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2504607778~PFAM: Branched-chain amino acid transport system / permease component gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0865 Tresu_0866 Tresu_0866 Tresu_0866 917425 918951 - Monosaccharide-transporting ATPase COGs: COG3845 ABC-type uncharacterized transport systems ATPase components~InterPro IPR003439:IPR003593~KEGG: tde:TDE1949 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504607779~PFAM: ABC transporter gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0866 Tresu_0867 Tresu_0867 Tresu_0867 919068 920147 - basic membrane lipoprotein COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein~InterPro IPR003760~KEGG: tde:TDE1950 membrane lipoprotein TmpC%2C putative~PFAM: Basic membrane lipoprotein~SPTR: Membrane lipoprotein TmpC%2C putative%3B~IMG reference gene:2504607780~PFAM: Basic membrane protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0867 Tresu_0868 Tresu_0868 Tresu_0868 920656 921357 - Integrase catalytic region InterPro IPR001584~KEGG: cph:Cpha266_1645 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~IMG reference gene:2504607781~PFAM: Integrase core domain gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0868 Tresu_0869 Tresu_0869 Tresu_0869 921411 922328 + hypothetical protein IMG reference gene:2504607782 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0869 Tresu_0870 Tresu_0870 Tresu_0870 922725 922976 + pseudogene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0870 Tresu_0871 Tresu_0871 Tresu_0871 922993 923295 + pseudogene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0871 Tresu_0872 Tresu_0872 Tresu_0872 923390 924586 - hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: bvu:BVU_0570 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607785 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0872 Tresu_0873 Tresu_0873 Tresu_0873 924848 926305 + aaa+ superfamily atpase COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: blb:BBMN68_1015 aaa+ superfamily atpase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607786 gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0873 Tresu_0874 Tresu_0874 Tresu_0874 926527 927393 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: tde:TDE2269 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607787~PFAM: Formylglycine-generating sulfatase enzyme gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0874 Tresu_0875 Tresu_0875 Tresu_0875 927709 928353 + hypothetical protein IMG reference gene:2504607788 gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0875 Tresu_0876 Tresu_0876 Tresu_0876 928457 929602 - hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: dfe:Dfer_3078 hypothetical protein~SPTR: Putative ATPase%3B~IMG reference gene:2504607789~PFAM: ATPase family associated with various cellular activities (AAA) gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0876 Tresu_0877 Tresu_0877 Tresu_0877 929725 930480 - Zeta toxin family protein InterPro IPR010488~KEGG: ecr:ECIAI1_4248 putative zeta toxin%3B poison-antidote element~PFAM: Zeta toxin~SPTR: Putative zeta toxin%3B poison-antidote element%3B~IMG reference gene:2504607790~PFAM: Zeta toxin gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0877 Tresu_0878 Tresu_0878 Tresu_0878 930483 930686 - hypothetical protein IMG reference gene:2504607791 gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0878 Tresu_0879 Tresu_0879 Tresu_0879 930942 932051 + phosphoribosylformylglycinamidine cyclo-ligase COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase~InterPro IPR004733:IPR000728:IPR010918~KEGG: cbi:CLJ_B3130 phosphoribosylaminoimidazole synthetase~PFAM: AIR synthase-related protein%2C C-terminal%3B AIR synthase-related protein~PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase~SPTR: Phosphoribosylformylglycinamidine cyclo-ligase%3B~TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase~IMG reference gene:2504607792~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylaminoimidazole synthetase gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0879 Tresu_0880 Tresu_0880 Tresu_0880 932044 932670 + phosphoribosylglycinamide formyltransferase COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN~InterPro IPR004607:IPR002376~KEGG: sta:STHERM_c12550 hypothetical protein~PFAM: Formyl transferase%2C N-terminal~PRIAM: Phosphoribosylglycinamide formyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphoribosylglycinamide formyltransferase~IMG reference gene:2504607793~PFAM: Formyl transferase~TIGRFAM: phosphoribosylglycinamide formyltransferase%2C formyltetrahydrofolate-dependent gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0880 Tresu_0881 Tresu_0881 Tresu_0881 932667 933383 - UBA/THIF-type NAD/FAD binding protein COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1~InterPro IPR000594~KEGG: cpy:Cphy_3486 UBA/ThiF-type NAD/FAD binding protein~PFAM: UBA/THIF-type NAD/FAD binding fold~SPTR: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1%3B~IMG reference gene:2504607794~PFAM: ThiF family gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0881 Tresu_0882 Tresu_0882 Tresu_0882 933385 934857 - OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE2148 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504607795~PFAM: OmpA family gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0882 Tresu_0883 Tresu_0883 Tresu_0883 935366 937414 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2142 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504607796~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0883 Tresu_0884 Tresu_0884 Tresu_0884 937647 937898 + sodium pump decarboxylase gamma subunit InterPro IPR005899~PFAM: Sodium ion-translocating decarboxylase~IMG reference gene:2504607797~PFAM: Oxaloacetate decarboxylase%2C gamma chain~TIGRFAM: sodium pump decarboxylases%2C gamma subunit gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0884 Tresu_0885 Tresu_0885 Tresu_0885 937927 939993 + oxaloacetate decarboxylase alpha subunit COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase~InterPro IPR005776:IPR000891:IPR003379:IPR000089~KEGG: tpp:TPASS_0056 pyruvate carboxylase subunit B~PFAM: Carboxylase%2C conserved domain%3B Pyruvate carboxyltransferase%3B Biotin/lipoyl attachment~PRIAM: Methylmalonyl-CoA carboxytransferase~SPTR: Oxaloacetate decarboxylase alpha subunit%3B~TIGRFAM: Oxaloacetate decarboxylase%2C alpha subunit~IMG reference gene:2504607798~PFAM: HMGL-like%3B Conserved carboxylase domain%3B Biotin-requiring enzyme~TIGRFAM: oxaloacetate decarboxylase alpha subunit gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0885 Tresu_0886 Tresu_0886 Tresu_0886 940046 941473 + sodium ion-translocating decarboxylase%2C beta subunit COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit~InterPro IPR005661~KEGG: tpp:TPASS_0057 oxaloacetate decarboxylase%2C subunit beta~PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~PRIAM: Oxaloacetate decarboxylase~SPTR: Oxaloacetate decarboxylase%2C subunit beta (OadB)%3B~TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~IMG reference gene:2504607799~PFAM: subunit~TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0886 Tresu_0887 Tresu_0887 Tresu_0887 941541 941882 + hypothetical protein IMG reference gene:2504607800 gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0887 Tresu_0888 Tresu_0888 Tresu_0888 941953 942348 + hypothetical protein IMG reference gene:2504607801 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0888 Tresu_0889 Tresu_0889 Tresu_0889 942795 943925 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504607802~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0889 Tresu_0890 Tresu_0890 Tresu_0890 944034 944876 - hypothetical protein KEGG: vfi:VF_1640 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607803 gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0890 Tresu_0891 Tresu_0891 Tresu_0891 945089 945403 + 50S ribosomal protein L21 COGs: COG0261 Ribosomal protein L21~HAMAP: Ribosomal protein L21~InterPro IPR001787~KEGG: tde:TDE1751 50S ribosomal protein L21~PFAM: Ribosomal protein L21~SPTR: 50S ribosomal protein L21%3B~TIGRFAM: Ribosomal protein L21~IMG reference gene:2504607804~PFAM: Ribosomal prokaryotic L21 protein~TIGRFAM: ribosomal protein L21 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0891 Tresu_0892 Tresu_0892 Tresu_0892 945404 945736 + protein of unknown function DUF464 COGs: COG2868 ribosomal protein~InterPro IPR007422~KEGG: aar:Acear_0569 protein of unknown function DUF464~PFAM: Protein of unknown function DUF464~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607805~PFAM: Protein of unknown function (DUF464) gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0892 Tresu_0893 Tresu_0893 Tresu_0893 945767 946027 + 50S ribosomal protein L27 COGs: COG0211 Ribosomal protein L27~HAMAP: Ribosomal protein L27~InterPro IPR001684~KEGG: tpp:TPASS_0743 50S ribosomal protein L27~PFAM: Ribosomal protein L27~SPTR: 50S ribosomal protein L27%3B~TIGRFAM: Ribosomal protein L27~IMG reference gene:2504607806~PFAM: Ribosomal L27 protein~TIGRFAM: ribosomal protein L27 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0893 Tresu_0894 Tresu_0894 Tresu_0894 946129 947250 + GTPase obg COGs: COG0536 GTPase~HAMAP: GTP-binding protein Obg/CgtA~InterPro IPR014100:IPR006169:IPR002917~KEGG: tde:TDE1748 GTPase ObgE~PFAM: GTP1/OBG subdomain%3B GTP-binding protein%2C HSR1-related~SPTR: GTPase obg%3B~TIGRFAM: GTP-binding protein Obg/CgtA~IMG reference gene:2504607807~PFAM: GTPase of unknown function%3B GTP1/OBG~TIGRFAM: Obg family GTPase CgtA%3B small GTP-binding protein domain gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0894 Tresu_0895 Tresu_0895 Tresu_0895 947253 947909 + nicotinate-nucleotide adenylyltransferase COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase~HAMAP: Probable nicotinate-nucleotide adenylyltransferase~InterPro IPR004821:IPR005248:IPR004820~KEGG: bga:BG0806 hypothetical protein~PFAM: Cytidylyltransferase~PRIAM: Nicotinate-nucleotide adenylyltransferase~SPTR: Probable nicotinate-nucleotide adenylyltransferase%3B~TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase%3B Cytidyltransferase-related~IMG reference gene:2504607808~PFAM: Cytidylyltransferase~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0895 Tresu_0896 Tresu_0896 Tresu_0896 947893 948501 + metal dependent phosphohydrolase COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism~InterPro IPR005249:IPR006674:IPR003607~KEGG: tde:TDE1747 putative nicotinate-nucleotide adenylyltransferase~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~SMART: Metal-dependent phosphohydrolase%2C HD domain~SPTR: Nicotinate (Nicotinamide) nucleotide adenylyltransferase%3B~TIGRFAM: Conserved hypothetical protein CHP00488~IMG reference gene:2504607809~PFAM: HD domain~TIGRFAM: putative HD superfamily hydrolase of NAD metabolism gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0896 Tresu_0897 Tresu_0897 Tresu_0897 948520 949740 + hypothetical protein COGs: COG1316 Transcriptional regulator~KEGG: tde:TDE1746 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607810~PFAM: Cell envelope-related transcriptional attenuator domain gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0897 Tresu_0898 Tresu_0898 Tresu_0898 949747 950094 + iojap-like protein COGs: COG0799 Iojap protein~InterPro IPR004394~KEGG: tde:TDE1745 hypothetical protein~PFAM: Ribosome-associated%2C Iojap-like~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Ribosome-associated%2C Iojap-like~IMG reference gene:2504607811~PFAM: Domain of unknown function DUF143~TIGRFAM: iojap-like ribosome-associated protein gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0898 Tresu_0899 Tresu_0899 Tresu_0899 950099 951088 - Lytic transglycosylase catalytic InterPro IPR008258~KEGG: ssm:Spirs_2858 lytic transglycosylase catalytic~PFAM: Lytic transglycosylase-like%2C catalytic~SPTR: Lytic transglycosylase catalytic%3B~IMG reference gene:2504607812~PFAM: Transglycosylase SLT domain gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0899 Tresu_0900 Tresu_0900 Tresu_0900 951088 952152 - hypothetical protein KEGG: tde:TDE2150 hypothetical protein~SPTR: Tetratricopeptide repeat domain protein%3B~IMG reference gene:2504607813 gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0900 Tresu_0901 Tresu_0901 Tresu_0901 952276 952722 + hypothetical protein IMG reference gene:2504607814 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0901 Tresu_0902 Tresu_0902 Tresu_0902 952709 954520 + putative lipoprotein KEGG: tde:TDE1053 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504607815 gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0902 Tresu_0903 Tresu_0903 Tresu_0903 954675 955100 + preprotein translocase%2C YajC subunit COGs: COG1862 Preprotein translocase subunit YajC~InterPro IPR003849~KEGG: tde:TDE0682 preprotein translocase%2C YajC subunit~PFAM: Preprotein translocase YajC~SPTR: Preprotein translocase%2C YajC subunit%3B~TIGRFAM: Preprotein translocase YajC~IMG reference gene:2504607816~PFAM: Preprotein translocase subunit~TIGRFAM: preprotein translocase%2C YajC subunit gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0903 Tresu_0904 Tresu_0904 Tresu_0904 955093 956829 + protein-export membrane protein SecD COGs: COG0342 Preprotein translocase subunit SecD~InterPro IPR005791:IPR022645:IPR022646:IPR022813~KEGG: tde:TDE0681 preprotein translocase subunit SecD~PFAM: Preprotein translocase%2C SecD/SecF/SecDF%3B SecD/SecF/SecDF export membrane protein%2C GG motif%2C N-terminal~SPTR: Protein-export membrane protein SecD%3B~TIGRFAM: SecD export membrane protein%3B SecD/SecF/SecDF export membrane protein%2C bacteria~IMG reference gene:2504607817~PFAM: Protein export membrane protein%3B SecD/SecF GG Motif~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0904 Tresu_0905 Tresu_0905 Tresu_0905 956829 958079 + protein-export membrane protein SecF COGs: COG0341 Preprotein translocase subunit SecF~InterPro IPR005665:IPR022645:IPR022813~KEGG: tde:TDE0680 preprotein translocase subunit SecF~PFAM: Preprotein translocase%2C SecD/SecF/SecDF~SPTR: Protein-export membrane protein SecF%3B~TIGRFAM: SecF protein%3B SecD/SecF/SecDF export membrane protein%2C bacteria~IMG reference gene:2504607818~PFAM: Protein export membrane protein~TIGRFAM: protein-export membrane protein%2C SecD/SecF family%3B protein-export membrane protein SecF gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0905 Tresu_0906 Tresu_0906 Tresu_0906 958213 959067 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase COGs: COG0761 Penicillin tolerance protein~HAMAP: LytB protein~InterPro IPR003451~KEGG: tde:TDE1096 hydroxymethylbutenyl pyrophosphate reductase~PFAM: LytB protein~PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase%3B~TIGRFAM: LytB protein~IMG reference gene:2504607819~PFAM: LytB protein~TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0906 Tresu_0907 Tresu_0907 Tresu_0907 959131 960201 + hypothetical protein KEGG: tde:TDE2028 OmpA family protein~SPTR: OmpA family protein%3B~IMG reference gene:2504607820 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0907 Tresu_0908 Tresu_0908 Tresu_0908 960205 963366 + OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE2028 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504607821~PFAM: OmpA family gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0908 Tresu_0909 Tresu_0909 Tresu_0909 963483 965282 - oligoendopeptidase F COGs: COG1164 Oligoendopeptidase F~InterPro IPR004438:IPR013647:IPR001567~KEGG: tde:TDE2639 oligoendopeptidase F~PFAM: Peptidase M3A/M3B%2C thimet/oligopeptidase F%3B Peptidase M3B%2C oligopeptidase F%2C N-terminal~SPTR: Oligoendopeptidase F%3B~TIGRFAM: Peptidase M3B%2C oligoendopeptidase F~IMG reference gene:2504607822~PFAM: Oligopeptidase F%3B Peptidase family M3~TIGRFAM: oligoendopeptidase F gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0909 Tresu_0910 Tresu_0910 Tresu_0910 965341 966693 + putative lipoprotein KEGG: tde:TDE1404 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504607823 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0910 Tresu_0911 Tresu_0911 Tresu_0911 966766 968700 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003439:IPR003593~KEGG: tde:TDE1403 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504607824~PFAM: ABC transporter gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0911 Tresu_0912 Tresu_0912 Tresu_0912 968804 969784 + UDP-glucose 4-epimerase COGs: COG1087 UDP-glucose 4-epimerase~InterPro IPR005886:IPR001509~KEGG: cte:CT0024 UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: UDP-glucose 4-epimerase~SPTR: UDP-glucose 4-epimerase%3B~TIGRFAM: UDP-glucose 4-epimerase~IMG reference gene:2504607825~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: UDP-glucose-4-epimerase gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0912 Tresu_0913 Tresu_0913 Tresu_0913 969861 971090 + acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase~InterPro IPR010182:IPR002933:IPR011650~KEGG: tde:TDE0068 diaminopimelate aminotransferase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation~SPTR: Peptidase%2C M20/M25/M40 family%3B~TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase~IMG reference gene:2504607826~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0913 Tresu_0914 Tresu_0914 Tresu_0914 971093 971890 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: ppn:Palpr_1598 gcn5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607827~PFAM: Acetyltransferase (GNAT) family gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0914 Tresu_0915 Tresu_0915 Tresu_0915 972022 972798 + hypothetical protein IMG reference gene:2504607828 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0915 Tresu_0916 Tresu_0916 Tresu_0916 978206 978403 + hypothetical protein IMG reference gene:2504607833 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0916 Tresu_0917 Tresu_0917 Tresu_0917 978417 980108 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594:IPR001789~KEGG: bpb:bpr_I0854 two component system histidine kinase/response regulator hybrid protein~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B Signal transduction response regulator%2C receiver domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B Signal transduction response regulator%2C receiver domain~SPTR: Two component system histidine kinase/response regulator hybrid protein%3B~IMG reference gene:2504607834~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B His Kinase A (phosphoacceptor) domain%3B Hpt domain gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0917 Tresu_0918 Tresu_0918 Tresu_0918 980167 980811 - hypothetical protein IMG reference gene:2504607835 gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0918 Tresu_0919 Tresu_0919 Tresu_0919 980798 981595 - response regulator receiver protein COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789~KEGG: bpb:bpr_I1049 response regulator domain-containing protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain~SPTR: Response regulator domain-containing protein%3B~IMG reference gene:2504607836~PFAM: Response regulator receiver domain gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0919 Tresu_0920 Tresu_0920 Tresu_0920 981708 982838 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504607837~PFAM: Transposase DDE domain gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0920 Tresu_0921 Tresu_0921 Tresu_0921 983203 984240 + AAA ATPase central domain protein COGs: COG0464 ATPase of the AAA+ class~InterPro IPR003959:IPR003593~KEGG: mmy:MSC_1062 AAA ATPase family protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: AAA ATPase%3B~IMG reference gene:2504607838~PFAM: ATPase family associated with various cellular activities (AAA) gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0921 Tresu_0922 Tresu_0922 Tresu_0922 984244 986460 + AAA - ATPase%2C putative KEGG: lwe:lwe0773 AAA - ATPase%2C putative~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607839~PFAM: Subtilase family gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0922 Tresu_0923 Tresu_0923 Tresu_0923 986564 987220 - hypothetical protein IMG reference gene:2504607840 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0923 Tresu_0924 Tresu_0924 Tresu_0924 987228 988334 - plasmid maintenance system antidote protein%2C XRE family COGs: COG3093 Plasmid maintenance system antidote protein~InterPro IPR013430:IPR001387:IPR010359~KEGG: kol:Kole_1307 XRE family plasmid maintenance system antidote protein~PFAM: Helix-turn-helix type 3%3B Protein of unknown function DUF955~SMART: Helix-turn-helix type 3~SPTR: Plasmid maintenance system antidote protein%2C XRE family%3B~TIGRFAM: Addiction module antidote protein%2C HigA~IMG reference gene:2504607841~PFAM: Helix-turn-helix%3B Domain of unknown function (DUF955)~TIGRFAM: addiction module antidote protein%2C HigA family gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0924 Tresu_0925 Tresu_0925 Tresu_0925 988339 988650 - plasmid maintenance system killer COGs: COG3549 Plasmid maintenance system killer protein~InterPro IPR007711~KEGG: kol:Kole_1308 plasmid maintenance system killer~PFAM: Plasmid maintenance system killer~SPTR: Plasmid maintenance system killer%3B~IMG reference gene:2504607842~PFAM: Plasmid maintenance system killer protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0925 Tresu_0926 Tresu_0926 Tresu_0926 988822 989385 + Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR007409~KEGG: clo:HMPREF0868_0494 HsdR family type I site-specific deoxyribonuclease~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal~SPTR: Type I site-specific deoxyribonuclease%2C HsdR family%3B~IMG reference gene:2504607843~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N) gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0926 Tresu_0927 Tresu_0927 Tresu_0927 989429 989593 - hypothetical protein IMG reference gene:2504607844 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0927 Tresu_0928 Tresu_0928 Tresu_0928 990061 991205 + pseudogene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0928 Tresu_0929 Tresu_0929 Tresu_0929 991498 992581 - pseudogene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0929 Tresu_0930 Tresu_0930 Tresu_0930 992768 993172 + helix-turn-helix domain protein InterPro IPR001387~KEGG: fsu:Fisuc_2499 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Toxin-antitoxin system%2C antitoxin component%2C Xre family%3B~IMG reference gene:2504607847~PFAM: Helix-turn-helix gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0930 Tresu_0931 Tresu_0931 Tresu_0931 993153 993818 + hypothetical protein IMG reference gene:2504607848 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0931 Tresu_0932 Tresu_0932 Tresu_0932 994113 994871 + hypothetical protein IMG reference gene:2504607849 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0932 Tresu_0933 Tresu_0933 Tresu_0933 995099 996655 + Glycosyl hydrolase family 32 domain protein COGs: COG1621 Beta-fructosidase (levanase/invertase)~InterPro IPR013148:IPR013189:IPR001362~KEGG: cbe:Cbei_3877 sucrose-6-phosphate hydrolase~PFAM: Glycosyl hydrolases family 32%2C N-terminal%3B Glycosyl hydrolase family 32%2C C-terminal~SMART: Glycoside hydrolase%2C family 32~SPTR: Sucrose-6-phosphate hydrolase%3B~IMG reference gene:2504607850~PFAM: Glycosyl hydrolases family 32 C terminal%3B Glycosyl hydrolases family 32 N-terminal domain gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0933 Tresu_0934 Tresu_0934 Tresu_0934 996674 997657 + Fructokinase COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: ere:EUBREC_0258 PfkB-type carbohydrate kinase family protein~PFAM: Carbohydrate/purine kinase~PRIAM: Fructokinase~SPTR: Sugar kinases%2C ribokinase family%3B~IMG reference gene:2504607851~PFAM: pfkB family carbohydrate kinase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0934 Tresu_0935 Tresu_0935 Tresu_0935 997794 998486 + hypothetical protein IMG reference gene:2504607852 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0935 Tresu_0936 Tresu_0936 Tresu_0936 998505 998996 - Ferritin Dps family protein COGs: COG1528 Ferritin-like protein~InterPro IPR008331~KEGG: tde:TDE0449 ferritin%2C putative~PFAM: Ferritin/Dps protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607853~PFAM: Ferritin-like domain gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0936 Tresu_0937 Tresu_0937 Tresu_0937 999015 999395 - Desulfoferrodoxin ferrous iron-binding region COGs: COG2033 Desulfoferrodoxin~InterPro IPR002742~KEGG: afn:Acfer_1201 desulfoferrodoxin ferrous iron-binding region~PFAM: Desulfoferrodoxin%2C ferrous iron-binding domain~SPTR: Desulfoferrodoxin ferrous iron-binding region%3B~IMG reference gene:2504607854~PFAM: Desulfoferrodoxin%2C N-terminal domain%3B Desulfoferrodoxin~TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain%3B desulfoferrodoxin%3B desulfoferrodoxin ferrous iron-binding domain gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0937 Tresu_0938 Tresu_0938 Tresu_0938 999684 1000566 + pseudogene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0938 Tresu_0939 Tresu_0939 Tresu_0939 1000756 1001887 - pseudogene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0939 Tresu_0940 Tresu_0940 Tresu_0940 1002452 1002661 + hypothetical protein IMG reference gene:2504607857 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0940 Tresu_0941 Tresu_0941 Tresu_0941 1002842 1005043 + hypothetical protein KEGG: mmq:MmarC5_1268 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607858 gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0941 Tresu_0942 Tresu_0942 Tresu_0942 1005047 1006564 + polysaccharide biosynthesis protein KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607859~PFAM: MatE gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0942 Tresu_0943 Tresu_0943 Tresu_0943 1006566 1007465 + hypothetical protein IMG reference gene:2504607860 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0943 Tresu_0944 Tresu_0944 Tresu_0944 1007462 1008487 + hypothetical protein KEGG: cpy:Cphy_0298 hypothetical protein~SPTR: Polysaccharide pyruvyl transferase%3B~IMG reference gene:2504607861~PFAM: Polysaccharide pyruvyl transferase gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0944 Tresu_0945 Tresu_0945 Tresu_0945 1008484 1009722 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit~InterPro IPR001450~KEGG: bvu:BVU_2392 F420H2-dehydrogenase%2C beta subunit~PFAM: 4Fe-4S binding domain~SPTR: Coenzyme F420-reducing hydrogenase%2C beta subunit%3B~IMG reference gene:2504607862~PFAM: 4Fe-4S binding domain%3B Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit C terminus gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0945 Tresu_0946 Tresu_0946 Tresu_0946 1009719 1010657 + polysaccharide deacetylase InterPro IPR002509~KEGG: ppn:Palpr_1138 polysaccharide deacetylase~PFAM: Polysaccharide deacetylase~SPTR: Polysaccharide deacetylase%3B~IMG reference gene:2504607863~PFAM: Polysaccharide deacetylase gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0946 Tresu_0947 Tresu_0947 Tresu_0947 1010669 1011760 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: tra:Trad_2725 glycosyl transferase group 1 protein~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyltransferase%2C group 1 family protein%3B~IMG reference gene:2504607864~PFAM: Glycosyl transferases group 1 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0947 Tresu_0948 Tresu_0948 Tresu_0948 1011757 1012743 + hypothetical protein KEGG: cts:Ctha_2070 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607865 gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0948 Tresu_0949 Tresu_0949 Tresu_0949 1012743 1013528 + glycosyltransferase%2C putative KEGG: pfl:PFL_5102 glycosyltransferase%2C putative~SPTR: Glycosyl transferase%3B~IMG reference gene:2504607866~PFAM: Glycosyl transferase family 2 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0949 Tresu_0950 Tresu_0950 Tresu_0950 1013530 1014612 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: chu:CHU_2891 A-glycosyltransferase~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2504607867~PFAM: Glycosyl transferases group 1 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0950 Tresu_0951 Tresu_0951 Tresu_0951 1014957 1015232 + hypothetical protein KEGG: pru:PRU_1734 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607868 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0951 Tresu_0952 Tresu_0952 Tresu_0952 1015225 1015446 + hypothetical protein KEGG: pru:PRU_1733 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607869 gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0952 Tresu_0953 Tresu_0953 Tresu_0953 1015449 1015730 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607870 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0953 Tresu_0954 Tresu_0954 Tresu_0954 1015797 1016939 + protein of unknown function DUF1972 COGs: COG0438 Glycosyltransferase~InterPro IPR015393:IPR001296~KEGG: pdi:BDI_1406 glycosyl transferase family protein~PFAM: Domain of unknown function DUF1972%3B Glycosyl transferase%2C group 1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607871~PFAM: Glycosyl transferases group 1%3B Domain of unknown function (DUF1972) gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0954 Tresu_0955 Tresu_0955 Tresu_0955 1017033 1019051 + hypothetical protein KEGG: fps:FP1531 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607872 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0955 Tresu_0956 Tresu_0956 Tresu_0956 1019059 1020114 + HNH nuclease InterPro IPR003615~KEGG: sun:SUN_2263 hypothetical protein~SMART: HNH nuclease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607873 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0956 Tresu_0957 Tresu_0957 Tresu_0957 1020221 1020751 - hypothetical protein KEGG: ssm:Spirs_4277 transcriptional regulator%2C MarR family~SPTR: Transcriptional regulator%2C MarR family%3B~IMG reference gene:2504607874 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0957 Tresu_0958 Tresu_0958 Tresu_0958 1020838 1020987 - hypothetical protein IMG reference gene:2504607875 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0958 Tresu_0959 Tresu_0959 Tresu_0959 1021406 1022152 + protein of unknown function DUF165 InterPro IPR003744~KEGG: ahe:Arch_1134 hypothetical protein~PFAM: Protein of unknown function DUF165~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607876~PFAM: Uncharacterized ACR%2C YhhQ family COG1738 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0959 Tresu_0960 Tresu_0960 Tresu_0960 1022149 1022838 + short-chain dehydrogenase/reductase SDR COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198~KEGG: efa:EF2881 3-ketoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607877~PFAM: short chain dehydrogenase gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0960 Tresu_0961 Tresu_0961 Tresu_0961 1022934 1023854 + hypothetical protein KEGG: sta:STHERM_c11560 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607878 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0961 Tresu_0962 Tresu_0962 Tresu_0962 1023871 1025967 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR001450:IPR007202~KEGG: ssm:Spirs_3433 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B 4Fe-4S binding domain%3B Putative Fe-S cluster~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504607879~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Putative Fe-S cluster%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0962 Tresu_0963 Tresu_0963 Tresu_0963 1026154 1027425 + Arginine biosynthesis bifunctional protein ArgJ COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase)~HAMAP: Arginine biosynthesis protein ArgJ~InterPro IPR002813~KEGG: cbe:Cbei_4518 arginine biosynthesis bifunctional protein ArgJ~PFAM: Arginine biosynthesis protein ArgJ~PRIAM: Amino-acid N-acetyltransferase~SPTR: Arginine biosynthesis bifunctional protein ArgJ%3B~TIGRFAM: Arginine biosynthesis protein ArgJ~IMG reference gene:2504607880~PFAM: ArgJ family~TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0963 Tresu_0964 Tresu_0964 Tresu_0964 1027443 1028345 + acetylglutamate kinase COGs: COG0548 Acetylglutamate kinase~InterPro IPR004662:IPR001048~KEGG: mta:Moth_2288 acetylglutamate kinase~PFAM: Aspartate/glutamate/uridylate kinase~PRIAM: Acetylglutamate kinase~SPTR: Acetylglutamate kinase%3B~TIGRFAM: Acetylglutamate kinase~IMG reference gene:2504607881~PFAM: Amino acid kinase family~TIGRFAM: acetylglutamate kinase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0964 Tresu_0965 Tresu_0965 Tresu_0965 1028354 1029511 + Acetylornithine/succinyldiaminopimelateaminotran sferase COGs: COG4992 Ornithine/acetylornithine aminotransferase~HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase~InterPro IPR004636:IPR005814~KEGG: ssm:Spirs_2235 acetylornithine and succinylornithine aminotransferase~PFAM: Aminotransferase class-III~PRIAM: Acetylornithine transaminase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Acetylornithine/succinylornithine aminotransferase~IMG reference gene:2504607882~PFAM: Aminotransferase class-III~TIGRFAM: acetylornithine and succinylornithine aminotransferases gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0965 Tresu_0966 Tresu_0966 Tresu_0966 1029625 1031346 + hypothetical protein KEGG: tpp:TPASS_0110 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607883 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0966 Tresu_0967 Tresu_0967 Tresu_0967 1031343 1032119 + Multi-copper polyphenol oxidoreductase%2C laccase COGs: COG1496 conserved hypothetical protein~InterPro IPR003730~KEGG: ssm:Spirs_1800 protein of unknown function DUF152~PFAM: Multi-copper polyphenol oxidoreductase%2C laccase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607884~PFAM: Multi-copper polyphenol oxidoreductase laccase~TIGRFAM: uncharacterized protein%2C YfiH family gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0967 Tresu_0968 Tresu_0968 Tresu_0968 1032233 1033597 + Argininosuccinate synthase COGs: COG0137 Argininosuccinate synthase~HAMAP: Argininosuccinate synthase~InterPro IPR001518~KEGG: bhy:BHWA1_01491 argininosuccinate lyase~PFAM: Argininosuccinate synthase~PRIAM: Argininosuccinate synthase~SPTR: Argininosuccinate synthase%3B~TIGRFAM: Argininosuccinate synthase~IMG reference gene:2504607885~PFAM: Arginosuccinate synthase~TIGRFAM: argininosuccinate synthase gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0968 Tresu_0969 Tresu_0969 Tresu_0969 1034136 1034885 + triosephosphate isomerase COGs: COG0149 Triosephosphate isomerase~InterPro IPR000652~KEGG: tde:TDE1236 triosephosphate isomerase~PFAM: Triosephosphate isomerase~PRIAM: Triose-phosphate isomerase~SPTR: Triosephosphate isomerase%3B~TIGRFAM: Triosephosphate isomerase~IMG reference gene:2504607886~PFAM: Triosephosphate isomerase~TIGRFAM: triosephosphate isomerase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0969 Tresu_0970 Tresu_0970 Tresu_0970 1034983 1035555 + Chromate transporter COGs: COG2059 Chromate transport protein ChrA~InterPro IPR003370~KEGG: tde:TDE1744 chromate transport protein~PFAM: Chromate transporter~SPTR: Chromate transport protein%3B~IMG reference gene:2504607887~PFAM: Chromate transporter gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0970 Tresu_0971 Tresu_0971 Tresu_0971 1035552 1036115 + Chromate transporter COGs: COG2059 Chromate transport protein ChrA~InterPro IPR003370~KEGG: tde:TDE1743 chromate transport protein~PFAM: Chromate transporter~SPTR: Chromate transport protein%3B~IMG reference gene:2504607888~PFAM: Chromate transporter gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0971 Tresu_0972 Tresu_0972 Tresu_0972 1036116 1037450 + vitamin B12 dependent methionine synthase activation region COGs: COG3894 Uncharacterized metal-binding protein~KEGG: tmt:Tmath_1046 vitamin B12 dependent methionine synthase activation region~SPTR: Vitamin B12 dependent methionine synthase activation region%3B~IMG reference gene:2504607889 gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0972 Tresu_0973 Tresu_0973 Tresu_0973 1037522 1038607 + Peptide chain release factor 1 COGs: COG0216 Protein chain release factor A~HAMAP: Peptide chain release factor 1~InterPro IPR004373:IPR005139:IPR000352~KEGG: tde:TDE2489 peptide chain release factor 1~PFAM: Peptide chain release factor class I/class II%3B Peptide chain release factor~SMART: Peptide chain release factor~SPTR: Peptide chain release factor 1%3B~TIGRFAM: Peptide chain release factor 1~IMG reference gene:2504607890~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 1 gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0973 Tresu_0974 Tresu_0974 Tresu_0974 1038616 1039548 + protein-(glutamine-N5) methyltransferase%2C release factor-specific COGs: COG2890 Methylase of polypeptide chain release factors~InterPro IPR004556:IPR019874:IPR007848~KEGG: tde:TDE2488 HemK family modification methylase~PFAM: Methyltransferase small~SPTR: Protein-(Glutamine-N5) methyltransferase%2C release factor-specific%3B~TIGRFAM: Protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B Modification methylase HemK~IMG reference gene:2504607891~PFAM: Methyltransferase small domain~TIGRFAM: HemK family putative methylases%3B protein-(glutamine-N5) methyltransferase%2C release factor-specific gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0974 Tresu_0975 Tresu_0975 Tresu_0975 1039526 1040815 + O-methyltransferase family 3 COGs: COG4122 O-methyltransferase~InterPro IPR002935~KEGG: ssp:SSP1147 putative O-methyltransferase~PFAM: O-methyltransferase%2C family 3~SPTR: O-methyltransferase family protein%3B~IMG reference gene:2504607892~PFAM: O-methyltransferase gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0975 Tresu_0976 Tresu_0976 Tresu_0976 1040812 1041957 - Lactaldehyde reductase COGs: COG1454 Alcohol dehydrogenase class IV~InterPro IPR001670~KEGG: vpr:Vpar_1772 lactaldehyde reductase~PFAM: Alcohol dehydrogenase%2C iron-type~PRIAM: Lactaldehyde reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607893~PFAM: Iron-containing alcohol dehydrogenase gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0976 Tresu_0977 Tresu_0977 Tresu_0977 1042102 1043034 + ABC-type metal ion transporter%2C periplasmic subunit COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127~KEGG: cce:Ccel_1156 periplasmic solute binding protein~PFAM: ABC transporter metal-binding lipoprotein~SPTR: Putative adhesion lipoprotein%3B~IMG reference gene:2504607894~PFAM: Periplasmic solute binding protein family gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0977 Tresu_0978 Tresu_0978 Tresu_0978 1043034 1043855 + ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: cce:Ccel_3414 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504607895~PFAM: ABC transporter gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0978 Tresu_0979 Tresu_0979 Tresu_0979 1043873 1044718 + ABC-type transporter%2C integral membrane subunit COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: dae:Dtox_0335 ABC-3 protein~PFAM: ABC-3~SPTR: Putative cation ABC transporter%2C permease protein%3B~IMG reference gene:2504607896~PFAM: ABC 3 transport family gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0979 Tresu_0980 Tresu_0980 Tresu_0980 1044720 1045367 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 COGs: COG0546 phosphatase~InterPro IPR006402:IPR006439:IPR005834~KEGG: ere:EUBREC_0355 putative phosphatase~PFAM: Haloacid dehalogenase-like hydrolase~PRIAM: Phosphoglycolate phosphatase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504607897~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0980 Tresu_0981 Tresu_0981 Tresu_0981 1045364 1047943 + MutS2 protein COGs: COG1193 Mismatch repair ATPase (MutS family)~HAMAP: DNA mismatch repair protein MutS%2C type 2~InterPro IPR000432:IPR002625:IPR005747~KEGG: tde:TDE1450 MutS2 family protein~PFAM: Smr protein/MutS2 C-terminal%3B DNA mismatch repair protein MutS%2C C-terminal~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B Smr protein/MutS2 C-terminal~SPTR: MutS2 protein%3B~IMG reference gene:2504607898~PFAM: MutS domain V%3B Smr domain~TIGRFAM: MutS2 family protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0981 Tresu_0982 Tresu_0982 Tresu_0982 1047940 1048461 - arginine repressor%2C ArgR COGs: COG1438 Arginine repressor~HAMAP: Arginine repressor~InterPro IPR001669:IPR020900:IPR020899~KEGG: ssm:Spirs_3243 arginine repressor%2C ArgR~PFAM: Arginine repressor%2C DNA-binding domain%3B Arginine repressor%2C C-terminal~SPTR: Arginine repressor%3B~manually curated~IMG reference gene:2504607899~PFAM: Arginine repressor%2C C-terminal domain%3B Arginine repressor%2C DNA binding domain~TIGRFAM: arginine repressor gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0982 Tresu_0983 Tresu_0983 Tresu_0983 1048472 1050877 - hypothetical protein KEGG: ssm:Spirs_2256 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607900 gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0983 Tresu_0984 Tresu_0984 Tresu_0984 1050998 1052587 + Glucose-6-phosphate isomerase COGs: COG0166 Glucose-6-phosphate isomerase~HAMAP: Phosphoglucose isomerase (PGI)~InterPro IPR001672~KEGG: bpb:bpr_I0035 glucose-6-phosphate isomerase GPI~PFAM: Phosphoglucose isomerase (PGI)~SPTR: Glucose-6-phosphate isomerase%3B~IMG reference gene:2504607901~PFAM: Phosphoglucose isomerase gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0984 Tresu_0985 Tresu_0985 Tresu_0985 1052655 1053548 - TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130~KEGG: tde:TDE2029 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~IMG reference gene:2504607902~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0985 Tresu_0986 Tresu_0986 Tresu_0986 1053764 1054252 - hypothetical protein KEGG: tde:TDE2305 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607904 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0986 Tresu_0987 Tresu_0987 Tresu_0987 1054272 1054436 - hypothetical protein IMG reference gene:2504607905 gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0987 Tresu_0988 Tresu_0988 Tresu_0988 1054440 1054802 - UPF0102 protein yraN COGs: COG0792 endonuclease distantly related to Holliday junction resolvase~HAMAP: Uncharacterised protein family UPF0102~InterPro IPR003509~KEGG: ssm:Spirs_1880 protein of unknown function UPF0102~PFAM: Uncharacterised protein family UPF0102~SPTR: HD domain protein%3B~IMG reference gene:2504607906~PFAM: Uncharacterised protein family UPF0102~TIGRFAM: TIGR00252 family protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0988 Tresu_0989 Tresu_0989 Tresu_0989 1054799 1055062 - type III secretion exporter COGs: COG1377 Flagellar biosynthesis pathway component FlhB~InterPro IPR006135~KEGG: tde:TDE2301 FlhB domain-containing protein~PFAM: Type III secretion exporter~SPTR: FlhB domain protein%3B~IMG reference gene:2504607907~PFAM: FlhB HrpN YscU SpaS Family gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0989 Tresu_0990 Tresu_0990 Tresu_0990 1055059 1056093 - hypothetical protein KEGG: tde:TDE0886 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607908 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0990 Tresu_0991 Tresu_0991 Tresu_0991 1056188 1056661 - 50S ribosomal protein L19 COGs: COG0335 Ribosomal protein L19~HAMAP: Ribosomal protein L19~InterPro IPR001857~KEGG: tde:TDE0885 50S ribosomal protein L19~PFAM: Ribosomal protein L19~SPTR: 50S ribosomal protein L19%3B~TIGRFAM: Ribosomal protein L19~IMG reference gene:2504607909~PFAM: Ribosomal protein L19~TIGRFAM: ribosomal protein L19%2C bacterial type gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0991 Tresu_0992 Tresu_0992 Tresu_0992 1056671 1057483 - tRNA (guanine-N(1)-)-methyltransferase COGs: COG0336 tRNA-(guanine-N1)-methyltransferase~HAMAP: tRNA (guanine-N1-)-methyltransferase%2C bacteria~InterPro IPR002649:IPR016009~KEGG: tde:TDE0884 tRNA (guanine-N(1)-)-methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase~PRIAM: tRNA (guanine-N(1)-)-methyltransferase~SPTR: tRNA (guanine-N(1)-)-methyltransferase%3B~TIGRFAM: tRNA (guanine-N1-)-methyltransferase%2C bacteria~IMG reference gene:2504607910~PFAM: tRNA (Guanine-1)-methyltransferase~TIGRFAM: tRNA (guanine-N1)-methyltransferase gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0992 Tresu_0993 Tresu_0993 Tresu_0993 1057489 1058094 - Ribosome maturation factor rimM COGs: COG0806 RimM protein required for 16S rRNA processing~HAMAP: 16S rRNA processing protein RimM~InterPro IPR011961:IPR002676~KEGG: sta:STHERM_c10550 16S rRNA processing protein RimM~PFAM: RimM protein~SPTR: 16S rRNA processing protein RimM%3B~TIGRFAM: 16S rRNA processing protein RimM~IMG reference gene:2504607911~PFAM: RimM N-terminal domain~TIGRFAM: 16S rRNA processing protein RimM gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0993 Tresu_0994 Tresu_0994 Tresu_0994 1058094 1058327 - UPF0109 protein COGs: COG1837 RNA-binding protein (contains KH domain)~HAMAP: Uncharacterised protein family UPF0109%2C bacterial~InterPro IPR020627~KEGG: tde:TDE0882 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607912 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0994 Tresu_0995 Tresu_0995 Tresu_0995 1058345 1058611 - 30S ribosomal protein S16 COGs: COG0228 Ribosomal protein S16~HAMAP: Ribosomal protein S16~InterPro IPR000307~KEGG: cbt:CLH_1197 30S ribosomal protein S16~PFAM: Ribosomal protein S16~SPTR: 30S ribosomal protein S16%3B~TIGRFAM: Ribosomal protein S16~IMG reference gene:2504607913~PFAM: Ribosomal protein S16~TIGRFAM: ribosomal protein S16 gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0995 Tresu_0996 Tresu_0996 Tresu_0996 1058857 1060041 + Galactokinase COGs: COG0153 Galactokinase~HAMAP: Galactokinase%2C bacterial~InterProIPR000705:IPR022963:IPR019539:IPR006204:IPR 013750~KEGG: tde:TDE2212 galactokinase~PFAM: Galactokinase galactose-binding domain%3B GHMP kinase%3B GHMP kinase%2C C-terminal~PRIAM: Galactokinase~SPTR: Galactokinase%3B~TIGRFAM: Galactokinase~IMG reference gene:2504607914~PFAM: Galactokinase galactose-binding signature%3B GHMP kinases C terminal%3B GHMP kinases N terminal domain~TIGRFAM: galactokinase gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0996 Tresu_0997 Tresu_0997 Tresu_0997 1060346 1061881 + 2%2C3 cyclic-nucleotide 2-phosphodiesterase COGs: COG1418 HD superfamily hydrolase~HAMAP: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase~InterProIPR017705:IPR006675:IPR004087:IPR003607:IPR 018111:IPR006674~KEGG: tde:TDE0237 hypothetical protein~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain%3B K Homology%2C type 1%2C subgroup~SMART: Metal-dependent phosphohydrolase%2C HD domain%3B K Homology~SPTR: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase%3B~TIGRFAM: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase%3B Uncharacterised protein family HDIG~IMG reference gene:2504607915~PFAM: KH domain%3B HD domain%3B Domain of unknown function (DUF3552)~TIGRFAM: conserved hypothetical protein YmdA/YtgF%3B uncharacterized domain HDIG gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0997 Tresu_0998 Tresu_0998 Tresu_0998 1061990 1063183 + hypothetical protein IMG reference gene:2504607916 gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0998 Tresu_0999 Tresu_0999 Tresu_0999 1063244 1064551 + hypothetical protein KEGG: cbt:CLH_2989 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607917 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_0999 Tresu_1000 Tresu_1000 Tresu_1000 1064564 1066180 + membrane bound O-acyl transferase MBOAT family protein COGs: COG1696 membrane protein involved in D-alanine export~InterPro IPR004299~KEGG: ere:EUBREC_2623 AlgI~PFAM: Membrane bound O-acyl transferase%2C MBOAT~SPTR: AlgI%3B~IMG reference gene:2504607918~PFAM: MBOAT family gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1000 Tresu_1001 Tresu_1001 Tresu_1001 1066213 1067718 + Phenylalanine racemase (ATP-hydrolyzing) COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein~InterPro IPR000873~KEGG: eel:EUBELI_00114 hypothetical protein~PFAM: AMP-dependent synthetase/ligase~PRIAM: Phenylalanine racemase (ATP-hydrolyzing)~SPTR: Non-ribosomal peptide synthetase modules and related proteins%3B~IMG reference gene:2504607919~PFAM: AMP-binding enzyme~TIGRFAM: amino acid adenylation domain gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1001 Tresu_1002 Tresu_1002 Tresu_1002 1067705 1068874 + Diaminopimelate decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR022644:IPR022643~KEGG: eel:EUBELI_00115 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2%2C C-terminal%3B Orn/DAP/Arg decarboxylase 2%2C N-terminal~PRIAM: Diaminopimelate decarboxylase~SPTR: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain protein%3B~IMG reference gene:2504607920~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1002 Tresu_1003 Tresu_1003 Tresu_1003 1068894 1069115 + hypothetical protein KEGG: eel:EUBELI_00116 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607921~PFAM: Phosphopantetheine attachment site gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1003 Tresu_1004 Tresu_1004 Tresu_1004 1069121 1070014 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: bde:BDP_2034 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504607922~PFAM: Glycosyl transferase family 2 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1004 Tresu_1005 Tresu_1005 Tresu_1005 1070115 1070327 - hypothetical protein KEGG: tde:TDE0466 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607923~PFAM: Protein of unknown function (DUF2281) gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1005 Tresu_1006 Tresu_1006 Tresu_1006 1070487 1070885 - hypothetical protein KEGG: naz:Aazo_4912 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607924 gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1006 Tresu_1007 Tresu_1007 Tresu_1007 1070973 1071305 - glycosyl transferase family 2 InterPro IPR001173~KEGG: naz:Aazo_4912 hypothetical protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607925~PFAM: Glycosyl transferase family 2 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1007 Tresu_1008 Tresu_1008 Tresu_1008 1071364 1072197 - glycosyl transferase family 2 InterPro IPR001173~KEGG: naz:Aazo_4912 hypothetical protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607926~PFAM: Glycosyl transferase family 2 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1008 Tresu_1009 Tresu_1009 Tresu_1009 1072447 1072551 + hypothetical protein IMG reference gene:2504607927 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1009 Tresu_1010 Tresu_1010 Tresu_1010 1072535 1072903 + WxcM-like domain-containing protein InterPro IPR008894~KEGG: ant:Arnit_2553 WxcM domain-containing protein~PFAM: WxcM-like%2C C-terminal~SPTR: WxcM domain protein%3B~IMG reference gene:2504607928~PFAM: WxcM-like%2C C-terminal gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1010 Tresu_1011 Tresu_1011 Tresu_1011 1072896 1073993 + Glutamine--scyllo-inositol transaminase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: phe:Phep_2016 glutamine--scyllo-inositol transaminase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~PRIAM: Glutamine--scyllo-inositol transaminase~SPTR: Sugar pyridoxal-phosphate-dependent aminotransferase%3B~IMG reference gene:2504607929~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1011 Tresu_1012 Tresu_1012 Tresu_1012 1074002 1074916 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: sli:Slin_0291 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Bactoprenol glucosyl transferase%3B~IMG reference gene:2504607930~PFAM: Glycosyl transferase family 2 gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1012 Tresu_1013 Tresu_1013 Tresu_1013 1074926 1077625 + Protein of unknown function%2C membrane YfhO COGs: COG4485 membrane protein~InterPro IPR018580~KEGG: eel:EUBELI_00940 hypothetical protein~PFAM: Uncharacterised protein family YfhO~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607931~PFAM: Bacterial membrane protein YfhO gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1013 Tresu_1014 Tresu_1014 Tresu_1014 1077618 1077974 + hypothetical protein KEGG: cbk:CLL_A3239 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607932~PFAM: EamA-like transporter family gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1014 Tresu_1015 Tresu_1015 Tresu_1015 1077978 1078322 + protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: elm:ELI_1406 EamA-like transporter family~PFAM: Drug/metabolite transporter~SPTR: EamA-like transporter family%3B~IMG reference gene:2504607933~PFAM: EamA-like transporter family gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1015 Tresu_1016 Tresu_1016 Tresu_1016 1078508 1081237 + Protein of unknown function%2C membrane YfhO COGs: COG4485 membrane protein~InterPro IPR018580~KEGG: eel:EUBELI_00940 hypothetical protein~PFAM: Uncharacterised protein family YfhO~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607934~PFAM: Bacterial membrane protein YfhO gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1016 Tresu_1017 Tresu_1017 Tresu_1017 1081312 1081449 - hypothetical protein IMG reference gene:2504607935 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1017 Tresu_1018 Tresu_1018 Tresu_1018 1081433 1081858 - hypothetical protein KEGG: bvu:BVU_0429 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607936 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1018 Tresu_1019 Tresu_1019 Tresu_1019 1082035 1084083 - TRAP transporter%2C 4TM/12TM fusion protein COGs: COG4666 TRAP-type uncharacterized transport system fused permease components~InterPro IPR011853:IPR010656~KEGG: brm:Bmur_0799 TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: TRAP transporter%2C 4TM/12TM fusion protein%3B~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~IMG reference gene:2504607937~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1019 Tresu_1020 Tresu_1020 Tresu_1020 1084100 1084615 - Domain of unknown function DUF1850 COGs: COG4729 conserved hypothetical protein~InterPro IPR015001~KEGG: brm:Bmur_0798 domain of unknown function DUF1850~PFAM: Protein of unknown function DUF1850~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607938~PFAM: Domain of unknown function (DUF1850) gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1020 Tresu_1021 Tresu_1021 Tresu_1021 1084630 1085580 - TRAP transporter solute receptor%2C TAXI family COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component~InterPro IPR011852:IPR015168~KEGG: brm:Bmur_0797 TRAP transporter solute receptor%2C TAXI family~SPTR: TRAP transporter solute receptor%2C TAXI family%3B~TIGRFAM: TRAP transporter solute receptor%2C TAXI family~IMG reference gene:2504607939~PFAM: NMT1/THI5 like~TIGRFAM: TRAP transporter solute receptor%2C TAXI family gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1021 Tresu_1022 Tresu_1022 Tresu_1022 1085686 1086648 - hypothetical protein KEGG: fsu:Fisuc_0710 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607940~PFAM: Glycosyl transferase family 8 gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1022 Tresu_1023 Tresu_1023 Tresu_1023 1086883 1087254 - hypothetical protein KEGG: ere:EUBREC_2495 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607941 gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1023 Tresu_1024 Tresu_1024 Tresu_1024 1087753 1087917 - pseudogene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1024 Tresu_1025 Tresu_1025 Tresu_1025 1088526 1089437 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607943 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1025 Tresu_1026 Tresu_1026 Tresu_1026 1089454 1089783 - hypothetical protein IMG reference gene:2504607944 gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1026 Tresu_1027 Tresu_1027 Tresu_1027 1090037 1090964 - pseudogene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1027 Tresu_1028 Tresu_1028 Tresu_1028 1091016 1092560 - polysaccharide biosynthesis protein KEGG: bpb:bpr_I2412 polysaccharide biosynthesis protein~SPTR: EpsT%3B~IMG reference gene:2504607946 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1028 Tresu_1029 Tresu_1029 Tresu_1029 1092572 1094275 - hypothetical protein KEGG: ade:Adeh_4294 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607947 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1029 Tresu_1030 Tresu_1030 Tresu_1030 1094606 1094776 + hypothetical protein IMG reference gene:2504607949 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1030 Tresu_1031 Tresu_1031 Tresu_1031 1094773 1095405 + hypothetical protein KEGG: fsu:Fisuc_2411 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607950 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1031 Tresu_1032 Tresu_1032 Tresu_1032 1095508 1097238 + Adenine deaminase COGs: COG1001 Adenine deaminase~HAMAP: Adenine deaminase~InterPro IPR006679:IPR006680~KEGG: bhy:BHWA1_01698 adenine deaminase~PFAM: Amidohydrolase 1~PRIAM: Adenine deaminase~SPTR: Adenine deaminase%3B~TIGRFAM: Adenine deaminase~IMG reference gene:2504607951~PFAM: Amidohydrolase family~TIGRFAM: adenine deaminase gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1032 Tresu_1033 Tresu_1033 Tresu_1033 1097291 1099696 + anti-sigma H sporulation factor%2C LonB COGs: COG0466 ATP-dependent Lon protease~InterProIPR004815:IPR003111:IPR003593:IPR003959:IPR 008269~KEGG: tde:TDE0670 ATP-dependent protease La~PFAM: Peptidase S16%2C Lon C-terminal%3B Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA-type%2C core~PRIAM: Endopeptidase La~SMART: Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent protease La%3B~TIGRFAM: Peptidase S16%2C ATP-dependent protease La~IMG reference gene:2504607952~PFAM: ATP-dependent protease La (LON) domain%3B ATPase family associated with various cellular activities (AAA)%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: ATP-dependent protease La gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1033 Tresu_1034 Tresu_1034 Tresu_1034 1099700 1100422 + hypothetical protein IMG reference gene:2504607953 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1034 Tresu_1035 Tresu_1035 Tresu_1035 1100726 1101224 + pseudogene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1035 Tresu_1036 Tresu_1036 Tresu_1036 1101224 1101973 + pseudogene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1036 Tresu_1037 Tresu_1037 Tresu_1037 1101976 1102206 - hypothetical protein IMG reference gene:2504607956 gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1037 Tresu_1038 Tresu_1038 Tresu_1038 1102551 1102895 + FHA domain containing protein COGs: COG1716 FOG: FHA domain~InterPro IPR000253~KEGG: sta:STHERM_c06930 hypothetical protein~PFAM: Forkhead-associated (FHA) domain~SMART: Forkhead-associated (FHA) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607959~PFAM: FHA domain gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1038 Tresu_1039 Tresu_1039 Tresu_1039 1102897 1103913 + hypothetical protein KEGG: sta:STHERM_c06960 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607960 gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1039 Tresu_1040 Tresu_1040 Tresu_1040 1103933 1105564 + serine/threonine protein kinase COGs: COG0515 Serine/threonine protein kinase~InterPro IPR002290:IPR020635:IPR017442~KEGG: sta:STHERM_c06970 serine/threonine-protein kinase Sps1~PFAM: Serine/threonine-protein kinase-like domain~PRIAM: Non-specific protein-tyrosine kinase~SMART: Serine/threonine-protein kinase domain%3B Tyrosine-protein kinase%2C catalytic domain~SPTR: Serine/threonine-protein kinase Sps1%3B~IMG reference gene:2504607961~PFAM: Protein kinase domain gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1040 Tresu_1041 Tresu_1041 Tresu_1041 1105640 1106431 + hypothetical protein IMG reference gene:2504607962 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1041 Tresu_1042 Tresu_1042 Tresu_1042 1106409 1107854 - nicotinate phosphoribosyltransferase COGs: COG1488 Nicotinic acid phosphoribosyltransferase~InterPro IPR006405:IPR015977~KEGG: tde:TDE0174 nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like~SPTR: Nicotinate phosphoribosyltransferase%3B~TIGRFAM: Nicotinate phosphoribosyltransferase putative~IMG reference gene:2504607963~PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family~TIGRFAM: putative nicotinate phosphoribosyltransferase gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1042 Tresu_1043 Tresu_1043 Tresu_1043 1107969 1108796 - short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR002198~KEGG: csh:Closa_1973 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR~SPTR: Oxidoreductase%2C short-chain dehydrogenase/reductase family%3B~IMG reference gene:2504607964~PFAM: short chain dehydrogenase gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1043 Tresu_1044 Tresu_1044 Tresu_1044 1108878 1109969 + glycoside hydrolase family 3 domain protein COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR001764~KEGG: tde:TDE1221 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~SPTR: Glycosyl hydrolase%2C family 3%3B~IMG reference gene:2504607965~PFAM: Glycosyl hydrolase family 3 N terminal domain gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1044 Tresu_1045 Tresu_1045 Tresu_1045 1109992 1110825 + Fmu (Sun) domain protein COGs: COG0144 tRNA and rRNA cytosine-C5-methylase~InterPro IPR001678~KEGG: tde:TDE2162 NOL1/NOP2/sun family protein~PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p~SPTR: NOL1/NOP2/sun family protein%3B~IMG reference gene:2504607966~PFAM: NOL1/NOP2/sun family gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1045 Tresu_1046 Tresu_1046 Tresu_1046 1110921 1112177 + metal dependent phosphohydrolase with GAF sensor COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR003018:IPR003607:IPR006674~KEGG: tde:TDE2659 GAF domain/HD domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain%3B GAF~SMART: Metal-dependent phosphohydrolase%2C HD domain%3B GAF~SPTR: GAF domain/HD domain protein%3B~IMG reference gene:2504607967~PFAM: HD domain%3B GAF domain gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1046 Tresu_1047 Tresu_1047 Tresu_1047 1112170 1112622 - protein of unknown function DUF188 COGs: COG1671 conserved hypothetical protein~InterPro IPR003791~KEGG: tde:TDE2151 hypothetical protein~PFAM: Protein of unknown function DUF188~SPTR: UPF0178 protein TDE_2151%3B~IMG reference gene:2504607968~PFAM: Uncharacterized BCR%2C YaiI/YqxD family COG1671 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1047 Tresu_1048 Tresu_1048 Tresu_1048 1112619 1112921 - hypothetical protein KEGG: tpp:TPASS_0846 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607969~PFAM: Cell division protein ZapA gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1048 Tresu_1049 Tresu_1049 Tresu_1049 1112942 1113415 - hypothetical protein KEGG: ssm:Spirs_2593 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504607970 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1049 Tresu_1050 Tresu_1050 Tresu_1050 1113419 1113778 - 50S ribosomal protein L20 COGs: COG0292 Ribosomal protein L20~HAMAP: Ribosomal protein L20~InterPro IPR005813~KEGG: sta:STHERM_c07790 50S ribosomal protein L20~PFAM: Ribosomal protein L20~SPTR: 50S ribosomal protein L20%3B~TIGRFAM: Ribosomal protein L20~IMG reference gene:2504607971~PFAM: Ribosomal protein L20~TIGRFAM: ribosomal protein L20 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1050 Tresu_1051 Tresu_1051 Tresu_1051 1113794 1113994 - 50S ribosomal protein L35 HAMAP: Ribosomal protein L35%2C non-mitochondrial~InterPro IPR001706:IPR021137~KEGG: tpp:TPASS_0849 50S ribosomal protein L35~PFAM: Ribosomal protein L35~SPTR: 50S ribosomal protein L35%3B~TIGRFAM: Ribosomal protein L35%2C non-mitochondrial~IMG reference gene:2504607972~PFAM: Ribosomal protein L35~TIGRFAM: ribosomal protein L35 gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1051 Tresu_1052 Tresu_1052 Tresu_1052 1113999 1114529 - Translation initiation factor IF-3 COGs: COG0290 Translation initiation factor 3 (IF-3)~HAMAP: Translation initiation factor 3~InterPro IPR001288:IPR019814:IPR019815~KEGG: tpp:TPASS_0850 translation initiation factor IF-3~PFAM: Translation initiation factor 3%2C N-terminal%3B Translation initiation factor 3%2C C-terminal~SPTR: Translation initiation factor IF-3%3B~TIGRFAM: Translation initiation factor 3~IMG reference gene:2504607973~PFAM: Translation initiation factor IF-3%2C C-terminal domain%3B Translation initiation factor IF-3%2C N-terminal domain~TIGRFAM: translation initiation factor IF-3 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1052 Tresu_1053 Tresu_1053 Tresu_1053 1114585 1115238 - hypothetical protein IMG reference gene:2504607974 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1053 Tresu_1054 Tresu_1054 Tresu_1054 1115372 1116376 - fructose-1%2C6-bisphosphate aldolase%2C class II COGs: COG0191 Fructose/tagatose bisphosphate aldolase~InterPro IPR000771:IPR011289~KEGG: tpp:TPASS_0662 fructose-bisphosphate aldolase~PFAM: Ketose-bisphosphate aldolase%2C class-II~PRIAM: Fructose-bisphosphate aldolase~SPTR: Fructose-1%2C6-bisphosphate aldolase%2C class II%3B~TIGRFAM: Fructose-1%2C6-bisphosphate aldolase%2C class 2%3B Ketose-bisphosphate aldolase%2C class-II~IMG reference gene:2504607975~PFAM: Fructose-bisphosphate aldolase class-II~TIGRFAM: ketose-bisphosphate aldolases%3B fructose-1%2C6-bisphosphate aldolase%2C class II%2C various bacterial and amitochondriate protist gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1054 Tresu_1055 Tresu_1055 Tresu_1055 1116603 1117337 + flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tpp:TPASS_0663 possible outer membrane protein~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Outer membrane protein%3B~IMG reference gene:2504607976~PFAM: Flagellar filament outer layer protein Flaa gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1055 Tresu_1056 Tresu_1056 Tresu_1056 1117358 1118083 + flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tpp:TPASS_0664 flagellar filament outer layer protein~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Flagellar filament outer layer protein%3B~IMG reference gene:2504607977~PFAM: Flagellar filament outer layer protein Flaa gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1056 Tresu_1057 Tresu_1057 Tresu_1057 1118176 1119108 + Mannan endo-1%2C4-beta-mannosidase COGs: COG4124 Beta-mannanase~InterPro IPR022790~KEGG: ccb:Clocel_1947 mannan endo-1%2C4-beta-mannosidase~PFAM: Endoglucanase H/Glycosyl hydrolase family 26~PRIAM: Mannan endo-1%2C4-beta-mannosidase~SPTR: Beta-mannanase%3B~IMG reference gene:2504607978~PFAM: Glycosyl hydrolase family 26 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1057 Tresu_1058 Tresu_1058 Tresu_1058 1119144 1119764 + Holliday junction ATP-dependent DNA helicase ruvA COGs: COG0632 Holliday junction resolvasome DNA-binding subunit~HAMAP: Bacterial DNA recombination protein RuvA~InterProIPR000085:IPR003583:IPR013849:IPR000445:IPR 011114~KEGG: tde:TDE1863 Holliday junction DNA helicase RuvA~PFAM: DNA helicase%2C Holliday junction RuvA type%2C domain I%2C bacterial%3B Helix-hairpin-helix motif%3B DNA helicase%2C Holliday junction RuvA type%2C domain III%2C C-terminal~SPTR: Holliday junction ATP-dependent DNA helicase ruvA%3B~TIGRFAM: Bacterial DNA recombination protein RuvA~IMG reference gene:2504607979~PFAM: RuvA%2C C-terminal domain%3B RuvA N terminal domain%3B Helix-hairpin-helix motif~TIGRFAM: Holliday junction DNA helicase%2C RuvA subunit gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1058 Tresu_1059 Tresu_1059 Tresu_1059 1119761 1120903 + Holliday junction ATP-dependent DNA helicase ruvB COGs: COG2255 Holliday junction resolvasome helicase subunit~HAMAP: DNA helicase%2C Holliday junction RuvB type~InterProIPR004605:IPR003593:IPR008824:IPR003959:IPR 008823~KEGG: tde:TDE1914 Holliday junction DNA helicase RuvB~PFAM: DNA helicase%2C Holliday junction RuvB type%2C C-terminal%3B ATPase%2C AAA-type%2C core%3B DNA helicase%2C Holliday junction RuvB type%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: Holliday junction ATP-dependent DNA helicase ruvB%3B~TIGRFAM: DNA helicase%2C Holliday junction RuvB type~IMG reference gene:2504607980~PFAM: Holliday junction DNA helicase ruvB C-terminus%3B Holliday junction DNA helicase ruvB N-terminus~TIGRFAM: Holliday junction DNA helicase%2C RuvB subunit gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1059 Tresu_1060 Tresu_1060 Tresu_1060 1120933 1121973 + S-adenosylmethionine:tRNAribosyltransferase-isom erase COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)~HAMAP: Queuosine biosynthesis protein~InterPro IPR003699~KEGG: tde:TDE2451 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~PFAM: Queuosine biosynthesis protein~SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase%3B~TIGRFAM: Queuosine biosynthesis protein~IMG reference gene:2504607981~PFAM: Queuosine biosynthesis protein~TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1060 Tresu_1061 Tresu_1061 Tresu_1061 1122004 1122849 - molybdopterin dehydrogenase FAD-binding protein COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs~InterPro IPR002346~KEGG: tde:TDE0728 FAD-binding protein%2C putative~PFAM: Molybdopterin dehydrogenase%2C FAD-binding~SPTR: Putative FAD-binding protein%3B~IMG reference gene:2504607982~PFAM: FAD binding domain in molybdopterin dehydrogenase gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1061 Tresu_1062 Tresu_1062 Tresu_1062 1122794 1123285 - ferredoxin COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs~InterPro IPR001041~KEGG: tde:TDE0727 iron-sulfur cluster-binding protein~PFAM: Ferredoxin~SPTR: Iron-sulfur cluster-binding protein%3B~IMG reference gene:2504607983~PFAM: 2Fe-2S iron-sulfur cluster binding domain%3B [2Fe-2S] binding domain gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1062 Tresu_1063 Tresu_1063 Tresu_1063 1123257 1125575 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs~InterPro IPR008274~KEGG: tde:TDE0726 aldehyde oxidase and xanthine dehydrogenase family protein~PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding~SPTR: Aldehyde oxidase and xanthine dehydrogenase family protein%3B~IMG reference gene:2504607984~PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase%3B Aldehyde oxidase and xanthine dehydrogenase%2C a/b hammerhead domain gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1063 Tresu_1064 Tresu_1064 Tresu_1064 1125568 1126767 - DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: tde:TDE0725 exopolysaccharide biosynthesis protein~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Exopolysaccharide biosynthesis protein%3B~IMG reference gene:2504607985~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1064 Tresu_1065 Tresu_1065 Tresu_1065 1126767 1128293 - polysaccharide biosynthesis protein CapD COGs: COG1086 nucleoside-diphosphate sugar epimerase~InterPro IPR003869~KEGG: tde:TDE0714 capsular polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein CapD-like~SPTR: Capsular polysaccharide biosynthesis protein%3B~IMG reference gene:2504607986~PFAM: CoA binding domain%3B Polysaccharide biosynthesis protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1065 Tresu_1066 Tresu_1066 Tresu_1066 1128367 1128825 - Transcriptional repressor nrdR COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains~HAMAP: Ribonucleotide reductase regulator NrdR-like~InterPro IPR003796:IPR005144~KEGG: tde:TDE1330 transcriptional regulator NrdR~PFAM: ATP-cone~SPTR: Transcriptional repressor NrdR%3B~TIGRFAM: Ribonucleotide reductase regulator NrdR-like~IMG reference gene:2504607987~PFAM: ATP cone domain~TIGRFAM: transcriptional regulator NrdR gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1066 Tresu_1067 Tresu_1067 Tresu_1067 1134480 1135016 - hypothetical protein IMG reference gene:2504607992 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1067 Tresu_1068 Tresu_1068 Tresu_1068 1135013 1136830 - Apolipoprotein N-acyltransferase COGs: COG0815 Apolipoprotein N-acyltransferase~HAMAP: Apolipoprotein N-acyltransferase~InterPro IPR004563~KEGG: tde:TDE2299 apolipoprotein N-acyltransferase~SPTR: Apolipoprotein N-acyltransferase 2%3B~TIGRFAM: Apolipoprotein N-acyltransferase~IMG reference gene:2504607993~TIGRFAM: apolipoprotein N-acyltransferase gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1068 Tresu_1069 Tresu_1069 Tresu_1069 1136843 1138057 + Galactokinase COGs: COG0153 Galactokinase~InterPro IPR019539:IPR006204~KEGG: tde:TDE2298 galactokinase%2C putative~PFAM: Galactokinase galactose-binding domain%3B GHMP kinase~PRIAM: Galactokinase~SPTR: Galactokinase%3B~IMG reference gene:2504607994~PFAM: Galactokinase galactose-binding signature%3B GHMP kinases N terminal domain gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1069 Tresu_1070 Tresu_1070 Tresu_1070 1138054 1138860 + Multifunctional protein surE COGs: COG0496 acid phosphatase~HAMAP: Survival protein SurE-like phosphatase/nucleotidase~InterPro IPR002828~KEGG: ssm:Spirs_3174 stationary-phase survival protein SurE~PFAM: Survival protein SurE-like phosphatase/nucleotidase~SPTR: 5'-nucleotidase surE%3B~TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase~IMG reference gene:2504607995~PFAM: Survival protein SurE~TIGRFAM: 5'/3'-nucleotidase SurE gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1070 Tresu_1071 Tresu_1071 Tresu_1071 1138872 1139570 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: tde:TDE2297 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504607996~PFAM: Tetratricopeptide repeat gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1071 Tresu_1072 Tresu_1072 Tresu_1072 1139570 1141618 + NHL repeat containing protein InterPro IPR001258~KEGG: tde:TDE2296 hypothetical protein~PFAM: NHL repeat~SPTR: Putative lipoprotein%3B~IMG reference gene:2504607997 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1072 Tresu_1073 Tresu_1073 Tresu_1073 1141569 1142786 - DNA polymerase IV COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair~HAMAP: DNA polymerase IV~InterPro IPR022880:IPR001126~KEGG: tde:TDE0963 DNA polymerase IV~PFAM: DNA-repair protein%2C UmuC-like~PRIAM: DNA-directed DNA polymerase~SPTR: DNA polymerase IV%3B~IMG reference gene:2504607998~PFAM: impB/mucB/samB family C-terminal%3B impB/mucB/samB family%3B IMS family HHH motif gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1073 Tresu_1074 Tresu_1074 Tresu_1074 1142776 1144767 - hypothetical protein KEGG: tde:TDE0962 hypothetical protein~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504607999 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1074 Tresu_1075 Tresu_1075 Tresu_1075 1145114 1146280 + hypothetical protein KEGG: tde:TDE1128 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608000 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1075 Tresu_1076 Tresu_1076 Tresu_1076 1146284 1146910 + hypothetical protein IMG reference gene:2504608001 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1076 Tresu_1077 Tresu_1077 Tresu_1077 1146934 1147665 + tRNA (guanine-N(7)-)-methyltransferase COGs: COG0220 S-adenosylmethionine-dependent methyltransferase~HAMAP: tRNA (guanine-N-7) methyltransferase~InterPro IPR003358~KEGG: tde:TDE1130 methyltransferase%2C putative~PFAM: tRNA (guanine-N-7) methyltransferase~SPTR: tRNA (guanine-N(7)-)-methyltransferase%3B~TIGRFAM: tRNA (guanine-N-7) methyltransferase~IMG reference gene:2504608002~PFAM: Putative methyltransferase~TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1077 Tresu_1078 Tresu_1078 Tresu_1078 1147670 1149625 + DNA ligase COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)~HAMAP: NAD-dependent DNA ligase~InterProIPR001679:IPR013840:IPR001357:IPR013839:IPR 004150~KEGG: tde:TDE1538 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase%2C adenylation%3B NAD-dependent DNA ligase%2C OB-fold%3B BRCT~SMART: NAD-dependent DNA ligase%2C N-terminal%3B BRCT~SPTR: DNA ligase%2C NAD-dependent%3B~TIGRFAM: NAD-dependent DNA ligase~IMG reference gene:2504608003~PFAM: NAD-dependent DNA ligase OB-fold domain%3B NAD-dependent DNA ligase adenylation domain%3B BRCA1 C Terminus (BRCT) domain~TIGRFAM: DNA ligase%2C NAD-dependent gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1078 Tresu_1079 Tresu_1079 Tresu_1079 1149622 1150602 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: tde:TDE2189 M23/M37 peptidase domain-containing protein~PFAM: Peptidase M23~SPTR: M23/M37 peptidase domain protein%3B~IMG reference gene:2504608004~PFAM: Peptidase family M23 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1079 Tresu_1080 Tresu_1080 Tresu_1080 1150632 1152797 - single-stranded-DNA-specific exonuclease RecJ COGs: COG0608 Single-stranded DNA-specific exonuclease~InterPro IPR004610:IPR001667:IPR003156~KEGG: tde:TDE2190 single-stranded-DNA-specific exonuclease RecJ~PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1~SPTR: Single-stranded-DNA-specific exonuclease RecJ%3B~TIGRFAM: Bacterial RecJ exonuclease~IMG reference gene:2504608005~PFAM: DHHA1 domain%3B DHH family~TIGRFAM: single-stranded-DNA-specific exonuclease RecJ gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1080 Tresu_1081 Tresu_1081 Tresu_1081 1152797 1154122 - pyrimidine-nucleoside phosphorylase COGs: COG0213 Thymidine phosphorylase~InterPro IPR018090:IPR013102:IPR017459:IPR000312~KEGG: tde:TDE2191 pyrimidine-nucleoside phosphorylase~PFAM: Glycosyl transferase%2C family 3%3B Glycosyl transferase%2C family 3%2C N-terminal%3B Pyrimidine nucleoside phosphorylase%2C C-terminal~PRIAM: Thymidine phosphorylase~SMART: Pyrimidine nucleoside phosphorylase%2C C-terminal~SPTR: Pyrimidine-nucleoside phosphorylase%3B~TIGRFAM: Pyrimidine-nucleoside phosphorylase%2C bacterial/eukaryotic~IMG reference gene:2504608006~PFAM: Glycosyl transferase family%2C a/b domain%3B Pyrimidine nucleoside phosphorylase C-terminal domain%3B Glycosyl transferase family%2C helical bundle domain~TIGRFAM: pyrimidine-nucleoside phosphorylase gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1081 Tresu_1082 Tresu_1082 Tresu_1082 1154476 1155198 + hypothetical protein KEGG: tde:TDE2259 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608007 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1082 Tresu_1083 Tresu_1083 Tresu_1083 1155295 1156047 - DNA repair protein recO COGs: COG1381 Recombinational DNA repair protein (RecF pathway)~HAMAP: Recombination protein O%2C RecO~InterPro IPR003717~KEGG: tde:TDE0436 recombination protein O~PFAM: Recombination protein O%2C RecO~SPTR: Recombination protein O%3B~TIGRFAM: Recombination protein O%2C RecO~IMG reference gene:2504608008~PFAM: Recombination protein O C terminal%3B Recombination protein O N terminal~TIGRFAM: DNA repair protein RecO gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1083 Tresu_1084 Tresu_1084 Tresu_1084 1156102 1156227 + pseudogene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1084 Tresu_1085 Tresu_1085 Tresu_1085 1156362 1156577 - hypothetical protein IMG reference gene:2504608010 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1085 Tresu_1086 Tresu_1086 Tresu_1086 1156619 1157749 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504608011~PFAM: Transposase DDE domain gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1086 Tresu_1087 Tresu_1087 Tresu_1087 1157876 1158790 - hypothetical protein IMG reference gene:2504608012 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1087 Tresu_1088 Tresu_1088 Tresu_1088 1158800 1159429 - hypothetical protein IMG reference gene:2504608013~PFAM: CRISPR-associated protein (cas_TM1812) gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1088 Tresu_1089 Tresu_1089 Tresu_1089 1159442 1159855 - hypothetical protein IMG reference gene:2504608014 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1089 Tresu_1090 Tresu_1090 Tresu_1090 1159938 1163309 - Type I site-specific deoxyribonuclease COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR014001:IPR007409:IPR006935:IPR001650~KEGG: pru:PRU_2890 putative type I restriction-modification system%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Helicase%2C C-terminal~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase%2C N-terminal~SPTR: Putative type I restriction-modification system%2C R subunit%3B~IMG reference gene:2504608015~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)%3B Helicase conserved C-terminal domain%3B Domain of unknown function (DUF3559)%3B Type III restriction enzyme%2C res subunit gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1090 Tresu_1091 Tresu_1091 Tresu_1091 1163328 1163531 - hypothetical protein KEGG: lba:Lebu_0827 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608016 gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1091 Tresu_1092 Tresu_1092 Tresu_1092 1163687 1163977 - hypothetical protein KEGG: lba:Lebu_0828 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608017 gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1092 Tresu_1093 Tresu_1093 Tresu_1093 1163950 1164528 - restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: bal:BACI_c43150 type I restriction modification enzyme protein S~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608018~PFAM: Type I restriction modification DNA specificity domain gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1093 Tresu_1094 Tresu_1094 Tresu_1094 1164532 1165524 - integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR004107:IPR002104~KEGG: fma:FMG_1375 putative integrase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Possible bacteriophage integrase/recombinase%3B~IMG reference gene:2504608019~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1094 Tresu_1095 Tresu_1095 Tresu_1095 1165571 1166209 - restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: axy:AXYL_06350 type I restriction enzyme StySPI specificity protein~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Type I restriction enzyme StySPI specificity protein%3B~IMG reference gene:2504608020~PFAM: Type I restriction modification DNA specificity domain gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1095 Tresu_1096 Tresu_1096 Tresu_1096 1166206 1167204 - integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR004107:IPR002104~KEGG: fma:FMG_1375 putative integrase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Possible bacteriophage