locus-tag class description FY034_00005 PF00308 Bacterial dnaA protein FY034_00005 PF08299 Bacterial dnaA protein helix-turn-helix FY034_00005 PF11638 DnaA N-terminal domain FY034_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FY034_00010 PF02767 DNA polymerase III beta subunit, central domain FY034_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FY034_00015 PF02463 RecF/RecN/SMC N terminal domain FY034_00020 PF00204 DNA gyrase B FY034_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FY034_00020 PF18053 DNA gyrase B subunit insert domain FY034_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00020 PF01751 Toprim domain FY034_00025 PF01797 Transposase IS200 like FY034_00030 PF08299 Bacterial dnaA protein helix-turn-helix FY034_00030 PF00308 Bacterial dnaA protein FY034_00030 PF11638 DnaA N-terminal domain FY034_00035 PF00091 Tubulin/FtsZ family, GTPase domain FY034_00035 PF12327 FtsZ family, C-terminal domain FY034_00080 PF01797 Transposase IS200 like FY034_00125 PF03796 DnaB-like helicase C terminal domain FY034_00125 PF00772 DnaB-like helicase N terminal domain FY034_00130 PF03989 DNA gyrase C-terminal domain, beta-propeller FY034_00130 PF00521 DNA gyrase/topoisomerase IV, subunit A FY034_00140 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FY034_00140 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FY034_00150 PF00691 OmpA family FY034_00150 PF13677 Membrane MotB of proton-channel complex MotA/MotB FY034_00155 PF01618 MotA/TolQ/ExbB proton channel family FY034_00165 PF01515 Phosphate acetyl/butaryl transferase FY034_00165 PF07085 DRTGG domain FY034_00175 PF05690 Thiazole biosynthesis protein ThiG FY034_00175 PF02597 ThiS family FY034_00180 PF05690 Thiazole biosynthesis protein ThiG FY034_00185 PF02581 Thiamine monophosphate synthase FY034_00190 PF16199 Radical_SAM C-terminal domain FY034_00190 PF04055 Radical SAM superfamily FY034_00230 PF00072 Response regulator receiver domain FY034_00230 PF01627 Hpt domain FY034_00230 PF00672 HAMP domain FY034_00230 PF00512 His Kinase A (phospho-acceptor) domain FY034_00230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_00230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00235 PF00072 Response regulator receiver domain FY034_00245 PF03707 Bacterial signalling protein N terminal repeat FY034_00245 PF00563 EAL domain FY034_00245 PF00990 Diguanylate cyclase, GGDEF domain FY034_00250 PF02580 D-Tyr-tRNA(Tyr) deacylase FY034_00265 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase FY034_00265 PF00534 Glycosyl transferases group 1 FY034_00275 PF01966 HD domain FY034_00280 PF00072 Response regulator receiver domain FY034_00280 PF00486 Transcriptional regulatory protein, C terminal FY034_00285 PF16527 Two-component sensor protein CpxA, periplasmic domain FY034_00285 PF00672 HAMP domain FY034_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00285 PF00512 His Kinase A (phospho-acceptor) domain FY034_00295 PF01554 MatE FY034_00315 PF11871 Domain of unknown function (DUF3391) FY034_00315 PF01966 HD domain FY034_00320 PF00117 Glutamine amidotransferase class-I FY034_00320 PF03352 Methyladenine glycosylase FY034_00320 PF13302 Acetyltransferase (GNAT) domain FY034_00320 PF13673 Acetyltransferase (GNAT) domain FY034_00320 PF00958 GMP synthase C terminal domain FY034_00340 PF02666 Phosphatidylserine decarboxylase FY034_00360 PF02142 MGS-like domain FY034_00360 PF01808 AICARFT/IMPCHase bienzyme FY034_00380 PF01925 Sulfite exporter TauE/SafE FY034_00385 PF13545 Crp-like helix-turn-helix domain FY034_00385 PF00027 Cyclic nucleotide-binding domain FY034_00400 PF07690 Major Facilitator Superfamily FY034_00405 PF01965 DJ-1/PfpI family FY034_00420 PF00563 EAL domain FY034_00420 PF01590 GAF domain FY034_00420 PF00990 Diguanylate cyclase, GGDEF domain FY034_00420 PF00360 Phytochrome region FY034_00445 PF03193 RsgA GTPase FY034_00450 PF03641 Possible lysine decarboxylase FY034_00455 PF01810 LysE type translocator FY034_00470 PF05872 Bacterial protein of unknown function (DUF853) FY034_00480 PF01869 BadF/BadG/BcrA/BcrD ATPase family FY034_00485 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component FY034_00500 PF07690 Major Facilitator Superfamily FY034_00505 PF00248 Aldo/keto reductase family FY034_00510 PF00144 Beta-lactamase FY034_00525 PF13443 Cro/C1-type HTH DNA-binding domain FY034_00530 PF02678 Pirin FY034_00530 PF05726 Pirin C-terminal cupin domain FY034_00535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY034_00540 PF01627 Hpt domain FY034_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00540 PF00512 His Kinase A (phospho-acceptor) domain FY034_00540 PF00072 Response regulator receiver domain FY034_00570 PF00893 Small Multidrug Resistance protein FY034_00575 PF01209 ubiE/COQ5 methyltransferase family FY034_00630 PF07804 HipA-like C-terminal domain FY034_00645 PF00905 Penicillin binding protein transpeptidase domain FY034_00660 PF00881 Nitroreductase family FY034_00665 PF00881 Nitroreductase family FY034_00675 PF01613 Flavin reductase like domain FY034_00680 PF16925 Tetracyclin repressor-like, C-terminal domain FY034_00680 PF00440 Bacterial regulatory proteins, tetR family FY034_00695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FY034_00695 PF00037 4Fe-4S binding domain FY034_00695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY034_00705 PF04172 LrgB-like family FY034_00710 PF03788 LrgA family FY034_00740 PF16123 Hydroxyacylglutathione hydrolase C-terminus FY034_00740 PF00753 Metallo-beta-lactamase superfamily FY034_00745 PF00989 PAS fold FY034_00745 PF00512 His Kinase A (phospho-acceptor) domain FY034_00745 PF00672 HAMP domain FY034_00745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00745 PF18698 Histidine kinase sensor domain FY034_00750 PF01235 Sodium:alanine symporter family FY034_00755 PF07739 TipAS antibiotic-recognition domain FY034_00755 PF13411 MerR HTH family regulatory protein FY034_00765 PF01814 Hemerythrin HHE cation binding domain FY034_00775 PF00672 HAMP domain FY034_00775 PF01966 HD domain FY034_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00780 PF00512 His Kinase A (phospho-acceptor) domain FY034_00785 PF02954 Bacterial regulatory protein, Fis family FY034_00785 PF00072 Response regulator receiver domain FY034_00785 PF00158 Sigma-54 interaction domain FY034_00790 PF02556 Preprotein translocase subunit SecB FY034_00810 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_00810 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal FY034_00815 PF13247 4Fe-4S dicluster domain FY034_00820 PF03916 Polysulphide reductase, NrfD FY034_00825 PF00374 Nickel-dependent hydrogenase FY034_00830 PF01750 Hydrogenase maturation protease FY034_00835 PF00672 HAMP domain FY034_00835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_00835 PF17202 Single cache domain 3 FY034_00845 PF08212 Lipocalin-like domain FY034_00850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_00850 PF03466 LysR substrate binding domain FY034_00855 PF07690 Major Facilitator Superfamily FY034_00860 PF01139 tRNA-splicing ligase RtcB FY034_00865 PF02834 LigT like Phosphoesterase FY034_00875 PF04715 Anthranilate synthase component I, N terminal region FY034_00875 PF00425 chorismate binding enzyme FY034_00880 PF04480 Protein of unknown function (DUF559) FY034_00885 PF00873 AcrB/AcrD/AcrF family FY034_00890 PF13533 Biotin-lipoyl like FY034_00895 PF00440 Bacterial regulatory proteins, tetR family FY034_00900 PF00072 Response regulator receiver domain FY034_00900 PF00672 HAMP domain FY034_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_00900 PF00512 His Kinase A (phospho-acceptor) domain FY034_00900 PF01627 Hpt domain FY034_00900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_00910 PF12706 Beta-lactamase superfamily domain FY034_00920 PF01741 Large-conductance mechanosensitive channel, MscL FY034_00930 PF13335 Magnesium chelatase, subunit ChlI C-terminal FY034_00930 PF01078 Magnesium chelatase, subunit ChlI FY034_00950 PF00266 Aminotransferase class-V FY034_00955 PF03466 LysR substrate binding domain FY034_00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_00965 PF02661 Fic/DOC family FY034_00965 PF12728 Helix-turn-helix domain FY034_00970 PF01078 Magnesium chelatase, subunit ChlI FY034_00970 PF13335 Magnesium chelatase, subunit ChlI C-terminal FY034_00975 PF02578 Multi-copper polyphenol oxidoreductase laccase FY034_00980 PF09335 SNARE associated Golgi protein FY034_00990 PF00589 Phage integrase family FY034_00990 PF02899 Phage integrase, N-terminal SAM-like domain FY034_01005 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FY034_01005 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FY034_01010 PF01416 tRNA pseudouridine synthase FY034_01015 PF02774 Semialdehyde dehydrogenase, dimerisation domain FY034_01015 PF01118 Semialdehyde dehydrogenase, NAD binding domain FY034_01020 PF00180 Isocitrate/isopropylmalate dehydrogenase FY034_01025 PF02772 S-adenosylmethionine synthetase, central domain FY034_01025 PF00438 S-adenosylmethionine synthetase, N-terminal domain FY034_01025 PF02773 S-adenosylmethionine synthetase, C-terminal domain FY034_01045 PF03692 Putative zinc- or iron-chelating domain FY034_01060 PF05221 S-adenosyl-L-homocysteine hydrolase FY034_01060 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FY034_01065 PF08241 Methyltransferase domain FY034_01070 PF03060 Nitronate monooxygenase FY034_01075 PF01053 Cys/Met metabolism PLP-dependent enzyme FY034_01105 PF12169 DNA polymerase III subunits gamma and tau domain III FY034_01110 PF02575 YbaB/EbfC DNA-binding family FY034_01115 PF02132 RecR protein FY034_01115 PF13662 Toprim domain FY034_01120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FY034_01120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FY034_01120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY034_01120 PF10371 Domain of unknown function FY034_01120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FY034_01125 PF01430 Hsp33 protein FY034_01130 PF12392 Collagenase FY034_01130 PF01136 Peptidase family U32 FY034_01135 PF00565 Staphylococcal nuclease homologue FY034_01140 PF00072 Response regulator receiver domain FY034_01140 PF00486 Transcriptional regulatory protein, C terminal FY034_01145 PF00923 Transaldolase/Fructose-6-phosphate aldolase FY034_01155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FY034_01175 PF05036 Sporulation related domain FY034_01175 PF03330 Lytic transglycolase FY034_01180 PF07993 Male sterility protein FY034_01180 PF00550 Phosphopantetheine attachment site FY034_01185 PF09335 SNARE associated Golgi protein FY034_01205 PF00672 HAMP domain FY034_01205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_01215 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_01215 PF00672 HAMP domain