integrase/recombinase%3B~IMG reference gene:2504608021~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1096 Tresu_1097 Tresu_1097 Tresu_1097 1167251 1168264 - restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: bal:BACI_c43150 type I restriction modification enzyme protein S~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608022~PFAM: Type I restriction modification DNA specificity domain gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1097 Tresu_1098 Tresu_1098 Tresu_1098 1168261 1169682 - putative transcriptional regulator COGs: COG2865 transcriptional regulator protein~InterPro IPR007421~KEGG: ere:EUBREC_0652 ATP-dependent DNA helicase RecG-related protein~PFAM: ATPase%2C AAA-4~SPTR: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen%3B~IMG reference gene:2504608023~PFAM: Divergent AAA domain gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1098 Tresu_1099 Tresu_1099 Tresu_1099 1169686 1171212 - N-6 DNA methylase COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: lrf:LAR_1347 type I restriction-modification system M subunit~PFAM: DNA methylase%2C adenine-specific~SPTR: Type I site-specific deoxyribonuclease%3B~IMG reference gene:2504608024~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1099 Tresu_1100 Tresu_1100 Tresu_1100 1171258 1171662 - hypothetical protein IMG reference gene:2504608025 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1100 Tresu_1101 Tresu_1101 Tresu_1101 1172035 1173396 - RmuC-domain protein COGs: COG1322 conserved hypothetical protein~InterPro IPR003798~KEGG: aps:CFPG_608 DNA recombination protein RmuC homolog~PFAM: DNA recombination RmuC~SPTR: DNA recombination protein rmuC homolog%3B~IMG reference gene:2504608026~PFAM: RmuC family gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1101 Tresu_1102 Tresu_1102 Tresu_1102 1173489 1173947 - hypothetical protein SPTR: DNA replication protein%3B~IMG reference gene:2504608027 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1102 Tresu_1103 Tresu_1103 Tresu_1103 1174163 1174657 - pseudogene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1103 Tresu_1104 Tresu_1104 Tresu_1104 1174654 1174845 - hypothetical protein IMG reference gene:2504608029 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1104 Tresu_1105 Tresu_1105 Tresu_1105 1175517 1175672 - protein of unknown function DUF1778 InterPro IPR014795~PFAM: Protein of unknown function DUF1778~IMG reference gene:2504608030~PFAM: Protein of unknown function (DUF1778) gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1105 Tresu_1106 Tresu_1106 Tresu_1106 1175811 1176299 + restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: tde:TDE2743 type I restriction-modification system%2C S subunit%2C truncation~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Type I restriction-modification system%2C S subunit%2C truncation%3B~manually curated~IMG reference gene:2504608031~PFAM: Type I restriction modification DNA specificity domain gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1106 Tresu_1107 Tresu_1107 Tresu_1107 1176270 1176827 - restriction modification system DNA specificity domain protein InterPro IPR000055~KEGG: tde:TDE2744 type I restriction-modification system%2C S subunit~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Type I restriction-modification system%2C S subunit%3B~IMG reference gene:2504608032~PFAM: Type I restriction modification DNA specificity domain gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1107 Tresu_1108 Tresu_1108 Tresu_1108 1176855 1177325 - hypothetical protein KEGG: glo:Glov_2990 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608033 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1108 Tresu_1109 Tresu_1109 Tresu_1109 1177315 1178466 - abortive infection protein KEGG: glo:Glov_2991 abortive infection protein~SPTR: Abortive infection protein%3B~IMG reference gene:2504608034 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1109 Tresu_1110 Tresu_1110 Tresu_1110 1178568 1179389 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR002104~KEGG: tde:TDE2742 phage integrase family site specific recombinase~PFAM: Integrase%2C catalytic core%2C phage~SPTR: Site-specific recombinase%2C phage integrase family%3B~IMG reference gene:2504608035~PFAM: Phage integrase family gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1110 Tresu_1111 Tresu_1111 Tresu_1111 1179434 1179652 - hypothetical protein IMG reference gene:2504608036 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1111 Tresu_1112 Tresu_1112 Tresu_1112 1179645 1180652 - protein of unknown function DUF114 InterPro IPR002825~KEGG: dly:Dehly_0078 hypothetical protein~PFAM: Peptidase S49%2C serine-peptidase prokaryotes~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608037~PFAM: Serine dehydrogenase proteinase gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1112 Tresu_1113 Tresu_1113 Tresu_1113 1180717 1182189 - restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: cph:Cpha266_1398 restriction modification system DNA specificity subunit~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Type I restriction enzyme EcoAI specificity protein%3B~IMG reference gene:2504608038~PFAM: Type I restriction modification DNA specificity domain gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1113 Tresu_1114 Tresu_1114 Tresu_1114 1182194 1183636 - Site-specific DNA-methyltransferase (adenine-specific) COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: tde:TDE2746 type I restriction-modification system%2C M subunit~PFAM: DNA methylase%2C adenine-specific~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: Type I restriction-modification system%2C M subunit%3B~IMG reference gene:2504608039~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1114 Tresu_1115 Tresu_1115 Tresu_1115 1183639 1186446 - Type I site-specific deoxyribonuclease COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR014001:IPR007409:IPR006935~KEGG: tde:TDE2747 type I restriction-modification system%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase%2C N-terminal~SPTR: Type I restriction-modification system%2C R subunit%3B~IMG reference gene:2504608040~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)%3B Domain of unknown function (DUF3559)%3B Type III restriction enzyme%2C res subunit gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1115 Tresu_1116 Tresu_1116 Tresu_1116 1187121 1187585 + pseudogene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1116 Tresu_1117 Tresu_1117 Tresu_1117 1187774 1188958 - hypothetical protein KEGG: elm:ELI_1911 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608042~PFAM: HipA-like C-terminal domain gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1117 Tresu_1118 Tresu_1118 Tresu_1118 1188955 1190571 - pseudogene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1118 Tresu_1119 Tresu_1119 Tresu_1119 1190767 1191186 + flagellar basal-body rod protein FlgB COGs: COG1815 Flagellar basal body protein~InterPro IPR006300~KEGG: tde:TDE1212 flagellar basal-body rod protein FlgB~SPTR: Flagellar basal-body rod protein FlgB%3B~TIGRFAM: Flagellar basal-body rod protein FlgB~IMG reference gene:2504608044~TIGRFAM: flagellar basal-body rod protein FlgB gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1119 Tresu_1120 Tresu_1120 Tresu_1120 1191219 1191680 + flagellar basal-body rod protein FlgC COGs: COG1558 Flagellar basal body rod protein~InterPro IPR006299:IPR001444:IPR010930~KEGG: sta:STHERM_c09080 hypothetical protein~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgC%3B~TIGRFAM: Flagellar basal-body rod protein FlgC~IMG reference gene:2504608045~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgC gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1120 Tresu_1121 Tresu_1121 Tresu_1121 1191710 1192060 + flagellar hook-basal body complex subunit FliE InterPro IPR001624~KEGG: tpp:TPASS_0398 flagellar hook-basal body protein FliE~PFAM: Flagellar hook-basal body complex protein FliE~SPTR: Flagellar hook-basal body complex protein fliE%3B~TIGRFAM: Flagellar hook-basal body complex protein FliE~IMG reference gene:2504608046~PFAM: Flagellar hook-basal body complex protein FliE~TIGRFAM: flagellar hook-basal body complex protein FliE gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1121 Tresu_1122 Tresu_1122 Tresu_1122 1192319 1194025 + flagellar M-ring protein FliF COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein~InterPro IPR000067:IPR006182:IPR013556~KEGG: tpp:TPASS_0399 flagellar MS-ring protein~PFAM: Flagellar M-ring C-terminal%3B Secretory protein YscJ/FliF~SPTR: Flagellar M-ring protein FliF%3B~TIGRFAM: Flagellar FliF M-ring protein~IMG reference gene:2504608047~PFAM: Secretory protein of YscJ/FliF family%3B Flagellar M-ring protein C-terminal~TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1122 Tresu_1123 Tresu_1123 Tresu_1123 1194029 1195087 + flagellar motor switch protein FliG COGs: COG1536 Flagellar motor switch protein~InterPro IPR000090:IPR023087~KEGG: ssm:Spirs_1563 flagellar motor switch protein FliG~PFAM: Flagellar motor switch protein FliG%2C C-terminal~SPTR: Flagellar motor switch protein FliG%3B~TIGRFAM: Flagellar motor switch protein FliG~IMG reference gene:2504608048~PFAM: FliG C-terminal domain~TIGRFAM: flagellar motor switch protein FliG gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1123 Tresu_1124 Tresu_1124 Tresu_1124 1195108 1196040 + Flagellar assembly protein FliH/Type III secretion system HrpE COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein~InterPro IPR018035~KEGG: tde:TDE1217 flagellar assembly protein H~PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE~SPTR: Flagellar assembly protein fliH%2C putative%3B~IMG reference gene:2504608049~PFAM: Flagellar assembly protein FliH gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1124 Tresu_1125 Tresu_1125 Tresu_1125 1196174 1197523 + ATPase%2C FliI/YscN family COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase~InterPro IPR005714:IPR003593:IPR004100:IPR000194~KEGG: tde:TDE1218 flagellum-specific ATP synthase FliI~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~PRIAM: H(+)-transporting two-sector ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Flagellar protein export ATPase FliI%3B~TIGRFAM: ATPase%2C type III secretion system%2C FliI/YscN~IMG reference gene:2504608050~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: ATPase FliI/YscN family gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1125 Tresu_1126 Tresu_1126 Tresu_1126 1197556 1197963 + flagellar export protein FliJ InterPro IPR012823~KEGG: tde:TDE1219 flagellar protein FliJ%2C putative~SPTR: Flagellar protein FliJ%2C putative%3B~TIGRFAM: Flagellar export FliJ~IMG reference gene:2504608051~PFAM: Flagellar FliJ protein~TIGRFAM: flagellar export protein FliJ gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1126 Tresu_1127 Tresu_1127 Tresu_1127 1197960 1199612 - AAA ATPase COGs: COG0572 Uridine kinase~InterPro IPR003593~KEGG: tde:TDE2289 phosphoribulokinase/uridine kinase family protein~SMART: ATPase%2C AAA+ type%2C core~SPTR: Uridine kinase%3B~IMG reference gene:2504608052~PFAM: Phosphoribulokinase / Uridine kinase family gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1127 Tresu_1128 Tresu_1128 Tresu_1128 1199730 1200143 - ParB domain protein nuclease InterPro IPR003115~KEGG: ssm:Spirs_1726 ParB domain protein nuclease~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: ParB domain protein nuclease%3B~IMG reference gene:2504608053~PFAM: ParB-like nuclease domain~TIGRFAM: ParB-like partition proteins gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1128 Tresu_1129 Tresu_1129 Tresu_1129 1200173 1202755 - penicillin-binding protein%2C 1A family COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein~InterPro IPR011816:IPR001264:IPR001460~KEGG: tpp:TPASS_0705 penicillin-binding protein~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein%3B~TIGRFAM: Penicillin-binding protein 1A~IMG reference gene:2504608054~PFAM: Penicillin binding protein transpeptidase domain%3B Transglycosylase~TIGRFAM: penicillin-binding protein%2C 1A family gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1129 Tresu_1130 Tresu_1130 Tresu_1130 1202978 1204150 + riboflavin biosynthesis protein RibD COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis~InterPro IPR004794:IPR011549:IPR002125:IPR002734~KEGG: ere:EUBREC_3132 riboflavin biosynthesis protein~PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal%3B CMP/dCMP deaminase%2C zinc-binding~PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase.%2C 5-amino-6-(5-phosphoribosylamino)uracil reductase~SPTR: Diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase%3B~TIGRFAM: Riboflavin biosynthesis protein RibD%3B Riboflavin-specific deaminase%2C C-terminal~IMG reference gene:2504608055~PFAM: RibD C-terminal domain%3B Cytidine and deoxycytidylate deaminase zinc-binding region~TIGRFAM: riboflavin-specific deaminase C-terminal domain%3B riboflavin biosynthesis protein RibD gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1130 Tresu_1131 Tresu_1131 Tresu_1131 1204153 1204764 + riboflavin synthase%2C alpha subunit COGs: COG0307 Riboflavin synthase alpha chain~InterPro IPR001783~KEGG: bhy:BHWA1_02027 riboflavin synthase%2C alpha subunit~PFAM: Lumazine-binding protein~PRIAM: Riboflavin synthase~SPTR: Riboflavin synthase%2C alpha subunit%3B~TIGRFAM: Lumazine-binding protein~IMG reference gene:2504608056~PFAM: Lumazine binding domain~TIGRFAM: riboflavin synthase%2C alpha subunit gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1131 Tresu_1132 Tresu_1132 Tresu_1132 1204754 1205968 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase~HAMAP: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB%3B GTP cyclohydrolase II%2C RibA%3B Riboflavin biosynthesis protein RibBA~InterPro IPR000422:IPR000926:IPR016299~KEGG: ere:EUBREC_3130 riboflavin biosynthesis%3B GTP-cyclohydrolase II~PFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB%3B GTP cyclohydrolase II%2C RibA~SPTR: Riboflavin biosynthesis protein ribBA%3B~TIGRFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB%3B GTP cyclohydrolase II%2C RibA~IMG reference gene:2504608057~PFAM: GTP cyclohydrolase II%3B 3%2C4-dihydroxy-2-butanone 4-phosphate synthase~TIGRFAM: GTP cyclohydrolase II%3B 3%2C4-dihydroxy-2-butanone 4-phosphate synthase gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1132 Tresu_1133 Tresu_1133 Tresu_1133 1205998 1206468 + 6%2C7-dimethyl-8-ribityllumazine synthase COGs: COG0054 Riboflavin synthase beta-chain~HAMAP: 6%2C7-dimethyl-8-ribityllumazine synthase~InterPro IPR002180~KEGG: eel:EUBELI_20111 riboflavin synthase beta chain~PFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~SPTR: 6%2C7-dimethyl-8-ribityllumazine synthase%3B~TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~IMG reference gene:2504608058~PFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1133 Tresu_1134 Tresu_1134 Tresu_1134 1206647 1207948 - Histidyl-tRNA synthetase COGs: COG0124 Histidyl-tRNA synthetase~HAMAP: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~InterPro IPR015807:IPR002314:IPR004154~KEGG: tde:TDE1442 histidyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Anticodon-binding~PRIAM: Histidine--tRNA ligase~SPTR: Histidyl-tRNA synthetase%3B~TIGRFAM: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~IMG reference gene:2504608059~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: histidyl-tRNA synthetase gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1134 Tresu_1135 Tresu_1135 Tresu_1135 1208099 1208905 + putative transcriptional acitvator%2C Baf family COGs: COG1521 Putative transcriptional regulator protein~HAMAP: Type III pantothenate kinase~InterPro IPR004619~KEGG: sti:Sthe_0460 putative transcriptional acitvator%2C Baf family~PFAM: Type III pantothenate kinase~SPTR: Type III pantothenate kinase 2%3B~TIGRFAM: Type III pantothenate kinase~IMG reference gene:2504608060~PFAM: Bordetella pertussis Bvg accessory factor family~TIGRFAM: pantothenate kinase%2C type III gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1135 Tresu_1136 Tresu_1136 Tresu_1136 1208917 1210074 - N-acetylneuraminic acid synthase domain protein COGs: COG2089 Sialic acid synthase~InterPro IPR013132:IPR013974~KEGG: tde:TDE0960 NeuB family protein~PFAM: N-acetylneuraminic acid synthase%2C N-terminal%3B SAF domain~SPTR: NeuB family protein%3B~IMG reference gene:2504608061~PFAM: SAF domain%3B NeuB family gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1136 Tresu_1137 Tresu_1137 Tresu_1137 1210635 1213817 + Isoleucyl-tRNA synthetase COGs: COG0060 Isoleucyl-tRNA synthetase~HAMAP: Isoleucyl-tRNA synthetase%2C class Ia~InterPro IPR002301:IPR002300:IPR013155~KEGG: tde:TDE2663 isoleucyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ia%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding~PRIAM: Isoleucine--tRNA ligase~SPTR: Isoleucyl-tRNA synthetase%3B~TIGRFAM: Isoleucyl-tRNA synthetase%2C class Ia~IMG reference gene:2504608062~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: isoleucyl-tRNA synthetase gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1137 Tresu_1138 Tresu_1138 Tresu_1138 1213848 1214786 + hypothetical protein KEGG: tde:TDE2662 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504608063 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1138 Tresu_1139 Tresu_1139 Tresu_1139 1214783 1215391 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tde:TDE1613 hypothetical protein~PFAM: Tetratricopeptide TPR-1~SMART: Tetratricopeptide repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608064~PFAM: Tetratricopeptide repeat gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1139 Tresu_1140 Tresu_1140 Tresu_1140 1215398 1216741 - hypothetical protein KEGG: tde:TDE1456 GGDEF domain-containing protein~SPTR: GGDEF domain protein%3B~IMG reference gene:2504608065 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1140 Tresu_1141 Tresu_1141 Tresu_1141 1216747 1218234 - protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: tde:TDE1457 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608066~PFAM: Protein of unknown function DUF115 gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1141 Tresu_1142 Tresu_1142 Tresu_1142 1218231 1219736 - protein of unknown function DUF115 InterPro IPR002826~KEGG: tde:TDE1458 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608067~PFAM: Protein of unknown function DUF115 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1142 Tresu_1143 Tresu_1143 Tresu_1143 1219826 1222849 - hypothetical protein KEGG: ssm:Spirs_1936 zinc finger-domain-containing protein~SPTR: Zinc finger-domain-containing protein%3B~IMG reference gene:2504608068 gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1143 Tresu_1144 Tresu_1144 Tresu_1144 1223033 1223509 + Septum formation initiator InterPro IPR007060~KEGG: tde:TDE1461 septum formation initiator family protein~PFAM: Septum formation initiator~SPTR: Septum formation initiator family protein%3B~IMG reference gene:2504608069~PFAM: Septum formation initiator gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1144 Tresu_1145 Tresu_1145 Tresu_1145 1223496 1224077 + Sua5/YciO/YrdC/YwlC family protein COGs: COG0009 Putative translation factor (SUA5)~InterPro IPR004388:IPR006070~KEGG: tde:TDE1462 SUA5/YciO/YrdC/YwlC family protein~PFAM: Sua5/YciO/YrdC%2C N-terminal~SPTR: Sua5/YciO/YrdC/YwlC family protein%3B~TIGRFAM: Sua5/YciO/YrdC/YwlC~IMG reference gene:2504608070~PFAM: yrdC domain~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1145 Tresu_1146 Tresu_1146 Tresu_1146 1224067 1224906 - hypothetical protein KEGG: tpp:TPASS_0183 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608071 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1146 Tresu_1147 Tresu_1147 Tresu_1147 1224919 1225383 - SsrA-binding protein COGs: COG0691 tmRNA-binding protein~HAMAP: SsrA-binding protein~InterPro IPR000037~KEGG: tde:TDE1464 SsrA-binding protein~PFAM: SsrA-binding protein~SPTR: SsrA-binding protein%3B~TIGRFAM: SsrA-binding protein~IMG reference gene:2504608072~PFAM: SmpB protein~TIGRFAM: SsrA-binding protein gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1147 Tresu_1148 Tresu_1148 Tresu_1148 1225604 1226404 + hypothetical protein KEGG: tpp:TPASS_0185 signal peptidase I~SPTR: Signal peptidase I (Sip)%3B~IMG reference gene:2504608073~TIGRFAM: signal peptidase I%2C bacterial type gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1148 Tresu_1149 Tresu_1149 Tresu_1149 1226411 1227583 + oxygen-independent coproporphyrinogen III oxidase COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase~InterPro IPR004559:IPR006638:IPR007197:IPR010723~KEGG: cob:COB47_1000 oxygen-independent coproporphyrinogen III oxidase~PFAM: Radical SAM%3B HemN%2C C-terminal~SMART: Elongator protein 3/MiaB/NifB~SPTR: Oxygen-independent coproporphyrinogen III oxidase%3B~TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase~IMG reference gene:2504608074~PFAM: Radical SAM superfamily%3B HemN C-terminal region~TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1149 Tresu_1150 Tresu_1150 Tresu_1150 1227868 1229787 + 1-deoxy-D-xylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~HAMAP: Deoxyxylulose-5-phosphate synthase~InterPro IPR005477:IPR005475:IPR005476~KEGG: tde:TDE1910 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase~SMART: Transketolase-like%2C pyrimidine-binding domain~SPTR: 1-deoxy-D-xylulose-5-phosphate synthase%3B~TIGRFAM: Deoxyxylulose-5-phosphate synthase~IMG reference gene:2504608075~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1150 Tresu_1151 Tresu_1151 Tresu_1151 1229784 1230614 + dihydropteroate synthase COGs: COG0294 Dihydropteroate synthase~InterPro IPR006390:IPR000489~KEGG: sta:STHERM_c18380 dihydropteroate synthase~PFAM: Pterin-binding~PRIAM: Dihydropteroate synthase~SPTR: Dihydropteroate synthase%3B~TIGRFAM: Dihydropteroate synthase~IMG reference gene:2504608076~PFAM: Pterin binding enzyme~TIGRFAM: dihydropteroate synthase gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1151 Tresu_1152 Tresu_1152 Tresu_1152 1230601 1231428 + Conserved hypothetical protein CHP00159 COGs: COG1624 conserved hypothetical protein~InterPro IPR014046:IPR003390~KEGG: tde:TDE1909 hypothetical protein~PFAM: DNA integrity scanning protein%2C DisA%2C N-terminal~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP00159~IMG reference gene:2504608077~PFAM: DisA bacterial checkpoint controller nucleotide-binding~TIGRFAM: TIGR00159 family protein gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1152 Tresu_1153 Tresu_1153 Tresu_1153 1231394 1232434 + YbbR family protein InterPro IPR012505~KEGG: tde:TDE1908 hypothetical protein~PFAM: YbbR-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608078~PFAM: YbbR-like protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1153 Tresu_1154 Tresu_1154 Tresu_1154 1232443 1232826 + Holo-(acyl-carrier-protein) synthase COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)~HAMAP: Holo-[acyl carrier protein] synthase~InterPro IPR002582:IPR004568:IPR008278~KEGG: cbi:CLJ_B3704 holo-(acyl-carrier-protein) synthase~PFAM: 4'-phosphopantetheinyl transferase~SPTR: Holo-[acyl-carrier-protein] synthase%3B~TIGRFAM: Phosphopantethiene-protein transferase%3B Holo-[acyl carrier protein] synthase~IMG reference gene:2504608079~PFAM: 4'-phosphopantetheinyl transferase superfamily~TIGRFAM: phosphopantethiene--protein transferase domain%3B holo-[acyl-carrier-protein] synthase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1154 Tresu_1155 Tresu_1155 Tresu_1155 1232855 1233763 + Protein of unknown function DUF2225 COGs: COG1655 conserved hypothetical protein~InterPro IPR018708~KEGG: tde:TDE2274 hypothetical protein~PFAM: Protein of unknown function DUF2225~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608080~PFAM: Uncharacterized protein conserved in bacteria (DUF2225) gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1155 Tresu_1156 Tresu_1156 Tresu_1156 1233756 1234541 + tRNA pseudouridine synthase A COGs: COG0101 Pseudouridylate synthase~HAMAP: Pseudouridine synthase I%2C TruA~InterPro IPR001406:IPR020097~KEGG: tde:TDE2275 tRNA pseudouridine synthase A~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain~PRIAM: tRNA-pseudouridine synthase I~SPTR: tRNA pseudouridine synthase A%3B~TIGRFAM: Pseudouridine synthase I%2C TruA~IMG reference gene:2504608081~PFAM: tRNA pseudouridine synthase~TIGRFAM: pseudouridylate synthase I gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1156 Tresu_1157 Tresu_1157 Tresu_1157 1234592 1235806 + putative lipoprotein KEGG: tde:TDE0857 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504608082 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1157 Tresu_1158 Tresu_1158 Tresu_1158 1235822 1236388 + hypothetical protein IMG reference gene:2504608083 gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1158 Tresu_1159 Tresu_1159 Tresu_1159 1236443 1236883 + hypothetical protein KEGG: ssm:Spirs_2621 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608084 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1159 Tresu_1160 Tresu_1160 Tresu_1160 1236892 1237311 + NUDIX hydrolase InterPro IPR000086~KEGG: sth:STH2150 MutT-like protein~PFAM: NUDIX hydrolase domain~SPTR: CTP pyrophosphohydrolase%3B~IMG reference gene:2504608085~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1160 Tresu_1161 Tresu_1161 Tresu_1161 1237308 1237694 + hypothetical protein IMG reference gene:2504608086 gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1161 Tresu_1163 Tresu_1163 Tresu_1163 1238469 1239020 - hypothetical protein KEGG: tde:TDE1121 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608088~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1163 Tresu_1164 Tresu_1164 Tresu_1164 1239032 1239370 - anti-sigma-factor antagonist COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)~InterPro IPR003658:IPR002645~KEGG: tde:TDE1122 anti-anti-sigma factor~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~TIGRFAM: Anti-sigma factor antagonist~IMG reference gene:2504608089~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1164 Tresu_1165 Tresu_1165 Tresu_1165 1239400 1241100 - protein serine/threonine phosphatase with GAF(s) sensor(s) COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR003018:IPR001932:IPR010822~KEGG: tde:TDE1123 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal%3B GAF~SMART: Protein phosphatase 2C-like%3B GAF~SPTR: Putative sigma factor regulatory protein%3B~IMG reference gene:2504608090~PFAM: GAF domain%3B Stage II sporulation protein E (SpoIIE) gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1165 Tresu_1166 Tresu_1166 Tresu_1166 1241291 1242211 - hypothetical protein KEGG: ssm:Spirs_2366 hypothetical protein~SPTR: Transcriptional regulator%3B~IMG reference gene:2504608091 gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1166 Tresu_1167 Tresu_1167 Tresu_1167 1242186 1242956 - metallophosphoesterase InterPro IPR004843~KEGG: ssm:Spirs_2365 hypothetical protein~PFAM: Metallo-dependent phosphatase~SPTR: Metallophosphoesterase%3B~IMG reference gene:2504608092~PFAM: Calcineurin-like phosphoesterase gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1167 Tresu_1168 Tresu_1168 Tresu_1168 1242953 1244326 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: ssm:Spirs_2364 restriction endonuclease~PFAM: Tetratricopeptide TPR-1~SPTR: Restriction endonuclease%3B~IMG reference gene:2504608093~PFAM: Restriction endonuclease%3B Putative mitochondrial outer membrane protein gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1168 Tresu_1169 Tresu_1169 Tresu_1169 1244460 1245557 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tpa:TP0470 hypothetical protein~PFAM: Tetratricopeptide TPR-1~SMART: Tetratricopeptide repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608094 gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1169 Tresu_1170 Tresu_1170 Tresu_1170 1245532 1248936 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR013105:IPR001440~KEGG: tde:TDE1127 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SPTR: TPR domain protein%3B~IMG reference gene:2504608095~PFAM: Tetratricopeptide repeat gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1170 Tresu_1171 Tresu_1171 Tresu_1171 1248957 1250795 - DNA mismatch repair protein mutL COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase)~HAMAP: DNA mismatch repair protein%2C MutL~InterProIPR014763:IPR014790:IPR020667:IPR003594:IPR 013507~KEGG: tpp:TPASS_0303 DNA mismatch repair protein MutL~PFAM: MutL%2C C-terminal%2C dimerisation%3B DNA mismatch repair protein%2C C-terminal%3B ATPase-like%2C ATP-binding domain~SMART: MutL%2C C-terminal%2C dimerisation~SPTR: DNA mismatch repair protein mutL%3B~TIGRFAM: DNA mismatch repair protein%2C N-terminal~IMG reference gene:2504608096~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B MutL C terminal dimerisation domain%3B DNA mismatch repair protein%2C C-terminal domain~TIGRFAM: DNA mismatch repair protein MutL gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1171 Tresu_1172 Tresu_1172 Tresu_1172 1250792 1251091 - Exodeoxyribonuclease 7 small subunit HAMAP: Exonuclease VII%2C small subunit~InterPro IPR003761~KEGG: tde:TDE2066 exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII%2C small subunit~SPTR: Exodeoxyribonuclease 7 small subunit%3B~IMG reference gene:2504608097~PFAM: Exonuclease VII small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1172 Tresu_1173 Tresu_1173 Tresu_1173 1251103 1252311 - Exodeoxyribonuclease 7 large subunit COGs: COG1570 Exonuclease VII large subunit~HAMAP: Exonuclease VII%2C large subunit~InterPro IPR003753:IPR004365:IPR020579~KEGG: tde:TDE1017 exodeoxyribonuclease VII%2C large subunit~PFAM: Exonuclease VII%2C large subunit%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: Exodeoxyribonuclease VII~SPTR: Exodeoxyribonuclease 7 large subunit%3B~TIGRFAM: Exonuclease VII%2C large subunit~IMG reference gene:2504608098~PFAM: Exonuclease VII%2C large subunit%3B OB-fold nucleic acid binding domain~TIGRFAM: exodeoxyribonuclease VII%2C large subunit gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1173 Tresu_1174 Tresu_1174 Tresu_1174 1252375 1253997 + Radical SAM domain protein InterPro IPR007197~KEGG: tde:TDE1919 hypothetical protein~PFAM: Radical SAM~SPTR: Conserved domain protein%3B~IMG reference gene:2504608099 gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1174 Tresu_1175 Tresu_1175 Tresu_1175 1253972 1254925 + hypothetical protein KEGG: tde:TDE1918 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608100 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1175 Tresu_1176 Tresu_1176 Tresu_1176 1254940 1257474 + acylneuraminate cytidylyltransferase COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog~InterPro IPR003329:IPR013217~KEGG: tde:TDE1917 cytidyltransferase-like protein~PFAM: Acylneuraminate cytidylyltransferase%3B Methyltransferase type 12~SPTR: Cytidylyltransferase domain protein%3B~IMG reference gene:2504608101~PFAM: Methyltransferase domain%3B Cytidylyltransferase gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1176 Tresu_1177 Tresu_1177 Tresu_1177 1257510 1259078 + ATP-grasp fold domain protein%2C DUF201-type COGs: COG0439 Biotin carboxylase~InterPro IPR003806~KEGG: tde:TDE2209 CarB family protein~PFAM: ATP-grasp fold%2C DUF201-type~SPTR: CarB family protein%3B~IMG reference gene:2504608102~PFAM: ATP-grasp domain gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1177 Tresu_1178 Tresu_1178 Tresu_1178 1259075 1260106 + cell wall hydrolase/autolysin COGs: COG0860 N-acetylmuramoyl-L-alanine amidase~InterPro IPR002508~KEGG: tde:TDE1714 N-acetylmuramoyl-L-alanine amidase~PFAM: Cell wall hydrolase/autolysin%2C catalytic~SMART: Cell wall hydrolase/autolysin%2C catalytic~SPTR: N-acetylmuramoyl-L-alanine amidase%2C family 3%3B~IMG reference gene:2504608103~PFAM: N-acetylmuramoyl-L-alanine amidase gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1178 Tresu_1179 Tresu_1179 Tresu_1179 1260109 1260573 + hypothetical protein KEGG: ssm:Spirs_2927 lipoprotein LpqB%2C GerMN domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608104~PFAM: Sporulation and spore germination gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1179 Tresu_1180 Tresu_1180 Tresu_1180 1260708 1261793 + flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tde:TDE1712 flagellar filament outer layer protein~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Flagellar filament outer layer protein%3B~IMG reference gene:2504608105~PFAM: Flagellar filament outer layer protein Flaa gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1180 Tresu_1181 Tresu_1181 Tresu_1181 1261889 1263142 + RelA/SpoT domain protein COGs: COG2357 conserved hypothetical protein~InterPro IPR007685:IPR019734:IPR001440~KEGG: tde:TDE1711 RelA/SpoT domain-containing protein~PFAM: RelA/SpoT%3B Tetratricopeptide TPR-1~SMART: RelA/SpoT%3B Tetratricopeptide repeat~SPTR: RelA/SpoT domain protein%3B~IMG reference gene:2504608106~PFAM: Region found in RelA / SpoT proteins%3B Tetratricopeptide repeat gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1181 Tresu_1182 Tresu_1182 Tresu_1182 1263533 1264735 - YidE/YbjL duplication COGs: COG2985 permease~InterPro IPR006512~KEGG: toc:Toce_1835 YidE/YbjL duplication~PFAM: YidE/YbjL duplication~SPTR: Predicted permease%3B~TIGRFAM: YidE/YbjL duplication~IMG reference gene:2504608108~PFAM: Predicted Permease Membrane Region~TIGRFAM: AspT/YidE/YbjL antiporter duplication domain gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1182 Tresu_1183 Tresu_1183 Tresu_1183 1265465 1266472 - D-lactate dehydrogenase COGs: COG1052 Lactate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: str:Sterm_3357 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain~PRIAM: D-lactate dehydrogenase~SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein%3B~IMG reference gene:2504608109~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1183 Tresu_1184 Tresu_1184 Tresu_1184 1266786 1266896 + hypothetical protein KEGG: tde:TDE0472 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608110 gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1184 Tresu_1185 Tresu_1185 Tresu_1185 1269853 1270968 + pseudogene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1185 Tresu_1186 Tresu_1186 Tresu_1186 1268265 1269176 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608112 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1186 Tresu_1187 Tresu_1187 Tresu_1187 1269193 1269522 - hypothetical protein IMG reference gene:2504608113 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1187 Tresu_1188 Tresu_1188 Tresu_1188 1270972 1271268 + hypothetical protein KEGG: tde:TDE0474 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608114 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1188 Tresu_1189 Tresu_1189 Tresu_1189 1271338 1271940 + flavin reductase domain protein FMN-binding protein COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family~InterPro IPR002563:IPR004039~KEGG: bpb:bpr_I0363 flavin reductase domain-containing protein~PFAM: Flavin reductase-like%2C FMN-binding%3B Rubredoxin-type Fe(Cys)4 protein~SMART: Flavin reductase-like%2C FMN-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608115~PFAM: Flavin reductase like domain gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1189 Tresu_1190 Tresu_1190 Tresu_1190 1272471 1272665 - pseudogene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1190 Tresu_1191 Tresu_1191 Tresu_1191 1272819 1273142 + hypothetical protein KEGG: dly:Dehly_1177 XRE family transcriptional regulator~SPTR: Predicted transcriptional regulator%3B~IMG reference gene:2504608118~PFAM: Helix-turn-helix gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1191 Tresu_1192 Tresu_1192 Tresu_1192 1273155 1274963 + Protein of unknown function DUF2081 COGs: COG3472 conserved hypothetical protein~InterPro IPR004919:IPR018651~KEGG: sti:Sthe_1561 protein of unknown function DUF262~PFAM: Protein of unknown function DUF2081%3B Domain of unknown function DUF262~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2504608119~PFAM: Uncharacterized conserved protein (DUF2081)%3B Protein of unknown function DUF262 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1192 Tresu_1193 Tresu_1193 Tresu_1193 1274983 1277892 + type III restriction protein res subunit InterPro IPR006935~KEGG: pth:PTH_1522 hypothetical protein~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608120~PFAM: Type III restriction enzyme%2C res subunit gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1193 Tresu_1194 Tresu_1194 Tresu_1194 1277893 1278945 + hypothetical protein COGs: COG3943 Virulence protein~KEGG: eel:EUBELI_01526 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608121 gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1194 Tresu_1195 Tresu_1195 Tresu_1195 1278935 1280950 + DNA methylase N-4/N-6 domain protein COGs: COG2189 Adenine specific DNA methylase Mod~InterPro IPR002941~KEGG: pth:PTH_1523 adenine specific DNA methylase Mod~PFAM: DNA methylase N-4/N-6~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608122~PFAM: DNA methylase gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1195 Tresu_1196 Tresu_1196 Tresu_1196 1280966 1282756 + hypothetical protein KEGG: dae:Dtox_3811 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608123 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1196 Tresu_1197 Tresu_1197 Tresu_1197 1282758 1283396 + pseudogene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1197 Tresu_1198 Tresu_1198 Tresu_1198 1283399 1283560 + pseudogene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1198 Tresu_1199 Tresu_1199 Tresu_1199 1284044 1285648 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR014001:IPR001650:IPR011545~KEGG: ssm:Spirs_3800 DEAD/DEAH box helicase domain protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: ATP-dependent RNA helicase DbpA%3B~IMG reference gene:2504608126~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1199 Tresu_1200 Tresu_1200 Tresu_1200 1285663 1287303 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR003439~KEGG: tde:TDE1592 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504608127~PFAM: ABC transporter gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1200 Tresu_1201 Tresu_1201 Tresu_1201 1287374 1289326 - hypothetical protein KEGG: tde:TDE2184 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608128 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1201 Tresu_1202 Tresu_1202 Tresu_1202 1289336 1290448 - membrane-associated zinc metalloprotease COGs: COG0750 membrane-associated Zn-dependent protease 1~InterPro IPR004387:IPR001478:IPR008915~KEGG: tye:THEYE_A0225 membrane-associated zinc metalloprotease%2C putative~PFAM: Peptidase M50~SMART: PDZ/DHR/GLGF~SPTR: Membrane-associated zinc metalloprotease%2C putative%3B~TIGRFAM: Peptidase M50%2C putative membrane-associated zinc metallopeptidase~IMG reference gene:2504608129~PFAM: Peptidase family M50~TIGRFAM: RIP metalloprotease RseP gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1202 Tresu_1203 Tresu_1203 Tresu_1203 1290445 1291560 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase~HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~InterPro IPR003821:IPR013512:IPR013644~KEGG: tde:TDE2342 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase~SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~IMG reference gene:2504608130~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1203 Tresu_1204 Tresu_1204 Tresu_1204 1291560 1292441 - phosphatidate cytidylyltransferase COGs: COG4589 CDP-diglyceride synthetase/phosphatidate cytidylyltransferase~InterPro IPR000374~KEGG: tde:TDE2343 phosphatidate cytidylyltransferase~PFAM: Phosphatidate cytidylyltransferase~SPTR: Phosphatidate cytidylyltransferase%3B~IMG reference gene:2504608131~PFAM: Cytidylyltransferase family gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1204 Tresu_1205 Tresu_1205 Tresu_1205 1292438 1293151 - Undecaprenyl pyrophosphate synthase COGs: COG0020 Undecaprenyl pyrophosphate synthase~HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke~InterPro IPR001441~KEGG: tde:TDE2344 undecaprenyl diphosphate synthase~PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e~PRIAM: Di-trans%2Cpoly-cis-decaprenylcistransferase~SPTR: Undecaprenyl pyrophosphate synthase%3B~TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like~IMG reference gene:2504608132~PFAM: Putative undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1205 Tresu_1206 Tresu_1206 Tresu_1206 1293157 1293696 - Ribosome-recycling factor COGs: COG0233 Ribosome recycling factor~HAMAP: Ribosome recycling factor%2C bacterial-like~InterPro IPR002661:IPR015998~KEGG: ssm:Spirs_2866 ribosome recycling factor~PFAM: Ribosome recycling factor~SPTR: Ribosome-recycling factor%3B~TIGRFAM: Ribosome recycling factor~IMG reference gene:2504608133~PFAM: Ribosome recycling factor~TIGRFAM: ribosome recycling factor gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1206 Tresu_1207 Tresu_1207 Tresu_1207 1293788 1294624 - Elongation factor Ts COGs: COG0264 Translation elongation factor Ts~HAMAP: Translation elongation factor EFTs/EF1B~InterPro IPR001816:IPR000449:IPR014039~KEGG: tde:TDE2346 elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B%2C dimerisation%3B Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal~SPTR: Elongation factor Ts%3B~TIGRFAM: Translation elongation factor EFTs/EF1B~IMG reference gene:2504608134~PFAM: Elongation factor TS%3B UBA/TS-N domain~TIGRFAM: translation elongation factor Ts gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1207 Tresu_1208 Tresu_1208 Tresu_1208 1294644 1295510 - ribosomal protein S2 COGs: COG0052 Ribosomal protein S2~InterPro IPR005706:IPR001865~KEGG: tde:TDE2347 30S ribosomal protein S2~PFAM: Ribosomal protein S2~SPTR: 30S ribosomal protein S2%3B~TIGRFAM: Ribosomal protein S2%2C bacteria/mitochondria/plastid~IMG reference gene:2504608135~PFAM: Ribosomal protein S2~TIGRFAM: ribosomal protein S2%2C bacterial type gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1208 Tresu_1209 Tresu_1209 Tresu_1209 1295646 1296236 - Septum formation protein Maf COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation~HAMAP: Maf-like protein~InterPro IPR003697~KEGG: pth:PTH_0815 nucleotide-binding protein~PFAM: Maf-like protein~SPTR: Maf-like protein TREVI0001_0108%3B~TIGRFAM: Maf-like protein~IMG reference gene:2504608136~PFAM: Maf-like protein~TIGRFAM: MAF protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1209 Tresu_1210 Tresu_1210 Tresu_1210 1296521 1297258 - hypothetical protein KEGG: tde:TDE2349 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608138 gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1210 Tresu_1211 Tresu_1211 Tresu_1211 1297328 1297924 - putative lipoprotein KEGG: tde:TDE2350 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504608139 gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1211 Tresu_1212 Tresu_1212 Tresu_1212 1298240 1298737 + Phosphopantetheine adenylyltransferase COGs: COG0669 Phosphopantetheine adenylyltransferase~HAMAP: Coenzyme A biosynthesis protein~InterPro IPR004821:IPR001980:IPR004820~KEGG: tde:TDE1375 pantetheine-phosphate adenylyltransferase~PFAM: Cytidylyltransferase~PRIAM: Pantetheine-phosphate adenylyltransferase~SPTR: Phosphopantetheine adenylyltransferase%3B~TIGRFAM: Coenzyme A biosynthesis protein%3B Cytidyltransferase-related~IMG reference gene:2504608140~PFAM: Cytidylyltransferase~TIGRFAM: pantetheine-phosphate adenylyltransferase%2C bacterial%3B cytidyltransferase-related domain gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1212 Tresu_1213 Tresu_1213 Tresu_1213 1298886 1299074 + 50S ribosomal protein L32 COGs: COG0333 Ribosomal protein L32~HAMAP: Ribosomal protein L32p~InterPro IPR002677~KEGG: tde:TDE1025 50S ribosomal protein L32~PFAM: Ribosomal protein L32p~SPTR: 50S ribosomal protein L32%3B~TIGRFAM: Ribosomal protein L32p~IMG reference gene:2504608141~PFAM: Ribosomal L32p protein family~TIGRFAM: ribosomal protein L32 gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1213 Tresu_1214 Tresu_1214 Tresu_1214 1299089 1299325 + Acyl carrier protein COGs: COG0236 Acyl carrier protein~HAMAP: Acyl carrier protein (ACP)~InterPro IPR003231:IPR006163~KEGG: tde:TDE1026 acyl carrier protein~PFAM: Phosphopantetheine-binding~SPTR: Acyl carrier protein%3B~TIGRFAM: Acyl carrier protein (ACP)~IMG reference gene:2504608142~PFAM: Phosphopantetheine attachment site~TIGRFAM: acyl carrier protein gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1214 Tresu_1215 Tresu_1215 Tresu_1215 1299479 1300225 + Ribonuclease 3 COGs: COG0571 dsRNA-specific ribonuclease~HAMAP: Ribonuclease III%2C bacterial~InterPro IPR011907:IPR000999:IPR001159~KEGG: ssm:Spirs_1889 ribonuclease III~PFAM: Ribonuclease III%3B Double-stranded RNA-binding~PRIAM: Ribonuclease III~SMART: Ribonuclease III%3B Double-stranded RNA-binding~SPTR: Ribonuclease 3%3B~TIGRFAM: Ribonuclease III%2C bacterial~IMG reference gene:2504608143~PFAM: RNase3 domain%3B Double-stranded RNA binding motif~TIGRFAM: ribonuclease III%2C bacterial gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1215 Tresu_1216 Tresu_1216 Tresu_1216 1300232 1301635 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR002646:IPR006674~KEGG: tde:TDE1033 polyA polymerase family protein~PFAM: Poly A polymerase%2C head domain%3B Metal-dependent phosphohydrolase%2C HD subdomain~SPTR: PolyA polymerase family protein%3B~IMG reference gene:2504608144~PFAM: HD domain%3B Poly A polymerase head domain~TIGRFAM: uncharacterized domain HDIG gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1216 Tresu_1217 Tresu_1217 Tresu_1217 1301676 1302362 + thiamine pyrophosphokinase COGs: COG1564 Thiamine pyrophosphokinase~InterPro IPR006282:IPR007371~KEGG: ssm:Spirs_1940 thiamine pyrophosphokinase~PFAM: Thiamin pyrophosphokinase%2C catalytic domain~SPTR: Thiamine pyrophosphokinase%3B~TIGRFAM: Thiamin pyrophosphokinase~IMG reference gene:2504608145~PFAM: Thiamin pyrophosphokinase%2C catalytic domain~TIGRFAM: thiamine pyrophosphokinase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1217 Tresu_1218 Tresu_1218 Tresu_1218 1302359 1302715 - hypothetical protein IMG reference gene:2504608146 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1218 Tresu_1219 Tresu_1219 Tresu_1219 1302792 1303622 + hypothetical protein KEGG: ssm:Spirs_1943 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504608147 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1219 Tresu_1220 Tresu_1220 Tresu_1220 1303639 1304019 + chorismate mutase COGs: COG4401 Chorismate mutase~InterPro IPR008243~KEGG: tde:TDE1502 chorismate mutase~PFAM: Chorismate mutase%2C AroH class~SPTR: Chorismate mutase%3B~TIGRFAM: Chorismate mutase%2C AroH class~IMG reference gene:2504608148~PFAM: Chorismate mutase type I~TIGRFAM: monofunctional chorismate mutase%2C gram positive type%2C clade 1 gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1220 Tresu_1221 Tresu_1221 Tresu_1221 1303976 1305598 + Starch synthase COGs: COG0297 Glycogen synthase~InterPro IPR013534:IPR001296~KEGG: dak:DaAHT2_2094 starch synthase catalytic domain protein~PFAM: Starch synthase%2C catalytic domain%3B Glycosyl transferase%2C group 1~PRIAM: Starch synthase~SPTR: Starch synthase catalytic domain protein%3B~IMG reference gene:2504608149~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1~TIGRFAM: glycogen/starch synthases%2C ADP-glucose type gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1221 Tresu_1222 Tresu_1222 Tresu_1222 1305676 1307379 - P83100 family protein InterPro IPR007926~KEGG: tde:TDE2699 antigen%2C putative~PFAM: Borrelia P83100~SPTR: Antigen%2C putative%3B~IMG reference gene:2504608150~PFAM: Borrelia P83/100 protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1222 Tresu_1223 Tresu_1223 Tresu_1223 1307547 1309280 - hypothetical protein KEGG: tde:TDE2698 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608151 gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1223 Tresu_1224 Tresu_1224 Tresu_1224 1309277 1310494 - (Uracil-5)-methyltransferase COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase~InterPro IPR002792:IPR010280~KEGG: tde:TDE2619 RNA methyltransferase~PFAM: (Uracil-5)-methyltransferase%3B Deoxyribonuclease/rho motif-related TRAM~SPTR: Uncharacterized RNA methyltransferase TDE_2619%3B~IMG reference gene:2504608152~PFAM: tRNA (Uracil-5-)-methyltransferase%3B TRAM domain gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1224 Tresu_1225 Tresu_1225 Tresu_1225 1310573 1311226 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG0637 phosphatase/phosphohexomutase~InterPro IPR006402:IPR005834~KEGG: bpb:bpr_I0859 HAD superfamily hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Hydrolase HAD superfamily%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504608153~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1225 Tresu_1226 Tresu_1226 Tresu_1226 1311431 1311646 + 50S ribosomal protein L31 COGs: COG0254 Ribosomal protein L31~HAMAP: Ribosomal protein L31~InterPro IPR002150~KEGG: ssm:Spirs_3178 ribosomal protein L31~PFAM: Ribosomal protein L31~SPTR: 50S ribosomal protein L31%3B~TIGRFAM: Ribosomal protein L31~IMG reference gene:2504608154~PFAM: Ribosomal protein L31~TIGRFAM: ribosomal protein L31 gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1226 Tresu_1227 Tresu_1227 Tresu_1227 1311734 1313188 + hypothetical protein KEGG: ssm:Spirs_4282 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608155 gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1227 Tresu_1228 Tresu_1228 Tresu_1228 1313175 1314287 - rRNA (guanine-N(2)-)-methyltransferase COGs: COG1092 SAM-dependent methyltransferase~KEGG: tde:TDE1913 hypothetical protein~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608156~PFAM: S-adenosylmethionine-dependent methyltransferase gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1228 Tresu_1229 Tresu_1229 Tresu_1229 1314307 1314861 - Phosphinothricin acetyltransferase COGs: COG1247 Sortase and related acyltransferase~InterPro IPR000182~KEGG: hut:Huta_1133 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~PRIAM: Phosphinothricin acetyltransferase~SPTR: Sortase and related acyltransferases%3B~IMG reference gene:2504608157~PFAM: Acetyltransferase (GNAT) family gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1229 Tresu_1230 Tresu_1230 Tresu_1230 1314868 1315905 - peptidase U61 LD-carboxypeptidase A COGs: COG1619 conserved hypothetical protein~InterPro IPR003507~KEGG: ere:EUBREC_2311 muramoyltetrapeptide carboxypeptidase~PFAM: Peptidase S66%2C LD-carboxypeptidase A~SPTR: Uncharacterized proteins%2C homologs of microcin C7 resistance protein MccF%3B~IMG reference gene:2504608158~PFAM: LD-carboxypeptidase gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1230 Tresu_1231 Tresu_1231 Tresu_1231 1315962 1316138 - hypothetical protein IMG reference gene:2504608159 gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1231 Tresu_1232 Tresu_1232 Tresu_1232 1316417 1317298 + hypothetical protein IMG reference gene:2504608161 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1232 Tresu_1233 Tresu_1233 Tresu_1233 1317658 1318002 - helix-turn-helix domain protein InterPro IPR001387~KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504608164~PFAM: Helix-turn-helix gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1233 Tresu_1234 Tresu_1234 Tresu_1234 1318187 1318465 - histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119~KEGG: ere:EUBREC_0527 DNA-binding protein HU~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608165~PFAM: Bacterial DNA-binding protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1234 Tresu_1235 Tresu_1235 Tresu_1235 1318721 1319011 + 30S ribosomal protein S6 COGs: COG0360 Ribosomal protein S6~HAMAP: Ribosomal protein S6%2C plastid/chloroplast~InterPro IPR000529:IPR020814~KEGG: tde:TDE1678 30S ribosomal protein S6~PFAM: Ribosomal protein S6~SPTR: 30S ribosomal protein S6%3B~TIGRFAM: Ribosomal protein S6~IMG reference gene:2504608166~PFAM: Ribosomal protein S6~TIGRFAM: ribosomal protein S6 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1235 Tresu_1236 Tresu_1236 Tresu_1236 1319035 1319523 + single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR011344:IPR000424~KEGG: ssm:Spirs_2878 single-strand binding protein~PFAM: Primosome PriB/single-strand DNA-binding~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: Single-strand DNA-binding~IMG reference gene:2504608167~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1236 Tresu_1237 Tresu_1237 Tresu_1237 1319569 1319883 + 30S ribosomal protein S18 COGs: COG0238 Ribosomal protein S18~HAMAP: Ribosomal protein S18~InterPro IPR001648~KEGG: tde:TDE1676 30S ribosomal protein S18~PFAM: Ribosomal protein S18~SPTR: 30S ribosomal protein S18%3B~TIGRFAM: Ribosomal protein S18~IMG reference gene:2504608168~PFAM: Ribosomal protein S18~TIGRFAM: ribosomal protein S18 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1237 Tresu_1238 Tresu_1238 Tresu_1238 1319951 1320472 + 50S ribosomal protein L9 COGs: COG0359 Ribosomal protein L9~HAMAP: Ribosomal protein L9%2C bacteria/chloroplast~InterPro IPR020594:IPR020070:IPR020069~KEGG: tde:TDE1675 50S ribosomal protein L9~PFAM: Ribosomal protein L9%2C N-terminal%3B Ribosomal protein L9%2C C-terminal~SPTR: 50S ribosomal protein L9%3B~TIGRFAM: Ribosomal protein L9%2C bacteria/chloroplast~IMG reference gene:2504608169~PFAM: Ribosomal protein L9%2C N-terminal domain%3B Ribosomal protein L9%2C C-terminal domain~TIGRFAM: ribosomal protein L9 gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1238 Tresu_1239 Tresu_1239 Tresu_1239 1320617 1321945 + replicative DNA helicase COGs: COG0305 Replicative DNA helicase~InterPro IPR007692:IPR003593:IPR007693:IPR007694~KEGG: ssm:Spirs_2874 replicative DNA helicase~PFAM: DNA helicase%2C DnaB-like%2C C-terminal%3B DNA helicase%2C DnaB-like%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: Replicative DNA helicase%3B~TIGRFAM: DNA helicase%2C DnaB type~IMG reference gene:2504608170~PFAM: DnaB-like helicase N terminal domain%3B DnaB-like helicase C terminal domain~TIGRFAM: replicative DNA helicase gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1239 Tresu_1240 Tresu_1240 Tresu_1240 1322019 1322963 + beta-lactamase domain protein COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I~InterPro IPR001279~KEGG: tde:TDE1541 metallo-beta-lactamase family protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504608171~PFAM: Metallo-beta-lactamase superfamily gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1240 Tresu_1241 Tresu_1241 Tresu_1241 1322960 1324015 + aminodeoxychorismate lyase COGs: COG1559 periplasmic solute-binding protein~InterPro IPR003770~KEGG: tde:TDE1543 hypothetical protein~PFAM: Uncharacterised protein family UPF0755~SPTR: Aminodeoxychorismate lyase%3B~TIGRFAM: Uncharacterised protein family UPF0755~IMG reference gene:2504608172~PFAM: YceG-like family~TIGRFAM: conserved hypothetical protein%2C YceG family gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1241 Tresu_1242 Tresu_1242 Tresu_1242 1324022 1325824 + DNA primase COGs: COG0358 DNA primase~InterPro IPR006295:IPR002694:IPR006171:IPR013264~KEGG: tde:TDE1345 DNA primase~SPTR: DNA primase%3B~TIGRFAM: DNA primase%2C DnaG~IMG reference gene:2504608173~PFAM: Toprim domain%3B DNA primase catalytic core%2C N-terminal domain%3B CHC2 zinc finger~TIGRFAM: DNA primase%2C catalytic core gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1242 Tresu_1243 Tresu_1243 Tresu_1243 1325828 1327795 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR014284:IPR012760:IPR007127:IPR009042:IPR 007627:IPR007624:IPR007630~KEGG: ssm:Spirs_2078 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma factor 70%2C region 1.1%3B RNA polymerase sigma-70 region 4~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor RpoD%2C C-terminal%3B RNA polymerase sigma-70~IMG reference gene:2504608174~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 factor%2C region 1.1%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B RNA polymerase sigma factor RpoD%2C C-terminal domain gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1243 Tresu_1244 Tresu_1244 Tresu_1244 1327875 1328738 + protein of unknown function DUF164 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding~InterPro IPR003743~KEGG: ssm:Spirs_2077 protein of unknown function DUF164~PFAM: Protein of unknown function DUF164~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608175~PFAM: Putative zinc ribbon domain gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1244 Tresu_1245 Tresu_1245 Tresu_1245 1329202 1330164 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: tde:TDE1348 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504608177 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1245 Tresu_1246 Tresu_1246 Tresu_1246 1330202 1331254 + cell shape determining protein%2C MreB/Mrl family COGs: COG1077 Actin-like ATPase involved in cell morphogenesis~InterPro IPR004753~KEGG: tpp:TPASS_0497 rod shape-determining protein MreB~PFAM: Cell shape determining protein MreB/Mrl~SPTR: Rod shape-determining protein MreB%3B~TIGRFAM: Cell shape determining protein MreB/Mrl~IMG reference gene:2504608178~PFAM: MreB/Mbl protein~TIGRFAM: cell shape determining protein%2C MreB/Mrl family gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1246 Tresu_1247 Tresu_1247 Tresu_1247 1331275 1332153 + rod shape-determining protein MreC COGs: COG1792 Cell shape-determining protein~InterPro IPR005223:IPR007221~KEGG: tpp:TPASS_0498 rod shape-determining protein MreC~PFAM: Rod shape-determining protein MreC~SPTR: Rod shape-determining protein MreC%3B~TIGRFAM: Rod shape-determining protein MreC%2C subtype~IMG reference gene:2504608179~PFAM: rod shape-determining protein MreC~TIGRFAM: rod shape-determining protein MreC gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1247 Tresu_1248 Tresu_1248 Tresu_1248 1332174 1332686 + rod shape-determining protein MreD InterPro IPR007227~KEGG: tde:TDE1351 rod shape-determining protein MreD~SPTR: Rod shape-determining protein MreD%3B~TIGRFAM: Cell shape-determining protein MreD~IMG reference gene:2504608180~PFAM: rod shape-determining protein MreD~TIGRFAM: rod shape-determining protein MreD gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1248 Tresu_1249 Tresu_1249 Tresu_1249 1332683 1334596 + penicillin-binding protein 2 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR017790:IPR005311:IPR001460~KEGG: tde:TDE1352 penicillin-binding protein~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein%3B~TIGRFAM: Penicillin-binding protein 2~IMG reference gene:2504608181~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain~TIGRFAM: penicillin-binding protein 2 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1249 Tresu_1250 Tresu_1250 Tresu_1250 1334593 1335912 + rod shape-determining protein RodA COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR011923:IPR001182~KEGG: tde:TDE1353 rod shape-determining protein RodA~PFAM: Cell cycle protein~SPTR: Rod shape-determining protein RodA%3B~TIGRFAM: Rod shape-determining protein RodA~IMG reference gene:2504608182~PFAM: Cell cycle protein~TIGRFAM: rod shape-determining protein RodA gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1250 Tresu_1251 Tresu_1251 Tresu_1251 1335909 1338626 + Protein of unknown function DUF2344 COGs: COG1032 Fe-S oxidoreductase~InterPro IPR006638:IPR007197:IPR018768~KEGG: ssm:Spirs_2070 radical SAM domain protein~PFAM: Protein of unknown function DUF2344%3B Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504608183~PFAM: Uncharacterized protein conserved in bacteria (DUF2344)%3B Radical SAM superfamily~TIGRFAM: radical SAM-linked protein gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1251 Tresu_1252 Tresu_1252 Tresu_1252 1338743 1342483 - transcription-repair coupling factor COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase)~InterProIPR004576:IPR014001:IPR001650:IPR003711:IPR 011545:IPR005118~KEGG: tde:TDE1287 transcription-repair coupling factor~PFAM: Transcription-repair-coupling factor domain%3B Transcription factor CarD%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: Transcription-repair coupling factor%3B~TIGRFAM: Transcription-repair coupling factor~IMG reference gene:2504608184~PFAM: Helicase conserved C-terminal domain%3B TRCF domain%3B CarD-like/TRCF domain%3B DEAD/DEAH box helicase~TIGRFAM: transcription-repair coupling factor (mfd) gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1252 Tresu_1253 Tresu_1253 Tresu_1253 1342592 1343569 + hypothetical protein KEGG: tde:TDE1089 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608185 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1253 Tresu_1254 Tresu_1254 Tresu_1254 1343569 1343958 + hypothetical protein KEGG: tde:TDE2660 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608186 gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1254 Tresu_1255 Tresu_1255 Tresu_1255 1344124 1344843 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR006439:IPR005834~KEGG: mba:Mbar_A0557 haloacid dehalogenase-like hydrolase family protein~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Haloacid dehalogenase-like hydrolase family protein%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~IMG reference gene:2504608188~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1255 Tresu_1256 Tresu_1256 Tresu_1256 1345240 1346391 + Alanine racemase COGs: COG0787 Alanine racemase~HAMAP: Alanine racemase~InterPro IPR000821:IPR001608:IPR011079~KEGG: tde:TDE1095 alanine racemase~PFAM: Alanine racemase%2C N-terminal%3B Alanine racemase%2C C-terminal~PRIAM: Alanine racemase~SPTR: Alanine racemase%3B~TIGRFAM: Alanine racemase~IMG reference gene:2504608189~PFAM: Alanine racemase%2C C-terminal domain%3B Alanine racemase%2C N-terminal domain~TIGRFAM: alanine racemase gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1256 Tresu_1257 Tresu_1257 Tresu_1257 1346385 1347818 - FolC bifunctional protein COGs: COG0285 Folylpolyglutamate synthase~InterPro IPR001645:IPR013221~KEGG: tde:TDE1084 folylpolyglutamate synthetase%2C putative~PFAM: Mur ligase%2C central~PRIAM: Tetrahydrofolate synthase~SPTR: Folylpolyglutamate synthetase%2C putative%3B~TIGRFAM: Folylpolyglutamate synthetase~IMG reference gene:2504608190~PFAM: Mur ligase middle domain~TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1257 Tresu_1258 Tresu_1258 Tresu_1258 1347815 1348663 - hypothetical protein IMG reference gene:2504608191 gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1258 Tresu_1259 Tresu_1259 Tresu_1259 1348660 1350891 - ABC-type uncharacterized transport system COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component~InterPro IPR019196~KEGG: tde:TDE2112 hypothetical protein~PFAM: ABC-type uncharacterised transport system~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608192~PFAM: ABC-type uncharacterized transport system gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1259 Tresu_1260 Tresu_1260 Tresu_1260 1350888 1351607 - Sulfate-transporting ATPase COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: btu:BT0754 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter ATP-binding protein%3B~IMG reference gene:2504608193~PFAM: ABC transporter gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1260 Tresu_1261 Tresu_1261 Tresu_1261 1351597 1352523 - Ribonuclease Z COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III~HAMAP: Ribonuclease Z~InterPro IPR013471:IPR001279~KEGG: tde:TDE1951 ribonuclease Z~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: Ribonuclease Z%3B~TIGRFAM: Ribonuclease Z~manually curated~IMG reference gene:2504608194~PFAM: Metallo-beta-lactamase superfamily~TIGRFAM: ribonuclease Z gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1261 Tresu_1262 Tresu_1262 Tresu_1262 1352649 1353404 + hypothetical protein IMG reference gene:2504608195 gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1262 Tresu_1263 Tresu_1263 Tresu_1263 1353405 1354520 + Mannose-1-phosphate guanylyltransferase COGs: COG0836 Mannose-1-phosphate guanylyltransferase~InterPro IPR005835:IPR001538~KEGG: sta:STHERM_c01790 mannose-1-phosphate guanylyltransferase~PFAM: Nucleotidyl transferase%3B Mannose-6-phosphate isomerase%2C type II%2C C-terminal~PRIAM: Mannose-1-phosphate guanylyltransferase~SPTR: Mannose-1-phosphate guanylyltransferase%3B~IMG reference gene:2504608196~PFAM: Nucleotidyl transferase~TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1263 Tresu_1264 Tresu_1264 Tresu_1264 1354551 1355510 + dTDP-4-dehydrorhamnose reductase COGs: COG1091 dTDP-4-dehydrorhamnose reductase~InterPro IPR005913~KEGG: cni:Calni_1181 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase~PRIAM: dTDP-4-dehydrorhamnose reductase~SPTR: dTDP-4-dehydrorhamnose reductase%3B~TIGRFAM: dTDP-4-dehydrorhamnose reductase~IMG reference gene:2504608197~PFAM: RmlD substrate binding domain~TIGRFAM: dTDP-4-dehydrorhamnose reductase gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1264 Tresu_1265 Tresu_1265 Tresu_1265 1355844 1356161 - hypothetical protein KEGG: sta:STHERM_c21680 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608198 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1265 Tresu_1266 Tresu_1266 Tresu_1266 1356182 1359370 - acriflavin resistance protein COGs: COG0841 Cation/multidrug efflux pump~InterPro IPR001036~KEGG: ssm:Spirs_0038 acriflavin resistance protein~PFAM: Acriflavin resistance protein~SPTR: Acriflavin resistance protein%3B~IMG reference gene:2504608199~PFAM: AcrB/AcrD/AcrF family~TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1266 Tresu_1267 Tresu_1267 Tresu_1267 1359374 1360327 - efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: ssm:Spirs_0037 efflux transporter%2C RND family%2C MFP subunit~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504608200~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1267 Tresu_1268 Tresu_1268 Tresu_1268 1360329 1361744 - outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: ssm:Spirs_0036 outer membrane efflux protein~PFAM: Outer membrane efflux protein~SPTR: Outer membrane efflux protein%3B~IMG reference gene:2504608201~PFAM: Outer membrane efflux protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1268 Tresu_1269 Tresu_1269 Tresu_1269 1361741 1363033 - regulatory protein TetR InterPro IPR001647~KEGG: ssm:Spirs_0035 transcriptional regulator%2C TetR family~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2504608202~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1269 Tresu_1270 Tresu_1270 Tresu_1270 1363251 1363979 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tde:TDE1083 RNA pseudouridylate synthase~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504608203~PFAM: RNA pseudouridylate synthase gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1270 Tresu_1271 Tresu_1271 Tresu_1271 1363986 1364966 - pseudouridine synthase%2C RluA family COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145:IPR006225~KEGG: tde:TDE1082 ribosomal large subunit pseudouridine synthase D~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Ribosomal large subunit pseudouridine synthase D%3B~TIGRFAM: Pseudouridine synthase%2C RluC/RluD~IMG reference gene:2504608204~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1271 Tresu_1272 Tresu_1272 Tresu_1272 1364967 1365479 - hypothetical protein KEGG: tde:TDE1081 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608205 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1272 Tresu_1273 Tresu_1273 Tresu_1273 1365457 1366173 - protein of unknown function UPF0001 COGs: COG0325 enzyme with a TIM-barrel fold~InterPro IPR001608:IPR011078~KEGG: sta:STHERM_c17100 putative pyridoxal 5'-phosphate-dependent enzyme~PFAM: Alanine racemase%2C N-terminal~SPTR: Predicted pyridoxal 5'-phosphate-dependent enzyme%3B~TIGRFAM: pyridoxal phosphate-dependent enzyme%2C YBL036C type~IMG reference gene:2504608206~PFAM: Alanine racemase%2C N-terminal domain~TIGRFAM: pyridoxal phosphate enzyme%2C YggS family gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1273 Tresu_1274 Tresu_1274 Tresu_1274 1366188 1367063 - Ribosomal RNA small subunit methyltransferase A COGs: COG0030 Dimethyladenosine transferase (rRNA methylation)~HAMAP: Ribosomal RNA adenine dimethylase~InterPro IPR001737:IPR011530:IPR020598~KEGG: tde:TDE1080 dimethyladenosine transferase~PFAM: Ribosomal RNA adenine methylase transferase~SMART: Ribosomal RNA adenine methylase transferase%2C N-terminal~SPTR: Ribosomal RNA small subunit methyltransferase A%3B~TIGRFAM: Ribosomal RNA adenine dimethylase~IMG reference gene:2504608207~PFAM: Ribosomal RNA adenine dimethylase~TIGRFAM: dimethyladenosine transferase gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1274 Tresu_1275 Tresu_1275 Tresu_1275 1367079 1368344 - ComEC/Rec2-related protein COGs: COG0658 membrane metal-binding protein~InterPro IPR004477~KEGG: tde:TDE1320 ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein~SPTR: ComEC/Rec2-related protein%3B~TIGRFAM: ComEC/Rec2-related protein~IMG reference gene:2504608208~PFAM: Competence protein~TIGRFAM: ComEC/Rec2-related protein gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1275 Tresu_1276 Tresu_1276 Tresu_1276 1368338 1369498 - hypothetical protein KEGG: tde:TDE1319 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608209 gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1276 Tresu_1277 Tresu_1277 Tresu_1277 1369568 1370683 - type IV pilus assembly PilZ InterPro IPR009875~KEGG: ssm:Spirs_1505 type IV pilus assembly PilZ~PFAM: Type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2504608210~PFAM: PilZ domain gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1277 Tresu_1278 Tresu_1278 Tresu_1278 1370766 1371416 + Abortive infection protein InterPro IPR003675~KEGG: bcz:BCZK2732 CAAX amino protease~PFAM: Abortive infection protein~SPTR: CAAX amino terminal protease%3B~IMG reference gene:2504608211~PFAM: CAAX amino terminal protease family gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1278 Tresu_1279 Tresu_1279 Tresu_1279 1371469 1372881 + threonine synthase COGs: COG0498 Threonine synthase~InterPro IPR001926:IPR004450~KEGG: tde:TDE2192 threonine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Threonine synthase~SPTR: Threonine synthase%2C putative%3B~TIGRFAM: Threonine synthase~IMG reference gene:2504608212~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: threonine synthase gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1279 Tresu_1280 Tresu_1280 Tresu_1280 1372950 1373510 - cytidylate kinase COGs: COG1102 Cytidylate kinase~InterPro IPR011994:IPR011892~KEGG: tde:TDE1087 cytidylate kinase~PFAM: Cytidylate kinase domain~SPTR: Putative cytidylate kinase%3B~TIGRFAM: Cytidylate kinase%2C putative~IMG reference gene:2504608213~PFAM: Cytidylate kinase~TIGRFAM: cytidylate kinase%2C putative gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1280 Tresu_1281 Tresu_1281 Tresu_1281 1373519 1374388 - Conserved hypothetical protein CHP00255 COGs: COG1561 Uncharacterized stress-induced protein~InterPro IPR013527:IPR013551:IPR005229~KEGG: tde:TDE1086 hypothetical protein~PFAM: YicC-like%2C N-terminal%3B Domain of unknown function DUF1732~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP00255~IMG reference gene:2504608214~PFAM: YicC-like family%2C N-terminal region%3B Domain of unknown function (DUF1732)~TIGRFAM: TIGR00255 family protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1281 Tresu_1282 Tresu_1282 Tresu_1282 1374398 1375897 - UDP-N-acetylmuramate--L-alanine ligase COGs: COG0773 UDP-N-acetylmuramate-alanine ligase~HAMAP: UDP-N-acetylmuramate-alanine ligase~InterPro IPR000713:IPR013221:IPR004101:IPR005758~KEGG: tde:TDE1085 UDP-N-acetylmuramate--L-alanine ligase~PFAM: Mur ligase%2C C-terminal%3B Mur ligase%2C N-terminal%3B Mur ligase%2C central~PRIAM: UDP-N-acetylmuramate--L-alanine ligase~SPTR: UDP-N-acetylmuramate--alanine ligase%3B~TIGRFAM: UDP-N-acetylmuramate-alanine ligase~IMG reference gene:2504608215~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramate--alanine ligase gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1282 Tresu_1283 Tresu_1283 Tresu_1283 1376101 1377414 - Xylose isomerase COGs: COG2115 Xylose isomerase~HAMAP: Xylose isomerase~InterPro IPR012307:IPR001998:IPR013452~KEGG: bvu:BVU_3953 xylose isomerase~PFAM: Xylose isomerase%2C TIM barrel domain~PRIAM: Xylose isomerase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Xylose isomerase%2C bacterial type~IMG reference gene:2504608216~PFAM: Xylose isomerase-like TIM barrel~TIGRFAM: xylose isomerase gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1283 Tresu_1284 Tresu_1284 Tresu_1284 1377486 1378973 - xylulokinase COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484:IPR018485:IPR006000~KEGG: plu:plu1959 xylulose kinase~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~SPTR: D-xylulokinase%3B~TIGRFAM: Xylulokinase~IMG reference gene:2504608217~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain~TIGRFAM: D-xylulose kinase gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1284 Tresu_1285 Tresu_1285 Tresu_1285 1379119 1379952 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR000005:IPR018060~KEGG: ssm:Spirs_3785 transcriptional regulator%2C AraC family~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504608218~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1285 Tresu_1286 Tresu_1286 Tresu_1286 1379955 1380383 - heat shock protein DnaJ domain protein InterPro IPR001623~KEGG: ckr:CKR_3181 hypothetical protein~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608219~PFAM: DnaJ domain gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1286 Tresu_1287 Tresu_1287 Tresu_1287 1380367 1381740 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789:IPR002078:IPR002197:IPR003593~KEGG: tde:TDE1969 sigma-54 dependent transcriptional regulator/response regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase%2C AAA+ type%2C core~SPTR: Acetoacetate metabolism regulatory protein AtoC%3B~IMG reference gene:2504608220~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1287 Tresu_1288 Tresu_1288 Tresu_1288 1381812 1382999 - PAS/PAC sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR013767:IPR003661:IPR003594:IPR000014~KEGG: ssm:Spirs_1708 PAS/PAC sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS fold~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS~SPTR: Sensory box histidine kinase%3B~TIGRFAM: PAS~IMG reference gene:2504608221~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1288 Tresu_1289 Tresu_1289 Tresu_1289 1383019 1384257 - DNA polymerase III domain-containing protein COGs: COG2812 DNA polymerase III gamma/tau subunits~KEGG: tde:TDE1971 DNA polymerase III domain-containing protein~SPTR: DNA polymerase III domain protein%3B~IMG reference gene:2504608222 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1289 Tresu_1290 Tresu_1290 Tresu_1290 1384260 1384793 - Colicin V production protein InterPro IPR003825~KEGG: tde:TDE1973 CvpA family protein~PFAM: Colicin V production%2C CvpA~SPTR: CvpA family protein%3B~IMG reference gene:2504608223~PFAM: Colicin V production protein gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1290 Tresu_1291 Tresu_1291 Tresu_1291 1384790 1385941 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase~HAMAP: N-acetylglucosaminyltransferase%2C MurG~InterPro IPR004276:IPR007235:IPR006009~KEGG: tde:TDE1974 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~PFAM: Glycosyl transferase%2C family 28%3B Glycosyl transferase%2C family 28%2C C-terminal~PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B~TIGRFAM: N-acetylglucosaminyltransferase%2C MurG~IMG reference gene:2504608224~PFAM: Glycosyltransferase family 28 N-terminal domain%3B Glycosyltransferase family 28 C-terminal domain~TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1291 Tresu_1292 Tresu_1292 Tresu_1292 1385948 1386847 - Ankyrin InterPro IPR002110~KEGG: tde:TDE2450 ankyrin repeateat-containing protein~PFAM: Ankyrin repeat~SMART: Ankyrin repeat~SPTR: Ankyrin repeat protein%3B~IMG reference gene:2504608225~PFAM: Ankyrin repeat gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1292 Tresu_1293 Tresu_1293 Tresu_1293 1386989 1387546 + hypothetical protein KEGG: ele:Elen_2487 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608226 gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1293 Tresu_1294 Tresu_1294 Tresu_1294 1387576 1388418 + ABC transporter related protein COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: apv:Apar_0681 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504608227~PFAM: ABC transporter gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1294 Tresu_1295 Tresu_1295 Tresu_1295 1388415 1389242 + Sulfate-transporting ATPase COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: shi:Shel_12810 ABC-type cobalt transport system%2C ATPase component~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504608228~PFAM: ABC transporter gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1295 Tresu_1296 Tresu_1296 Tresu_1296 1389239 1390009 + ABC-type transporter%2C integral membrane subunit COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter~InterPro IPR003339~KEGG: ols:Olsu_0259 cobalt transport protein~PFAM: Cobalt transport protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608229~PFAM: Cobalt transport protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1296 Tresu_1297 Tresu_1297 Tresu_1297 1390850 1392220 + Trigger factor COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)~HAMAP: Trigger factor~InterPro IPR008881:IPR001179:IPR008880:IPR005215~KEGG: tde:TDE1671 trigger factor~PFAM: Trigger factor%2C C-terminal%2C bacterial%3B Trigger factor%2C ribosome-binding%2C bacterial%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~SPTR: Trigger factor%3B~TIGRFAM: Trigger factor~IMG reference gene:2504608236~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase%3B Bacterial trigger factor protein (TF)%3B Bacterial trigger factor protein (TF) C-terminus~TIGRFAM: trigger factor gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1297 Tresu_1298 Tresu_1298 Tresu_1298 1392309 1392920 + ATP-dependent Clp protease proteolytic subunit COGs: COG0740 Protease subunit of ATP-dependent Clp protease~HAMAP: Peptidase S14%2C ClpP~InterPro IPR001907~KEGG: tde:TDE1672 ATP-dependent Clp protease proteolytic subunit~PFAM: Peptidase S14%2C ClpP~PRIAM: Endopeptidase Clp~SPTR: ATP-dependent Clp protease proteolytic subunit 1%3B~IMG reference gene:2504608237~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1298 Tresu_1299 Tresu_1299 Tresu_1299 1392920 1394182 + ATP-dependent Clp protease ATP-binding subunit clpX COGs: COG1219 ATP-dependent protease Clp ATPase subunit~HAMAP: Clp protease%2C ATP-binding subunit ClpX~InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593~KEGG: tde:TDE1673 ATP-dependent protease ATP-binding subunit ClpX~PFAM: ATPase%2C AAA-2%3B Zinc finger%2C C4-type%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX%3B~TIGRFAM: Clp protease%2C ATP-binding subunit ClpX~IMG reference gene:2504608238~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ClpX C4-type zinc finger~TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1299 Tresu_1300 Tresu_1300 Tresu_1300 1394229 1395347 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: tde:TDE1544 mannosyltransferase%2C putative~PFAM: Glycosyl transferase%2C group 1~SPTR: Mannosyltransferase%2C putative%3B~IMG reference gene:2504608239~PFAM: Glycosyl transferases group 1 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1300 Tresu_1301 Tresu_1301 Tresu_1301 1395396 1396562 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR011545:IPR001650:IPR014001~KEGG: ctc:CTC01856 ATP-dependent RNA helicase~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: ATP-dependent rRNA helicase RRP3%3B~IMG reference gene:2504608240~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1301 Tresu_1302 Tresu_1302 Tresu_1302 1396618 1399572 + chromosome segregation protein SMC COGs: COG1196 Chromosome segregation ATPase~InterPro IPR003395:IPR011890~KEGG: tde:TDE1496 chromosome partition protein SmC%2C putative~PFAM: RecF/RecN/SMC~SPTR: Chromosome segregation protein SMC%3B~TIGRFAM: Chromosome segregation protein SMC~IMG reference gene:2504608241~PFAM: RecF/RecN/SMC N terminal domain gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1302 Tresu_1303 Tresu_1303 Tresu_1303 1399569 1399940 + hypothetical protein KEGG: tde:TDE1497 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608242 gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1303 Tresu_1304 Tresu_1304 Tresu_1304 1399937 1401430 + hypothetical protein KEGG: tde:TDE1498 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608243 gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1304 Tresu_1305 Tresu_1305 Tresu_1305 1401447 1402142 + protein of unknown function DUF541 COGs: COG2968 conserved hypothetical protein~InterPro IPR007497~KEGG: dev:DhcVS_974 hypothetical periplasmic protein~PFAM: Protein of unknown function DUF541~SPTR: Hypothetical periplasmic protein%3B~IMG reference gene:2504608244~PFAM: Protein of unknown function (DUF541) gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1305 Tresu_1306 Tresu_1306 Tresu_1306 1402175 1403512 + Seryl-tRNA synthetase COGs: COG0172 Seryl-tRNA synthetase~HAMAP: Seryl-tRNA synthetase%2C class IIa~InterPro IPR015866:IPR002314:IPR002317~KEGG: tde:TDE2307 seryl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Seryl-tRNA synthetase%2C class IIa%2C N-terminal~PRIAM: Serine--tRNA ligase~SPTR: Seryl-tRNA synthetase%3B~TIGRFAM: Seryl-tRNA synthetase%2C class IIa~IMG reference gene:2504608245~PFAM: Seryl-tRNA synthetase N-terminal domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: seryl-tRNA synthetase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1306 Tresu_1307 Tresu_1307 Tresu_1307 1403530 1404627 + protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: sta:STHERM_c14310 hypothetical protein~PFAM: Uncharacterised protein family UPF0118~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608246~PFAM: Domain of unknown function DUF20 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1307 Tresu_1308 Tresu_1308 Tresu_1308 1404658 1405635 - hypothetical protein IMG reference gene:2504608247 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1308 Tresu_1309 Tresu_1309 Tresu_1309 1405635 1406267 - hypothetical protein IMG reference gene:2504608248 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1309 Tresu_1310 Tresu_1310 Tresu_1310 1406419 1407129 + protein of unknown function UPF0005 COGs: COG0670 Integral membrane protein interacts with FtsH~InterPro IPR006214~KEGG: ect:ECIAI39_0762 conserved hypothetical protein%3B putative inner membrane protein~PFAM: Inhibitor of apoptosis-promoting Bax1-related~SPTR: Inner membrane protein YbhL%3B~IMG reference gene:2504608249~PFAM: Uncharacterised protein family UPF0005 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1310 Tresu_1311 Tresu_1311 Tresu_1311 1407133 1409580 - helicase c2 COGs: COG1199 Rad3-related DNA helicase~InterPro IPR006554:IPR006555~KEGG: ssm:Spirs_1712 helicase C2~SMART: Helicase%2C ATP-dependent%2C c2 type%3B Helicase-like%2C DEXD box c2 type~SPTR: Helicase c2%3B~IMG reference gene:2504608250~PFAM: Helicase conserved C-terminal domain%3B Protein of unknown function (DUF2466) gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1311 Tresu_1312 Tresu_1312 Tresu_1312 1409854 1410795 + L-lactate dehydrogenase COGs: COG0039 Malate/lactate dehydrogenase~HAMAP: L-lactate dehydrogenase~InterPro IPR001236:IPR022383:IPR011304~KEGG: tpd:Teth39_1997 L-lactate dehydrogenase~PFAM: Lactate/malate dehydrogenase%2C N-terminal%3B Lactate/malate dehydrogenase%2C C-terminal~PRIAM: L-lactate dehydrogenase~SPTR: L-lactate dehydrogenase%3B~TIGRFAM: L-lactate dehydrogenase~IMG reference gene:2504608251~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: L-lactate dehydrogenase gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1312 Tresu_1313 Tresu_1313 Tresu_1313 1410796 1412184 + Fumarate hydratase class II COGs: COG0114 Fumarase~HAMAP: Fumarate hydratase%2C class II~InterPro IPR022761:IPR018951:IPR005677~KEGG: afn:Acfer_2053 fumarate hydratase%2C class II~PFAM: Lyase 1%2C N-terminal%3B Fumarase C%2C C-terminal~PRIAM: Fumarate hydratase~SPTR: Fumarase%3B~TIGRFAM: Fumarate hydratase%2C class II~IMG reference gene:2504608252~PFAM: Lyase%3B Fumarase C C-terminus~TIGRFAM: fumarate hydratase%2C class II gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1313 Tresu_1314 Tresu_1314 Tresu_1314 1412249 1413088 + CoB--CoM heterodisulfide reductase COGs: COG2048 Heterodisulfide reductase subunit B~InterPro IPR004017~KEGG: ipo:Ilyop_2566 CoB--CoM heterodisulfide reductase~PFAM: Cysteine-rich domain~PRIAM: CoB--CoM heterodisulfide reductase~SPTR: Heterodisulfide reductase%2C subunit B%3B~IMG reference gene:2504608253~PFAM: Cysteine-rich domain gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1314 Tresu_1315 Tresu_1315 Tresu_1315 1413081 1413476 + heterodisulfide reductase subunit C-like protein COGs: COG1150 Heterodisulfide reductase subunit C~KEGG: ipo:Ilyop_2565 heterodisulfide reductase subunit C-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608254 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1315 Tresu_1316 Tresu_1316 Tresu_1316 1413487 1415499 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterPro IPR003953:IPR001450~KEGG: ipo:Ilyop_2564 FAD dependent oxidoreductase~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B 4Fe-4S binding domain~SPTR: Heterodisulfide reductase%2C subunit A and related polyferredoxins%3B~IMG reference gene:2504608255~PFAM: FAD binding domain%3B 4Fe-4S binding domain gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1316 Tresu_1317 Tresu_1317 Tresu_1317 1415552 1415992 + methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: ipo:Ilyop_2563 methyl-viologen-reducing hydrogenase delta subunit~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit~SPTR: Coenzyme F420-reducing hydrogenase%2C delta subunit%3B~IMG reference gene:2504608256~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1317 Tresu_1318 Tresu_1318 Tresu_1318 1415977 1416939 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: ipo:Ilyop_2562 4Fe-4S ferredoxin iron-sulfur binding domain protein~PFAM: 4Fe-4S binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608257 gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1318 Tresu_1319 Tresu_1319 Tresu_1319 1416939 1417976 + 4Fe-4S ferredoxin%2C iron-sulfur binding protein KEGG: ipo:Ilyop_2561 4Fe-4S ferredoxin%2C iron-sulfur binding protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608258 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1319 Tresu_1320 Tresu_1320 Tresu_1320 1417993 1418823 + Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulfur cluster binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterPro IPR008333:IPR001433:IPR019480~KEGG: ipo:Ilyop_2560 oxidoreductase FAD/NAD(P)-binding domain protein~PFAM: Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain%3B Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase%2C FAD-binding domain~SPTR: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases%3B~IMG reference gene:2504608259~PFAM: Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1320 Tresu_1321 Tresu_1321 Tresu_1321 1418906 1419589 + ferredoxin COGs: COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit~KEGG: ipo:Ilyop_2559 ferredoxin~SPTR: CO dehydrogenase/acetyl-CoA synthase alpha subunit%3B~IMG reference gene:2504608260 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1321 Tresu_1322 Tresu_1322 Tresu_1322 1419631 1421274 + L-aspartate oxidase COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR003953~KEGG: ipo:Ilyop_2558 fumarate reductase/succinate dehydrogenase flavoprotein domain protein~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~PRIAM: L-aspartate oxidase~SPTR: L-aspartate oxidase%3B~IMG reference gene:2504608261~PFAM: FAD binding domain gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1322 Tresu_1323 Tresu_1323 Tresu_1323 1421371 1422966 + putative methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004010:IPR003660~KEGG: taf:THA_537 methyl-accepting chemotaxis protein~PFAM: Cache%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504608262~PFAM: Cache domain gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1323 Tresu_1324 Tresu_1324 Tresu_1324 1423172 1424209 - glycosyl transferase family 2 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis~InterPro IPR001173~KEGG: bth:BT_1709 putative glycosyltransferase~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608263~PFAM: Glycosyl transferase family 2 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1324 Tresu_1325 Tresu_1325 Tresu_1325 1424169 1425473 - hypothetical protein KEGG: pru:PRU_0444 putative WbuO protein~SPTR: Predicted protein%3B~IMG reference gene:2504608264 gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1325 Tresu_1326 Tresu_1326 Tresu_1326 1425442 1425618 - pseudogene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1326 Tresu_1327 Tresu_1327 Tresu_1327 1425694 1426892 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504608266~PFAM: Integrase core domain%3B Transposase gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1327 Tresu_1328 Tresu_1328 Tresu_1328 1426937 1427650 - glycosyl transferase family protein COGs: COG1216 glycosyltransferase~KEGG: ecl:EcolC_1610 glycosyl transferase family protein~SPTR: Putative glycosyltransferase%3B~IMG reference gene:2504608267~PFAM: Glycosyl transferase family 2 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1328 Tresu_1329 Tresu_1329 Tresu_1329 1427647 1428801 - hypothetical protein KEGG: ecl:EcolC_1609 hypothetical protein~SPTR: Putative Wzy%3B~IMG reference gene:2504608268 gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1329 Tresu_1330 Tresu_1330 Tresu_1330 1428828 1429481 - hypothetical protein IMG reference gene:2504608269 gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1330 Tresu_1331 Tresu_1331 Tresu_1331 1429655 1430890 - CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase COGs: COG1887 Putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC~InterPro IPR007554~KEGG: gtn:GTNG_3260 putative glycerophosphotransferase~PFAM: CDP-glycerol glycerophosphotransferase~SPTR: Putative glycerophosphotransferase%3B~IMG reference gene:2504608270~PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1331 Tresu_1332 Tresu_1332 Tresu_1332 1430883 1432364 - polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: snp:SPAP_1297 O-antigen and teichoic acid exporter membrane protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608271~PFAM: Polysaccharide biosynthesis protein gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1332 Tresu_1333 Tresu_1333 Tresu_1333 1432382 1433230 - LicD family protein COGs: COG3475 LPS biosynthesis protein~InterPro IPR007074~KEGG: lbu:LBUL_1801 LPS biosynthesis protein~PFAM: LicD-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608272~PFAM: LICD Protein Family gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1333 Tresu_1334 Tresu_1334 Tresu_1334 1433230 1433622 - glycerol-3-phosphate cytidylyltransferase COGs: COG0615 Cytidylyltransferase~InterPro IPR004820:IPR004821:IPR006409~KEGG: fsu:Fisuc_0969 glycerol-3-phosphate cytidylyltransferase~PFAM: Cytidylyltransferase~PRIAM: Glycerol-3-phosphate cytidylyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Glycerol-3-phosphate cytidylyltransferase%3B Cytidyltransferase-related~IMG reference gene:2504608273~PFAM: Cytidylyltransferase~TIGRFAM: cytidyltransferase-related domain%3B glycerol-3-phosphate cytidylyltransferase gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1334 Tresu_1335 Tresu_1335 Tresu_1335 1433624 1434052 - hypothetical protein IMG reference gene:2504608274 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1335 Tresu_1336 Tresu_1336 Tresu_1336 1434202 1434525 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ssm:Spirs_3965 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504608275~PFAM: Helix-turn-helix gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1336 Tresu_1337 Tresu_1337 Tresu_1337 1434737 1437064 + Methionyl-tRNA synthetase COGs: COG0143 Methionyl-tRNA synthetase~HAMAP: Methionyl-tRNA synthetase~InterPro IPR015413:IPR002547:IPR014758~KEGG: tde:TDE1063 methionyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B tRNA-binding domain~PRIAM: Methionine--tRNA ligase~SPTR: Methionyl-tRNA synthetase%3B~TIGRFAM: Methionyl-tRNA synthetase%2C class Ia~IMG reference gene:2504608276~PFAM: tRNA synthetases class I (M)%3B Anticodon-binding domain%3B Putative tRNA binding domain~TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain%3B methionyl-tRNA synthetase gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1337 Tresu_1338 Tresu_1338 Tresu_1338 1437083 1438210 + Methicillin resistance protein COGs: COG2348 Uncharacterized protein involved in methicillin resistance~InterPro IPR003447~KEGG: ssm:Spirs_2888 methicillin resistance protein~PFAM: Methicillin resistance protein~SPTR: FemAB family protein%3B~IMG reference gene:2504608277~PFAM: FemAB family gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1338 Tresu_1339 Tresu_1339 Tresu_1339 1438216 1440195 - glycoside hydrolase family 57 InterPro IPR004300:IPR015179~KEGG: tde:TDE1395 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 57%2C N-terminal%3B Alpha-amylase/4-alpha-glucanotransferase%2C C-terminal~SPTR: Glycosyl hydrolase%2C family 57%3B~IMG reference gene:2504608278~PFAM: Glycosyl hydrolase family 57%3B Domain of unknown function (DUF1926) gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1339 Tresu_1340 Tresu_1340 Tresu_1340 1440205 1440807 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: apr:Apre_1322 electron transport complex%2C RnfABCDGE type%2C B subunit~PFAM: 4Fe-4S binding domain~SPTR: Electron transport complex%2C RnfABCDGE type%2C B subunit%3B~IMG reference gene:2504608279 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1340 Tresu_1341 Tresu_1341 Tresu_1341 1440804 1441361 - hypothetical protein IMG reference gene:2504608280 gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1341 Tresu_1342 Tresu_1342 Tresu_1342 1441363 1441977 - hypothetical protein KEGG: tde:TDE1393 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504608281 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1342 Tresu_1343 Tresu_1343 Tresu_1343 1442005 1442508 - hypothetical protein IMG reference gene:2504608282 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1343 Tresu_1344 Tresu_1344 Tresu_1344 1442510 1443586 - NQR2/RnfD/RnfE family protein COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD~KEGG: tde:TDE1391 NQR2/RnfD/RnfE family protein~SPTR: NQR2/RnfD/RnfE family protein%3B~IMG reference gene:2504608283~PFAM: NQR2%2C RnfD%2C RnfE family gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1344 Tresu_1345 Tresu_1345 Tresu_1345 1443596 1444870 - Soluble ligand binding domain protein COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC~InterPro IPR019554~KEGG: tde:TDE1390 hypothetical protein~PFAM: Soluble ligand binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608284~PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1345 Tresu_1346 Tresu_1346 Tresu_1346 1444931 1446325 - hypothetical protein KEGG: tde:TDE1389 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608285 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1346 Tresu_1347 Tresu_1347 Tresu_1347 1446327 1446800 - acid phosphatase/vanadium-dependent haloperoxidase related protein COGs: COG1963 conserved hypothetical protein~InterPro IPR003832~KEGG: tde:TDE1388 hypothetical protein~PFAM: Acid phosphatase/vanadium-dependent haloperoxidase-related~SPTR: Integral membrane protein%3B~IMG reference gene:2504608286~PFAM: Divergent PAP2 family gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1347 Tresu_1348 Tresu_1348 Tresu_1348 1446847 1447791 + pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tpp:TPASS_0154 hypothetical protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608287~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1348 Tresu_1349 Tresu_1349 Tresu_1349 1447795 1448658 + hypothetical protein KEGG: tde:TDE1967 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608288 gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1349 Tresu_1350 Tresu_1350 Tresu_1350 1448744 1449868 + poly(A) polymerase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR002646:IPR010206~KEGG: tde:TDE1726 polyA polymerase family protein~PFAM: Poly A polymerase%2C head domain~PRIAM: Polynucleotide adenylyltransferase~SPTR: PolyA polymerase family protein%3B~TIGRFAM: Poly(A) polymerase%2C PcnB~IMG reference gene:2504608289~PFAM: Poly A polymerase head domain~TIGRFAM: poly(A) polymerase gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1350 Tresu_1351 Tresu_1351 Tresu_1351 1449865 1450794 - alpha/beta hydrolase fold protein COGs: COG2267 Lysophospholipase~InterPro IPR000073~KEGG: tde:TDE2146 alpha/beta fold family hydrolase~PFAM: Alpha/beta hydrolase fold-1~SPTR: Hydrolase%2C alpha/beta fold family%3B~IMG reference gene:2504608290~PFAM: Putative lysophospholipase gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1351 Tresu_1352 Tresu_1352 Tresu_1352 1450864 1451949 - tryptophanyl-tRNA synthetase COGs: COG0180 Tryptophanyl-tRNA synthetase~InterPro IPR002305:IPR002306~KEGG: ssm:Spirs_4220 tryptophanyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib~PRIAM: Tryptophan--tRNA ligase~SPTR: Tryptophanyl-tRNA synthetase%3B~TIGRFAM: Tryptophanyl-tRNA synthetase%2C class Ib~IMG reference gene:2504608291~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tryptophanyl-tRNA synthetase gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1352 Tresu_1353 Tresu_1353 Tresu_1353 1452054 1453535 - Glycogen synthase COGs: COG0297 Glycogen synthase~HAMAP: Glycogen/starch synthases%2C ADP-glucose type~InterPro IPR013534:IPR001296:IPR011835~KEGG: tde:TDE1582 glycogen synthase~PFAM: Starch synthase%2C catalytic domain%3B Glycosyl transferase%2C group 1~PRIAM: Starch synthase~SPTR: Glycogen synthase%3B~TIGRFAM: Glycogen/starch synthases%2C ADP-glucose type~IMG reference gene:2504608292~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1~TIGRFAM: glycogen/starch synthases%2C ADP-glucose type gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1353 Tresu_1354 Tresu_1354 Tresu_1354 1453532 1454737 - Aspartate transaminase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: dat:HRM2_31380 aspartate aminotransferase~PFAM: Aminotransferase%2C class I/classII~PRIAM: Aspartate transaminase~SPTR: Putative aspartate/tyrosine/aromatic acid aminotransferase%3B~IMG reference gene:2504608293~PFAM: Aminotransferase class I and II gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1354 Tresu_1355 Tresu_1355 Tresu_1355 1455168 1456079 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608294 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1355 Tresu_1356 Tresu_1356 Tresu_1356 1456096 1456425 - hypothetical protein IMG reference gene:2504608295 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1356 Tresu_1357 Tresu_1357 Tresu_1357 1457271 1458953 - ABC-type transporter%2C integral membrane subunit COGs: COG4211 ABC-type glucose/galactose transport system permease component~InterPro IPR001851~KEGG: tde:TDE2215 galactoside ABC transporter%2C permease protein%2C putative~PFAM: ABC transporter permease~SPTR: Galactoside ABC transporter%2C permease protein%2C putative%3B~IMG reference gene:2504608298~PFAM: Branched-chain amino acid transport system / permease component gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1357 Tresu_1358 Tresu_1358 Tresu_1358 1458971 1460464 - Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tde:TDE2216 galactoside ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Galactose/methyl galactoside import ATP-binding protein MglA%3B~IMG reference gene:2504608299~PFAM: ABC transporter gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1358 Tresu_1359 Tresu_1359 Tresu_1359 1460585 1461790 - galactose/glucose-binding lipoprotein COGs: COG1879 ABC-type sugar transport system periplasmic component~KEGG: tde:TDE2217 galactose/glucose-binding lipoprotein~SPTR: Galactose/glucose-binding lipoprotein%3B~IMG reference gene:2504608300 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1359 Tresu_1360 Tresu_1360 Tresu_1360 1462105 1463133 + transcriptional regulator%2C LacI family COGs: COG1879 ABC-type sugar transport system periplasmic component~InterPro IPR000843~KEGG: sta:STHERM_c20570 transcriptional regulatory protein~PFAM: HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504608301~PFAM: Bacterial regulatory proteins%2C lacI family gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1360 Tresu_1361 Tresu_1361 Tresu_1361 1463227 1465695 - glycosyltransferase 36 COGs: COG3459 Cellobiose phosphorylase~InterPro IPR009342:IPR010383:IPR010403~KEGG: cth:Cthe_0275 cellobiose phosphorylase~PFAM: Glycosyltransferase 36%3B Putative carbohydrate binding%3B Glycosyltransferase 36 associated~SPTR: Cellobiose phosphorylase%3B~IMG reference gene:2504608302~PFAM: Glycosyltransferase family 36%3B Putative carbohydrate binding domain%3B Glycosyltransferase 36 associated family gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1361 Tresu_1362 Tresu_1362 Tresu_1362 1465849 1467189 + Ankyrin InterPro IPR002110~KEGG: aar:Acear_1168 ankyrin~PFAM: Ankyrin repeat~SPTR: FOG: Ankyrin repeat%3B~IMG reference gene:2504608303~PFAM: Ankyrin repeat gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1362 Tresu_1363 Tresu_1363 Tresu_1363 1467192 1467761 + methyltransferase COGs: COG0742 N6-adenine-specific methylase~InterPro IPR004398~KEGG: tde:TDE1881 methyltransferase%2C putative~PFAM: RNA methyltransferase%2C RsmD~SPTR: Methyltransferase%2C putative%3B~TIGRFAM: RNA methyltransferase%2C RsmD~IMG reference gene:2504608304~PFAM: Conserved hypothetical protein 95~TIGRFAM: RNA methyltransferase%2C RsmD family gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1363 Tresu_1364 Tresu_1364 Tresu_1364 1467838 1468176 + hypothetical protein KEGG: tde:TDE2072 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608305 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1364 Tresu_1365 Tresu_1365 Tresu_1365 1468189 1469334 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR001440:IPR013105:IPR019734~KEGG: ssm:Spirs_3144 tetratricopeptide TPR_2 repeat protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504608306~PFAM: Tetratricopeptide repeat gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1365 Tresu_1366 Tresu_1366 Tresu_1366 1469345 1470373 + Ribosomal RNA large subunit methyltransferase N COGs: COG0820 Fe-S-cluster redox enzyme~HAMAP: Ribosomal RNA large subunit methyltransferase RlmN%3B~InterPro IPR007197:IPR004383~KEGG: tde:TDE2074 radical SAM protein~PFAM: Radical SAM~SPTR: Ribosomal RNA large subunit methyltransferase N%3B~TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN%3B~IMG reference gene:2504608307~PFAM: Radical SAM superfamily~TIGRFAM: 23S rRNA m2A2503 methyltransferase gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1366 Tresu_1367 Tresu_1367 Tresu_1367 1470443 1470652 + hypothetical protein IMG reference gene:2504608308 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1367 Tresu_1368 Tresu_1368 Tresu_1368 1470659 1471603 + Glyoxylate reductase COGs: COG1052 Lactate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: cce:Ccel_3425 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain~PRIAM: Glyoxylate reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608309~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1368 Tresu_1369 Tresu_1369 Tresu_1369 1471678 1472964 + homoaconitate hydratase family protein COGs: COG0065 3-isopropylmalate dehydratase large subunit~InterPro IPR001030:IPR011826:IPR006251~KEGG: ccb:Clocel_2602 homoaconitate hydratase family protein~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha~SPTR: 3-isopropylmalate dehydratase large subunit%3B~TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase%2C large subunit%2C subgroup%3B Homoaconitase/3-isopropylmalate dehydratase%2C large subunit%2C prokaryotic~IMG reference gene:2504608310~PFAM: Aconitase family (aconitate hydratase)~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit%3B homoaconitate hydratase family protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1369 Tresu_1370 Tresu_1370 Tresu_1370 1472994 1473527 + aconitate hydratase domain-containing protein COGs: COG0066 3-isopropylmalate dehydratase small subunit~InterPro IPR000573~KEGG: ccb:Clocel_2601 aconitate hydratase domain-containing protein~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel~SPTR: 3-isopropylmalate dehydratase small subunit 2%3B~IMG reference gene:2504608311~PFAM: Aconitase C-terminal domain~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1370 Tresu_1371 Tresu_1371 Tresu_1371 1473787 1474626 + transcriptional regulator%2C TrmB COGs: COG1378 transcriptional regulator protein~InterPro IPR002831~KEGG: str:Sterm_1982 transcriptional regulator%2C TrmB~PFAM: Transcription regulator TrmB%2C N-terminal~SPTR: TrmB family sugar-specific transcriptional regulator%3B~IMG reference gene:2504608312~PFAM: Sugar-specific transcriptional regulator TrmB gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1371 Tresu_1372 Tresu_1372 Tresu_1372 1474628 1475983 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: cbt:CLH_1898 mate efflux family protein~PFAM: Multi antimicrobial extrusion protein~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504608313~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1372 Tresu_1373 Tresu_1373 Tresu_1373 1476005 1477405 + Alpha-amylase COGs: COG0366 Glycosidase~InterPro IPR006047:IPR006589~KEGG: sds:SDEG_0325 alpha-amylase precursor~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic domain~PRIAM: Alpha-amylase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain~SPTR: Alpha-amylase (1%2C4-alpha-D-glucanglucanohydrolase)%3B~IMG reference gene:2504608314~PFAM: Alpha amylase%2C catalytic domain gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1373 Tresu_1374 Tresu_1374 Tresu_1374 1477536 1479533 + Alpha-glucosidase COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase~InterPro IPR000322~KEGG: bpb:bpr_I2860 glycoside hydrolase family 31 Gh31D~PFAM: Glycoside hydrolase%2C family 31~PRIAM: Alpha-glucosidase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608315~PFAM: Glycosyl hydrolases family 31 gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1374 Tresu_1375 Tresu_1375 Tresu_1375 1479576 1480073 - CMP/dCMP deaminase zinc-binding protein COGs: COG2131 Deoxycytidylate deaminase~InterPro IPR002125~KEGG: tde:TDE2193 deoxycytidylate deaminase%2C putative~PFAM: CMP/dCMP deaminase%2C zinc-binding~SPTR: dCMP deaminase%3B~IMG reference gene:2504608316~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1375 Tresu_1376 Tresu_1376 Tresu_1376 1480255 1481559 - Xanthine/uracil/vitamin C permease COGs: COG2252 Permease~InterPro IPR006043~KEGG: tde:TDE1360 xanthine/uracil permease family protein~PFAM: Xanthine/uracil/vitamin C permease~SPTR: Putative integral membrane protein%3B~IMG reference gene:2504608317~PFAM: Permease family gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1376 Tresu_1377 Tresu_1377 Tresu_1377 1481922 1483397 + hypothetical protein SPTR: GG25361%2C isoform B%3B~IMG reference gene:2504608318 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1377 Tresu_1378 Tresu_1378 Tresu_1378 1483816 1485393 - glutamyl-tRNA synthetase COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase~InterPro IPR020058:IPR004527~KEGG: tde:TDE0204 glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~PRIAM: Glutamate--tRNA ligase~SPTR: Glutamyl-tRNA synthetase%3B~TIGRFAM: Glutamyl-tRNA synthetase%2C class Ic%2C bacterial/mitochondrial~IMG reference gene:2504608319~PFAM: tRNA synthetases class I (E and Q)%2C catalytic domain~TIGRFAM: glutamyl-tRNA synthetase%2C bacterial family gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1378 Tresu_1379 Tresu_1379 Tresu_1379 1486053 1486781 + Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tde:TDE1852 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504608320~PFAM: ABC transporter gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1379 Tresu_1380 Tresu_1380 Tresu_1380 1486801 1487178 + protein of unknown function DUF307 COGs: COG3304 membrane protein~InterPro IPR005185~KEGG: ele:Elen_2694 protein of unknown function DUF307~PFAM: Protein of unknown function DUF307~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608321~PFAM: Domain of unknown function (DUF307) gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1380 Tresu_1381 Tresu_1381 Tresu_1381 1487183 1487482 - plasmid maintenance system antidote protein%2C XRE family COGs: COG3093 Plasmid maintenance system antidote protein~InterPro IPR001387:IPR013430~KEGG: tde:TDE1610 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~TIGRFAM: Addiction module antidote protein%2C HigA~IMG reference gene:2504608322~PFAM: Helix-turn-helix~TIGRFAM: addiction module antidote protein%2C HigA family gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1381 Tresu_1382 Tresu_1382 Tresu_1382 1487529 1488080 - hypothetical protein IMG reference gene:2504608323 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1382 Tresu_1383 Tresu_1383 Tresu_1383 1488061 1488270 - pseudogene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1383 Tresu_1384 Tresu_1384 Tresu_1384 1488522 1489706 + nucleotide sugar dehydrogenase COGs: COG1004 UDP-glucose 6-dehydrogenase~InterPro IPR001732:IPR014026:IPR014027:IPR017476~KEGG: sbc:SbBS512_E1203 UDP-glucose 6-dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal%3B UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal~PRIAM: UDP-glucose 6-dehydrogenase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Nucleotide sugar dehydrogenase~IMG reference gene:2504608326~PFAM: UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C central domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C UDP binding domain~TIGRFAM: nucleotide sugar dehydrogenase gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1384 Tresu_1385 Tresu_1385 Tresu_1385 1489716 1490771 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bpr:GBP346_A0575 glycosyl transferase%2C group 1 family~PFAM: Glycosyl transferase%2C group 1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608327~PFAM: Glycosyl transferases group 1 gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1385 Tresu_1386 Tresu_1386 Tresu_1386 1490964 1491824 + flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001029~KEGG: ssm:Spirs_2597 flagellin domain protein~PFAM: Flagellin%2C D0/D1 domain~SPTR: Flagellar filament 31.3 kDa core protein%3B~IMG reference gene:2504608328~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1386 Tresu_1387 Tresu_1387 Tresu_1387 1492173 1493027 + flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001029~KEGG: ssm:Spirs_2598 flagellin domain protein~PFAM: Flagellin%2C D0/D1 domain~SPTR: Flagellar filament 30.7 kDa core protein%3B~IMG reference gene:2504608329~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1387 Tresu_1388 Tresu_1388 Tresu_1388 1493174 1493551 + flagellar protein FlaG protein COGs: COG1334 Uncharacterized flagellar protein FlaG~InterPro IPR005186~KEGG: tde:TDE1473 flagellin FlaG%2C putative~PFAM: Flagellar protein FlaG protein~SPTR: Flagellin FlaG%2C putative%3B~IMG reference gene:2504608330~PFAM: FlaG protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1388 Tresu_1389 Tresu_1389 Tresu_1389 1493551 1495635 + flagellar hook-associated 2 domain-containing protein COGs: COG1345 Flagellar capping protein~InterPro IPR003481:IPR010809~KEGG: tde:TDE1472 flagellar hook-associated protein FliD~PFAM: Flagellar hook-associated 2%2C C-terminal%3B Flagellar hook-associated protein 2%2C N-terminal~SPTR: Flagellar hook-associated protein 2%3B~IMG reference gene:2504608331~PFAM: Flagellar hook-associated protein 2 C-terminus gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1389 Tresu_1390 Tresu_1390 Tresu_1390 1495645 1496244 + hypothetical protein KEGG: tpp:TPASS_0873 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608332 gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1390 Tresu_1391 Tresu_1391 Tresu_1391 1496250 1497326 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: sta:STHERM_c07690 hypothetical protein~PFAM: Type IV pilus assembly PilZ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608333~PFAM: PilZ domain gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1391 Tresu_1392 Tresu_1392 Tresu_1392 1497347 1497616 + hypothetical protein KEGG: tpp:TPASS_0874 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608334 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1392 Tresu_1393 Tresu_1393 Tresu_1393 1497633 1498079 + Uncharacterized protein family UPF0079%2C ATPase COGs: COG0802 ATPase or kinase~InterPro IPR003442~KEGG: tde:TDE1469 hypothetical protein~PFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~IMG reference gene:2504608335~PFAM: Uncharacterised P-loop hydrolase UPF0079~TIGRFAM: ATPase%2C YjeE family gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1393 Tresu_1394 Tresu_1394 Tresu_1394 1498081 1498764 + universal protein YeaZ COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone~InterPro IPR000905:IPR022496~KEGG: ssm:Spirs_2605 peptidase M22 glycoprotease~PFAM: Peptidase M22%2C glycoprotease~SPTR: Peptidase M22 glycoprotease%3B~TIGRFAM: Conserved hypothetical protein CHP03725%2C YeaZ~IMG reference gene:2504608336~PFAM: Glycoprotease family~TIGRFAM: universal bacterial protein YeaZ gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1394 Tresu_1395 Tresu_1395 Tresu_1395 1498786 1499004 - carbon storage regulator%2C CsrA COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing)~HAMAP: Carbon storage regulator~InterPro IPR003751~KEGG: ssm:Spirs_2607 carbon storage regulator%2C CsrA~PFAM: Carbon storage regulator~SPTR: Carbon storage regulator homolog%3B~TIGRFAM: Carbon storage regulator~IMG reference gene:2504608337~PFAM: Global regulator protein family~TIGRFAM: carbon storage regulator (csrA) gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1395 Tresu_1396 Tresu_1396 Tresu_1396 1499004 1499447 - Flagellar assembly factor fliW COGs: COG1699 conserved hypothetical protein~HAMAP: Flagellar assembly factor FliW~InterPro IPR003775~KEGG: tde:TDE2354 flagellar assembly protein FliW~PFAM: Flagellar assembly factor FliW~SPTR: Flagellar assembly factor fliW%3B~IMG reference gene:2504608338~PFAM: FliW protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1396 Tresu_1397 Tresu_1397 Tresu_1397 1499483 1500730 - flagellar hook-associated protein 3 COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001029:IPR010810:IPR013384~KEGG: tde:TDE2353 flagellar hook-associated protein FlgL~PFAM: Flagellin%2C D0/D1 domain%3B Flagellin hook%2C IN motif~SPTR: Flagellar hook-associated protein 3%3B~TIGRFAM: Flagellar hook-associated protein 3~IMG reference gene:2504608339~PFAM: Bacterial flagellin N-terminal helical region~TIGRFAM: flagellar hook-associated protein 3 gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1397 Tresu_1398 Tresu_1398 Tresu_1398 1500755 1502626 - flagellar hook-associated protein FlgK COGs: COG1256 Flagellar hook-associated protein~InterPro IPR001444:IPR010810:IPR010930:IPR002371~KEGG: tde:TDE2352 flagellar hook-associated protein FlgK~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellin hook%2C IN motif%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar hook-associated protein FlgK%3B~TIGRFAM: Flagellar hook-associated protein%2C FlgK~IMG reference gene:2504608340~PFAM: Flagellin hook IN motif%3B Domain of unknown function (DUF1078)~TIGRFAM: flagellar hook-associated protein FlgK gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1398 Tresu_1399 Tresu_1399 Tresu_1399 1502642 1503085 - hypothetical protein KEGG: tde:TDE2351 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608341~PFAM: FlgN protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1399 Tresu_1400 Tresu_1400 Tresu_1400 1503281 1503841 - Flagellar protein FlgJ InterPro IPR019301~KEGG: tde:TDE1008 flagellar protein%2C putative~PFAM: Flagellar protein FlgJ%2C N-terminal~SPTR: Putative flagellar protein%3B~IMG reference gene:2504608342~PFAM: Rod binding protein gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1400 Tresu_1401 Tresu_1401 Tresu_1401 1504046 1504840 - flagellar basal-body rod protein FlgG COGs: COG4786 Flagellar basal body rod protein~InterPro IPR001444:IPR010930:IPR020013:IPR012834~KEGG: tde:TDE1007 flagellar basal body rod protein FlgG~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgG%3B~TIGRFAM: Flagellar basal-body rod FlgG%3B Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504608343~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: fagellar hook-basal body proteins%3B flagellar basal-body rod protein FlgG%2C Gram-negative bacteria gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1401 Tresu_1402 Tresu_1402 Tresu_1402 1504857 1505657 - flagellar basal-body rod protein FlgF COGs: COG4786 Flagellar basal body rod protein~InterPro IPR001444:IPR010930:IPR020013:IPR012836~KEGG: tde:TDE1006 flagellar basal-body rod protein FlgG~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgG%3B~TIGRFAM: Flagellar basal-body rod FlgF%3B Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504608344~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body proteins gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1402 Tresu_1403 Tresu_1403 Tresu_1403 1505822 1507234 + diguanylate cyclase/phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR000160:IPR001633~KEGG: cdf:CD1476 putative signaling protein~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SPTR: Putative signaling protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504608345~PFAM: EAL domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1403 Tresu_1404 Tresu_1404 Tresu_1404 1507400 1508692 + glucose-1-phosphate adenylyltransferase COGs: COG0448 ADP-glucose pyrophosphorylase~InterPro IPR005835:IPR011831~KEGG: tde:TDE2035 glucose-1-phosphate adenylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate adenylyltransferase~SPTR: Glucose-1-phosphate adenylyltransferase%3B~TIGRFAM: Glucose-1-phosphate adenylyltransferase~IMG reference gene:2504608346~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate adenylyltransferase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1404 Tresu_1405 Tresu_1405 Tresu_1405 1508913 1510682 - transcription termination factor Rho COGs: COG1158 Transcription termination factor~InterProIPR011112:IPR011113:IPR000194:IPR011129:IPR 003593:IPR004665~KEGG: tpp:TPASS_0254 transcription termination factor Rho~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B Rho termination factor%2C RNA-binding%3B Rho termination factor%2C N-terminal~SMART: Cold shock protein%3B Rho termination factor%2C N-terminal%3B ATPase%2C AAA+ type%2C core~SPTR: Transcription termination factor Rho%3B~TIGRFAM: Transcription termination factor Rho~IMG reference gene:2504608347~PFAM: Rho termination factor%2C N-terminal domain%3B Rho termination factor%2C RNA-binding domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: transcription termination factor Rho gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1405 Tresu_1406 Tresu_1406 Tresu_1406 1510935 1511351 - protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE1707 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608348~PFAM: Protein of unknown function%2C DUF583 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1406 Tresu_1407 Tresu_1407 Tresu_1407 1511388 1511714 - histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119~KEGG: sta:STHERM_c18570 DNA-binding protein HbbU~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein~SPTR: DNA-binding protein HbbU%3B~IMG reference gene:2504608349~PFAM: Bacterial DNA-binding protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1407 Tresu_1408 Tresu_1408 Tresu_1408 1511766 1512044 - 30S ribosomal protein S20 HAMAP: Ribosomal protein S20~InterPro IPR002583~KEGG: tde:TDE1710 30S ribosomal protein S20~PFAM: Ribosomal protein S20~SPTR: 30S ribosomal protein S20%3B~TIGRFAM: Ribosomal protein S20~IMG reference gene:2504608350~PFAM: Ribosomal protein S20~TIGRFAM: ribosomal protein S20 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1408 Tresu_1409 Tresu_1409 Tresu_1409 1512096 1512269 - hypothetical protein KEGG: tde:TDE2408 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608351 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1409 Tresu_1410 Tresu_1410 Tresu_1410 1512505 1513269 - phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: tde:TDE1989 acyltransferase family protein~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase~SPTR: Acyltransferase family protein%3B~IMG reference gene:2504608352~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1410 Tresu_1411 Tresu_1411 Tresu_1411 1513297 1515309 - Arabinogalactan endo-1%2C4-beta-galactosidase COGs: COG3867 Arabinogalactan endo-1 4-beta-galactosidase~InterPro IPR011683:IPR011081~KEGG: bha:BH2023 hypothetical protein~PFAM: Glycosyl hydrolase 53%3B Bacterial Ig-related~PRIAM: Arabinogalactan endo-1%2C4-beta-galactosidase~SPTR: Arabinogalactan endo-1%2C4-beta-galactosidase%3B~IMG reference gene:2504608353~PFAM: Glycosyl hydrolase family 53%3B Bacterial Ig-like domain (group 4) gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1411 Tresu_1412 Tresu_1412 Tresu_1412 1515465 1517027 - Sporulation domain-containing protein InterPro IPR007730~KEGG: ang:An01g09380 hypothetical protein~PFAM: Sporulation-related domain~SPTR: Acidic repeat protein%3B~IMG reference gene:2504608354~PFAM: Sporulation related domain gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1412 Tresu_1413 Tresu_1413 Tresu_1413 1517035 1517538 - hypothetical protein IMG reference gene:2504608355 gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1413 Tresu_1414 Tresu_1414 Tresu_1414 1517792 1519120 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: ere:EUBREC_1389 hypothetical protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative efflux protein%2C MATE family%3B~TIGRFAM: Multi antimicrobial extrusion protein~manually curated~IMG reference gene:2504608356~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1414 Tresu_1415 Tresu_1415 Tresu_1415 1519493 1519699 - pseudogene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1415 Tresu_1416 Tresu_1416 Tresu_1416 1519749 1520111 - pseudogene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1416 Tresu_1417 Tresu_1417 Tresu_1417 1520270 1520596 - hypothetical protein IMG reference gene:2504608359 gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1417 Tresu_1418 Tresu_1418 Tresu_1418 1520616 1520942 - hypothetical protein IMG reference gene:2504608360 gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1418 Tresu_1419 Tresu_1419 Tresu_1419 1521091 1521264 + pseudogene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1419 Tresu_1420 Tresu_1420 Tresu_1420 1521463 1522329 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: tde:TDE1891 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504608362~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1420 Tresu_1421 Tresu_1421 Tresu_1421 1522703 1523653 + Ornithine carbamoyltransferase COGs: COG0078 Ornithine carbamoyltransferase~HAMAP: Ornithine carbamoyltransferase~InterPro IPR006132:IPR006131:IPR002292~KEGG: fno:Fnod_0704 ornithine carbamoyltransferase~PFAM: Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain%3B Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding~PRIAM: Ornithine carbamoyltransferase~SPTR: Ornithine carbamoyltransferase%3B~TIGRFAM: Ornithine carbamoyltransferase~IMG reference gene:2504608364~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: ornithine carbamoyltransferase gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1421 Tresu_1422 Tresu_1422 Tresu_1422 1523682 1524125 + hypothetical protein KEGG: tde:TDE1480 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608365 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1422 Tresu_1423 Tresu_1423 Tresu_1423 1524215 1525198 + phosphoesterase RecJ domain protein COGs: COG0618 Exopolyphosphatase-related protein~InterPro IPR001667:IPR003156~KEGG: tde:TDE1479 DHH superfamily protein%2C subfamily 1~PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1~SPTR: DHH superfamily protein%2C subfamily 1%3B~IMG reference gene:2504608366~PFAM: DHH family%3B DHHA1 domain gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1423 Tresu_1424 Tresu_1424 Tresu_1424 1525473 1526387 + hypothetical protein KEGG: tde:TDE2272 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608367 gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1424 Tresu_1425 Tresu_1425 Tresu_1425 1526588 1527718 + transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504608368~PFAM: Transposase DDE domain gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1425 Tresu_1426 Tresu_1426 Tresu_1426 1527828 1528484 + Nucleoside-triphosphatase rdgB COGs: COG0127 Xanthosine triphosphate pyrophosphatase~HAMAP: Nucleoside-triphosphatase~InterPro IPR002637:IPR020922~KEGG: tde:TDE2271 HAM1 protein~PFAM: Ham1-like protein~PRIAM: Nucleoside-triphosphatase~SPTR: Nucleoside-triphosphatase%3B~IMG reference gene:2504608369~PFAM: Ham1 family~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1426 Tresu_1427 Tresu_1427 Tresu_1427 1528477 1531161 + membrane protein insertase%2C YidC/Oxa1 family COGs: COG0706 Preprotein translocase subunit YidC~InterPro IPR001708~KEGG: tde:TDE1436 inner membrane protein~PFAM: Membrane insertion protein%2C OxaA/YidC~SPTR: Inner membrane protein%3B~TIGRFAM: Membrane insertion protein%2C OxaA/YidC~IMG reference gene:2504608370~PFAM: 60Kd inner membrane protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1427 Tresu_1428 Tresu_1428 Tresu_1428 1531178 1532206 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: ipo:Ilyop_2681 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2504608371~PFAM: Glycosyl transferases group 1 gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1428 Tresu_1429 Tresu_1429 Tresu_1429 1532266 1533705 + Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis~InterPro IPR003362:IPR017472:IPR017475~KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase%2C WbaP~PFAM: Bacterial sugar transferase~PRIAM: Undecaprenyl-phosphate galactose phosphotransferase~SPTR: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B~TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~IMG reference gene:2504608372~PFAM: Bacterial sugar transferase~TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase%3B Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1429 Tresu_1430 Tresu_1430 Tresu_1430 1533709 1535325 + hypothetical protein KEGG: tde:TDE0688 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608373 gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1430 Tresu_1431 Tresu_1431 Tresu_1431 1535327 1536442 - hypothetical protein KEGG: tde:TDE1264 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608374 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1431 Tresu_1432 Tresu_1432 Tresu_1432 1536447 1537544 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis~HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~InterPro IPR004588~KEGG: tde:TDE1265 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%3B~TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~IMG reference gene:2504608375~PFAM: GcpE protein~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1432 Tresu_1433 Tresu_1433 Tresu_1433 1537767 1538189 - H+transporting two-sector ATPase C subunit InterPro IPR002379~KEGG: tde:TDE1679 V-type ATP synthase subunit K~PFAM: ATPase%2C F0/V0 complex%2C subunit C~SPTR: V-type ATP synthase subunit K%3B~IMG reference gene:2504608376~PFAM: ATP synthase subunit C gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1433 Tresu_1434 Tresu_1434 Tresu_1434 1538262 1540193 - V-type ATPase 116 kDa subunit COGs: COG1269 H+-ATPase subunit I~InterPro IPR002490~KEGG: tpp:TPASS_0429 V-type ATP synthase subunit I~PFAM: ATPase%2C V0/A0 complex%2C 116kDa subunit~SPTR: V-type ATP synthase subunit I 1%3B~IMG reference gene:2504608377~PFAM: V-type ATPase 116kDa subunit family gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1434 Tresu_1435 Tresu_1435 Tresu_1435 1540193 1541377 - V-type ATPase%2C D subunit COGs: COG1156 H+-ATPase subunit B~InterPro IPR004100:IPR000194:IPR002699~KEGG: tde:TDE1682 V-type ATP synthase subunit B~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C V1/A1 complex%2C subunit D~SPTR: V-type ATP synthase beta chain%3B~TIGRFAM: ATPase%2C V1/A1 complex%2C subunit D~IMG reference gene:2504608378~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase subunit D%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: H(+)-transporting ATP synthase%2C vacuolar type%2C subunit D gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1435 Tresu_1436 Tresu_1436 Tresu_1436 1541377 1543146 - V-type ATP synthase alpha chain COGs: COG1155 H+-ATPase subunit A~HAMAP: V-type ATP synthase catalytic subunit A/alpha~InterPro IPR004100:IPR000194:IPR022878~KEGG: tde:TDE1683 V-type ATP synthase subunit A~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~PRIAM: H(+)-transporting two-sector ATPase~SPTR: V-type ATP synthase alpha chain%3B~IMG reference gene:2504608379~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1436 Tresu_1437 Tresu_1437 Tresu_1437 1543143 1543691 - hypothetical protein KEGG: tde:TDE1380 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608380~PFAM: Protein of unknown function (DUF2764) gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1437 Tresu_1438 Tresu_1438 Tresu_1438 1543691 1544428 - V-type ATP synthase subunit E KEGG: tde:TDE1381 V-type ATP synthase subunit E~SPTR: V-type ATP synthase subunit E%3B~IMG reference gene:2504608381 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1438 Tresu_1439 Tresu_1439 Tresu_1439 1544465 1545505 - Aldose 1-epimerase COGs: COG2017 Galactose mutarotase~InterPro IPR008183~KEGG: pst:PSPTO_2636 aldose 1-epimerase~PFAM: Aldose 1-epimerase~PRIAM: Aldose 1-epimerase~SPTR: Aldose 1-epimerase%3B~IMG reference gene:2504608382~PFAM: Aldose 1-epimerase gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1439 Tresu_1440 Tresu_1440 Tresu_1440 1545602 1546180 - hypothetical protein KEGG: tde:TDE2680 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608383 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1440 Tresu_1441 Tresu_1441 Tresu_1441 1546187 1546525 - hypothetical protein KEGG: tde:TDE2681 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608384 gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1441 Tresu_1442 Tresu_1442 Tresu_1442 1546631 1547926 - hypothetical protein IMG reference gene:2504608385 gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1442 Tresu_1443 Tresu_1443 Tresu_1443 1547928 1548761 - hypothetical protein KEGG: ssm:Spirs_0717 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608386 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1443 Tresu_1444 Tresu_1444 Tresu_1444 1548766 1550052 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE1850 ABC transporter%2C permease protein%2C putative~PFAM: Domain of unknown function DUF214%2C ABC transporter permease~SPTR: ABC transporter%2C permease protein%2C putative%3B~IMG reference gene:2504608387~PFAM: Predicted permease gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1444 Tresu_1445 Tresu_1445 Tresu_1445 1550052 1551473 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: ssm:Spirs_0715 protein of unknown function DUF214~PFAM: Domain of unknown function DUF214%2C ABC transporter permease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608388~PFAM: Predicted permease gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1445 Tresu_1446 Tresu_1446 Tresu_1446 1551808 1553490 - 2-isopropylmalate synthase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR000891:IPR013709~KEGG: caa:Caka_1596 2-isopropylmalate synthase~PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~PRIAM: 2-isopropylmalate synthase~SMART: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~SPTR: 2-isopropylmalate synthase%3B~IMG reference gene:2504608389~PFAM: LeuA allosteric (dimerisation) domain%3B HMGL-like~TIGRFAM: 2-isopropylmalate synthase%2C yeast type gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1446 Tresu_1447 Tresu_1447 Tresu_1447 1553741 1555969 - hypothetical protein KEGG: cpi:Cpin_1999 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608390 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1447 Tresu_1448 Tresu_1448 Tresu_1448 1556053 1558818 + peptidase M16 domain protein COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765~KEGG: swd:Swoo_0261 peptidase M16 domain-containing protein~PFAM: Peptidase M16%2C N-terminal~SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2504608391~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1448 Tresu_1449 Tresu_1449 Tresu_1449 1558794 1559417 - 5-formyltetrahydrofolate cyclo-ligase COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase~InterPro IPR002698~KEGG: cpr:CPR_2319 5-formyltetrahydrofolate cyclo-ligase family protein~PFAM: 5-formyltetrahydrofolate cyclo-ligase~SPTR: 5-formyltetrahydrofolate cyclo-ligase family protein%3B~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~IMG reference gene:2504608392~PFAM: 5-formyltetrahydrofolate cyclo-ligase family~TIGRFAM: 5%2C10-methenyltetrahydrofolate synthetase gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1449 Tresu_1450 Tresu_1450 Tresu_1450 1559495 1560778 + metal-dependent phosphohydrolase HD sub domain protein COGs: COG0232 dGTP triphosphohydrolase~InterPro IPR006674:IPR003607~KEGG: clj:CLJU_c04120 putative deoxyguanosinetriphosphate triphosphohydrolase~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~SMART: Metal-dependent phosphohydrolase%2C HD domain~SPTR: Putative deoxyguanosinetriphosphate triphosphohydrolase%3B~IMG reference gene:2504608393~PFAM: HD domain~TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase%2C putative gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1450 Tresu_1451 Tresu_1451 Tresu_1451 1560793 1561233 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: tde:TDE1540 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608394~PFAM: Uncharacterised protein family (UPF0153) gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1451 Tresu_1452 Tresu_1452 Tresu_1452 1561441 1561941 + arabinogalactan endo-1%2C4-beta-galactosidase KEGG: pjd:Pjdr2_4730 arabinogalactan endo-1%2C4-beta-galactosidase~SPTR: Arabinogalactan endo-1%2C4-beta-galactosidase%3B~IMG reference gene:2504608395 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1452 Tresu_1453 Tresu_1453 Tresu_1453 1562014 1562898 + hypothetical protein KEGG: tva:TVAG_189160 chitinase~SPTR: Chitinase%2C putative%3B~IMG reference gene:2504608396 gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1453 Tresu_1454 Tresu_1454 Tresu_1454 1563002 1564237 + Arabinogalactan endo-1%2C4-beta-galactosidase COGs: COG3867 Arabinogalactan endo-1 4-beta-galactosidase~InterPro IPR011683~KEGG: tna:CTN_1370 arabinogalactan endo-1%2C4-beta-galactosidase precursor~PFAM: Glycosyl hydrolase 53~PRIAM: Arabinogalactan endo-1%2C4-beta-galactosidase~SPTR: Arabinogalactan endo-1%2C4-beta-galactosidase%3B~IMG reference gene:2504608397~PFAM: Glycosyl hydrolase family 53 gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1454 Tresu_1455 Tresu_1455 Tresu_1455 1564277 1565914 - peptidase C14 caspase catalytic subunit p20 COGs: COG4249 Uncharacterized protein containing caspase domain~InterPro IPR011600~KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20~PFAM: Peptidase C14%2C caspase catalytic~SPTR: Caspase domain protein%3B~IMG reference gene:2504608398~PFAM: Caspase domain gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1455 Tresu_1456 Tresu_1456 Tresu_1456 1565871 1566500 - pseudogene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1456 Tresu_1457 Tresu_1457 Tresu_1457 1566509 1568341 - peptidase C14 caspase catalytic subunit p20 COGs: COG4249 Uncharacterized protein containing caspase domain~InterPro IPR011600:IPR006597~KEGG: app:CAP2UW1_0518 peptidase C14 caspase catalytic subunit P20~PFAM: Peptidase C14%2C caspase catalytic%3B Sel1-like~SMART: Sel1-like~SPTR: Peptidase C14 caspase catalytic subunit p20%3B~IMG reference gene:2504608400~PFAM: Caspase domain%3B Sel1 repeat gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1457 Tresu_1458 Tresu_1458 Tresu_1458 1568363 1569274 - hypothetical protein IMG reference gene:2504608401 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1458 Tresu_1459 Tresu_1459 Tresu_1459 1569222 1569398 - hypothetical protein IMG reference gene:2504608402 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1459 Tresu_1460 Tresu_1460 Tresu_1460 1569423 1570385 - hypothetical protein IMG reference gene:2504608403 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1460 Tresu_1461 Tresu_1461 Tresu_1461 1570508 1571878 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608404 gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1461 Tresu_1462 Tresu_1462 Tresu_1462 1571897 1572547 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608405 gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1462 Tresu_1463 Tresu_1463 Tresu_1463 1572663 1572980 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE2445 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504608406~PFAM: Helix-turn-helix gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1463 Tresu_1464 Tresu_1464 Tresu_1464 1573710 1574468 + hypothetical protein IMG reference gene:2504608407 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1464 Tresu_1465 Tresu_1465 Tresu_1465 1574545 1576515 - transketolase COGs: COG0021 Transketolase~InterPro IPR005474:IPR005475:IPR005476:IPR005478~KEGG: tde:TDE1308 transketolase~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: Transketolase~SMART: Transketolase-like%2C pyrimidine-binding domain~SPTR: Transketolase%3B~TIGRFAM: Transketolase%2C bacterial-like~IMG reference gene:2504608408~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: transketolase%2C bacterial and yeast gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1465 Tresu_1466 Tresu_1466 Tresu_1466 1576617 1577093 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: ppd:Ppro_0069 putative PTS IIA-like nitrogen-regulatory protein PtsN~PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN%3B~IMG reference gene:2504608409~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1466 Tresu_1467 Tresu_1467 Tresu_1467 1577120 1578640 - hypothetical protein KEGG: tde:TDE1307 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608410 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1467 Tresu_1468 Tresu_1468 Tresu_1468 1578743 1579267 + nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: dap:Dacet_1946 nitroreductase~PFAM: Nitroreductase-like~SPTR: Nitroreductase%3B~IMG reference gene:2504608411~PFAM: Nitroreductase family gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1468 Tresu_1469 Tresu_1469 Tresu_1469 1579360 1581096 - acetolactate synthase%2C large subunit%2C biosynthetic type COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR012001:IPR012000:IPR011766:IPR012846~KEGG: dar:Daro_1620 acetolactate synthase catalytic subunit~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain%3B Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Acetolactate synthase~SPTR: Acetolactate synthase%3B~TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~IMG reference gene:2504608412~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1469 Tresu_1470 Tresu_1470 Tresu_1470 1581452 1582117 + hypothetical protein KEGG: tde:TDE1093 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608413 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1470 Tresu_1471 Tresu_1471 Tresu_1471 1582129 1583718 + Domain of unknown function DUF1957 COGs: COG1543 conserved hypothetical protein~InterPro IPR004300:IPR015293~KEGG: ssm:Spirs_1542 domain of unknown function DUF1957~PFAM: Domain of unknown function DUF1957%3B Glycoside hydrolase%2C family 57%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608414~PFAM: Domain of unknown function (DUF1957)%3B Glycosyl hydrolase family 57 gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1471 Tresu_1472 Tresu_1472 Tresu_1472 1583808 1586525 + 60 kDa inner membrane insertion protein COGs: COG0706 Preprotein translocase subunit YidC~InterPro IPR001708~KEGG: tde:TDE1436 inner membrane protein~PFAM: Membrane insertion protein%2C OxaA/YidC~SPTR: Inner membrane protein%3B~IMG reference gene:2504608415~PFAM: 60Kd inner membrane protein%3B Sulfatase~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1472 Tresu_1473 Tresu_1473 Tresu_1473 1586522 1587760 + CDP-glycerol:poly(glycerophosphate)glycerophosph otransferase InterPro IPR007554~KEGG: tde:TDE1435 hypothetical protein~PFAM: CDP-glycerol glycerophosphotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608416~PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1473 Tresu_1474 Tresu_1474 Tresu_1474 1587794 1589764 + Histidinol-phosphate transaminase COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~InterPro IPR004839~KEGG: ahe:Arch_0083 transcriptional regulator%2C MarR family~PFAM: Aminotransferase%2C class I/classII~PRIAM: Histidinol-phosphate transaminase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608417~PFAM: Nucleotidyl transferase%3B Aminotransferase class I and II~TIGRFAM: histidinol-phosphate aminotransferase gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1474 Tresu_1475 Tresu_1475 Tresu_1475 1589823 1591178 - Spore coat protein CotH InterPro IPR014867~KEGG: bfr:BF1549 hypothetical protein~PFAM: Spore coat protein CotH~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608418~PFAM: CotH protein gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1475 Tresu_1476 Tresu_1476 Tresu_1476 1591227 1591901 - hypothetical protein KEGG: bpb:bpr_I0451 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608419 gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1476 Tresu_1477 Tresu_1477 Tresu_1477 1591951 1592664 - VTC domain-containing protein InterPro IPR018966~KEGG: bpb:bpr_I0450 hypothetical protein~PFAM: VTC domain~SPTR: VTC domain%3B~IMG reference gene:2504608420~PFAM: VTC domain gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1477 Tresu_1478 Tresu_1478 Tresu_1478 1592810 1594045 + Spore coat protein CotH InterPro IPR014867~KEGG: bfr:BF1549 hypothetical protein~PFAM: Spore coat protein CotH~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608421~PFAM: CotH protein gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1478 Tresu_1479 Tresu_1479 Tresu_1479 1594142 1594843 + hypothetical protein COGs: COG0822 NifU homolog involved in Fe-S cluster formation~KEGG: ere:EUBREC_2146 hypothetical protein~SPTR: NifU homolog involved in Fe-S cluster formation%3B~IMG reference gene:2504608422~PFAM: NifU-like N terminal domain gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1479 Tresu_1480 Tresu_1480 Tresu_1480 1594855 1595901 + hypothetical protein KEGG: pru:PRU_0687 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608423 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1480 Tresu_1481 Tresu_1481 Tresu_1481 1596214 1596704 - pseudogene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1481 Tresu_1482 Tresu_1482 Tresu_1482 1597079 1599664 - ATP-dependent chaperone ClpB COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 003593:IPR017730~KEGG: bpo:BP951000_2092 ATP-dependent Clp protease ATP-binding subunit ClpB~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent Clp protease%2C ATP-binding subunit ClpB%3B~TIGRFAM: Chaperonin ClpB~IMG reference gene:2504608425~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B Clp amino terminal domain%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent chaperone ClpB gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1482 Tresu_1483 Tresu_1483 Tresu_1483 1599726 1600907 - hypothetical protein KEGG: bpb:bpr_I1006 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608426 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1483 Tresu_1484 Tresu_1484 Tresu_1484 1601025 1601246 - hypothetical protein IMG reference gene:2504608427 gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1484 Tresu_1485 Tresu_1485 Tresu_1485 1601288 1604272 - peptidase M16 domain protein COGs: COG1026 Zn-dependent peptidase insulinase-like~InterPro IPR007863:IPR013578~KEGG: tde:TDE1865 M16 family peptidase~PFAM: Peptidase M16%2C C-terminal%3B Peptidase M16C associated~SPTR: Peptidase%2C M16 family%3B~IMG reference gene:2504608428~PFAM: Peptidase M16C associated%3B Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1485 Tresu_1486 Tresu_1486 Tresu_1486 1604269 1605543 - Flagellar motor switch protein FliG%2C C-terminal COGs: COG1536 Flagellar motor switch protein~InterPro IPR023087~KEGG: tde:TDE1285 flagellar motor switch protein FliG%2C putative~PFAM: Flagellar motor switch protein FliG%2C C-terminal~SPTR: Flagellar motor switch protein%3B~IMG reference gene:2504608429~PFAM: FliG C-terminal domain~TIGRFAM: flagellar motor switch protein FliG gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1486 Tresu_1487 Tresu_1487 Tresu_1487 1605696 1607183 + protease Do COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001254:IPR001478:IPR011782~KEGG: tpp:TPASS_0841 periplasmic serine protease DO~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~PRIAM: HtrA2 peptidase~SMART: PDZ/DHR/GLGF~SPTR: Periplasmic serine protease DO%3B~TIGRFAM: Peptidase S1C%2C Do~IMG reference gene:2504608430~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: periplasmic serine protease%2C Do/DeqQ family gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1487 Tresu_1488 Tresu_1488 Tresu_1488 1607473 1608045 + UPF0059 membrane protein yebN COGs: COG1971 membrane protein~HAMAP: Uncharacterised protein family UPF0059~InterPro IPR003810:IPR022929~KEGG: ccb:Clocel_1492 hypothetical protein~PFAM: Domain of unknown function DUF204~SPTR: UPF0059 membrane protein COPEUT_01650%3B~manually curated~IMG reference gene:2504608431~PFAM: Domain of unknown function DUF gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1488 Tresu_1489 Tresu_1489 Tresu_1489 1608058 1609026 - pseudogene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1489 Tresu_1490 Tresu_1490 Tresu_1490 1609043 1610080 - Aspartate--ammonia ligase COGs: COG2502 Asparagine synthetase A~HAMAP: Aspartate--ammonia ligase~InterPro IPR004618~KEGG: pru:PRU_1711 aspartate--ammonia ligase~PFAM: Aspartate--ammonia ligase~PRIAM: Aspartate--ammonia ligase~SPTR: Aspartate--ammonia ligase%3B~TIGRFAM: Aspartate--ammonia ligase~IMG reference gene:2504608433~PFAM: Aspartate-ammonia ligase~TIGRFAM: aspartate--ammonia ligase%2C AsnA-type gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1490 Tresu_1491 Tresu_1491 Tresu_1491 1610121 1611629 - galactose-1-phosphate uridylyltransferase COGs: COG4468 Galactose-1-phosphate uridyltransferase~InterPro IPR005849:IPR005850:IPR000766~KEGG: bpb:bpr_I2842 galactose-1-phosphate uridylyltransferase GalT~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal%3B Galactose-1-phosphate uridyl transferase%2C N-terminal~PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Galactose-1-phosphate uridyl transferase%2C class II~IMG reference gene:2504608434~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal domain%3B Galactose-1-phosphate uridyl transferase%2C N-terminal domain~TIGRFAM: galactose-1-phosphate uridylyltransferase%2C family 2 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1491 Tresu_1492 Tresu_1492 Tresu_1492 1611753 1612595 + DNA/RNA non-specific endonuclease COGs: COG1864 DNA/RNA endonuclease G NUC1~InterPro IPR001604:IPR020821~KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease~PFAM: DNA/RNA non-specific endonuclease~SMART: DNA/RNA non-specific endonuclease%3B Extracellular Endonuclease%2C subunit A~SPTR: DNA/RNA non-specific endonuclease%3B~IMG reference gene:2504608435~PFAM: DNA/RNA non-specific endonuclease gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1492 Tresu_1493 Tresu_1493 Tresu_1493 1613034 1614212 + Capsule synthesis protein%2C CapA COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation)~InterPro IPR019079~KEGG: emi:Emin_0760 hypothetical protein~PFAM: Capsule synthesis protein%2C CapA~SMART: Capsule synthesis protein%2C CapA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608436~PFAM: Bacterial capsule synthesis protein PGA_cap gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1493 Tresu_1494 Tresu_1494 Tresu_1494 1614203 1616785 + helicase domain protein COGs: COG1643 HrpA-like helicase~InterPro IPR001650:IPR007502:IPR011709:IPR014001~KEGG: tde:TDE1654 ATP-dependent helicase HrpA%2C putative~PFAM: Helicase%2C C-terminal%3B Helicase-associated domain%3B Domain of unknown function DUF1605~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal%3B Helicase-associated domain~SPTR: ATP-dependent helicase HrpA%2C putative%3B~IMG reference gene:2504608437~PFAM: Helicase conserved C-terminal domain%3B Helicase associated domain (HA2)%3B Domain of unknown function (DUF1605)%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent helicase HrpA gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1494 Tresu_1495 Tresu_1495 Tresu_1495 1616961 1617875 + hypothetical protein KEGG: tde:TDE1891 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608438~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1495 Tresu_1496 Tresu_1496 Tresu_1496 1617878 1619740 - TonB-dependent receptor COGs: COG4206 Outer membrane cobalamin receptor protein~InterPro IPR000531~KEGG: cat:CA2559_12508 putative TonB-dependent outer membrane receptor~PFAM: TonB-dependent receptor%2C beta-barrel~SPTR: TonB-dependent receptor%2C putative%3B~IMG reference gene:2504608439 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1496 Tresu_1497 Tresu_1497 Tresu_1497 1619812 1620306 - hypothetical protein KEGG: bhy:BHWA1_00394 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608440 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1497 Tresu_1498 Tresu_1498 Tresu_1498 1620399 1621073 - hypothetical protein IMG reference gene:2504608441 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1498 Tresu_1499 Tresu_1499 Tresu_1499 1621048 1621932 - hypothetical protein IMG reference gene:2504608442 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1499 Tresu_1500 Tresu_1500 Tresu_1500 1622255 1623559 - hypothetical protein IMG reference gene:2504608443 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1500 Tresu_1501 Tresu_1501 Tresu_1501 1623749 1624402 + hypothetical protein KEGG: sta:STHERM_c00910 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608444 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1501 Tresu_1502 Tresu_1502 Tresu_1502 1624399 1625886 - hypothetical protein KEGG: tde:TDE0840 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608445 gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1502 Tresu_1503 Tresu_1503 Tresu_1503 1626002 1626634 - Adenylate kinase COGs: COG0563 Adenylate kinase and related kinase~HAMAP: Adenylate kinase~InterPro IPR000850:IPR007862:IPR006259~KEGG: tde:TDE1112 adenylate kinase~PFAM: Adenylate kinase%3B Adenylate kinase%2C active site lid domain~SPTR: Adenylate kinase%3B~TIGRFAM: Adenylate kinase%2C subfamily~IMG reference gene:2504608446~PFAM: Adenylate kinase%2C active site lid%3B Adenylate kinase~TIGRFAM: adenylate kinases gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1503 Tresu_1504 Tresu_1504 Tresu_1504 1626712 1627944 - Tyrosyl-tRNA synthetase COGs: COG0162 Tyrosyl-tRNA synthetase~HAMAP: Tyrosyl-tRNA synthetase%2C class Ib~InterPro IPR002305:IPR002942:IPR002307~KEGG: bpu:BPUM_2615 tyrosyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib%3B RNA-binding S4~PRIAM: Tyrosine--tRNA ligase~SMART: RNA-binding S4~SPTR: Tyrosyl-tRNA synthetase%3B~TIGRFAM: Tyrosyl-tRNA synthetase%2C class Ib~IMG reference gene:2504608447~PFAM: S4 domain%3B tRNA synthetases class I (W and Y)~TIGRFAM: tyrosyl-tRNA synthetase gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1504 Tresu_1505 Tresu_1505 Tresu_1505 1628388 1628621 + CopG-like DNA-binding protein KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein~SPTR: CopG-like DNA-binding protein%3B~IMG reference gene:2504608450 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1505 Tresu_1506 Tresu_1506 Tresu_1506 1628652 1629125 - SUF system FeS assembly protein%2C NifU family COGs: COG0822 NifU homolog involved in Fe-S cluster formation~InterPro IPR002871:IPR011341~KEGG: bpb:bpr_I0055 FeS assembly protein SufE~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal~SPTR: FeS assembly protein SufE%3B~TIGRFAM: SUF system FeS cluster assembly%2C SufU scaffold~IMG reference gene:2504608451~PFAM: NifU-like N terminal domain~TIGRFAM: SUF system FeS assembly protein%2C NifU family gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1506 Tresu_1507 Tresu_1507 Tresu_1507 1629152 1630396 - cysteine desulfurase%2C SufS subfamily COGs: COG0520 Selenocysteine lyase~InterPro IPR000192:IPR010970~KEGG: bpb:bpr_I0054 cysteine desulfurase SufS~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Cysteine desulfurase~SPTR: Cysteine desulfurase SufS%3B~TIGRFAM: Cysteine desulfurase%2C SufS~IMG reference gene:2504608452~PFAM: Aminotransferase class-V~TIGRFAM: cysteine desulfurases%2C SufS subfamily gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1507 Tresu_1508 Tresu_1508 Tresu_1508 1630407 1631459 - SufBD protein COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component~InterPro IPR000825~KEGG: bpb:bpr_I0053 FeS assembly protein SufD~PFAM: SUF system FeS cluster assembly%2C SufBD~SPTR: ABC-type transport system involved in Fe-S cluster assembly%2C permease component%3B~IMG reference gene:2504608453~PFAM: Uncharacterized protein family (UPF0051) gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1508 Tresu_1509 Tresu_1509 Tresu_1509 1631470 1632885 - FeS assembly protein SufB COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component~InterPro IPR000825:IPR010231~KEGG: bpb:bpr_I0052 FeS assembly protein SufB~PFAM: SUF system FeS cluster assembly%2C SufBD~SPTR: Putative uncharacterized protein%3B~TIGRFAM: SUF system FeS cluster assembly%2C SufB~IMG reference gene:2504608454~PFAM: Uncharacterized protein family (UPF0051)~TIGRFAM: FeS assembly protein SufB gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1509 Tresu_1510 Tresu_1510 Tresu_1510 1632900 1633739 - FeS assembly ATPase SufC COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component~InterPro IPR003439:IPR003593:IPR010230~KEGG: bpb:bpr_I0051 FeS assembly ATPase SufC~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC superfamily ATP binding cassette transporter%2C ABC protein%3B~TIGRFAM: ATPase SufC%2C SUF system FeS cluster assembly~IMG reference gene:2504608455~PFAM: ABC transporter~TIGRFAM: FeS assembly ATPase SufC gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1510 Tresu_1511 Tresu_1511 Tresu_1511 1634425 1635591 + Sulphatase-modifying factor protein InterPro IPR005532~KEGG: tde:TDE2101 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608456~PFAM: Formylglycine-generating sulfatase enzyme gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1511 Tresu_1512 Tresu_1512 Tresu_1512 1635746 1636135 - hypothetical protein SPTR: Rhs-related protein%3B~IMG reference gene:2504608457~PFAM: Protein of unknown function (DUF2778) gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1512 Tresu_1513 Tresu_1513 Tresu_1513 1636824 1638404 - hypothetical protein IMG reference gene:2504608459 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1513 Tresu_1514 Tresu_1514 Tresu_1514 1638763 1640070 - hypothetical protein IMG reference gene:2504608460 gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1514 Tresu_1515 Tresu_1515 Tresu_1515 1640102 1640344 - hypothetical protein IMG reference gene:2504608461 gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1515 Tresu_1516 Tresu_1516 Tresu_1516 1640465 1641187 - Sulfate-transporting ATPase COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: cno:NT01CX_0934 ABC transporter~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608462~PFAM: ABC transporter gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1516 Tresu_1517 Tresu_1517 Tresu_1517 1641174 1641842 - polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR000515:IPR010065~KEGG: cpy:Cphy_0848 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~IMG reference gene:2504608463~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1517 Tresu_1518 Tresu_1518 Tresu_1518 1641858 1642631 - ABC-type transporter%2C periplasmic subunit family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638~KEGG: ere:EUBREC_1489 amino acid ABC transporter%2C permease protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608464~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1518 Tresu_1519 Tresu_1519 Tresu_1519 1642742 1644124 - tRNA-i(6)A37 thiotransferase enzyme MiaB COGs: COG0621 2-methylthioadenine synthetase~InterProIPR013848:IPR007197:IPR002792:IPR006638:IPR 005839:IPR006463~KEGG: tpp:TPASS_0754 (dimethylallyl)adenosine tRNA methylthiotransferase~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM%3B Deoxyribonuclease/rho motif-related TRAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: tRNA-I(6)A37 thiotransferase enzyme MiaB%3B~TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB%3B Methylthiotransferase~IMG reference gene:2504608465~PFAM: TRAM domain%3B Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1519 Tresu_1520 Tresu_1520 Tresu_1520 1644556 1644915 + glycoside hydrolase family 13 domain protein InterPro IPR004193~KEGG: sta:STHERM_c15960 hypothetical protein~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608466~PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain) gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1520 Tresu_1521 Tresu_1521 Tresu_1521 1645069 1645854 - protein of unknown function DUF198 COGs: COG1469 conserved hypothetical protein~InterPro IPR003801~KEGG: sta:STHERM_c09930 hypothetical protein~PFAM: GTP cyclohydrolase FolE2/MptA~PRIAM: GTP cyclohydrolase I~SPTR: GTP cyclohydrolase folE2%3B~TIGRFAM: GTP cyclohydrolase FolE2/MptA~IMG reference gene:2504608467~PFAM: Uncharacterized ACR%2C COG1469~TIGRFAM: TIGR00294 family protein gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1521 Tresu_1522 Tresu_1522 Tresu_1522 1645847 1646731 - Bifunctional protein folD COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase~HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase~InterPro IPR020630:IPR020631:IPR000672~KEGG: tde:TDE0013 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain~PRIAM: Methenyltetrahydrofolate cyclohydrolase~SPTR: Bifunctional protein folD%3B~IMG reference gene:2504608468~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1522 Tresu_1523 Tresu_1523 Tresu_1523 1646936 1647619 + hypothetical protein KEGG: ssm:Spirs_2430 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608469 gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1523 Tresu_1524 Tresu_1524 Tresu_1524 1647640 1648836 + hypothetical protein IMG reference gene:2504608470 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1524 Tresu_1525 Tresu_1525 Tresu_1525 1648846 1651263 + AAA ATPase central domain protein COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase~InterPro IPR003959:IPR003593~KEGG: ssm:Spirs_1297 AAA ATPase central domain protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: Recombination factor protein RarA%3B~IMG reference gene:2504608471~PFAM: MgsA AAA+ ATPase C terminal%3B Holliday junction DNA helicase ruvB N-terminus gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1525 Tresu_1526 Tresu_1526 Tresu_1526 1651260 1651994 + Methyltransferase type 11 COGs: COG4123 O-methyltransferase~InterPro IPR013216~KEGG: cpy:Cphy_3911 methyltransferase type 11~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608472~PFAM: Methyltransferase small domain gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1526 Tresu_1527 Tresu_1527 Tresu_1527 1652003 1652932 + Conserved hypothetical protein CHP01212 COGs: COG1242 Fe-S oxidoreductase~InterPro IPR007197:IPR006638:IPR005911~KEGG: csh:Closa_3205 hypothetical protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM protein%2C TIGR01212 family%3B~TIGRFAM: Conserved hypothetical protein CHP01212~IMG reference gene:2504608473~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM protein%2C TIGR01212 family gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1527 Tresu_1528 Tresu_1528 Tresu_1528 1652981 1654048 + glyceraldehyde-3-phosphate dehydrogenase%2C type I COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase~InterPro IPR020828:IPR020829:IPR006424~KEGG: csh:Closa_0829 glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain~PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~SMART: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type I~IMG reference gene:2504608474~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C C-terminal domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD binding domain~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1528 Tresu_1529 Tresu_1529 Tresu_1529 1654421 1655443 - UDP-glucuronate 4-epimerase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: cth:Cthe_1361 NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: UDP-glucuronate 4-epimerase~SPTR: NAD-dependent epimerase/dehydratase%3B~IMG reference gene:2504608475~PFAM: NAD dependent epimerase/dehydratase family gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1529 Tresu_1530 Tresu_1530 Tresu_1530 1655621 1656619 + glycosyl transferase family 8 InterPro IPR002495~KEGG: fsu:Fisuc_0710 hypothetical protein~PFAM: Glycosyl transferase%2C family 8~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608476~PFAM: Glycosyl transferase family 8 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1530 Tresu_1531 Tresu_1531 Tresu_1531 1656640 1658607 - protein of unknown function DUF342 COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain~InterPro IPR005646~KEGG: tde:TDE2682 hypothetical protein~PFAM: Protein of unknown function DUF342~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608477~PFAM: Protein of unknown function (DUF342) gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1531 Tresu_1532 Tresu_1532 Tresu_1532 1658616 1659404 - RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit~InterProIPR007627:IPR007624:IPR007630:IPR014284:IPR 012845~KEGG: ssm:Spirs_1586 RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG subfamily~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 3~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG%3B RNA polymerase sigma-70~IMG reference gene:2504608478~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG family%3B RNA polymerase sigma factor%2C sigma-70 family gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1532 Tresu_1533 Tresu_1533 Tresu_1533 1659474 1660214 - hypothetical protein IMG reference gene:2504608479 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1533 Tresu_1534 Tresu_1534 Tresu_1534 1660277 1661152 - Cobyrinic acid ac-diamide synthase COGs: COG0455 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: tpp:TPASS_0712 ATP-binding protein~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: ATP-binding protein (YlxH-1)%3B~IMG reference gene:2504608480~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1534 Tresu_1535 Tresu_1535 Tresu_1535 1661188 1662531 - GTP-binding signal recognition particle SRP54 G- domain protein COGs: COG1419 Flagellar GTP-binding protein~InterPro IPR000897:IPR003593~KEGG: ssm:Spirs_1583 flagellar biosynthetic protein FlhF~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase~SMART: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B ATPase%2C AAA+ type%2C core~SPTR: SRP54-type protein%2C GTPase