FY034_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_01215 PF01627 Hpt domain FY034_01215 PF00072 Response regulator receiver domain FY034_01215 PF00512 His Kinase A (phospho-acceptor) domain FY034_01220 PF00534 Glycosyl transferases group 1 FY034_01220 PF08323 Starch synthase catalytic domain FY034_01245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_01250 PF12704 MacB-like periplasmic core domain FY034_01250 PF02687 FtsX-like permease family FY034_01250 PF00005 ABC transporter FY034_01255 PF02321 Outer membrane efflux protein FY034_01260 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FY034_01265 PF01040 UbiA prenyltransferase family FY034_01270 PF02384 N-6 DNA Methylase FY034_01270 PF12161 HsdM N-terminal domain FY034_01285 PF13784 Fic/DOC family N-terminal FY034_01285 PF02661 Fic/DOC family FY034_01290 PF18766 SWI2/SNF2 ATPase FY034_01290 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FY034_01290 PF11867 Domain of unknown function (DUF3387) FY034_01300 PF02441 Flavoprotein FY034_01305 PF00258 Flavodoxin FY034_01305 PF00753 Metallo-beta-lactamase superfamily FY034_01310 PF18073 Rubredoxin metal binding domain FY034_01315 PF01258 Prokaryotic dksA/traR C4-type zinc finger FY034_01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_01320 PF00512 His Kinase A (phospho-acceptor) domain FY034_01330 PF09190 DALR domain FY034_01330 PF01406 tRNA synthetases class I (C) catalytic domain FY034_01340 PF00158 Sigma-54 interaction domain FY034_01340 PF00072 Response regulator receiver domain FY034_01340 PF02954 Bacterial regulatory protein, Fis family FY034_01345 PF00483 Nucleotidyl transferase FY034_01370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_01375 PF02594 Uncharacterised ACR, YggU family COG1872 FY034_01385 PF02325 YGGT family FY034_01390 PF00459 Inositol monophosphatase family FY034_01400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY034_01400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY034_01410 PF03747 ADP-ribosylglycohydrolase FY034_01420 PF04055 Radical SAM superfamily FY034_01420 PF02579 Dinitrogenase iron-molybdenum cofactor FY034_01430 PF01797 Transposase IS200 like FY034_01440 PF00682 HMGL-like FY034_01455 PF03960 ArsC family FY034_01460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_01475 PF03707 Bacterial signalling protein N terminal repeat FY034_01475 PF00563 EAL domain FY034_01475 PF00990 Diguanylate cyclase, GGDEF domain FY034_01480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_01495 PF03831 PhnA domain FY034_01495 PF08274 PhnA Zinc-Ribbon FY034_01500 PF02222 ATP-grasp domain FY034_01505 PF00860 Permease family FY034_01535 PF08241 Methyltransferase domain FY034_01550 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY034_01555 PF00005 ABC transporter FY034_01560 PF03459 TOBE domain FY034_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_01565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FY034_01565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FY034_01575 PF00528 Binding-protein-dependent transport system inner membrane component FY034_01580 PF00005 ABC transporter FY034_01580 PF03459 TOBE domain FY034_01585 PF07885 Ion channel FY034_01585 PF02254 TrkA-N domain FY034_01595 PF00155 Aminotransferase class I and II FY034_01600 PF01926 50S ribosome-binding GTPase FY034_01605 PF02649 Type I GTP cyclohydrolase folE2 FY034_01610 PF01048 Phosphorylase superfamily FY034_01620 PF01168 Alanine racemase, N-terminal domain FY034_01625 PF00672 HAMP domain FY034_01625 PF17200 Single Cache domain 2 FY034_01625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_01630 PF02545 Maf-like protein FY034_01640 PF01565 FAD binding domain FY034_01640 PF02913 FAD linked oxidases, C-terminal domain FY034_01645 PF13185 GAF domain FY034_01645 PF02954 Bacterial regulatory protein, Fis family FY034_01645 PF00158 Sigma-54 interaction domain FY034_01655 PF10150 Ribonuclease E/G family FY034_01655 PF00575 S1 RNA binding domain FY034_01670 PF00909 Ammonium Transporter Family FY034_01675 PF00543 Nitrogen regulatory protein P-II FY034_01680 PF00909 Ammonium Transporter Family FY034_01685 PF00543 Nitrogen regulatory protein P-II FY034_01690 PF00355 Rieske [2Fe-2S] domain FY034_01695 PF13396 Phospholipase_D-nuclease N-terminal FY034_01695 PF13091 PLD-like domain FY034_01700 PF00578 AhpC/TSA family FY034_01700 PF10417 C-terminal domain of 1-Cys peroxiredoxin FY034_01715 PF00483 Nucleotidyl transferase FY034_01720 PF01370 NAD dependent epimerase/dehydratase family FY034_01725 PF00291 Pyridoxal-phosphate dependent enzyme FY034_01725 PF13291 ACT domain FY034_01730 PF13361 UvrD-like helicase C-terminal domain FY034_01730 PF00580 UvrD/REP helicase N-terminal domain FY034_01735 PF00849 RNA pseudouridylate synthase FY034_01735 PF01479 S4 domain FY034_01745 PF13180 PDZ domain FY034_01750 PF01381 Helix-turn-helix FY034_01750 PF07883 Cupin domain FY034_01760 PF11066 Protein of unknown function (DUF2867) FY034_01760 PF13460 NAD(P)H-binding FY034_01775 PF02190 ATP-dependent protease La (LON) substrate-binding domain FY034_01775 PF00004 ATPase family associated with various cellular activities (AAA) FY034_01775 PF05362 Lon protease (S16) C-terminal proteolytic domain FY034_01785 PF00005 ABC transporter FY034_01800 PF00675 Insulinase (Peptidase family M16) FY034_01800 PF05193 Peptidase M16 inactive domain FY034_01830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FY034_01830 PF03900 Porphobilinogen deaminase, C-terminal domain FY034_01835 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FY034_01835 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FY034_01835 PF01488 Shikimate / quinate 5-dehydrogenase FY034_01840 PF01578 Cytochrome C assembly protein FY034_01845 PF00085 Thioredoxin FY034_01850 PF00578 AhpC/TSA family FY034_01855 PF00483 Nucleotidyl transferase FY034_01860 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FY034_01860 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FY034_01880 PF00672 HAMP domain FY034_01880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_01880 PF00512 His Kinase A (phospho-acceptor) domain FY034_01880 PF01627 Hpt domain FY034_01880 PF00072 Response regulator receiver domain FY034_01880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_01900 PF00850 Histone deacetylase domain FY034_01910 PF00684 DnaJ central domain FY034_01910 PF00226 DnaJ domain FY034_01910 PF01556 DnaJ C terminal domain FY034_01915 PF01593 Flavin containing amine oxidoreductase FY034_01920 PF04002 RadC-like JAB domain FY034_01925 PF02673 Bacitracin resistance protein BacA FY034_01945 PF01327 Polypeptide deformylase FY034_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_01980 PF08447 PAS fold FY034_01980 PF08448 PAS fold FY034_01990 PF00543 Nitrogen regulatory protein P-II FY034_01995 PF00873 AcrB/AcrD/AcrF family FY034_02000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_02035 PF00005 ABC transporter FY034_02055 PF03741 Integral membrane protein TerC family FY034_02065 PF04011 LemA family FY034_02075 PF01435 Peptidase family M48 FY034_02085 PF00484 Carbonic anhydrase FY034_02090 PF00731 AIR carboxylase FY034_02100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_02100 PF00672 HAMP domain FY034_02100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02100 PF00512 His Kinase A (phospho-acceptor) domain FY034_02100 PF01627 Hpt domain FY034_02100 PF00072 Response regulator receiver domain FY034_02105 PF12729 Four helix bundle sensory module for signal transduction FY034_02105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_02105 PF00672 HAMP domain FY034_02115 PF00672 HAMP domain FY034_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02115 PF01627 Hpt domain FY034_02115 PF00512 His Kinase A (phospho-acceptor) domain FY034_02115 PF00072 Response regulator receiver domain FY034_02115 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_02125 PF00672 HAMP domain FY034_02125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02125 PF00512 His Kinase A (phospho-acceptor) domain FY034_02125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_02125 PF00072 Response regulator receiver domain FY034_02125 PF01627 Hpt domain FY034_02130 PF00672 HAMP domain FY034_02130 PF00072 Response regulator receiver domain FY034_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02130 PF00512 His Kinase A (phospho-acceptor) domain FY034_02130 PF01627 Hpt domain FY034_02130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02135 PF00512 His Kinase A (phospho-acceptor) domain FY034_02135 PF01627 Hpt domain FY034_02135 PF00072 Response regulator receiver domain FY034_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02145 PF01627 Hpt domain FY034_02145 PF00672 HAMP domain FY034_02145 PF00072 Response regulator receiver domain FY034_02145 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_02145 PF00512 His Kinase A (phospho-acceptor) domain FY034_02150 PF00072 Response regulator receiver domain FY034_02150 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_02150 PF01627 Hpt domain FY034_02150 PF00512 His Kinase A (phospho-acceptor) domain FY034_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02150 PF00672 HAMP domain FY034_02155 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_02155 PF00072 Response regulator receiver domain FY034_02155 PF01627 Hpt domain FY034_02155 PF00512 His Kinase A (phospho-acceptor) domain FY034_02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02155 PF00672 HAMP domain FY034_02165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02165 PF08448 PAS fold FY034_02165 PF08447 PAS fold FY034_02170 PF01339 CheB methylesterase FY034_02170 PF00072 Response regulator receiver domain FY034_02175 PF02754 Cysteine-rich domain FY034_02175 PF13183 4Fe-4S dicluster domain FY034_02175 PF02665 Nitrate reductase gamma subunit FY034_02180 PF13237 4Fe-4S dicluster domain FY034_02180 PF00766 Electron transfer flavoprotein FAD-binding domain FY034_02180 PF01012 Electron transfer flavoprotein domain FY034_02185 PF01012 Electron transfer flavoprotein domain FY034_02190 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FY034_02190 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FY034_02195 PF00696 Amino acid kinase family FY034_02195 PF01842 ACT domain FY034_02195 PF13840 ACT domain FY034_02200 PF00593 TonB dependent receptor FY034_02200 PF07715 TonB-dependent Receptor Plug Domain FY034_02210 PF00072 Response regulator receiver domain FY034_02210 PF00672 HAMP domain FY034_02210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_02210 PF01627 Hpt domain FY034_02210 PF00512 His Kinase A (phospho-acceptor) domain FY034_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02215 PF08459 UvrC Helix-hairpin-helix N-terminal FY034_02215 PF01541 GIY-YIG catalytic domain FY034_02215 PF12826 Helix-hairpin-helix motif FY034_02215 PF02151 UvrB/uvrC motif FY034_02220 PF00909 Ammonium Transporter Family FY034_02240 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY034_02245 PF03063 Prismane/CO dehydrogenase family FY034_02250 PF13426 PAS domain FY034_02250 PF08447 PAS fold FY034_02250 PF07536 HWE histidine kinase FY034_02255 PF00072 Response regulator receiver domain FY034_02255 PF00196 Bacterial regulatory proteins, luxR family FY034_02270 PF00672 HAMP domain FY034_02270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_02270 PF17200 Single Cache domain 2 FY034_02275 PF00158 Sigma-54 interaction domain FY034_02275 PF00072 Response regulator receiver domain FY034_02275 PF02954 Bacterial regulatory protein, Fis family FY034_02285 PF00990 Diguanylate cyclase, GGDEF domain FY034_02285 PF01590 GAF domain FY034_02285 PF00360 Phytochrome region FY034_02285 PF00563 EAL domain FY034_02290 PF01865 Protein of unknown function DUF47 FY034_02295 PF01384 Phosphate transporter family FY034_02300 PF00486 Transcriptional regulatory protein, C terminal FY034_02300 PF00072 Response regulator receiver domain FY034_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02305 PF00512 His Kinase A (phospho-acceptor) domain FY034_02305 PF00989 PAS fold FY034_02305 PF16736 Single Cache-like FY034_02310 PF00300 Histidine phosphatase superfamily (branch 1) FY034_02320 PF02541 Ppx/GppA phosphatase family FY034_02335 PF00512 His Kinase A (phospho-acceptor) domain FY034_02335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02335 PF00989 PAS fold FY034_02340 PF00245 Alkaline phosphatase FY034_02345 PF01451 Low molecular weight phosphotyrosine protein phosphatase FY034_02355 PF01627 Hpt domain FY034_02355 PF00072 Response regulator receiver domain FY034_02355 PF00512 His Kinase A (phospho-acceptor) domain FY034_02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_02360 PF00990 Diguanylate cyclase, GGDEF domain FY034_02365 PF00990 Diguanylate cyclase, GGDEF domain FY034_02375 PF02666 Phosphatidylserine decarboxylase FY034_02380 PF00534 Glycosyl transferases group 1 FY034_02380 PF13439 Glycosyltransferase Family 4 FY034_02415 PF02142 MGS-like domain FY034_02420 PF03793 PASTA domain FY034_02420 PF00069 Protein kinase domain FY034_02425 PF03707 Bacterial signalling protein N terminal repeat FY034_02425 PF00990 Diguanylate cyclase, GGDEF domain FY034_02425 PF00563 EAL domain FY034_02445 PF12849 PBP superfamily domain FY034_02450 PF00528 Binding-protein-dependent transport system inner membrane component FY034_02455 PF00528 Binding-protein-dependent transport system inner membrane component FY034_02460 PF00005 ABC transporter FY034_02465 PF01895 PhoU domain FY034_02480 PF04055 Radical SAM superfamily FY034_02505 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) FY034_02510 PF04055 Radical SAM superfamily FY034_02510 PF02579 Dinitrogenase iron-molybdenum cofactor FY034_02515 PF12838 4Fe-4S dicluster domain FY034_02520 PF02579 Dinitrogenase iron-molybdenum cofactor FY034_02525 PF00148 Nitrogenase component 1 type Oxidoreductase FY034_02565 PF14403 Circularly permuted ATP-grasp type 2 FY034_02570 PF00148 Nitrogenase component 1 type Oxidoreductase FY034_02570 PF11844 Domain of unknown function (DUF3364) FY034_02575 PF00148 Nitrogenase component 1 type Oxidoreductase FY034_02580 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family FY034_02590 PF01575 MaoC like domain FY034_02595 PF14489 QueF-like protein FY034_02605 PF03741 Integral membrane protein TerC family FY034_02615 PF02621 Menaquinone biosynthesis FY034_02620 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FY034_02630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FY034_02630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY034_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_02635 PF01568 Molydopterin dinucleotide binding domain FY034_02635 PF13237 4Fe-4S dicluster domain FY034_02635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY034_02635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FY034_02635 PF00384 Molybdopterin oxidoreductase FY034_02645 PF00873 AcrB/AcrD/AcrF family FY034_02655 PF04055 Radical SAM superfamily FY034_02655 PF00919 Uncharacterized protein family UPF0004 FY034_02655 PF01938 TRAM domain FY034_02665 PF12327 FtsZ family, C-terminal domain FY034_02665 PF00091 Tubulin/FtsZ family, GTPase domain FY034_02670 PF02491 SHS2 domain inserted in FTSA FY034_02675 PF03799 Cell division protein FtsQ FY034_02675 PF08478 POTRA domain, FtsQ-type FY034_02680 PF07478 D-ala D-ala ligase C-terminus FY034_02680 PF01820 D-ala D-ala ligase N-terminus FY034_02685 PF01565 FAD binding domain FY034_02685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FY034_02690 PF01225 Mur ligase family, catalytic domain FY034_02690 PF02875 Mur ligase family, glutamate ligase domain FY034_02690 PF08245 Mur ligase middle domain FY034_02695 PF03033 Glycosyltransferase family 28 N-terminal domain FY034_02695 PF04101 Glycosyltransferase family 28 C-terminal domain FY034_02700 PF01098 Cell cycle protein FY034_02705 PF08245 Mur ligase middle domain FY034_02705 PF02875 Mur ligase family, glutamate ligase domain FY034_02710 PF00953 Glycosyl transferase family 4 FY034_02710 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FY034_02715 PF02875 Mur ligase family, glutamate ligase domain FY034_02715 PF08245 Mur ligase middle domain FY034_02715 PF01225 Mur ligase family, catalytic domain FY034_02720 PF01225 Mur ligase family, catalytic domain FY034_02720 PF08245 Mur ligase middle domain FY034_02720 PF02875 Mur ligase family, glutamate ligase domain FY034_02725 PF03793 PASTA domain FY034_02725 PF00905 Penicillin binding protein transpeptidase domain FY034_02725 PF03717 Penicillin-binding Protein dimerisation domain FY034_02730 PF04977 Septum formation initiator FY034_02735 PF01795 MraW methylase family FY034_02740 PF02381 MraZ protein, putative antitoxin-like FY034_02765 PF05593 RHS Repeat FY034_02765 PF03527 RHS protein FY034_02765 PF14220 Domain of unknown function (DUF4329) FY034_02830 PF00990 Diguanylate cyclase, GGDEF domain FY034_02830 PF03707 Bacterial signalling protein N terminal repeat FY034_02830 PF00563 EAL domain FY034_02850 PF01784 NIF3 (NGG1p interacting factor 3) FY034_02860 PF08207 Elongation factor P (EF-P) KOW-like domain FY034_02860 PF01132 Elongation factor P (EF-P) OB domain FY034_02860 PF09285 Elongation factor P, C-terminal FY034_02880 PF00490 Delta-aminolevulinic acid dehydratase FY034_02885 PF00691 OmpA family FY034_02885 PF05736 OprF membrane domain FY034_02900 PF12557 Cob(I)alamin adenosyltransferase N terminal FY034_02900 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FY034_02910 PF12732 YtxH-like protein FY034_02930 PF00639 PPIC-type PPIASE domain FY034_02930 PF09312 SurA N-terminal domain FY034_02940 PF17757 UvrB interaction domain FY034_02940 PF03461 TRCF domain FY034_02940 PF00271 Helicase conserved C-terminal domain FY034_02940 PF02559 CarD-like/TRCF domain FY034_02940 PF00270 DEAD/DEAH box helicase FY034_02950 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_02950 PF12804 MobA-like NTP transferase domain FY034_02955 PF00563 EAL domain FY034_02955 PF00990 Diguanylate cyclase, GGDEF domain FY034_02955 PF03707 Bacterial signalling protein N terminal repeat FY034_02960 PF17755 UvrA DNA-binding domain FY034_02960 PF17760 UvrA interaction domain FY034_02985 PF00672 HAMP domain FY034_02985 PF07228 Stage II sporulation protein E (SpoIIE) FY034_02990 PF13378 Enolase C-terminal domain-like FY034_02990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FY034_03010 PF00465 Iron-containing alcohol dehydrogenase FY034_03015 PF00005 ABC transporter FY034_03020 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_03025 PF13458 Periplasmic binding protein FY034_03030 PF00933 Glycosyl hydrolase family 3 N terminal domain FY034_03030 PF01915 Glycosyl hydrolase family 3 C-terminal domain FY034_03040 PF03306 Alpha-acetolactate decarboxylase FY034_03045 PF00933 Glycosyl hydrolase family 3 N terminal domain FY034_03100 PF03781 Sulfatase-modifying factor enzyme 1 FY034_03130 PF00158 Sigma-54 interaction domain FY034_03130 PF00072 Response regulator receiver domain FY034_03130 PF02954 Bacterial regulatory protein, Fis family FY034_03135 PF00528 Binding-protein-dependent transport system inner membrane component FY034_03140 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_03140 PF01464 Transglycosylase SLT domain FY034_03155 PF13581 Histidine kinase-like ATPase domain FY034_03160 PF01740 STAS domain FY034_03165 PF01966 HD domain FY034_03175 PF00912 Transglycosylase FY034_03175 PF00905 Penicillin binding protein transpeptidase domain FY034_03175 PF17092 Penicillin-binding protein OB-like domain FY034_03210 PF12111 Polyribonucleotide phosphorylase C terminal FY034_03210 PF10150 Ribonuclease E/G family FY034_03210 PF00575 S1 RNA binding domain FY034_03215 PF00152 tRNA synthetases class II (D, K and N) FY034_03215 PF01336 OB-fold nucleic acid binding domain FY034_03220 PF02687 FtsX-like permease family FY034_03220 PF12704 MacB-like periplasmic core domain FY034_03225 PF00005 ABC transporter FY034_03230 PF01103 Surface antigen FY034_03230 PF07244 Surface antigen variable number repeat FY034_03240 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FY034_03240 PF14602 Hexapeptide repeat of succinyl-transferase FY034_03240 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_03245 PF07977 FabA-like domain FY034_03250 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_03250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FY034_03255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FY034_03255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY034_03260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_03265 PF02684 Lipid-A-disaccharide synthetase FY034_03275 PF01569 PAP2 superfamily FY034_03280 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FY034_03285 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FY034_03290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FY034_03295 PF16363 GDP-mannose 4,6 dehydratase FY034_03300 PF00005 ABC transporter FY034_03300 PF00664 ABC transporter transmembrane region FY034_03305 PF00535 Glycosyl transferase family 2 FY034_03315 PF00535 Glycosyl transferase family 2 FY034_03340 PF13439 Glycosyltransferase Family 4 FY034_03340 PF00534 Glycosyl transferases group 1 FY034_03355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_03365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FY034_03375 PF00899 ThiF family FY034_03380 PF00990 Diguanylate cyclase, GGDEF domain FY034_03395 PF00672 HAMP domain FY034_03395 PF00512 His Kinase A (phospho-acceptor) domain FY034_03395 PF00989 PAS fold FY034_03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_03400 PF00072 Response regulator receiver domain