domain%3B~IMG reference gene:2504608481~PFAM: SRP54-type protein%2C GTPase domain gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1535 Tresu_1536 Tresu_1536 Tresu_1536 1662524 1664650 - type III secretion FHIPEP protein COGs: COG1298 Flagellar biosynthesis pathway component FlhA~InterPro IPR001712~KEGG: ssm:Spirs_1582 flagellar biosynthesis protein FlhA~PFAM: Type III secretion system FHIPEP~SPTR: Flagellar biosynthesis protein FlhA%3B~IMG reference gene:2504608482~PFAM: FHIPEP family~TIGRFAM: flagellar biosynthesis protein FlhA gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1536 Tresu_1537 Tresu_1537 Tresu_1537 1664748 1665845 - flagellar biosynthetic protein FlhB COGs: COG1377 Flagellar biosynthesis pathway component FlhB~InterPro IPR006135:IPR006136~KEGG: tde:TDE0054 flagellar biosynthesis protein FlhB~PFAM: Type III secretion exporter~SPTR: Flagellar biosynthetic protein FlhB%3B~TIGRFAM: Flagellar biosynthetic protein FlhB~IMG reference gene:2504608483~PFAM: FlhB HrpN YscU SpaS Family~TIGRFAM: flagellar biosynthetic protein FlhB gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1537 Tresu_1538 Tresu_1538 Tresu_1538 1665845 1666666 - flagellar biosynthetic protein FliR COGs: COG1684 Flagellar biosynthesis pathway component FliR~InterPro IPR002010:IPR006303~KEGG: tde:TDE0053 flagellar biosynthetic protein FliR~PFAM: Type III secretion system inner membrane R protein~SPTR: Flagellar biosynthetic protein fliR%3B~TIGRFAM: Flagellar biosynthesis protein FliR~IMG reference gene:2504608484~PFAM: Bacterial export proteins%2C family 1~TIGRFAM: flagellar biosynthetic protein FliR gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1538 Tresu_1539 Tresu_1539 Tresu_1539 1666668 1666937 - flagellar biosynthetic protein FliQ COGs: COG1987 Flagellar biosynthesis pathway component FliQ~InterPro IPR002191:IPR006305~KEGG: tpp:TPASS_0717 flagellar biosynthetic protein~PFAM: Bacterial export protein FliQ%2C family 3~SPTR: Flagellar biosynthetic protein FliQ%3B~TIGRFAM: Flagellar biosynthesis protein FliQ~IMG reference gene:2504608485~PFAM: Bacterial export proteins%2C family 3~TIGRFAM: flagellar biosynthetic protein FliQ gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1539 Tresu_1540 Tresu_1540 Tresu_1540 1666975 1667820 - flagellar biosynthetic protein FliP COGs: COG1338 Flagellar biosynthesis pathway component FliP~InterPro IPR005838:IPR005837~KEGG: tpp:TPASS_0718 flagellar biosynthesis protein FliP~PFAM: Type III secretion system inner membrane P protein~SPTR: Flagellar biosynthetic protein FliP%3B~TIGRFAM: Flagellar transport protein FliP~IMG reference gene:2504608486~PFAM: FliP family~TIGRFAM: flagellar biosynthetic protein FliP gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1540 Tresu_1541 Tresu_1541 Tresu_1541 1667817 1668482 - hypothetical protein KEGG: tde:TDE2761 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608487~PFAM: Flagellar biosynthesis protein%2C FliO gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1541 Tresu_1542 Tresu_1542 Tresu_1542 1668604 1669830 - flagellar motor switch protein FliN COGs: COG1886 Flagellar motor switch/type III secretory pathway protein~InterPro IPR001543:IPR012826~KEGG: tde:TDE2762 flagellar motor switch protein FliY~PFAM: Surface presentation of antigen (SpoA)~SPTR: Flagellar motor switch protein FliY%3B~TIGRFAM: Flagellar motor switch FliN~IMG reference gene:2504608488~PFAM: Surface presentation of antigens (SPOA)~TIGRFAM: flagellar motor switch protein FliN gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1542 Tresu_1543 Tresu_1543 Tresu_1543 1669827 1670861 - flagellar motor switch protein FliM COGs: COG1868 Flagellar motor switch protein~InterPro IPR001689:IPR001543~KEGG: tpp:TPASS_0721 flagellar motor switch protein FliM~PFAM: Flagellar motor switch protein FliM%3B Surface presentation of antigen (SpoA)~SPTR: Flagellar motor switch protein FliM%3B~TIGRFAM: Flagellar motor switch protein FliM~IMG reference gene:2504608489~PFAM: Surface presentation of antigens (SPOA)%3B Flagellar motor switch protein FliM~TIGRFAM: flagellar motor switch protein FliM gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1543 Tresu_1544 Tresu_1544 Tresu_1544 1670885 1671439 - flagellar basal body-associated protein FliL COGs: COG1580 Flagellar basal body-associated protein~InterPro IPR005503~KEGG: tpp:TPASS_0722 flagellar basal body-associated protein FliL~PFAM: Flagellar basal body-associated protein FliL~SPTR: Flagellar basal body-associated protein FliL%3B~IMG reference gene:2504608490~PFAM: Flagellar basal body-associated protein FliL gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1544 Tresu_1545 Tresu_1545 Tresu_1545 1671530 1672252 - OmpA/MotB domain protein COGs: COG1360 Flagellar motor protein~InterPro IPR006665~KEGG: tde:TDE2765 flagellar motor protein MotB~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: Flagellar motor protein MotB%3B~IMG reference gene:2504608491~PFAM: OmpA family gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1545 Tresu_1546 Tresu_1546 Tresu_1546 1672270 1673052 - MotA/TolQ/ExbB proton channel COGs: COG1291 Flagellar motor component~InterPro IPR002898~KEGG: tde:TDE2766 motility protein A~PFAM: MotA/TolQ/ExbB proton channel~SPTR: Motility protein A%3B~IMG reference gene:2504608492~PFAM: MotA/TolQ/ExbB proton channel family gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1546 Tresu_1547 Tresu_1547 Tresu_1547 1673077 1673268 - flagellar FlbD family protein COGs: COG1582 Uncharacterized protein possibly involved in motility~InterPro IPR009384~KEGG: tde:TDE2767 flagellar protein-related protein~PFAM: Flagellar~SPTR: Flagellar protein-related protein%3B~IMG reference gene:2504608493~PFAM: Flagellar protein (FlbD) gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1547 Tresu_1548 Tresu_1548 Tresu_1548 1673388 1674044 - metal dependent phosphohydrolase COGs: COG3294 conserved hypothetical protein~InterPro IPR006674~KEGG: ere:EUBREC_3212 hypothetical protein~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~SPTR: HDIG domain protein%3B~IMG reference gene:2504608494~PFAM: HD domain gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1548 Tresu_1549 Tresu_1549 Tresu_1549 1674180 1674881 + two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: ssm:Spirs_3809 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504608495~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1549 Tresu_1550 Tresu_1550 Tresu_1550 1674878 1676254 + histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003660:IPR003661:IPR003594~KEGG: ssm:Spirs_3808 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504608496~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1550 Tresu_1551 Tresu_1551 Tresu_1551 1676235 1677167 - tRNA dimethylallyltransferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase~InterPro IPR002627:IPR018022~KEGG: tde:TDE0057 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: tRNA dimethylallyltransferase%3B~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~IMG reference gene:2504608497~PFAM: IPP transferase~TIGRFAM: tRNA dimethylallyltransferase gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1551 Tresu_1552 Tresu_1552 Tresu_1552 1677193 1677414 - DNA-directed RNA polymerase%2C omega subunit%2C putative KEGG: tde:TDE0056 DNA-directed RNA polymerase%2C omega subunit%2C putative~SPTR: DNA-directed RNA polymerase%2C omega subunit%2C putative%3B~IMG reference gene:2504608498~PFAM: RNA polymerase Rpb6 gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1552 Tresu_1553 Tresu_1553 Tresu_1553 1677636 1679027 - flagellar hook-basal body protein COGs: COG1749 Flagellar hook protein FlgE~InterPro IPR001444:IPR011491:IPR010930:IPR020013~KEGG: tde:TDE2768 flagellar hook protein FlgE~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body FlaE%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar hook protein FlgE%3B~TIGRFAM: Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504608499~PFAM: Flagella basal body rod protein%3B Domain of unknown function (DUF1078)%3B Flagellar basal body protein FlaE~TIGRFAM: fagellar hook-basal body proteins gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1553 Tresu_1554 Tresu_1554 Tresu_1554 1679073 1679522 - flagellar hook capping protein COGs: COG1843 Flagellar hook capping protein~InterPro IPR005648~KEGG: tde:TDE2769 flagellar basal body rod modification protein~PFAM: Flagellar hook capping protein~SPTR: FlgD%3B~IMG reference gene:2504608500~PFAM: Flagellar hook capping protein gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1554 Tresu_1555 Tresu_1555 Tresu_1555 1679544 1680926 - Flagellar hook-length control protein InterPro IPR021136~KEGG: tde:TDE2770 flagellar hook-length control protein FliK~PFAM: Flagellar hook-length control protein-like%2C C-terminal domain~SPTR: Hook length control protein FliK%3B~IMG reference gene:2504608501~PFAM: Flagellar hook-length control protein FliK gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1555 Tresu_1556 Tresu_1556 Tresu_1556 1680981 1681613 - hypothetical protein KEGG: tde:TDE1334 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608502 gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1556 Tresu_1557 Tresu_1557 Tresu_1557 1681717 1683006 - Hexokinase COGs: COG5026 Hexokinase~InterPro IPR022672:IPR022673~KEGG: tpp:TPASS_0505 hexokinase~PFAM: Hexokinase%2C C-terminal%3B Hexokinase%2C N-terminal~PRIAM: Hexokinase~SPTR: Hexokinase%3B~IMG reference gene:2504608503~PFAM: Hexokinase gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1557 Tresu_1558 Tresu_1558 Tresu_1558 1683395 1685215 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: ssm:Spirs_4033 methyl-accepting chemotaxis sensory transducer with cache sensor~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis sensory transducer with Cache sensor%3B~IMG reference gene:2504608504~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1558 Tresu_1559 Tresu_1559 Tresu_1559 1685245 1687272 + UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR000212~KEGG: tde:TDE0903 ATP-dependent DNA helicase PcrA~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase PcrA%3B~IMG reference gene:2504608505~PFAM: UvrD/REP helicase gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1559 Tresu_1560 Tresu_1560 Tresu_1560 1687330 1687896 + hypothetical protein IMG reference gene:2504608506 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1560 Tresu_1561 Tresu_1561 Tresu_1561 1687952 1689067 - dTDP-glucose 4%2C6-dehydratase COGs: COG1088 dTDP-D-glucose 4 6-dehydratase~InterPro IPR001509:IPR005888~KEGG: tde:TDE1441 dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: dTDP-glucose 4%2C6-dehydratase~SPTR: dTDP-glucose 4%2C6-dehydratase%3B~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~IMG reference gene:2504608507~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: dTDP-glucose 4%2C6-dehydratase gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1561 Tresu_1562 Tresu_1562 Tresu_1562 1689069 1689668 - dTDP-4-dehydrorhamnose 3%2C5-epimerase COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase~InterPro IPR000888~KEGG: bhy:BHWA1_02694 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase-related~PRIAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~SPTR: dTDP-4-dehydrorhamnose 3%2C5-epimerase%3B~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase-related~IMG reference gene:2504608508~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1562 Tresu_1563 Tresu_1563 Tresu_1563 1689668 1690543 - glucose-1-phosphate thymidylyltransferase COGs: COG1209 dTDP-glucose pyrophosphorylase~InterPro IPR005835:IPR005907~KEGG: tde:TDE1440 glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate thymidylyltransferase~SPTR: Glucose-1-phosphate thymidylyltransferase%3B~TIGRFAM: Glucose-1-phosphate thymidylyltransferase%2C long form~IMG reference gene:2504608509~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase%2C short form gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1563 Tresu_1564 Tresu_1564 Tresu_1564 1690561 1691424 - lipopolysaccharide biosynthesis protein InterPro IPR003856~PFAM: Lipopolysaccharide biosynthesis~IMG reference gene:2504608510 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1564 Tresu_1565 Tresu_1565 Tresu_1565 1691473 1693230 - Peptidase S24/S26A/S26B%2C conserved region InterPro IPR019759~KEGG: tde:TDE2219 hypothetical protein~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Signal peptidase I domain protein%3B~IMG reference gene:2504608511~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1565 Tresu_1566 Tresu_1566 Tresu_1566 1693313 1693681 - hypothetical protein IMG reference gene:2504608512 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1566 Tresu_1567 Tresu_1567 Tresu_1567 1693711 1696947 - hypothetical protein COGs: COG1452 Organic solvent tolerance protein OstA~KEGG: tde:TDE1011 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608513 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1567 Tresu_1568 Tresu_1568 Tresu_1568 1696950 1699889 - UvrABC system protein A COGs: COG0178 Excinuclease ATPase subunit~HAMAP: Excinuclease ABC%2C A subunit~InterPro IPR003439:IPR004602~KEGG: tde:TDE1010 excinuclease ABC subunit A~PFAM: ABC transporter-like~SPTR: Excinuclease ABC subunit A%3B~TIGRFAM: Excinuclease ABC%2C A subunit~IMG reference gene:2504608514~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1568 Tresu_1569 Tresu_1569 Tresu_1569 1699951 1701294 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: cce:Ccel_1981 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504608515~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1569 Tresu_1570 Tresu_1570 Tresu_1570 1701491 1702426 - cysteine synthase A COGs: COG0031 Cysteine synthase~InterPro IPR001926:IPR005856:IPR005859~KEGG: bpb:bpr_I1089 cysteine synthase CysK~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Cysteine synthase~SPTR: Cysteine synthase%3B~TIGRFAM: Cysteine synthase A%3B Cysteine synthase K/M~IMG reference gene:2504608516~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: cysteine synthase A%3B cysteine synthases gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1570 Tresu_1571 Tresu_1571 Tresu_1571 1702765 1703193 - transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: bpb:bpr_I2468 Rrf2 family transcriptional regulator~PFAM: Transcription regulator Rrf2~SPTR: Iron-sulfur cluster regulator%3B~TIGRFAM: Transcription regulator Rrf2~IMG reference gene:2504608517~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1571 Tresu_1572 Tresu_1572 Tresu_1572 1703733 1704440 + lipolytic protein G-D-S-L family COGs: COG2755 Lysophospholipase L1 and related esterase~InterPro IPR001087~KEGG: lsg:lse_0534 lipase/acylhydrolase%2C putative~PFAM: Lipase%2C GDSL~SPTR: Lipase/acylhydrolase%2C putative%3B~IMG reference gene:2504608518~PFAM: GDSL-like Lipase/Acylhydrolase gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1572 Tresu_1573 Tresu_1573 Tresu_1573 1704585 1705028 + hypothetical protein KEGG: abu:Abu_0391 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608519~PFAM: Protein of unknown function (DUF3015) gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1573 Tresu_1574 Tresu_1574 Tresu_1574 1705030 1707051 + hypothetical protein KEGG: gem:GM21_0551 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608520 gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1574 Tresu_1575 Tresu_1575 Tresu_1575 1707267 1709375 - methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089:IPR004010~KEGG: tde:TDE2783 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain%3B Cache~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504608521~PFAM: Cache domain%3B HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1575 Tresu_1576 Tresu_1576 Tresu_1576 1709865 1710950 - hypothetical protein KEGG: tpp:TPASS_0422 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608522 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1576 Tresu_1577 Tresu_1577 Tresu_1577 1710926 1712155 - tRNA sulfurtransferase COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase~HAMAP: Thiamine biosynthesis protein~InterPro IPR003720:IPR004114:IPR020536~KEGG: tde:TDE2568 thiamine biosynthesis protein ThiI~PFAM: Thiamine biosynthesis protein%2C C-terminal%3B THUMP~SMART: THUMP~SPTR: Probable tRNA sulfurtransferase%3B~TIGRFAM: Thiamine biosynthesis protein~IMG reference gene:2504608523~PFAM: Thiamine biosynthesis protein (ThiI)%3B THUMP domain~TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1577 Tresu_1578 Tresu_1578 Tresu_1578 1712167 1714059 - hypothetical protein KEGG: tde:TDE1231 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608524 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1578 Tresu_1579 Tresu_1579 Tresu_1579 1714079 1715776 - hypothetical protein KEGG: tde:TDE1234 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608525 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1579 Tresu_1580 Tresu_1580 Tresu_1580 1715837 1717063 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: meh:M301_0256 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2504608526~PFAM: Glycosyl transferases group 1 gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1580 Tresu_1581 Tresu_1581 Tresu_1581 1717015 1717884 + phage SPO1 DNA polymerase-related protein COGs: COG1573 Uracil-DNA glycosylase~InterPro IPR005273:IPR005122~KEGG: tde:TDE2491 DNA polymerase domain-containing protein~PFAM: Uracil-DNA glycosylase-like~SPTR: DNA polymerase domain protein%3B~TIGRFAM: Phage SPO1 DNA polymerase-related protein~IMG reference gene:2504608527~PFAM: Uracil DNA glycosylase superfamily~TIGRFAM: uracil-DNA glycosylase%2C family 4 gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1581 Tresu_1582 Tresu_1582 Tresu_1582 1717874 1719883 + primosomal protein N' COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase~InterPro IPR005259:IPR014001:IPR001650:IPR011545~KEGG: tde:TDE2490 primosomal protein N'~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: Primosomal protein N'%3B~TIGRFAM: Primosomal protein n~IMG reference gene:2504608528~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase~TIGRFAM: primosomal protein N' gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1582 Tresu_1583 Tresu_1583 Tresu_1583 1719988 1721682 - Butyrate--CoA ligase COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase~InterPro IPR000873~KEGG: fsu:Fisuc_3031 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase~PRIAM: Butyrate--CoA ligase~SPTR: AMP-dependent synthetase and ligase%3B~IMG reference gene:2504608529~PFAM: AMP-binding enzyme gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1583 Tresu_1584 Tresu_1584 Tresu_1584 1721858 1724599 + Protein translocase subunit secA COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase)~HAMAP: SecA protein~InterProIPR000185:IPR011115:IPR011130:IPR011116:IPR 004027~KEGG: tde:TDE1898 preprotein translocase subunit SecA~PFAM: SecA DEAD-like%2C N-terminal%3B SecA preprotein%2C cross-linking domain%3B SecA Wing/Scaffold%3B SEC-C motif~SMART: SecA DEAD-like%2C N-terminal%3B SecA preprotein%2C cross-linking domain~SPTR: Protein translocase subunit secA%3B~TIGRFAM: SecA protein~IMG reference gene:2504608530~PFAM: SecA DEAD-like domain%3B SecA preprotein cross-linking domain%3B SEC-C motif%3B SecA Wing and Scaffold domain~TIGRFAM: preprotein translocase%2C SecA subunit gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1584 Tresu_1585 Tresu_1585 Tresu_1585 1724686 1726209 - heat shock protein HslVU%2C ATPase subunit HslU COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit~InterPro IPR004491:IPR003593:IPR013093:IPR019489~KEGG: tde:TDE1211 ATP-dependent protease ATP-binding subunit HslU~PFAM: ATPase%2C AAA-2%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent protease ATPase subunit HslU%3B~TIGRFAM: Heat shock protein HslU~IMG reference gene:2504608531~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent protease HslVU%2C ATPase subunit gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1585 Tresu_1586 Tresu_1586 Tresu_1586 1726211 1726753 - ATP-dependent protease hslV COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit~HAMAP: ATP-dependent protease%2C HslV subunit~InterPro IPR022281:IPR001353~KEGG: tde:TDE1210 ATP-dependent protease peptidase subunit~PFAM: Proteasome%2C subunit alpha/beta~SPTR: ATP-dependent protease subunit HslV%3B~TIGRFAM: ATP-dependent protease%2C HslV subunit~IMG reference gene:2504608532~PFAM: Proteasome subunit~TIGRFAM: ATP-dependent protease HslVU%2C peptidase subunit gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1586 Tresu_1587 Tresu_1587 Tresu_1587 1726787 1727710 - Tyrosine recombinase xerC COGs: COG4974 Site-specific recombinase XerD~HAMAP: Tyrosine recombinase xerC~InterPro IPR004107:IPR002104~KEGG: tde:TDE1209 phage integrase family site specific recombinase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Tyrosine recombinase xerC%3B~IMG reference gene:2504608533~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1587 Tresu_1588 Tresu_1588 Tresu_1588 1727703 1729898 - DNA topoisomerase I COGs: COG0550 Topoisomerase IA~InterProIPR005733:IPR006171:IPR003601:IPR003602:IPR 013497:IPR013498~KEGG: tde:TDE1208 DNA topoisomerase I~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain%3B DNA topoisomerase%2C type IA%2C zn finger~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~SPTR: DNA topoisomerase%3B~TIGRFAM: DNA topoisomerase I%2C bacterial-type~IMG reference gene:2504608534~PFAM: Toprim domain%3B Topoisomerase DNA binding C4 zinc finger%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase I%2C bacterial gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1588 Tresu_1589 Tresu_1589 Tresu_1589 1729909 1730865 - SMF family protein COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake~InterPro IPR003488~KEGG: tde:TDE1207 DNA processing protein DprA%2C putative~PFAM: DNA recombination-mediator protein A~SPTR: Smf protein%3B~IMG reference gene:2504608535~PFAM: DNA recombination-mediator protein A~TIGRFAM: DNA protecting protein DprA gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1589 Tresu_1590 Tresu_1590 Tresu_1590 1730904 1731638 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR013105~KEGG: tde:TDE1206 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504608536~PFAM: Tetratricopeptide repeat gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1590 Tresu_1591 Tresu_1591 Tresu_1591 1731656 1732549 - Tyrosine recombinase xerC COGs: COG4974 Site-specific recombinase XerD~HAMAP: Tyrosine recombinase xerC~InterPro IPR004107:IPR002104~KEGG: ssm:Spirs_1553 tyrosine recombinase XerD~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Tyrosine recombinase XerD%3B~IMG reference gene:2504608537~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1591 Tresu_1592 Tresu_1592 Tresu_1592 1732553 1734040 - cell division protein FtsZ COGs: COG0206 Cell division GTPase~InterPro IPR000158:IPR003008:IPR018316~KEGG: ssm:Spirs_1552 cell division protein FtsZ~PFAM: Tubulin/FtsZ%2C GTPase domain%3B Tubulin/FtsZ%2C 2-layer sandwich domain~SMART: Tubulin/FtsZ%2C GTPase domain%3B Tubulin/FtsZ%2C 2-layer sandwich domain~SPTR: Cell division protein ftsZ%3B~TIGRFAM: Cell division protein FtsZ%2C N-terminal~IMG reference gene:2504608538~PFAM: Tubulin/FtsZ family%2C GTPase domain%3B FtsZ family%2C C-terminal domain~TIGRFAM: cell division protein FtsZ gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1592 Tresu_1593 Tresu_1593 Tresu_1593 1734117 1735361 - cell division protein FtsA COGs: COG0849 Actin-like ATPase involved in cell division~InterPro IPR020823:IPR003494~KEGG: sta:STHERM_c08980 cell division protein FtsA~PFAM: Cell division protein FtsA domain~SMART: Cell division protein FtsA domain~SPTR: Cell division protein FtsA%3B~TIGRFAM: Cell division protein family FtsA~IMG reference gene:2504608539~PFAM: Cell division protein FtsA~TIGRFAM: cell division protein FtsA gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1593 Tresu_1594 Tresu_1594 Tresu_1594 1735374 1736216 - Polypeptide-transport-associated domain protein FtsQ-type COGs: COG1589 Cell division septal protein~InterPro IPR013685~KEGG: tde:TDE1202 cell division protein FtsQ%2C putative~PFAM: Polypeptide-transport-associated%2C FtsQ-type~SPTR: Cell division protein FtsQ%2C putative%3B~IMG reference gene:2504608540~PFAM: POTRA domain%2C FtsQ-type gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1594 Tresu_1595 Tresu_1595 Tresu_1595 1736209 1737417 - cell cycle protein COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR001182~KEGG: tde:TDE1201 cell cycle protein FtsW~PFAM: Cell cycle protein~SPTR: Cell cycle protein%2C FtsW/RodA/SpoVE family%3B~IMG reference gene:2504608541~PFAM: Cell cycle protein gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1595 Tresu_1596 Tresu_1596 Tresu_1596 1737420 1738853 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanylligase COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase~InterPro IPR005863:IPR000713:IPR013221:IPR004101~KEGG: tde:TDE1200 UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate- -D-alanyl- D-alanyl ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal~PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase~SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase%3B~TIGRFAM: UDP-MurNAc-pentapeptide synthetase~IMG reference gene:2504608542~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1596 Tresu_1597 Tresu_1597 Tresu_1597 1738840 1739139 - cell division protein FtsL InterPro IPR011922:IPR007060~KEGG: tde:TDE1199 cell division protein FtsL%2C putative~PFAM: Septum formation initiator~SPTR: Cell division protein FtsL%2C putative%3B~TIGRFAM: Cell division protein%2C FtsL -like~IMG reference gene:2504608543~PFAM: Cell division protein FtsL~TIGRFAM: cell division protein FtsL gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1597 Tresu_1598 Tresu_1598 Tresu_1598 1739139 1740161 - Ribosomal RNA small subunit methyltransferase H COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis~HAMAP: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~InterPro IPR002903~KEGG: tde:TDE1198 S-adenosyl-methyltransferase MraW~PFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~SPTR: Ribosomal RNA small subunit methyltransferase H%3B~TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~IMG reference gene:2504608544~PFAM: MraW methylase family~TIGRFAM: S-adenosyl-methyltransferase MraW gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1598 Tresu_1599 Tresu_1599 Tresu_1599 1740158 1740601 - Protein mraZ COGs: COG2001 conserved hypothetical protein~HAMAP: MraZ~InterPro IPR003444:IPR020603~KEGG: tde:TDE1197 cell division protein MraZ~PFAM: MraZ domain~SPTR: Protein MraZ%3B~TIGRFAM: MraZ~IMG reference gene:2504608545~PFAM: MraZ protein~TIGRFAM: mraZ protein gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1599 Tresu_1600 Tresu_1600 Tresu_1600 1740787 1741524 + hypothetical protein KEGG: tde:TDE1410 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608546 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1600 Tresu_1601 Tresu_1601 Tresu_1601 1741490 1741975 - Crossover junction endodeoxyribonuclease ruvC COGs: COG0817 Holliday junction resolvasome endonuclease subunit~HAMAP: Crossover junction endodeoxyribonuclease RuvC~InterPro IPR002176~KEGG: tpp:TPASS_0517 Holliday junction nuclease%2C subunit C~PFAM: Crossover junction endodeoxyribonuclease RuvC~PRIAM: Crossover junction endodeoxyribonuclease~SPTR: Crossover junction endodeoxyribonuclease ruvC%3B~TIGRFAM: Crossover junction endodeoxyribonuclease RuvC~IMG reference gene:2504608547~PFAM: Crossover junction endodeoxyribonuclease RuvC~TIGRFAM: crossover junction endodeoxyribonuclease RuvC gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1601 Tresu_1602 Tresu_1602 Tresu_1602 1742057 1742800 - UPF0082 protein yeeN COGs: COG0217 conserved hypothetical protein~HAMAP: Protein of unknown function DUF28~InterPro IPR002876~KEGG: tde:TDE1487 hypothetical protein~PFAM: Protein of unknown function DUF28~SPTR: UPF0082 protein TREVI0001_2477%3B~TIGRFAM: Protein of unknown function DUF28~IMG reference gene:2504608548~PFAM: Domain of unknown function DUF28~TIGRFAM: DNA-binding regulatory protein%2C YebC/PmpR family gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1602 Tresu_1603 Tresu_1603 Tresu_1603 1742982 1743263 + hypothetical protein IMG reference gene:2504608549 gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1603 Tresu_1604 Tresu_1604 Tresu_1604 1743413 1744627 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: ssb:SSUBM407_0724 transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504608550~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1604 Tresu_1605 Tresu_1605 Tresu_1605 1744720 1745391 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tpp:TPASS_0231 hypothetical protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Ribosomal large subunit pseudouridine synthase C%3B~IMG reference gene:2504608551~PFAM: RNA pseudouridylate synthase gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1605 Tresu_1606 Tresu_1606 Tresu_1606 1745485 1746642 + hypothetical protein KEGG: tde:TDE1451 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608552 gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1606 Tresu_1607 Tresu_1607 Tresu_1607 1746673 1747320 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR010093:IPR000551:IPR002178~KEGG: tde:TDE1079 DNA-binding protein/PTS system%2C IIA component~PFAM: HTH transcriptional regulator%2C MerR%3B Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: DNA-binding protein/PTS system%2C IIA component%3B~TIGRFAM: Excisionase/Xis%2C DNA-binding~IMG reference gene:2504608553~PFAM: Prophage CP4-57 regulatory protein (AlpA)%3B Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2~TIGRFAM: DNA binding domain%2C excisionase family gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1607 Tresu_1608 Tresu_1608 Tresu_1608 1747434 1748258 - hypothetical protein KEGG: ssm:Spirs_2341 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504608554 gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1608 Tresu_1609 Tresu_1609 Tresu_1609 1748319 1748759 + regulatory protein MarR InterPro IPR000835~KEGG: str:Sterm_1308 transcriptional regulator%2C MarR family~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR~SPTR: MarR-family transcriptional regulator%3B~IMG reference gene:2504608555~PFAM: MarR family gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1609 Tresu_1610 Tresu_1610 Tresu_1610 1748809 1749042 + pseudogene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1610 Tresu_1611 Tresu_1611 Tresu_1611 1749126 1749560 - response regulator receiver protein COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~InterPro IPR001789~KEGG: tde:TDE1494 chemotaxis protein CheY~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain~SPTR: Response regulator receiver domain protein%3B~IMG reference gene:2504608557~PFAM: Response regulator receiver domain gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1611 Tresu_1612 Tresu_1612 Tresu_1612 1749576 1750058 - CheC domain protein COGs: COG1406 inhibitor of MCP methylation homolog of CheC~InterPro IPR007597~KEGG: tpp:TPASS_0365 chemotaxis protein~PFAM: CheC-like protein~SPTR: Chemotaxis protein (CheX)%3B~IMG reference gene:2504608558~PFAM: CheC-like family gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1612 Tresu_1613 Tresu_1613 Tresu_1613 1750092 1751501 - MCP methyltransferase%2C CheR-type COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545:IPR000780:IPR022642~KEGG: tde:TDE1492 chemotaxis protein CheW~PFAM: CheW-like protein%3B MCP methyltransferase%2C CheR-type%2C SAM-binding domain%2C C-terminal~SMART: CheW-like protein%3B MCP methyltransferase%2C CheR-type~SPTR: CheW%3B~IMG reference gene:2504608559~PFAM: CheW-like domain%3B CheR methyltransferase%2C SAM binding domain gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1613 Tresu_1614 Tresu_1614 Tresu_1614 1751505 1753943 - CheA signal transduction histidine kinase COGs: COG0643 Chemotaxis protein histidine kinase and related kinase~InterProIPR008207:IPR003594:IPR002545:IPR010808:IPR 004105~KEGG: tde:TDE1491 chemotaxis protein CheA~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C P2 response regulator-binding%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain%3B Signal transduction histidine kinase%2C subgroup%2C homodimeric%3B CheW-like protein~SMART: CheW-like protein%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain%3B ATPase-like%2C ATP-binding domain~SPTR: P2 response regulator binding domain protein%3B~IMG reference gene:2504608560~PFAM: CheW-like domain%3B P2 response regulator binding domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Signal transducing histidine kinase%2C homodimeric domain%3B Hpt domain gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1614 Tresu_1615 Tresu_1615 Tresu_1615 1754115 1755365 + hypothetical protein IMG reference gene:2504608561 gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1615 Tresu_1616 Tresu_1616 Tresu_1616 1755369 1756046 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: aoe:Clos_0324 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504608562~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1616 Tresu_1617 Tresu_1617 Tresu_1617 1756175 1756672 - UspA domain-containing protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006016~KEGG: mfs:MFS40622_0301 UspA domain protein~PFAM: UspA~SPTR: UspA domain protein%3B~IMG reference gene:2504608563~PFAM: Universal stress protein family gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1617 Tresu_1618 Tresu_1618 Tresu_1618 1756669 1757292 - V-type ATP synthase subunit D COGs: COG1394 H+-ATPase subunit D~HAMAP: ATPase%2C V1/A1 complex%2C subunit D~InterPro IPR002699~KEGG: tpp:TPASS_0527 V-type ATPase%2C subunit D~PFAM: ATPase%2C V1/A1 complex%2C subunit D~SPTR: V-type ATP synthase subunit D 2%3B~TIGRFAM: ATPase%2C V1/A1 complex%2C subunit D~IMG reference gene:2504608564~PFAM: ATP synthase subunit D~TIGRFAM: H(+)-transporting ATP synthase%2C vacuolar type%2C subunit D gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1618 Tresu_1619 Tresu_1619 Tresu_1619 1757295 1758680 - V-type ATP synthase beta chain COGs: COG1156 H+-ATPase subunit B~HAMAP: V-type ATP synthase regulatory subunit B/beta~InterPro IPR022879:IPR004100:IPR000194:IPR000793~KEGG: tpp:TPASS_0528 V-type ATP synthase subunit B~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal~SPTR: V-type ATP synthase beta chain 2%3B~IMG reference gene:2504608565~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1619 Tresu_1620 Tresu_1620 Tresu_1620 1758677 1760467 - V-type ATP synthase alpha chain COGs: COG1155 H+-ATPase subunit A~HAMAP: V-type ATP synthase catalytic subunit A/alpha~InterPro IPR022878:IPR004100:IPR000194:IPR000793~KEGG: tpp:TPASS_0529 V-type ATP synthase subunit A~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal~SPTR: V-type ATP synthase alpha chain 2%3B~IMG reference gene:2504608566~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1620 Tresu_1621 Tresu_1621 Tresu_1621 1760464 1761102 - putative V-type ATPase%2C subunit E KEGG: tpp:TPASS_0530 possible V-type ATPase%2C subunit E~SPTR: V-type ATPase%2C subunit E%2C putative%3B~IMG reference gene:2504608567 gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1621 Tresu_1622 Tresu_1622 Tresu_1622 1761266 1761595 - Vacuolar H+transporting two-sector ATPase F subunit COGs: COG1436 H+-ATPase subunit F~InterPro IPR008218~KEGG: tpp:TPASS_0531 possible V-type ATPase%2C subunit F~PFAM: ATPase%2C V1/A1 complex%2C subunit F~SPTR: ATP synthase (F/14-kDa) subunit%3B~IMG reference gene:2504608568~PFAM: ATP synthase (F/14-kDa) subunit gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1622 Tresu_1623 Tresu_1623 Tresu_1623 1761671 1761997 - H+transporting two-sector ATPase C subunit InterPro IPR002379~KEGG: csh:Closa_4195 H+transporting two-sector ATPase C subunit~PFAM: ATPase%2C F0/V0 complex%2C subunit C~SPTR: H-ATPase homolog%3B~IMG reference gene:2504608569~PFAM: ATP synthase subunit C gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1623 Tresu_1624 Tresu_1624 Tresu_1624 1762059 1764047 - V-type ATPase 116 kDa subunit COGs: COG1269 H+-ATPase subunit I~InterPro IPR002490~KEGG: tpp:TPASS_0533 V-type ATPase%2C subunit I~PFAM: ATPase%2C V0/A0 complex%2C 116kDa subunit~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608570~PFAM: V-type ATPase 116kDa subunit family gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1624 Tresu_1625 Tresu_1625 Tresu_1625 1764040 1765071 - hypothetical protein KEGG: tpp:TPASS_0534 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608571 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1625 Tresu_1626 Tresu_1626 Tresu_1626 1765081 1765389 - hypothetical protein IMG reference gene:2504608572 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1626 Tresu_1627 Tresu_1627 Tresu_1627 1765422 1765880 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: ssm:Spirs_3104 putative PTS IIA-like nitrogen-regulatory protein PtsN~PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: Phosphoenolpyruvate-dependent sugar PTS family porter%2C EIIA 2%3B~IMG reference gene:2504608573~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1627 Tresu_1628 Tresu_1628 Tresu_1628 1765922 1766263 - preprotein translocase%2C SecG subunit COGs: COG1314 Preprotein translocase subunit SecG~InterPro IPR004692~KEGG: tpp:TPASS_0536 preprotein translocase subunit SecG~PFAM: Preprotein translocase SecG subunit~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Preprotein translocase SecG subunit~IMG reference gene:2504608574~PFAM: Preprotein translocase SecG subunit~TIGRFAM: protein translocase%2C SecG subunit gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1628 Tresu_1629 Tresu_1629 Tresu_1629 1766491 1767804 + hypothetical protein COGs: COG4222 conserved hypothetical protein~KEGG: ssm:Spirs_1076 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608575 gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1629 Tresu_1630 Tresu_1630 Tresu_1630 1767983 1768960 - Domain of unknown function DUF88 InterPro IPR021139~KEGG: tde:TDE2536 hypothetical protein~PFAM: Domain of unknown function DUF88~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608576~PFAM: Protein of unknown function DUF88 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1630 Tresu_1631 Tresu_1631 Tresu_1631 1769054 1769272 - hypothetical protein SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504608577 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1631 Tresu_1632 Tresu_1632 Tresu_1632 1769259 1769438 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608578 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1632 Tresu_1633 Tresu_1633 Tresu_1633 1769435 1769659 - hypothetical protein KEGG: bvu:BVU_3458 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608579 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1633 Tresu_1634 Tresu_1634 Tresu_1634 1769672 1770442 - Domain of unknown function DUF1828 InterPro IPR014960:IPR014961~KEGG: pph:Ppha_0168 hypothetical protein~PFAM: Domain of unknown function DUF1828%3B Domain of unknown function DUF1829~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608580~PFAM: Domain of unknown function DUF1829%3B Domain of unknown function DUF1828 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1634 Tresu_1635 Tresu_1635 Tresu_1635 1770439 1770900 - putative Lj965 prophage protein KEGG: hap:HAPS_1718 possible Lj965 prophage protein~SPTR: Possible Lj965 prophage protein%3B~IMG reference gene:2504608581 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1635 Tresu_1636 Tresu_1636 Tresu_1636 1770951 1772000 - RNA polymerase%2C sigma 32 subunit%2C RpoH COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterPro IPR014284:IPR007627:IPR007630~KEGG: csh:Closa_2190 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504608582~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1636 Tresu_1637 Tresu_1637 Tresu_1637 1772010 1772546 - hypothetical protein KEGG: ckn:Calkro_0030 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608583 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1637 Tresu_1638 Tresu_1638 Tresu_1638 1772549 1774549 - hypothetical protein COGs: COG0419 ATPase involved in DNA repair~KEGG: fsu:Fisuc_1671 hypothetical protein~SPTR: Putative DNA sulfur modification protein DndD%3B~IMG reference gene:2504608584~TIGRFAM: DNA sulfur modification protein DndD gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1638 Tresu_1639 Tresu_1639 Tresu_1639 1774540 1774716 - hypothetical protein IMG reference gene:2504608585 gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1639 Tresu_1640 Tresu_1640 Tresu_1640 1774706 1776940 - type III restriction protein res subunit COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR014001:IPR001650:IPR006935~KEGG: fsu:Fisuc_1669 type III restriction protein res subunit~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Helicase%2C C-terminal~SMART: Helicase%2C C-terminal%3B DEAD-like helicase%2C N-terminal~SPTR: DEAD/DEAH box helicase%3B~IMG reference gene:2504608586~PFAM: Helicase conserved C-terminal domain%3B Type III restriction enzyme%2C res subunit~TIGRFAM: DNA phosphorothioation system restriction enzyme gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1640 Tresu_1641 Tresu_1641 Tresu_1641 1776952 1778112 - Cysteine desulfurase COGs: COG0520 Selenocysteine lyase~InterPro IPR000192~KEGG: fsu:Fisuc_1668 cysteine desulfurase family protein~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Cysteine desulfurase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608587~PFAM: Aminotransferase class-V~TIGRFAM: cysteine desulfurase family protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1641 Tresu_1642 Tresu_1642 Tresu_1642 1778123 1781971 - hypothetical protein KEGG: fnu:FN0446 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608588 gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1642 Tresu_1643 Tresu_1643 Tresu_1643 1781968 1782897 - hypothetical protein KEGG: fnu:FN0445 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608589 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1643 Tresu_1644 Tresu_1644 Tresu_1644 1783049 1784758 - phosphoadenosine phosphosulfate reductase COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase~InterPro IPR002500:IPR001450~KEGG: fsu:Fisuc_1665 phosphoadenosine phosphosulfate reductase~PFAM: Phosphoadenosine phosphosulphate reductase%3B 4Fe-4S binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608590~PFAM: Phosphoadenosine phosphosulfate reductase family gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1644 Tresu_1645 Tresu_1645 Tresu_1645 1784755 1784877 - hypothetical protein IMG reference gene:2504608591 gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1645 Tresu_1646 Tresu_1646 Tresu_1646 1784945 1785229 - hypothetical protein KEGG: tde:TDE1806 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608592 gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1646 Tresu_1647 Tresu_1647 Tresu_1647 1785180 1785491 - protein of unknown function DUF497 COGs: COG2929 conserved hypothetical protein~InterPro IPR007460~KEGG: tde:TDE2051 hypothetical protein~PFAM: Protein of unknown function DUF497~SPTR: Putative toxin-antitoxin system%2C toxin component%3B~IMG reference gene:2504608593~PFAM: Protein of unknown function (DUF497) gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1647 Tresu_1648 Tresu_1648 Tresu_1648 1785573 1788209 + type III restriction protein res subunit COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR014001:IPR001650:IPR006935~KEGG: swo:Swol_1001 superfamily II DNA/RNA helicase~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Helicase%2C C-terminal~SMART: Helicase%2C C-terminal%3B DEAD-like helicase%2C N-terminal~SPTR: DNA or RNA helicases of superfamily II-like protein%3B~IMG reference gene:2504608594~PFAM: Helicase conserved C-terminal domain%3B Type III restriction enzyme%2C res subunit gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1648 Tresu_1649 Tresu_1649 Tresu_1649 1788211 1788906 + Methyltransferase type 12 InterPro IPR013217~KEGG: ere:EUBREC_3435 hypothetical protein~PFAM: Methyltransferase type 12~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608595~PFAM: Methyltransferase domain gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1649 Tresu_1650 Tresu_1650 Tresu_1650 1788831 1789514 - DNA-3-methyladenine glycosylase I COGs: COG2818 3-methyladenine DNA glycosylase~InterPro IPR005019~KEGG: bll:BLJ_0731 3-methyladenine DNA glycosylase~PFAM: Methyladenine glycosylase~PRIAM: DNA-3-methyladenine glycosylase I~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608596~PFAM: Methyladenine glycosylase~TIGRFAM: DNA-3-methyladenine glycosylase I gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1650 Tresu_1651 Tresu_1651 Tresu_1651 1789511 1789867 - arsenate reductase-related protein KEGG: ele:Elen_1470 arsenate reductase and related~SPTR: Arsenate reductase and related proteins%2C glutaredoxin family%3B~IMG reference gene:2504608597~PFAM: ArsC family gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1651 Tresu_1652 Tresu_1652 Tresu_1652 1789947 1790494 + pseudogene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1652 Tresu_1653 Tresu_1653 Tresu_1653 1790559 1790789 - hypothetical protein KEGG: pmz:HMPREF0659_A6232 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608599 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1653 Tresu_1654 Tresu_1654 Tresu_1654 1790782 1791291 - hypothetical protein KEGG: bvu:BVU_3459 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608600 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1654 Tresu_1655 Tresu_1655 Tresu_1655 1791288 1791512 - hypothetical protein KEGG: bvu:BVU_3458 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608601 gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1655 Tresu_1656 Tresu_1656 Tresu_1656 1791628 1791899 - pseudogene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1656 Tresu_1657 Tresu_1657 Tresu_1657 1792152 1792889 - TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130~KEGG: tde:TDE0966 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~IMG reference gene:2504608603~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1657 Tresu_1658 Tresu_1658 Tresu_1658 1793012 1793233 + hypothetical protein KEGG: tde:TDE0967 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504608604 gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1658 Tresu_1659 Tresu_1659 Tresu_1659 1793230 1794186 - tRNA dimethylallyltransferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase~InterPro IPR018022:IPR002627~KEGG: tde:TDE1447 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: tRNA dimethylallyltransferase 2%3B~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~IMG reference gene:2504608605~PFAM: IPP transferase~TIGRFAM: tRNA dimethylallyltransferase gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1659 Tresu_1660 Tresu_1660 Tresu_1660 1794191 1795438 - protein of unknown function Met10 COGs: COG1092 SAM-dependent methyltransferase~InterPro IPR003402~KEGG: ttm:Tthe_1538 protein of unknown function Met10~PFAM: Protein of unknown function Met10~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608606~PFAM: S-adenosylmethionine-dependent methyltransferase gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1660 Tresu_1661 Tresu_1661 Tresu_1661 1795552 1796823 - Phosphoglycerate kinase COGs: COG0126 3-phosphoglycerate kinase~HAMAP: Phosphoglycerate kinase~InterPro IPR001576~KEGG: tde:TDE1715 phosphoglycerate kinase~PFAM: Phosphoglycerate kinase~PRIAM: Phosphoglycerate kinase~SPTR: Phosphoglycerate kinase%3B~IMG reference gene:2504608607~PFAM: Phosphoglycerate kinase gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1661 Tresu_1662 Tresu_1662 Tresu_1662 1796918 1799053 - Tetratricopeptide TPR_1 repeat-containing protein COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats~InterPro IPR019734:IPR013105:IPR001440~KEGG: tde:TDE1244 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504608608~PFAM: Coatomer epsilon subunit%3B Tetratricopeptide repeat gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1662 Tresu_1663 Tresu_1663 Tresu_1663 1799084 1799866 - CBS domain containing protein COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR005170~KEGG: tde:TDE1243 hemolysin C~PFAM: Cystathionine beta-synthase%2C core%3B Transporter-associated domain~SMART: Cystathionine beta-synthase%2C core~SPTR: Hemolysin C%3B~IMG reference gene:2504608609~PFAM: CBS domain%3B Transporter associated domain gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1663 Tresu_1664 Tresu_1664 Tresu_1664 1799875 1800369 - metalloprotease ybeY COGs: COG0319 metal-dependent hydrolase~HAMAP: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted~InterPro IPR002036~KEGG: tde:TDE1242 putative metalloprotease~PFAM: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted~SPTR: Putative metalloprotease TREVI0001_1034%3B~TIGRFAM: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted~IMG reference gene:2504608610~PFAM: Uncharacterized protein family UPF0054~TIGRFAM: metalloprotein%2C YbeY/UPF0054 family gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1664 Tresu_1665 Tresu_1665 Tresu_1665 1800369 1802171 - 7TM receptor with intracellular metal dependent phosphohydrolase COGs: COG1480 membrane-associated HD superfamily hydrolase~InterPro IPR006675:IPR003607:IPR011621:IPR006674~KEGG: tde:TDE1241 HD domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain%3B Metal-dependent phosphohydrolase%2C 7TM intracellular domain~SMART: Metal-dependent phosphohydrolase%2C HD domain~SPTR: HD domain protein%3B~TIGRFAM: Uncharacterised protein family HDIG~IMG reference gene:2504608611~PFAM: HD domain%3B 7TM receptor with intracellular HD hydrolase~TIGRFAM: uncharacterized domain HDIG gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1665 Tresu_1666 Tresu_1666 Tresu_1666 1802158 1803090 - PhoH family protein COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase~InterPro IPR003714~KEGG: tde:TDE1240 PhoH family protein~PFAM: PhoH-like protein~SPTR: PhoH family protein%3B~IMG reference gene:2504608612~PFAM: PhoH-like protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1666 Tresu_1667 Tresu_1667 Tresu_1667 1803160 1803780 - hypothetical protein KEGG: tde:TDE1690 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608613 gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1667 Tresu_1668 Tresu_1668 Tresu_1668 1803820 1806558 - Valyl-tRNA synthetase COGs: COG0525 Valyl-tRNA synthetase~HAMAP: Valyl-tRNA synthetase~InterPro IPR002303:IPR002300:IPR013155:IPR019499~KEGG: tde:TDE1364 valyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ia%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding%3B Valyl-tRNA synthetase%2C class Ia%2C tRNA-binding arm~PRIAM: Valine--tRNA ligase~SPTR: Valyl-tRNA synthetase%3B~TIGRFAM: Valyl-tRNA synthetase~IMG reference gene:2504608614~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain%3B Valyl tRNA synthetase tRNA binding arm~TIGRFAM: valyl-tRNA synthetase gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1668 Tresu_1669 Tresu_1669 Tresu_1669 1807508 1808467 - Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: aar:Acear_0911 protein of unknown function DUF323~PFAM: Sulphatase-modifying factor~SPTR: Lipoprotein%3B~IMG reference gene:2504608615~PFAM: Formylglycine-generating sulfatase enzyme gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1669 Tresu_1670 Tresu_1670 Tresu_1670 1808464 1808577 - hypothetical protein IMG reference gene:2504608616 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1670 Tresu_1671 Tresu_1671 Tresu_1671 1808830 1810560 + pseudogene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1671 Tresu_1672 Tresu_1672 Tresu_1672 1810585 1811037 + NUDIX hydrolase InterPro IPR000086~KEGG: pru:PRU_0662 mutator MutT protein~PFAM: NUDIX hydrolase domain~SPTR: Mutator mutT protein%3B~IMG reference gene:2504608618~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1672 Tresu_1673 Tresu_1673 Tresu_1673 1811300 1811998 + protein of unknown function DUF541 COGs: COG2859 conserved hypothetical protein~InterPro IPR007497~KEGG: cff:CFF8240_1748 hypothetical protein~PFAM: Protein of unknown function DUF541~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608619~PFAM: Protein of unknown function (DUF541) gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1673 Tresu_1674 Tresu_1674 Tresu_1674 1812115 1812471 - arsenate reductase-related protein KEGG: ele:Elen_1470 arsenate reductase and related~SPTR: Arsenate reductase and related proteins%2C glutaredoxin family%3B~IMG reference gene:2504608620~PFAM: ArsC family gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1674 Tresu_1675 Tresu_1675 Tresu_1675 1812596 1813816 + hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: lba:Lebu_0098 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608621 gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1675 Tresu_1676 Tresu_1676 Tresu_1676 1813889 1814473 + Conserved hypothetical protein CHP01440 COGs: COG4475 conserved hypothetical protein~InterPro IPR006340~KEGG: tde:TDE1278 hypothetical protein~PFAM: Uncharacterised protein family UPF0340~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Uncharacterised protein family UPF0340~IMG reference gene:2504608622~PFAM: Protein of unknown function (DUF436)~TIGRFAM: TIGR01440 family protein gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1676 Tresu_1677 Tresu_1677 Tresu_1677 1814701 1815996 + protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550:IPR005170~KEGG: elm:ELI_3070 hypothetical protein~PFAM: Domain of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated domain~SPTR: CBS domain pair%3B~IMG reference gene:2504608623~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1677 Tresu_1678 Tresu_1678 Tresu_1678 1816188 1816604 + hypothetical protein IMG reference gene:2504608624 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1678 Tresu_1679 Tresu_1679 Tresu_1679 1816868 1817542 - pseudogene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1679 Tresu_1680 Tresu_1680 Tresu_1680 1817543 1818049 - hypothetical protein KEGG: nla:NLA_1360 hypothetical protein~SPTR: Identified by MetaGeneAnnotator%3B~IMG reference gene:2504608626 gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1680 Tresu_1681 Tresu_1681 Tresu_1681 1818046 1818288 - hypothetical protein IMG reference gene:2504608627 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1681 Tresu_1682 Tresu_1682 Tresu_1682 1818282 1818671 - DNA (cytosine-5-)-methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: ngk:NGK_2479 modification methylase NgoPII~PFAM: C-5 cytosine methyltransferase~PRIAM: DNA (cytosine-5-)-methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~IMG reference gene:2504608628~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1682 Tresu_1683 Tresu_1683 Tresu_1683 1819158 1819868 + hypothetical protein KEGG: dps:DP2996 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608629 gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1683 Tresu_1684 Tresu_1684 Tresu_1684 1819974 1820138 - pseudogene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1684 Tresu_1685 Tresu_1685 Tresu_1685 1820337 1820990 + Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: sga:GALLO_2043 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608631~PFAM: Methyltransferase domain gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1685 Tresu_1686 Tresu_1686 Tresu_1686 1821134 1821919 + Tsp45I type II restriction protein InterPro IPR010443~KEGG: cch:Cag_1391 putative type II restriction enzyme~PFAM: Restriction endonuclease%2C type II%2C Tsp45I~SPTR: Putative type II restriction enzyme%3B~IMG reference gene:2504608632~PFAM: Tsp45I type II restriction enzyme gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1686 Tresu_1687 Tresu_1687 Tresu_1687 1821933 1823123 + DNA methylase N-4/N-6 domain protein COGs: COG2189 Adenine specific DNA methylase Mod~InterPro IPR002941~KEGG: cch:Cag_1392 putative type II DNA modification enzyme (methyltransferase)~PFAM: DNA methylase N-4/N-6~SPTR: Putative type II DNA modification enzyme (Methyltransferase)%3B~IMG reference gene:2504608633~PFAM: DNA methylase gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1687 Tresu_1688 Tresu_1688 Tresu_1688 1823144 1824502 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594~KEGG: ssm:Spirs_2696 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SPTR: Histidine kinase%3B~IMG reference gene:2504608634~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1688 Tresu_1689 Tresu_1689 Tresu_1689 1824506 1825207 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: ssm:Spirs_2695 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504608635~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1689 Tresu_1690 Tresu_1690 Tresu_1690 1825211 1826125 - YD repeat-containing protein KEGG: ssm:Spirs_2694 YD repeat-containing protein~SPTR: YD repeat-containing protein%3B~IMG reference gene:2504608636 gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1690 Tresu_1691 Tresu_1691 Tresu_1691 1826199 1827077 - DNA methylase N-4/N-6 domain protein COGs: COG0863 DNA modification methylase~InterPro IPR002941~KEGG: ran:Riean_1819 DNA methylase N-4/N-6 domain protein~PFAM: DNA methylase N-4/N-6~SPTR: DNA (Cytosine-5-)-methyltransferase%3B~IMG reference gene:2504608637~PFAM: DNA methylase gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1691 Tresu_1692 Tresu_1692 Tresu_1692 1827079 1827609 - hypothetical protein KEGG: cjd:JJD26997_1953 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608638 gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1692 Tresu_1693 Tresu_1693 Tresu_1693 1827618 1828088 - hypothetical protein KEGG: cni:Calni_1852 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608639 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1693 Tresu_1694 Tresu_1694 Tresu_1694 1828110 1828970 - Type II site-specific deoxyribonuclease InterPro IPR007637~KEGG: eel:EUBELI_01767 type II restriction enzyme~PFAM: Restriction endonuclease%2C type II%2C DpmII-like~PRIAM: Type II site-specific deoxyribonuclease~SPTR: DpnII restriction endonuclease%3B~IMG reference gene:2504608640~PFAM: DpnII restriction endonuclease gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1694 Tresu_1695 Tresu_1695 Tresu_1695 1828981 1829520 - hypothetical protein IMG reference gene:2504608641 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1695 Tresu_1696 Tresu_1696 Tresu_1696 1829533 1830429 - DNA adenine methylase COGs: COG0338 Site-specific DNA methylase~InterPro IPR012327~KEGG: lba:Lebu_2246 DNA adenine methylase~PFAM: D12 class N6 adenine-specific DNA methyltransferase~SPTR: DNA adenine methylase (Dam)%3B~TIGRFAM: D12 class N6 adenine-specific DNA methyltransferase~IMG reference gene:2504608642~PFAM: D12 class N6 adenine-specific DNA methyltransferase~TIGRFAM: DNA adenine methylase (dam) gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1696 Tresu_1697 Tresu_1697 Tresu_1697 1830753 1831028 - hypothetical protein IMG reference gene:2504608643 gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1697 Tresu_1698 Tresu_1698 Tresu_1698 1831127 1831669 - hypothetical protein IMG reference gene:2504608644 gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1698 Tresu_1699 Tresu_1699 Tresu_1699 1832057 1832371 - hypothetical protein IMG reference gene:2504608645 gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1699 Tresu_1700 Tresu_1700 Tresu_1700 1832371 1832787 - hypothetical protein KEGG: eel:EUBELI_20537 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608646 gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1700 Tresu_1701 Tresu_1701 Tresu_1701 1832993 1834372 - protein of unknown function DUF111 COGs: COG1641 conserved hypothetical protein~InterPro IPR002822~KEGG: afn:Acfer_1004 protein of unknown function DUF111~PFAM: Uncharacterised protein family UPF0272~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Uncharacterised protein family UPF0272~IMG reference gene:2504608647~PFAM: Protein of unknown function DUF111~TIGRFAM: TIGR00299 family protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1701 Tresu_1702 Tresu_1702 Tresu_1702 1834369 1835070 - 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase COGs: COG1691 NCAIR mutase (PurE)-related protein~InterPro IPR000031~KEGG: afn:Acfer_1003 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PFAM: Phosphoribosylaminoimidazole carboxylase%2C core~SPTR: NCAIR mutase%3B~IMG reference gene:2504608648~PFAM: AIR carboxylase gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1702 Tresu_1703 Tresu_1703 Tresu_1703 1835067 1836215 - transcriptional regulator%2C AraC family COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily~InterPro IPR005232:IPR000005:IPR011063~KEGG: afn:Acfer_1002 PP-loop domain protein~PFAM: HTH transcriptional regulator%2C AraC%3B tRNA(Ile)-lysidine/2-thiocytidine synthase~SPTR: PP-loop domain protein%3B~TIGRFAM: Conserved hypothetical protein CHP00268~IMG reference gene:2504608649~PFAM: Asparagine synthase~TIGRFAM: TIGR00268 family protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1703 Tresu_1704 Tresu_1704 Tresu_1704 1836654 1836872 + pseudogene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1704 Tresu_1705 Tresu_1705 Tresu_1705 1837038 1837949 + multi antimicrobial extrusion protein MatE COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: csh:Closa_1153 multi antimicrobial extrusion protein MatE~PFAM: Multi antimicrobial extrusion protein~SPTR: Multi antimicrobial extrusion protein MatE%3B~IMG reference gene:2504608651~PFAM: MatE gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1705 Tresu_1706 Tresu_1706 Tresu_1706 1838268 1840130 + methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089:IPR013163~KEGG: clj:CLJU_c14110 putative methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B Cache%2C type 2%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Putative methyl-accepting chemotaxis protein signaling domain protein%3B~IMG reference gene:2504608652~PFAM: HAMP domain%3B Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1706 Tresu_1707 Tresu_1707 Tresu_1707 1840337 1841470 + pseudogene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1707 Tresu_1708 Tresu_1708 Tresu_1708 1841553 1841759 + hypothetical protein IMG reference gene:2504608654 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1708 Tresu_1709 Tresu_1709 Tresu_1709 1841869 1842147 + hypothetical protein IMG reference gene:2504608655 gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1709 Tresu_1710 Tresu_1710 Tresu_1710 1842536 1843309 + Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: bre:BRE_2020 PF32 plasmid partition protein~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: PF32 plasmid partition protein%3B~IMG reference gene:2504608656~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1710 Tresu_1711 Tresu_1711 Tresu_1711 1843349 1844494 + hypothetical protein KEGG: dat:HRM2_38800 putative plasmid replication/partition related protein ParB~SPTR: Putative plasmid replication/partition related protein ParB%3B~IMG reference gene:2504608657 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1711 Tresu_1712 Tresu_1712 Tresu_1712 1844491 1844883 + hypothetical protein IMG reference gene:2504608658 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1712 Tresu_1713 Tresu_1713 Tresu_1713 1844888 1845232 + hypothetical protein IMG reference gene:2504608659 gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1713 Tresu_1714 Tresu_1714 Tresu_1714 1845247 1845396 + hypothetical protein IMG reference gene:2504608660 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1714 Tresu_1715 Tresu_1715 Tresu_1715 1845393 1845584 + hypothetical protein IMG reference gene:2504608661 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1715 Tresu_1716 Tresu_1716 Tresu_1716 1845673 1845813 + hypothetical protein IMG reference gene:2504608662 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1716 Tresu_1717 Tresu_1717 Tresu_1717 1845817 1846599 + hypothetical protein KEGG: sta:STHERM_c20940 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608663 gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1717 Tresu_1718 Tresu_1718 Tresu_1718 1846613 1846837 + hypothetical protein IMG reference gene:2504608664 gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1718 Tresu_1719 Tresu_1719 Tresu_1719 1846834 1847217 + hypothetical protein IMG reference gene:2504608665 gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1719 Tresu_1720 Tresu_1720 Tresu_1720 1847214 1847531 + hypothetical protein IMG reference gene:2504608666 gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1720 Tresu_1721 Tresu_1721 Tresu_1721 1847554 1847790 + hypothetical protein IMG reference gene:2504608667 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1721 Tresu_1722 Tresu_1722 Tresu_1722 1847824 1848060 + hypothetical protein IMG reference gene:2504608668 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1722 Tresu_1723 Tresu_1723 Tresu_1723 1848057 1849250 + hypothetical protein KEGG: ipo:Ilyop_1060 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608669 gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1723 Tresu_1724 Tresu_1724 Tresu_1724 1849247 1849483 + hypothetical protein IMG reference gene:2504608670 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1724 Tresu_1725 Tresu_1725 Tresu_1725 1849513 1849983 + single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR011344:IPR000424~KEGG: sul:SYO3AOP1_1690 single-strand binding protein~PFAM: Primosome PriB/single-strand DNA-binding~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: Single-strand DNA-binding~IMG reference gene:2504608671~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1725 Tresu_1726 Tresu_1726 Tresu_1726 1850252 1850605 + pseudogene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1726 Tresu_1727 Tresu_1727 Tresu_1727 1850602 1850835 + hypothetical protein IMG reference gene:2504608673 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1727 Tresu_1728 Tresu_1728 Tresu_1728 1850836 1851132 + hypothetical protein IMG reference gene:2504608674 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1728 Tresu_1729 Tresu_1729 Tresu_1729 1851146 1851511 + hypothetical protein IMG reference gene:2504608675 gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1729 Tresu_1730 Tresu_1730 Tresu_1730 1851550 1852407 + hypothetical protein KEGG: ame:724515 mushroom body defect~SPTR: DNA-directed RNA polymerase%2C omega subunit family protein%3B~IMG reference gene:2504608676 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1730 Tresu_1731 Tresu_1731 Tresu_1731 1852429 1852527 + hypothetical protein IMG reference gene:2504608677 gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1731 Tresu_1732 Tresu_1732 Tresu_1732 1852593 1853867 + hypothetical protein KEGG: mar:MAE_49360 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608678 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1732 Tresu_1733 Tresu_1733 Tresu_1733 1853855 1854349 + hypothetical protein KEGG: bfr:BF3623 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608679 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1733 Tresu_1734 Tresu_1734 Tresu_1734 1854346 1854438 + hypothetical protein IMG reference gene:2504608680 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1734 Tresu_1735 Tresu_1735 Tresu_1735 1854573 1857392 - hypothetical protein KEGG: pfd:PFDG_03181 conserved hypothetical protein~SPTR: Viral A-type inclusion protein%2C putative%3B~IMG reference gene:2504608681 gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1735 Tresu_1736 Tresu_1736 Tresu_1736 1857415 1866120 - SNF2-related protein InterPro IPR014001:IPR011639:IPR000330:IPR001650~KEGG: chu:CHU_1466 SNF2 family helicase~PFAM: SNF2-related%3B Restriction modification methylase Eco57I%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal~SPTR: Putative methylase%3B~IMG reference gene:2504608682~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain%3B Eco57I restriction endonuclease gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1736 Tresu_1737 Tresu_1737 Tresu_1737 1866160 1867092 - hypothetical protein IMG reference gene:2504608683 gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1737 Tresu_1738 Tresu_1738 Tresu_1738 1867097 1868206 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608684 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1738 Tresu_1739 Tresu_1739 Tresu_1739 1868317 1869063 - hypothetical protein IMG reference gene:2504608685 gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1739 Tresu_1740 Tresu_1740 Tresu_1740 1869288 1869749 + hypothetical protein IMG reference gene:2504608686 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1740 Tresu_1741 Tresu_1741 Tresu_1741 1869746 1870453 + hypothetical protein IMG reference gene:2504608687 gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1741 Tresu_1742 Tresu_1742 Tresu_1742 1870519 1871259 + hypothetical protein IMG reference gene:2504608688 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1742 Tresu_1743 Tresu_1743 Tresu_1743 1871288 1871545 + hypothetical protein IMG reference gene:2504608689 gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1743 Tresu_1744 Tresu_1744 Tresu_1744 1871751 1872641 + hypothetical protein IMG reference gene:2504608690 gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1744 Tresu_1745 Tresu_1745 Tresu_1745 1872703 1874658 - TrbL/VirB6 plasmid conjugal transfer protein COGs: COG3846 Type IV secretory pathway TrbL protein~InterPro IPR007688~KEGG: bam:Bamb_2010 conjugal transfer protein TrbL~PFAM: Conjugal transfer%2C TrbL/VirB6~SPTR: TrbL/VirB6 plasmid conjugal transfer protein%3B~IMG reference gene:2504608691~PFAM: TrbL/VirB6 plasmid conjugal transfer protein gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1745 Tresu_1746 Tresu_1746 Tresu_1746 1874679 1875644 - hypothetical protein IMG reference gene:2504608692 gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1746 Tresu_1747 Tresu_1747 Tresu_1747 1875671 1878244 - AAA ATPase COGs: COG3451 Type IV secretory pathway VirB4 protein~InterPro IPR003593~KEGG: paa:Paes_2349 conjugal transfer ATPase TrbE~SMART: ATPase%2C AAA+ type%2C core~SPTR: CagE TrbE VirB component of type IV transporter system%3B~IMG reference gene:2504608693~PFAM: Domain of unknown function DUF87%3B CagE%2C TrbE%2C VirB family%2C component of type IV transporter system~TIGRFAM: type IV secretion/conjugal transfer ATPase%2C VirB4 family gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1747 Tresu_1748 Tresu_1748 Tresu_1748 1878244 1878510 - type IV secretory pathway VirB3 family protein InterPro IPR007792~PFAM: Type IV secretion system%2C VirB3 / TrbD / AvhB~IMG reference gene:2504608694~PFAM: Type IV secretory pathway%2C VirB3-like protein gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1748 Tresu_1749 Tresu_1749 Tresu_1749 1878582 1879007 - hypothetical protein IMG reference gene:2504608695~PFAM: TrbC/VIRB2 family gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1749 Tresu_1750 Tresu_1750 Tresu_1750 1879169 1880146 - Sigma 54 interacting domain protein COGs: COG4962 Flp pilus assembly protein ATPase CpaF~InterPro IPR001482~KEGG: paa:Paes_2346 P-type conjugative transfer ATPase TrbB~PFAM: Type II secretion system protein E~SPTR: P-type conjugative transfer ATPase TrbB%3B~IMG reference gene:2504608696~PFAM: Type II/IV secretion system protein gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1750 Tresu_1751 Tresu_1751 Tresu_1751 1880143 1880583 - hypothetical protein IMG reference gene:2504608697 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1751 Tresu_1752 Tresu_1752 Tresu_1752 1880580 1881524 - hypothetical protein IMG reference gene:2504608698 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1752 Tresu_1753 Tresu_1753 Tresu_1753 1881537 1883684 - TRAG family protein COGs: COG3505 Type IV secretory pathway VirD4 protein~InterPro IPR003688~KEGG: cpb:Cphamn1_0686 conjugal transfer coupling protein TraG~PFAM: Ti-type conjugative transfer system%2C TraG-like~SPTR: TRAG family protein%3B~IMG reference gene:2504608699~PFAM: TraG/TraD family gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1753 Tresu_1754 Tresu_1754 Tresu_1754 1883862 1884101 + hypothetical protein IMG reference gene:2504608700 gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1754 Tresu_1755 Tresu_1755 Tresu_1755 1884258 1884575 + hypothetical protein IMG reference gene:2504608701 gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1755 Tresu_1756 Tresu_1756 Tresu_1756 1884694 1884927 + hypothetical protein IMG reference gene:2504608702 gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1756 Tresu_1757 Tresu_1757 Tresu_1757 1884924 1885568 + hypothetical protein IMG reference gene:2504608703 gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1757 Tresu_1758 Tresu_1758 Tresu_1758 1885624 1886331 + Sel1 domain protein repeat-containing protein InterPro IPR006597~KEGG: bmj:BMULJ_00119 SEL1 subfamily protein~PFAM: Sel1-like~SPTR: Sel1 repeat-containing protein%3B~IMG reference gene:2504608704~PFAM: Sel1 repeat gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1758 Tresu_1759 Tresu_1759 Tresu_1759 1886352 1887899 + hypothetical protein KEGG: ipo:Ilyop_1400 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608705 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1759 Tresu_1760 Tresu_1760 Tresu_1760 1888001 1893943 - Ig domain protein group 2 domain protein InterPro IPR003343~KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein~PFAM: Bacterial Ig-like%2C group 2~SMART: Bacterial Ig-like%2C group 2~SPTR: Ig domain protein group 2 domain protein%3B~IMG reference gene:2504608706~PFAM: Bacterial Ig-like domain (group 2) gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1760 Tresu_1761 Tresu_1761 Tresu_1761 1894075 1895472 - conjugation TrbI family protein COGs: COG2948 Type IV secretory pathway VirB10 protein~InterPro IPR005498~KEGG: ppr:PBPRB1607 hypothetical protein~PFAM: Type IV secretion system%2C VirB10 / TraB / TrbI~SPTR: Putative uncharacterized protein ATU6031%3B~IMG reference gene:2504608707~PFAM: Bacterial conjugation TrbI-like protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1761 Tresu_1762 Tresu_1762 Tresu_1762 1895462 1896550 - Conjugal transfer protein TrbG/VirB9/CagX COGs: COG3504 Type IV secretory pathway VirB9 protein~InterPro IPR010258~KEGG: paa:Paes_2354 P-type conjugative transfer protein TrbG~PFAM: Conjugal transfer%2C TrbG/VirB9/CagX~SPTR: P-type conjugative transfer protein TrbG%3B~IMG reference gene:2504608708~PFAM: Conjugal transfer protein~TIGRFAM: P-type conjugative transfer protein TrbG gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1762 Tresu_1763 Tresu_1763 Tresu_1763 1896547 1897257 - hypothetical protein COGs: COG3701 Type IV secretory pathway TrbF protein~KEGG: paa:Paes_1713 conjugal transfer protein~SPTR: Conjugal transfer protein%3B~IMG reference gene:2504608709~PFAM: Glycosyl hydrolase family 71%3B VirB8 protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1763 Tresu_1764 Tresu_1764 Tresu_1764 1897372 1898565 - hypothetical protein KEGG: mpo:Mpop_3083 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608710~PFAM: Relaxase/Mobilisation nuclease domain gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1764 Tresu_1765 Tresu_1765 Tresu_1765 1898581 1899063 - hypothetical protein IMG reference gene:2504608711 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1765 Tresu_1766 Tresu_1766 Tresu_1766 1899079 1899396 - hypothetical protein IMG reference gene:2504608712 gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1766 Tresu_1767 Tresu_1767 Tresu_1767 1899411 1899695 - C-5 cytosine-specific DNA methylase KEGG: rlt:Rleg2_2449 C-5 cytosine-specific DNA methylase~SPTR: Gp64%3B~IMG reference gene:2504608713~PFAM: C-5 cytosine-specific DNA methylase gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1767 Tresu_1768 Tresu_1768 Tresu_1768 1899705 1900004 - hypothetical protein IMG reference gene:2504608714 gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1768 Tresu_1769 Tresu_1769 Tresu_1769 1900128 1900235 - hypothetical protein IMG reference gene:2504608715 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1769 Tresu_1770 Tresu_1770 Tresu_1770 1900232 1900567 - hypothetical protein IMG reference gene:2504608716 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1770 Tresu_1771 Tresu_1771 Tresu_1771 1900564 1900770 - hypothetical protein IMG reference gene:2504608717 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1771 Tresu_1772 Tresu_1772 Tresu_1772 1900751 1901344 - hypothetical protein IMG reference gene:2504608718 gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1772 Tresu_1773 Tresu_1773 Tresu_1773 1901850 1903937 + DNA topoisomerase COGs: COG0550 Topoisomerase IA~InterPro IPR006171:IPR003601:IPR003602:IPR013497~KEGG: dat:HRM2_25900 TopB~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~SPTR: DNA topoisomerase%3B~IMG reference gene:2504608719~PFAM: Toprim domain%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase III%2C bacteria and conjugative plasmid gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1773 Tresu_1774 Tresu_1774 Tresu_1774 1904199 1905236 + Integrase catalytic region COGs: COG2826 Transposase and inactivated derivatives IS30 family~InterPro IPR001584~KEGG: cpr:CPR_0648 IS1470%2C transposase~PFAM: Integrase%2C catalytic core~SPTR: IS1470%2C transposase%3B~IMG reference gene:2504608720~PFAM: Integrase core domain gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1774 Tresu_1775 Tresu_1775 Tresu_1775 1905633 1907138 + Glycine hydroxymethyltransferase COGs: COG0112 Glycine/serine hydroxymethyltransferase~InterPro IPR001085~KEGG: tde:TDE2668 serine hydroxymethyltransferase~PFAM: Serine hydroxymethyltransferase~PRIAM: Glycine hydroxymethyltransferase~SPTR: Serine hydroxymethyltransferase%3B~IMG reference gene:2504608721~PFAM: Serine hydroxymethyltransferase gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1775 Tresu_1776 Tresu_1776 Tresu_1776 1907689 1909086 + hypothetical protein IMG reference gene:2504608722 gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1776 Tresu_1777 Tresu_1777 Tresu_1777 1909202 1909492 - addiction module toxin%2C RelE/StbE family COGs: COG3041 conserved hypothetical protein~InterPro IPR004386:IPR012753:IPR007712~KEGG: cdl:CDR20291_1759 addiction module toxin%2C rele/stbe family~PFAM: Plasmid stabilisation system~SPTR: Toxin-antitoxin system%2C toxin component%2C RelE family%3B~TIGRFAM: Addiction module toxin%2C RelE/StbE%3B Conserved hypothetical protein CHP00053~IMG reference gene:2504608723~PFAM: Plasmid stabilisation system protein~TIGRFAM: addiction module toxin component%2C YafQ family%3B addiction module toxin%2C RelE/StbE family gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1777 Tresu_1778 Tresu_1778 Tresu_1778 1909486 1909752 - addiction module antitoxin%2C RelB/DinJ family InterPro IPR007337~KEGG: dhd:Dhaf_3187 addiction module antitoxin%2C RelB/DinJ family~PFAM: RelB antitoxin~SPTR: Toxin-antitoxin system%2C antitoxin component%2C ribbon-helix-helix fold protein%3B~TIGRFAM: RelB antitoxin~IMG reference gene:2504608724~PFAM: RelB antitoxin~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1778 Tresu_1779 Tresu_1779 Tresu_1779 1909809 1910090 - hypothetical protein KEGG: ccb:Clocel_0298 GCN5-related N-acetyltransferase~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2504608725 gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1779 Tresu_1780 Tresu_1780 Tresu_1780 1910208 1911218 - hypothetical protein KEGG: tde:TDE1614 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608726 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1780 Tresu_1781 Tresu_1781 Tresu_1781 1911215 1911511 - hypothetical protein KEGG: tde:TDE1615 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504608727 gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1781 Tresu_1782 Tresu_1782 Tresu_1782 1911606 1911962 - PilT protein domain protein InterPro IPR002716~KEGG: gyc:GYMC61_1941 PilT protein domain protein~PFAM: PilT protein%2C N-terminal~SPTR: PilT protein domain protein%3B~IMG reference gene:2504608728~PFAM: PIN domain gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1782 Tresu_1783 Tresu_1783 Tresu_1783 1911965 1912180 - hypothetical protein IMG reference gene:2504608729 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1783 Tresu_1784 Tresu_1784 Tresu_1784 1912497 1913636 - Ankyrin InterPro IPR002110~KEGG: tva:TVAG_314770 ankyrin repeat protein~PFAM: Ankyrin repeat~SPTR: Ankyrin repeat protein%2C putative%3B~IMG reference gene:2504608730~PFAM: Ankyrin repeat gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1784 Tresu_1785 Tresu_1785 Tresu_1785 1913724 1914551 - hypothetical protein KEGG: mco:MCJ_006440 hypothetical protein~SPTR: Putative uncharacterized protein MCJ_006440%3B~IMG reference gene:2504608731 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1785 Tresu_1786 Tresu_1786 Tresu_1786 1914517 1914786 - hypothetical protein IMG reference gene:2504608732 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1786 Tresu_1787 Tresu_1787 Tresu_1787 1914922 1915344 - hypothetical protein IMG reference gene:2504608733 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1787 Tresu_1788 Tresu_1788 Tresu_1788 1915362 1916510 - hypothetical protein IMG reference gene:2504608734 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1788 Tresu_1789 Tresu_1789 Tresu_1789 1916598 1916888 - hypothetical protein IMG reference gene:2504608735 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1789 Tresu_1790 Tresu_1790 Tresu_1790 1917074 1917391 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE2445 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504608736~PFAM: Helix-turn-helix gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1790 Tresu_1791 Tresu_1791 Tresu_1791 1917411 1918073 - hypothetical protein KEGG: coc:Coch_0258 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608737 gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1791 Tresu_1792 Tresu_1792 Tresu_1792 1918263 1920647 + Beta-galactosidase COGs: COG3250 Beta-galactosidase/beta-glucuronidase~InterPro IPR006104:IPR006103~KEGG: cpf:CPF_0826 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 2%2C TIM barrel%3B Glycoside hydrolase%2C family 2%2C carbohydrate-binding~PRIAM: Beta-galactosidase~SPTR: Beta-galactosidase/beta-glucuronidase%3B~IMG reference gene:2504608738~PFAM: domain%3B Glycosyl hydrolases family 2%2C TIM barrel domain%3B Glycosyl hydrolases family 2%2C sugar binding domain gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1792 Tresu_1793 Tresu_1793 Tresu_1793 1920731 1921777 - Adenosine deaminase COGs: COG1816 Adenosine deaminase~HAMAP: Adenosine deaminase~InterPro IPR006330:IPR001365~KEGG: lic:LIC10459 adenosine deaminase~PFAM: Adenosine/AMP deaminase~PRIAM: Adenosine deaminase~SPTR: Adenosine deaminase%3B~TIGRFAM: Adenosine deaminase~IMG reference gene:2504608739~PFAM: Adenosine/AMP deaminase~TIGRFAM: adenosine deaminase gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1793 Tresu_1794 Tresu_1794 Tresu_1794 1922149 1922478 + RNP-1 like RNA-binding protein InterPro IPR000504~KEGG: ssm:Spirs_2330 RNP-1 like RNA-binding protein~PFAM: RNA recognition motif domain~SMART: RNA recognition motif domain~SPTR: RNP-1 like RNA-binding protein%3B~IMG reference gene:2504608740~PFAM: RNA recognition motif. (a.k.a. RRM%2C RBD%2C or RNP domain) gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1794 Tresu_1795 Tresu_1795 Tresu_1795 1922485 1923381 + hypothetical protein KEGG: tde:TDE2640 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608741~PFAM: Peptidase family M28 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1795 Tresu_1796 Tresu_1796 Tresu_1796 1923378 1924277 - protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: fma:FMG_1268 putative mambrane protein~PFAM: Drug/metabolite transporter~SPTR: Permeases of the drug/metabolite transporter (DMT) superfamily%3B~IMG reference gene:2504608742~PFAM: EamA-like transporter family gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1796 Tresu_1797 Tresu_1797 Tresu_1797 1924368 1925321 + pseudouridine synthase%2C RluA family COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006225:IPR002942:IPR006145~KEGG: cni:Calni_0311 pseudouridine synthase%2C rlua family~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~SPTR: Pseudouridine synthase%3B~TIGRFAM: Pseudouridine synthase%2C RluC/RluD~IMG reference gene:2504608743~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1797 Tresu_1798 Tresu_1798 Tresu_1798 1925295 1926251 - ribosome biogenesis GTPase RsgA COGs: COG1162 GTPase~HAMAP: Ribosome biogenesis GTPase RsgA%2C putative~InterPro IPR004881~KEGG: tde:TDE1449 GTPase YjeQ~PFAM: Ribosome biogenesis GTPase RsgA%2C putative~SPTR: GTPase YjeQ%3B~TIGRFAM: Ribosome biogenesis GTPase RsgA%2C putative~IMG reference gene:2504608744~PFAM: Protein of unknown function%2C DUF258~TIGRFAM: ribosome small subunit-dependent GTPase A gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1798 Tresu_1799 Tresu_1799 Tresu_1799 1926618 1928651 - translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR004540:IPR005225:IPR005517:IPR000640:IPR 000795:IPR004161~KEGG: tde:TDE0285 elongation factor G~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SMART: Translation elongation factor EFG/EF2%2C C-terminal%3B Translation elongation factor EFG/EF2%2C domain IV~SPTR: Elongation factor G 2%3B~TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~IMG reference gene:2504608746~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1799 Tresu_1800 Tresu_1800 Tresu_1800 1928836 1929861 + response regulator receiver protein COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR001789~KEGG: ele:Elen_1344 diguanylate cyclase and metal dependent phosphohydrolase~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain~SPTR: Response regulator/phosphatase%3B~IMG reference gene:2504608747~PFAM: Response regulator receiver domain gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1800 Tresu_1801 Tresu_1801 Tresu_1801 1929903 1931891 + NAD+ synthetase COGs: COG0171 NAD synthase~InterPro IPR003694:IPR003010:IPR022310~KEGG: cth:Cthe_0325 NAD synthetase~PFAM: NAD/GMP synthase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~PRIAM: NAD(+) synthase (glutamine-hydrolyzing)~SPTR: Putative uncharacterized protein%3B~TIGRFAM: NAD synthase~IMG reference gene:2504608748~PFAM: NAD synthase%3B Carbon-nitrogen hydrolase~TIGRFAM: NAD+ synthetase gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1801 Tresu_1802 Tresu_1802 Tresu_1802 1931885 1932727 + protein of unknown function DUF519 COGs: COG2961 Protein involved in catabolism of external DNA~InterPro IPR007473~KEGG: pat:Patl_2039 hypothetical protein~PFAM: Protein of unknown function DUF519~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608749~PFAM: Protein of unknown function (DUF519) gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1802 Tresu_1803 Tresu_1803 Tresu_1803 1932730 1933515 - hypothetical protein KEGG: tde:TDE2077 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608750 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1803 Tresu_1804 Tresu_1804 Tresu_1804 1933541 1934215 - TPR domain-containing protein KEGG: tde:TDE2078 TPR domain-containing protein~SPTR: TPR domain protein%3B~IMG reference gene:2504608751 gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1804 Tresu_1805 Tresu_1805 Tresu_1805 1934276 1935823 - transcriptional regulator%2C NifA subfamily%2C Fis Family COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains~InterPro IPR003018:IPR003593:IPR002078:IPR002197~KEGG: tde:TDE2079 sigma-54 dependent transcriptional regulator%2C putative~PFAM: RNA polymerase sigma factor 54%2C interaction%3B GAF%3B Helix-turn-helix%2C Fis-type~SMART: GAF%3B ATPase%2C AAA+ type%2C core~SPTR: Sigma-54 dependent transcriptional regulator%2C putative%3B~IMG reference gene:2504608752~PFAM: GAF domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1805 Tresu_1806 Tresu_1806 Tresu_1806 1935836 1938181 - Cytidylate kinase COGs: COG0539 Ribosomal protein S1~HAMAP: Cytidylate kinase~InterProIPR003136:IPR018032:IPR022967:IPR011994:IPR 003029~KEGG: tde:TDE2080 cytidylate kinase/ribosomal protein S1~PFAM: Cytidylate kinase domain%3B Ribosomal protein S1%2C RNA-binding domain~SMART: RNA-binding domain%2C S1~SPTR: Cytidylate kinase/ribosomal protein S1%3B~TIGRFAM: Ribosomal S1 synthesis/modification protein%3B Cytidylate kinase~IMG reference gene:2504608753~PFAM: Cytidylate kinase%3B S1 RNA binding domain~TIGRFAM: ribosomal protein S1%3B cytidylate kinase gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1806 Tresu_1807 Tresu_1807 Tresu_1807 1938195 1938938 - RNA-binding S4 domain protein COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR002942:IPR006145~KEGG: tde:TDE0875 ribosomal large subunit pseudouridine synthase B~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SMART: RNA-binding S4~SPTR: Ribosomal large subunit pseudouridine synthase B%3B~IMG reference gene:2504608754~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1807 Tresu_1808 Tresu_1808 Tresu_1808 1938928 1939587 - chromosome segregation and condensation protein%2C ScpB COGs: COG1386 transcriptional regulator protein containing the HTH domain~InterPro IPR005234~KEGG: tde:TDE0874 transcriptional regulator%2C putative~PFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~SPTR: Segregation and condensation protein B%3B~TIGRFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~IMG reference gene:2504608755~PFAM: Putative transcriptional regulators (Ypuh-like)~TIGRFAM: segregation and condensation protein B gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1808 Tresu_1809 Tresu_1809 Tresu_1809 1939563 1940318 - Segregation and condensation protein A COGs: COG1354 conserved hypothetical protein~HAMAP: Prokaryotic chromosome segregation/condensation protein ScpA~InterPro IPR003768~KEGG: tde:TDE0873 hypothetical protein~PFAM: Prokaryotic chromosome segregation/condensation protein ScpA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608756~PFAM: ScpA/B protein gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1809 Tresu_1810 Tresu_1810 Tresu_1810 1940341 1940847 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase~InterPro IPR000550~KEGG: bse:Bsel_0075 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase~PFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase%3B~TIGRFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~IMG reference gene:2504608757~PFAM: 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)~TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1810 Tresu_1811 Tresu_1811 Tresu_1811 1940853 1942121 - Protein recA COGs: COG0468 RecA/RadA recombinase~HAMAP: DNA recombination and repair protein RecA~InterPro IPR013765:IPR003593~KEGG: tde:TDE0872 recombinase A~PFAM: DNA recombination and repair protein RecA~SMART: ATPase%2C AAA+ type%2C core~SPTR: Protein recA%3B~TIGRFAM: DNA recombination and repair protein RecA~IMG reference gene:2504608758~PFAM: recA bacterial DNA recombination protein~TIGRFAM: protein RecA gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1811 Tresu_1812 Tresu_1812 Tresu_1812 1942506 1943450 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: tde:TDE2269 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608759~PFAM: Formylglycine-generating sulfatase enzyme gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1812 Tresu_1813 Tresu_1813 Tresu_1813 1943753 1943923 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: tde:TDE1736 ferredoxin%2C 2(4Fe-4S)~PFAM: 4Fe-4S binding domain~SPTR: 4Fe-4S binding domain protein%3B~IMG reference gene:2504608760~PFAM: 4Fe-4S binding domain gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1813 Tresu_1814 Tresu_1814 Tresu_1814 1943986 1944861 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047~KEGG: tde:TDE1738 M23/M37 peptidase domain-containing protein~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SPTR: M23/M37 peptidase domain protein%3B~IMG reference gene:2504608761~PFAM: Peptidase family M23%3B LysM domain gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1814 Tresu_1815 Tresu_1815 Tresu_1815 1944922 1945926 + hypothetical protein KEGG: sta:STHERM_c07170 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608762 gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1815 Tresu_1816 Tresu_1816 Tresu_1816 1946207 1946506 + Trp repressor InterPro IPR000831~KEGG: ssm:Spirs_1491 Trp repressor~PFAM: Trp repressor~SPTR: Trp repressor%3B~IMG reference gene:2504608763~PFAM: Trp repressor protein~TIGRFAM: trp operon repressor%2C proteobacterial gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1816 Tresu_1817 Tresu_1817 Tresu_1817 1946521 1947234 - Inosine monophosphate cyclohydrolase COGs: COG3363 IMP cyclohydrolase~InterPro IPR020600~KEGG: ere:EUBREC_1566 hypothetical protein~PFAM: Inosine monophosphate cyclohydrolase-like~SPTR: IMP cyclohydrolase-like protein%3B~IMG reference gene:2504608764~PFAM: IMP cyclohydrolase-like protein gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1817 Tresu_1818 Tresu_1818 Tresu_1818 1947426 1948943 + PpiC-type peptidyl-prolyl cis-trans isomerase InterPro IPR000297~KEGG: tde:TDE2526 hypothetical protein~PFAM: Peptidyl-prolyl cis-trans isomerase%2C PpiC-type~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608765~PFAM: PPIC-type PPIASE domain gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1818 Tresu_1819 Tresu_1819 Tresu_1819 1948945 1950573 + protein of unknown function DUF115 InterPro IPR002826~KEGG: tde:TDE2525 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608766~PFAM: Protein of unknown function DUF115 gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1819 Tresu_1820 Tresu_1820 Tresu_1820 1950577 1952382 - GTP-binding protein lepA COGs: COG0481 Membrane GTPase LepA~HAMAP: GTP-binding protein LepA~InterProIPR005225:IPR006297:IPR000795:IPR004161:IPR 000640:IPR013842~KEGG: tde:TDE1893 GTP-binding protein LepA~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal%3B GTP-binding protein LepA%2C C-terminal~SPTR: Elongation factor 4%3B~TIGRFAM: GTP-binding protein LepA%3B Small GTP-binding protein~IMG reference gene:2504608767~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B GTP-binding protein LepA C-terminus~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein domain gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1820 Tresu_1821 Tresu_1821 Tresu_1821 1952414 1954078 - peptidase S1 and S6 chymotrypsin/Hap COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001478:IPR001254~KEGG: tde:TDE1343 trypsin domain/PDZ domain-containing protein~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF~SPTR: Trypsin domain/PDZ domain protein%3B~IMG reference gene:2504608768~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF) gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1821 Tresu_1822 Tresu_1822 Tresu_1822 1954062 1956179 - hypothetical protein KEGG: tde:TDE1342 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608769 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1822 Tresu_1823 Tresu_1823 Tresu_1823 1956176 1957540 - tRNA(Ile)-lysidine synthase COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~HAMAP: Lysidine-tRNA(Ile) synthetase~InterPro IPR012795:IPR012094:IPR011063~KEGG: tde:TDE1341 hypothetical protein~PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase~SPTR: tRNA(Ile)-lysidine synthase%3B~TIGRFAM: Lysidine-tRNA(Ile) synthetase%2C N-terminal~IMG reference gene:2504608770~PFAM: PP-loop family~TIGRFAM: tRNA(Ile)-lysidine synthetase%2C N-terminal domain gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1823 Tresu_1824 Tresu_1824 Tresu_1824 1957643 1958197 - 50S ribosomal protein L25 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc)~HAMAP: Ribosomal protein L25%2C long-form~InterPro IPR001021:IPR020055~KEGG: tde:TDE1340 50S ribosomal protein L25/general stress protein Ctc~PFAM: Ribosomal protein L25%2C short-form~SPTR: 50S ribosomal protein L25%3B~TIGRFAM: Ribosomal protein L25%2C long-form~IMG reference gene:2504608771~PFAM: Ribosomal L25p family~TIGRFAM: ribosomal protein L25%2C Ctc-form gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1824 Tresu_1825 Tresu_1825 Tresu_1825 1958330 1958608 - septation protein spoVG COGs: COG2088 Uncharacterized protein involved in the regulation of septum location~HAMAP: septation protein spoVG~InterPro IPR007170~KEGG: ssm:Spirs_1813 SpoVG family protein~PFAM: Sporulation stage V%2C protein G~SPTR: SpoVG family protein%3B~IMG reference gene:2504608773~PFAM: SpoVG gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1825 Tresu_1826 Tresu_1826 Tresu_1826 1958705 1959592 - 4-diphosphocytidyl-2-C-methyl-D-erythritolkinase COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase~HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~InterPro IPR004424:IPR006204:IPR013750~KEGG: tde:TDE1338 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~PFAM: GHMP kinase%3B GHMP kinase%2C C-terminal~SPTR: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase%3B~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~IMG reference gene:2504608774~PFAM: GHMP kinases C terminal%3B GHMP kinases N terminal domain~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1826 Tresu_1827 Tresu_1827 Tresu_1827 1959705 1960836 - pseudogene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1827 Tresu_1828 Tresu_1828 Tresu_1828 1961048 1961341 + hypothetical protein KEGG: brm:Bmur_1557 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608776 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1828 Tresu_1829 Tresu_1829 Tresu_1829 1961433 1962650 - hypothetical protein COGs: COG1896 hydrolase of HD superfamily~KEGG: tde:TDE1299 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608777 gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1829 Tresu_1830 Tresu_1830 Tresu_1830 1962650 1963450 - hypothetical protein KEGG: tde:TDE1300 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608778 gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1830 Tresu_1831 Tresu_1831 Tresu_1831 1963450 1965147 - DNA repair protein RecN COGs: COG0497 ATPase involved in DNA repair~InterPro IPR004604:IPR003395~KEGG: tde:TDE1301 DNA repair protein RecN~PFAM: RecF/RecN/SMC~SPTR: DNA repair protein RecN%3B~TIGRFAM: DNA recombination/repair protein RecN~IMG reference gene:2504608779~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: DNA repair protein RecN gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1831 Tresu_1832 Tresu_1832 Tresu_1832 1965140 1965994 - inorganic polyphosphate/ATP-NAD kinase COGs: COG0061 sugar kinase~HAMAP: Inorganic polyphosphate/ATP-NAD kinase%2C predicted~InterPro IPR002504~KEGG: tde:TDE1591 inorganic polyphosphate/ATP-NAD kinase%2C putative~PFAM: Inorganic polyphosphate/ATP-NAD kinase%2C predicted~SPTR: Probable inorganic polyphosphate/ATP-NAD kinase%3B~IMG reference gene:2504608780~PFAM: ATP-NAD kinase gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1832 Tresu_1833 Tresu_1833 Tresu_1833 1965991 1967067 - DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: tde:TDE1590 aminotransferase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Aminotransferase%2C DegT/DnrJ/EryC1/StrS family%3B~IMG reference gene:2504608781~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1833 Tresu_1834 Tresu_1834 Tresu_1834 1967181 1967672 - CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: tde:TDE1589 purine-binding chemotaxis protein~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: Purine-binding chemotaxis protein%3B~IMG reference gene:2504608782~PFAM: CheW-like domain gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1834 Tresu_1835 Tresu_1835 Tresu_1835 1967742 1968503 - phosphoribosyltransferase COGs: COG1040 amidophosphoribosyltransferase~InterPro IPR000836~KEGG: tde:TDE0972 ComF-related protein~PFAM: Phosphoribosyltransferase~SPTR: ComF-related protein%3B~IMG reference gene:2504608783~PFAM: Phosphoribosyl transferase domain~TIGRFAM: comF family protein gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1835 Tresu_1836 Tresu_1836 Tresu_1836 1968556 1971147 - DNA mismatch repair protein mutS COGs: COG0249 Mismatch repair ATPase (MutS family)~HAMAP: DNA mismatch repair protein MutS%2C type 1~InterProIPR005748:IPR007696:IPR000432:IPR007695:IPR 007860:IPR007861~KEGG: tde:TDE2603 DNA mismatch repair protein MutS~PFAM: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core%3B DNA mismatch repair protein MutS-like%2C N-terminal%3B DNA mismatch repair protein MutS%2C connector%3B DNA mismatch repair protein MutS%2C clamp~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core~SPTR: DNA mismatch repair protein mutS%3B~TIGRFAM: DNA mismatch repair protein MutS%2C type 1~IMG reference gene:2504608784~PFAM: MutS family domain IV%3B MutS domain II%3B MutS domain V%3B MutS domain I%3B MutS domain III~TIGRFAM: DNA mismatch repair protein MutS gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1836 Tresu_1837 Tresu_1837 Tresu_1837 1971215 1971748 - outer membrane chaperone Skp (OmpH) COGs: COG2825 Outer membrane protein~InterPro IPR005632~KEGG: tde:TDE2602 outer membrane protein%2C putative~PFAM: Outer membrane chaperone Skp (OmpH)~SMART: Outer membrane chaperone Skp (OmpH)~SPTR: Cationic outer membrane protein%3B~IMG reference gene:2504608785~PFAM: Outer membrane protein (OmpH-like) gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1837 Tresu_1838 Tresu_1838 Tresu_1838 1971787 1974264 - outer membrane protein assembly complex%2C YaeT protein COGs: COG4775 Outer membrane protein/protective antigen OMA87~InterPro IPR016474:IPR010827:IPR000184~KEGG: tde:TDE2601 surface antigen%2C putative~PFAM: Bacterial surface antigen (D15)%3B Surface antigen variable number~SPTR: Outer membrane protein 88%3B~TIGRFAM: Outer membrane assembly protein%2C YaeT~IMG reference gene:2504608786~PFAM: Surface antigen variable number repeat%3B Surface antigen~TIGRFAM: outer membrane protein assembly complex%2C YaeT protein gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1838 Tresu_1839 Tresu_1839 Tresu_1839 1974286 1978686 - protein of unknown function DUF490 COGs: COG2911 conserved hypothetical protein~InterPro IPR007452~KEGG: tde:TDE2600 hypothetical protein~PFAM: Protein of unknown function DUF490~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608787~PFAM: Family of unknown function (DUF490) gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1839 Tresu_1840 Tresu_1840 Tresu_1840 1978763 1979407 + Thymidylate kinase COGs: COG0125 Thymidylate kinase~HAMAP: Thymidylate kinase~InterPro IPR018094~KEGG: ssm:Spirs_2020 thymidylate kinase~PFAM: Thymidylate kinase~PRIAM: dTMP kinase~SPTR: Thymidylate kinase%3B~TIGRFAM: Thymidylate kinase~IMG reference gene:2504608788~PFAM: Thymidylate kinase~TIGRFAM: thymidylate kinase gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1840 Tresu_1841 Tresu_1841 Tresu_1841 1979440 1980069 + hypothetical protein KEGG: tde:TDE2598 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608789 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1841 Tresu_1842 Tresu_1842 Tresu_1842 1980121 1981569 + Fibronectin-binding A domain protein COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP~InterPro IPR008616:IPR008532~KEGG: tde:TDE1579 fibronectin/fibrinogen-binding protein%2C internal deletion~PFAM: Fibronectin-binding A%2C N-terminal%3B Domain of unknown function DUF814~SPTR: Fibronectin/fibrinogen-binding protein%2C internal deletion%3B~IMG reference gene:2504608790~PFAM: Domain of unknown function (DUF814)%3B Fibronectin-binding protein A N-terminus (FbpA) gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1842 Tresu_1843 Tresu_1843 Tresu_1843 1981591 1982463 + Methylenetetrahydrofolate reductase (NAD(P)H) COGs: COG0685 5 10-methylenetetrahydrofolate reductase~InterPro IPR003171~KEGG: csh:Closa_2454 5%2C10-methylenetetrahydrofolate reductase~PFAM: Methylenetetrahydrofolate reductase~PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H)~SPTR: Methylenetetrahydrofolate reductase%3B~IMG reference gene:2504608791~PFAM: Methylenetetrahydrofolate reductase~TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase%2C prokaryotic form gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1843 Tresu_1844 Tresu_1844 Tresu_1844 1982479 1985052 + Methionine synthase COGs: COG1410 Methionine synthase I cobalamin-binding domain~InterPro IPR003726:IPR000489:IPR003759:IPR006158~KEGG: cbf:CLI_1701 putative 5-methyltetrahydrofolate--homocysteine methyltransferase~PFAM: Cobalamin (vitamin B12)-binding%3B Homocysteine S-methyltransferase%3B Pterin-binding%3B Methionine synthase%2C cobalamin (vitamin B12)-binding module%2C cap~PRIAM: Methionine synthase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608792~PFAM: Pterin binding enzyme%3B B12 binding domain%3B Homocysteine S-methyltransferase~TIGRFAM: methylmalonyl-CoA mutase C-terminal domain gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1844 Tresu_1845 Tresu_1845 Tresu_1845 1985049 1985993 + hypothetical protein KEGG: ssm:Spirs_0543 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608793 gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1845 Tresu_1846 Tresu_1846 Tresu_1846 1986005 1986796 - Mannose-6-phosphate isomerase COGs: COG1482 Phosphomannose isomerase~InterPro IPR001250~KEGG: bld:BLi02107 hypothetical protein~PFAM: Mannose-6-phosphate isomerase%2C type I~PRIAM: Mannose-6-phosphate isomerase~SPTR: Phosphomannose isomerase type I%3B~IMG reference gene:2504608794~PFAM: Phosphomannose isomerase type I gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1846 Tresu_1847 Tresu_1847 Tresu_1847 1986797 1987705 - hypothetical protein KEGG: tde:TDE0603 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608795 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1847 Tresu_1848 Tresu_1848 Tresu_1848 1987891 1988592 - Purine nucleoside phosphorylase deoD-type COGs: COG0813 Purine-nucleoside phosphorylase~HAMAP: Purine nucleoside phosphorylase~InterPro IPR004402:IPR000845~KEGG: tde:TDE0463 purine nucleoside phosphorylase~PFAM: Nucleoside phosphorylase domain~PRIAM: Purine-nucleoside phosphorylase~SPTR: Purine nucleoside phosphorylase%3B~TIGRFAM: Purine nucleoside phosphorylase~IMG reference gene:2504608796~PFAM: Phosphorylase superfamily~TIGRFAM: purine-nucleoside phosphorylase%2C family 1 (deoD) gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1848 Tresu_1849 Tresu_1849 Tresu_1849 1988659 1989195 - Adenine phosphoribosyltransferase COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein~HAMAP: Adenine phosphoribosyl transferase~InterPro IPR005764:IPR000836~KEGG: tde:TDE1684 adenine phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~SPTR: Adenine phosphoribosyltransferase%3B~TIGRFAM: Adenine phosphoribosyl transferase~IMG reference gene:2504608797~PFAM: Phosphoribosyl transferase domain~TIGRFAM: adenine phosphoribosyltransferase gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1849 Tresu_1850 Tresu_1850 Tresu_1850 1989844 1990320 + SH3 domain protein InterPro IPR003646~KEGG: tde:TDE0409 hypothetical protein~SMART: SH3-like domain%2C bacterial~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608798 gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1850 Tresu_1851 Tresu_1851 Tresu_1851 1990320 1991261 + peptidase M48 Ste24p COGs: COG4783 Putative Zn-dependent protease contains TPR repeats~InterPro IPR001915~KEGG: tde:TDE0410 M48 family peptidase~PFAM: Peptidase M48~SPTR: Peptidase%2C M48 family%3B~IMG reference gene:2504608799~PFAM: Peptidase family M48 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1851 Tresu_1852 Tresu_1852 Tresu_1852 1991264 1993405 + adenylate/guanylate cyclase with Chase sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR007890~KEGG: tde:TDE0411 adenylate/guanylate cyclase catalytic domain-containing protein~PFAM: CHASE2%3B Adenylyl cyclase class-3/4/guanylyl cyclase~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate/guanylate cyclase catalytic domain protein%3B~IMG reference gene:2504608800~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B CHASE2 domain gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1852 Tresu_1853 Tresu_1853 Tresu_1853 1993435 1994328 - Prephenate dehydrogenase COGs: COG0287 Prephenate dehydrogenase~InterPro IPR003099~KEGG: elm:ELI_0131 prephenate dehydrogenase~PFAM: Prephenate dehydrogenase~PRIAM: Prephenate dehydrogenase~SPTR: Prephenate dehydrogenase%3B~IMG reference gene:2504608801~PFAM: Prephenate dehydrogenase gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1853 Tresu_1854 Tresu_1854 Tresu_1854 1994392 1995426 - phospho-2-dehydro-3-deoxyheptonate aldolase COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006268:IPR006218~KEGG: elm:ELI_0130 3-deoxy-7-phosphoheptulonate synthase~PFAM: DAHP synthetase I/KDSA~PRIAM: 3-deoxy-7-phosphoheptulonate synthase~SPTR: 3-deoxy-7-phosphoheptulonate synthase%3B~TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C subtype 2~IMG reference gene:2504608802~PFAM: DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1854 Tresu_1855 Tresu_1855 Tresu_1855 1995694 1995921 - 4-oxalocrotonate tautomerase InterPro IPR004370~KEGG: bpb:bpr_I2734 tautomerase family protein~PFAM: 4-oxalocrotonate tautomerase~SPTR: Tautomerase family protein%3B~IMG reference gene:2504608803~PFAM: Tautomerase enzyme gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1855 Tresu_1856 Tresu_1856 Tresu_1856 1995923 1997209 - O-acetylhomoserine/O-acetylserine sulfhydrylase COGs: COG2873 O-acetylhomoserine sulfhydrylase~InterPro IPR006235:IPR000277~KEGG: eel:EUBELI_20605 O-acetylhomoserine (thiol)-lyase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme~PRIAM: Cysteine synthase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~IMG reference gene:2504608804~PFAM: Cys/Met metabolism PLP-dependent enzyme~TIGRFAM: OAH/OAS sulfhydrylase gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1856 Tresu_1857 Tresu_1857 Tresu_1857 1997244 1999187 - ribonuclease II COGs: COG0557 Exoribonuclease R~InterPro IPR001900~KEGG: tde:TDE1371 RNB-like family protein~PFAM: Ribonuclease II/R~SMART: Ribonuclease II/R~SPTR: Exoribonuclease II%3B~IMG reference gene:2504608805~PFAM: RNB domain gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1857 Tresu_1858 Tresu_1858 Tresu_1858 1999339 2000544 - Glycerol-3-phosphate-transporting ATPase COGs: COG3839 ABC-type sugar transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611~KEGG: sta:STHERM_c01980 sugar ABC transporter~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~PRIAM: Glycerol-3-phosphate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Multiple sugar-binding transport ATP-binding protein MsmK%3B~IMG reference gene:2504608806~PFAM: ABC transporter%3B TOBE domain gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1858 Tresu_1859 Tresu_1859 Tresu_1859 2000637 2001167 - pseudogene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1859 Tresu_1860 Tresu_1860 Tresu_1860 2001374 2003467 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: bbu:BB0596 methyl-accepting chemotaxis protein (mcp-2)~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504608808~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1860 Tresu_1861 Tresu_1861 Tresu_1861 2003537 2004325 + protein of unknown function DUF306 Meta and HslJ InterPro IPR005184~KEGG: mla:Mlab_0424 hypothetical protein~PFAM: Domain of unknown function DUF306%2C Meta/HslJ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608809~PFAM: META domain gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1861 Tresu_1862 Tresu_1862 Tresu_1862 2004456 2005604 + 3-dehydroquinate synthase COGs: COG0337 3-dehydroquinate synthetase~InterPro IPR002658~KEGG: tde:TDE0104 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase AroB~PRIAM: 3-dehydroquinate synthase~SPTR: 3-dehydroquinate synthase%3B~IMG reference gene:2504608810~PFAM: 3-dehydroquinate synthase~TIGRFAM: 3-dehydroquinate synthase gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1862 Tresu_1863 Tresu_1863 Tresu_1863 2005601 2006776 + Cysteine desulfurase COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase~InterPro IPR000192~KEGG: tde:TDE0103 aminotransferase%2C class-V~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Cysteine desulfurase~SPTR: Aminotransferase%2C class-V%3B~IMG reference gene:2504608811~PFAM: Aminotransferase class-V gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1863 Tresu_1864 Tresu_1864 Tresu_1864 2006883 2007323 + PUR-alpha/beta/gamma DNA/RNA-binding protein InterPro IPR006628~KEGG: tde:TDE0865 hypothetical protein~SMART: PUR-alpha/beta/gamma%2C DNA/RNA-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608812~PFAM: PurA ssDNA and RNA-binding protein%3B Protein of unknown function (DUF3276) gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1864 Tresu_1865 Tresu_1865 Tresu_1865 2007320 2007919 - Ribonuclease H COGs: COG0164 Ribonuclease HII~InterPro IPR001352~KEGG: tde:TDE1547 ribonuclease HII~PFAM: Ribonuclease HII/HIII~PRIAM: Ribonuclease H~SPTR: Ribonuclease HII%3B~IMG reference gene:2504608813~PFAM: Ribonuclease HII gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1865 Tresu_1866 Tresu_1866 Tresu_1866 2007925 2010000 - hypothetical protein KEGG: tde:TDE1546 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608814 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1866 Tresu_1867 Tresu_1867 Tresu_1867 2010006 2010614 - phosphoribosyl transferase domain protein COGs: COG2236 phosphoribosyltransferase~KEGG: ssm:Spirs_2435 phosphoribosyl transferase domain protein~SPTR: Phosphoribosyl transferase domain protein%3B~IMG reference gene:2504608815~PFAM: Phosphoribosyl transferase domain gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1867 Tresu_1868 Tresu_1868 Tresu_1868 2010696 2011820 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR013105~KEGG: tde:TDE2594 hypothetical protein~PFAM: Tetratricopeptide TPR2~SPTR: Tetratricopeptide repeat domain protein%3B~IMG reference gene:2504608816 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1868 Tresu_1869 Tresu_1869 Tresu_1869 2011821 2013038 - hypothetical protein KEGG: tde:TDE2595 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608817 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1869 Tresu_1870 Tresu_1870 Tresu_1870 2013038 2013937 - hypothetical protein KEGG: tde:TDE2596 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608818 gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1870 Tresu_1871 Tresu_1871 Tresu_1871 2013928 2014563 - ribulose-phosphate 3-epimerase COGs: COG0036 Pentose-5-phosphate-3-epimerase~InterPro IPR000056~KEGG: tde:TDE2597 ribulose-phosphate 3-epimerase~PFAM: Ribulose-phosphate 3-epimerase~PRIAM: Ribulose-phosphate 3-epimerase~SPTR: Ribulose-phosphate 3-epimerase%3B~TIGRFAM: Ribulose-phosphate 3-epimerase~IMG reference gene:2504608819~PFAM: Ribulose-phosphate 3 epimerase family~TIGRFAM: ribulose-phosphate 3-epimerase gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1871 Tresu_1872 Tresu_1872 Tresu_1872 2014766 2015704 + TPR domain-containing protein KEGG: tde:TDE2696 TPR domain-containing protein~SPTR: TPR domain protein%3B~IMG reference gene:2504608820 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1872 Tresu_1873 Tresu_1873 Tresu_1873 2015745 2018489 + Transcription elongation factor%2C GreA/GreB%2C N-terminal COGs: COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA~InterPro IPR022691:IPR001437~KEGG: tde:TDE2695 transcript cleavage factor/unknown domain fusion protein~PFAM: Transcription elongation factor%2C GreA/GreB%2C N-terminal%3B Transcription elongation factor%2C GreA/GreB%2C C-terminal~SPTR: Transcription elongation factor%3B~IMG reference gene:2504608821~PFAM: domain%3B Transcription elongation factor%2C GreA/GreB%2C C-term~TIGRFAM: transcription elongation factor GreA gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1873 Tresu_1874 Tresu_1874 Tresu_1874 2018513 2019448 + beta-lactamase domain protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~InterPro IPR001279~KEGG: tna:CTN_0053 beta-lactamase domain protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608822~PFAM: Metallo-beta-lactamase superfamily gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1874 Tresu_1875 Tresu_1875 Tresu_1875 2019445 2020155 + Deoxyribose-phosphate aldolase COGs: COG0274 Deoxyribose-phosphate aldolase~HAMAP: Deoxyribose-phosphate aldolase%2C type 1~InterPro IPR011343:IPR022979:IPR002915~KEGG: clj:CLJU_c18130 deoxyribose-phosphate aldolase~PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase~PRIAM: Deoxyribose-phosphate aldolase~SPTR: Deoxyribose-phosphate aldolase%3B~TIGRFAM: Deoxyribose-phosphate aldolase~IMG reference gene:2504608823~PFAM: DeoC/LacD family aldolase~TIGRFAM: deoxyribose-phosphate aldolase gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1875 Tresu_1876 Tresu_1876 Tresu_1876 2020159 2020509 - regulatory protein ArsR InterPro IPR001845~KEGG: cbe:Cbei_3513 regulatory protein%2C ArsR~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR~SPTR: Transcriptional regulator%2C ArsR family%3B~IMG reference gene:2504608824~PFAM: Bacterial regulatory protein%2C arsR family gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1876 Tresu_1877 Tresu_1877 Tresu_1877 2020698 2023643 + hypothetical protein COGs: COG1033 exporter of the RND superfamily protein~KEGG: tde:TDE2704 hypothetical protein~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504608825~PFAM: MMPL family gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1877 Tresu_1878 Tresu_1878 Tresu_1878 2023687 2024466 + hypothetical protein KEGG: ssm:Spirs_3723 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608826 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1878 Tresu_1879 Tresu_1879 Tresu_1879 2024492 2025949 + hypothetical protein KEGG: ssm:Spirs_3729 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608827 gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1879 Tresu_1880 Tresu_1880 Tresu_1880 2025996 2027444 - RNA modification enzyme%2C MiaB family COGs: COG0621 2-methylthioadenine synthetase~InterPro IPR005839:IPR006638:IPR013848:IPR007197~KEGG: tde:TDE1886 MiaB-like tRNA modifying enzyme~PFAM: Radical SAM%3B Methylthiotransferase%2C N-terminal~SMART: Elongator protein 3/MiaB/NifB~SPTR: MiaB-like tRNA modifying enzyme%3B~TIGRFAM: Methylthiotransferase~IMG reference gene:2504608828~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: MiaB-like tRNA modifying enzyme%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1880 Tresu_1881 Tresu_1881 Tresu_1881 2027455 2028084 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tde:TDE1887 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504608829~PFAM: Tetratricopeptide repeat gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1881 Tresu_1882 Tresu_1882 Tresu_1882 2028116 2028478 - protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE1888 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608830~PFAM: Protein of unknown function%2C DUF583 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1882 Tresu_1883 Tresu_1883 Tresu_1883 2028573 2030672 - DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR014001:IPR001650:IPR011545~KEGG: tde:TDE2109 DEAD-box ATP dependent DNA helicase~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: ATP-dependent RNA helicase%2C DEAD/DEAH box family%3B~IMG reference gene:2504608831~PFAM: Helicase conserved C-terminal domain%3B DbpA RNA binding domain%3B DEAD/DEAH box helicase gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1883 Tresu_1884 Tresu_1884 Tresu_1884 2030988 2032400 + hypothetical protein IMG reference gene:2504608832 gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1884 Tresu_1885 Tresu_1885 Tresu_1885 2032474 2033607 - pseudogene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1885 Tresu_1886 Tresu_1886 Tresu_1886 2033832 2035928 + translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR005517:IPR000640:IPR004540:IPR005225:IPR 000795:IPR004161~KEGG: tde:TDE1049 elongation factor G~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SMART: Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SPTR: Elongation factor G 1%3B~TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~IMG reference gene:2504608834~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1886 Tresu_1887 Tresu_1887 Tresu_1887 2036130 2036813 + hypothetical protein KEGG: tde:TDE1050 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608835~PFAM: KaiC gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1887 Tresu_1888 Tresu_1888 Tresu_1888 2037176 2037337 + hypothetical protein IMG reference gene:2504608836 gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1888 Tresu_1889 Tresu_1889 Tresu_1889 2037340 2037963 - hypothetical protein KEGG: clj:CLJU_c17680 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608837 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1889 Tresu_1890 Tresu_1890 Tresu_1890 2038103 2040031 - pseudogene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1890 Tresu_1891 Tresu_1891 Tresu_1891 2040126 2040344 - hypothetical protein KEGG: ere:EUBREC_2969 hypothetical protein~SPTR: Cadmium-exporting ATPase%3B~IMG reference gene:2504608839~PFAM: Heavy-metal-associated domain gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1891 Tresu_1892 Tresu_1892 Tresu_1892 2040510 2041244 + transcriptional regulator%2C ArsR family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR001845:IPR018060:IPR000005~KEGG: cbi:CLJ_B1642 AraC family regulatory protein~PFAM: HTH transcriptional regulator%2C ArsR%3B HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain%3B HTH transcriptional regulator%2C ArsR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608840~PFAM: Bacterial regulatory protein%2C arsR family%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1892 Tresu_1893 Tresu_1893 Tresu_1893 2041252 2041668 - hypothetical protein KEGG: csh:Closa_0700 NUDIX hydrolase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608841~PFAM: Hydrolase of X-linked nucleoside diphosphate N terminal gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1893 Tresu_1894 Tresu_1894 Tresu_1894 2041665 2042117 - GCN5-related N-acetyltransferase COGs: COG0456 Acetyltransferase~InterPro IPR000182~KEGG: tde:TDE0035 acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2504608842~PFAM: Acetyltransferase (GNAT) family gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1894 Tresu_1895 Tresu_1895 Tresu_1895 2042118 2042588 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: cac:CA_C3256 acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608843~PFAM: Acetyltransferase (GNAT) family gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1895 Tresu_1896 Tresu_1896 Tresu_1896 2042902 2043753 - hypothetical protein IMG reference gene:2504608844 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1896 Tresu_1897 Tresu_1897 Tresu_1897 2043840 2044316 + pseudogene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1897 Tresu_1898 Tresu_1898 Tresu_1898 2044357 2045178 + protein of unknown function DUF218 COGs: COG1434 conserved hypothetical protein~InterPro IPR003848~KEGG: cth:Cthe_1772 hypothetical protein~PFAM: Domain of unknown function DUF218~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608846~PFAM: DUF218 domain gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1898 Tresu_1899 Tresu_1899 Tresu_1899 2045245 2045997 + hypothetical protein IMG reference gene:2504608847 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1899 Tresu_1900 Tresu_1900 Tresu_1900 2046021 2046746 + hypothetical protein KEGG: bpb:bpr_I0849 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608848~PFAM: Uncharacterized BCR%2C YitT family COG1284 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1900 Tresu_1901 Tresu_1901 Tresu_1901 2046959 2048086 - Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680~KEGG: eel:EUBELI_00346 hypothetical protein~PFAM: Divalent ion symporter~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608849~PFAM: Citrate transporter gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1901 Tresu_1902 Tresu_1902 Tresu_1902 2048160 2048621 - transcription activator effector binding protein COGs: COG3708 conserved hypothetical protein~InterPro IPR010499~KEGG: cbk:CLL_A3385 transcriptional regulator%2C AraC family~PFAM: Bacterial transcription activator%2C effector binding~SMART: Bacterial transcription activator%2C effector binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608850~PFAM: Bacterial transcription activator%2C effector binding domain gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1902 Tresu_1903 Tresu_1903 Tresu_1903 2048730 2049632 + hypothetical protein COGs: COG4571 Outer membrane protease~KEGG: kpe:KPK_A0239 outer membrane protease~SPTR: Protease VII%3B~IMG reference gene:2504608851~PFAM: Omptin family gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1903 Tresu_1904 Tresu_1904 Tresu_1904 2049642 2050580 + transcription regulator COGs: COG2378 transcriptional regulator protein~InterPro IPR013196~KEGG: cac:CA_C3494 transcription regulator~SPTR: Transcription regulator%2C YOBV B.subtilis homolog%3B~IMG reference gene:2504608852~PFAM: HTH domain gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1904 Tresu_1905 Tresu_1905 Tresu_1905 2050648 2051457 + peptidase M48 Ste24p COGs: COG4783 Putative Zn-dependent protease contains TPR repeats~InterPro IPR001915~KEGG: ccv:CCV52592_0655 peptidase M48%2C Ste24p~PFAM: Peptidase M48~SPTR: Peptidase M48%2C Ste24p%3B~IMG reference gene:2504608853~PFAM: Peptidase family M48 gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1905 Tresu_1906 Tresu_1906 Tresu_1906 2051659 2052556 + pseudogene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1906 Tresu_1907 Tresu_1907 Tresu_1907 2052899 2053177 + regulatory protein TetR InterPro IPR001647~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~IMG reference gene:2504608855~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1907 Tresu_1908 Tresu_1908 Tresu_1908 2053313 2053993 - hypothetical protein KEGG: brm:Bmur_0448 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608856 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1908 Tresu_1909 Tresu_1909 Tresu_1909 2054006 2055490 - pseudogene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1909 Tresu_1910 Tresu_1910 Tresu_1910 2055514 2056452 - hypothetical protein COGs: COG2768 Uncharacterized Fe-S center protein~KEGG: cce:Ccel_0906 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608858 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1910 Tresu_1911 Tresu_1911 Tresu_1911 2056578 2057009 - hypothetical protein COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain~KEGG: mmp:MMP0486 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608859~PFAM: Cupin domain gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1911 Tresu_1912 Tresu_1912 Tresu_1912 2057426 2059045 - Recombinase COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: ere:EUBREC_3578 site-specific recombinase~PFAM: Recombinase%3B Resolvase%2C N-terminal~SMART: Resolvase%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608860~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1912 Tresu_1913 Tresu_1913 Tresu_1913 2059157 2059345 - hypothetical protein KEGG: ere:EUBREC_3579 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608861 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1913 Tresu_1914 Tresu_1914 Tresu_1914 2059360 2060199 - hypothetical protein COGs: COG1484 DNA replication protein~KEGG: ere:EUBREC_3580 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608862~PFAM: IstB-like ATP binding protein gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1914 Tresu_1915 Tresu_1915 Tresu_1915 2060196 2060990 - replication initiator A domain protein InterPro IPR010724~KEGG: ere:EUBREC_3581 hypothetical protein~PFAM: Replication initiator A%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608863~PFAM: Replication initiator protein A (RepA) N-terminus gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1915 Tresu_1916 Tresu_1916 Tresu_1916 2061063 2061449 - hypothetical protein KEGG: ere:EUBREC_3582 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608864 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1916 Tresu_1917 Tresu_1917 Tresu_1917 2061439 2063106 - Relaxase/mobilization nuclease family protein InterPro IPR005094~KEGG: ere:EUBREC_3583 hypothetical protein~PFAM: Endonuclease relaxase%2C MobA/VirD2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608865~PFAM: Relaxase/Mobilisation nuclease domain gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1917 Tresu_1918 Tresu_1918 Tresu_1918 2063078 2063479 - pseudogene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1918 Tresu_1919 Tresu_1919 Tresu_1919 2064123 2064314 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608867 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1919 Tresu_1920 Tresu_1920 Tresu_1920 2064737 2065030 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608868 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1920 Tresu_1921 Tresu_1921 Tresu_1921 2065406 2066626 + H+ Antiporter protein InterPro IPR004751:IPR011701~KEGG: ckr:CKR_2228 hypothetical protein~PFAM: Major facilitator superfamily MFS-1~SPTR: H+ Antiporter protein%3B~TIGRFAM: Drug antiporter protein~IMG reference gene:2504608869~PFAM: Major Facilitator Superfamily~TIGRFAM: H+ Antiporter protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1921 Tresu_1922 Tresu_1922 Tresu_1922 2066707 2067507 - helix-turn-helix domain protein InterPro IPR001387~KEGG: elm:ELI_1005 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Helix-turn-helix%3B~IMG reference gene:2504608870~PFAM: Helix-turn-helix gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1922 Tresu_1923 Tresu_1923 Tresu_1923 2067586 2067849 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608871 gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1923 Tresu_1924 Tresu_1924 Tresu_1924 2068078 2068491 + hypothetical protein KEGG: elm:ELI_1003 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608872 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1924 Tresu_1925 Tresu_1925 Tresu_1925 2068531 2069082 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608873 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1925 Tresu_1926 Tresu_1926 Tresu_1926 2069172 2070116 + plasmid recombination protein InterPro IPR001668~KEGG: elm:ELI_1000 plasmid recombination protein~PFAM: Plasmid recombination enzyme~SPTR: Plasmid recombination enzyme%3B~IMG reference gene:2504608874~PFAM: Plasmid recombination enzyme gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1926 Tresu_1927 Tresu_1927 Tresu_1927 2070100 2070312 + hypothetical protein KEGG: ckl:CKL_2861 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608875 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1927 Tresu_1928 Tresu_1928 Tresu_1928 2070407 2071918 + Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: ere:EUBREC_2739 site-specific recombinases%2C DNA invertase Pin-like protein~PFAM: Resolvase%2C N-terminal%3B Recombinase~SMART: Resolvase%2C N-terminal~SPTR: Site-specific recombinases%2C DNA invertase Pin homologs%3B~IMG reference gene:2504608876~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1928 Tresu_1929 Tresu_1929 Tresu_1929 2072070 2072267 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608877 gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1929 Tresu_1930 Tresu_1930 Tresu_1930 2072317 2072883 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608878 gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1930 Tresu_1931 Tresu_1931 Tresu_1931 2072852 2073250 - pseudogene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1931 Tresu_1932 Tresu_1932 Tresu_1932 2073403 2074596 - integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR004191:IPR002104~KEGG: cdf:CD1091 integrase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C Tn916-type%2C N-terminal DNA binding~SPTR: Transposase%3B~IMG reference gene:2504608880~PFAM: DNA binding domain of tn916 integrase%3B Phage integrase family gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1932 Tresu_1933 Tresu_1933 Tresu_1933 2074677 2074880 - Excisionase from transposon Tn916 InterPro IPR015122~KEGG: cdf:CD0356 excisionase~PFAM: Excisionase from transposon Tn916~SPTR: Xis%3B~IMG reference gene:2504608881~PFAM: Excisionase from transposon Tn916~TIGRFAM: DNA binding domain%2C excisionase family gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1933 Tresu_1934 Tresu_1934 Tresu_1934 2075332 2075592 - conjugative transposon protein KEGG: cdf:CD1092A conjugative transposon protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608882 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1934 Tresu_1935 Tresu_1935 Tresu_1935 2075573 2076127 - RNA polymerase sigma factor%2C sigma-70 family InterPro IPR014284:IPR013249~KEGG: cdf:CD1094 conjugative transposon protein~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2~SPTR: Sigma-70%2C region 4 subfamily%3B~TIGRFAM: RNA polymerase sigma-70~manually curated~IMG reference gene:2504608883~PFAM: Sigma-70%2C region 4~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1935 Tresu_1936 Tresu_1936 Tresu_1936 2076541 2077530 - radical SAM enzyme%2C Cfr family COGs: COG0820 Fe-S-cluster redox enzyme~InterPro IPR004383:IPR007197~KEGG: cdl:CDR20291_1774 hypothetical protein~PFAM: Radical SAM~SPTR: Radical SAM enzyme%2C Cfr family%3B~TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN%3B~IMG reference gene:2504608884~PFAM: Radical SAM superfamily~TIGRFAM: 23S rRNA m2A2503 methyltransferase gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1936 Tresu_1937 Tresu_1937 Tresu_1937 2077591 2078016 - Methyltransferase type 11 InterPro IPR013216~KEGG: hau:Haur_0170 type 11 methyltransferase~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608885~PFAM: Methyltransferase domain gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1937 Tresu_1938 Tresu_1938 Tresu_1938 2078248 2078703 - helix-turn-helix domain protein InterPro IPR001387~KEGG: ljf:FI9785_1788 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Helix-turn-helix type 3%3B~IMG reference gene:2504608886~PFAM: Helix-turn-helix gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1938 Tresu_1939 Tresu_1939 Tresu_1939 2078785 2080704 - small GTP-binding protein COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR005517:IPR005225:IPR000795:IPR004161:IPR 000640~KEGG: bll:BLJ_1245 translation elongation factor G~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SMART: Translation elongation factor EFG/EF2%2C domain IV~SPTR: Translation elongation factor G%3B~TIGRFAM: Small GTP-binding protein~IMG reference gene:2504608887~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: small GTP-binding protein domain gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1939 Tresu_1940 Tresu_1940 Tresu_1940 2081067 2081588 - hypothetical protein KEGG: bbe:BBR47_39740 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608888~PFAM: Chloramphenicol phosphotransferase-like protein gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1940 Tresu_1941 Tresu_1941 Tresu_1941 2081851 2082918 - hypothetical protein COGs: COG1073 Hydrolase of the alpha/beta superfamily~KEGG: sga:GALLO_0889 hypothetical protein~SPTR: Hydrolases of the alpha/beta superfamily%3B~IMG reference gene:2504608889~PFAM: BAAT / Acyl-CoA thioester hydrolase C terminal gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1941 Tresu_1942 Tresu_1942 Tresu_1942 2083074 2083955 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: bmq:BMQ_3743 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608890~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1942 Tresu_1943 Tresu_1943 Tresu_1943 2084191 2084547 - Carboxymuconolactone decarboxylase COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit~InterPro IPR003779~KEGG: sga:GALLO_0912 gamma-carboxymuconolactone decarboxylase~PFAM: Carboxymuconolactone decarboxylase~SPTR: Putative gamma-carboxymuconolactone decarboxylase%3B~IMG reference gene:2504608891~PFAM: Carboxymuconolactone decarboxylase family gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1943 Tresu_1944 Tresu_1944 Tresu_1944 2084632 2085192 - flavodoxin KEGG: hhe:HH1031 flavodoxin~SPTR: Flavodoxin%3B~IMG reference gene:2504608892 gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1944 Tresu_1945 Tresu_1945 Tresu_1945 2085299 2085733 - hypothetical protein COGs: COG4925 conserved hypothetical protein~KEGG: dsa:Desal_3565 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608893~PFAM: Domain of unknown function (DUF369) gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1945 Tresu_1946 Tresu_1946 Tresu_1946 2085768 2087537 - 1-deoxy-D-xylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~InterPro IPR005475:IPR005476~KEGG: ccb:Clocel_3398 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase~SMART: Transketolase-like%2C pyrimidine-binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608894~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1946 Tresu_1947 Tresu_1947 Tresu_1947 2087755 2088474 + regulatory protein TetR InterPro IPR001647~KEGG: shi:Shel_18430 transcriptional regulator%2C TetR family~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%3B~IMG reference gene:2504608895~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1947 Tresu_1948 Tresu_1948 Tresu_1948 2088498 2089268 + hypothetical protein KEGG: bpb:bpr_I1000 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608896 gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1948 Tresu_1949 Tresu_1949 Tresu_1949 2089394 2090263 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG0348 Polyferredoxin~InterPro IPR001450~KEGG: cdl:CDR20291_1357 putative iron-sulfur cluster-binding protein~PFAM: 4Fe-4S binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608897 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1949 Tresu_1950 Tresu_1950 Tresu_1950 2090279 2090431 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608898 gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1950 Tresu_1951 Tresu_1951 Tresu_1951 2090428 2090943 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen InterPro IPR000866~KEGG: cdl:CDR20291_1801 hypothetical protein~PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608899~PFAM: AhpC/TSA family gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1951 Tresu_1952 Tresu_1952 Tresu_1952 2091159 2091956 + pseudogene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1952 Tresu_1953 Tresu_1953 Tresu_1953 2091981 2092433 + NUDIX hydrolase InterPro IPR000086~KEGG: pru:PRU_0662 mutator MutT protein~PFAM: NUDIX hydrolase domain~SPTR: Mutator mutT protein%3B~IMG reference gene:2504608901~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1953 Tresu_1954 Tresu_1954 Tresu_1954 2092591 2093376 - Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: elm:ELI_2116 methyltransferase type 11~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608902~PFAM: Methyltransferase domain gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1954 Tresu_1955 Tresu_1955 Tresu_1955 2093463 2093901 - pseudogene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1955 Tresu_1956 Tresu_1956 Tresu_1956 2093987 2095051 - histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594~KEGG: bld:BLi04065 YdfH~PFAM: ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain~SPTR: Putative transmembrane protein%3B~IMG reference gene:2504608904~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1956 Tresu_1957 Tresu_1957 Tresu_1957 2095096 2095713 + hypothetical protein KEGG: ssm:Spirs_0021 hypothetical protein~SPTR: Signal transduction histidine kinase%3B~IMG reference gene:2504608905 gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1957 Tresu_1958 Tresu_1958 Tresu_1958 2096127 2096735 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR000792:IPR001789~KEGG: fri:FraEuI1c_2962 two component transcriptional regulator%2C LuxR family~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SMART: Transcription regulator LuxR%2C C-terminal~SPTR: Two component transcriptional regulator%2C LuxR family%3B~IMG reference gene:2504608906~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1958 Tresu_1959 Tresu_1959 Tresu_1959 2096897 2097238 + hypothetical protein IMG reference gene:2504608907 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1959 Tresu_1960 Tresu_1960 Tresu_1960 2097254 2098351 + hypothetical protein IMG reference gene:2504608908 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1960 Tresu_1961 Tresu_1961 Tresu_1961 2098508 2098840 + hypothetical protein IMG reference gene:2504608909 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1961 Tresu_1962 Tresu_1962 Tresu_1962 2098967 2099179 - addiction module toxin%2C RelE/StbE family InterPro IPR012753~KEGG: fsu:Fisuc_0169 addiction module toxin%2C RelE/StbE family~SPTR: Toxin-antitoxin system%2C toxin component%2C RelE family%3B~TIGRFAM: Addiction module toxin%2C RelE/StbE~IMG reference gene:2504608910~TIGRFAM: addiction module toxin%2C RelE/StbE family gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1962 Tresu_1963 Tresu_1963 Tresu_1963 2099291 2099866 - SCP-like extracellular InterPro IPR014044~PFAM: CAP domain~IMG reference gene:2504608911~PFAM: Cysteine-rich secretory protein family gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1963 Tresu_1964 Tresu_1964 Tresu_1964 2100569 2101456 - pseudogene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1964 Tresu_1965 Tresu_1965 Tresu_1965 2101922 2102566 + two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: vex:VEA_000091 transcriptional regulatory protein UhpA~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SPTR: DNA-binding response regulator%2C LuxR family%3B~IMG reference gene:2504608913~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1965 Tresu_1966 Tresu_1966 Tresu_1966 2102563 2103153 + hypothetical protein KEGG: ssm:Spirs_0521 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608914 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1966 Tresu_1967 Tresu_1967 Tresu_1967 2103150 2103971 + histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR011712:IPR003594~KEGG: dhd:Dhaf_1231 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain~SPTR: Histidine kinase%3B~IMG reference gene:2504608915~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1967 Tresu_1968 Tresu_1968 Tresu_1968 2103984 2104508 + hypothetical protein IMG reference gene:2504608916 gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1968 Tresu_1969 Tresu_1969 Tresu_1969 2104596 2105996 + hypothetical protein COGs: COG1672 ATPase (AAA+ superfamily)~InterPro IPR011579:IPR004256~KEGG: mpe:MYPE5260 hypothetical protein~SPTR: Archaeal ATPase family protein%3B~IMG reference gene:2504608917~PFAM: Archaeal ATPase%3B Archaea bacterial proteins of unknown function gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1969 Tresu_1970 Tresu_1970 Tresu_1970 2106177 2107226 + pseudogene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1970 Tresu_1971 Tresu_1971 Tresu_1971 2107336 2107491 + hypothetical protein IMG reference gene:2504608919 gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1971 Tresu_1972 Tresu_1972 Tresu_1972 2107564 2107761 + hypothetical protein IMG reference gene:2504608920 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1972 Tresu_1973 Tresu_1973 Tresu_1973 2107771 2109090 + hypothetical protein KEGG: bpb:bpr_I0318 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608921 gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1973 Tresu_1974 Tresu_1974 Tresu_1974 2109092 2110564 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR006638:IPR007197~KEGG: ddd:Dda3937_03601 radical SAM domain heme biosynthesis protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain heme biosynthesis protein%3B~IMG reference gene:2504608922~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM additional 4Fe4S-binding domain gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1974 Tresu_1975 Tresu_1975 Tresu_1975 2110680 2110883 + hypothetical protein IMG reference gene:2504608923 gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1975 Tresu_1976 Tresu_1976 Tresu_1976 2111010 2111498 + pseudogene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1976 Tresu_1977 Tresu_1977 Tresu_1977 2111614 2111976 + hypothetical protein IMG reference gene:2504608925 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1977 Tresu_1978 Tresu_1978 Tresu_1978 2111990 2112655 + hypothetical protein IMG reference gene:2504608926 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1978 Tresu_1979 Tresu_1979 Tresu_1979 2112674 2113058 - pseudogene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1979 Tresu_1980 Tresu_1980 Tresu_1980 2113311 2113898 - mobile mystery protein B COGs: COG2184 Protein involved in cell division~InterPro IPR013436:IPR003812~KEGG: rpe:RPE_3410 mobile mystery protein B~PFAM: Filamentation induced by cAMP/death on curing-related~SPTR: Mobile mystery protein B%3B~TIGRFAM: Mobile mystery protein B~IMG reference gene:2504608928~PFAM: Fic/DOC family~TIGRFAM: mobile mystery protein B gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1980 Tresu_1981 Tresu_1981 Tresu_1981 2113905 2114345 - mobile mystery protein A InterPro IPR001387:IPR013435~KEGG: gsu:GSU1390 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~TIGRFAM: Mobile mystery protein A~IMG reference gene:2504608929~PFAM: Helix-turn-helix~TIGRFAM: mobile mystery protein A gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1981 Tresu_1982 Tresu_1982 Tresu_1982 2114584 2114853 - pseudogene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1982 Tresu_1983 Tresu_1983 Tresu_1983 2114905 2115738 - hypothetical protein KEGG: pgn:PGN_1209 probable flavodoxin~SPTR: Putative flavodoxin%3B~IMG reference gene:2504608931 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1983 Tresu_1984 Tresu_1984 Tresu_1984 2115760 2116302 - Cupin 2 conserved barrel domain protein COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain~InterPro IPR013096~KEGG: elm:ELI_2297 hypothetical protein~PFAM: Cupin 2%2C conserved barrel~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608932~PFAM: Cupin domain gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1984 Tresu_1985 Tresu_1985 Tresu_1985 2116302 2117015 - Carboxymuconolactone decarboxylase InterPro IPR003779~KEGG: pca:Pcar_1079 carboxymuconolactone decarboxylase family protein~PFAM: Carboxymuconolactone decarboxylase~SPTR: Carboxymuconolactone decarboxylase family protein%3B~IMG reference gene:2504608933~PFAM: Carboxymuconolactone decarboxylase family gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1985 Tresu_1986 Tresu_1986 Tresu_1986 2117017 2118093 - hypothetical protein KEGG: dvm:DvMF_2944 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608934 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1986 Tresu_1987 Tresu_1987 Tresu_1987 2118389 2119702 + DNA-cytosine methyltransferase COGs: COG0270 Site-specific DNA methylase~InterPro IPR001525~KEGG: nmn:NMCC_1162 DNA (cytosine-5-)-methyltransferase~PFAM: C-5 cytosine methyltransferase~SPTR: Cytosine-specific methyltransferase%3B~TIGRFAM: C-5 cytosine methyltransferase~IMG reference gene:2504608935~PFAM: C-5 cytosine-specific DNA methylase~TIGRFAM: DNA-methyltransferase (dcm) gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1987 Tresu_1988 Tresu_1988 Tresu_1988 2119683 2120408 + Type II site-specific deoxyribonuclease InterPro IPR019064~KEGG: nme:NMB1032 type II restriction enzyme NlaIV~PFAM: Restriction endonuclease%2C type II%2C NgoBV~PRIAM: Type II site-specific deoxyribonuclease~SPTR: Type II restriction enzyme NlaIV%3B~IMG reference gene:2504608936~PFAM: NgoBV restriction endonuclease gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1988 Tresu_1989 Tresu_1989 Tresu_1989 2120491 2121342 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: afn:Acfer_0523 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~SPTR: Transcriptional regulator%2C LysR family%3B~IMG reference gene:2504608937~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1989 Tresu_1990 Tresu_1990 Tresu_1990 2121382 2121862 - pseudogene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1990 Tresu_1991 Tresu_1991 Tresu_1991 2122140 2123270 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504608939~PFAM: Transposase DDE domain gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1991 Tresu_1992 Tresu_1992 Tresu_1992 2123492 2123746 - hypothetical protein IMG reference gene:2504608940 gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1992 Tresu_1993 Tresu_1993 Tresu_1993 2123826 2125955 - Sulphatase-modifying factor protein InterPro IPR005532~KEGG: cce:Ccel_1865 protein of unknown function DUF323~PFAM: Sulphatase-modifying factor~SPTR: XylR (Modular protein)%3B~IMG reference gene:2504608941 gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1993 Tresu_1994 Tresu_1994 Tresu_1994 2125980 2126174 - hypothetical protein IMG reference gene:2504608942 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1994 Tresu_1995 Tresu_1995 Tresu_1995 2126602 2127732 + transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504608943~PFAM: Transposase DDE domain gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1995 Tresu_1996 Tresu_1996 Tresu_1996 2128341 2128640 + hypothetical protein IMG reference gene:2504608944 gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1996 Tresu_1997 Tresu_1997 Tresu_1997 2128895 2129386 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608945 gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1997 Tresu_1998 Tresu_1998 Tresu_1998 2129562 2130152 + hypothetical protein IMG reference gene:2504608946 gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1998 Tresu_1999 Tresu_1999 Tresu_1999 2130166 2130984 + putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594~KEGG: chu:CHU_1265 two-component sensor histidine kinase~PFAM: ATPase-like%2C ATP-binding domain~SPTR: Two-component sensor histidine kinase%3B~IMG reference gene:2504608947~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_1999 Tresu_2000 Tresu_2000 Tresu_2000 2130988 2131611 + pseudogene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2000 Tresu_2001 Tresu_2001 Tresu_2001 2131687 2133039 - hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: bbp:BBPR_0085 hypothetical protein~SPTR: Putative ATPase%3B~IMG reference gene:2504608949 gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2001 Tresu_2002 Tresu_2002 Tresu_2002 2133359 2134585 + hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: cst:CLOST_0209 hypothetical protein~SPTR: AAA+ superfamily ATPase%3B~IMG reference gene:2504608950 gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2002 Tresu_2003 Tresu_2003 Tresu_2003 2134750 2135301 + Lipocalin family protein COGs: COG3040 Bacterial lipocalin~InterPro IPR013208~KEGG: fba:FIC_01802 outer membrane lipoprotein (lipocalin)~PFAM: Lipocalin-like~SPTR: Lipocalin%3B~IMG reference gene:2504608951~PFAM: Lipocalin-like domain gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2003 Tresu_2004 Tresu_2004 Tresu_2004 2135456 2138491 + hypothetical protein COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits~KEGG: eel:EUBELI_01746 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608952~PFAM: Protein of unknown function (DUF2726) gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2004 Tresu_2005 Tresu_2005 Tresu_2005 2138543 2138773 + hypothetical protein IMG reference gene:2504608953 gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2005 Tresu_2006 Tresu_2006 Tresu_2006 2138877 2139047 - hypothetical protein SPTR: Superfamily I DNA and RNA helicases%3B~IMG reference gene:2504608954~PFAM: Topoisomerase DNA binding C4 zinc finger gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2006 Tresu_2007 Tresu_2007 Tresu_2007 2139221 2140885 + phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent COGs: COG0696 Phosphoglyceromutase~InterPro IPR005995:IPR011258:IPR006124~KEGG: sta:STHERM_c04770 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase~PFAM: BPG-independent PGAM%2C N-terminal%3B Metalloenzyme~PRIAM: Phosphoglycerate mutase~SPTR: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B~TIGRFAM: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~IMG reference gene:2504608955~PFAM: Metalloenzyme superfamily%3B BPG-independent PGAM N-terminus (iPGM_N)~TIGRFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2007 Tresu_2008 Tresu_2008 Tresu_2008 2140958 2142268 - 6-aminohexanoate-dimer hydrolase COGs: COG1680 Beta-lactamase class C and other penicillin binding protein~InterPro IPR001466~KEGG: dac:Daci_3787 6-aminohexanoate-dimer hydrolase~PFAM: Beta-lactamase-related~PRIAM: 6-aminohexanoate-dimer hydrolase~SPTR: 6-aminohexanoate-dimer hydrolase%3B~IMG reference gene:2504608956~PFAM: Beta-lactamase gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2008 Tresu_2009 Tresu_2009 Tresu_2009 2142521 2143264 - hypothetical protein KEGG: tde:TDE0944 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608957 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2009 Tresu_2010 Tresu_2010 Tresu_2010 2143544 2146630 - glycoside hydrolase family 2 TIM barrel COGs: COG3250 Beta-galactosidase/beta-glucuronidase~InterPro IPR006104:IPR006103:IPR004199~KEGG: rca:Rcas_2493 beta-galactosidase~PFAM: Glycoside hydrolase%2C family 2%2C TIM barrel%3B Glycoside hydrolase%2C family 2%2C carbohydrate-binding%3B Glycoside hydrolase%2C family 42%2C domain 5~SPTR: Glycoside hydrolase family 2 TIM barrel%3B~IMG reference gene:2504608958~PFAM: domain%3B Glycosyl hydrolases family 2%2C TIM barrel domain%3B Beta galactosidase small chain%3B Glycosyl hydrolases family 2%2C sugar binding domain gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2010 Tresu_2011 Tresu_2011 Tresu_2011 2146837 2148117 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: cpy:Cphy_3590 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504608959~PFAM: Bacterial extracellular solute-binding protein gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2011 Tresu_2012 Tresu_2012 Tresu_2012 2148197 2149081 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: gyc:GYMC61_0532 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608960~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2012 Tresu_2013 Tresu_2013 Tresu_2013 2149078 2149893 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cpy:Cphy_3588 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504608961~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2013 Tresu_2014 Tresu_2014 Tresu_2014 2149971 2150231 - hypothetical protein KEGG: ere:EUBREC_2791 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608962~TIGRFAM: uncharacterized protein TIGR03905 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2014 Tresu_2015 Tresu_2015 Tresu_2015 2150239 2151042 - Phosphonate-transporting ATPase COGs: COG1101 ABC-type uncharacterized transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: bhy:BHWA1_00398 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504608963~PFAM: ABC transporter gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2015 Tresu_2016 Tresu_2016 Tresu_2016 2151035 2151997 - ABC-type transporter%2C integral membrane subunit COGs: COG4120 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: bhy:BHWA1_00397 hypothetical protein~PFAM: ABC transporter permease~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504608964~PFAM: Branched-chain amino acid transport system / permease component gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2016 Tresu_2017 Tresu_2017 Tresu_2017 2152056 2153012 - ABC transporter substrate binding protein COGs: COG2984 ABC-type uncharacterized transport system periplasmic component~InterPro IPR007487~KEGG: brm:Bmur_2584 protein of unknown function DUF534~PFAM: ABC transporter substrate binding protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608965~PFAM: ABC transporter substrate binding protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2017 Tresu_2018 Tresu_2018 Tresu_2018 2153331 2154380 + extracellular solute-binding protein family 1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein~InterPro IPR006059~KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter%2C periplasmic binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Spermidine/putrescine ABC transporter%2C periplasmic binding protein%3B~IMG reference gene:2504608966~PFAM: Bacterial extracellular solute-binding protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2018 Tresu_2019 Tresu_2019 Tresu_2019 2154659 2155537 + phosphate ABC transporter%2C phosphate-binding protein%2C putative COGs: COG0226 ABC-type phosphate transport system periplasmic component~KEGG: sak:SAK_1927 phosphate ABC transporter%2C phosphate-binding protein%2C putative~SPTR: Phosphate ABC transporter%2C phosphate-binding protein%3B~IMG reference gene:2504608967 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2019 Tresu_2020 Tresu_2020 Tresu_2020 2155619 2156470 + phosphate ABC transporter%2C inner membrane subunit PstC COGs: COG0573 ABC-type phosphate transport system permease component~InterPro IPR011864:IPR000515~KEGG: cth:Cthe_1604 phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphate ABC transporter%2C permease protein PstC~IMG reference gene:2504608968~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstC%3B phosphate ABC transporter%2C permease protein PstA gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2020 Tresu_2021 Tresu_2021 Tresu_2021 2156479 2157315 + phosphate ABC transporter%2C inner membrane subunit PstA COGs: COG0581 ABC-type phosphate transport system permease component~InterPro IPR005672:IPR000515~KEGG: sga:GALLO_1964 phosphate ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphate transport system permease protein 2~IMG reference gene:2504608969~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstA gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2021 Tresu_2022 Tresu_2022 Tresu_2022 2157308 2158063 + phosphate ABC transporter%2C ATPase subunit COGs: COG1117 ABC-type phosphate transport system ATPase component~InterPro IPR003593:IPR005670:IPR003439~KEGG: sga:GALLO_1963 phosphate ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Phosphate ABC transporter ATP-binding protein%2C PhoT family (TC 3.A.1.7.1)%3B~TIGRFAM: Phosphate transport system permease protein 1~IMG reference gene:2504608970~PFAM: ABC transporter~TIGRFAM: phosphate ABC transporter%2C ATP-binding protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2022 Tresu_2023 Tresu_2023 Tresu_2023 2158109 2158768 + phosphate uptake regulator%2C PhoU COGs: COG0704 Phosphate uptake regulator~InterPro IPR008170~KEGG: cth:Cthe_1601 phosphate uptake regulator%2C PhoU~PFAM: PhoU~SPTR: Phosphate uptake regulator%2C PhoU%3B~TIGRFAM: PhoU~IMG reference gene:2504608971~PFAM: PhoU domain~TIGRFAM: phosphate transport system regulatory protein PhoU gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2023 Tresu_2024 Tresu_2024 Tresu_2024 2158989 2160104 + hypothetical protein IMG reference gene:2504608972 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2024 Tresu_2025 Tresu_2025 Tresu_2025 2160200 2160895 - hypothetical protein KEGG: dps:DP2996 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608973 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2025 Tresu_2026 Tresu_2026 Tresu_2026 2161429 2163492 + diguanylate phosphodiesterase with CBS domains COGs: COG2200 FOG: EAL domain~InterPro IPR001633:IPR001932:IPR000644:IPR010822~KEGG: cst:CLOST_2561 diguanylate cyclase/phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Cystathionine beta-synthase%2C core%3B Sporulation stage II%2C protein E C-terminal~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Protein phosphatase 2C-like~SPTR: Diguanylate cyclase/phosphodiesterase%3B~IMG reference gene:2504608974~PFAM: EAL domain%3B Stage II sporulation protein E (SpoIIE) gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2026 Tresu_2027 Tresu_2027 Tresu_2027 2163579 2164274 + two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: sta:STHERM_c05370 transcriptional regulatory protein~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504608975~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2027 Tresu_2028 Tresu_2028 Tresu_2028 2164278 2165696 + histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003660:IPR003661:IPR003594~KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504608976~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2028 Tresu_2029 Tresu_2029 Tresu_2029 2165758 2166429 + DNA repair protein RadC COGs: COG2003 DNA repair protein~InterPro IPR001405~KEGG: tde:TDE0973 DNA repair protein RadC~PFAM: Uncharacterised protein family UPF0758~SPTR: DNA repair protein RadC%3B~TIGRFAM: Uncharacterised protein family UPF0758~IMG reference gene:2504608977~PFAM: Protein of unknown function (DUF2466)~TIGRFAM: DNA repair protein radc gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2029 Tresu_2030 Tresu_2030 Tresu_2030 2166469 2167710 + peptidase S1 and S6 chymotrypsin/Hap COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001478:IPR001254~KEGG: tde:TDE1966 trypsin domain/PDZ domain-containing protein~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap~SMART: PDZ/DHR/GLGF~SPTR: Trypsin domain/PDZ domain protein%3B~IMG reference gene:2504608978~PFAM: Trypsin gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2030 Tresu_2031 Tresu_2031 Tresu_2031 2167865 2169862 + UvrABC system protein B COGs: COG0556 Helicase subunit of the DNA excision repair complex~HAMAP: Excinuclease ABC%2C B subunit~InterProIPR014001:IPR001650:IPR004807:IPR006935:IPR 001943~KEGG: tde:TDE1369 excinuclease ABC subunit B~PFAM: Helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B UvrB/UvrC protein~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: UvrABC system protein B%3B~TIGRFAM: Excinuclease ABC%2C B subunit~IMG reference gene:2504608979~PFAM: Helicase conserved C-terminal domain%3B UvrB/uvrC motif%3B Type III restriction enzyme%2C res subunit%3B Ultra-violet resistance protein B~TIGRFAM: excinuclease ABC%2C B subunit gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2031 Tresu_2032 Tresu_2032 Tresu_2032 2169885 2170160 + hypothetical protein IMG reference gene:2504608980 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2032 Tresu_2033 Tresu_2033 Tresu_2033 2170373 2172478 + S-layer domain-containing protein InterPro IPR001119~KEGG: cce:Ccel_2338 hypothetical protein~PFAM: S-layer homology domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608981~PFAM: S-layer homology domain gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2033 Tresu_2034 Tresu_2034 Tresu_2034 2172787 2173017 + 50S ribosomal protein L28 COGs: COG0227 Ribosomal protein L28~HAMAP: Ribosomal protein L28~InterPro IPR001383~KEGG: tde:TDE0991 ribosomal protein L28~PFAM: Ribosomal protein L28~SPTR: 50S ribosomal protein L28%3B~TIGRFAM: Ribosomal protein L28~IMG reference gene:2504608982~PFAM: Ribosomal L28 family~TIGRFAM: ribosomal protein L28 gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2034 Tresu_2035 Tresu_2035 Tresu_2035 2173160 2174116 + hypothetical protein IMG reference gene:2504608983 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2035 Tresu_2036 Tresu_2036 Tresu_2036 2174188 2175084 - beta-lactamase domain protein COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I~InterPro IPR001279~KEGG: hor:Hore_11000 beta-lactamase domain protein~PFAM: Beta-lactamase-like~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2504608984~PFAM: Metallo-beta-lactamase superfamily gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2036 Tresu_2037 Tresu_2037 Tresu_2037 2175466 2176284 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR014284:IPR009042:IPR007627:IPR007624:IPR 007630~KEGG: lcr:LCRIS_01196 RNA polymerase sigma factor~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504608985~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2037 