FY034_03405 PF01380 SIS domain FY034_03415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FY034_03420 PF01634 ATP phosphoribosyltransferase FY034_03425 PF00815 Histidinol dehydrogenase FY034_03430 PF00155 Aminotransferase class I and II FY034_03440 PF00475 Imidazoleglycerol-phosphate dehydratase FY034_03450 PF03030 Inorganic H+ pyrophosphatase FY034_03475 PF02754 Cysteine-rich domain FY034_03480 PF00072 Response regulator receiver domain FY034_03485 PF01593 Flavin containing amine oxidoreductase FY034_03520 PF00989 PAS fold FY034_03520 PF13188 PAS domain FY034_03520 PF00512 His Kinase A (phospho-acceptor) domain FY034_03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_03525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FY034_03530 PF03841 L-seryl-tRNA selenium transferase FY034_03530 PF12390 Selenocysteine synthase N terminal FY034_03535 PF00392 Bacterial regulatory proteins, gntR family FY034_03535 PF07729 FCD domain FY034_03550 PF01370 NAD dependent epimerase/dehydratase family FY034_03560 PF01909 Nucleotidyltransferase domain FY034_03565 PF01368 DHH family FY034_03565 PF12627 Probable RNA and SrmB- binding site of polymerase A FY034_03565 PF02272 DHHA1 domain FY034_03565 PF01743 Poly A polymerase head domain FY034_03565 PF00571 CBS domain FY034_03570 PF07690 Major Facilitator Superfamily FY034_03570 PF00083 Sugar (and other) transporter FY034_03580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FY034_03580 PF00925 GTP cyclohydrolase II FY034_03590 PF08447 PAS fold FY034_03590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_03590 PF13426 PAS domain FY034_03595 PF00158 Sigma-54 interaction domain FY034_03595 PF06505 Activator of aromatic catabolism FY034_03595 PF02954 Bacterial regulatory protein, Fis family FY034_03595 PF02830 V4R domain FY034_03600 PF04055 Radical SAM superfamily FY034_03600 PF06463 Molybdenum Cofactor Synthesis C FY034_03605 PF03453 MoeA N-terminal region (domain I and II) FY034_03605 PF03454 MoeA C-terminal region (domain IV) FY034_03605 PF00994 Probable molybdopterin binding domain FY034_03615 PF01568 Molydopterin dinucleotide binding domain FY034_03615 PF00384 Molybdopterin oxidoreductase FY034_03640 PF12804 MobA-like NTP transferase domain FY034_03650 PF00230 Major intrinsic protein FY034_03660 PF18152 DAHP synthase ferredoxin-like domain FY034_03660 PF00793 DAHP synthetase I family FY034_03665 PF00171 Aldehyde dehydrogenase family FY034_03675 PF03205 Molybdopterin guanine dinucleotide synthesis protein B FY034_03685 PF00158 Sigma-54 interaction domain FY034_03685 PF06505 Activator of aromatic catabolism FY034_03685 PF02830 V4R domain FY034_03685 PF02954 Bacterial regulatory protein, Fis family FY034_03705 PF00753 Metallo-beta-lactamase superfamily FY034_03705 PF12706 Beta-lactamase superfamily domain FY034_03710 PF01613 Flavin reductase like domain FY034_03715 PF13847 Methyltransferase domain FY034_03725 PF02348 Cytidylyltransferase FY034_03735 PF00994 Probable molybdopterin binding domain FY034_03740 PF01967 MoaC family FY034_03745 PF01810 LysE type translocator FY034_03750 PF00384 Molybdopterin oxidoreductase FY034_03750 PF01568 Molydopterin dinucleotide binding domain FY034_03755 PF04055 Radical SAM superfamily FY034_03755 PF06463 Molybdenum Cofactor Synthesis C FY034_03760 PF02743 Cache domain FY034_03760 PF00672 HAMP domain FY034_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_03770 PF13247 4Fe-4S dicluster domain FY034_03775 PF00384 Molybdopterin oxidoreductase FY034_03775 PF01568 Molydopterin dinucleotide binding domain FY034_03780 PF07690 Major Facilitator Superfamily FY034_03785 PF07690 Major Facilitator Superfamily FY034_03805 PF02416 mttA/Hcf106 family FY034_03815 PF04205 FMN-binding domain FY034_03815 PF00890 FAD binding domain FY034_03820 PF06505 Activator of aromatic catabolism FY034_03820 PF02830 V4R domain FY034_03820 PF00158 Sigma-54 interaction domain FY034_03820 PF02954 Bacterial regulatory protein, Fis family FY034_03825 PF03358 NADPH-dependent FMN reductase FY034_03825 PF04205 FMN-binding domain FY034_03825 PF00890 FAD binding domain FY034_03830 PF00890 FAD binding domain FY034_03830 PF14537 Cytochrome c3 FY034_03835 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY034_03855 PF01116 Fructose-bisphosphate aldolase class-II FY034_03865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_03875 PF03601 Conserved hypothetical protein 698 FY034_03880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_03880 PF03466 LysR substrate binding domain FY034_03885 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FY034_03890 PF02641 Uncharacterized ACR, COG1993 FY034_03900 PF02548 Ketopantoate hydroxymethyltransferase FY034_03905 PF02569 Pantoate-beta-alanine ligase FY034_03910 PF00282 Pyridoxal-dependent decarboxylase conserved domain FY034_03915 PF00465 Iron-containing alcohol dehydrogenase FY034_03920 PF00512 His Kinase A (phospho-acceptor) domain FY034_03920 PF00672 HAMP domain FY034_03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_03920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_03920 PF00072 Response regulator receiver domain FY034_03920 PF01627 Hpt domain FY034_03925 PF01979 Amidohydrolase family FY034_03930 PF13426 PAS domain FY034_03930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_03930 PF08447 PAS fold FY034_03935 PF00990 Diguanylate cyclase, GGDEF domain FY034_03935 PF00072 Response regulator receiver domain FY034_03950 PF01467 Cytidylyltransferase-like FY034_03950 PF00294 pfkB family carbohydrate kinase FY034_03955 PF13580 SIS domain FY034_03970 PF08264 Anticodon-binding domain of tRNA FY034_03970 PF00133 tRNA synthetases class I (I, L, M and V) FY034_03970 PF06827 Zinc finger found in FPG and IleRS FY034_03975 PF01252 Signal peptidase (SPase) II FY034_03990 PF00730 HhH-GPD superfamily base excision DNA repair protein FY034_03990 PF14815 NUDIX domain FY034_03990 PF00633 Helix-hairpin-helix motif FY034_04000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FY034_04015 PF02163 Peptidase family M50 FY034_04015 PF17820 PDZ domain FY034_04020 PF17209 Hfq protein FY034_04030 PF08676 MutL C terminal dimerisation domain FY034_04030 PF01119 DNA mismatch repair protein, C-terminal domain FY034_04040 PF04452 RNA methyltransferase FY034_04050 PF03618 Kinase/pyrophosphorylase FY034_04055 PF00072 Response regulator receiver domain FY034_04055 PF00486 Transcriptional regulatory protein, C terminal FY034_04060 PF13180 PDZ domain FY034_04065 PF12801 4Fe-4S binding domain FY034_04080 PF00962 Adenosine/AMP deaminase FY034_04085 PF00561 alpha/beta hydrolase fold FY034_04090 PF00890 FAD binding domain FY034_04090 PF04205 FMN-binding domain FY034_04130 PF01926 50S ribosome-binding GTPase FY034_04130 PF01018 GTP1/OBG FY034_04135 PF01472 PUA domain FY034_04135 PF00696 Amino acid kinase family FY034_04145 PF03979 Sigma-70 factor, region 1.1 FY034_04145 PF00140 Sigma-70 factor, region 1.2 FY034_04145 PF04546 Sigma-70, non-essential region FY034_04145 PF04545 Sigma-70, region 4 FY034_04145 PF04539 Sigma-70 region 3 FY034_04145 PF04542 Sigma-70 region 2 FY034_04150 PF10410 DnaB-helicase binding domain of primase FY034_04150 PF01807 CHC2 zinc finger FY034_04150 PF08275 DNA primase catalytic core, N-terminal domain FY034_04160 PF01165 Ribosomal protein S21 FY034_04165 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FY034_04170 PF00977 Histidine biosynthesis protein FY034_04175 PF00977 Histidine biosynthesis protein FY034_04180 PF00117 Glutamine amidotransferase class-I FY034_04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_04185 PF08447 PAS fold FY034_04185 PF13426 PAS domain FY034_04190 PF02092 Glycyl-tRNA synthetase beta subunit FY034_04190 PF05746 DALR anticodon binding domain FY034_04195 PF02091 Glycyl-tRNA synthetase alpha subunit FY034_04200 PF00291 Pyridoxal-phosphate dependent enzyme FY034_04205 PF07497 Rho termination factor, RNA-binding domain FY034_04205 PF07498 Rho termination factor, N-terminal domain FY034_04205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY034_04210 PF01197 Ribosomal protein L31 FY034_04215 PF02511 Thymidylate synthase complementing protein FY034_04220 PF07136 Protein of unknown function (DUF1385) FY034_04225 PF03462 PCRF domain FY034_04225 PF00472 RF-1 domain FY034_04230 PF05175 Methyltransferase small domain FY034_04230 PF17827 PrmC N-terminal domain FY034_04235 PF00156 Phosphoribosyl transferase domain FY034_04240 PF00860 Permease family FY034_04260 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY034_04265 PF08402 TOBE domain FY034_04265 PF00005 ABC transporter FY034_04285 PF00512 His Kinase A (phospho-acceptor) domain FY034_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_04285 PF09308 LuxQ, periplasmic FY034_04285 PF00072 Response regulator receiver domain FY034_04290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_04290 PF17200 Single Cache domain 2 FY034_04290 PF00672 HAMP domain FY034_04295 PF02335 Cytochrome c552 FY034_04300 PF03264 NapC/NirT cytochrome c family, N-terminal region FY034_04305 PF03063 Prismane/CO dehydrogenase family FY034_04315 PF00440 Bacterial regulatory proteins, tetR family FY034_04320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_04330 PF00005 ABC transporter FY034_04340 PF12801 4Fe-4S binding domain FY034_04360 PF00989 PAS fold FY034_04360 PF00512 His Kinase A (phospho-acceptor) domain FY034_04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_04375 PF00578 AhpC/TSA family FY034_04380 PF00158 Sigma-54 interaction domain FY034_04380 PF00072 Response regulator receiver domain FY034_04380 PF02954 Bacterial regulatory protein, Fis family FY034_04390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY034_04390 PF01568 Molydopterin dinucleotide binding domain FY034_04390 PF00384 Molybdopterin oxidoreductase FY034_04395 PF12800 4Fe-4S binding domain FY034_04395 PF12838 4Fe-4S dicluster domain FY034_04400 PF00037 4Fe-4S binding domain FY034_04400 PF12801 4Fe-4S binding domain FY034_04415 PF02335 Cytochrome c552 FY034_04420 PF00072 Response regulator receiver domain FY034_04420 PF01627 Hpt domain FY034_04420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_04420 PF00512 His Kinase A (phospho-acceptor) domain FY034_04420 PF00672 HAMP domain FY034_04420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_04425 PF00990 Diguanylate cyclase, GGDEF domain FY034_04425 PF03707 Bacterial signalling protein N terminal repeat FY034_04425 PF00563 EAL domain FY034_04435 PF01551 Peptidase family M23 FY034_04435 PF10145 Phage-related minor tail protein FY034_04435 PF01464 Transglycosylase SLT domain FY034_04440 PF13361 UvrD-like helicase C-terminal domain FY034_04440 PF00580 UvrD/REP helicase N-terminal domain FY034_04450 PF01507 Phosphoadenosine phosphosulfate reductase family FY034_04455 PF00009 Elongation factor Tu GTP binding domain FY034_04460 PF01925 Sulfite exporter TauE/SafE FY034_04465 PF11798 IMS family HHH motif FY034_04465 PF11799 impB/mucB/samB family C-terminal domain FY034_04465 PF00817 impB/mucB/samB family FY034_04470 PF10415 Fumarase C C-terminus FY034_04470 PF00206 Lyase FY034_04480 PF00563 EAL domain FY034_04480 PF08668 HDOD domain FY034_04495 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FY034_04495 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FY034_04495 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FY034_04500 PF00860 Permease family FY034_04510 PF00012 Hsp70 protein FY034_04555 PF00156 Phosphoribosyl transferase domain FY034_04560 PF03979 Sigma-70 factor, region 1.1 FY034_04560 PF04542 Sigma-70 region 2 FY034_04560 PF04545 Sigma-70, region 4 FY034_04560 PF00140 Sigma-70 factor, region 1.2 FY034_04560 PF04539 Sigma-70 region 3 FY034_04570 PF01975 Survival protein SurE FY034_04575 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_04575 PF16197 Ketoacyl-synthetase C-terminal extension FY034_04575 PF08659 KR domain FY034_04575 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_04575 PF00550 Phosphopantetheine attachment site FY034_04575 PF09277 Erythronolide synthase, docking FY034_04575 PF08990 Erythronolide synthase docking FY034_04575 PF14765 Polyketide synthase dehydratase FY034_04575 PF00698 Acyl transferase domain FY034_04575 PF08240 Alcohol dehydrogenase GroES-like domain FY034_04585 PF17785 PUA-like domain FY034_04585 PF10672 S-adenosylmethionine-dependent methyltransferase FY034_04625 PF00158 Sigma-54 interaction domain FY034_04625 PF01590 GAF domain FY034_04630 PF01553 Acyltransferase FY034_04645 PF01066 CDP-alcohol phosphatidyltransferase FY034_04670 PF01553 Acyltransferase FY034_04670 PF13193 AMP-binding enzyme C-terminal domain FY034_04670 PF00501 AMP-binding enzyme FY034_04695 PF00849 RNA pseudouridylate synthase FY034_04700 PF00593 TonB dependent receptor FY034_04700 PF07715 TonB-dependent Receptor Plug Domain FY034_04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_04710 PF00072 Response regulator receiver domain FY034_04710 PF00512 His Kinase A (phospho-acceptor) domain FY034_04710 PF18415 Histidine kinase receptor ArcB trans-membrane domain FY034_04710 PF01627 Hpt domain FY034_04710 PF00989 PAS fold FY034_04715 PF00072 Response regulator receiver domain FY034_04720 PF08029 HisG, C-terminal domain FY034_04720 PF01634 ATP phosphoribosyltransferase FY034_04725 PF01502 Phosphoribosyl-AMP cyclohydrolase FY034_04730 PF08447 PAS fold FY034_04730 PF13426 PAS domain FY034_04730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_04760 PF13676 TIR domain FY034_04830 PF03796 DnaB-like helicase C terminal domain FY034_04830 PF00772 DnaB-like helicase N terminal domain FY034_04870 PF00239 Resolvase, N terminal domain FY034_04870 PF02796 Helix-turn-helix domain of resolvase FY034_04885 PF13356 Arm DNA-binding domain FY034_04885 PF00589 Phage integrase family FY034_04905 PF03485 Arginyl tRNA synthetase N terminal domain FY034_04905 PF05746 DALR anticodon binding domain FY034_04905 PF00750 tRNA synthetases class I (R) FY034_04920 PF01370 NAD dependent epimerase/dehydratase family FY034_04925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FY034_04925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FY034_04925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FY034_04930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY034_04935 PF01520 N-acetylmuramoyl-L-alanine amidase FY034_04935 PF11741 AMIN domain FY034_04950 PF05188 MutS domain II FY034_04950 PF05192 MutS domain III FY034_04950 PF01624 MutS domain I FY034_04950 PF05190 MutS family domain IV FY034_04950 PF00488 MutS domain V FY034_04960 PF02613 Nitrate reductase delta subunit FY034_04965 PF13247 4Fe-4S dicluster domain FY034_04965 PF00037 4Fe-4S binding domain FY034_04970 PF00384 Molybdopterin oxidoreductase FY034_04970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY034_04970 PF01568 Molydopterin dinucleotide binding domain FY034_04975 PF02954 Bacterial regulatory protein, Fis family FY034_04975 PF00158 Sigma-54 interaction domain FY034_04975 PF00072 Response regulator receiver domain FY034_04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_04980 PF00512 His Kinase A (phospho-acceptor) domain FY034_04980 PF00989 PAS fold FY034_04990 PF01022 Bacterial regulatory protein, arsR family FY034_04995 PF01758 Sodium Bile acid symporter family FY034_05000 PF00563 EAL domain FY034_05000 PF00990 Diguanylate cyclase, GGDEF domain FY034_05000 PF08448 PAS fold FY034_05005 PF12804 MobA-like NTP transferase domain FY034_05010 PF03205 Molybdopterin guanine dinucleotide synthesis protein B FY034_05015 PF04055 Radical SAM superfamily FY034_05015 PF06463 Molybdenum Cofactor Synthesis C FY034_05045 PF01022 Bacterial regulatory protein, arsR family FY034_05055 PF01545 Cation efflux family FY034_05065 PF06508 Queuosine biosynthesis protein QueC FY034_05070 PF01654 Cytochrome bd terminal oxidase subunit I FY034_05075 PF02322 Cytochrome bd terminal oxidase subunit II FY034_05090 PF01515 Phosphate acetyl/butaryl transferase FY034_05095 PF00291 Pyridoxal-phosphate dependent enzyme FY034_05100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FY034_05105 PF00291 Pyridoxal-phosphate dependent enzyme FY034_05110 PF01842 ACT domain FY034_05110 PF00742 Homoserine dehydrogenase FY034_05110 PF03447 Homoserine dehydrogenase, NAD binding domain FY034_05115 PF01029 NusB family FY034_05120 PF00885 6,7-dimethyl-8-ribityllumazine synthase FY034_05130 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family FY034_05135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_05135 PF00672 HAMP domain FY034_05135 PF17200 Single Cache domain 2 FY034_05140 PF01835 MG2 domain FY034_05140 PF00207 Alpha-2-macroglobulin family FY034_05140 PF07703 Alpha-2-macroglobulin bait region domain FY034_05140 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain FY034_05140 PF07678 A-macroglobulin TED domain FY034_05180 PF04055 Radical SAM superfamily FY034_05180 PF06969 HemN C-terminal domain FY034_05185 PF00034 Cytochrome c FY034_05185 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FY034_05185 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FY034_05200 PF00717 Peptidase S24-like FY034_05200 PF01726 LexA DNA binding domain FY034_05210 PF04453 LPS transport system D FY034_05210 PF03968 OstA-like protein FY034_05215 PF02875 Mur ligase family, glutamate ligase domain FY034_05215 PF08245 Mur ligase middle domain FY034_05220 PF17848 Acetyl-coA carboxylase zinc finger domain FY034_05220 PF01039 Carboxyl transferase domain FY034_05225 PF00290 Tryptophan synthase alpha chain FY034_05230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_05230 PF08447 PAS fold FY034_05230 PF13426 PAS domain FY034_05245 PF00902 Sec-independent protein translocase protein (TatC) FY034_05250 PF17876 Cold shock domain FY034_05250 PF08206 Ribonuclease B OB domain FY034_05250 PF00773 RNB domain FY034_05250 PF00575 S1 RNA binding domain FY034_05285 PF13307 Helicase C-terminal domain FY034_05285 PF04851 Type III restriction enzyme, res subunit FY034_05285 PF00929 Exonuclease FY034_05290 PF00589 Phage integrase family FY034_05290 PF13356 Arm DNA-binding domain FY034_05305 PF01709 Transcriptional regulator FY034_05310 PF01625 Peptide methionine sulfoxide reductase FY034_05315 PF02075 Crossover junction endodeoxyribonuclease RuvC FY034_05320 PF07499 RuvA, C-terminal domain FY034_05320 PF01330 RuvA N terminal domain FY034_05360 PF04011 LemA family FY034_05365 PF04193 PQ loop repeat FY034_05370 PF00588 SpoU rRNA Methylase family FY034_05390 PF01515 Phosphate acetyl/butaryl transferase FY034_05390 PF03949 Malic enzyme, NAD binding domain FY034_05390 PF00390 Malic enzyme, N-terminal domain FY034_05395 PF00480 ROK family FY034_05410 PF04542 Sigma-70 region 2 FY034_05410 PF08281 Sigma-70, region 4 FY034_05440 PF03934 Type II secretion system (T2SS), protein K FY034_05445 PF07963 Prokaryotic N-terminal methylation motif FY034_05445 PF11612 Type II secretion system (T2SS), protein J FY034_05460 PF07963 Prokaryotic N-terminal methylation motif FY034_05460 PF08334 Type II secretion system (T2SS), protein G FY034_05465 PF00482 Type II secretion system (T2SS), protein F FY034_05470 PF00437 Type II/IV secretion system protein FY034_05475 PF00263 Bacterial type II and III secretion system protein FY034_05475 PF03958 Bacterial type II/III secretion system short domain FY034_05490 PF13472 GDSL-like Lipase/Acylhydrolase family FY034_05495 PF00990 Diguanylate cyclase, GGDEF domain FY034_05495 PF08448 PAS fold FY034_05525 PF00072 Response regulator receiver domain FY034_05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_05525 PF00512 His Kinase A (phospho-acceptor) domain FY034_05525 PF09308 LuxQ, periplasmic FY034_05530 PF03975 CheD chemotactic sensory transduction FY034_05560 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FY034_05560 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FY034_05565 PF03099 Biotin/lipoate A/B protein ligase family FY034_05565 PF02237 Biotin protein ligase C terminal domain FY034_05565 PF08279 HTH domain FY034_05570 PF03309 Type III pantothenate kinase FY034_05575 PF00679 Elongation factor G C-terminus FY034_05575 PF14492 Elongation Factor G, domain II FY034_05575 PF03764 Elongation factor G, domain IV FY034_05575 PF00009 Elongation factor Tu GTP binding domain FY034_05575 PF03144 Elongation factor Tu domain 2 FY034_05595 PF02308 MgtC family FY034_05610 PF02811 PHP domain FY034_05615 PF10576 Iron-sulfur binding domain of endonuclease III FY034_05615 PF00730 HhH-GPD superfamily base excision DNA repair protein FY034_05615 PF00633 Helix-hairpin-helix motif FY034_05620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY034_05620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY034_05630 PF04539 Sigma-70 region 3 FY034_05630 PF04542 Sigma-70 region 2 FY034_05630 PF04545 Sigma-70, region 4 FY034_05630 PF00140 Sigma-70 factor, region 1.2 FY034_05655 PF03144 Elongation factor Tu domain 2 FY034_05655 PF03143 Elongation factor Tu C-terminal domain FY034_05655 PF00009 Elongation factor Tu GTP binding domain FY034_05660 PF00471 Ribosomal protein L33 FY034_05670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FY034_05675 PF02357 Transcription termination factor nusG FY034_05675 PF00467 KOW motif FY034_05680 PF03946 Ribosomal protein L11, N-terminal domain FY034_05680 PF00298 Ribosomal protein L11, RNA binding domain FY034_05685 PF00687 Ribosomal protein L1p/L10e family FY034_05690 PF00466 Ribosomal protein L10 FY034_05695 PF16320 Ribosomal protein L7/L12 dimerisation domain FY034_05695 PF00542 Ribosomal protein L7/L12 C-terminal domain FY034_05700 PF04563 RNA polymerase beta subunit FY034_05700 PF04565 RNA polymerase