Tresu_2038 Tresu_2038 Tresu_2038 2176710 2178170 + Asparaginyl-tRNA synthetase COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase~HAMAP: Asparaginyl-tRNA synthetase%2C class IIb~InterPro IPR004522:IPR004365:IPR004364~KEGG: tde:TDE0980 asparaginyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: Asparagine--tRNA ligase~SPTR: Asparaginyl-tRNA synthetase%3B~TIGRFAM: Asparaginyl-tRNA synthetase%2C class IIb~IMG reference gene:2504608986~PFAM: tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: asparaginyl-tRNA synthetase gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2038 Tresu_2039 Tresu_2039 Tresu_2039 2178303 2179202 + hypothetical protein KEGG: ssm:Spirs_0536 type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2504608987 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2039 Tresu_2040 Tresu_2040 Tresu_2040 2179199 2180476 + cyclic nucleotide-binding protein COGs: COG1295 membrane protein~InterPro IPR004664:IPR000595~KEGG: tde:TDE0150 ribonuclease BN-like family protein~PFAM: Cyclic nucleotide-binding domain%3B Ribonuclease BN-related~SPTR: Ribonuclease BN-like family protein%3B~IMG reference gene:2504608988~PFAM: Ribonuclease BN-like family%3B Cyclic nucleotide-binding domain gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2040 Tresu_2041 Tresu_2041 Tresu_2041 2180439 2180549 - hypothetical protein IMG reference gene:2504608989 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2041 Tresu_2042 Tresu_2042 Tresu_2042 2180816 2182693 + GMP synthase%2C small subunit COGs: COG0519 GMP synthase PP-ATPase domain/subunit~InterPro IPR004739:IPR000991:IPR022310:IPR001674~KEGG: cpv:cgd5_4520 GMP synthase~PFAM: Glutamine amidotransferase class-I%2C C-terminal%3B NAD/GMP synthase%3B GMP synthase%2C C-terminal~SPTR: Guanosine monophosphate synthase%3B~TIGRFAM: GMP synthase%2C N-terminal~IMG reference gene:2504608990~PFAM: GMP synthase C terminal domain%3B Glutamine amidotransferase class-I%3B NAD synthase~TIGRFAM: GMP synthase (glutamine-hydrolyzing)%2C C-terminal domain or B subunit%3B GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain or A subunit gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2042 Tresu_2043 Tresu_2043 Tresu_2043 2182765 2184531 + diguanylate cyclase/phosphodiesterase COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain~InterPro IPR000160:IPR001633~KEGG: cce:Ccel_0626 diguanylate cyclase/phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SPTR: Diguanylate cyclase/phosphodiesterase%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504608991~PFAM: EAL domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2043 Tresu_2044 Tresu_2044 Tresu_2044 2184537 2184977 - Holliday junction resolvase-like protein COGs: COG4741 secreted endonuclease distantly related to Holliday junction resolvase~InterPro IPR019287~KEGG: tde:TDE2613 hypothetical protein~PFAM: Holliday junction resolvase-related~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608992~PFAM: Endonuclease related to archaeal Holliday junction resolvase gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2044 Tresu_2045 Tresu_2045 Tresu_2045 2187841 2188164 + pseudogene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2045 Tresu_2046 Tresu_2046 Tresu_2046 2186289 2187200 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504608994 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2046 Tresu_2047 Tresu_2047 Tresu_2047 2187217 2187546 - hypothetical protein IMG reference gene:2504608995 gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2047 Tresu_2048 Tresu_2048 Tresu_2048 2188234 2188896 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: csh:Closa_2540 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Polar amino acid ABC transporter%2C inner membrane subunit%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~IMG reference gene:2504608996~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2048 Tresu_2049 Tresu_2049 Tresu_2049 2188874 2189578 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: sgo:SGO_0984 amino acid permease protein SP0710~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: ABC transporter%2C permease protein%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~IMG reference gene:2504608997~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2049 Tresu_2050 Tresu_2050 Tresu_2050 2189595 2190347 + Fe(3+)-transporting ATPase COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: ccb:Clocel_3469 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Fe(3+)-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504608998~PFAM: ABC transporter gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2050 Tresu_2051 Tresu_2051 Tresu_2051 2190415 2191251 + ABC-type transporter%2C periplasmic subunit family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638~KEGG: sga:GALLO_1234 amino acid ABC transporter%2C substrate binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3~SPTR: Bacterial extracellular solute-binding protein%2C family 3%3B~IMG reference gene:2504608999~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2051 Tresu_2052 Tresu_2052 Tresu_2052 2191309 2191731 + protein of unknown function DUF6 transmembrane COGs: COG2510 membrane protein~InterPro IPR000620~KEGG: bpb:bpr_I2698 hypothetical protein~PFAM: Drug/metabolite transporter~SPTR: Putative membrane protein%3B~IMG reference gene:2504609000~PFAM: EamA-like transporter family gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2052 Tresu_2053 Tresu_2053 Tresu_2053 2191746 2192729 - hypothetical protein COGs: COG2933 SAM-dependent methyltransferase~KEGG: tde:TDE2541 hypothetical protein~SPTR: Methyltransferase%3B~IMG reference gene:2504609001~PFAM: FtsJ-like methyltransferase gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2053 Tresu_2054 Tresu_2054 Tresu_2054 2192726 2193115 - hypothetical protein IMG reference gene:2504609002 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2054 Tresu_2055 Tresu_2055 Tresu_2055 2193117 2194850 - acetolactate synthase%2C large subunit%2C biosynthetic type COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR012846:IPR012001:IPR012000:IPR011766~KEGG: amt:Amet_3400 acetolactate synthase%2C large subunit%2C biosynthetic type~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain%3B Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Acetolactate synthase~SPTR: Acetolactate synthase%3B~TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~IMG reference gene:2504609003~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2055 Tresu_2056 Tresu_2056 Tresu_2056 2194959 2196650 - Dihydroxy-acid dehydratase COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase~HAMAP: Dihydroxy-acid dehydratase~InterPro IPR004404:IPR000581~KEGG: bpb:bpr_I1338 dihydroxy-acid dehydratase IlvD~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase~PRIAM: Dihydroxy-acid dehydratase~SPTR: Dihydroxy-acid dehydratase%3B~TIGRFAM: Dihydroxy-acid dehydratase~IMG reference gene:2504609004~PFAM: Dehydratase family~TIGRFAM: dihydroxy-acid dehydratase gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2056 Tresu_2057 Tresu_2057 Tresu_2057 2196827 2197864 - O-sialoglycoprotein endopeptidase COGs: COG0533 Metal-dependent protease with possible chaperone activity~HAMAP: Peptidase M22%2C O-sialoglycoprotein peptidase~InterPro IPR022450:IPR017861:IPR000905~KEGG: tde:TDE2504 putative DNA-binding/iron metalloprotein/AP endonuclease~PFAM: Peptidase M22%2C glycoprotease~PRIAM: O-sialoglycoprotein endopeptidase~SPTR: Probable O-sialoglycoprotein endopeptidase%3B~TIGRFAM: Peptidase M22%2C O-sialoglycoprotein peptidase%3B Peptidase M22%2C glycoprotease%2C subgroup~IMG reference gene:2504609005~PFAM: Glycoprotease family~TIGRFAM: putative glycoprotease GCP%3B metallohydrolase%2C glycoprotease/Kae1 family gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2057 Tresu_2058 Tresu_2058 Tresu_2058 2197892 2199061 - protein of unknown function DUF610 YibQ COGs: COG2861 conserved hypothetical protein~InterPro IPR006837~KEGG: tde:TDE2503 hypothetical protein~PFAM: Protein of unknown function DUF610%2C YibQ~SPTR: Conserved domain protein%3B~IMG reference gene:2504609006~PFAM: Divergent polysaccharide deacetylase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2058 Tresu_2059 Tresu_2059 Tresu_2059 2199091 2200044 - parB-like partition protein COGs: COG1475 transcriptional regulator protein~InterPro IPR003115:IPR004437~KEGG: ssm:Spirs_4300 ParB-like partition protein~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: ParB-like partition protein%3B~TIGRFAM: ParB-like partition protein~IMG reference gene:2504609007~PFAM: ParB-like nuclease domain%3B KorB domain~TIGRFAM: ParB-like partition proteins gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2059 Tresu_2060 Tresu_2060 Tresu_2060 2200037 2200792 - Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: tde:TDE0607 ParA family ATPase~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: ParA family ATPase%3B~IMG reference gene:2504609008~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2060 Tresu_2061 Tresu_2061 Tresu_2061 2200891 2202240 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: ere:EUBREC_1019 hypothetical protein~PFAM: Multi antimicrobial extrusion protein~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504609009~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2061 Tresu_2062 Tresu_2062 Tresu_2062 2202568 2203767 + pseudogene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2062 Tresu_2063 Tresu_2063 Tresu_2063 2203827 2205608 + phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterPro IPR005844:IPR005845:IPR005846~KEGG: tde:TDE1998 phosphohexose mutase family protein~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III~SPTR: Phosphoglucomutase%3B~IMG reference gene:2504609011~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2063 Tresu_2064 Tresu_2064 Tresu_2064 2205669 2206319 + DNA polymerase III%2C epsilon subunit COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type)~InterPro IPR006055:IPR006054:IPR013520~KEGG: tde:TDE1999 DNA polymerase III domain-containing protein~PFAM: Exonuclease%2C RNase T/DNA polymerase III~PRIAM: DNA-directed DNA polymerase~SMART: Exonuclease~SPTR: DNA polymerase III domain protein%3B~TIGRFAM: DNA polymerase III%2C epsilon subunit~manually curated~IMG reference gene:2504609012~PFAM: Exonuclease~TIGRFAM: exonuclease%2C DNA polymerase III%2C epsilon subunit family gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2064 Tresu_2065 Tresu_2065 Tresu_2065 2206370 2207725 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: csh:Closa_3357 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative efflux protein%2C MATE family%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504609013~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2065 Tresu_2066 Tresu_2066 Tresu_2066 2207752 2208618 - Peptidase M23 COGs: COG4942 Membrane-bound metallopeptidase~InterPro IPR002482:IPR018392:IPR016047~KEGG: tde:TDE1297 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504609014~PFAM: Peptidase family M23%3B LysM domain gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2066 Tresu_2067 Tresu_2067 Tresu_2067 2208672 2209463 - Dihydrodipicolinate reductase COGs: COG0289 Dihydrodipicolinate reductase~HAMAP: Dihydrodipicolinate reductase%2C bacterial/plant~InterPro IPR011770:IPR000846:IPR022663~KEGG: sta:STHERM_c08680 dihydrodipicolinate reductase~PFAM: Dihydrodipicolinate reductase%2C C-terminal%3B Dihydrodipicolinate reductase%2C N-terminal~PRIAM: Dihydrodipicolinate reductase~SPTR: Dihydrodipicolinate reductase%3B~TIGRFAM: Dihydrodipicolinate reductase%2C bacterial/plant~IMG reference gene:2504609015~PFAM: Dihydrodipicolinate reductase%2C N-terminus%3B Dihydrodipicolinate reductase%2C C-terminus~TIGRFAM: dihydrodipicolinate reductase gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2067 Tresu_2068 Tresu_2068 Tresu_2068 2209482 2210807 - aspartate kinase COGs: COG0527 Aspartokinase~InterPro IPR001341:IPR001048:IPR002912~KEGG: ath:AT5G13280 AK-LYS1 (ASPARTATE KINASE 1)%3B aspartate kinase~PFAM: Aspartate/glutamate/uridylate kinase%3B Amino acid-binding ACT~PRIAM: Aspartate kinase~SPTR: Aspartokinase%3B~TIGRFAM: Aspartate kinase domain~IMG reference gene:2504609016~PFAM: ACT domain%3B Amino acid kinase family~TIGRFAM: aspartate kinase gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2068 Tresu_2069 Tresu_2069 Tresu_2069 2210822 2212177 - Uncharacterized conserved protein UCP033563 COGs: COG4198 conserved hypothetical protein~InterPro IPR008323~KEGG: cth:Cthe_3196 hypothetical protein~PFAM: Uncharacterised conserved protein UCP033563~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609017~PFAM: Protein of unknown function (DUF1015) gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2069 Tresu_2070 Tresu_2070 Tresu_2070 2212228 2213661 + RNA polymerase%2C sigma 54 subunit%2C RpoN COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog~InterPro IPR000394:IPR007046:IPR007634~KEGG: ssm:Spirs_4048 RNA polymerase%2C sigma 54 subunit%2C RpoN~PFAM: RNA polymerase sigma factor 54%2C DNA-binding%3B RNA polymerase sigma factor 54%2C core-binding%3B RNA polymerase sigma factor 54~SPTR: RNA polymerase%2C sigma 54 subunit%2C RpoN%3B~TIGRFAM: RNA polymerase sigma factor 54~IMG reference gene:2504609018~PFAM: Sigma-54 factor%2C Activator interacting domain (AID)%3B Sigma-54%2C DNA binding domain%3B Sigma-54 factor%2C core binding domain~TIGRFAM: RNA polymerase sigma-54 factor gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2070 Tresu_2071 Tresu_2071 Tresu_2071 2213736 2214026 - ribosomal subunit interface protein%2C putative KEGG: tde:TDE1296 ribosomal subunit interface protein%2C putative~SPTR: Ribosomal subunit interface protein%2C putative%3B~IMG reference gene:2504609019~PFAM: Sigma 54 modulation protein / S30EA ribosomal protein gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2071 Tresu_2072 Tresu_2072 Tresu_2072 2214211 2214525 + hypothetical protein IMG reference gene:2504609020 gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2072 Tresu_2073 Tresu_2073 Tresu_2073 2214606 2216270 - Na/Pi-cotransporter II-related protein COGs: COG1283 Na+/phosphate symporter~InterPro IPR004633:IPR003841:IPR008170~KEGG: tde:TDE1964 Na/Pi cotransporter family protein~PFAM: Na/Pi-cotransporter%3B PhoU~SPTR: Na/Pi cotransporter family protein%3B~TIGRFAM: Na/Pi co-transporter II-related~IMG reference gene:2504609021~PFAM: PhoU domain%3B Na+/Pi-cotransporter~TIGRFAM: Na/Pi-cotransporter gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2073 Tresu_2074 Tresu_2074 Tresu_2074 2216401 2216784 - pseudogene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2074 Tresu_2075 Tresu_2075 Tresu_2075 2216906 2217451 - NLP/P60 protein InterPro IPR000064~KEGG: dth:DICTH_0266 chitinase 3~PFAM: NLP/P60~SPTR: Chitinase 3%3B~IMG reference gene:2504609023~PFAM: NlpC/P60 family gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2075 Tresu_2076 Tresu_2076 Tresu_2076 2217728 2219590 - Phosphoenolpyruvate carboxykinase (GTP) COGs: COG1274 Phosphoenolpyruvate carboxykinase (GTP)~HAMAP: Phosphoenolpyruvate carboxykinase%2C GTP-utilising~InterPro IPR008209~KEGG: fsu:Fisuc_2949 phosphoenolpyruvate carboxykinase~PFAM: Phosphoenolpyruvate carboxykinase%2C GTP-utilising~PRIAM: Phosphoenolpyruvate carboxykinase (GTP)~SPTR: Phosphoenolpyruvate carboxykinase [GTP]%3B~IMG reference gene:2504609024~PFAM: Phosphoenolpyruvate carboxykinase gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2076 Tresu_2077 Tresu_2077 Tresu_2077 2219951 2220523 - Elongation factor P COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)~HAMAP: Translation elongation factor P~InterPro IPR015365:IPR011768:IPR013185:IPR001059~KEGG: ipo:Ilyop_2607 translation elongation factor P (EF-P)~PFAM: Elongation factor P%2C C-terminal%3B Translation elongation factor P/YeiP%2C central%3B Translation elongation factor%2C KOW-like~SMART: Elongation factor P%2C C-terminal~SPTR: Translation elongation factor P (EF-P)%3B~TIGRFAM: Translation elongation factor P~IMG reference gene:2504609025~PFAM: Elongation factor P%2C C-terminal%3B Elongation factor P (EF-P) KOW-like domain%3B Elongation factor P (EF-P) OB domain~TIGRFAM: translation elongation factor P gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2077 Tresu_2078 Tresu_2078 Tresu_2078 2220625 2221872 - Uncharacterized conserved protein UCP015557 COGs: COG4394 conserved hypothetical protein~InterPro IPR016633~KEGG: fnu:FN0719 putative cytoplasmic protein~PFAM: Uncharacterised conserved protein UCP015557~SPTR: Hypothetical Cytosolic Protein%3B~IMG reference gene:2504609026~PFAM: Uncharacterized protein conserved in bacteria (DUF2331)~TIGRFAM: conserved hypothetical protein%2C PP_1857 family gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2078 Tresu_2079 Tresu_2079 Tresu_2079 2221914 2223479 + Mg chelatase%2C subunit ChlI COGs: COG0606 ATPase with chaperone activity~InterPro IPR004482:IPR000523~KEGG: tde:TDE1995 magnesium chelatase family protein~PFAM: Magnesium chelatase%2C ChlI subunit~SPTR: Magnesium chelatase family protein%3B~TIGRFAM: Mg chelatase-related protein~IMG reference gene:2504609027~PFAM: Magnesium chelatase%2C subunit ChlI~TIGRFAM: Mg chelatase-related protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2079 Tresu_2080 Tresu_2080 Tresu_2080 2223800 2225362 + ATP-dependent DNA helicase%2C RecQ family COGs: COG0514 Superfamily II DNA helicase~InterProIPR014001:IPR001650:IPR002121:IPR004589:IPR 011545~KEGG: tde:TDE0326 ATP-dependent DNA helicase RecQ~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain~SPTR: ATP-dependent DNA helicase RecQ%3B~TIGRFAM: DNA helicase%2C ATP-dependent%2C RecQ type~IMG reference gene:2504609029~PFAM: Helicase conserved C-terminal domain%3B HRDC domain%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent DNA helicase RecQ%3B ATP-dependent DNA helicase%2C RecQ family gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2080 Tresu_2081 Tresu_2081 Tresu_2081 2225410 2227098 - PBS lyase HEAT domain protein repeat-containing protein InterPro IPR004155~KEGG: tde:TDE0437 heat repeat-containing PBS lyase~PFAM: PBS lyase HEAT-like repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609030 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2081 Tresu_2082 Tresu_2082 Tresu_2082 2227133 2228269 - Queuine tRNA-ribosyltransferase COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase~HAMAP: Queuine tRNA-ribosyltransferase~InterPro IPR004803:IPR002616~KEGG: tde:TDE0438 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase~PRIAM: tRNA-guanine transglycosylase~SPTR: Queuine tRNA-ribosyltransferase%3B~TIGRFAM: Queuine tRNA-ribosyltransferase%3B Queuine/other tRNA-ribosyltransferase~IMG reference gene:2504609031~PFAM: Queuine tRNA-ribosyltransferase~TIGRFAM: tRNA-guanine transglycosylases%2C various specificities%3B tRNA-guanine transglycosylase%2C queuosine-34-forming gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2082 Tresu_2083 Tresu_2083 Tresu_2083 2228294 2229364 - permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: tde:TDE1044 hypothetical protein~PFAM: Permease YjgP/YjgQ%2C predicted~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504609032~PFAM: Predicted permease YjgP/YjgQ family gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2083 Tresu_2084 Tresu_2084 Tresu_2084 2229361 2230704 - permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: tde:TDE1043 hypothetical protein~PFAM: Permease YjgP/YjgQ%2C predicted~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504609033~PFAM: Predicted permease YjgP/YjgQ family gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2084 Tresu_2085 Tresu_2085 Tresu_2085 2230710 2231153 - Deoxyuridine 5'-triphosphate nucleotidohydrolase COGs: COG0756 dUTPase~HAMAP: DeoxyUTP pyrophosphatase~InterPro IPR008181:IPR008180~KEGG: tde:TDE1042 deoxyuridine 5'triphosphate nucleotidohydrolase~PFAM: DeoxyUTP pyrophosphatase domain~PRIAM: dUTP diphosphatase~SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase%3B~TIGRFAM: DeoxyUTP pyrophosphatase~IMG reference gene:2504609034~PFAM: dUTPase~TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2085 Tresu_2086 Tresu_2086 Tresu_2086 2231138 2232424 - processing peptidase COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863~KEGG: aoe:Clos_1536 peptidase M16 domain-containing protein~PFAM: Peptidase M16%2C N-terminal%3B Peptidase M16%2C C-terminal~PRIAM: processing peptidase~SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2504609035~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2086 Tresu_2087 Tresu_2087 Tresu_2087 2232532 2234622 - Polyribonucleotide nucleotidyltransferase COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)~HAMAP: Polyribonucleotide nucleotidyltransferase~InterProIPR004087:IPR022967:IPR012162:IPR001247:IPR 015847:IPR015848:IPR018111:IPR003029~KEGG: tde:TDE1041 polynucleotide phosphorylase/polyadenylase~PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Exoribonuclease%2C phosphorolytic domain 2%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type%3B K Homology%2C type 1%2C subgroup%3B Ribosomal protein S1%2C RNA-binding domain~PRIAM: Polyribonucleotide nucleotidyltransferase~SMART: RNA-binding domain%2C S1%3B K Homology~SPTR: Polyribonucleotide nucleotidyltransferase%3B~TIGRFAM: Polyribonucleotide nucleotidyltransferase~IMG reference gene:2504609036~PFAM: KH domain%3B S1 RNA binding domain%3B 3' exoribonuclease family%2C domain 1%3B 3' exoribonuclease family%2C domain 2%3B Polyribonucleotide nucleotidyltransferase%2C RNA binding domain~TIGRFAM: polyribonucleotide nucleotidyltransferase gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2087 Tresu_2088 Tresu_2088 Tresu_2088 2234829 2235098 - ribosomal protein S15 COGs: COG0184 Ribosomal protein S15P/S13E~InterPro IPR005290:IPR000589~KEGG: tde:TDE1040 30S ribosomal protein S15~PFAM: Ribosomal protein S15~SPTR: 30S ribosomal protein S15%3B~TIGRFAM: Ribosomal protein S15%2C bacterial-type~IMG reference gene:2504609037~PFAM: Ribosomal protein S15~TIGRFAM: ribosomal protein S15%2C bacterial/organelle gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2088 Tresu_2089 Tresu_2089 Tresu_2089 2235260 2237122 - tRNA pseudouridine synthase B COGs: COG0130 Pseudouridine synthase~HAMAP: tRNA pseudouridine synthase II%2C TruB~InterPro IPR014780:IPR004821:IPR002501:IPR015864~KEGG: tde:TDE1104 tRNA pseudouridine synthase B~PFAM: Pseudouridine synthase II%3B FAD synthetase~SPTR: tRNA pseudouridine synthase B%3B~TIGRFAM: tRNA pseudouridine synthase II%2C TruB%3B Cytidyltransferase-related~manually curated~IMG reference gene:2504609038~PFAM: TruB family pseudouridylate synthase (N terminal domain)%3B FAD synthetase~TIGRFAM: tRNA pseudouridine 55 synthase gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2089 Tresu_2090 Tresu_2090 Tresu_2090 2237091 2237495 - Ribosome-binding factor A COGs: COG0858 Ribosome-binding factor A~HAMAP: Ribosome-binding factor A~InterPro IPR000238~KEGG: tde:TDE1105 ribosome-binding factor A~PFAM: Ribosome-binding factor A~SPTR: Ribosome-binding factor A%3B~TIGRFAM: Ribosome-binding factor A~IMG reference gene:2504609039~PFAM: Ribosome-binding factor A~TIGRFAM: ribosome-binding factor A gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2090 Tresu_2091 Tresu_2091 Tresu_2091 2237507 2240242 - translation initiation factor IF-2 COGs: COG0532 Translation initiation factor 2 (IF-2%3B GTPase)~InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161~KEGG: tde:TDE1106 translation initiation factor IF-2~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation initiation factor IF-2%2C N-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2~SPTR: Translation initiation factor IF-2%3B~TIGRFAM: Translation initiation factor aIF-2%2C bacterial-like%3B Small GTP-binding protein~IMG reference gene:2504609040~PFAM: Elongation factor Tu domain 2%3B Translation-initiation factor 2%3B Translation initiation factor IF-2%2C N-terminal region%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation initiation factor IF-2 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2091 Tresu_2092 Tresu_2092 Tresu_2092 2240261 2241715 - NusA antitermination factor COGs: COG0195 Transcription elongation factor~InterPro IPR022967:IPR010213:IPR013735~KEGG: sta:STHERM_c11190 hypothetical protein~PFAM: Transcription factor NusA%2C N-terminal~SMART: RNA-binding domain%2C S1~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Transcription termination factor NusA~IMG reference gene:2504609041~PFAM: NusA N-terminal domain~TIGRFAM: transcription termination factor NusA gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2092 Tresu_2093 Tresu_2093 Tresu_2093 2241727 2242194 - protein of unknown function DUF150 InterPro IPR003728~KEGG: tde:TDE1108 hypothetical protein~PFAM: Ribosome maturation factor RimP~SPTR: Ribosome maturation factor rimP%3B~IMG reference gene:2504609042~PFAM: Uncharacterised BCR%2C YhbC family COG0779 gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2093 Tresu_2094 Tresu_2094 Tresu_2094 2242399 2243529 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504609043~PFAM: Transposase DDE domain gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2094 Tresu_2095 Tresu_2095 Tresu_2095 2243909 2244499 + adenylyl cyclase CyaB InterPro IPR008173:IPR008172~KEGG: bdu:BDU_726 adenylyl cyclase%2C CyaB-type%2C putative~PFAM: Adenylate cyclase~SPTR: Adenylyl cyclase%2C CyaB-type%2C putative%3B~TIGRFAM: Adenylyl cyclase CyaB~IMG reference gene:2504609044~PFAM: CYTH domain~TIGRFAM: adenylyl cyclase CyaB%2C putative gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2095 Tresu_2096 Tresu_2096 Tresu_2096 2244541 2245188 + protein of unknown function DUF975 InterPro IPR010380~KEGG: pjd:Pjdr2_0672 protein of unknown function DUF975~PFAM: Protein of unknown function DUF975~SPTR: Integral membrane protein%3B~IMG reference gene:2504609045~PFAM: Protein of unknown function (DUF975) gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2096 Tresu_2097 Tresu_2097 Tresu_2097 2245218 2246249 + signal peptide peptidase SppA%2C 36K type COGs: COG0616 Periplasmic serine protease (ClpP class)~InterPro IPR004635:IPR002142~KEGG: cth:Cthe_1421 signal peptide peptidase SppA%2C 36K type~PFAM: Peptidase S49~SPTR: Signal peptide peptidase SppA%2C 36K type%3B~TIGRFAM: Peptidase S49%2C SppA~IMG reference gene:2504609046~PFAM: Peptidase family S49~TIGRFAM: signal peptide peptidase SppA%2C 36K type gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2097 Tresu_2098 Tresu_2098 Tresu_2098 2246240 2246818 - Regulatory protein recX COGs: COG2137 conserved hypothetical protein~HAMAP: Regulatory protein RecX~InterPro IPR003783~KEGG: tde:TDE0854 recombination regulator RecX~PFAM: Regulatory protein RecX~SPTR: Regulatory protein recX%3B~IMG reference gene:2504609047~PFAM: RecX family gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2098 Tresu_2099 Tresu_2099 Tresu_2099 2246857 2247249 - ribosomal protein S9 COGs: COG0103 Ribosomal protein S9~InterPro IPR000754~KEGG: ssm:Spirs_3752 ribosomal protein S9~PFAM: Ribosomal protein S9~SPTR: 30S ribosomal protein S9%3B~IMG reference gene:2504609048~PFAM: Ribosomal protein S9/S16 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2099 Tresu_2100 Tresu_2100 Tresu_2100 2247264 2247692 - ribosomal protein L13 COGs: COG0102 Ribosomal protein L13~InterPro IPR005823:IPR005822~KEGG: sth:STH3041 50S ribosomal protein L13~PFAM: Ribosomal protein L13~SPTR: 50S ribosomal protein L13%3B~TIGRFAM: Ribosomal protein L13%2C bacterial-type~IMG reference gene:2504609049~PFAM: Ribosomal protein L13~TIGRFAM: ribosomal protein L13%2C bacterial type gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2100 Tresu_2101 Tresu_2101 Tresu_2101 2247881 2248102 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609050 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2101 Tresu_2102 Tresu_2102 Tresu_2102 2248173 2248709 - Rubrerythrin COGs: COG1592 Rubrerythrin~InterPro IPR003251~KEGG: cpy:Cphy_0524 rubrerythrin~PFAM: Rubrerythrin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609051~PFAM: Rubrerythrin gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2102 Tresu_2103 Tresu_2103 Tresu_2103 2248819 2249151 - branched-chain amino acid transport COGs: COG1687 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR008407~KEGG: mba:Mbar_A2617 branched chain amino acid transport protein AzlD~PFAM: Branched-chain amino acid transport%2C AzlD~SPTR: Branched-chain amino acid transport%3B~IMG reference gene:2504609052~PFAM: Branched-chain amino acid transport protein (AzlD) gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2103 Tresu_2104 Tresu_2104 Tresu_2104 2249148 2249903 - AzlC family protein COGs: COG1296 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR011606~KEGG: mma:MM_3262 branched chain amino acid ABC transporter~PFAM: Branched-chain amino acid transport%2C permease~SPTR: Branched-chain amino acid transport protein%3B~IMG reference gene:2504609053~PFAM: AzlC protein~TIGRFAM: 4-azaleucine resistance probable transporter AzlC gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2104 Tresu_2105 Tresu_2105 Tresu_2105 2250144 2251334 + Polyamine-transporting ATPase COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611~KEGG: tpp:TPASS_0652 spermidine/putrescine ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Spermidine/putrescine import ATP-binding protein PotA%3B~IMG reference gene:2504609054~PFAM: ABC transporter%3B TOBE domain~TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2105 Tresu_2106 Tresu_2106 Tresu_2106 2251331 2252350 + ABC-type transporter%2C integral membrane subunit COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I~InterPro IPR000515~KEGG: tpp:TPASS_0653 spermidine/putrescine ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Spermidine/putrescine transport system permease protein PotB%3B~IMG reference gene:2504609055~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2106 Tresu_2107 Tresu_2107 Tresu_2107 2252347 2253219 + ABC-type transporter%2C integral membrane subunit COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II~InterPro IPR000515~KEGG: tpp:TPASS_0654 spermidine/putrescine ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Spermidine/putrescine ABC transporter%2C permease protein%3B~IMG reference gene:2504609056~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2107 Tresu_2108 Tresu_2108 Tresu_2108 2253278 2254321 + spermidine/putrescine ABC transporter%2C periplasmic binding protein COGs: COG0687 Spermidine/putrescine-binding periplasmic protein~KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter%2C periplasmic binding protein~SPTR: Spermidine/putrescine ABC transporter%2C periplasmic binding protein%3B~IMG reference gene:2504609057~PFAM: Bacterial extracellular solute-binding protein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2108 Tresu_2109 Tresu_2109 Tresu_2109 2254323 2255714 + 3-phosphoshikimate 1-carboxyvinyltransferase COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase~HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase~InterPro IPR006264:IPR001986~KEGG: pcu:pc0882 putative 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphate synthase%2C EpsP synthase)~PFAM: Enolpyruvate transferase domain~PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase~SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase 2%3B~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase~IMG reference gene:2504609058~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2109 Tresu_2110 Tresu_2110 Tresu_2110 2255749 2257029 - pseudogene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2110 Tresu_2111 Tresu_2111 Tresu_2111 2257540 2258610 + Phospho-N-acetylmuramoyl-pentapeptide-transferas e COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR000715~KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4~PRIAM:Phospho-N-acetylmuramoyl-pentapeptide-transfe rase~SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase%3B~IMG reference gene:2504609060~PFAM: Glycosyl transferase family 4 gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2111 Tresu_2112 Tresu_2112 Tresu_2112 2258839 2259960 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG2768 Uncharacterized Fe-S center protein~InterPro IPR001450~KEGG: clj:CLJU_c26960 putative Fe-S cluster protein~PFAM: 4Fe-4S binding domain~SPTR: Uncharacterized Fe-S center protein%3B~IMG reference gene:2504609061~PFAM: Domain of unknown function (DUF362) gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2112 Tresu_2113 Tresu_2113 Tresu_2113 2260163 2260570 + hypothetical protein IMG reference gene:2504609062 gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2113 Tresu_2114 Tresu_2114 Tresu_2114 2260796 2261731 + Domain of unknown function DUF88 InterPro IPR021139~KEGG: cch:Cag_1985 cold shock protein~PFAM: Domain of unknown function DUF88~SPTR: Cold shock protein%3B~IMG reference gene:2504609063~PFAM: Protein of unknown function DUF88 gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2114 Tresu_2115 Tresu_2115 Tresu_2115 2261757 2262611 + SCP-like extracellular COGs: COG2340 Uncharacterized protein with SCP/PR1 domains~InterPro IPR014044~KEGG: pin:Ping_0943 allergen V5/TPX-1 family protein~PFAM: CAP domain~SPTR: Allergen V5/Tpx-1 family protein%3B~IMG reference gene:2504609064~PFAM: Cysteine-rich secretory protein family gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2115 Tresu_2116 Tresu_2116 Tresu_2116 2262811 2264088 - Valine--pyruvate transaminase COGs: COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase~InterPro IPR004839~KEGG: vha:VIBHAR_00447 valine--pyruvate transaminase~PFAM: Aminotransferase%2C class I/classII~PRIAM: Valine--pyruvate transaminase~SPTR: Valine--pyruvate aminotransferase%3B~IMG reference gene:2504609065~PFAM: Aminotransferase class I and II gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2116 Tresu_2117 Tresu_2117 Tresu_2117 2264108 2266675 - ATPase AAA-2 domain protein COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489~KEGG: ssm:Spirs_1928 ATPase AAA-2 domain protein~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B UvrB/UvrC protein%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATPase AAA-2 domain protein%3B~IMG reference gene:2504609066~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B Clp amino terminal domain%3B ATPase family associated with various cellular activities (AAA)%3B UvrB/uvrC motif gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2117 Tresu_2118 Tresu_2118 Tresu_2118 2266685 2267797 - ATP:guanido phosphotransferase%2C catalytic domain protein COGs: COG3869 Arginine kinase~InterPro IPR022414~KEGG: tde:TDE2037 ATP:guanido phosphotransferase domain-containing protein~PFAM: ATP:guanido phosphotransferase%2C catalytic domain~SPTR: Putative ATP:guanido phosphotransferase domain protein%3B~IMG reference gene:2504609067~PFAM: ATP:guanido phosphotransferase%2C C-terminal catalytic domain gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2118 Tresu_2119 Tresu_2119 Tresu_2119 2267797 2268333 - UvrB/UvrC protein COGs: COG3880 Uncharacterized protein with conserved CXXC pairs~InterPro IPR001943~KEGG: ssm:Spirs_1926 UvrB/UvrC protein~PFAM: UvrB/UvrC protein~SPTR: UvrB/UvrC protein%3B~IMG reference gene:2504609068~PFAM: UvrB/uvrC motif gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2119 Tresu_2120 Tresu_2120 Tresu_2120 2268372 2269715 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE2039 lipoprotein releasing system%2C permease protein%2C putative~PFAM: Domain of unknown function DUF214%2C ABC transporter permease~SPTR: Lipoprotein releasing system%2C permease protein%2C putative%3B~IMG reference gene:2504609069~PFAM: Predicted permease gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2120 Tresu_2121 Tresu_2121 Tresu_2121 2269712 2270404 - Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE2040 lipoprotein releasing system%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Lipoprotein-releasing system ATP-binding protein LolD%3B~IMG reference gene:2504609070~PFAM: ABC transporter gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2121 Tresu_2122 Tresu_2122 Tresu_2122 2270397 2271677 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE2041 lipoprotein releasing system%2C permease protein%2C putative~PFAM: Domain of unknown function DUF214%2C ABC transporter permease~SPTR: Lipoprotein releasing system%2C permease protein%2C putative%3B~IMG reference gene:2504609071~PFAM: Predicted permease gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2122 Tresu_2123 Tresu_2123 Tresu_2123 2271698 2272564 - hypothetical protein IMG reference gene:2504609072 gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2123 Tresu_2124 Tresu_2124 Tresu_2124 2272564 2273439 - signal recognition particle-docking protein FtsY COGs: COG0552 Signal recognition particle GTPase~InterPro IPR003593:IPR000897:IPR004390~KEGG: tde:TDE2043 signal recognition particle-docking protein FtsY~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase~SMART: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B ATPase%2C AAA+ type%2C core~SPTR: Signal recognition particle-docking protein FtsY%3B~TIGRFAM: Cell division transporter substrate-binding protein FtsY~IMG reference gene:2504609073~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain~TIGRFAM: signal recognition particle-docking protein FtsY gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2124 Tresu_2125 Tresu_2125 Tresu_2125 2273460 2275118 - hypothetical protein KEGG: tde:TDE2044 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504609074 gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2125 Tresu_2126 Tresu_2126 Tresu_2126 2275121 2276267 - hypothetical protein IMG reference gene:2504609075~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 2 gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2126 Tresu_2127 Tresu_2127 Tresu_2127 2276272 2276562 - hypothetical protein KEGG: tde:TDE2047 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609076~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2127 Tresu_2128 Tresu_2128 Tresu_2128 2276836 2277876 + hypothetical protein KEGG: ssm:Spirs_1916 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609077 gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2128 Tresu_2129 Tresu_2129 Tresu_2129 2278282 2278845 - methylated-DNA/protein-cysteinemethyltransferase COGs: COG0350 Methylated DNA-protein cysteine methyltransferase~InterPro IPR014048~KEGG: cth:Cthe_1554 methylated-DNA--protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~IMG reference gene:2504609078~PFAM: 6-O-methylguanine DNA methyltransferase%2C DNA binding domain~TIGRFAM: O-6-methylguanine DNA methyltransferase gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2129 Tresu_2130 Tresu_2130 Tresu_2130 2278846 2279340 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609079 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2130 Tresu_2131 Tresu_2131 Tresu_2131 2279343 2280263 - hypothetical protein COGs: COG4866 conserved hypothetical protein~KEGG: bvu:BVU_0520 hypothetical protein~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2504609080~PFAM: Uncharacterized conserved protein (DUF2156) gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2131 Tresu_2132 Tresu_2132 Tresu_2132 2280396 2280737 - hypothetical protein IMG reference gene:2504609081 gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2132 Tresu_2133 Tresu_2133 Tresu_2133 2280762 2282444 + sulfate transporter COGs: COG0659 Sulfate permease and related transporter (MFS superfamily)~InterPro IPR001902:IPR011547:IPR002645~KEGG: bth:BT_3181 putative sulfate transporter%2C permease~PFAM: Sulphate transporter%3B Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Sulphate anion transporter~IMG reference gene:2504609082~PFAM: Sulfate transporter family%3B STAS domain~TIGRFAM: high affinity sulphate transporter 1 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2133 Tresu_2134 Tresu_2134 Tresu_2134 2282528 2283454 + GTP-binding protein Era-like-protein COGs: COG1159 GTPase~HAMAP: GTP-binding protein Era~InterPro IPR005225:IPR005662:IPR002917:IPR004044~KEGG: tde:TDE1895 GTP-binding protein Era~PFAM: GTP-binding protein%2C HSR1-related%3B K Homology%2C type 2~SPTR: GTPase Era%3B~TIGRFAM: GTP-binding protein Era%3B Small GTP-binding protein~IMG reference gene:2504609083~PFAM: GTPase of unknown function%3B KH domain~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein domain gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2134 Tresu_2135 Tresu_2135 Tresu_2135 2283568 2284698 + GTP-binding protein YchF COGs: COG0012 GTPase probable translation factor~InterPro IPR004396:IPR002917:IPR013029~KEGG: tde:TDE0305 GTP-dependent nucleic acid-binding protein EngD~PFAM: Domain of unknown function DUF933%3B GTP-binding protein%2C HSR1-related~SPTR: GTP-binding protein YchF%3B~TIGRFAM: Conserved hypothetical protein CHP00092~IMG reference gene:2504609084~PFAM: GTPase of unknown function%3B Protein of unknown function (DUF933)~TIGRFAM: GTP-binding protein YchF gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2135 Tresu_2136 Tresu_2136 Tresu_2136 2284747 2286069 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: ana:all4080 ribosomal large chain pseudouridine synthase A~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504609085~PFAM: RNA pseudouridylate synthase gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2136 Tresu_2137 Tresu_2137 Tresu_2137 2286077 2286907 - Phosphomethylpyrimidine kinase type-1 COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase~InterPro IPR013749~KEGG: cco:CCC13826_1956 phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1~SPTR: Phosphomethylpyrimidine kinase type-1%3B~IMG reference gene:2504609086~PFAM: Phosphomethylpyrimidine kinase gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2137 Tresu_2138 Tresu_2138 Tresu_2138 2287008 2288465 + transcriptional regulator%2C GntR family with aminotransferase domain COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs~InterPro IPR000524:IPR004839~KEGG: ere:EUBREC_2949 hypothetical protein~PFAM: HTH transcriptional regulator%2C GntR%3B Aminotransferase%2C class I/classII~SMART: HTH transcriptional regulator%2C GntR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609087~PFAM: Aminotransferase class I and II%3B Bacterial regulatory proteins%2C gntR family gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2138 Tresu_2139 Tresu_2139 Tresu_2139 2288487 2289065 - Xanthine phosphoribosyltransferase COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein~HAMAP: Xanthine phosphoribosyltransferase~InterPro IPR010079:IPR000836~KEGG: gvg:HMPREF0421_21105 xanthine phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~PRIAM: Xanthine phosphoribosyltransferase~SPTR: Xanthine phosphoribosyltransferase%3B~TIGRFAM: Xanthine phosphoribosyltransferase~IMG reference gene:2504609088~PFAM: Phosphoribosyl transferase domain~TIGRFAM: xanthine phosphoribosyltransferase gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2139 Tresu_2140 Tresu_2140 Tresu_2140 2289109 2291019 - (p)ppGpp synthetase I%2C SpoT/RelA COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase~InterPro IPR007685:IPR004811:IPR006674:IPR004095~KEGG: ssm:Spirs_3047 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT%3B Metal-dependent phosphohydrolase%2C HD subdomain%3B TGS~PRIAM: GTP diphosphokinase~SMART: RelA/SpoT~SPTR: GTP pyrophosphokinase%3B~TIGRFAM: RelA/SpoT protein~IMG reference gene:2504609089~PFAM: Region found in RelA / SpoT proteins%3B TGS domain~TIGRFAM: (p)ppGpp synthetase%2C RelA/SpoT family gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2140 Tresu_2141 Tresu_2141 Tresu_2141 2291081 2292547 - peptidase U32 COGs: COG0826 Collagenase and related protease~InterPro IPR001539~KEGG: tde:TDE2262 U32 family peptidase~PFAM: Peptidase U32~SPTR: Peptidase%2C U32 family%3B~IMG reference gene:2504609090~PFAM: Peptidase family U32 gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2141 Tresu_2142 Tresu_2142 Tresu_2142 2292551 2293507 - acetyl hydrolase%2C putative COGs: COG0657 Esterase/lipase~InterPro IPR013094~KEGG: tde:TDE2263 acetyl hydrolase%2C putative~SPTR: Acetyl hydrolase%2C putative%3B~IMG reference gene:2504609091~PFAM: alpha/beta hydrolase fold gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2142 Tresu_2143 Tresu_2143 Tresu_2143 2293532 2294470 + Homoserine O-succinyltransferase COGs: COG1897 Homoserine trans-succinylase~HAMAP: Homoserine O-succinyltransferase~InterPro IPR005697~KEGG: pmo:Pmob_0733 homoserine O-succinyltransferase~PFAM: Homoserine O-succinyltransferase~PRIAM: Homoserine O-succinyltransferase~SPTR: Homoserine O-succinyltransferase%3B~TIGRFAM: Homoserine O-succinyltransferase~IMG reference gene:2504609092~PFAM: Homoserine O-succinyltransferase~TIGRFAM: homoserine O-succinyltransferase gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2143 Tresu_2144 Tresu_2144 Tresu_2144 2294489 2294743 + hypothetical protein KEGG: shi:Shel_18430 transcriptional regulator%2C TetR family~SPTR: Transcriptional regulator%3B~IMG reference gene:2504609093~PFAM: Bacterial regulatory proteins%2C tetR family gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2144 Tresu_2145 Tresu_2145 Tresu_2145 2295131 2296075 + DNA methylase N-4/N-6 domain protein COGs: COG0863 DNA modification methylase~InterPro IPR002941~KEGG: cyn:Cyan7425_0828 DNA methylase N-4/N-6 domain protein~PFAM: DNA methylase N-4/N-6~SPTR: DNA (Cytosine-5-)-methyltransferase%3B~IMG reference gene:2504609094~PFAM: DNA methylase gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2145 Tresu_2146 Tresu_2146 Tresu_2146 2296081 2297442 - Protein of unknown function DUF2130 COGs: COG4487 conserved hypothetical protein~InterPro IPR019219~KEGG: sga:GALLO_1165 hypothetical protein~PFAM: Protein of unknown function DUF2130~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609095~PFAM: Uncharacterized protein conserved in bacteria (DUF2130) gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2146 Tresu_2147 Tresu_2147 Tresu_2147 2297552 2298139 + Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119~KEGG: pgi:PG0864 multiple promoter invertase~PFAM: Resolvase%2C N-terminal~SMART: Resolvase%2C N-terminal~SPTR: Resolvase%2C N-terminal domain protein%3B~IMG reference gene:2504609096~PFAM: Resolvase%2C N terminal domain%3B Helix-turn-helix domain of resolvase gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2147 Tresu_2148 Tresu_2148 Tresu_2148 2298628 2299056 + hypothetical protein KEGG: dhd:Dhaf_2679 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609097 gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2148 Tresu_2149 Tresu_2149 Tresu_2149 2299060 2299245 - hypothetical protein IMG reference gene:2504609098 gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2149 Tresu_2150 Tresu_2150 Tresu_2150 2299331 2301415 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2270 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504609099~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2150 Tresu_2151 Tresu_2151 Tresu_2151 2301906 2303414 + IMP dehydrogenase COGs: COG0516 IMP dehydrogenase/GMP reductase~InterPro IPR000644:IPR001093~KEGG: cbe:Cbei_2114 inosine 5-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B Cystathionine beta-synthase%2C core~PRIAM: IMP dehydrogenase~SMART: Cystathionine beta-synthase%2C core~SPTR: Inosine-5'-monophosphate dehydrogenase%3B~IMG reference gene:2504609100~PFAM: CBS domain%3B IMP dehydrogenase / GMP reductase domain~TIGRFAM: inosine-5'-monophosphate dehydrogenase gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2151 Tresu_2152 Tresu_2152 Tresu_2152 2303460 2304686 + Adenylosuccinate synthetase COGs: COG0104 Adenylosuccinate synthase~HAMAP: Adenylosuccinate synthetase~InterPro IPR001114~KEGG: ssm:Spirs_2415 adenylosuccinate synthetase~PFAM: Adenylosuccinate synthetase~PRIAM: Adenylosuccinate synthase~SMART: Adenylosuccinate synthetase~SPTR: Adenylosuccinate synthetase%3B~TIGRFAM: Adenylosuccinate synthetase~IMG reference gene:2504609101~PFAM: Adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthase gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2152 Tresu_2153 Tresu_2153 Tresu_2153 2304763 2306112 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: vpa:VPA0061 hypothetical protein~PFAM: Multi antimicrobial extrusion protein~SPTR: Hypothetical membrane protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504609102~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2153 Tresu_2154 Tresu_2154 Tresu_2154 2306158 2306814 - Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: cts:Ctha_1646 haloacid dehalogenase domain-containing protein hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Haloacid dehalogenase domain protein hydrolase%3B~IMG reference gene:2504609103~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2154 Tresu_2155 Tresu_2155 Tresu_2155 2306829 2308121 - Carbohydrate kinase%2C FGGY COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484:IPR018485~KEGG: tde:TDE2722 carbhohydrate kinase~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~SPTR: Carhohydrate kinase%2C FGGY family%3B~IMG reference gene:2504609104~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2155 Tresu_2156 Tresu_2156 Tresu_2156 2308153 2309406 - ribose-phosphate pyrophosphokinase COGs: COG0462 Phosphoribosylpyrophosphate synthetase~InterPro IPR005946:IPR000836~KEGG: tde:TDE2723 phosphoribosylpyrophosphate synthetase~PFAM: Phosphoribosyltransferase~PRIAM: Ribose-phosphate diphosphokinase~SPTR: Phosphoribosylpyrophosphate synthetase%3B~TIGRFAM: Phosphoribosyl pyrophosphokinase~IMG reference gene:2504609105~PFAM: Phosphoribosyl transferase domain~TIGRFAM: ribose-phosphate pyrophosphokinase gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2156 Tresu_2157 Tresu_2157 Tresu_2157 2310060 2310914 + hypothetical protein KEGG: ssm:Spirs_1955 cell wall/surface repeat protein~SPTR: Cell wall/surface repeat protein%3B~IMG reference gene:2504609106~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt) gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2157 Tresu_2158 Tresu_2158 Tresu_2158 2311105 2312211 + Site-specific DNA-methyltransferase (adenine-specific) COGs: COG3392 Adenine-specific DNA methylase~InterPro IPR012327~KEGG: tde:TDE0706 adenine-specific DNA modification methyltransferase~PFAM: D12 class N6 adenine-specific DNA methyltransferase~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: Adenine-specific DNA modification methyltransferase%3B~IMG reference gene:2504609107~PFAM: D12 class N6 adenine-specific DNA methyltransferase gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2158 Tresu_2159 Tresu_2159 Tresu_2159 2312213 2313565 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: shi:Shel_18080 putative efflux protein%2C MATE family~PFAM: Multi antimicrobial extrusion protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein~IMG reference gene:2504609108~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2159 Tresu_2160 Tresu_2160 Tresu_2160 2313625 2314647 - branched-chain amino acid aminotransferase COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase~InterPro IPR005786:IPR001544~KEGG: eel:EUBELI_01912 branched-chain amino acid aminotransferase~PFAM: Aminotransferase%2C class IV~PRIAM: Branched-chain-amino-acid transaminase~SPTR: Branched-chain amino acid aminotransferase%3B~TIGRFAM: Branched-chain amino acid aminotransferase II~IMG reference gene:2504609109~PFAM: Aminotransferase class IV~TIGRFAM: branched-chain amino acid aminotransferase%2C group II gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2160 Tresu_2161 Tresu_2161 Tresu_2161 2314858 2316438 + hypothetical protein KEGG: coc:Coch_1917 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609110 gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2161 Tresu_2162 Tresu_2162 Tresu_2162 2316533 2317255 - hypothetical protein KEGG: bpb:bpr_I0885 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609111 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2162 Tresu_2163 Tresu_2163 Tresu_2163 2317724 2318755 + phosphate acetyltransferase COGs: COG0280 Phosphotransacetylase~InterPro IPR004614:IPR002505~KEGG: thx:Thet_1168 phosphate acetyltransferase~PFAM: Phosphate acetyl/butaryl transferase~PRIAM: Phosphate acetyltransferase~SPTR: Phosphate acetyltransferase%3B~TIGRFAM: Phosphate acetyltransferase~IMG reference gene:2504609113~PFAM: Phosphate acetyl/butaryl transferase~TIGRFAM: phosphate acetyltransferase gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2163 Tresu_2164 Tresu_2164 Tresu_2164 2318802 2319281 - small multi-drug export protein COGs: COG2426 membrane protein~InterPro IPR009577~KEGG: ere:EUBREC_1391 hypothetical protein~PFAM: Putative small multi-drug export~SPTR: Putative small multidrug export related protein%3B~IMG reference gene:2504609114~PFAM: Putative small multi-drug export protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2164 Tresu_2165 Tresu_2165 Tresu_2165 2319339 2319971 - hypothetical protein KEGG: eel:EUBELI_00743 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609115 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2165 Tresu_2166 Tresu_2166 Tresu_2166 2320013 2321629 - Lysyl-tRNA synthetase COGs: COG1384 Lysyl-tRNA synthetase (class I)~HAMAP: Lysyl-tRNA synthetase%2C class I%2C archaeal-type~InterPro IPR002904:IPR020754:IPR020756~KEGG: tde:TDE2553 lysyl-tRNA synthetase~PFAM: Lysyl-tRNA synthetase%2C class Ic~PRIAM: Lysine--tRNA ligase~SPTR: Lysyl-tRNA synthetase%3B~TIGRFAM: Lysyl-tRNA synthetase%2C class I~IMG reference gene:2504609116~PFAM: tRNA synthetases class I (K)~TIGRFAM: lysyl-tRNA synthetase%2C archaeal and spirochete gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2166 Tresu_2167 Tresu_2167 Tresu_2167 2321855 2323615 + phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterPro IPR005844~KEGG: tde:TDE0864 phosphohexose mutase family protein~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I~SPTR: Phosphohexose mutase family protein%3B~IMG reference gene:2504609117~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2167 Tresu_2168 Tresu_2168 Tresu_2168 2323619 2324458 - Cof-like hydrolase COGs: COG0561 hydrolase of the HAD superfamily~InterPro IPR000150:IPR006379:IPR013200~KEGG: ssm:Spirs_0338 Cof-like hydrolase~PFAM: HAD superfamily hydrolase-like%2C type 3~SPTR: Hydrolase%3B~TIGRFAM: Cof protein%3B HAD-superfamily hydrolase%2C subfamily IIB~IMG reference gene:2504609118~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily%3B HAD-superfamily hydrolase%2C subfamily IIB gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2168 Tresu_2169 Tresu_2169 Tresu_2169 2324536 2326287 - hypothetical protein KEGG: fsu:Fisuc_1057 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609119~PFAM: Archaeal ATPase gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2169 Tresu_2170 Tresu_2170 Tresu_2170 2326466 2327158 + hypothetical protein IMG reference gene:2504609120 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2170 Tresu_2171 Tresu_2171 Tresu_2171 2327219 2327338 + hypothetical protein IMG reference gene:2504609121 gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2171 Tresu_2172 Tresu_2172 Tresu_2172 2327411 2329150 - ATP-binding cassette protein%2C ChvD family COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR022374:IPR003439~KEGG: gsu:GSU1644 putative ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~TIGRFAM: ABC transporter ATP-binding protein%2C ChvD~IMG reference gene:2504609122~PFAM: ABC transporter~TIGRFAM: ATP-binding cassette protein%2C ChvD family gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2172 Tresu_2173 Tresu_2173 Tresu_2173 2329304 2330080 - hypothetical protein IMG reference gene:2504609123 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2173 Tresu_2174 Tresu_2174 Tresu_2174 2330491 2331282 - hypothetical protein IMG reference gene:2504609124 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2174 Tresu_2175 Tresu_2175 Tresu_2175 2331301 2331921 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609125~PFAM: CRISPR-associated protein (cas_TM1812) gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2175 Tresu_2176 Tresu_2176 Tresu_2176 2332355 2333485 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504609126~PFAM: Transposase DDE domain gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2176 Tresu_2177 Tresu_2177 Tresu_2177 2335544 2335777 + hypothetical protein manually curated~IMG reference gene:2504609127 gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2177 Tresu_2178 Tresu_2178 Tresu_2178 2335772 2336065 - CRISPR-associated protein Cas2 InterPro IPR021127~KEGG: cyj:Cyan7822_6171 CRISPR-associated protein Cas2~SPTR: CRISPR-associated protein Cas2%3B~TIGRFAM: CRISPR associated protein Cas2~IMG reference gene:2504609128~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2178 Tresu_2179 Tresu_2179 Tresu_2179 2336073 2336348 - CRISPR-associated protein Cas2 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR021127~KEGG: cph:Cpha266_2060 CRISPR-associated Cas2 family protein~SPTR: CRISPR-associated protein Cas2%3B~TIGRFAM: CRISPR associated protein Cas2~IMG reference gene:2504609129~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2179 Tresu_2180 Tresu_2180 Tresu_2180 2336345 2337445 - CRISPR-associated protein Cas1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR002729~KEGG: sat:SYN_02241 hypothetical protein~PFAM: CRISPR-associated protein Cas1~SPTR: Uncharacterized protein predicted to be involved in DNA repair%3B~TIGRFAM: CRISPR-associated protein Cas1~IMG reference gene:2504609130~PFAM: CRISPR associated protein Cas1~TIGRFAM: CRISPR-associated endonuclease Cas1 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2180 Tresu_2181 Tresu_2181 Tresu_2181 2337469 2337684 - hypothetical protein KEGG: cbf:CLI_A0018 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609131 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2181 Tresu_2182 Tresu_2182 Tresu_2182 2337681 2338172 - hypothetical protein KEGG: cbt:CLH_2380 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609132 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2182 Tresu_2183 Tresu_2183 Tresu_2183 2338172 2338390 - hypothetical protein KEGG: cbt:CLH_2381 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609133 gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2183 Tresu_2184 Tresu_2184 Tresu_2184 2338494 2338883 - hypothetical protein KEGG: mfs:MFS40622_0579 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609134 gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2184 Tresu_2185 Tresu_2185 Tresu_2185 2338895 2340016 - hypothetical protein KEGG: tye:THEYE_A0066 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609135~PFAM: Domain of unknown function (DUF1887) gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2185 Tresu_2186 Tresu_2186 Tresu_2186 2340029 2341501 - putative transcriptional regulator COGs: COG2865 transcriptional regulator protein~InterPro IPR007421~KEGG: mbu:Mbur_0507 divergent AAA ATPase~PFAM: ATPase%2C AAA-4~SPTR: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen%3B~IMG reference gene:2504609136~PFAM: Divergent AAA domain gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2186 Tresu_2187 Tresu_2187 Tresu_2187 2341522 2342601 - CRISPR-associated RAMP protein%2C Csm5 family COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR010173:IPR005537~KEGG: cni:Calni_1609 crispr-associated RAMP protein%2C csm5 family~PFAM: Protein of unknown function DUF324~SPTR: CRISPR-associated protein%2C Csm5 family%3B~TIGRFAM: CRISPR-associated protein%2C TM1807~IMG reference gene:2504609137~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm5 gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2187 Tresu_2188 Tresu_2188 Tresu_2188 2342598 2343479 - hypothetical protein COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~KEGG: msu:MS1648 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609138~TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm4 gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2188 Tresu_2189 Tresu_2189 Tresu_2189 2343493 2344161 - CRISPR-associated RAMP protein%2C Csm3 family COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)~InterPro IPR013412:IPR005537~KEGG: mth:MTH1080 hypothetical protein~PFAM: Protein of unknown function DUF324~SPTR: CRISPR-associated ramp protein%3B~TIGRFAM: CRISPR-associated RAMP Csm3~IMG reference gene:2504609139~PFAM: RAMP superfamily~TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm3 gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2189 Tresu_2190 Tresu_2190 Tresu_2190 2344180 2344698 - CRISPR-associated protein TM1810 domain protein InterPro IPR010149~KEGG: tye:THEYE_A0634 CRISPR-associated protein%2C Csm2 family~PFAM: CRISPR-associated protein%2C TM1810 C-terminal~SPTR: CRISPR-associated protein%2C Csm2 family%3B~TIGRFAM: CRISPR-associated protein%2C TM1810 C-terminal~IMG reference gene:2504609140~PFAM: Protein of unknown function (DUF310)~TIGRFAM: CRISPR type III-A/MTUBE-associated protein Csm2 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2190 Tresu_2191 Tresu_2191 Tresu_2191 2344791 2347163 - CRISPR-associated protein%2C Csm1 family COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs)~InterPro IPR013408~KEGG: tye:THEYE_A0633 CRISPR-associated protein%2C Csm1 family~SPTR: CRISPR-associated protein%2C Csm1 family%3B~TIGRFAM: CRISPR-associated protein Csm1~IMG reference gene:2504609141~PFAM: HD domain~TIGRFAM: CRISPR-associated protein Cas10/Csm1%2C subtype III-A/MTUBE gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2191 Tresu_2192 Tresu_2192 Tresu_2192 2347174 2348088 - crispr-associated protein cas6 KEGG: cni:Calni_1615 crispr-associated protein cas6~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609142~PFAM: Uncharacterized conserved protein (DUF2276) gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2192 Tresu_2193 Tresu_2193 Tresu_2193 2348291 2350471 - glycoside hydrolase family 35 COGs: COG1874 Beta-galactosidase~InterPro IPR001944~KEGG: bpb:bpr_I2006 beta-galactosidase Bga35B~PFAM: Glycoside hydrolase%2C family 35~SPTR: Beta-galactosidase%3B~IMG reference gene:2504609143~PFAM: Glycosyl hydrolases family 35 gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2193 Tresu_2194 Tresu_2194 Tresu_2194 2350790 2352328 + hypothetical protein IMG reference gene:2504609144 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2194 Tresu_2195 Tresu_2195 Tresu_2195 2353293 2354135 - ABC-type transporter%2C integral membrane subunit COGs: COG3833 ABC-type maltose transport systems permease component~InterPro IPR000515~KEGG: xce:Xcel_2154 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504609145~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2195 Tresu_2196 Tresu_2196 Tresu_2196 2354132 2355454 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: xce:Xcel_2153 fructose-bisphosphate aldolase~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504609146~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2196 Tresu_2197 Tresu_2197 Tresu_2197 2355607 2356806 - extracellular solute-binding protein family 1 COGs: COG2182 Maltose-binding periplasmic protein/domains~InterPro IPR006059~KEGG: xce:Xcel_2152 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504609147~PFAM: Bacterial extracellular solute-binding protein gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2197 Tresu_2198 Tresu_2198 Tresu_2198 2356857 2357855 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: bpb:bpr_I2007 LacI family transcriptional regulator~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504609148~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2198 Tresu_2199 Tresu_2199 Tresu_2199 2358097 2358756 + 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase~InterPro IPR000887~KEGG: aco:Amico_1665 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG/KHG aldolase~PRIAM: 2-dehydro-3-deoxy-phosphogluconate aldolase~SPTR: Entner-Doudoroff aldolase%3B~TIGRFAM: KDPG/KHG aldolase~IMG reference gene:2504609149~PFAM: KDPG and KHG aldolase~TIGRFAM: Entner-Doudoroff aldolase gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2199 Tresu_2200 Tresu_2200 Tresu_2200 2358830 2360185 - Glutamate dehydrogenase (NADP(+)) COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase~InterPro IPR006096:IPR006097~KEGG: apv:Apar_0610 glutamate dehydrogenase~PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal%3B Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain~PRIAM: Glutamate dehydrogenase (NADP(+))~SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal~SPTR: Glutamate dehydrogenase%2C NADP-specific%3B~IMG reference gene:2504609150~PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase%3B Glu/Leu/Phe/Val dehydrogenase%2C dimerisation domain gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2200 Tresu_2201 Tresu_2201 Tresu_2201 2360361 2360852 + hypothetical protein KEGG: amt:Amet_1379 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609151 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2201 Tresu_2202 Tresu_2202 Tresu_2202 2360922 2362637 + carbon starvation protein CstA COGs: COG1966 Carbon starvation protein predicted membrane protein~InterPro IPR003706~KEGG: bpb:bpr_I1010 carbon starvation protein CstA1~PFAM: Carbon starvation protein CstA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609152~PFAM: Carbon starvation protein CstA gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2202 Tresu_2203 Tresu_2203 Tresu_2203 2362855 2364012 - hypothetical protein KEGG: ssm:Spirs_0019 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609153 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2203 Tresu_2204 Tresu_2204 Tresu_2204 2364154 2365578 - 6-phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR000023~KEGG: tpp:TPASS_0108 diphosphate--fructose-6-phosphate 1-phosphotransferase~PFAM: Phosphofructokinase domain~PRIAM: 6-phosphofructokinase~SPTR: Phosphofructokinase%3B~IMG reference gene:2504609154~PFAM: Phosphofructokinase gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2204 Tresu_2205 Tresu_2205 Tresu_2205 2365721 2366302 + LemA family protein COGs: COG1704 conserved hypothetical protein~InterPro IPR007156~KEGG: tde:TDE0955 LemA family protein~PFAM: LemA~SPTR: LemA protein%3B~IMG reference gene:2504609155~PFAM: LemA family gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2205 Tresu_2206 Tresu_2206 Tresu_2206 2366318 2367115 + protein of unknown function DUF477 COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type~InterPro IPR007621~KEGG: tde:TDE0956 hypothetical protein~PFAM: Protein of unknown function DUF477~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609156~PFAM: Domain of unknown function (DUF477) gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2206 Tresu_2207 Tresu_2207 Tresu_2207 2367266 2368456 - response regulator receiver modulated CheB methylesterase COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~HAMAP: Signal transduction response regulator%2C chemotaxis%2C CheB~InterPro IPR001789:IPR000673:IPR008248~KEGG: tde:TDE0648 protein-glutamate methylesterase~PFAM: Signal transduction response regulator%2C chemotaxis%2C protein-glutamate methylesterase%3B Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain~SPTR: Chemotaxis response regulator protein-glutamate methylesterase%3B~IMG reference gene:2504609157~PFAM: CheB methylesterase%3B Response regulator receiver domain gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2207 Tresu_2208 Tresu_2208 Tresu_2208 2368486 2369307 - MCP methyltransferase%2C CheR-type COGs: COG1352 Methylase of chemotaxis methyl-accepting protein~InterPro IPR022641:IPR022642:IPR000780~KEGG: tde:TDE0647 chemotaxis protein methyltransferase~PFAM: MCP methyltransferase%2C CheR-type%2C SAM-binding domain%2C C-terminal%3B MCP methyltransferase%2C CheR-type%2C all-alpha domain%2C N-terminal~PRIAM: Protein-glutamate O-methyltransferase~SMART: MCP methyltransferase%2C CheR-type~SPTR: CheR methyltransferase%2C SAM binding domain%3B~IMG reference gene:2504609158~PFAM: CheR methyltransferase%2C SAM binding domain%3B CheR methyltransferase%2C all-alpha domain gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2208 Tresu_2209 Tresu_2209 Tresu_2209 2369433 2370434 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047:IPR002482~KEGG: tde:TDE2318 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504609159~PFAM: Peptidase family M23%3B LysM domain gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2209 Tresu_2210 Tresu_2210 Tresu_2210 2370443 2371105 - Ribosomal RNA large subunit methyltransferase E COGs: COG0293 23S rRNA methylase~HAMAP: Ribosomal RNA large subunit methyltransferase E~InterPro IPR002877:IPR015507~KEGG: tde:TDE1968 cell division protein FtsJ~PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ~SPTR: Ribosomal RNA large subunit methyltransferase E%3B~IMG reference gene:2504609160~PFAM: FtsJ-like methyltransferase~TIGRFAM: cell division protein FtsJ gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2210 Tresu_2211 Tresu_2211 Tresu_2211 2371241 2373178 + Long-chain-fatty-acid--CoA ligase.%2C o-succinylbenzoate--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: tde:TDE1742 AMP-binding enzyme family protein~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase.%2C o-succinylbenzoate--CoA ligase~SPTR: AMP-binding enzyme family protein%3B~IMG reference gene:2504609161~PFAM: AMP-binding enzyme gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2211 Tresu_2212 Tresu_2212 Tresu_2212 2373175 2374536 - Ribosomal small subunit Rsm22 InterPro IPR015324~KEGG: tde:TDE0081 hypothetical protein~PFAM: Ribosomal protein Rsm22%2C bacterial-type~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609162~PFAM: Mitochondrial small ribosomal subunit Rsm22 gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2212 Tresu_2213 Tresu_2213 Tresu_2213 2374536 2374871 - regulatory protein MerR InterPro IPR000551~KEGG: tde:TDE0082 MerR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR~SPTR: Transcriptional regulator%2C MerR family%3B~IMG reference gene:2504609163 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2213 Tresu_2214 Tresu_2214 Tresu_2214 2374871 2376424 - GTP-binding protein engA COGs: COG1160 GTPase~HAMAP: GTP-binding%2C EngA~InterPro IPR002917:IPR016484:IPR005225~KEGG: tde:TDE0083 GTP-binding protein EngA~PFAM: GTP-binding protein%2C HSR1-related~SPTR: GTP-binding protein engA%3B~TIGRFAM: GTP-binding%2C EngA%3B Small GTP-binding protein~IMG reference gene:2504609164~PFAM: GTPase of unknown function~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP-binding protein domain gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2214 Tresu_2215 Tresu_2215 Tresu_2215 2376440 2378149 - phosphoenolpyruvate-protein phosphotransferase COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component)~InterPro IPR008731:IPR008279:IPR000121:IPR006318~KEGG: ssm:Spirs_3210 phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilising enzyme%3B Phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal%3B PEP-utilising enzyme%2C mobile domain~PRIAM: Phosphoenolpyruvate--protein phosphotransferase~SPTR: Phosphoenolpyruvate-protein phosphotransferase%3B~TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase~IMG reference gene:2504609165~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme%2C N-terminal~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2215 Tresu_2216 Tresu_2216 Tresu_2216 2378275 2380245 + diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR001761:IPR000160~KEGG: dth:DICTH_1641 response regulator~PFAM: Diguanylate cyclase%2C predicted%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: Diguanylate cyclase%2C predicted~SPTR: Response regulator%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504609166~PFAM: GGDEF domain%3B family~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2216 Tresu_2217 Tresu_2217 Tresu_2217 2380242 2380736 + hypothetical protein IMG reference gene:2504609167 gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2217 Tresu_2218 Tresu_2218 Tresu_2218 2380923 2381690 + Lytic transglycosylase catalytic InterPro IPR008258~KEGG: ssm:Spirs_0274 lytic transglycosylase catalytic~PFAM: Lytic transglycosylase-like%2C catalytic~SPTR: Lytic transglycosylase catalytic%3B~IMG reference gene:2504609168~PFAM: Transglycosylase SLT domain gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2218 Tresu_2219 Tresu_2219 Tresu_2219 2381687 2382535 - biotin/acetyl-CoA-carboxylase ligase COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase~InterPro IPR004143:IPR004408~KEGG: tde:TDE0041 BirA bifunctional protein~PFAM: Biotin/lipoate A/B protein ligase~SPTR: BirA bifunctional protein%3B~TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase~IMG reference gene:2504609169~PFAM: Biotin/lipoate A/B protein ligase family~TIGRFAM: birA%2C biotin-[acetyl-CoA-carboxylase] ligase region gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2219 Tresu_2220 Tresu_2220 Tresu_2220 2382535 2383179 - nitrogen regulatory protein P-II InterPro IPR002187~KEGG: aoe:Clos_0657 hypothetical protein~SMART: Nitrogen regulatory protein PII~SPTR: Regulatory protein%2C P-II family%3B~IMG reference gene:2504609170~PFAM: Nitrogen regulatory protein P-II gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2220 Tresu_2221 Tresu_2221 Tresu_2221 2383176 2384696 - protein of unknown function DUF1538 InterPro IPR011435~KEGG: aoe:Clos_0656 hypothetical protein~PFAM: Protein of unknown function DUF1538~SPTR: Putative membrane protein%3B~IMG reference gene:2504609171~PFAM: Protein of unknown function (DUF1538) gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2221 Tresu_2222 Tresu_2222 Tresu_2222 2384984 2385469 - quorum-sensing autoinducer 2 (AI-2)%2C LuxS COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis~HAMAP: S-ribosylhomocysteinase (LuxS)~InterPro IPR003815~KEGG: ttj:TTHA1551 S-ribosylhomocysteinase~PFAM: S-ribosylhomocysteinase (LuxS)~PRIAM: S-ribosylhomocysteine lyase~SPTR: S-ribosylhomocysteine lyase%3B~IMG reference gene:2504609172~PFAM: S-Ribosylhomocysteinase (LuxS) gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2222 Tresu_2223 Tresu_2223 Tresu_2223 2385493 2386146 - Haloacid dehalogenase domain protein hydrolase COGs: COG0546 phosphatase~InterPro IPR005834~KEGG: csh:Closa_2198 HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Phosphoglycolate phosphatase%3B~IMG reference gene:2504609173~PFAM: haloacid dehalogenase-like hydrolase gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2223 Tresu_2224 Tresu_2224 Tresu_2224 2386146 2387504 - peptidase M18 aminopeptidase I COGs: COG1362 Aspartyl aminopeptidase~InterPro IPR001948~KEGG: eel:EUBELI_01164 aminopeptidase~PFAM: Peptidase M18~SPTR: M18 family aminopeptidase%3B~manually curated~IMG reference gene:2504609174~PFAM: Aminopeptidase I zinc metalloprotease (M18) gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2224 Tresu_2225 Tresu_2225 Tresu_2225 2387621 2388241 + transcriptional regulator%2C CarD family COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD~InterPro IPR003711~KEGG: sta:STHERM_c18970 transcriptional regulatory protein~PFAM: Transcription factor CarD~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504609175~PFAM: CarD-like/TRCF domain gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2225 Tresu_2226 Tresu_2226 Tresu_2226 2388234 2389415 + 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase~HAMAP: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~InterPro IPR001228:IPR003526~KEGG: tpp:TPASS_0512 hypothetical protein~PFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core%3B 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~SPTR: Bifunctional enzyme IspD/ispF%3B~TIGRFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~IMG reference gene:2504609176~PFAM: YgbB family%3B Uncharacterized protein family UPF0007~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%3B 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2226 Tresu_2227 Tresu_2227 Tresu_2227 2389466 2389738 + addiction module antitoxin%2C RelB/DinJ family InterPro IPR007337~KEGG: clo:HMPREF0868_1610 putative toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein~PFAM: RelB antitoxin~SPTR: Toxin-antitoxin system protein%3B~TIGRFAM: RelB antitoxin~IMG reference gene:2504609177~PFAM: RelB antitoxin~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2227 Tresu_2228 Tresu_2228 Tresu_2228 2389735 2390034 + addiction module toxin%2C RelE/StbE family COGs: COG3041 conserved hypothetical protein~InterPro IPR007712:IPR012753~KEGG: tde:TDE0505 hypothetical protein~PFAM: Plasmid stabilisation system~SPTR: RelE/StbE family addiction module toxin%3B~TIGRFAM: Addiction module toxin%2C RelE/StbE~IMG reference gene:2504609178~TIGRFAM: addiction module toxin component%2C YafQ family%3B addiction module toxin%2C RelE/StbE family gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2228 Tresu_2229 Tresu_2229 Tresu_2229 2390087 2390416 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE0440 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~manually curated~IMG reference gene:2504609179~PFAM: Helix-turn-helix gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2229 Tresu_2230 Tresu_2230 Tresu_2230 2390564 2391049 + hypothetical protein IMG reference gene:2504609180 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2230 Tresu_2231 Tresu_2231 Tresu_2231 2391132 2391482 + hypothetical protein IMG reference gene:2504609181 gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2231 Tresu_2232 Tresu_2232 Tresu_2232 2391537 2392043 + hypothetical protein IMG reference gene:2504609182 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2232 Tresu_2233 Tresu_2233 Tresu_2233 2392062 2392739 + hypothetical protein KEGG: vcj:VCD_000855 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609183 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2233 Tresu_2234 Tresu_2234 Tresu_2234 2392782 2393351 + hypothetical protein IMG reference gene:2504609184 gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2234 Tresu_2235 Tresu_2235 Tresu_2235 2393393 2394076 + hypothetical protein IMG reference gene:2504609185 gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2235 Tresu_2236 Tresu_2236 Tresu_2236 2394152 2395399 + hypothetical protein IMG reference gene:2504609186 gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2236 Tresu_2237 Tresu_2237 Tresu_2237 2395799 2396134 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ate:Athe_1027 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609187~PFAM: Helix-turn-helix gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2237 Tresu_2238 Tresu_2238 Tresu_2238 2396135 2396842 + protein of unknown function DUF955 InterPro IPR010359~KEGG: cce:Ccel_3077 protein of unknown function DUF955~PFAM: Protein of unknown function DUF955~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609188~PFAM: Domain of unknown function (DUF955) gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2238 Tresu_2239 Tresu_2239 Tresu_2239 2397105 2397872 + hypothetical protein KEGG: tde:TDE2734 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609189 gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2239 Tresu_2240 Tresu_2240 Tresu_2240 2397938 2398261 - helix-turn-helix domain protein InterPro IPR001387~KEGG: pjd:Pjdr2_4489 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%3B~IMG reference gene:2504609190~PFAM: Helix-turn-helix gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2240 Tresu_2241 Tresu_2241 Tresu_2241 2398414 2398620 + hypothetical protein IMG reference gene:2504609191 gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2241 Tresu_2242 Tresu_2242 Tresu_2242 2398622 2399062 + hypothetical protein IMG reference gene:2504609192 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2242 Tresu_2243 Tresu_2243 Tresu_2243 2399093 2399479 + hypothetical protein IMG reference gene:2504609193 gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2243 Tresu_2244 Tresu_2244 Tresu_2244 2399481 2399981 + hypothetical protein IMG reference gene:2504609194 gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2244 Tresu_2245 Tresu_2245 Tresu_2245 2400014 2400805 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: bha:BH0900 transcriptional regulator (enhancement of xylanase A production)~PFAM: Sulphatase-modifying factor~SPTR: XylR (Modular protein)%3B~IMG reference gene:2504609195~PFAM: Formylglycine-generating sulfatase enzyme gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2245 Tresu_2246 Tresu_2246 Tresu_2246 2400940 2401404 + aminoglycoside 3-N-acetyltransferase COGs: COG2746 Aminoglycoside N3'-acetyltransferase~InterPro IPR003679~KEGG: llc:LACR_D33 aminoglycoside N3'-acetyltransferase~PFAM: Aminoglycoside 3-N-acetyltransferase~SPTR: Aminoglycoside N3'-acetyltransferase%3B~IMG reference gene:2504609196~PFAM: Aminoglycoside 3-N-acetyltransferase gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2246 Tresu_2247 Tresu_2247 Tresu_2247 2401648 2402076 - PilT protein domain protein COGs: COG1487 nucleic acid-binding protein contains PIN domain~InterPro IPR002716~KEGG: cyh:Cyan8802_4589 PilT protein domain protein~PFAM: PilT protein%2C N-terminal~SPTR: PilT-like protein%3B~IMG reference gene:2504609197~PFAM: PIN domain gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2247 Tresu_2248 Tresu_2248 Tresu_2248 2402067 2402378 - prevent-host-death family protein InterPro IPR006442~TIGRFAM: Prevent-host-death protein~IMG reference gene:2504609198~PFAM: Phd_YefM~TIGRFAM: prevent-host-death family protein gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2248 Tresu_2249 Tresu_2249 Tresu_2249 2402880 2403404 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609199~PFAM: GIY-YIG catalytic domain gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2249 Tresu_2250 Tresu_2250 Tresu_2250 2403422 2403745 - hypothetical protein IMG reference gene:2504609200 gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2250 Tresu_2251 Tresu_2251 Tresu_2251 2403769 2403894 - hypothetical protein IMG reference gene:2504609201 gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2251 