Rpb2, domain 3 FY034_05700 PF00562 RNA polymerase Rpb2, domain 6 FY034_05700 PF04560 RNA polymerase Rpb2, domain 7 FY034_05700 PF10385 RNA polymerase beta subunit external 1 domain FY034_05700 PF04561 RNA polymerase Rpb2, domain 2 FY034_05705 PF04998 RNA polymerase Rpb1, domain 5 FY034_05705 PF04997 RNA polymerase Rpb1, domain 1 FY034_05705 PF00623 RNA polymerase Rpb1, domain 2 FY034_05705 PF04983 RNA polymerase Rpb1, domain 3 FY034_05705 PF05000 RNA polymerase Rpb1, domain 4 FY034_05710 PF00164 Ribosomal protein S12/S23 FY034_05715 PF00177 Ribosomal protein S7p/S5e FY034_05720 PF03764 Elongation factor G, domain IV FY034_05720 PF14492 Elongation Factor G, domain II FY034_05720 PF00679 Elongation factor G C-terminus FY034_05720 PF03144 Elongation factor Tu domain 2 FY034_05720 PF00009 Elongation factor Tu GTP binding domain FY034_05725 PF03143 Elongation factor Tu C-terminal domain FY034_05725 PF03144 Elongation factor Tu domain 2 FY034_05725 PF00009 Elongation factor Tu GTP binding domain FY034_05730 PF00338 Ribosomal protein S10p/S20e FY034_05735 PF00297 Ribosomal protein L3 FY034_05740 PF00573 Ribosomal protein L4/L1 family FY034_05745 PF00276 Ribosomal protein L23 FY034_05750 PF00181 Ribosomal Proteins L2, RNA binding domain FY034_05750 PF03947 Ribosomal Proteins L2, C-terminal domain FY034_05755 PF00203 Ribosomal protein S19 FY034_05760 PF00237 Ribosomal protein L22p/L17e FY034_05765 PF07650 KH domain FY034_05765 PF00189 Ribosomal protein S3, C-terminal domain FY034_05770 PF00252 Ribosomal protein L16p/L10e FY034_05775 PF00831 Ribosomal L29 protein FY034_05780 PF00366 Ribosomal protein S17 FY034_05785 PF00238 Ribosomal protein L14p/L23e FY034_05790 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FY034_05790 PF00467 KOW motif FY034_05795 PF00673 ribosomal L5P family C-terminus FY034_05795 PF00281 Ribosomal protein L5 FY034_05800 PF00253 Ribosomal protein S14p/S29e FY034_05805 PF00410 Ribosomal protein S8 FY034_05810 PF00347 Ribosomal protein L6 FY034_05815 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FY034_05820 PF03719 Ribosomal protein S5, C-terminal domain FY034_05820 PF00333 Ribosomal protein S5, N-terminal domain FY034_05825 PF00327 Ribosomal protein L30p/L7e FY034_05830 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FY034_05835 PF00344 SecY translocase FY034_05840 PF05191 Adenylate kinase, active site lid FY034_05845 PF00557 Metallopeptidase family M24 FY034_05850 PF00444 Ribosomal protein L36 FY034_05855 PF00416 Ribosomal protein S13/S18 FY034_05860 PF00411 Ribosomal protein S11 FY034_05865 PF00163 Ribosomal protein S4/S9 N-terminal domain FY034_05865 PF01479 S4 domain FY034_05870 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FY034_05870 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FY034_05870 PF01000 RNA polymerase Rpb3/RpoA insert domain FY034_05875 PF01196 Ribosomal protein L17 FY034_05885 PF00989 PAS fold FY034_05885 PF00512 His Kinase A (phospho-acceptor) domain FY034_05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_05885 PF00672 HAMP domain FY034_05890 PF00158 Sigma-54 interaction domain FY034_05890 PF00072 Response regulator receiver domain FY034_05890 PF02954 Bacterial regulatory protein, Fis family FY034_05895 PF00378 Enoyl-CoA hydratase/isomerase FY034_05900 PF00285 Citrate synthase, C-terminal domain FY034_05905 PF01321 Creatinase/Prolidase N-terminal domain FY034_05905 PF00557 Metallopeptidase family M24 FY034_05920 PF13421 SPFH domain-Band 7 family FY034_05930 PF03109 ABC1 family FY034_05935 PF00501 AMP-binding enzyme FY034_05935 PF13193 AMP-binding enzyme C-terminal domain FY034_05940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_05945 PF00873 AcrB/AcrD/AcrF family FY034_05950 PF02321 Outer membrane efflux protein FY034_05955 PF00571 CBS domain FY034_05955 PF00478 IMP dehydrogenase / GMP reductase domain FY034_05970 PF00474 Sodium:solute symporter family FY034_05980 PF00474 Sodium:solute symporter family FY034_06005 PF00482 Type II secretion system (T2SS), protein F FY034_06015 PF00437 Type II/IV secretion system protein FY034_06015 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_06020 PF03527 RHS protein FY034_06020 PF05593 RHS Repeat FY034_06070 PF07963 Prokaryotic N-terminal methylation motif FY034_06070 PF00114 Pilin (bacterial filament) FY034_06080 PF03958 Bacterial type II/III secretion system short domain FY034_06080 PF00263 Bacterial type II and III secretion system protein FY034_06115 PF03958 Bacterial type II/III secretion system short domain FY034_06115 PF00263 Bacterial type II and III secretion system protein FY034_06125 PF02687 FtsX-like permease family FY034_06125 PF12704 MacB-like periplasmic core domain FY034_06125 PF00005 ABC transporter FY034_06140 PF05573 NosL FY034_06145 PF04480 Protein of unknown function (DUF559) FY034_06155 PF07715 TonB-dependent Receptor Plug Domain FY034_06155 PF00593 TonB dependent receptor FY034_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06165 PF00512 His Kinase A (phospho-acceptor) domain FY034_06165 PF00989 PAS fold FY034_06165 PF08447 PAS fold FY034_06170 PF02954 Bacterial regulatory protein, Fis family FY034_06170 PF00072 Response regulator receiver domain FY034_06170 PF00158 Sigma-54 interaction domain FY034_06180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_06180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FY034_06200 PF00394 Multicopper oxidase FY034_06200 PF07732 Multicopper oxidase FY034_06200 PF07731 Multicopper oxidase FY034_06200 PF00394 Multicopper oxidase FY034_06200 PF07731 Multicopper oxidase FY034_06200 PF07732 Multicopper oxidase FY034_06210 PF02350 UDP-N-acetylglucosamine 2-epimerase FY034_06215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FY034_06215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FY034_06215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FY034_06245 PF13439 Glycosyltransferase Family 4 FY034_06250 PF01209 ubiE/COQ5 methyltransferase family FY034_06260 PF12464 Maltose acetyltransferase FY034_06260 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_06265 PF00733 Asparagine synthase FY034_06265 PF13537 Glutamine amidotransferase domain FY034_06270 PF03808 Glycosyl transferase WecB/TagA/CpsF family FY034_06275 PF02397 Bacterial sugar transferase FY034_06315 PF01569 PAP2 superfamily FY034_06320 PF01219 Prokaryotic diacylglycerol kinase FY034_06325 PF00483 Nucleotidyl transferase FY034_06340 PF00072 Response regulator receiver domain FY034_06350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_06350 PF00672 HAMP domain FY034_06350 PF01627 Hpt domain FY034_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06350 PF00512 His Kinase A (phospho-acceptor) domain FY034_06350 PF00072 Response regulator receiver domain FY034_06360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_06365 PF00374 Nickel-dependent hydrogenase FY034_06385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_06390 PF00072 Response regulator receiver domain FY034_06390 PF00486 Transcriptional regulatory protein, C terminal FY034_06405 PF00196 Bacterial regulatory proteins, luxR family FY034_06405 PF00072 Response regulator receiver domain FY034_06420 PF00672 HAMP domain FY034_06420 PF07730 Histidine kinase FY034_06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06425 PF00072 Response regulator receiver domain FY034_06425 PF00196 Bacterial regulatory proteins, luxR family FY034_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06435 PF00512 His Kinase A (phospho-acceptor) domain FY034_06435 PF00989 PAS fold FY034_06435 PF13188 PAS domain FY034_06435 PF13426 PAS domain FY034_06440 PF02954 Bacterial regulatory protein, Fis family FY034_06440 PF00158 Sigma-54 interaction domain FY034_06440 PF00072 Response regulator receiver domain FY034_06445 PF00158 Sigma-54 interaction domain FY034_06445 PF02954 Bacterial regulatory protein, Fis family FY034_06445 PF00072 Response regulator receiver domain FY034_06450 PF02954 Bacterial regulatory protein, Fis family FY034_06450 PF00072 Response regulator receiver domain FY034_06450 PF00158 Sigma-54 interaction domain FY034_06455 PF00072 Response regulator receiver domain FY034_06455 PF00196 Bacterial regulatory proteins, luxR family FY034_06460 PF00072 Response regulator receiver domain FY034_06460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06460 PF00512 His Kinase A (phospho-acceptor) domain FY034_06460 PF09308 LuxQ, periplasmic FY034_06465 PF00158 Sigma-54 interaction domain FY034_06465 PF02954 Bacterial regulatory protein, Fis family FY034_06465 PF00072 Response regulator receiver domain FY034_06475 PF00072 Response regulator receiver domain FY034_06475 PF13188 PAS domain FY034_06475 PF08448 PAS fold FY034_06475 PF00512 His Kinase A (phospho-acceptor) domain FY034_06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_06480 PF04143 Sulphur transport FY034_06490 PF03707 Bacterial signalling protein N terminal repeat FY034_06490 PF00563 EAL domain FY034_06490 PF00990 Diguanylate cyclase, GGDEF domain FY034_06495 PF03190 Protein of unknown function, DUF255 FY034_06510 PF13286 Phosphohydrolase-associated domain FY034_06510 PF01966 HD domain FY034_06515 PF01566 Natural resistance-associated macrophage protein FY034_06525 PF13847 Methyltransferase domain FY034_06550 PF00069 Protein kinase domain FY034_06550 PF03793 PASTA domain FY034_06560 PF12401 Protein of unknown function (DUF2662) FY034_06560 PF00498 FHA domain FY034_06565 PF01264 Chorismate synthase FY034_06570 PF01202 Shikimate kinase FY034_06575 PF01761 3-dehydroquinate synthase FY034_06590 PF01220 Dehydroquinase class II FY034_06595 PF01321 Creatinase/Prolidase N-terminal domain FY034_06595 PF00557 Metallopeptidase family M24 FY034_06600 PF00364 Biotin-requiring enzyme FY034_06605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY034_06605 PF02785 Biotin carboxylase C-terminal domain FY034_06605 PF00289 Biotin carboxylase, N-terminal domain FY034_06610 PF01597 Glycine cleavage H-protein FY034_06620 PF02621 Menaquinone biosynthesis FY034_06625 PF00990 Diguanylate cyclase, GGDEF domain FY034_06625 PF00563 EAL domain FY034_06625 PF03707 Bacterial signalling protein N terminal repeat FY034_06630 PF00293 NUDIX domain FY034_06630 PF09297 NADH pyrophosphatase zinc ribbon domain FY034_06640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY034_06640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY034_06640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY034_06640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY034_06645 PF01106 NifU-like domain FY034_06645 PF01592 NifU-like N terminal domain FY034_06645 PF04324 BFD-like [2Fe-2S] binding domain FY034_06650 PF00266 Aminotransferase class-V FY034_06665 PF02817 e3 binding domain FY034_06665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FY034_06665 PF00364 Biotin-requiring enzyme FY034_06675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY034_06675 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_06680 PF00330 Aconitase family (aconitate hydratase) FY034_06685 PF00224 Pyruvate kinase, barrel domain FY034_06685 PF02887 Pyruvate kinase, alpha/beta domain FY034_06715 PF13419 Haloacid dehalogenase-like hydrolase FY034_06725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FY034_06725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FY034_06730 PF00162 Phosphoglycerate kinase FY034_06735 PF00121 Triosephosphate isomerase FY034_06740 PF03840 Preprotein translocase SecG subunit FY034_06760 PF01609 Transposase DDE domain FY034_06765 PF00239 Resolvase, N terminal domain FY034_06765 PF02796 Helix-turn-helix domain of resolvase FY034_06780 PF04002 RadC-like JAB domain FY034_06810 PF00004 ATPase family associated with various cellular activities (AAA) FY034_06810 PF17862 AAA+ lid domain FY034_06810 PF06480 FtsH Extracellular FY034_06810 PF01434 Peptidase family M41 FY034_06840 PF01381 Helix-turn-helix FY034_06845 PF00158 Sigma-54 interaction domain FY034_06850 PF07662 Na+ dependent nucleoside transporter C-terminus FY034_06850 PF01773 Na+ dependent nucleoside transporter N-terminus FY034_06850 PF07670 Nucleoside recognition FY034_06875 PF03144 Elongation factor Tu domain 2 FY034_06875 PF06421 GTP-binding protein LepA C-terminus FY034_06875 PF00679 Elongation factor G C-terminus FY034_06875 PF00009 Elongation factor Tu GTP binding domain FY034_06880 PF10502 Signal peptidase, peptidase S26 FY034_06885 PF02938 GAD domain FY034_06885 PF00152 tRNA synthetases class II (D, K and N) FY034_06885 PF01336 OB-fold nucleic acid binding domain FY034_06890 PF01476 LysM domain FY034_06895 PF03971 Monomeric isocitrate dehydrogenase FY034_06900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FY034_06900 PF00056 lactate/malate dehydrogenase, NAD binding domain FY034_06910 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FY034_06910 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FY034_06910 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FY034_06915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY034_06925 PF00106 short chain dehydrogenase FY034_06930 PF07690 Major Facilitator Superfamily FY034_06935 PF13533 Biotin-lipoyl like FY034_06945 PF01047 MarR family FY034_06960 PF00437 Type II/IV secretion system protein FY034_06960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_06970 PF11104 Type IV pilus assembly protein PilM; FY034_06990 PF07660 Secretin and TonB N terminus short domain FY034_06990 PF00263 Bacterial type II and III secretion system protein FY034_06990 PF03958 Bacterial type II/III secretion system short domain FY034_06990 PF11741 AMIN domain FY034_07005 PF01842 ACT domain FY034_07005 PF00800 Prephenate dehydratase FY034_07005 PF01817 Chorismate mutase type II FY034_07010 PF02910 Fumarate reductase flavoprotein C-term FY034_07010 PF00890 FAD binding domain FY034_07015 PF01687 Riboflavin kinase FY034_07015 PF06574 FAD synthetase FY034_07030 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FY034_07030 PF08501 Shikimate dehydrogenase substrate binding domain FY034_07030 PF01488 Shikimate / quinate 5-dehydrogenase FY034_07035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_07035 PF00437 Type II/IV secretion system protein FY034_07040 PF00437 Type II/IV secretion system protein FY034_07045 PF00482 Type II secretion system (T2SS), protein F FY034_07050 PF00512 His Kinase A (phospho-acceptor) domain FY034_07050 PF00989 PAS fold FY034_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07055 PF00072 Response regulator receiver domain FY034_07055 PF00158 Sigma-54 interaction domain FY034_07055 PF02954 Bacterial regulatory protein, Fis family FY034_07060 PF16363 GDP-mannose 4,6 dehydratase FY034_07065 PF04321 RmlD substrate binding domain FY034_07070 PF00483 Nucleotidyl transferase FY034_07070 PF01050 Mannose-6-phosphate isomerase FY034_07075 PF01050 Mannose-6-phosphate isomerase FY034_07075 PF00483 Nucleotidyl transferase FY034_07080 PF00155 Aminotransferase class I and II FY034_07085 PF00561 alpha/beta hydrolase fold FY034_07090 PF08241 Methyltransferase domain FY034_07095 PF01022 Bacterial regulatory protein, arsR family FY034_07100 PF17384 RimP C-terminal SH3 domain FY034_07100 PF02576 RimP N-terminal domain FY034_07105 PF13184 NusA-like KH domain FY034_07105 PF08529 NusA N-terminal domain FY034_07105 PF00575 S1 RNA binding domain FY034_07115 PF00009 Elongation factor Tu GTP binding domain FY034_07115 PF11987 Translation-initiation factor 2 FY034_07115 PF04760 Translation initiation factor IF-2, N-terminal region FY034_07120 PF02033 Ribosome-binding factor A FY034_07125 PF02272 DHHA1 domain FY034_07125 PF01368 DHH family FY034_07130 PF16198 tRNA pseudouridylate synthase B C-terminal domain FY034_07130 PF01509 TruB family pseudouridylate synthase (N terminal domain) FY034_07135 PF00312 Ribosomal protein S15 FY034_07140 PF03725 3' exoribonuclease family, domain 2 FY034_07140 PF00575 S1 RNA binding domain FY034_07140 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FY034_07140 PF00013 KH domain FY034_07140 PF01138 3' exoribonuclease family, domain 1 FY034_07145 PF17810 Arginine decarboxylase helical bundle domain FY034_07145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FY034_07145 PF17944 Arginine decarboxylase C-terminal helical extension FY034_07150 PF03435 Saccharopine dehydrogenase NADP binding domain FY034_07150 PF16653 Saccharopine dehydrogenase C-terminal domain FY034_07155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FY034_07285 PF00574 Clp protease FY034_07325 PF00589 Phage integrase family FY034_07325 PF13495 Phage integrase, N-terminal SAM-like domain FY034_07425 PF00589 Phage integrase family FY034_07425 PF13495 Phage integrase, N-terminal SAM-like domain FY034_07440 PF01627 Hpt domain FY034_07440 PF00512 His Kinase A (phospho-acceptor) domain FY034_07440 PF00072 Response regulator receiver domain FY034_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07440 PF00672 HAMP domain FY034_07440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_07450 PF08546 Ketopantoate reductase PanE/ApbA C terminal FY034_07450 PF02558 Ketopantoate reductase PanE/ApbA FY034_07455 PF01925 Sulfite exporter TauE/SafE FY034_07460 PF00672 HAMP domain FY034_07460 PF00512 His Kinase A (phospho-acceptor) domain FY034_07460 PF00072 Response regulator receiver domain FY034_07460 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_07460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07460 PF01627 Hpt domain FY034_07465 PF00117 Glutamine amidotransferase class-I FY034_07465 PF06418 CTP synthase N-terminus FY034_07470 PF02348 Cytidylyltransferase FY034_07475 PF08668 HDOD domain FY034_07475 PF00563 EAL domain FY034_07480 PF01339 CheB methylesterase FY034_07480 PF00072 Response regulator receiver domain FY034_07485 PF01739 CheR methyltransferase, SAM binding domain FY034_07485 PF03705 CheR methyltransferase, all-alpha domain FY034_07490 PF01339 CheB methylesterase FY034_07490 PF00072 Response regulator receiver domain FY034_07495 PF01584 CheW-like domain FY034_07500 PF02203 Tar ligand binding domain homologue FY034_07500 PF00672 HAMP domain FY034_07500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_07505 PF16123 Hydroxyacylglutathione hydrolase C-terminus FY034_07505 PF00753 Metallo-beta-lactamase superfamily FY034_07510 PF01339 CheB methylesterase FY034_07510 PF01739 CheR methyltransferase, SAM binding domain FY034_07510 PF03705 CheR methyltransferase, all-alpha domain FY034_07510 PF08448 PAS fold FY034_07515 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07515 PF01627 Hpt domain FY034_07515 PF01584 CheW-like domain FY034_07520 PF00072 Response regulator receiver domain FY034_07535 PF00486 Transcriptional regulatory protein, C terminal FY034_07535 PF00072 Response regulator receiver domain FY034_07545 PF13188 PAS domain FY034_07545 PF08448 PAS fold FY034_07545 PF00072 Response regulator receiver domain FY034_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07545 PF00512 His Kinase A (phospho-acceptor) domain FY034_07550 PF00512 His Kinase A (phospho-acceptor) domain FY034_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_07555 PF00072 Response regulator receiver domain FY034_07555 PF00158 Sigma-54 interaction domain FY034_07555 PF02954 Bacterial regulatory protein, Fis family FY034_07560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FY034_07565 PF03477 ATP cone domain FY034_07570 PF01872 RibD C-terminal domain FY034_07570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FY034_07575 PF00677 Lumazine binding domain FY034_07580 PF00925 GTP cyclohydrolase II FY034_07580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FY034_07585 PF02677 Epoxyqueuosine reductase QueH FY034_07595 PF00871 Acetokinase family FY034_07605 PF02896 PEP-utilising enzyme, TIM barrel domain FY034_07605 PF00391 PEP-utilising enzyme, mobile domain FY034_07605 PF05524 PEP-utilising enzyme, N-terminal FY034_07620 PF03772 Competence protein FY034_07620 PF00753 Metallo-beta-lactamase superfamily FY034_07620 PF13567 Domain of unknown function (DUF4131) FY034_07625 PF00072 Response regulator receiver domain FY034_07625 PF00990 Diguanylate cyclase, GGDEF domain FY034_07630 PF03129 Anticodon binding domain FY034_07630 PF13393 Histidyl-tRNA synthetase FY034_07665 PF00155 Aminotransferase class I and II FY034_07670 PF01467 Cytidylyltransferase-like FY034_07680 PF01966 HD domain FY034_07690 PF04408 Helicase associated domain (HA2) FY034_07690 PF00271 Helicase conserved C-terminal domain FY034_07690 PF08482 ATP-dependent helicase C-terminal FY034_07690 PF00270 DEAD/DEAH box helicase FY034_07695 PF00999 Sodium/hydrogen exchanger family FY034_07695 PF02254 TrkA-N domain FY034_07700 PF00037 4Fe-4S binding domain FY034_07700 PF13247 4Fe-4S dicluster domain FY034_07750 PF02915 Rubrerythrin FY034_07755 PF00141 Peroxidase FY034_07765 PF02915 Rubrerythrin FY034_07785 PF12704 MacB-like periplasmic core domain FY034_07785 PF02687 FtsX-like permease family FY034_07790 PF12704 MacB-like periplasmic core domain FY034_07790 PF00005 ABC transporter FY034_07790 PF02687 FtsX-like permease family FY034_07795 PF03649 Uncharacterised protein family (UPF0014) FY034_07800 PF00005 ABC transporter FY034_07810 PF01614 Bacterial transcriptional regulator FY034_07810 PF09339 IclR helix-turn-helix domain FY034_07820 PF00474 Sodium:solute symporter family FY034_07825 PF00654 Voltage gated chloride channel FY034_07830 PF00128 Alpha amylase, catalytic domain FY034_07830 PF16657 Maltogenic Amylase, C-terminal domain FY034_07835 PF02446 4-alpha-glucanotransferase FY034_07840 PF00128 Alpha amylase, catalytic domain FY034_07850 