Tresu_2252 Tresu_2252 Tresu_2252 2404120 2404626 - hypothetical protein IMG reference gene:2504609202 gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2252 Tresu_2253 Tresu_2253 Tresu_2253 2404750 2406463 + pseudogene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2253 Tresu_2254 Tresu_2254 Tresu_2254 2406460 2407083 + hypothetical protein KEGG: mmq:MmarC5_1571 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609204 gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2254 Tresu_2255 Tresu_2255 Tresu_2255 2407122 2407232 + pseudogene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2255 Tresu_2256 Tresu_2256 Tresu_2256 2407564 2408444 + pseudogene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2256 Tresu_2257 Tresu_2257 Tresu_2257 2408462 2408827 - hypothetical protein KEGG: mgm:Mmc1_3049 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609207 gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2257 Tresu_2258 Tresu_2258 Tresu_2258 2408831 2408983 + pseudogene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2258 Tresu_2259 Tresu_2259 Tresu_2259 2408980 2409369 + pseudogene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2259 Tresu_2260 Tresu_2260 Tresu_2260 2409880 2410689 + GCN5-related N-acetyltransferase KEGG: cpy:Cphy_3204 GCN5-related N-acetyltransferase~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2504609210 gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2260 Tresu_2261 Tresu_2261 Tresu_2261 2410931 2411587 + regulatory protein TetR InterPro IPR001647~KEGG: sab:SAB2540c ica operon transcription regulator~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%3B~IMG reference gene:2504609211~PFAM: Bacterial regulatory proteins%2C tetR family gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2261 Tresu_2262 Tresu_2262 Tresu_2262 2411616 2412473 + protein of unknown function DUF1113 COGs: COG4905 membrane protein~InterPro IPR010540~KEGG: cce:Ccel_0197 protein of unknown function DUF1113~PFAM: Protein of unknown function DUF1113%2C TMEM229~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609212~PFAM: Protein of unknown function (DUF1113) gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2262 Tresu_2263 Tresu_2263 Tresu_2263 2412731 2413852 + Phosphoserine aminotransferase COGs: COG1932 Phosphoserine aminotransferase~HAMAP: Phosphoserine aminotransferase~InterPro IPR000192:IPR022278:IPR003248~KEGG: cbe:Cbei_0075 phosphoserine aminotransferase~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Phosphoserine transaminase~SPTR: Phosphoserine aminotransferase%3B~TIGRFAM: Phosphoserine aminotransferase%2C subgroup~IMG reference gene:2504609213~PFAM: Aminotransferase class-V~TIGRFAM: phosphoserine aminotransferase gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2263 Tresu_2264 Tresu_2264 Tresu_2264 2413868 2415046 + Phosphoglycerate dehydrogenase COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140:IPR002912~KEGG: sta:STHERM_c01490 hypothetical protein~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain%3B Amino acid-binding ACT~PRIAM: Phosphoglycerate dehydrogenase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609214~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B ACT domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2264 Tresu_2265 Tresu_2265 Tresu_2265 2415234 2415545 + protein of unknown function DUF156 COGs: COG1937 conserved hypothetical protein~InterPro IPR003735~KEGG: ere:EUBREC_0613 hypothetical protein~PFAM: Protein of unknown function DUF156~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609215~PFAM: Uncharacterised BCR%2C COG1937 gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2265 Tresu_2266 Tresu_2266 Tresu_2266 2415566 2415928 + hypothetical protein KEGG: eel:EUBELI_01465 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609216~PFAM: Heavy-metal-associated domain gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2266 Tresu_2267 Tresu_2267 Tresu_2267 2415980 2418499 + heavy metal translocating P-type ATPase COGs: COG2217 Cation transport ATPase~InterProIPR006121:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757:IPR006122~KEGG: eel:EUBELI_01464 Cu2+-exporting ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase~PRIAM: Copper-exporting ATPase~SPTR: Copper-(Or silver)-translocating P-type ATPase%3B~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter%3B Copper ion-binding~IMG reference gene:2504609217~PFAM: E1-E2 ATPase%3B Heavy-metal-associated domain%3B haloacid dehalogenase-like hydrolase~TIGRFAM: copper-(or silver)-translocating P-type ATPase%3B copper ion binding protein%3B heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2267 Tresu_2268 Tresu_2268 Tresu_2268 2418619 2421495 + peptidase M16 domain protein COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863~KEGG: gau:GAU_0129 hypothetical protein~PFAM: Peptidase M16%2C C-terminal%3B Peptidase M16%2C N-terminal~SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2504609218~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2268 Tresu_2269 Tresu_2269 Tresu_2269 2421407 2422990 - ATP-dependent DNA helicase%2C RecQ family COGs: COG0514 Superfamily II DNA helicase~InterPro IPR011545:IPR001650:IPR004589:IPR014001~KEGG: tde:TDE0435 ATP-dependent DNA helicase RecQ~PFAM: Helicase%2C C-terminal%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: ATP-dependent DNA helicase%2C RecQ family%3B~TIGRFAM: DNA helicase%2C ATP-dependent%2C RecQ type~IMG reference gene:2504609219~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent DNA helicase%2C RecQ family gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2269 Tresu_2270 Tresu_2270 Tresu_2270 2423128 2425218 - sodium/hydrogen exchanger COGs: COG0475 Kef-type K+ transport systems membrane components~InterPro IPR006153:IPR002178~KEGG: ssm:Spirs_3913 sodium/hydrogen exchanger~PFAM: Cation/H+ exchanger%3B Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: Sodium/hydrogen exchanger%3B~IMG reference gene:2504609220~PFAM: Sodium/hydrogen exchanger family%3B Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2~TIGRFAM: PTS system%2C fructose subfamily%2C IIA component gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2270 Tresu_2271 Tresu_2271 Tresu_2271 2425320 2426084 - Methyltransferase type 12 COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase~InterPro IPR013217~KEGG: tde:TDE2499 hypothetical protein~PFAM: Methyltransferase type 12~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609221~PFAM: ubiE/COQ5 methyltransferase family gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2271 Tresu_2272 Tresu_2272 Tresu_2272 2426133 2427122 + HPr kinase COGs: COG1493 Serine kinase of the HPr protein regulates carbohydrate metabolism~HAMAP: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase~InterPro IPR011126:IPR011104:IPR003755~KEGG: tpa:TP0591 HPr kinase/phosphorylase~PFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C C-terminal%3B Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C N-terminal~SPTR: HPr kinase/phosphorylase%3B~TIGRFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase~IMG reference gene:2504609222~PFAM: HPr Serine kinase N terminus%3B HPr Serine kinase C-terminal domain~TIGRFAM: Hpr(Ser) kinase/phosphatase gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2272 Tresu_2273 Tresu_2273 Tresu_2273 2427155 2427421 + Phosphotransferase system%2C phosphocarrier protein HPr COGs: COG1925 Phosphotransferase system HPr-related protein~InterPro IPR005698~KEGG: sta:STHERM_c21970 phosphocarrier protein HPr~PFAM: Phosphotransferase system%2C phosphocarrier HPr protein~SPTR: Phosphocarrier protein HPr%3B~TIGRFAM: Phosphotransferase system%2C phosphocarrier HPr protein~IMG reference gene:2504609223~PFAM: PTS HPr component phosphorylation site~TIGRFAM: Phosphotransferase System HPr (HPr) Family gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2273 Tresu_2274 Tresu_2274 Tresu_2274 2427425 2428039 + SOS-response transcriptional repressor%2C LexA COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase)~HAMAP: Peptidase S24%2C LexA repressor~InterPro IPR006199:IPR019759:IPR006200~KEGG: ssm:Spirs_4055 transcriptional repressor%2C LexA family~PFAM: LexA%2C DNA-binding domain%3B Peptidase S24/S26A/S26B%2C conserved region~SPTR: LexA repressor%3B~TIGRFAM: Peptidase S24%2C LexA repressor~IMG reference gene:2504609224~PFAM: LexA DNA binding domain%3B Peptidase S24-like~TIGRFAM: SOS regulatory protein LexA gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2274 Tresu_2275 Tresu_2275 Tresu_2275 2428041 2429057 + DNA polymerase III%2C delta subunit COGs: COG1466 DNA polymerase III delta subunit~InterPro IPR010372:IPR005790~KEGG: tde:TDE0729 hypothetical protein~PFAM: DNA polymerase III%2C delta~SPTR: Putative uncharacterized protein%3B~TIGRFAM: DNA polymerase III%2C delta subunit~IMG reference gene:2504609225~PFAM: DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2275 Tresu_2276 Tresu_2276 Tresu_2276 2429129 2429722 - ribosomal protein S4 COGs: COG0522 Ribosomal protein S4 and related protein~InterPro IPR001912:IPR002942:IPR005709~KEGG: vpr:Vpar_1453 ribosomal protein S4~PFAM: RNA-binding S4%3B Ribosomal protein S4/S9%2C N-terminal~SMART: RNA-binding S4~SPTR: Ribosomal protein S4%3B~TIGRFAM: Ribosomal protein S4%2C bacterial-type~IMG reference gene:2504609226~PFAM: Ribosomal protein S4/S9 N-terminal domain%3B S4 domain~TIGRFAM: ribosomal protein S4%2C bacterial/organelle type gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2276 Tresu_2277 Tresu_2277 Tresu_2277 2430101 2431003 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: tde:TDE0214 hypothetical protein~PFAM: Type IV pilus assembly PilZ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609227~PFAM: PilZ domain gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2277 Tresu_2278 Tresu_2278 Tresu_2278 2431021 2432175 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR001440:IPR013105:IPR019734~KEGG: tde:TDE0213 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504609228~PFAM: Coatomer epsilon subunit gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2278 Tresu_2279 Tresu_2279 Tresu_2279 2432182 2432634 - protein of unknown function DUF192 COGs: COG1430 conserved hypothetical protein~InterPro IPR003795~KEGG: coc:Coch_1289 protein of unknown function DUF192~PFAM: Protein of unknown function DUF192~SPTR: Lipoprotein%3B~IMG reference gene:2504609229~PFAM: Uncharacterized ACR%2C COG1430 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2279 Tresu_2280 Tresu_2280 Tresu_2280 2432638 2433183 - hypothetical protein KEGG: tde:TDE0066 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609230 gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2280 Tresu_2281 Tresu_2281 Tresu_2281 2433173 2434366 - putative transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: tde:TDE0067 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain~SPTR: Cyclic nucleotide-binding protein%3B~IMG reference gene:2504609231~PFAM: Cyclic nucleotide-binding domain gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2281 Tresu_2282 Tresu_2282 Tresu_2282 2434381 2435340 - UDP-N-acetylenolpyruvoylglucosamine reductase COGs: COG0812 UDP-N-acetylmuramate dehydrogenase~HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase~InterPro IPR006094:IPR011601:IPR003170~KEGG: tde:TDE0093 UDP-N-acetylenolpyruvoylglucosamine reductase%2C putative~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal%3B FAD linked oxidase%2C N-terminal~PRIAM: UDP-N-acetylmuramate dehydrogenase~SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase%3B~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~IMG reference gene:2504609232~PFAM: FAD binding domain%3B UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal domain~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2282 Tresu_2283 Tresu_2283 Tresu_2283 2435433 2436965 + cysteinyl-tRNA synthetase COGs: COG0215 Cysteinyl-tRNA synthetase~InterPro IPR015803~KEGG: tde:TDE0092 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase%2C class Ia~PRIAM: Cysteine--tRNA ligase~SPTR: Cysteinyl-tRNA synthetase%3B~TIGRFAM: Cysteinyl-tRNA synthetase%2C class Ia~IMG reference gene:2504609233~PFAM: tRNA synthetases class I (C) catalytic domain~TIGRFAM: cysteinyl-tRNA synthetase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2283 Tresu_2284 Tresu_2284 Tresu_2284 2437002 2437556 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterPro IPR007627:IPR013249:IPR014284~KEGG: tde:TDE0091 RNA polymerase sigma-24 factor%2C putative~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2~SPTR: RNA polymerase sigma-24 factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504609234~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2284 Tresu_2285 Tresu_2285 Tresu_2285 2437540 2438256 + hypothetical protein KEGG: tde:TDE0090 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609235 gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2285 Tresu_2286 Tresu_2286 Tresu_2286 2438258 2439967 + transglutaminase domain-containing protein COGs: COG1305 Transglutaminase-like protein~InterPro IPR002909:IPR002931~KEGG: tde:TDE0089 transglutaminase-like domain-containing protein~PFAM: Transglutaminase-like%3B Cell surface receptor IPT/TIG~SMART: Transglutaminase-like~SPTR: Transglutaminase-like domain protein%3B~IMG reference gene:2504609236~PFAM: Transglutaminase-like superfamily%3B IPT/TIG domain gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2286 Tresu_2287 Tresu_2287 Tresu_2287 2439987 2440718 + uridylate kinase COGs: COG0528 Uridylate kinase~InterPro IPR001048:IPR011818~KEGG: tde:TDE2085 uridylate kinase~PFAM: Aspartate/glutamate/uridylate kinase~PRIAM: UMP kinase~SPTR: Amino acid kinase family protein%3B~TIGRFAM: Uridylate kinase%2C archaeal/spirochete%2C putative~IMG reference gene:2504609237~PFAM: Amino acid kinase family~TIGRFAM: uridylate kinase%2C putative gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2287 Tresu_2288 Tresu_2288 Tresu_2288 2440721 2441299 + putative lipoprotein KEGG: tde:TDE0488 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504609238~PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2288 Tresu_2289 Tresu_2289 Tresu_2289 2441374 2442726 + Phosphoribosylamine--glycine ligase COGs: COG0151 Phosphoribosylamine-glycine ligase~HAMAP: Phosphoribosylglycinamide synthetase~InterPro IPR020562:IPR020561:IPR020560:IPR000115~KEGG: cac:CA_C1396 phosphoribosylamine--glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N-domain%3B Phosphoribosylglycinamide synthetase%2C C-domain~PRIAM: Phosphoribosylamine--glycine ligase~SPTR: Phosphoribosylamine--glycine ligase%3B~TIGRFAM: Phosphoribosylglycinamide synthetase~IMG reference gene:2504609239~PFAM: Phosphoribosylglycinamide synthetase%2C N domain%3B Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C C domain~TIGRFAM: phosphoribosylamine--glycine ligase gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2289 Tresu_2290 Tresu_2290 Tresu_2290 2442852 2443685 - Undecaprenyl-diphosphatase COGs: COG1968 Uncharacterized bacitracin resistance protein~HAMAP: Bacitracin resistance protein BacA~InterPro IPR003824~KEGG: tde:TDE0172 undecaprenyl pyrophosphate phosphatase~PFAM: Bacitracin resistance protein BacA~SPTR: Undecaprenyl-diphosphatase%3B~IMG reference gene:2504609240~PFAM: Bacitracin resistance protein BacA~TIGRFAM: undecaprenyl-diphosphatase UppP gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2290 Tresu_2291 Tresu_2291 Tresu_2291 2443824 2445275 + TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR003148:IPR006037~KEGG: tde:TDE0087 potassium transporter peripheral membrane component~PFAM: Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~SPTR: Potassium transporter peripheral membrane component%3B~IMG reference gene:2504609241~PFAM: TrkA-N domain%3B TrkA-C domain gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2291 Tresu_2292 Tresu_2292 Tresu_2292 2445285 2446727 + cation transporter COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: tde:TDE0088 trk system potassium uptake protein TrkH~PFAM: Cation transporter~SPTR: Trk system potassium uptake protein TrkH%3B~IMG reference gene:2504609242~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2292 Tresu_2293 Tresu_2293 Tresu_2293 2446978 2448474 - Propionyl-CoA carboxylase COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta)~InterPro IPR000022~KEGG: kol:Kole_1368 carboxyl transferase~PFAM: Carboxyl transferase~PRIAM: Propionyl-CoA carboxylase~SPTR: Carboxyl transferase%3B~IMG reference gene:2504609244~PFAM: Carboxyl transferase domain gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2293 Tresu_2294 Tresu_2294 Tresu_2294 2448606 2450228 - hypothetical protein IMG reference gene:2504609245 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2294 Tresu_2295 Tresu_2295 Tresu_2295 2450225 2451229 - HflC protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001107:IPR010200~KEGG: ssm:Spirs_2891 HflC protein~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: HflC protein%3B~TIGRFAM: HflC~IMG reference gene:2504609246~PFAM: SPFH domain / Band 7 family~TIGRFAM: HflC protein gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2295 Tresu_2296 Tresu_2296 Tresu_2296 2451213 2452190 - HflK protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001107:IPR010201~KEGG: tde:TDE1332 HflK protein%2C putative~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: HflK protein%2C putative%3B~TIGRFAM: HflK~IMG reference gene:2504609247~PFAM: SPFH domain / Band 7 family~TIGRFAM: HflK protein gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2296 Tresu_2297 Tresu_2297 Tresu_2297 2452725 2454071 + hypothetical protein IMG reference gene:2504609248 gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2297 Tresu_2298 Tresu_2298 Tresu_2298 2454360 2454651 + pseudogene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2298 Tresu_2299 Tresu_2299 Tresu_2299 2454655 2454960 + addiction module antidote protein COGs: COG3636 transcriptional regulator protein~InterPro IPR001387:IPR014057~KEGG: pph:Ppha_0898 putative transcriptional regulator~PFAM: Helix-turn-helix type 3~SPTR: Putative transcriptional regulator%3B~TIGRFAM: Addiction module antidote protein%2C HI1420~IMG reference gene:2504609250~PFAM: Helix-turn-helix~TIGRFAM: probable addiction module antidote protein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2299 Tresu_2300 Tresu_2300 Tresu_2300 2455073 2456299 - hypothetical protein IMG reference gene:2504609251 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2300 Tresu_2301 Tresu_2301 Tresu_2301 2456482 2457318 - Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1259 tetracycline resistance leader peptide~SPTR: Tetracycline resistance leader peptide%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504609252~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2301 Tresu_2302 Tresu_2302 Tresu_2302 2457379 2458194 - deoxycytidine deaminase-like protein COGs: COG0717 Deoxycytidine deaminase~KEGG: afn:Acfer_0591 deoxycytidine deaminase-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609253~PFAM: dUTPase gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2302 Tresu_2303 Tresu_2303 Tresu_2303 2458271 2459194 - PSP1 domain protein COGs: COG1774 Uncharacterized homolog of PSP1~InterPro IPR007557~KEGG: tde:TDE0113 tpl protein~PFAM: PSP1%2C C-terminal~SPTR: Tpl protein%3B~IMG reference gene:2504609254~PFAM: PSP1 C-terminal conserved region gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2303 Tresu_2304 Tresu_2304 Tresu_2304 2459223 2459765 - protein of unknown function DUF327 InterPro IPR005585~KEGG: ssm:Spirs_3188 protein of unknown function DUF327~PFAM: Protein of unknown function DUF327~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609255~PFAM: Protein of unknown function (DUF327) gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2304 Tresu_2305 Tresu_2305 Tresu_2305 2459767 2460183 - protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE0111 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609256~PFAM: Protein of unknown function%2C DUF583 gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2305 Tresu_2306 Tresu_2306 Tresu_2306 2460185 2461198 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: tde:TDE0110 M23/M37 peptidase domain-containing protein~PFAM: Peptidase M23~SPTR: M23/M37 peptidase domain protein%3B~IMG reference gene:2504609257~PFAM: Peptidase family M23 gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2306 Tresu_2307 Tresu_2307 Tresu_2307 2461469 2462254 + hydrolase%2C TatD family COGs: COG0084 Mg-dependent DNase~InterPro IPR001130:IPR015991~KEGG: tde:TDE2730 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~TIGRFAM: Deoxyribonuclease%2C TatD Mg-dependent%2C prokaryote~IMG reference gene:2504609258~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2307 Tresu_2308 Tresu_2308 Tresu_2308 2462251 2463261 + TIM-barrel protein%2C nifR3 family COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269:IPR004652~KEGG: tde:TDE2731 NifR3 family TIM-barrel protein~PFAM: tRNA-dihydrouridine synthase~SPTR: tRNA-dihydrouridine synthase%3B~TIGRFAM: tRNA-dihydrouridine synthase%2C TIM-barrel%2C NifR3~IMG reference gene:2504609259~PFAM: Dihydrouridine synthase (Dus)~TIGRFAM: putative TIM-barrel protein%2C nifR3 family gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2308 Tresu_2309 Tresu_2309 Tresu_2309 2463330 2464910 + hypothetical protein KEGG: tde:TDE0126 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609260 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2309 Tresu_2310 Tresu_2310 Tresu_2310 2464912 2466069 + diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: tde:TDE0125 GGDEF domain-containing protein~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: GGDEF domain protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504609261~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2310 Tresu_2311 Tresu_2311 Tresu_2311 2466066 2466689 + Peptidase S54%2C rhomboid domain protein COGs: COG0705 membrane protein~InterPro IPR022764~KEGG: tde:TDE0124 rhomboid family protein~PFAM: Peptidase S54%2C rhomboid domain~SPTR: Rhomboid family protein%3B~IMG reference gene:2504609262~PFAM: Rhomboid family gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2311 Tresu_2312 Tresu_2312 Tresu_2312 2466680 2467408 + hypothetical protein KEGG: tde:TDE0123 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609263 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2312 Tresu_2313 Tresu_2313 Tresu_2313 2467432 2467866 + hypothetical protein IMG reference gene:2504609264 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2313 Tresu_2314 Tresu_2314 Tresu_2314 2467957 2469528 + Phenylalanyl-tRNA synthetase alpha chain COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit~HAMAP: Phenylalanyl-tRNA synthetase alpha chain 2%2C bacterial/archaeal~InterPro IPR002319:IPR022917:IPR004529~KEGG: tde:TDE0109 phenylalanyl-tRNA synthetase subunit alpha~PFAM: Phenylalanyl-tRNA synthetase~SPTR: Phenylalanyl-tRNA synthetase alpha chain%3B~TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit~IMG reference gene:2504609265~PFAM: tRNA synthetases class II core domain (F)~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2314 Tresu_2315 Tresu_2315 Tresu_2315 2469583 2471652 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504609266~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2315 Tresu_2316 Tresu_2316 Tresu_2316 2471649 2472998 - DNA repair protein RadA COGs: COG1066 ATP-dependent serine protease~InterPro IPR004504:IPR003593~KEGG: tde:TDE2517 DNA repair protein RadA~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA repair protein radA%3B~TIGRFAM: DNA repair protein RadA~IMG reference gene:2504609267~PFAM: KaiC%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: DNA repair protein RadA gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2316 Tresu_2317 Tresu_2317 Tresu_2317 2473065 2473727 + CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR000462:IPR004570~KEGG: tde:TDE2572 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%3B~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~IMG reference gene:2504609268~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2317 Tresu_2318 Tresu_2318 Tresu_2318 2473901 2474275 + hypothetical protein IMG reference gene:2504609269 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2318 Tresu_2319 Tresu_2319 Tresu_2319 2474321 2475058 - hypothetical protein KEGG: cce:Ccel_1149 methyltransferase type 11~SPTR: Methyltransferase type 11%3B~IMG reference gene:2504609270 gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2319 Tresu_2320 Tresu_2320 Tresu_2320 2475145 2475684 + hypothetical protein KEGG: sro:Sros_7679 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609271 gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2320 Tresu_2321 Tresu_2321 Tresu_2321 2475730 2476566 - Thymidylate synthase thyX COGs: COG1351 alternative thymidylate synthase~HAMAP: Thymidylate synthase ThyX~InterPro IPR003669~KEGG: sta:STHERM_c22080 hypothetical protein~PFAM: Thymidylate synthase ThyX~SPTR: Thymidylate synthase thyX%3B~TIGRFAM: Thymidylate synthase ThyX~IMG reference gene:2504609272~PFAM: Thymidylate synthase complementing protein~TIGRFAM: thymidylate synthase%2C flavin-dependent gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2321 Tresu_2322 Tresu_2322 Tresu_2322 2476590 2478602 - hypothetical protein KEGG: ssm:Spirs_4105 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609273 gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2322 Tresu_2323 Tresu_2323 Tresu_2323 2478629 2479696 - hypothetical protein KEGG: tde:TDE2551 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609274~PFAM: Protein of unknown function (DUF2804) gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2323 Tresu_2324 Tresu_2324 Tresu_2324 2480026 2481267 - transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: clj:CLJU_c38530 transposase~PFAM: Transposase%2C IS116/IS110/IS902%3B Transposase%2C IS111A/IS1328/IS1533%2C N-terminal~SPTR: Transposase%3B~IMG reference gene:2504609275~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2324 Tresu_2325 Tresu_2325 Tresu_2325 2481487 2481846 - Uncharacterized protein family UPF0150 InterPro IPR005357:IPR008651~KEGG: lde:LDBND_0258 toxin-antitoxin system%2C antitoxin component%2C HicB family~PFAM: Uncharacterised protein family UPF0150%3B Uncharacterised protein family HicB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609276~PFAM: HicB family%3B Uncharacterised protein family (UPF0150) gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2325 Tresu_2326 Tresu_2326 Tresu_2326 2481833 2482081 - hypothetical protein KEGG: lbu:LBUL_0253 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609277 gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2326 Tresu_2327 Tresu_2327 Tresu_2327 2482197 2483384 + hypothetical protein IMG reference gene:2504609278~PFAM: Porin subfamily gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2327 Tresu_2328 Tresu_2328 Tresu_2328 2483666 2484940 - ATPase (AAA+ superfamily)-like protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: bln:Blon_0026 ATPase (AAA+ superfamily)-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609279 gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2328 Tresu_2329 Tresu_2329 Tresu_2329 2485406 2486758 - hypothetical protein IMG reference gene:2504609280 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2329 Tresu_2330 Tresu_2330 Tresu_2330 2487176 2488708 + RNA-metabolising metallo-beta-lactamase COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing~InterPro IPR001279:IPR011108~KEGG: tde:TDE1444 metallo-beta-lactamase family protein~PFAM: RNA-metabolising metallo-beta-lactamase%3B Beta-lactamase-like~SMART: Beta-lactamase-like~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504609281~PFAM: Metallo-beta-lactamase superfamily%3B RNA-metabolising metallo-beta-lactamase%3B Beta-Casp domain gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2330 Tresu_2331 Tresu_2331 Tresu_2331 2488714 2488926 + SlyX family protein InterPro IPR007236~PFAM: SlyX~IMG reference gene:2504609282~PFAM: SlyX gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2331 Tresu_2332 Tresu_2332 Tresu_2332 2488984 2489841 - Hly-III family protein COGs: COG1272 membrane protein hemolysin III homolog~InterPro IPR004254~KEGG: tde:TDE2317 hemolysin III~PFAM: Hly-III-related~SPTR: Hemolysin III%3B~IMG reference gene:2504609283~PFAM: Haemolysin-III related~TIGRFAM: channel protein%2C hemolysin III family gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2332 Tresu_2333 Tresu_2333 Tresu_2333 2490029 2491279 - ABC-type transporter%2C integral membrane subunit COGs: COG4214 ABC-type xylose transport system permease component~InterPro IPR001851~KEGG: csh:Closa_3806 inner-membrane translocator~PFAM: ABC transporter permease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609284~PFAM: Branched-chain amino acid transport system / permease component gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2333 Tresu_2334 Tresu_2334 Tresu_2334 2491304 2492836 - Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: bpb:bpr_I1174 xylose ABC transporter ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609285~PFAM: ABC transporter gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2334 Tresu_2335 Tresu_2335 Tresu_2335 2492922 2493983 - putative solute-binding component of ABC transporter COGs: COG4213 ABC-type xylose transport system periplasmic component~KEGG: cpy:Cphy_1585 putative solute-binding component of ABC transporter~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609286 gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2335 Tresu_2336 Tresu_2336 Tresu_2336 2494326 2495615 - Enolase COGs: COG0148 Enolase~HAMAP: Enolase~InterPro IPR020811:IPR020810:IPR000941~KEGG: ppn:Palpr_1047 enolase~PFAM: Enolase%2C C-terminal%3B Enolase%2C N-terminal~PRIAM: Phosphopyruvate hydratase~SPTR: Enolase 2%3B~TIGRFAM: Enolase~IMG reference gene:2504609287~PFAM: Enolase%2C N-terminal domain%3B Enolase%2C C-terminal TIM barrel domain~TIGRFAM: phosphopyruvate hydratase gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2336 Tresu_2337 Tresu_2337 Tresu_2337 2495797 2497089 + aminotransferase class I and II COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: ssm:Spirs_1023 aminotransferase class I and II~PFAM: Aminotransferase%2C class I/classII~SPTR: Aminotransferase class I and II%3B~IMG reference gene:2504609288~PFAM: Aminotransferase class I and II gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2337 Tresu_2338 Tresu_2338 Tresu_2338 2497073 2498338 + putative lipoprotein KEGG: tde:TDE2185 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504609289 gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2338 Tresu_2339 Tresu_2339 Tresu_2339 2498435 2498836 + hypothetical protein KEGG: tde:TDE1987 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609290 gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2339 Tresu_2340 Tresu_2340 Tresu_2340 2498840 2500195 - Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680~KEGG: pcu:pc0149 putative arsenical pump membrane protein~PFAM: Divalent ion symporter~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609291~PFAM: Citrate transporter gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2340 Tresu_2341 Tresu_2341 Tresu_2341 2500212 2502329 - Monosaccharide-transporting ATPase COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR003439:IPR003339:IPR003593~KEGG: bll:BLJ_1432 fused ATP-binding protein and permease of ABC transporter~PFAM: ABC transporter-like%3B Cobalt transport protein~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Cobalt ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504609292~PFAM: ABC transporter%3B Cobalt transport protein gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2341 Tresu_2342 Tresu_2342 Tresu_2342 2502332 2503006 - phosphodiesterase%2C MJ0936 family COGs: COG0622 phosphoesterase~InterPro IPR004843:IPR000979~KEGG: tde:TDE1578 phosphoesterase%2C putative~PFAM: Metallo-dependent phosphatase~SPTR: Phosphoesterase%2C putative%3B~TIGRFAM: Phosphodiesterase MJ0936~IMG reference gene:2504609293~PFAM: Calcineurin-like phosphoesterase~TIGRFAM: phosphoesterase%2C MJ0936 family gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2342 Tresu_2343 Tresu_2343 Tresu_2343 2503008 2503778 - hypothetical protein IMG reference gene:2504609294 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2343 Tresu_2344 Tresu_2344 Tresu_2344 2503882 2504760 - hypothetical protein KEGG: tde:TDE1324 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609295~PFAM: FecR protein gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2344 Tresu_2345 Tresu_2345 Tresu_2345 2504785 2505975 - hypothetical protein KEGG: tde:TDE1327 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609296 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2345 Tresu_2346 Tresu_2346 Tresu_2346 2505977 2506447 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609297 gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2346 Tresu_2347 Tresu_2347 Tresu_2347 2506466 2509366 + adenylate/guanylate cyclase with Chase sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR007890:IPR001054~KEGG: tde:TDE0932 adenylate/guanylate cyclase catalytic domain-containing protein~PFAM: CHASE2%3B Adenylyl cyclase class-3/4/guanylyl cyclase~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate/guanylate cyclase catalytic domain protein%3B~IMG reference gene:2504609298~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B CHASE2 domain gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2347 Tresu_2348 Tresu_2348 Tresu_2348 2509512 2510342 - hypothetical protein KEGG: cfa:487849 dentin sialophosphoprotein~SPTR: Vitellogenin 2a%3B~IMG reference gene:2504609299 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2348 Tresu_2349 Tresu_2349 Tresu_2349 2510692 2512200 + L-fucose isomerase COGs: COG2407 L-fucose isomerase and related protein~InterPro IPR015888~KEGG: cbe:Cbei_4681 L-fucose isomerase related protein~PFAM: L-fucose isomerase-like%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609300~PFAM: L-fucose isomerase%2C C-terminal domain gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2349 Tresu_2350 Tresu_2350 Tresu_2350 2512290 2513006 - L-ribulose-5-phosphate 4-epimerase COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase~InterPro IPR001303~KEGG: ssm:Spirs_3430 class II aldolase/adducin family protein~PFAM: Class II aldolase/adducin%2C N-terminal~PRIAM: L-ribulose-5-phosphate 4-epimerase~SPTR: Class II aldolase/adducin family protein%3B~IMG reference gene:2504609301~PFAM: Class II Aldolase and Adducin N-terminal domain~TIGRFAM: L-ribulose-5-phosphate 4-epimerase gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2350 Tresu_2351 Tresu_2351 Tresu_2351 2513181 2514779 - Carbohydrate kinase%2C FGGY COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484~KEGG: pru:PRU_0419 carbohydrate kinase domain-containing protein~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal~SPTR: Ribulokinase%3B~IMG reference gene:2504609302~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2351 Tresu_2352 Tresu_2352 Tresu_2352 2515007 2515936 + sugar ABC transporter substrate-binding protein COGs: COG1879 ABC-type sugar transport system periplasmic component~KEGG: bpb:bpr_III244 sugar ABC transporter substrate-binding protein~SPTR: Sugar ABC transporter substrate-binding protein%3B~IMG reference gene:2504609303~PFAM: family gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2352 Tresu_2353 Tresu_2353 Tresu_2353 2516062 2517576 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: bpb:bpr_III243 sugar ABC transporter ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609304~PFAM: ABC transporter gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2353 Tresu_2354 Tresu_2354 Tresu_2354 2517573 2518667 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: bpb:bpr_III242 sugar ABC transporter permease~PFAM: ABC transporter permease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609305~PFAM: Branched-chain amino acid transport system / permease component gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2354 Tresu_2355 Tresu_2355 Tresu_2355 2518668 2519717 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: bpb:bpr_III241 sugar ABC transporter permease~PFAM: ABC transporter permease~SPTR: Monosaccharide ABC transporter membrane protein%2C CUT2 family (TC 3.A.1.2.-)%3B~IMG reference gene:2504609306~PFAM: Branched-chain amino acid transport system / permease component gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2355 Tresu_2356 Tresu_2356 Tresu_2356 2519983 2520768 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR000005:IPR018060~KEGG: ccb:Clocel_0699 transcriptional regulator%2C AraC family~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504609307~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2356 Tresu_2357 Tresu_2357 Tresu_2357 2520839 2521699 - flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001029~KEGG: tde:TDE1004 flagellar filament core protein~PFAM: Flagellin%2C D0/D1 domain~SPTR: Flagellar filament 33 kDa core protein%3B~IMG reference gene:2504609308~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2357 Tresu_2358 Tresu_2358 Tresu_2358 2521838 2522350 - hypothetical protein KEGG: tde:TDE0199 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609309 gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2358 Tresu_2359 Tresu_2359 Tresu_2359 2522377 2523315 + transcriptional regulator with cupin sensor%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR013096:IPR000005:IPR018060~KEGG: cpy:Cphy_3156 AraC family transcriptional regulator~PFAM: HTH transcriptional regulator%2C AraC%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504609310~PFAM: Cupin domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2359 Tresu_2360 Tresu_2360 Tresu_2360 2523309 2524499 + phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase~InterPro IPR003382:IPR007085:IPR005252~KEGG: csh:Closa_2345 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~PFAM: DNA/pantothenate metabolism flavoprotein%2C C-terminal%3B Flavoprotein~PRIAM: Phosphopantothenate--cysteine ligase~SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase%2C prokaryotic%3B~TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase~IMG reference gene:2504609311~PFAM: DNA / pantothenate metabolism flavoprotein%3B Flavoprotein~TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase%2C prokaryotic gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2360 Tresu_2361 Tresu_2361 Tresu_2361 2524511 2525320 + MscS Mechanosensitive ion channel COGs: COG3264 Small-conductance mechanosensitive channel~InterPro IPR006685~KEGG: tde:TDE2295 mechanosensitive ion channel family protein~PFAM: Mechanosensitive ion channel MscS~SPTR: Mechanosensitive ion channel family protein%3B~IMG reference gene:2504609312~PFAM: Mechanosensitive ion channel gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2361 Tresu_2362 Tresu_2362 Tresu_2362 2525372 2525857 + hypothetical protein IMG reference gene:2504609313 gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2362 Tresu_2363 Tresu_2363 Tresu_2363 2525906 2527036 + hypothetical protein KEGG: tde:TDE2070 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609314 gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2363 Tresu_2364 Tresu_2364 Tresu_2364 2527033 2528577 - ABC-type transporter%2C periplasmic subunit COGs: COG4166 ABC-type oligopeptide transport system periplasmic component~InterPro IPR000914~KEGG: tde:TDE2049 solute-binding family 5 protein~PFAM: Bacterial extracellular solute-binding protein%2C family 5~SPTR: Bacterial extracellular solute-binding proteins%2C family 5%3B~IMG reference gene:2504609315~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2364 Tresu_2365 Tresu_2365 Tresu_2365 2528596 2530002 - hypothetical protein KEGG: tde:TDE2048 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609316 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2365 Tresu_2366 Tresu_2366 Tresu_2366 2530164 2531066 - phospholipid/glycerol acyltransferase InterPro IPR002123~KEGG: tde:TDE2222 hypothetical protein~SMART: Phospholipid/glycerol acyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609317~PFAM: Acyltransferase gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2366 Tresu_2367 Tresu_2367 Tresu_2367 2536515 2537237 - hypothetical protein KEGG: tde:TDE1642 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609322 gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2367 Tresu_2368 Tresu_2368 Tresu_2368 2537250 2537489 - Uncharacterized conserved protein UCP037246 COGs: COG4443 conserved hypothetical protein~InterPro IPR017154~KEGG: clj:CLJU_c06010 hypothetical protein~PFAM: Uncharacterised conserved protein UCP037246~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609323~PFAM: Uncharacterized protein conserved in bacteria (DUF2128) gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2368 Tresu_2369 Tresu_2369 Tresu_2369 2537770 2538768 + hypothetical protein KEGG: vcn:VOLCADRAFT_108795 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2504609324 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2369 Tresu_2370 Tresu_2370 Tresu_2370 2538768 2539460 + outer membrane protein KEGG: tpp:TPASS_0769 outer membrane protein~SPTR: Outer membrane protein%3B~IMG reference gene:2504609325 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2370 Tresu_2371 Tresu_2371 Tresu_2371 2539457 2540047 - NUDIX hydrolase InterPro IPR000086~KEGG: tde:TDE0010 MutT/NUDIX family protein~PFAM: NUDIX hydrolase domain~SPTR: MutT/nudix family protein%3B~IMG reference gene:2504609326~PFAM: NUDIX domain gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2371 Tresu_2372 Tresu_2372 Tresu_2372 2540124 2540948 + hypothetical protein KEGG: tde:TDE0009 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609327 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2372 Tresu_2373 Tresu_2373 Tresu_2373 2541079 2542920 - Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains~HAMAP: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~InterPro IPR000583:IPR001347:IPR005855~KEGG: tit:Thit_1906 glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: Glutamine amidotransferase%2C class-II%3B Sugar isomerase (SIS)~PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing)~SPTR: Glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing%3B~TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~IMG reference gene:2504609328~PFAM: SIS domain%3B Glutamine amidotransferases class-II~TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2373 Tresu_2374 Tresu_2374 Tresu_2374 2543251 2544492 + hypothetical protein IMG reference gene:2504609329 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2374 Tresu_2375 Tresu_2375 Tresu_2375 2544482 2545126 - endonuclease III COGs: COG0177 EndoIII-related endonuclease~InterPro IPR003265:IPR003651:IPR005759:IPR003583~KEGG: rpe:RPE_0488 endonuclease III~PFAM: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SMART: HhH-GPD domain%3B Helix-hairpin-helix DNA-binding motif%2C class 1%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~SPTR: DNA-(Apurinic or apyrimidinic site) lyase / endonuclease III%3B~TIGRFAM: Endonuclease III/Nth~IMG reference gene:2504609330~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Iron-sulfur binding domain of endonuclease III%3B Helix-hairpin-helix motif~TIGRFAM: endonuclease III gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2375 Tresu_2376 Tresu_2376 Tresu_2376 2545128 2546306 - S-adenosylmethionine synthase COGs: COG0192 S-adenosylmethionine synthetase~HAMAP: S-adenosylmethionine synthetase~InterPro IPR022628:IPR022629:IPR022630:IPR002133~KEGG: tde:TDE2470 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase%2C C-terminal%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal~PRIAM: Methionine adenosyltransferase~SPTR: S-adenosylmethionine synthase%3B~TIGRFAM: S-adenosylmethionine synthetase~IMG reference gene:2504609331~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal domain~TIGRFAM: S-adenosylmethionine synthetase gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2376 Tresu_2377 Tresu_2377 Tresu_2377 2546861 2547169 + glycoside hydrolase family 13 domain protein InterPro IPR004193~KEGG: dol:Dole_0850 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal~SPTR: Glycoside hydrolase%2C family 13-like protein%3B~IMG reference gene:2504609332~PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain) gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2377 Tresu_2378 Tresu_2378 Tresu_2378 2547315 2548295 + NADP-dependent oxidoreductase domain protein COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR023210~KEGG: pru:PRU_1473 aldo/keto reductase family oxidoreductase~PFAM: NADP-dependent oxidoreductase domain~SPTR: Oxidoreductase%2C aldo/keto reductase family%3B~IMG reference gene:2504609333~PFAM: Aldo/keto reductase family gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2378 Tresu_2379 Tresu_2379 Tresu_2379 2548324 2548566 + hypothetical protein IMG reference gene:2504609334 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2379 Tresu_2380 Tresu_2380 Tresu_2380 2548508 2549905 + hypothetical protein IMG reference gene:2504609335 gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2380 Tresu_2381 Tresu_2381 Tresu_2381 2550126 2551703 - ABC transporter related protein COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA~InterPro IPR003439:IPR003593~KEGG: gbm:Gbem_1570 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504609336~PFAM: ABC transporter gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2381 Tresu_2382 Tresu_2382 Tresu_2382 2551726 2552619 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: gbm:Gbem_2757 DNA-binding transcriptional regulator IlvY~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~SPTR: Helix-turn-helix transcriptional regulator%2C IlvY family%3B~IMG reference gene:2504609337~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2382 Tresu_2383 Tresu_2383 Tresu_2383 2552698 2553522 + hypothetical protein KEGG: ssm:Spirs_2694 YD repeat-containing protein~SPTR: YD repeat protein%3B~IMG reference gene:2504609338 gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2383 Tresu_2384 Tresu_2384 Tresu_2384 2553655 2554785 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504609339~PFAM: Transposase DDE domain gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2384 Tresu_2385 Tresu_2385 Tresu_2385 2554935 2556023 + Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR000092~KEGG: tde:TDE1537 polyprenyl synthetase family protein~PFAM: Polyprenyl synthetase~SPTR: Polyprenyl synthetase family protein%3B~IMG reference gene:2504609340~PFAM: Polyprenyl synthetase gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2385 Tresu_2386 Tresu_2386 Tresu_2386 2556016 2556540 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR013105:IPR019734~KEGG: tde:TDE1536 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504609341~PFAM: Tetratricopeptide repeat gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2386 Tresu_2387 Tresu_2387 Tresu_2387 2556561 2556971 + hypothetical protein IMG reference gene:2504609342~PFAM: Positive regulator of sigma(E)%2C RseC/MucC gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2387 Tresu_2388 Tresu_2388 Tresu_2388 2556979 2557539 + protein of unknown function DUF1239 InterPro IPR010664~KEGG: tde:TDE0646 hypothetical protein~PFAM: Lipopolysccharide assembly%2C LptC-related~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609343~PFAM: Protein of unknown function (DUF1239) gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2388 Tresu_2389 Tresu_2389 Tresu_2389 2557529 2558257 + OstA family protein InterPro IPR005653~KEGG: tde:TDE0645 hypothetical protein~PFAM: Organic solvent tolerance-like%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609344~PFAM: OstA-like protein gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2389 Tresu_2390 Tresu_2390 Tresu_2390 2558241 2558987 + Sulfate-transporting ATPase COGs: COG1137 ABC-type (unclassified) transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tde:TDE0644 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504609345~PFAM: ABC transporter gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2390 Tresu_2391 Tresu_2391 Tresu_2391 2559843 2560821 - pseudogene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2391 Tresu_2392 Tresu_2392 Tresu_2392 2560944 2561546 - Redox-sensing transcriptional repressor rex COGs: COG2344 AT-rich DNA-binding protein~HAMAP: Transcriptional repressor%2C redox-sensing%2C Rex~InterPro IPR003781:IPR022876~KEGG: ooe:OEOE_1398 redox-sensing transcriptional repressor REX~PFAM: CoA-binding~SPTR: Putative redox-sensing transcriptional repressor rex%3B~IMG reference gene:2504609352~PFAM: CoA binding domain%3B Putative DNA-binding protein N-terminus gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2392 Tresu_2393 Tresu_2393 Tresu_2393 2561615 2562616 + Endonuclease/exonuclease/phosphatase InterPro IPR005135~KEGG: ssm:Spirs_3694 endonuclease/exonuclease/phosphatase~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: Endonuclease/exonuclease/phosphatase%3B~IMG reference gene:2504609353~PFAM: Endonuclease/Exonuclease/phosphatase family gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2393 Tresu_2394 Tresu_2394 Tresu_2394 2562613 2563782 - major facilitator superfamily MFS_1 COGs: COG0738 Fucose permease~InterPro IPR011701~KEGG: bhy:BHWA1_01067 major facilitator superfamily MFS 1~PFAM: Major facilitator superfamily MFS-1~SPTR: Major facilitator superfamily protein%3B~IMG reference gene:2504609354~PFAM: Major Facilitator Superfamily gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2394 Tresu_2395 Tresu_2395 Tresu_2395 2563925 2566150 + Radical SAM domain protein InterPro IPR007197:IPR006638~KEGG: fjo:Fjoh_4972 radical SAM domain-containing protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504609355 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2395 Tresu_2396 Tresu_2396 Tresu_2396 2566173 2566949 - RNA methyltransferase%2C TrmH family%2C group 3 COGs: COG0566 rRNA methylase~InterPro IPR001537:IPR004441~KEGG: tde:TDE1443 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%2C group 3%3B~TIGRFAM: RNA methyltransferase TrmH%2C group 3~IMG reference gene:2504609356~PFAM: SpoU rRNA Methylase family~TIGRFAM: rRNA methylase%2C putative%2C group 3 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2396 Tresu_2397 Tresu_2397 Tresu_2397 2567196 2567699 - SEC-C motif domain protein COGs: COG3012 conserved hypothetical protein~InterPro IPR004027~KEGG: dal:Dalk_1685 sec-C motif domain protein~PFAM: SEC-C motif~SPTR: SEC-C domain protein%3B~IMG reference gene:2504609357~PFAM: SEC-C motif gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2397 Tresu_2398 Tresu_2398 Tresu_2398 2567775 2569016 - Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: ccu:Ccur_02550 phenylacetate-CoA ligase~PFAM: AMP-dependent synthetase/ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609358~PFAM: AMP-binding enzyme gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2398 Tresu_2399 Tresu_2399 Tresu_2399 2569013 2569597 - Indolepyruvate ferredoxin oxidoreductase COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit~InterPro IPR019752~KEGG: mvn:Mevan_1326 indolepyruvate oxidoreductase subunit B~PFAM: Pyruvate/ketoisovalerate oxidoreductase%2C catalytic domain~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609359~PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase~TIGRFAM: 2-oxoacid:acceptor oxidoreductase%2C gamma subunit%2C pyruvate/2-ketoisovalerate family%3B indolepyruvate ferredoxin oxidoreductase%2C beta subunit gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2399 Tresu_2400 Tresu_2400 Tresu_2400 2569609 2571435 - indolepyruvate ferredoxin oxidoreductase%2C alpha subunit COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits~InterPro IPR002880:IPR011766:IPR001450:IPR017721~KEGG: cce:Ccel_1389 indolepyruvate ferredoxin oxidoreductase%2C alpha subunit~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding%3B Pyruvate flavodoxin/ferredoxin oxidoreductase%2C N-terminal%3B 4Fe-4S binding domain~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: Indolepyruvate ferredoxin oxidoreductase%2C alpha subunit%3B~TIGRFAM: Indolepyruvate ferredoxin oxidoreductase%2C alpha subunit~IMG reference gene:2504609360~PFAM: domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C alpha subunit gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2400 Tresu_2401 Tresu_2401 Tresu_2401 2571573 2572004 - hypothetical protein IMG reference gene:2504609361 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2401 Tresu_2402 Tresu_2402 Tresu_2402 2572213 2573883 + Peptidoglycan-binding lysin domain protein InterPro IPR018392:IPR002482~KEGG: ssm:Spirs_3826 peptidoglycan-binding lysin domain protein~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: Peptidoglycan-binding lysin domain protein%3B~IMG reference gene:2504609362~PFAM: Hsp70 protein%3B LysM domain gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2402 Tresu_2403 Tresu_2403 Tresu_2403 2573914 2575950 + Lytic transglycosylase catalytic COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains)~InterPro IPR008258~KEGG: tpp:TPASS_0043 possible soluble lytic transglycosylase~PFAM: Lytic transglycosylase-like%2C catalytic~SPTR: Soluble lytic transglycosylase%2C putative%3B~IMG reference gene:2504609363~PFAM: Transglycosylase SLT domain gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2403 Tresu_2404 Tresu_2404 Tresu_2404 2576027 2577757 + sodium/hydrogen exchanger COGs: COG0475 Kef-type K+ transport systems membrane components~InterPro IPR006153:IPR000644~KEGG: tde:TDE1412 sodium/hydrogen exchanger family protein~PFAM: Cation/H+ exchanger%3B Cystathionine beta-synthase%2C core~SPTR: Sodium/hydrogen exchanger family protein%3B~IMG reference gene:2504609364~PFAM: CBS domain%3B Sodium/hydrogen exchanger family gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2404 Tresu_2405 Tresu_2405 Tresu_2405 2577832 2578068 + nitrogen-fixing NifU domain-containing protein COGs: COG0694 Thioredoxin-like protein and domains~InterPro IPR001075~KEGG: ssm:Spirs_4302 nitrogen-fixing NifU domain protein~PFAM: NIF system FeS cluster assembly%2C NifU%2C C-terminal~SPTR: Nitrogen-fixing NifU domain protein%3B~IMG reference gene:2504609365~PFAM: NifU-like domain gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2405 Tresu_2406 Tresu_2406 Tresu_2406 2578072 2578617 + Peptidylprolyl isomerase COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2~InterPro IPR001179~KEGG: noc:Noc_1086 peptidylprolyl isomerase%2C FKBP-type~PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~PRIAM: Peptidylprolyl isomerase~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2504609366~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2406 Tresu_2407 Tresu_2407 Tresu_2407 2578614 2579189 - Shikimate kinase COGs: COG0703 Shikimate kinase~HAMAP: Shikimate kinase~InterPro IPR000623~KEGG: sta:STHERM_c05910 shikimate kinase~PFAM: Shikimate kinase~SPTR: Shikimate kinase%3B~IMG reference gene:2504609367~PFAM: Shikimate kinase gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2407 Tresu_2408 Tresu_2408 Tresu_2408 2579193 2579915 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase COGs: COG0313 methyltransferase~InterPro IPR000878~KEGG: bvu:BVU_1988 hypothetical protein~PFAM: Tetrapyrrole methylase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609368~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase%2C YraL family gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2408 Tresu_2409 Tresu_2409 Tresu_2409 2579922 2581109 - TraB family protein COGs: COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein)~InterPro IPR002816:IPR005230~KEGG: tde:TDE0026 TraB family protein~PFAM: Pheromone shutdown-related%2C TraB~SPTR: TraB family protein%3B~TIGRFAM: Pheromone shutdown%2C TraB~IMG reference gene:2504609369~PFAM: TraB family~TIGRFAM: pheromone shutdown-related protein TraB gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2409 Tresu_2410 Tresu_2410 Tresu_2410 2581115 2582575 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR013105:IPR001440:IPR019734~KEGG: tde:TDE0993 putative lipoprotein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504609370~PFAM: Tetratricopeptide repeat gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2410 Tresu_2411 Tresu_2411 Tresu_2411 2582639 2584534 + hypothetical protein KEGG: tde:TDE0994 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609371 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2411 Tresu_2412 Tresu_2412 Tresu_2412 2584681 2586111 + glycoside hydrolase family 37 COGs: COG1626 Neutral trehalase~InterPro IPR001661~KEGG: tde:TDE0996 hypothetical protein~PFAM: Glycoside hydrolase%2C family 37~SPTR: Trehalase%3B~IMG reference gene:2504609372~PFAM: Trehalase gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2412 Tresu_2413 Tresu_2413 Tresu_2413 2586236 2587774 + Ppx/GppA phosphatase COGs: COG0248 Exopolyphosphatase~InterPro IPR003695:IPR006674~KEGG: sta:STHERM_c22140 hypothetical protein~PFAM: Ppx/GppA phosphatase%3B Metal-dependent phosphohydrolase%2C HD subdomain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609373~PFAM: HD domain%3B Ppx/GppA phosphatase family gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2413 Tresu_2414 Tresu_2414 Tresu_2414 2587778 2589907 + Polyphosphate kinase COGs: COG0855 Polyphosphate kinase~HAMAP: Polyphosphate kinase~InterPro IPR003414~KEGG: hmo:HM1_0232 polyphosphate kinase~PFAM: Polyphosphate kinase~PRIAM: Polyphosphate kinase~SPTR: Polyphosphate kinase%3B~TIGRFAM: Polyphosphate kinase~IMG reference gene:2504609374~PFAM: Polyphosphate kinase~TIGRFAM: polyphosphate kinase 1 gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2414 Tresu_2415 Tresu_2415 Tresu_2415 2590173 2590394 - Translation initiation factor IF-1 COGs: COG0361 Translation initiation factor 1 (IF-1)~HAMAP: Translation initiation factor IF-1~InterPro IPR006196:IPR004368:IPR022967~KEGG: tde:TDE2087 translation initiation factor IF-1~PFAM: RNA-binding domain%2C S1%2C IF1 type~SMART: RNA-binding domain%2C S1~SPTR: Translation initiation factor IF-1%3B~TIGRFAM: Translation initiation factor IF-1~IMG reference gene:2504609375~PFAM: Translation initiation factor 1A / IF-1~TIGRFAM: translation initiation factor IF-1 gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2415 Tresu_2416 Tresu_2416 Tresu_2416 2590517 2590873 + transcriptional regulator%2C TraR/DksA family COGs: COG1734 DnaK suppressor protein~InterPro IPR000962~KEGG: tde:TDE2088 C4 zinc finger domain-containing protein~SPTR: C4 zinc finger domain protein%2C DksA/TraR family%3B~IMG reference gene:2504609376~PFAM: Prokaryotic dksA/traR C4-type zinc finger~TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein%2C TraR family%3B RNA polymerase-binding protein DksA gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2416 Tresu_2417 Tresu_2417 Tresu_2417 2590870 2591712 - histidinol phosphate phosphatase HisJ family COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~InterPro IPR004013:IPR010140:IPR003141~KEGG: ccb:Clocel_3917 histidinol phosphate phosphatase HisJ family~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: Histidinol phosphate phosphatase HisJ family%3B~TIGRFAM: Histidinol phosphate phosphatase%2C HisJ~IMG reference gene:2504609377~PFAM: PHP domain~TIGRFAM: histidinol phosphate phosphatase HisJ family gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2417 Tresu_2418 Tresu_2418 Tresu_2418 2591729 2592973 - response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: ssm:Spirs_4133 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain~SPTR: Response regulator receiver protein%3B~IMG reference gene:2504609378~PFAM: Response regulator receiver domain gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2418 Tresu_2419 Tresu_2419 Tresu_2419 2593056 2593634 + DJ-1 family protein COGs: COG0693 Putative intracellular protease/amidase~InterPro IPR002818:IPR006287~KEGG: sta:STHERM_c18300 hypothetical protein~PFAM: ThiJ/PfpI~SPTR: DJ-1 family protein%3B~TIGRFAM: DJ-1~IMG reference gene:2504609379~PFAM: DJ-1/PfpI family~TIGRFAM: DJ-1 family protein gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2419 Tresu_2420 Tresu_2420 Tresu_2420 2593636 2594223 - regulatory protein LuxR InterPro IPR000792~PFAM: Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal~SPTR: Sigma-70%2C region 4 family%3B~IMG reference gene:2504609380~PFAM: Bacterial regulatory proteins%2C luxR family gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2420 Tresu_2421 Tresu_2421 Tresu_2421 2594239 2594418 - hypothetical protein IMG reference gene:2504609381 gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2421 Tresu_2422 Tresu_2422 Tresu_2422 2594435 2594980 - flavin reductase domain protein FMN-binding protein COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family~InterPro IPR002563~KEGG: cdl:CDR20291_2028 hypothetical protein~PFAM: Flavin reductase-like%2C FMN-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609382~PFAM: Flavin reductase like domain gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2422 Tresu_2423 Tresu_2423 Tresu_2423 2595336 2595980 - CBS domain containing membrane protein COGs: COG3448 CBS-domain-containing membrane protein~InterPro IPR000644:IPR002912~KEGG: sta:STHERM_c19020 CBS domain containing protein~PFAM: Cystathionine beta-synthase%2C core%3B Amino acid-binding ACT~SMART: Cystathionine beta-synthase%2C core~SPTR: CBS domain containing protein%3B~IMG reference gene:2504609384~PFAM: CBS domain gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2423 Tresu_2424 Tresu_2424 Tresu_2424 2595983 2596693 - Fe(3+)-transporting ATPase COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003439:IPR003593~KEGG: hmo:HM1_0494 branched-chain amino acid abc transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Fe(3+)-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Branched-chain amino acid abc transporter%2C ATP-binding protein%3B~IMG reference gene:2504609385~PFAM: ABC transporter gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2424 Tresu_2425 Tresu_2425 Tresu_2425 2596680 2597504 - Monosaccharide-transporting ATPase COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003439:IPR003593~KEGG: hmo:HM1_0493 branched chain amino acid abc transporter%2C putative~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Amino acid ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504609386~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2425 Tresu_2426 Tresu_2426 Tresu_2426 2597501 2598517 - ABC-type transporter%2C integral membrane subunit COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851~KEGG: sta:STHERM_c19050 transporter~PFAM: ABC transporter permease~SPTR: Transporter%3B~IMG reference gene:2504609387~PFAM: Branched-chain amino acid transport system / permease component gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2426 Tresu_2427 Tresu_2427 Tresu_2427 2598528 2599418 - ABC-type transporter%2C integral membrane subunit COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851~KEGG: sta:STHERM_c19060 hypothetical protein~PFAM: ABC transporter permease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609388~PFAM: Branched-chain amino acid transport system / permease component gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2427 Tresu_2428 Tresu_2428 Tresu_2428 2599539 2600681 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: sta:STHERM_c19070 hypothetical protein~PFAM: Extracellular ligand-binding receptor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609389~PFAM: Receptor family ligand binding region gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2428 Tresu_2429 Tresu_2429 Tresu_2429 2600851 2601099 - hypothetical protein KEGG: tde:TDE0793 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609390 gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2429 Tresu_2430 Tresu_2430 Tresu_2430 2601110 2601541 - 50S ribosomal protein L17 COGs: COG0203 Ribosomal protein L17~HAMAP: Ribosomal protein L17~InterPro IPR000456~KEGG: tde:TDE0792 50S ribosomal protein L17~PFAM: Ribosomal protein L17~SPTR: 50S ribosomal protein L17%3B~TIGRFAM: Ribosomal protein L17~IMG reference gene:2504609391~PFAM: Ribosomal protein L17~TIGRFAM: ribosomal protein L17 gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2430 Tresu_2431 Tresu_2431 Tresu_2431 2601538 2602584 - DNA-directed RNA polymerase subunit alpha COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit~HAMAP: DNA-directed RNA polymerase%2C alpha subunit~InterProIPR011261:IPR011262:IPR011260:IPR011773:IPR 011263~KEGG: ssm:Spirs_0980 DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase%2C alpha subunit%2C C-terminal%3B DNA-directed RNA polymerase%2C dimerisation%3B DNA-directed RNA polymerase%2C insert domain~SMART: DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type~SPTR: DNA-directed RNA polymerase subunit alpha%3B~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~IMG reference gene:2504609392~PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain%3B RNA polymerase Rpb3/RpoA insert domain%3B Bacterial RNA polymerase%2C alpha chain C terminal domain~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit%2C bacterial and chloroplast-type gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2431 Tresu_2432 Tresu_2432 Tresu_2432 2602678 2603061 - 30S ribosomal protein S11 COGs: COG0100 Ribosomal protein S11~InterPro IPR001971:IPR019981~KEGG: tde:TDE0790 30S ribosomal protein S11~PFAM: Ribosomal protein S11~SPTR: 30S ribosomal protein S11%3B~TIGRFAM: Ribosomal protein S11%2C bacterial-type~IMG reference gene:2504609393~PFAM: Ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11 gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2432 Tresu_2433 Tresu_2433 Tresu_2433 2603074 2603442 - 30S ribosomal protein S13 COGs: COG0099 Ribosomal protein S13~InterPro IPR001892:IPR019980~KEGG: tde:TDE0789 30S ribosomal protein S13~PFAM: Ribosomal protein S13~SPTR: 30S ribosomal protein S13%3B~TIGRFAM: Ribosomal protein S13%2C bacterial-type~IMG reference gene:2504609394~PFAM: Ribosomal protein S13/S18~TIGRFAM: 30S ribosomal protein S13 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2433 Tresu_2434 Tresu_2434 Tresu_2434 2603453 2603566 - 50S ribosomal protein L36 HAMAP: Ribosomal protein L36~InterPro IPR000473~KEGG: tde:TDE0788 50S ribosomal protein L36~PFAM: Ribosomal protein L36~SPTR: 50S ribosomal protein L36%3B~TIGRFAM: Ribosomal protein L36~manually curated~IMG reference gene:2504609395~PFAM: Ribosomal protein L36~TIGRFAM: ribosomal protein L36%2C bacterial type gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2434 Tresu_2435 Tresu_2435 Tresu_2435 2603723 2605057 - preprotein translocase%2C SecY subunit COGs: COG0201 Preprotein translocase subunit SecY~InterPro IPR002208~KEGG: tde:TDE0787 preprotein translocase subunit SecY~PFAM: SecY protein~SPTR: Preprotein translocase%2C SecY subunit%3B~TIGRFAM: SecY protein~IMG reference gene:2504609396~PFAM: eubacterial secY protein~TIGRFAM: preprotein translocase%2C SecY subunit gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2435 Tresu_2436 Tresu_2436 Tresu_2436 2605073 2605546 - ribosomal protein L15 COGs: COG0200 Ribosomal protein L15~InterPro IPR005749~KEGG: tde:TDE0786 50S ribosomal protein L15~SPTR: 50S ribosomal protein L15%3B~TIGRFAM: Ribosomal protein L15%2C bacterial-type~IMG reference gene:2504609397~PFAM: Ribosomal protein L18e/L15~TIGRFAM: ribosomal protein L15%2C bacterial/organelle gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2436 Tresu_2437 Tresu_2437 Tresu_2437 2605546 2605728 - ribosomal protein L30 COGs: COG1841 Ribosomal protein L30/L7E~InterPro IPR016082:IPR005996~KEGG: tjr:TherJR_0314 ribosomal protein L30~PFAM: Ribosomal protein L30%2C ferredoxin-like fold domain~SPTR: 50S ribosomal protein L30%3B~TIGRFAM: Ribosomal protein L30%2C bacterial-type~IMG reference gene:2504609398~PFAM: Ribosomal protein L30p/L7e~TIGRFAM: ribosomal protein L30%2C bacterial/organelle gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2437 Tresu_2438 Tresu_2438 Tresu_2438 2605731 2606243 - ribosomal protein S5 COGs: COG0098 Ribosomal protein S5~InterPro IPR013810:IPR005324:IPR005712~KEGG: tde:TDE0784 30S ribosomal protein S5~PFAM: Ribosomal protein S5%2C N-terminal%3B Ribosomal protein S5%2C C-terminal~SPTR: 30S ribosomal protein S5%3B~TIGRFAM: Ribosomal protein S5%2C bacterial-type~IMG reference gene:2504609399~PFAM: Ribosomal protein S5%2C N-terminal domain%3B Ribosomal protein S5%2C C-terminal domain~TIGRFAM: ribosomal protein S5%2C bacterial/organelle type gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2438 Tresu_2439 Tresu_2439 Tresu_2439 2606252 2606614 - ribosomal protein L18 COGs: COG0256 Ribosomal protein L18~InterPro IPR005484:IPR004389~KEGG: tde:TDE0783 50S ribosomal protein L18~PFAM: Ribosomal protein L18/L5~SPTR: 50S ribosomal protein L18%3B~TIGRFAM: Ribosomal protein L18%2C bacterial~IMG reference gene:2504609400~PFAM: Ribosomal L18p/L5e family~TIGRFAM: ribosomal protein L18%2C bacterial type gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2439 Tresu_2440 Tresu_2440 Tresu_2440 2606626 2607168 - ribosomal protein L6 COGs: COG0097 Ribosomal protein L6P/L9E~InterPro IPR020040:IPR019906~KEGG: ssm:Spirs_0970 ribosomal protein L6~PFAM: Ribosomal protein L6%2C alpha-beta domain~SPTR: 50S ribosomal protein L6%3B~TIGRFAM: Ribosomal protein L6%2C bacterial-type~IMG reference gene:2504609401~PFAM: Ribosomal protein L6~TIGRFAM: ribosomal protein L6%2C bacterial type gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2440 Tresu_2441 Tresu_2441 Tresu_2441 2607181 2607582 - ribosomal protein S8 COGs: COG0096 Ribosomal protein S8~InterPro IPR000630~KEGG: tpp:TPASS_0203 30S ribosomal protein S8~PFAM: Ribosomal protein S8~SPTR: 30S ribosomal protein S8%3B~IMG reference gene:2504609402~PFAM: Ribosomal protein S8 gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2441 Tresu_2442 Tresu_2442 Tresu_2442 2607601 2607786 - ribosomal protein S14 COGs: COG0199 Ribosomal protein S14~InterPro IPR001209~KEGG: ssm:Spirs_0968 ribosomal protein S14~PFAM: Ribosomal protein S14~SPTR: 30S ribosomal protein S14 type Z%3B~manually curated~IMG reference gene:2504609403~PFAM: Ribosomal protein S14p/S29e gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2442 Tresu_2443 Tresu_2443 Tresu_2443 2607798 2608349 - ribosomal protein L5 COGs: COG0094 Ribosomal protein L5~InterPro IPR002132~KEGG: tde:TDE0779 50S ribosomal protein L5~PFAM: Ribosomal protein L5~SPTR: 50S ribosomal protein L5%3B~IMG reference gene:2504609404~PFAM: ribosomal L5P family C-terminus%3B Ribosomal protein L5 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2443 Tresu_2444 Tresu_2444 Tresu_2444 2608349 2608672 - ribosomal protein L24 COGs: COG0198 Ribosomal protein L24~InterPro IPR005824:IPR003256~KEGG: tde:TDE0778 50S ribosomal protein L24~PFAM: KOW~SMART: KOW~SPTR: 50S ribosomal protein L24%3B~TIGRFAM: Ribosomal protein L24~IMG reference gene:2504609405~PFAM: KOW motif~TIGRFAM: ribosomal protein L24%2C bacterial/organelle gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2444 Tresu_2445 Tresu_2445 Tresu_2445 2608687 2609055 - ribosomal protein L14 COGs: COG0093 Ribosomal protein L14~InterPro IPR000218:IPR005745~KEGG: tde:TDE0777 50S ribosomal protein L14~PFAM: Ribosomal protein L14b/L23e~SPTR: 50S ribosomal protein L14%3B~TIGRFAM: Ribosomal protein L14%2C bacterial-type~IMG reference gene:2504609406~PFAM: Ribosomal protein L14p/L23e~TIGRFAM: ribosomal protein L14%2C bacterial/organelle gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2445 Tresu_2446 Tresu_2446 Tresu_2446 2609071 2609343 - 30S ribosomal protein S17 COGs: COG0186 Ribosomal protein S17~InterPro IPR000266:IPR019984~KEGG: ssm:Spirs_0964 30S ribosomal protein S17~PFAM: Ribosomal protein S17~SPTR: 30S ribosomal protein S17%3B~TIGRFAM: Ribosomal protein S17%2C bacterial-type~IMG reference gene:2504609407~PFAM: Ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17 gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2446 Tresu_2447 Tresu_2447 Tresu_2447 2609354 2609596 - ribosomal protein L29 InterPro IPR001854~KEGG: tde:TDE0775 50S ribosomal protein L29~PFAM: Ribosomal protein L29~SPTR: 50S ribosomal protein L29%3B~TIGRFAM: Ribosomal protein L29~IMG reference gene:2504609408~PFAM: Ribosomal L29 protein~TIGRFAM: ribosomal protein L29 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2447 Tresu_2448 Tresu_2448 Tresu_2448 2609607 2610023 - 50S ribosomal protein L16 COGs: COG0197 Ribosomal protein L16/L10E~HAMAP: Ribosomal protein L16~InterPro IPR016180:IPR000114~KEGG: tpp:TPASS_0196 50S ribosomal protein L16~PFAM: Ribosomal protein L10e/L16~SPTR: 50S ribosomal protein L16%3B~TIGRFAM: Ribosomal protein L16~IMG reference gene:2504609409~PFAM: Ribosomal protein L16p/L10e~TIGRFAM: ribosomal protein L16%2C bacterial/organelle gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2448 Tresu_2449 Tresu_2449 Tresu_2449 2610016 2610768 - ribosomal protein S3 COGs: COG0092 Ribosomal protein S3~InterProIPR008282:IPR004044:IPR001351:IPR005704:IPR 004087~KEGG: tde:TDE0773 30S ribosomal protein S3~PFAM: Ribosomal protein S3%2C C-terminal%3B Ribosomal protein S3%2C N-terminal%3B K Homology%2C type 2~SMART: K Homology~SPTR: 30S ribosomal protein S3%3B~TIGRFAM: Ribosomal protein S3%2C bacterial~IMG reference gene:2504609410~PFAM: KH domain%3B Ribosomal protein S3%2C C-terminal domain%3B Ribosomal protein S3%2C N-terminal domain~TIGRFAM: ribosomal protein S3%2C bacterial type gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2449 Tresu_2450 Tresu_2450 Tresu_2450 2610770 2611126 - ribosomal protein L22 COGs: COG0091 Ribosomal protein L22~InterPro IPR001063:IPR005727~KEGG: tde:TDE0772 50S ribosomal protein L22~PFAM: Ribosomal protein L22/L17~SPTR: 50S ribosomal protein L22%3B~TIGRFAM: Ribosomal protein L22%2C bacterial-type~IMG reference gene:2504609411~PFAM: Ribosomal protein L22p/L17e~TIGRFAM: ribosomal protein L22%2C bacterial type gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2450 Tresu_2451 Tresu_2451 Tresu_2451 2611141 2611425 - ribosomal protein S19 COGs: COG0185 Ribosomal protein S19~InterPro IPR002222:IPR005732~KEGG: ssm:Spirs_0959 ribosomal protein S19~PFAM: Ribosomal protein S19/S15~SPTR: 30S ribosomal protein S19%3B~TIGRFAM: Ribosomal protein S19%2C bacterial-type~IMG reference gene:2504609412~PFAM: Ribosomal protein S19~TIGRFAM: ribosomal protein S19%2C bacterial/organelle gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2451 Tresu_2452 Tresu_2452 Tresu_2452 2611440 2612264 - ribosomal protein L2 COGs: COG0090 Ribosomal protein L2~InterPro IPR022666:IPR022669:IPR005880~KEGG: tde:TDE0770 50S ribosomal protein L2~PFAM: Ribosomal protein L2%2C C-terminal%3B Ribosomal Proteins L2%2C RNA binding domain~SPTR: 50S ribosomal protein L2%3B~TIGRFAM: Ribosomal protein L2%2C bacterial-type~IMG reference gene:2504609413~PFAM: Ribosomal Proteins L2%2C RNA binding domain%3B Ribosomal Proteins L2%2C C-terminal domain~TIGRFAM: ribosomal protein L2%2C bacterial/organellar gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2452 Tresu_2453 Tresu_2453 Tresu_2453 2612294 2612578 - Ribosomal protein L25/L23 COGs: COG0089 Ribosomal protein L23~InterPro IPR013025~KEGG: tde:TDE0769 50S ribosomal protein L23~PFAM: Ribosomal protein L25/L23~SPTR: 50S ribosomal protein L23%3B~IMG reference gene:2504609414~PFAM: Ribosomal protein L23 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2453 Tresu_2454 Tresu_2454 Tresu_2454 2612578 2613216 - ribosomal protein L4/L1e COGs: COG0088 Ribosomal protein L4~InterPro IPR002136~KEGG: tde:TDE0768 50S ribosomal protein L4~PFAM: Ribosomal protein L4/L1e~SPTR: 50S ribosomal protein L4%3B~IMG reference gene:2504609415~PFAM: Ribosomal protein L4/L1 family~TIGRFAM: 50S ribosomal protein L4%2C bacterial/organelle gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2454 Tresu_2455 Tresu_2455 Tresu_2455 2613231 2613851 - 50S ribosomal protein L3 COGs: COG0087 Ribosomal protein L3~InterPro IPR000597:IPR019927~KEGG: tde:TDE0767 50S ribosomal protein L3~PFAM: Ribosomal protein L3~SPTR: 50S ribosomal protein L3%3B~TIGRFAM: Ribosomal protein L3%2C bacterial/organelle-type~IMG reference gene:2504609416~PFAM: Ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3%2C bacterial gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2455 Tresu_2456 Tresu_2456 Tresu_2456 2613932 2614240 - 30S ribosomal protein S10 COGs: COG0051 Ribosomal protein S10~HAMAP: Ribosomal protein S10 subgroup~InterPro IPR001848:IPR005731~KEGG: ssm:Spirs_0954 ribosomal protein S10~PFAM: Ribosomal protein S10~SPTR: 30S ribosomal protein S10%3B~TIGRFAM: Ribosomal protein S10 subgroup~IMG reference gene:2504609417~PFAM: Ribosomal protein S10p/S20e~TIGRFAM: ribosomal protein S10%2C bacterial/organelle gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2456 Tresu_2457 Tresu_2457 Tresu_2457 2614289 2615476 - translation elongation factor Tu COGs: COG0050 GTPase - translation elongation factors~InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225~KEGG: tde:TDE0765 elongation factor Tu~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFTu/EF1A%2C C-terminal~SPTR: Elongation factor Tu%3B~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~IMG reference gene:2504609418~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu C-terminal domain%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation elongation factor TU gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2457 Tresu_2458 Tresu_2458 Tresu_2458 2616199 2616669 - ribosomal protein S7 COGs: COG0049 Ribosomal protein S7~InterPro IPR000235:IPR005717~KEGG: tde:TDE1048 30S ribosomal protein S7~PFAM: Ribosomal protein S7~SPTR: 30S ribosomal protein S7%3B~TIGRFAM: Ribosomal protein S7%2C bacterial-type~IMG reference gene:2504609419~PFAM: Ribosomal protein S7p/S5e~TIGRFAM: ribosomal protein S7%2C bacterial/organelle gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2458 Tresu_2459 Tresu_2459 Tresu_2459 2616685 2617059 - ribosomal protein S12 COGs: COG0048 Ribosomal protein S12~InterPro IPR006032:IPR005679~KEGG: tde:TDE1047 30S ribosomal protein S12~PFAM: Ribosomal protein S12/S23~SPTR: 30S ribosomal protein S12%3B~TIGRFAM: Ribosomal protein S12%2C bacteria~IMG reference gene:2504609420~PFAM: Ribosomal protein S12~TIGRFAM: ribosomal protein S12%2C bacterial/organelle gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2459 Tresu_2460 Tresu_2460 Tresu_2460 2617208 2621692 - DNA-directed RNA polymerase subunit beta' COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit~HAMAP: DNA-directed RNA polymerase%2C subunit beta-prime~InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592~KEGG: tpp:TPASS_0242 DNA-directed RNA polymerase subunit beta'~PFAM: RNA polymerase Rpb1%2C domain 1%3B RNA polymerase%2C alpha subunit%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 5~SMART: RNA polymerase%2C N-terminal~SPTR: DNA-directed RNA polymerase subunit beta'%3B~TIGRFAM: DNA-directed RNA polymerase%2C subunit beta-prime~IMG reference gene:2504609421~PFAM: RNA polymerase Rpb1%2C domain 2%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 1%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 5~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit%2C predominant form gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2460 Tresu_2461 Tresu_2461 Tresu_2461 2621685 2625242 - DNA-directed RNA polymerase subunit beta COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit~HAMAP: DNA-directed RNA polymerase%2C beta subunit%2C bacterial-type~InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243~KEGG: tde:TDE2421 DNA-directed RNA polymerase subunit beta~PFAM: DNA-directed RNA polymerase%2C subunit 2%2C domain 6%3B RNA polymerase Rpb2%2C domain 3%3B RNA polymerase%2C beta subunit%2C protrusion%3B RNA polymerase Rpb2%2C domain 2%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain%3B RNA polymerase Rpb2%2C domain 7~SPTR: DNA-directed RNA polymerase subunit beta%3B~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit%2C bacterial-type~IMG reference gene:2504609422~PFAM: RNA polymerase Rpb2%2C domain 3%3B RNA polymerase Rpb2%2C domain 6%3B RNA polymerase beta subunit external 1 domain%3B RNA polymerase Rpb2%2C domain 2%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2%2C domain 7~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2461 Tresu_2462 Tresu_2462 Tresu_2462 2625483 2625857 - 50S ribosomal protein L7/L12 COGs: COG0222 Ribosomal protein L7/L12~HAMAP: Ribosomal protein L7/L12~InterPro IPR013823:IPR000206~KEGG: tde:TDE2422 50S ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12%2C C-terminal~SPTR: 50S ribosomal protein L7/L12%3B~TIGRFAM: Ribosomal protein L7/L12~IMG reference gene:2504609423~PFAM: Ribosomal protein L7/L12 C-terminal domain~TIGRFAM: ribosomal protein L7/L12 gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2462 Tresu_2463 Tresu_2463 Tresu_2463 2626027 2626623 - 50S ribosomal protein L10 COGs: COG0244 Ribosomal protein L10~HAMAP: Ribosomal protein L10~InterPro IPR001790:IPR022973~KEGG: tde:TDE2423 50S ribosomal protein L10~PFAM: Ribosomal protein L10/acidic P0~SPTR: 50S ribosomal protein L10%3B~IMG reference gene:2504609424~PFAM: Ribosomal protein L10 gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2463 Tresu_2464 Tresu_2464 Tresu_2464 2626623 2627300 - ribosomal protein L1 COGs: COG0081 Ribosomal protein L1~InterPro IPR002143:IPR005878~KEGG: tde:TDE2424 50S ribosomal protein L1~PFAM: Ribosomal protein L1~SPTR: 50S ribosomal protein L1%3B~TIGRFAM: Ribosomal protein L1%2C bacterial-type~IMG reference gene:2504609425~PFAM: Ribosomal protein L1p/L10e family~TIGRFAM: ribosomal protein L1%2C bacterial/chloroplast gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2464 Tresu_2465 Tresu_2465 Tresu_2465 2627300 2627734 - ribosomal protein L11 COGs: COG0080 Ribosomal protein L11~InterPro IPR020784:IPR020783:IPR006519:IPR000911~KEGG: tde:TDE2425 50S ribosomal protein L11~PFAM: Ribosomal protein L11%2C C-terminal domain%3B Ribosomal protein L11%2C N-terminal domain~SMART: Ribosomal protein L11~SPTR: 50S ribosomal protein L11%3B~TIGRFAM: Ribosomal protein L11%2C bacterial-type~IMG reference gene:2504609426~PFAM: Ribosomal protein L11%2C RNA binding domain%3B Ribosomal protein L11%2C N-terminal domain~TIGRFAM: 50S ribosomal protein L11 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2465 Tresu_2466 Tresu_2466 Tresu_2466 2627928 2628485 - NusG antitermination factor COGs: COG0250 Transcription antiterminator~InterPro IPR006645:IPR005824:IPR001062~KEGG: ssm:Spirs_0944 NusG antitermination factor~PFAM: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~SMART: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~SPTR: Transcription antitermination protein nusG%3B~TIGRFAM: Transcription antitermination protein%2C NusG~IMG reference gene:2504609427~PFAM: Transcription termination factor nusG%3B KOW motif~TIGRFAM: transcription termination/antitermination factor NusG gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2466 Tresu_2467 Tresu_2467 Tresu_2467 2628495 2628674 - preprotein translocase%2C SecE subunit InterPro IPR001901:IPR005807~KEGG: ssm:Spirs_0943 preprotein translocase%2C SecE subunit~PFAM: Protein SecE/Sec61-gamma protein~SPTR: Preprotein translocase%2C SecE subunit%3B~TIGRFAM: SecE subunit of protein translocation complex~IMG reference gene:2504609428~PFAM: SecE/Sec61-gamma subunits of protein translocation complex~TIGRFAM: preprotein translocase%2C SecE subunit%2C bacterial gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2467 Tresu_2468 Tresu_2468 Tresu_2468 2628811 2628987 - 50S ribosomal protein L33 HAMAP: Ribosomal protein L33~InterPro IPR001705~KEGG: tde:TDE2428 50S ribosomal protein L33~PFAM: Ribosomal protein L33~SPTR: 50S ribosomal protein L33%3B~TIGRFAM: Ribosomal protein L33~IMG reference gene:2504609430~PFAM: Ribosomal protein L33~TIGRFAM: ribosomal protein L33%2C bacterial type gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2468 Tresu_2469 Tresu_2469 Tresu_2469 2629214 2630077 - Serine O-acetyltransferase COGs: COG1045 Serine acetyltransferase~InterPro IPR001451~KEGG: sta:STHERM_c02440 serine acetyltransferase~PFAM: Bacterial transferase hexapeptide repeat~PRIAM: Serine O-acetyltransferase~SPTR: Serine acetyltransferase%3B~IMG reference gene:2504609432~PFAM: Bacterial transferase hexapeptide (three repeats)~TIGRFAM: serine O-acetyltransferase gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2469 Tresu_2470 Tresu_2470 Tresu_2470 2630114 2630620 - hypothetical protein KEGG: cbk:CLL_A2046 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609433 gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2470 Tresu_2471 Tresu_2471 Tresu_2471 2630748 2631014 - hypothetical protein KEGG: hde:HDEF_2199 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609434 gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2471 Tresu_2472 Tresu_2472 Tresu_2472 2630986 2631306 - protein of unknown function DUF497 COGs: COG2929 conserved hypothetical protein~InterPro IPR007460~KEGG: tde:TDE1807 hypothetical protein~PFAM: Protein of unknown function DUF497~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609435~PFAM: Protein of unknown function (DUF497) gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2472 Tresu_2473 Tresu_2473 Tresu_2473 2631470 2632864 - KAP P-loop domain protein InterPro IPR011646~KEGG: pmz:HMPREF0659_A5717 kap family P-loop domain protein~PFAM: KAP P-loop~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609436~PFAM: KAP family P-loop domain gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2473 Tresu_2474 Tresu_2474 Tresu_2474 2633121 2634068 - Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: bha:BH0900 transcriptional regulator (enhancement of xylanase A production)~PFAM: Sulphatase-modifying factor~SPTR: Transcriptional regulator (Enhancement of xylanase A production)%3B~IMG reference gene:2504609437~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt)%3B Formylglycine-generating sulfatase enzyme gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2474 Tresu_2475 Tresu_2475 Tresu_2475 2634171 2634350 - hypothetical protein IMG reference gene:2504609438 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2475 Tresu_2476 Tresu_2476 Tresu_2476 2634599 2635210 - polysaccharide deacetylase COGs: COG0726 xylanase/chitin deacetylase~InterPro IPR002509~KEGG: tnp:Tnap_0743 polysaccharide deacetylase~PFAM: Polysaccharide deacetylase~SPTR: Predicted xylanase/chitin deacetylase%3B~IMG reference gene:2504609439~PFAM: Polysaccharide deacetylase gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2476 Tresu_2477 Tresu_2477 Tresu_2477 2635207 2635959 - filamentation induced by cAMP protein Fic InterPro IPR003812~KEGG: tde:TDE2745 fic family protein~PFAM: Filamentation induced by cAMP/death on curing-related~SPTR: Fic family protein%3B~IMG reference gene:2504609440~PFAM: Fic/DOC family gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2477 Tresu_2478 Tresu_2478 Tresu_2478 2636198 2636917 - hypothetical protein IMG reference gene:2504609441 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2478 Tresu_2479 Tresu_2479 Tresu_2479 2637056 2638207 + Cobyrinic acid ac-diamide synthase COGs: COG0455 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: tde:TDE1397 flagellar synthesis regulator FleN%2C putative~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: ATP-binding protein%3B~IMG reference gene:2504609442~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2479 Tresu_2480 Tresu_2480 Tresu_2480 2638213 2639214 + Prolipoprotein diacylglyceryl transferase COGs: COG0682 Prolipoprotein diacylglyceryltransferase~HAMAP: Prolipoprotein diacylglyceryl transferase~InterPro IPR001640~KEGG: tpp:TPASS_0852 prolipoprotein diacylglyceryl transferase~PFAM: Prolipoprotein diacylglyceryl transferase~SPTR: Prolipoprotein diacylglyceryl transferase%3B~TIGRFAM: Prolipoprotein diacylglyceryl transferase~IMG reference gene:2504609443~PFAM: Prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2480 Tresu_2481 Tresu_2481 Tresu_2481 2639186 2639962 + Methyltransferase type 11 InterPro IPR013216~KEGG: eel:EUBELI_01603 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609444~PFAM: Methyltransferase domain gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2481 Tresu_2482 Tresu_2482 Tresu_2482 2640034 2641206 - Phosphoribosylaminoimidazolecarboxamideformyltra nsferase COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)~InterPro IPR013982~KEGG: pmz:HMPREF0659_A5388 AICARFT/IMPCHase bienzyme~PFAM: AICARFT/IMPCHase bienzyme%2C transformylase domain~PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase~SMART: AICARFT/IMPCHase bienzyme%2C transformylase domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609445~PFAM: AICARFT/IMPCHase bienzyme gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2482 Tresu_2483 Tresu_2483 Tresu_2483 2641221 2642516 - phosphoribosyl-ATP diphosphatase COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase~InterPro IPR006062:IPR002496:IPR021130:IPR008179~KEGG: kko:Kkor_0859 phosphoribosyl-ATP diphosphatase~PFAM: Histidine biosynthesis%3B Phosphoribosyl-AMP cyclohydrolase%3B Phosphoribosyl-ATP pyrophosphohydrolase-like~PRIAM:1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamideisomerase.%2C Phosphoribosyl-AMP cyclohydrolase~SPTR: Phosphoribosyl-ATP diphosphatase%3B~TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase~IMG reference gene:2504609446~PFAM: Histidine biosynthesis protein%3B Phosphoribosyl-ATP pyrophosphohydrolase%3B Phosphoribosyl-AMP cyclohydrolase~TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2483 Tresu_2484 Tresu_2484 Tresu_2484 2642546 2643931 - dihydroorotase%2C multifunctional complex type COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase~InterPro IPR006680:IPR004722~KEGG: cbk:CLL_A2579 dihydroorotase%2C multifunctional complex type~PFAM: Amidohydrolase 1~PRIAM: Dihydroorotase~SPTR: Dihydroorotase%3B~TIGRFAM: Dihydroorotase~IMG reference gene:2504609447~PFAM: Amidohydrolase family~TIGRFAM: dihydroorotase%2C multifunctional complex type gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2484 Tresu_2485 Tresu_2485 Tresu_2485 2643943 2646408 - diguanylate cyclase/phosphodiesterase COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain~InterPro IPR000160:IPR001633~KEGG: bpb:bpr_I1850 GGDEF/EAL domain-containing protein~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~SPTR: GGDEF/EAL domain-containing protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504609448~PFAM: EAL domain%3B ABC transporter substrate binding protein%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2485 Tresu_2486 Tresu_2486 Tresu_2486 2646655 2648466 - Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterPro IPR013704:IPR007197:IPR006638~KEGG: ccb:Clocel_1340 radical SAM domain-containing protein~PFAM: Radical SAM N-terminal%3B Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: UPF0313 protein CK3_26800%3B~IMG reference gene:2504609449~PFAM: Domain of unknown function (DUF3362)%3B Radical SAM superfamily%3B Radical SAM N-terminal~TIGRFAM: uncharacterized radical SAM protein YgiQ gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2486 Tresu_2487 Tresu_2487 Tresu_2487 2648697 2649122 + hypothetical protein KEGG: sga:GALLO_1275 hypothetical protein~SPTR: Uroporphyrinogen-III decarboxylase%3B~IMG reference gene:2504609450 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2487 Tresu_2488 Tresu_2488 Tresu_2488 2649177 2650340 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG0348 Polyferredoxin~InterPro IPR001450~KEGG: clj:CLJU_c26430 hypothetical protein~PFAM: 4Fe-4S binding domain~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2504609451 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2488 Tresu_2489 Tresu_2489 Tresu_2489 2650352 2650984 - hypothetical protein KEGG: clj:CLJU_c26420 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504609452 gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2489 Tresu_2490 Tresu_2490 Tresu_2490 2651159 2652991 - aspartyl-tRNA synthetase COGs: COG0173 Aspartyl-tRNA synthetase~InterPro IPR004365:IPR004364:IPR004115:IPR004524~KEGG: tde:TDE1587 aspartyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B GAD domain~PRIAM: Aspartate--tRNA ligase~SPTR: Aspartyl-tRNA synthetase%3B~TIGRFAM: Aspartyl-tRNA synthetase%2C class IIb%2C bacterial/mitochondrial type~IMG reference gene:2504609453~PFAM: GAD domain%3B tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: aspartyl-tRNA synthetase%2C bacterial type gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2490 Tresu_2491 Tresu_2491 Tresu_2491 2653115 2654440 - metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~InterPro IPR006674:IPR003607~KEGG: bpb:bpr_I0933 HD-GYP domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~SMART: Metal-dependent phosphohydrolase%2C HD domain~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2504609454~PFAM: HD domain gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2491 Tresu_2492 Tresu_2492 Tresu_2492 2654501 2656660 - Cellulose 1%2C4-beta-cellobiosidase InterPro IPR003305:IPR004197:IPR001701~KEGG: ccb:Clocel_1478 glycoside hydrolase family 9~PFAM: Glycoside hydrolase%2C family 9%3B Glycoside hydrolase%2C family 9%2C N-terminal%2C Ig-like%3B Carbohydrate-binding%2C CenC-like~PRIAM: Cellulose 1%2C4-beta-cellobiosidase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609455~PFAM: Glycosyl hydrolase family 9%3B Carbohydrate binding domain%3B N-terminal ig-like domain of cellulase gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2492 Tresu_2493 Tresu_2493 Tresu_2493 2656861 2658345 - 4-alpha-glucanotransferase COGs: COG1640 4-alpha-glucanotransferase~InterPro IPR003385~KEGG: ere:EUBREC_1840 4-alpha-glucanotransferase~PFAM: Glycoside hydrolase%2C family 77~PRIAM: 4-alpha-glucanotransferase~SPTR: 4-alpha-glucanotransferase%3B~TIGRFAM: Glycoside hydrolase%2C family 77~IMG reference gene:2504609456~PFAM: 4-alpha-glucanotransferase~TIGRFAM: 4-alpha-glucanotransferase gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2493 Tresu_2494 Tresu_2494 Tresu_2494 2658369 2659406 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: cst:CLOST_1214 transcriptional regulator~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609457~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2494 Tresu_2495 Tresu_2495 Tresu_2495 2659500 2660345 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cst:CLOST_1213 maltose transport protein amyc~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Maltose transport protein AmyC%3B~IMG reference gene:2504609458~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2495 Tresu_2496 Tresu_2496 Tresu_2496 2660342 2661190 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ccb:Clocel_0514 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative starch degradation products transport system permease protein amyD%3B~IMG reference gene:2504609459~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2496 Tresu_2497 Tresu_2497 Tresu_2497 2661334 2662665 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: cst:CLOST_1210 extracellular solute-binding protein%2C family 1 precursor~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein%2C family 1%3B~IMG reference gene:2504609460 gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2497 Tresu_2498 Tresu_2498 Tresu_2498 2663009 2664526 + sodium/proline symporter COGs: COG0591 Na+/proline symporter~InterPro IPR001734:IPR011851:IPR019900~KEGG: mac:MA0003 sodium:proline symporter~PFAM: Sodium/solute symporter~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Sodium/proline symporter%3B Sodium/solute symporter%2C subgroup~IMG reference gene:2504609461~PFAM: Sodium:solute symporter family~TIGRFAM: sodium/proline symporter%3B transporter%2C SSS family gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2498 Tresu_2499 Tresu_2499 Tresu_2499 2664839 2665813 + ABC transporter substrate binding protein COGs: COG2984 ABC-type uncharacterized transport system periplasmic component~InterPro IPR007487~KEGG: gsu:GSU0210 hypothetical protein~PFAM: ABC transporter substrate binding protein~SPTR: ABC transporter%2C periplasmic solute-binding protein%3B~IMG reference gene:2504609462~PFAM: ABC transporter substrate binding protein gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2499 Tresu_2500 Tresu_2500 Tresu_2500 2665822 2666739 + ABC-type transporter%2C integral membrane subunit COGs: COG4120 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: dat:HRM2_37770 ABC-type transporter%2C permease component~PFAM: ABC transporter permease~SPTR: ABC-type transporter%2C permease component%3B~IMG reference gene:2504609463~PFAM: Branched-chain amino acid transport system / permease component gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2500 Tresu_2501 Tresu_2501 Tresu_2501 2666736 2667539 + Phosphonate-transporting ATPase COGs: COG1101 ABC-type uncharacterized transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: gem:GM21_0738 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504609464~PFAM: ABC transporter gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2501 Tresu_2502 Tresu_2502 Tresu_2502 2667595 2668824 + transporter%2C putative COGs: COG1301 Na+/H+-dicarboxylate symporter~KEGG: tde:TDE1111 transporter%2C putative~SPTR: Transporter%2C putative%3B~IMG reference gene:2504609465~PFAM: Sodium:dicarboxylate symporter family gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2502 Tresu_2503 Tresu_2503 Tresu_2503 2668826 2669590 + Ribosomal RNA small subunit methyltransferase E COGs: COG1385 conserved hypothetical protein~InterPro IPR006700~KEGG: tde:TDE2720 16S ribosomal RNA methyltransferase RsmE~PFAM: Ribosomal RNA small subunit methyltransferase E~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~IMG reference gene:2504609466~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2503 Tresu_2504 Tresu_2504 Tresu_2504 2669592 2670836 + protein of unknown function DUF763 COGs: COG1415 conserved hypothetical protein~InterPro IPR008482~KEGG: cpi:Cpin_4063 protein of unknown function DUF763~PFAM: Protein of unknown function DUF763~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609467~PFAM: Protein of unknown function (DUF763) gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2504 Tresu_2505 Tresu_2505 Tresu_2505 2670833 2671486 - ABC-type transporter%2C integral membrane subunit COGs: COG2011 ABC-type metal ion transport system permease component~InterPro IPR000515~KEGG: fsu:Fisuc_1035 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: D-methionine transport system permease protein MetI%3B~IMG reference gene:2504609468~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2505 Tresu_2506 Tresu_2506 Tresu_2506 2671483 2672502 - Polyamine-transporting ATPase COGs: COG1135 ABC-type metal ion transport system ATPase component~InterPro IPR003439:IPR018449:IPR003593~KEGG: fsu:Fisuc_1036 ABC transporter related protein~PFAM: ABC transporter-like%3B NIL domain~PRIAM: Polyamine-transporting ATPase~SMART: NIL domain%3B ATPase%2C AAA+ type%2C core~SPTR: Methionine import ATP-binding protein MetN%3B~IMG reference gene:2504609469~PFAM: ABC transporter%3B NIL domain gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2506 Tresu_2507 Tresu_2507 Tresu_2507 2672606 2673523 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: pdi:BDI_3794 RNA pseudouridylate synthase~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504609470~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2507 Tresu_2508 Tresu_2508 Tresu_2508 2673645 2674445 + surface antigen BspA KEGG: tva:TVAG_154640 surface antigen BspA-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609471 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2508 Tresu_2509 Tresu_2509 Tresu_2509 2674514 2676247 + flavocytochrome c COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR007329:IPR003953:IPR010960~KEGG: ssm:Spirs_3607 flavocytochrome c~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B FMN-binding~PRIAM: Succinate dehydrogenase~SMART: FMN-binding~SPTR: Flavocytochrome c%3B~TIGRFAM: Flavocytochrome c~IMG reference gene:2504609472~PFAM: FAD binding domain%3B FMN-binding domain~TIGRFAM: flavocytochrome c gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2509 Tresu_2510 Tresu_2510 Tresu_2510 2676548 2676979 - hypothetical protein IMG reference gene:2504609473 gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2510 Tresu_2511 Tresu_2511 Tresu_2511 2677274 2678635 + UPF0210 protein COGs: COG2848 conserved hypothetical protein~HAMAP: Uncharacterised protein family UPF0210~InterPro IPR007841~KEGG: amt:Amet_3399 hypothetical protein~PFAM: Uncharacterised protein family UPF0210~SPTR: UPF0210 protein Amet_3399%3B~IMG reference gene:2504609474~PFAM: Uncharacterized ACR (DUF711) gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2511 Tresu_2512 Tresu_2512 Tresu_2512 2678871 2679767 + Orotidine 5'-phosphate decarboxylase COGs: COG0284 Orotidine-5'-phosphate decarboxylase~HAMAP: Orotidine 5'-phosphate decarboxylase%2C type 2~InterPro IPR011995:IPR001754~KEGG: cbf:CLI_3377 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase domain~PRIAM: Orotidine-5'-phosphate decarboxylase~SMART: Orotidine 5'-phosphate decarboxylase domain~SPTR: Orotidine 5'-phosphate decarboxylase%3B~TIGRFAM: Orotidine 5'-phosphate decarboxylase%2C type 2~IMG reference gene:2504609475~PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family~TIGRFAM: orotidine 5'-phosphate decarboxylase%2C subfamily 2 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2512 Tresu_2513 Tresu_2513 Tresu_2513 2679818 2681593 + dihydroorotate dehydrogenase family protein COGs: COG0167 Dihydroorotate dehydrogenase~InterPro IPR001433:IPR019480:IPR012135:IPR005720~KEGG: cac:CA_C2650 dihydroorotate dehydrogenase 1B~PFAM: Dihydroorotate dehydrogenase%2C class 1/ 2%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain%3B Oxidoreductase FAD/NAD(P)-binding~PRIAM: Dihydroorotate oxidase~SPTR: Dihydroorotate dehydrogenase%3B~TIGRFAM: Dihydroorotate dehydrogenase%2C class 1~IMG reference gene:2504609476~PFAM: Dihydroorotate dehydrogenase%3B Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain~TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2513 Tresu_2514 Tresu_2514 Tresu_2514 2681598 2681966 - hypothetical protein IMG reference gene:2504609477 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2514 Tresu_2515 Tresu_2515 Tresu_2515 2681970 2682515 - Lipoprotein signal peptidase COGs: COG0597 Lipoprotein signal peptidase~HAMAP: Peptidase A8%2C signal peptidase II~InterPro IPR001872~KEGG: sta:STHERM_c21430 signal peptidase II~PFAM: Peptidase A8%2C signal peptidase II~SPTR: Lipoprotein signal peptidase%3B~TIGRFAM: Peptidase A8%2C signal peptidase II~IMG reference gene:2504609478~PFAM: Signal peptidase (SPase) II~TIGRFAM: lipoprotein signal peptidase gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2515 Tresu_2516 Tresu_2516 Tresu_2516 2682602 2683159 + phosphodiesterase%2C MJ0936 family COGs: COG0622 phosphoesterase~InterPro IPR004843:IPR000979~KEGG: ccb:Clocel_0425 phosphodiesterase%2C MJ0936 family~PFAM: Metallo-dependent phosphatase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphodiesterase MJ0936~IMG reference gene:2504609479~PFAM: Calcineurin-like phosphoesterase~TIGRFAM: phosphoesterase%2C MJ0936 family gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2516 Tresu_2517 Tresu_2517 Tresu_2517 2683131 2684174 - hypothetical protein IMG reference gene:2504609480 gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2517 Tresu_2518 Tresu_2518 Tresu_2518 2684171 2685280 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: csc:Csac_2568 glycosyl transferase%2C group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2504609481~PFAM: Glycosyl transferases group 1 gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2518 Tresu_2519 Tresu_2519 Tresu_2519 2685337 2686149 - tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: tde:TDE0050 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%3B~IMG reference gene:2504609482~PFAM: SpoU rRNA Methylase family gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2519 Tresu_2520 Tresu_2520 Tresu_2520 2686149 2687303 - iron-containing alcohol dehydrogenase COGs: COG1454 Alcohol dehydrogenase class IV~InterPro IPR001670~KEGG: tde:TDE0051 alcohol dehydrogenase%2C iron-containing~PFAM: Alcohol dehydrogenase%2C iron-type~SPTR: Alcohol dehydrogenase%2C iron-containing%3B~IMG reference gene:2504609483~PFAM: Iron-containing alcohol dehydrogenase gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2520 Tresu_2521 Tresu_2521 Tresu_2521 2687380 2687667 - Anti-sigma-28 factor FlgM family protein InterPro IPR007412~KEGG: tde:TDE0201 hypothetical protein~PFAM: Anti-sigma-28 factor%2C FlgM~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609484~PFAM: Anti-sigma-28 factor%2C FlgM gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2521 Tresu_2522 Tresu_2522 Tresu_2522 2687639 2688388 - Ribosomal RNA small subunit methyltransferase I COGs: COG0313 methyltransferase~HAMAP: Ribosomal RNA small subunit methyltransferase I~InterPro IPR000878:IPR008189~KEGG: tde:TDE0200 tetrapyrrole methylase family protein~PFAM: Tetrapyrrole methylase~SPTR: Tetrapyrrole methylase family protein%3B~TIGRFAM: Uncharacterised protein family UPF0011~manually curated~IMG reference gene:2504609485~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase%2C YraL family gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2522 Tresu_2523 Tresu_2523 Tresu_2523 2688581 2691400 + cell division protein FtsK/SpoIIIE COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein~InterPro IPR002543:IPR018541:IPR003593~KEGG: tde:TDE0173 FtsK/SpoIIIE family protein~PFAM: Cell divisionFtsK/SpoIIIE%3B DNA translocase FtsK gamma~SMART: DNA translocase FtsK gamma%3B ATPase%2C AAA+ type%2C core~SPTR: FtsK/SpoIIIE family protein%3B~IMG reference gene:2504609486~PFAM: Ftsk gamma domain%3B FtsK/SpoIIIE family gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2523 Tresu_2524 Tresu_2524 Tresu_2524 2691420 2692376 + glycoside hydrolase family 18 COGs: COG3858 glycosyl hydrolase~InterPro IPR001223:IPR011583~KEGG: kcr:Kcr_0727 PKD domain-containing protein~PFAM: Glycoside hydrolase%2C family 18%2C catalytic domain~SMART: Chitinase II~SPTR: PKD domain containing protein%3B~IMG reference gene:2504609487~PFAM: Glycosyl hydrolases family 18 gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2524 Tresu_2525 Tresu_2525 Tresu_2525 2692384 2694090 - hypothetical protein KEGG: tde:TDE2751 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609488 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2525 Tresu_2526 Tresu_2526 Tresu_2526 2694283 2695062 + NLPA lipoprotein COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen~InterPro IPR004872~KEGG: fsu:Fisuc_1037 NlpA lipoprotein~PFAM: NLPA lipoprotein~SPTR: NLPA lipoprotein%3B~IMG reference gene:2504609489~PFAM: NLPA lipoprotein~TIGRFAM: lipoprotein%2C YaeC family gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2526 Tresu_2527 Tresu_2527 Tresu_2527 2695278 2696618 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR013105:IPR007560:IPR019734~KEGG: tpp:TPASS_0915 hypothetical protein~PFAM: Tetratricopeptide TPR2%3B Restriction endonuclease%2C type IV-like%2C Mrr~SPTR: TPR domain protein%3B~IMG reference gene:2504609490~PFAM: Restriction endonuclease gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2527 Tresu_2528 Tresu_2528 Tresu_2528 2696733 2697905 - Aspartate transaminase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: bcl:ABC2913 hypothetical protein~PFAM: Aminotransferase%2C class I/classII~PRIAM: Aspartate transaminase~SPTR: Aspartate aminotransferase%3B~IMG reference gene:2504609491~PFAM: Aminotransferase class I and II gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2528 Tresu_2529 Tresu_2529 Tresu_2529 2697906 2698400 - transcriptional regulator%2C AsnC family COGs: COG1522 Transcriptional regulators~InterPro IPR019887:IPR019888~KEGG: cth:Cthe_0362 AsnC family transcriptional regulator~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type~SPTR: Transcriptional regulator%2C AsnC family%3B~IMG reference gene:2504609492~PFAM: AsnC family gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2529 Tresu_2530 Tresu_2530 Tresu_2530 2698428 2699045 - Imidazoleglycerol-phosphate dehydratase COGs: COG0131 Imidazoleglycerol-phosphate dehydratase~HAMAP: Imidazoleglycerol-phosphate dehydratase~InterPro IPR000807~KEGG: pmy:Pmen_4256 imidazoleglycerol-phosphate dehydratase~PFAM: Imidazoleglycerol-phosphate dehydratase~PRIAM: Imidazoleglycerol-phosphate dehydratase~SPTR: Imidazoleglycerol-phosphate dehydratase%3B~IMG reference gene:2504609493~PFAM: Imidazoleglycerol-phosphate dehydratase gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2530 Tresu_2531 Tresu_2531 Tresu_2531 2699058 2699930 - Histidine biosynthesis protein HisG domain protein COGs: COG0040 ATP phosphoribosyltransferase~InterPro IPR013820:IPR013115~KEGG: kko:Kkor_0854 ATP phosphoribosyltransferase~PFAM: ATP phosphoribosyltransferase%2C catalytic domain%3B Histidine biosynthesis HisG%2C C-terminal~PRIAM: ATP phosphoribosyltransferase~SPTR: ATP phosphoribosyltransferase%3B~TIGRFAM: Histidine biosynthesis HisG%2C C-terminal%3B ATP phosphoribosyltransferase%2C catalytic domain~IMG reference gene:2504609494~PFAM: HisG%2C C-terminal domain%3B ATP phosphoribosyltransferase~TIGRFAM: ATP phosphoribosyltransferase%2C C-terminal domain%3B ATP phosphoribosyltransferase gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2531 Tresu_2532 Tresu_2532 Tresu_2532 2699982 2700701 - Ribose-5-phosphate isomerase A COGs: COG0120 Ribose 5-phosphate isomerase~HAMAP: Ribose-5-phosphate isomerase%2C type A%2C subgroup~InterPro IPR020672:IPR004788~KEGG: tde:TDE1641 ribose-5-phosphate isomerase A~PFAM: Ribose 5-phosphate isomerase%2C type A~PRIAM: Ribose-5-phosphate isomerase~SPTR: Ribose-5-phosphate isomerase A%3B~TIGRFAM: Ribose 5-phosphate isomerase%2C type A~IMG reference gene:2504609495~PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A)~TIGRFAM: ribose 5-phosphate isomerase gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2532 Tresu_2533 Tresu_2533 Tresu_2533 2700701 2702194 - 3-dehydroquinate dehydratase COGs: COG0169 Shikimate 5-dehydrogenase~HAMAP: Dehydroquinase class I%3B Shikimate%2C quinate/shikimate dehydrogenase~InterPro IPR001381:IPR022893:IPR013708:IPR006151~KEGG: tde:TDE1640 3-dehydroquinate dehydratase%2C type 1%2C putative/shikimate 5-dehydrogenase%2C putative~PFAM: Dehydroquinase class I%3B Shikimate dehydrogenase substrate binding%2C N-terminal%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase~SPTR: 3-dehydroquinate dehydratase%2C type 1%2C putative/shikimate 5-dehydrogenase%2C putative%3B~IMG reference gene:2504609496~PFAM: Shikimate dehydrogenase substrate binding domain%3B Type I 3-dehydroquinase%3B Shikimate / quinate 5-dehydrogenase~TIGRFAM: 3-dehydroquinate dehydratase%2C type I%3B shikimate 5-dehydrogenase gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2533 Tresu_2534 Tresu_2534 Tresu_2534 2702196 2704292 - hypothetical protein KEGG: tde:TDE0193 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609497 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2534 Tresu_2535 Tresu_2535 Tresu_2535 2704289 2706076 - helicase domain protein COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR006935:IPR001650:IPR014001~KEGG: tde:TDE2721 helicase domain-containing protein~PFAM: Helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal~SPTR: Helicase domain protein%3B~IMG reference gene:2504609498~PFAM: Helicase conserved C-terminal domain%3B Type III restriction enzyme%2C res subunit gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2535 Tresu_2536 Tresu_2536 Tresu_2536 2706571 2707113 + Rubrerythrin COGs: COG1592 Rubrerythrin~InterPro IPR004039:IPR003251~KEGG: fsu:Fisuc_1486 rubrerythrin~PFAM: Rubrerythrin%3B Rubredoxin-type Fe(Cys)4 protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609499~PFAM: Rubrerythrin gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2536 Tresu_2537 Tresu_2537 Tresu_2537 2707191 2707595 + ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: bfr:BF3179 iron uptake regulatory protein~PFAM: Ferric-uptake regulator~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609500~PFAM: Ferric uptake regulator family gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2537 Tresu_2538 Tresu_2538 Tresu_2538 2707598 2708257 - hypothetical protein KEGG: tde:TDE2276 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609501 gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2538 Tresu_2539 Tresu_2539 Tresu_2539 2708259 2708861 - transcriptional regulator%2C TetR family COGs: COG1309 Transcriptional regulator~InterPro IPR001647~KEGG: cpr:CPR_0034 TetR family transcriptional regulator~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Probable transcription regulator%3B~IMG reference gene:2504609502~PFAM: Bacterial regulatory proteins%2C tetR family gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2539 Tresu_2540 Tresu_2540 Tresu_2540 2708865 2710019 - rRNA (guanine-N(2)-)-methyltransferase COGs: COG0116 N6-adenine-specific DNA methylase~InterPro IPR000241~KEGG: tde:TDE0938 hypothetical protein~PFAM: Putative RNA methylase~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: RNA methylase family protein%3B~IMG reference gene:2504609503~PFAM: Putative RNA methylase family UPF0020 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2540 Tresu_2541 Tresu_2541 Tresu_2541 2710130 2711260 - transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~IMG reference gene:2504609504~PFAM: Transposase DDE domain gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2541 Tresu_2542 Tresu_2542 Tresu_2542 2711593 2712045 + DNA mismatch endonuclease Vsr COGs: COG3727 DNA G:T-mismatch repair endonuclease~InterPro IPR004603~KEGG: mru:mru_1429 DNA mismatch endonuclease Vsr~PFAM: DNA mismatch endonuclease vsr~SPTR: DNA mismatch endonuclease vsr%3B~TIGRFAM: DNA mismatch endonuclease vsr~IMG reference gene:2504609505~PFAM: DNA mismatch endonuclease Vsr~TIGRFAM: DNA mismatch endonuclease Vsr gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2542 Tresu_2543 Tresu_2543 Tresu_2543 2712056 2712559 - hypothetical protein KEGG: csh:Closa_3587 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609506 gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2543 Tresu_2544 Tresu_2544 Tresu_2544 2712948 2713526 - NADPH-dependent FMN reductase COGs: COG0655 Multimeric flavodoxin WrbA~InterPro IPR005025~KEGG: bvu:BVU_3545 putative iron-sulfur flavoprotein~PFAM: NADPH-dependent FMN reductase~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504609507~PFAM: NADPH-dependent FMN reductase gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2544 Tresu_2545 Tresu_2545 Tresu_2545 2713592 2714017 - hypothetical protein KEGG: fma:FMG_1380 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609508~PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2545 Tresu_2546 Tresu_2546 Tresu_2546 2714070 2714765 - hypothetical protein KEGG: ssm:Spirs_3341 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609509~PFAM: Predicted periplasmic protein (DUF2271) gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2546 Tresu_2547 Tresu_2547 Tresu_2547 2714781 2715374 - regulatory protein TetR InterPro IPR001647~KEGG: sde:Sde_1314 TetR family transcriptional regulator~PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Regulatory protein%2C TetR%3B~IMG reference gene:2504609510~PFAM: Bacterial regulatory proteins%2C tetR family gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2547 Tresu_2548 Tresu_2548 Tresu_2548 2715461 2716243 - transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR000005:IPR018060~KEGG: bad:BAD_0619 AraC family transcriptional regulator~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain~SPTR: AraC-type DNA-binding domain-containing proteins%3B~IMG reference gene:2504609511~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2548 Tresu_2549 Tresu_2549 Tresu_2549 2716445 2717464 + glycoside hydrolase family 5 COGs: COG2730 Endoglucanase~InterPro IPR001547~KEGG: cth:Cthe_2807 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 5~SPTR: Cellulase%3B~IMG reference gene:2504609512~PFAM: Cellulase (glycosyl hydrolase family 5) gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2549 Tresu_2550 Tresu_2550 Tresu_2550 2717498 2719726 + Glucan endo-1%2C3-beta-D-glucosidase COGs: COG2273 Beta-glucanase/Beta-glucan synthetase~InterPro IPR000757:IPR003305~KEGG: cpr:CPR_2607 laminarinase~PFAM: Glycoside hydrolase%2C family 16%3B Carbohydrate-binding%2C CenC-like~PRIAM: Glucan endo-1%2C3-beta-D-glucosidase~SPTR: Endo-1%2C3(4)-beta-glucanase%3B~IMG reference gene:2504609513~PFAM: Glycosyl hydrolases family 16%3B Carbohydrate binding domain gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2550 Tresu_2551 Tresu_2551 Tresu_2551 2719820 2720464 - GCN5-related N-acetyltransferase COGs: COG3153 acetyltransferase~InterPro IPR000182~KEGG: fsu:Fisuc_2110 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain~SPTR: Predicted acetyltransferase%3B~IMG reference gene:2504609514~PFAM: Acetyltransferase (GNAT) family gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2551 Tresu_2552 Tresu_2552 Tresu_2552 2720736 2721725 - hypothetical protein KEGG: mev:Metev_2271 APHP domain-containing protein~SPTR: WD40-like Beta Propeller%3B~IMG reference gene:2504609515 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2552 Tresu_2553 Tresu_2553 Tresu_2553 2721828 2722109 + helix-turn-helix domain protein InterPro IPR001387~KEGG: cbo:CBO2391 DNA-binding phage protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: XRE family transcriptional regulator%3B~IMG reference gene:2504609516~PFAM: Helix-turn-helix gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2553 Tresu_2554 Tresu_2554 Tresu_2554 2722187 2722465 - hypothetical protein KEGG: cbi:CLJ_B2469 hypothetical protein~SPTR: Response regulator receiver protein%3B~IMG reference gene:2504609517~PFAM: Mor transcription activator family gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2554 Tresu_2555 Tresu_2555 Tresu_2555 2722702 2723181 - 5-nitroimidazole antibiotic resistance protein COGs: COG3467 flavin-nucleotide-binding protein~KEGG: mma:MM_2842 5-nitroimidazole antibiotic resistance protein~SPTR: Putative nitroimidazole resistance protein%3B~IMG reference gene:2504609518~PFAM: Pyridoxamine 5'-phosphate oxidase gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2555 Tresu_2556 Tresu_2556 Tresu_2556 2723262 2724359 + RNA binding S1 domain protein COGs: COG0539 Ribosomal protein S1~InterPro IPR003029:IPR022967~KEGG: geo:Geob_3539 30S ribosomal protein S1~PFAM: Ribosomal protein S1%2C RNA-binding domain~SMART: RNA-binding domain%2C S1~SPTR: RNA binding S1 domain protein%3B~IMG reference gene:2504609519~PFAM: S1 RNA binding domain~TIGRFAM: ribosomal protein S1 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2556 Tresu_2557 Tresu_2557 Tresu_2557 2724473 2724946 - NUDIX hydrolase InterPro IPR000086~KEGG: csh:Closa_1067 NUDIX hydrolase~PFAM: NUDIX hydrolase domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504609520~PFAM: NUDIX domain gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2557 Tresu_2558 Tresu_2558 Tresu_2558 2725213 2726622 + Amino-acid N-acetyltransferase COGs: COG0548 Acetylglutamate kinase~InterPro IPR001048:IPR000182~KEGG: sta:STHERM_c17320 putative amino acid acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain%3B Aspartate/glutamate/uridylate kinase~PRIAM: Amino-acid N-acetyltransferase~SPTR: Putative amino acid acetyltransferase%3B~IMG reference gene:2504609522~PFAM: Acetyltransferase (GNAT) family%3B Amino acid kinase family~TIGRFAM: amino-acid N-acetyltransferase gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2558 Tresu_2559 Tresu_2559 Tresu_2559 2727381 2729837 - DNA gyrase%2C A subunit COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterPro IPR002205:IPR006691:IPR005743~KEGG: tde:TDE0295 DNA gyrase%2C A subunit~PFAM: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal~SPTR: DNA gyrase%2C A subunit%3B~TIGRFAM: DNA gyrase%2C subunit A~IMG reference gene:2504609523~PFAM: DNA gyrase/topoisomerase IV%2C subunit A%3B DNA gyrase C-terminal domain%2C beta-propeller~TIGRFAM: DNA gyrase%2C A subunit gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2559 Tresu_2560 Tresu_2560 Tresu_2560 2729846 2731771 - DNA gyrase%2C B subunit COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 011557:IPR001241~KEGG: tde:TDE0002 DNA gyrase%2C B subunit~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2%3B ATPase-like%2C ATP-binding domain%3B Toprim domain%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%3B ATPase-like%2C ATP-binding domain~SPTR: DNA gyrase subunit B%3B~TIGRFAM: DNA gyrase%2C subunit B~IMG reference gene:2504609524~PFAM: Toprim domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus~TIGRFAM: DNA gyrase%2C B subunit gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2560 Tresu_2561 Tresu_2561 Tresu_2561 5 436 + hypothetical protein gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2561 Tresu_2562 Tresu_2562 Tresu_2562 463 831 + hypothetical protein gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2562 Tresu_2563 Tresu_2563 Tresu_2563 915 1331 + GPW/gp25 family protein COGs: COG3628 Phage baseplate assembly protein W~InterPro IPR007048~KEGG: hbo:Hbor_38680 phage baseplate assembly protein W~PFAM: GPW/gp25~SPTR: Phage baseplate assembly protein W%3B~PFAM: Gene 25-like lysozyme gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2563 Tresu_2564 Tresu_2564 Tresu_2564 1306 4272 + hypothetical protein KEGG: hoh:Hoch_3608 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Baseplate J-like protein~TIGRFAM: conserved hypothetical protein%2C phage tail-like region gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2564 Tresu_2565 Tresu_2565 Tresu_2565 4275 4769 + hypothetical protein gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2565 Tresu_2566 Tresu_2566 Tresu_2566 4786 5991 + tail sheath protein COGs: COG3497 Phage tail sheath protein FI~InterPro IPR007067~KEGG: hoh:Hoch_3656 tail sheath protein~SPTR: Tail sheath protein%3B~PFAM: Phage tail sheath protein gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2566 Tresu_2567 Tresu_2567 Tresu_2567 6046 6474 + Conserved hypothetical protein CHP02241%2C phage tail region protein InterPro IPR011747~KEGG: pca:Pcar_2895 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~PFAM: T4-like virus tail tube protein gp19~TIGRFAM: conserved hypothetical phage tail region protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2567 Tresu_2568 Tresu_2568 Tresu_2568 6519 7817 + hypothetical protein gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2568 Tresu_2569 Tresu_2569 Tresu_2569 7796 8215 + hypothetical protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2569 Tresu_2570 Tresu_2570 Tresu_2570 8218 8625 + protein of unknown function DUF1257 InterPro IPR009666~KEGG: hoh:Hoch_3616 hypothetical protein~PFAM: Uncharacterised protein family Ycf35~SPTR: Putative uncharacterized protein%3B~PFAM: Protein of unknown function (DUF1257) gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2570 Tresu_2571 Tresu_2571 Tresu_2571 8616 9428 + phage tail protein InterPro IPR011748~KEGG: hoh:Hoch_3609 phage tail protein~SPTR: Phage tail protein%3B~TIGRFAM: Phage tail protein~PFAM: Phage tail protein (Tail_P2_I)~TIGRFAM: phage tail protein domain gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2571 Tresu_2572 Tresu_2572 Tresu_2572 9438 11441 + hypothetical protein KEGG: ttu:TERTU_3732 PaaR motif protein~SPTR: PAAR motif protein%3B~PFAM: Phage-related baseplate assembly protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2572 Tresu_2573 Tresu_2573 Tresu_2573 11438 11575 + hypothetical protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2573 Tresu_2574 Tresu_2574 Tresu_2574 11576 15064 + Peptidase M23 InterPro IPR016047~KEGG: pfa:PFC0235w conserved Plasmodium protein%2C unknown function~PFAM: Peptidase M23~SPTR: GRIP and coiled-coil domain-containing protein PFC0235w%3B~PFAM: Peptidase family M23 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2574 Tresu_2575 Tresu_2575 Tresu_2575 15061 16170 + hypothetical protein KEGG: tde:TDE0546 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2575 Tresu_2576 Tresu_2576 Tresu_2576 16202 16723 + hypothetical protein KEGG: gsu:GSU0983 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage-related baseplate assembly protein gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2576 Tresu_2577 Tresu_2577 Tresu_2577 16720 18060 + hypothetical protein KEGG: ttu:TERTU_3732 PaaR motif protein~SPTR: PAAR motif protein gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2577 Tresu_2578 Tresu_2578 Tresu_2578 18105 18983 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584~KEGG: cph:Cpha266_2112 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~PFAM: Integrase core domain gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2578 Tresu_2579 Tresu_2579 Tresu_2579 19014 19304 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~PFAM: Transposase gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2579 Tresu_2580 Tresu_2580 Tresu_2580 19355 20359 + Peptidase M23 InterPro IPR016047~KEGG: ddf:DEFDS_1597 peptidase M23/M37 family~PFAM: Peptidase M23~SPTR: M23 peptidase domain protein%3B~PFAM: Peptidase family M23 gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2580 Tresu_2581 Tresu_2581 Tresu_2581 20356 21522 + SH3 type 3 domain protein InterPro IPR013247~KEGG: tde:TDE0546 hypothetical protein~PFAM: SH3%2C type 3~SPTR: Putative uncharacterized protein gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2581 Tresu_2582 Tresu_2582 Tresu_2582 21527 22309 + hypothetical protein KEGG: ttu:TERTU_3732 PaaR motif protein~SPTR: Putative uncharacterized protein gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2582 Tresu_2583 Tresu_2583 Tresu_2583 22293 23231 - hypothetical protein KEGG: bpb:bpr_I2173 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2583 Tresu_2584 Tresu_2584 Tresu_2584 23231 24034 - protein of unknown function DUF955 InterPro IPR010359~KEGG: bpb:bpr_I2174 hypothetical protein~PFAM: Protein of unknown function DUF955~SPTR: Putative uncharacterized protein%3B~PFAM: Domain of unknown function (DUF955) gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2584 Tresu_2585 Tresu_2585 Tresu_2585 24034 24396 - HTH domain-containing protein KEGG: bpb:bpr_I2175 HTH domain-containing protein~SPTR: HTH domain-containing protein gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2585 Tresu_2586 Tresu_2586 Tresu_2586 24573 26093 + hypothetical protein KEGG: hoh:Hoch_3610 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2586 Tresu_2587 Tresu_2587 Tresu_2587 26109 26477 + Forkhead-associated protein InterPro IPR000253~KEGG: gbr:Gbro_0031 forkhead-associated protein~PFAM: Forkhead-associated (FHA) domain~SPTR: Forkhead-associated protein%3B~PFAM: FHA domain gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2587 Tresu_2588 Tresu_2588 Tresu_2588 26488 27645 + von Willebrand factor type A InterPro IPR002035~KEGG: amt:Amet_1755 von Willebrand factor%2C type A~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A~SPTR: von Willebrand factor%2C type A%3B~PFAM: von Willebrand factor type A domain gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2588 Tresu_2589 Tresu_2589 Tresu_2589 27655 29139 + tail sheath protein COGs: COG3497 Phage tail sheath protein FI~InterPro IPR007067~KEGG: fre:Franean1_3816 tail sheath protein~SPTR: Phage tail sheath protein%3B~PFAM: Phage tail sheath protein gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2589 Tresu_2590 Tresu_2590 Tresu_2590 29164 29604 + Conserved hypothetical protein CHP02241%2C phage tail region protein InterPro IPR011747~KEGG: noc:Noc_1873 phage tail region protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~PFAM: T4-like virus tail tube protein gp19~TIGRFAM: conserved hypothetical phage tail region protein gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2590 Tresu_2591 Tresu_2591 Tresu_2591 29628 30248 + hypothetical protein KEGG: gsu:GSU0981 hypothetical protein~SPTR: Peptidoglycan-binding lysin domain protein gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2591 Tresu_2592 Tresu_2592 Tresu_2592 30272 32008 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: rrs:RoseRS_1663 rhs element Vgr protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage late control gene D protein (GPD) gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2592 Tresu_2593 Tresu_2593 Tresu_2593 32010 32651 + hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2593 Tresu_2594 Tresu_2594 Tresu_2594 32710 33087 + hypothetical protein gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2594 Tresu_2595 Tresu_2595 Tresu_2595 33343 33891 + hypothetical protein gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2595 Tresu_2596 Tresu_2596 Tresu_2596 33956 34711 + hypothetical protein gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2596 Tresu_2597 Tresu_2597 Tresu_2597 34714 35922 + hypothetical protein KEGG: pwa:Pecwa_4259 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2597 Tresu_2598 Tresu_2598 Tresu_2598 35943 36857 + hypothetical protein SPTR: Putative uncharacterized protein gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2598 Tresu_2599 Tresu_2599 Tresu_2599 36914 37768 + hypothetical protein KEGG: ypi:YpsIP31758_2491 hypothetical protein~SPTR: Conserved domain protein%3B~PFAM: Protein of unknown function (DUF3289) gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2599 Tresu_2600 Tresu_2600 Tresu_2600 37765 38262 + hypothetical protein gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2600 Tresu_2601 Tresu_2601 Tresu_2601 38275 38529 + hypothetical protein gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2601 Tresu_2602 Tresu_2602 Tresu_2602 38522 38881 + hypothetical protein gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2602 Tresu_2603 Tresu_2603 Tresu_2603 38921 39802 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584~KEGG: cph:Cpha266_2112 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~PFAM: Integrase core domain gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2603 Tresu_2604 Tresu_2604 Tresu_2604 39829 40119 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~PFAM: Transposase gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2604 Tresu_2605 Tresu_2605 Tresu_2605 40567 40926 + hypothetical protein gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2605 Tresu_2606 Tresu_2606 Tresu_2606 40923 41294 + hypothetical protein gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2606 Tresu_2607 Tresu_2607 Tresu_2607 41270 41467 + hypothetical protein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2607 Tresu_2608 Tresu_2608 Tresu_2608 41563 43416 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage late control gene D protein (GPD) gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2608 Tresu_2609 Tresu_2609 Tresu_2609 43435 44328 + hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2609 Tresu_2610 Tresu_2610 Tresu_2610 44371 45165 + hypothetical protein gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2610 Tresu_2611 Tresu_2611 Tresu_2611 45186 45707 + hypothetical protein gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2611 Tresu_2612 Tresu_2612 Tresu_2612 45704 46258 + hypothetical protein gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2612 Tresu_2613 Tresu_2613 Tresu_2613 46758 48494 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage late control gene D protein (GPD) gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2613 Tresu_2614 Tresu_2614 Tresu_2614 48498 49451 + hypothetical protein KEGG: ypy:YPK_2589 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2614 Tresu_2615 Tresu_2615 Tresu_2615 49448 49900 + hypothetical protein gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2615 Tresu_2616 Tresu_2616 Tresu_2616 50028 51071 + pseudogene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2616 Tresu_2617 Tresu_2617 Tresu_2617 51085 52410 + hypothetical protein COGs: COG3179 chitinase~KEGG: abc:ACICU_03562 chitinase~SPTR: Predicted chitinase gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2617 Tresu_2618 Tresu_2618 Tresu_2618 52422 52634 + hypothetical protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2618 Tresu_2619 Tresu_2619 Tresu_2619 52655 52945 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~PFAM: Transposase gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2619 Tresu_2620 Tresu_2620 Tresu_2620 52972 53853 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584~KEGG: cph:Cpha266_2112 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~PFAM: Integrase core domain gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2620 Tresu_2621 Tresu_2621 Tresu_2621 53901 54440 + hypothetical protein gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2621 Tresu_2622 Tresu_2622 Tresu_2622 54536 56215 + hypothetical protein COGs: COG3500 Phage protein D~KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage late control gene D protein (GPD) gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2622 Tresu_2623 Tresu_2623 Tresu_2623 56208 57179 + hypothetical protein KEGG: cvi:CV_2125 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2623 Tresu_2624 Tresu_2624 Tresu_2624 57176 57886 + hypothetical protein gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2624 Tresu_2625 Tresu_2625 Tresu_2625 57973 59055 + hypothetical protein gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2625 Tresu_2626 Tresu_2626 Tresu_2626 59168 61033 + hypothetical protein KEGG: npu:Npun_F1409 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Phage late control gene D protein (GPD) gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2626 Tresu_2627 Tresu_2627 Tresu_2627 61035 61892 + hypothetical protein gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2627 Tresu_2628 Tresu_2628 Tresu_2628 61976 62521 + Radical SAM domain protein COGs: COG0602 Organic radical activating protein~InterPro IPR007197~KEGG: amr:AM1_0457 anaerobic ribonucleoside-triphosphate reductase activating protein~PFAM: Radical SAM~SPTR: Anaerobic ribonucleoside-triphosphate reductase-activating protein%3B~manually curated~PFAM: Radical SAM superfamily~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2628 Tresu_2629 Tresu_2629 Tresu_2629 62545 64068 + AAA ATPase central domain protein COGs: COG0464 ATPase of the AAA+ class~InterPro IPR003959:IPR003593~KEGG: hoh:Hoch_3615 AAA ATPase central domain protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: AAA ATPase central domain protein%3B~PFAM: ATPase family associated with various cellular activities (AAA) gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2629 Tresu_2630 Tresu_2630 Tresu_2630 64086 66137 + hypothetical protein KEGG: ttu:TERTU_3732 PaaR motif protein~SPTR: PAAR motif protein%3B~PFAM: Phage-related baseplate assembly protein gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2630 Tresu_2631 Tresu_2631 Tresu_2631 66150 69644 + hypothetical protein gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2631 Tresu_2632 Tresu_2632 Tresu_2632 69659 70129 + hypothetical protein gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2632 Tresu_2633 Tresu_2633 Tresu_2633 70219 70428 + hypothetical protein gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2633 Tresu_2634 Tresu_2634 Tresu_2634 70412 70720 + hypothetical protein gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2634 Tresu_2635 Tresu_2635 Tresu_2635 71074 71745 + Ankyrin InterPro IPR002110~KEGG: tva:TVAG_496720 ankyrin repeat protein~PFAM: Ankyrin repeat~SMART: Ankyrin repeat~SPTR: Ankyrin repeat protein%2C putative%3B~PFAM: Ankyrin repeat gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2635 Tresu_2636 Tresu_2636 Tresu_2636 72054 72371 + hypothetical protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2636 Tresu_2637 Tresu_2637 Tresu_2637 72368 72844 + hypothetical protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2637 Tresu_2638 Tresu_2638 Tresu_2638 72862 75015 + hypothetical protein KEGG: ttu:TERTU_3732 PaaR motif protein~SPTR: PAAR motif protein%3B~PFAM: Phage-related baseplate assembly protein gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2638 Tresu_2639 Tresu_2639 Tresu_2639 75015 77285 + hypothetical protein gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2639 Tresu_2640 Tresu_2640 Tresu_2640 77297 78193 + hypothetical protein KEGG: bmd:BMD_2955 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2640 Tresu_2641 Tresu_2641 Tresu_2641 78190 79221 + hypothetical protein KEGG: bmd:BMD_2955 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2641 Tresu_2642 Tresu_2642 Tresu_2642 79218 80276 + hypothetical protein KEGG: bwe:BcerKBAB4_1156 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2642 Tresu_2643 Tresu_2643 Tresu_2643 80273 81196 + hypothetical protein KEGG: bmd:BMD_2955 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2643 Tresu_2644 Tresu_2644 Tresu_2644 81193 82437 + hypothetical protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2644 Tresu_2645 Tresu_2645 Tresu_2645 82434 83639 + hypothetical protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2645 Tresu_2646 Tresu_2646 Tresu_2646 83667 84119 + pseudogene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2646 Tresu_2647 Tresu_2647 Tresu_2647 84215 84853 + rhs element Vgr protein KEGG: npu:Npun_F1410 rhs element Vgr protein~SPTR: Rhs element Vgr protein%3B~PFAM: Phage-related baseplate assembly protein gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2647 Tresu_2648 Tresu_2648 Tresu_2648 84866 85072 + hypothetical protein KEGG: hoh:Hoch_3617 hypothetical protein~SPTR: Putative uncharacterized protein%3B~PFAM: Protein of unknown function (DUF2997) gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2648 Tresu_2649 Tresu_2649 Tresu_2649 85072 85446 + hypothetical protein KEGG: cce:Ccel_1503 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2649 Tresu_2650 Tresu_2650 Tresu_2650 85446 86192 + hypothetical protein KEGG: ccb:Clocel_2667 pentapeptide repeat protein~SPTR: Pentapeptide repeat protein gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2650 Tresu_2651 Tresu_2651 Tresu_2651 86194 86604 + hypothetical protein gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2651 Tresu_2652 Tresu_2652 Tresu_2652 88091 88279 + pseudogene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2652 Tresu_2653 Tresu_2653 Tresu_2653 86904 88034 + transposase IS4 family protein COGs: COG5433 Transposase~InterPro IPR002559~KEGG: wch:wcw_1896 transposase~PFAM: Transposase%2C IS4-like~SPTR: IS1548%2C transposase%3B~PFAM: Transposase DDE domain gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2653 Tresu_2654 Tresu_2654 Tresu_2654 88354 88503 + hypothetical protein gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2654 Tresu_2655 Tresu_2655 Tresu_2655 88538 91852 + hypothetical protein KEGG: bfo:BRAFLDRAFT_63199 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2655 Tresu_2656 Tresu_2656 Tresu_2656 91849 93105 + hypothetical protein KEGG: pfd:PFDG_03181 conserved hypothetical protein~SPTR: Putative uncharacterized protein gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2656 Tresu_2657 Tresu_2657 Tresu_2657 93102 94166 + hypothetical protein gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2657 Tresu_2658 Tresu_2658 Tresu_2658 94153 94848 + hypothetical protein KEGG: chl:Chy400_2334 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2658 Tresu_2659 Tresu_2659 Tresu_2659 94833 95423 + hypothetical protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2659 Tresu_2660 Tresu_2660 Tresu_2660 95664 96755 + hypothetical protein KEGG: zro:ZYRO0F02750g hypothetical protein gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2660 Tresu_2661 Tresu_2661 Tresu_2661 96745 97473 + hypothetical protein KEGG: rca:Rcas_2828 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2661 Tresu_2662 Tresu_2662 Tresu_2662 97470 98756 + hypothetical protein gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2662 Tresu_2663 Tresu_2663 Tresu_2663 98758 99849 + hypothetical protein KEGG: ssm:Spirs_1192 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2663 Tresu_2664 Tresu_2664 Tresu_2664 99812 101731 + hypothetical protein KEGG: vpo:Kpol_1058p4 hypothetical protein~SPTR: Secreted antigen SagBb gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2664 Tresu_2665 Tresu_2665 Tresu_2665 101734 102486 + hypothetical protein KEGG: amr:AM1_2540 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2665 Tresu_2666 Tresu_2666 Tresu_2666 102474 104036 + hypothetical protein KEGG: cai:Caci_5394 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2666 Tresu_2667 Tresu_2667 Tresu_2667 104043 104423 + hypothetical protein KEGG: lmh:LMHCC_1812 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2667 Tresu_2668 Tresu_2668 Tresu_2668 104712 105041 + hypothetical protein gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2668 Tresu_2669 Tresu_2669 Tresu_2669 105062 105610 + hypothetical protein gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2669 Tresu_2670 Tresu_2670 Tresu_2670 105690 106571 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584~KEGG: cph:Cpha266_2112 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~PFAM: Integrase core domain gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2670 Tresu_2671 Tresu_2671 Tresu_2671 106598 106888 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~PFAM: Transposase gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2671 Tresu_2672 Tresu_2672 Tresu_2672 107208 107687 + pseudogene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2672 Tresu_2673 Tresu_2673 Tresu_2673 107758 108048 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: lby:Lbys_0266 transposase IS3/is911 family protein~PFAM: Transposase IS3/IS911family~SPTR: Putative uncharacterized protein%3B~PFAM: Transposase gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2673 Tresu_2674 Tresu_2674 Tresu_2674 108075 108956 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584~KEGG: cph:Cpha266_2112 integrase catalytic subunit~PFAM: Integrase%2C catalytic core~SPTR: Integrase%2C catalytic region%3B~PFAM: Integrase core domain gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2674 Tresu_2675 Tresu_2675 Tresu_2675 110206 116133 - Ig domain protein group 2 domain protein InterPro IPR003343~KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein~PFAM: Bacterial Ig-like%2C group 2~SPTR: Ig domain protein group 2 domain protein%3B~PFAM: Bacterial Ig-like domain (group 2) gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2675 Tresu_2676 Tresu_2676 Tresu_2676 116181 117617 - conjugation TrbI family protein COGs: COG2948 Type IV secretory pathway VirB10 protein~InterPro IPR005498~KEGG: paa:Paes_2355 conjugation TrbI family protein~PFAM: Type IV secretion system%2C VirB10 / TraB / TrbI~SPTR: Conjugation TrbI family protein%3B~PFAM: Bacterial conjugation TrbI-like protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2676 Tresu_2677 Tresu_2677 Tresu_2677 117614 118693 - Conjugal transfer protein TrbG/VirB9/CagX COGs: COG3504 Type IV secretory pathway VirB9 protein~InterPro IPR010258~KEGG: paa:Paes_2354 P-type conjugative transfer protein TrbG~PFAM: Conjugal transfer%2C TrbG/VirB9/CagX~SPTR: P-type conjugative transfer protein TrbG%3B~PFAM: Conjugal transfer protein~TIGRFAM: P-type conjugative transfer protein TrbG gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2677 Tresu_2678 Tresu_2678 Tresu_2678 118734 119438 - pseudogene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2678 Tresu_2679 Tresu_2679 Tresu_2679 119591 120115 + hypothetical protein KEGG: fsu:Fisuc_2165 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2679 Tresu_2680 Tresu_2680 Tresu_2680 120119 120331 + hypothetical protein SPTR: Putative uncharacterized protein gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2680 Tresu_2681 Tresu_2681 Tresu_2681 120388 121584 - hypothetical protein KEGG: gdj:Gdia_1601 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2681 Tresu_2682 Tresu_2682 Tresu_2682 121928 123700 + DNA topoisomerase COGs: COG0550 Topoisomerase IA~InterPro IPR006171:IPR013497:IPR003601:IPR003602~KEGG: dat:HRM2_25900 TopB~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~SPTR: DNA topoisomerase%3B~PFAM: Toprim domain%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase III%2C bacteria and conjugative plasmid gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2682 Tresu_2683 Tresu_2683 Tresu_2683 123697 123849 + hypothetical protein gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2683 Tresu_2684 Tresu_2684 Tresu_2684 123910 124479 - hypothetical protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2684 Tresu_2685 Tresu_2685 Tresu_2685 124510 125346 - hypothetical protein gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2685 Tresu_2686 Tresu_2686 Tresu_2686 125499 126119 + putative phage repressor COGs: COG2932 transcriptional regulator protein~InterPro IPR019759~KEGG: eum:ECUMN_0588 regulatory protein CI from bacteriophage origin~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Prophage MuMc02%2C peptidase%2C family S24%3B~PFAM: Peptidase S24-like gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2686 Tresu_2687 Tresu_2687 Tresu_2687 126355 126609 + hypothetical protein gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2687 Tresu_2688 Tresu_2688 Tresu_2688 126599 127423 + hypothetical protein gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2688 Tresu_2689 Tresu_2689 Tresu_2689 127514 127810 - plasmid maintenance system antidote protein%2C XRE family COGs: COG3093 Plasmid maintenance system antidote protein~InterPro IPR001387:IPR013430~KEGG: tde:TDE1610 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Addiction module antidote protein%2C HigA family%3B~TIGRFAM: Addiction module antidote protein%2C HigA~PFAM: Helix-turn-helix~TIGRFAM: addiction module antidote protein%2C HigA family gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2689 Tresu_2690 Tresu_2690 Tresu_2690 127820 128101 - plasmid maintenance system killer COGs: COG3549 Plasmid maintenance system killer protein~InterPro IPR007711~KEGG: mar:MAE_38920 plasmid maintenance system killer~PFAM: Plasmid maintenance system killer~SPTR: Toxin-antitoxin system%2C toxin component%2C RelE family%3B~PFAM: Plasmid maintenance system killer protein gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2690 Tresu_2691 Tresu_2691 Tresu_2691 128501 129130 - hypothetical protein gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2691 Tresu_2692 Tresu_2692 Tresu_2692 129149 129451 - hypothetical protein gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2692 Tresu_2693 Tresu_2693 Tresu_2693 129564 129794 - hypothetical protein gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2693 Tresu_2694 Tresu_2694 Tresu_2694 129925 131142 + putative GTP-binding protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: dhd:Dhaf_0124 putative GTP-binding protein~SPTR: Putative uncharacterized protein gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2694 Tresu_2695 Tresu_2695 Tresu_2695 131293 133335 + TRAG family protein COGs: COG3505 Type IV secretory pathway VirD4 protein~InterPro IPR003688~KEGG: cpb:Cphamn1_0686 conjugal transfer coupling protein TraG~PFAM: Ti-type conjugative transfer system%2C TraG-like~SPTR: TRAG family protein%3B~PFAM: TraG/TraD family gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2695 Tresu_2696 Tresu_2696 Tresu_2696 133345 133776 + hypothetical protein gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2696 Tresu_2697 Tresu_2697 Tresu_2697 133776 134708 + Sigma 54 interacting domain protein COGs: COG4962 Flp pilus assembly protein ATPase CpaF~InterPro IPR001482~KEGG: paa:Paes_2346 P-type conjugative transfer ATPase TrbB~PFAM: Type II secretion system protein E~SPTR: P-type conjugative transfer ATPase TrbB%3B~PFAM: Type II/IV secretion system protein gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2697 Tresu_2698 Tresu_2698 Tresu_2698 134760 135125 + hypothetical protein PFAM: TrbC/VIRB2 family gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2698 Tresu_2699 Tresu_2699 Tresu_2699 135177 136308 + pseudogene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2699 Tresu_2700 Tresu_2700 Tresu_2700 136519 136782 + type IV secretory pathway VirB3 family protein InterPro IPR007792~PFAM: Type IV secretion system%2C VirB3 / TrbD / AvhB~PFAM: Type IV secretory pathway%2C VirB3-like protein gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2700 Tresu_2701 Tresu_2701 Tresu_2701 136779 139355 + CagE%2C TrbE%2C VirB component of type IV transporter system%2C conserved region COGs: COG3451 Type IV secretory pathway VirB4 protein~InterPro IPR018145~KEGG: paa:Paes_1717 conjugal transfer ATPase TrbE~PFAM: CagE%2C TrbE%2C VirB component of type IV transporter system%2C central domain~SPTR: CagE TrbE VirB component of type IV transporter system%3B~PFAM: Domain of unknown function DUF87%3B CagE%2C TrbE%2C VirB family%2C component of type IV transporter system~TIGRFAM: type IV secretion/conjugal transfer ATPase%2C VirB4 family gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2701 Tresu_2702 Tresu_2702 Tresu_2702 139380 140306 + hypothetical protein gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2702 Tresu_2703 Tresu_2703 Tresu_2703 140272 141312 + hypothetical protein gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2703 Tresu_2704 Tresu_2704 Tresu_2704 141676 142587 - hypothetical protein KEGG: fjo:Fjoh_0919 hypothetical protein~SPTR: Putative uncharacterized protein gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2704 Tresu_2705 Tresu_2705 Tresu_2705 142604 142933 - hypothetical protein gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2705 Tresu_2706 Tresu_2706 Tresu_2706 143257 144234 + hypothetical protein KEGG: gdj:Gdia_0961 conjugal transfer protein TrbL~SPTR: P-type conjugative transfer protein TrbL%3B~PFAM: TrbL/VirB6 plasmid conjugal transfer protein gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2706 Tresu_2707 Tresu_2707 Tresu_2707 144527 145408 - hypothetical protein KEGG: cqu:CpipJ_CPIJ015899 myosin heavy chain~SPTR: Myosin heavy chain gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2707 Tresu_2708 Tresu_2708 Tresu_2708 145405 145701 - hypothetical protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2708 Tresu_2709 Tresu_2709 Tresu_2709 145714 145929 - hypothetical protein gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2709 Tresu_2710 Tresu_2710 Tresu_2710 145926 146261 - hypothetical protein PFAM: Single-strand binding protein family gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2710 Tresu_2711 Tresu_2711 Tresu_2711 146592 147644 - hypothetical protein SPTR: Putative uncharacterized protein gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2711 Tresu_2712 Tresu_2712 Tresu_2712 147631 147897 - hypothetical protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2712 Tresu_2713 Tresu_2713 Tresu_2713 147897 148193 - hypothetical protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2713 Tresu_2714 Tresu_2714 Tresu_2714 148183 148995 - ParB domain protein nuclease InterPro IPR003115~KEGG: dat:HRM2_38800 putative plasmid replication/partition related protein ParB~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: Putative plasmid replication/partition related protein ParB%3B~PFAM: ParB-like nuclease domain gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2714 Tresu_2715 Tresu_2715 Tresu_2715 148995 149666 - hypothetical protein COGs: COG1192 ATPase involved in chromosome partitioning~KEGG: bre:BRE_2008 PF32 plasmid partition protein~SPTR: Cobyrinic acid a%2Cc-diamide synthase%3B~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2715 Tresu_2716 Tresu_2716 Tresu_2716 150337 151089 + Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: bhy:BHWA1_02684 plasmid partition protein~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: Plasmid partition protein%3B~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2716 Tresu_2717 Tresu_2717 Tresu_2717 151106 151477 + hypothetical protein gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2717 Tresu_2718 Tresu_2718 Tresu_2718 151481 152494 + hypothetical protein KEGG: paa:Paes_2404 plasmid encoded RepA protein~SPTR: Replication initiation protein%3B~PFAM: Plasmid encoded RepA protein gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2718 Tresu_2719 Tresu_2719 Tresu_2719 153006 154397 - hypothetical protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2719 Tresu_2720 Tresu_2720 Tresu_2720 154493 160900 - SNF2-related protein InterPro IPR003356:IPR000330:IPR001650:IPR014001~KEGG: chu:CHU_1466 SNF2 family helicase~PFAM: SNF2-related%3B DNA methylase%2C adenine-specific%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal~SPTR: Putative methylase%3B~manually curated~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain%3B Eco57I restriction endonuclease%3B Protein of unknown function (DUF2466) gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2720 Tresu_2721 Tresu_2721 Tresu_2721 161127 164030 - pseudogene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2721 Tresu_2722 Tresu_2722 Tresu_2722 163954 164643 - hypothetical protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2722 Tresu_2723 Tresu_2723 Tresu_2723 164741 165508 - hypothetical protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_2723 Tresu_R0001 Tresu_R0001 Tresu_R0001 25346 25418 - tRNA-Ala IMG reference gene:2504606924 tRNA gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0001 Tresu_R0002 Tresu_R0002 Tresu_R0002 63273 63343 + tRNA-Gly IMG reference gene:2504606957 tRNA gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0002 Tresu_R0003 Tresu_R0003 Tresu_R0003 127042 127115 - tRNA-Val IMG reference gene:2504607021 tRNA gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0003 Tresu_R0004 Tresu_R0004 Tresu_R0004 147051 147124 + tRNA-Met IMG reference gene:2504607040 tRNA gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0004 Tresu_R0005 Tresu_R0005 Tresu_R0005 210357 210429 + tRNA-Met IMG reference gene:2504607098 tRNA gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0005 Tresu_R0006 Tresu_R0006 Tresu_R0006 463015 464545 + 16S ribosomal RNA IMG reference gene:2504607334 rRNA gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0006 Tresu_R0007 Tresu_R0007 Tresu_R0007 464631 464704 + tRNA-Ala IMG reference gene:2504607335 tRNA gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0007 Tresu_R0008 Tresu_R0008 Tresu_R0008 464783 467728 + 23S ribosomal RNA IMG reference gene:2504607336 rRNA gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0008 Tresu_R0009 Tresu_R0009 Tresu_R0009 467775 467884 + 5S ribosomal RNA IMG reference gene:2504607337 rRNA gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0009 Tresu_R0010 Tresu_R0010 Tresu_R0010 473308 473380 + tRNA-Asn IMG reference gene:2504607343 tRNA gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0010 Tresu_R0011 Tresu_R0011 Tresu_R0011 480721 480794 + tRNA-Asp IMG reference gene:2504607351 tRNA gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0011 Tresu_R0012 Tresu_R0012 Tresu_R0012 862611 862682 + tRNA-Cys IMG reference gene:2504607730 tRNA gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0012 Tresu_R0013 Tresu_R0013 Tresu_R0013 973137 974667 + 16S ribosomal RNA IMG reference gene:2504607829 rRNA gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0013 Tresu_R0014 Tresu_R0014 Tresu_R0014 974753 974826 + tRNA-Ala IMG reference gene:2504607830 tRNA gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0014 Tresu_R0015 Tresu_R0015 Tresu_R0015 974905 977851 + 23S ribosomal RNA IMG reference gene:2504607831 rRNA gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0015 Tresu_R0016 Tresu_R0016 Tresu_R0016 977898 978007 + 5S ribosomal RNA IMG reference gene:2504607832 rRNA gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0016 Tresu_R0017 Tresu_R0017 Tresu_R0017 1053601 1053688 - tRNA-Leu IMG reference gene:2504607903 tRNA gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0017 Tresu_R0018 Tresu_R0018 Tresu_R0018 1094402 1094483 + tRNA-Leu IMG reference gene:2504607948 tRNA gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0018 Tresu_R0019 Tresu_R0019 Tresu_R0019 1102239 1102311 - tRNA-Pro IMG reference gene:2504607957 tRNA gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0019 Tresu_R0020 Tresu_R0020 Tresu_R0020 1102347 1102420 - tRNA-Asp IMG reference gene:2504607958 tRNA gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0020 Tresu_R0021 Tresu_R0021 Tresu_R0021 1129479 1131009 + 16S ribosomal RNA IMG reference gene:2504607988 rRNA gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0021 Tresu_R0022 Tresu_R0022 Tresu_R0022 1131110 1131183 + tRNA-Ile IMG reference gene:2504607989 tRNA gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0022 Tresu_R0023 Tresu_R0023 Tresu_R0023 1131262 1134206 + 23S ribosomal RNA IMG reference gene:2504607990 rRNA gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0023 Tresu_R0024 Tresu_R0024 Tresu_R0024 1134253 1134362 + 5S ribosomal RNA IMG reference gene:2504607991 rRNA gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0024 Tresu_R0025 Tresu_R0025 Tresu_R0025 1237681 1238010 + helix-turn-helix domain protein InterPro IPR001387~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~tmRNA as predicted by Rfam (RF00023)%2C score 136.35~IMG reference gene:2504608087~PFAM: Helix-turn-helix gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0025 Tresu_R0026 Tresu_R0026 Tresu_R0026 1263235 1263309 + tRNA-Glu IMG reference gene:2504608107 tRNA gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0026 Tresu_R0027 Tresu_R0027 Tresu_R0027 1272079 1272187 + 5S ribosomal RNA IMG reference gene:2504608116 rRNA gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0027 Tresu_R0028 Tresu_R0028 Tresu_R0028 1296295 1296368 + tRNA-Arg IMG reference gene:2504608137 tRNA gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0028 Tresu_R0029 Tresu_R0029 Tresu_R0029 1316194 1316266 - tRNA-Phe IMG reference gene:2504608160 tRNA gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0029 Tresu_R0030 Tresu_R0030 Tresu_R0030 1317431 1317503 - tRNA-Pro IMG reference gene:2504608162 tRNA gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0030 Tresu_R0031 Tresu_R0031 Tresu_R0031 1317512 1317585 - tRNA-Val IMG reference gene:2504608163 tRNA gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0031 Tresu_R0032 Tresu_R0032 Tresu_R0032 1328742 1329136 + RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 219.54~IMG reference gene:2504608176 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0032 Tresu_R0033 Tresu_R0033 Tresu_R0033 1344036 1344119 + tRNA-Leu IMG reference gene:2504608187 tRNA gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0033 Tresu_R0034 Tresu_R0034 Tresu_R0034 1390089 1390160 + tRNA-His IMG reference gene:2504608230 tRNA gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0034 Tresu_R0035 Tresu_R0035 Tresu_R0035 1390192 1390265 + tRNA-Arg IMG reference gene:2504608231 tRNA gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0035 Tresu_R0036 Tresu_R0036 Tresu_R0036 1390273 1390345 + tRNA-Lys IMG reference gene:2504608232 tRNA gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0036 Tresu_R0037 Tresu_R0037 Tresu_R0037 1390385 1390465 + tRNA-Leu IMG reference gene:2504608233 tRNA gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0037 Tresu_R0038 Tresu_R0038 Tresu_R0038 1390520 1390591 + tRNA-Gly IMG reference gene:2504608234 tRNA gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0038 Tresu_R0039 Tresu_R0039 Tresu_R0039 1390640 1390714 + tRNA-Gly IMG reference gene:2504608235 tRNA gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0039 Tresu_R0040 Tresu_R0040 Tresu_R0040 1456872 1456944 + tRNA-Thr IMG reference gene:2504608296 tRNA gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0040 Tresu_R0041 Tresu_R0041 Tresu_R0041 1456951 1457031 + tRNA-Tyr IMG reference gene:2504608297 tRNA gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0041 Tresu_R0042 Tresu_R0042 Tresu_R0042 1488377 1488449 + tRNA-Gly IMG reference gene:2504608325 tRNA gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0042 Tresu_R0043 Tresu_R0043 Tresu_R0043 1522429 1522501 + tRNA-Met IMG reference gene:2504608363 tRNA gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0043 Tresu_R0044 Tresu_R0044 Tresu_R0044 1628062 1628133 - tRNA-Glu IMG reference gene:2504608448 tRNA gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0044 Tresu_R0045 Tresu_R0045 Tresu_R0045 1628170 1628240 - tRNA-Gln IMG reference gene:2504608449 tRNA gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0045 Tresu_R0046 Tresu_R0046 Tresu_R0046 1636654 1636731 - tRNA-Arg IMG reference gene:2504608458 tRNA gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0046 Tresu_R0047 Tresu_R0047 Tresu_R0047 1926391 1926463 + tRNA-Lys IMG reference gene:2504608745 tRNA gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0047 Tresu_R0048 Tresu_R0048 Tresu_R0048 1958236 1958308 - tRNA-Gln IMG reference gene:2504608772 tRNA gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0048 Tresu_R0049 Tresu_R0049 Tresu_R0049 2223513 2223595 - tRNA-Leu IMG reference gene:2504609028 tRNA gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0049 Tresu_R0050 Tresu_R0050 Tresu_R0050 2317618 2317691 + tRNA-Pro IMG reference gene:2504609112 tRNA gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0050 Tresu_R0051 Tresu_R0051 Tresu_R0051 2446823 2446895 - tRNA-Thr IMG reference gene:2504609243 tRNA gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0051 Tresu_R0052 Tresu_R0052 Tresu_R0052 2531239 2531348 - 5S ribosomal RNA IMG reference gene:2504609318 rRNA gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0052 Tresu_R0053 Tresu_R0053 Tresu_R0053 2531395 2534339 - 23S ribosomal RNA IMG reference gene:2504609319 rRNA gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0053 Tresu_R0054 Tresu_R0054 Tresu_R0054 2534418 2534491 - tRNA-Ile IMG reference gene:2504609320 tRNA gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0054 Tresu_R0055 Tresu_R0055 Tresu_R0055 2534592 2536122 - 16S ribosomal RNA IMG reference gene:2504609321 rRNA gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0055 Tresu_R0056 Tresu_R0056 Tresu_R0056 2558988 2559093 - RNA component of signal recognition particle IMG reference gene:2504609346 gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0056 Tresu_R0057 Tresu_R0057 Tresu_R0057 2559098 2559184 - tRNA-Ser IMG reference gene:2504609347 tRNA gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0057 Tresu_R0058 Tresu_R0058 Tresu_R0058 2559249 2559323 - tRNA-Arg IMG reference gene:2504609348 tRNA gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0058 Tresu_R0059 Tresu_R0059 Tresu_R0059 2559371 2559460 - tRNA-Ser IMG reference gene:2504609349 tRNA gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0059 Tresu_R0060 Tresu_R0060 Tresu_R0060 2559485 2559569 - tRNA-Ser IMG reference gene:2504609350 tRNA gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0060 Tresu_R0061 Tresu_R0061 Tresu_R0061 2595146 2595219 - tRNA-Ala IMG reference gene:2504609383 tRNA gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0061 Tresu_R0062 Tresu_R0062 Tresu_R0062 2628701 2628773 - tRNA-Trp IMG reference gene:2504609429 tRNA gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0062 Tresu_R0063 Tresu_R0063 Tresu_R0063 2629019 2629091 - tRNA-Thr IMG reference gene:2504609431 tRNA gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0063 Tresu_R0064 Tresu_R0064 Tresu_R0064 2725007 2725080 - tRNA-Val IMG reference gene:2504609521 tRNA gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=Tresu_R0064