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FY034_07850 PF00128 Alpha amylase, catalytic domain FY034_07865 PF04055 Radical SAM superfamily FY034_07865 PF12544 Lysine-2,3-aminomutase FY034_07895 PF03471 Transporter associated domain FY034_07895 PF00999 Sodium/hydrogen exchanger family FY034_07900 PF00990 Diguanylate cyclase, GGDEF domain FY034_07910 PF00982 Glycosyltransferase family 20 FY034_07925 PF01047 MarR family FY034_07930 PF01039 Carboxyl transferase domain FY034_07940 PF02436 Conserved carboxylase domain FY034_07940 PF00364 Biotin-requiring enzyme FY034_07940 PF00682 HMGL-like FY034_07945 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FY034_07950 PF00027 Cyclic nucleotide-binding domain FY034_07950 PF00520 Ion transport protein FY034_07955 PF03334 Na+/H+ antiporter subunit FY034_07960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FY034_07965 PF01899 Na+/H+ ion antiporter subunit FY034_07970 PF00361 Proton-conducting membrane transporter FY034_07975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FY034_07980 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FY034_07985 PF13244 Domain of unknown function (DUF4040) FY034_07985 PF00361 Proton-conducting membrane transporter FY034_07985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY034_07995 PF03600 Citrate transporter FY034_08010 PF03600 Citrate transporter FY034_08020 PF00474 Sodium:solute symporter family FY034_08035 PF00478 IMP dehydrogenase / GMP reductase domain FY034_08035 PF00571 CBS domain FY034_08040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FY034_08045 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FY034_08050 PF03480 Bacterial extracellular solute-binding protein, family 7 FY034_08055 PF07690 Major Facilitator Superfamily FY034_08060 PF00158 Sigma-54 interaction domain FY034_08060 PF00072 Response regulator receiver domain FY034_08060 PF02954 Bacterial regulatory protein, Fis family FY034_08065 PF00072 Response regulator receiver domain FY034_08070 PF00072 Response regulator receiver domain FY034_08070 PF13188 PAS domain FY034_08070 PF08448 PAS fold FY034_08070 PF00512 His Kinase A (phospho-acceptor) domain FY034_08070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08075 PF00512 His Kinase A (phospho-acceptor) domain FY034_08080 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FY034_08085 PF01584 CheW-like domain FY034_08090 PF00672 HAMP domain FY034_08090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_08095 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment FY034_08095 PF01297 Zinc-uptake complex component A periplasmic FY034_08100 PF00005 ABC transporter FY034_08105 PF00950 ABC 3 transport family FY034_08110 PF00072 Response regulator receiver domain FY034_08120 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FY034_08125 PF05193 Peptidase M16 inactive domain FY034_08125 PF00675 Insulinase (Peptidase family M16) FY034_08130 PF09308 LuxQ, periplasmic FY034_08130 PF00072 Response regulator receiver domain FY034_08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08130 PF00512 His Kinase A (phospho-acceptor) domain FY034_08135 PF00692 dUTPase FY034_08140 PF02073 Thermophilic metalloprotease (M29) FY034_08145 PF01300 Telomere recombination FY034_08150 PF00072 Response regulator receiver domain FY034_08150 PF00990 Diguanylate cyclase, GGDEF domain FY034_08155 PF01242 6-pyruvoyl tetrahydropterin synthase FY034_08160 PF04055 Radical SAM superfamily FY034_08165 PF02633 Creatinine amidohydrolase FY034_08175 PF05958 tRNA (Uracil-5-)-methyltransferase FY034_08175 PF01938 TRAM domain FY034_08180 PF00216 Bacterial DNA-binding protein FY034_08185 PF02541 Ppx/GppA phosphatase family FY034_08185 PF01761 3-dehydroquinate synthase FY034_08220 PF00501 AMP-binding enzyme FY034_08220 PF14535 AMP-binding enzyme C-terminal domain FY034_08230 PF13458 Periplasmic binding protein FY034_08240 PF02653 Branched-chain amino acid transport system / permease component FY034_08245 PF11862 Domain of unknown function (DUF3382) FY034_08245 PF02653 Branched-chain amino acid transport system / permease component FY034_08250 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY034_08250 PF00005 ABC transporter FY034_08255 PF00005 ABC transporter FY034_08270 PF03781 Sulfatase-modifying factor enzyme 1 FY034_08285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FY034_08290 PF00588 SpoU rRNA Methylase family FY034_08290 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY034_08295 PF05958 tRNA (Uracil-5-)-methyltransferase FY034_08305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY034_08305 PF02824 TGS domain FY034_08305 PF03129 Anticodon binding domain FY034_08305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY034_08310 PF00707 Translation initiation factor IF-3, C-terminal domain FY034_08310 PF05198 Translation initiation factor IF-3, N-terminal domain FY034_08315 PF01632 Ribosomal protein L35 FY034_08320 PF00453 Ribosomal protein L20 FY034_08325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FY034_08325 PF01409 tRNA synthetases class II core domain (F) FY034_08330 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FY034_08330 PF01588 Putative tRNA binding domain FY034_08330 PF03147 Ferredoxin-fold anticodon binding domain FY034_08330 PF03484 tRNA synthetase B5 domain FY034_08330 PF03483 B3/4 domain FY034_08345 PF08525 Opacity-associated protein A N-terminal motif FY034_08345 PF01476 LysM domain FY034_08345 PF01551 Peptidase family M23 FY034_08355 PF00543 Nitrogen regulatory protein P-II FY034_08360 PF03951 Glutamine synthetase, beta-Grasp domain FY034_08360 PF00120 Glutamine synthetase, catalytic domain FY034_08365 PF02163 Peptidase family M50 FY034_08370 PF00579 tRNA synthetases class I (W and Y) FY034_08375 PF02616 Segregation and condensation protein ScpA FY034_08380 PF04079 Segregation and condensation complex subunit ScpB FY034_08385 PF01875 Memo-like protein FY034_08395 PF06434 Aconitate hydratase 2 N-terminus FY034_08395 PF00330 Aconitase family (aconitate hydratase) FY034_08395 PF11791 Aconitate B N-terminal domain FY034_08400 PF00216 Bacterial DNA-binding protein FY034_08405 PF13411 MerR HTH family regulatory protein FY034_08415 PF00563 EAL domain FY034_08415 PF00990 Diguanylate cyclase, GGDEF domain FY034_08415 PF05231 MASE1 FY034_08415 PF08447 PAS fold FY034_08415 PF08448 PAS fold FY034_08415 PF13426 PAS domain FY034_08420 PF00512 His Kinase A (phospho-acceptor) domain FY034_08420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08425 PF00072 Response regulator receiver domain FY034_08425 PF08448 PAS fold FY034_08425 PF00512 His Kinase A (phospho-acceptor) domain FY034_08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08425 PF13188 PAS domain FY034_08430 PF00512 His Kinase A (phospho-acceptor) domain FY034_08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08435 PF00072 Response regulator receiver domain FY034_08435 PF13188 PAS domain FY034_08435 PF08448 PAS fold FY034_08435 PF00512 His Kinase A (phospho-acceptor) domain FY034_08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08440 PF00072 Response regulator receiver domain FY034_08440 PF02954 Bacterial regulatory protein, Fis family FY034_08440 PF00158 Sigma-54 interaction domain FY034_08445 PF00072 Response regulator receiver domain FY034_08450 PF02954 Bacterial regulatory protein, Fis family FY034_08450 PF00158 Sigma-54 interaction domain FY034_08450 PF00072 Response regulator receiver domain FY034_08455 PF00025 ADP-ribosylation factor family FY034_08460 PF00072 Response regulator receiver domain FY034_08460 PF13188 PAS domain FY034_08460 PF00512 His Kinase A (phospho-acceptor) domain FY034_08460 PF08448 PAS fold FY034_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08475 PF00512 His Kinase A (phospho-acceptor) domain FY034_08475 PF09308 LuxQ, periplasmic FY034_08475 PF00072 Response regulator receiver domain FY034_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08480 PF00512 His Kinase A (phospho-acceptor) domain FY034_08480 PF01627 Hpt domain FY034_08480 PF00072 Response regulator receiver domain FY034_08480 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_08485 PF00072 Response regulator receiver domain FY034_08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08490 PF00989 PAS fold FY034_08490 PF00512 His Kinase A (phospho-acceptor) domain FY034_08495 PF00072 Response regulator receiver domain FY034_08500 PF00512 His Kinase A (phospho-acceptor) domain FY034_08500 PF01627 Hpt domain FY034_08500 PF00072 Response regulator receiver domain FY034_08500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_08505 PF00437 Type II/IV secretion system protein FY034_08505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_08510 PF02954 Bacterial regulatory protein, Fis family FY034_08510 PF00072 Response regulator receiver domain FY034_08510 PF00158 Sigma-54 interaction domain FY034_08530 PF08448 PAS fold FY034_08530 PF08447 PAS fold FY034_08530 PF00563 EAL domain FY034_08530 PF00990 Diguanylate cyclase, GGDEF domain FY034_08530 PF13426 PAS domain FY034_08530 PF05231 MASE1 FY034_08535 PF00571 CBS domain FY034_08535 PF00478 IMP dehydrogenase / GMP reductase domain FY034_08540 PF02540 NAD synthase FY034_08540 PF00958 GMP synthase C terminal domain FY034_08540 PF00117 Glutamine amidotransferase class-I FY034_08545 PF01841 Transglutaminase-like superfamily FY034_08545 PF13559 Domain of unknown function (DUF4129) FY034_08545 PF11992 Domain of unknown function (DUF3488) FY034_08565 PF01226 Formate/nitrite transporter FY034_08570 PF04551 GcpE protein FY034_08580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY034_08580 PF03129 Anticodon binding domain FY034_08580 PF04073 Aminoacyl-tRNA editing domain FY034_08585 PF14535 AMP-binding enzyme C-terminal domain FY034_08585 PF00501 AMP-binding enzyme FY034_08595 PF01176 Translation initiation factor 1A / IF-1 FY034_08600 PF01132 Elongation factor P (EF-P) OB domain FY034_08600 PF08207 Elongation factor P (EF-P) KOW-like domain FY034_08600 PF09285 Elongation factor P, C-terminal FY034_08605 PF00152 tRNA synthetases class II (D, K and N) FY034_08610 PF02601 Exonuclease VII, large subunit FY034_08610 PF13742 OB-fold nucleic acid binding domain FY034_08615 PF13614 AAA domain FY034_08620 PF01272 Transcription elongation factor, GreA/GreB, C-term FY034_08620 PF03449 Transcription elongation factor, N-terminal FY034_08625 PF00216 Bacterial DNA-binding protein FY034_08630 PF04748 Divergent polysaccharide deacetylase FY034_08635 PF03572 Peptidase family S41 FY034_08635 PF13180 PDZ domain FY034_08640 PF01551 Peptidase family M23 FY034_08640 PF01476 LysM domain FY034_08645 PF18075 FtsX extracellular domain FY034_08645 PF02687 FtsX-like permease family FY034_08650 PF00005 ABC transporter FY034_08655 PF00535 Glycosyl transferase family 2 FY034_08675 PF00216 Bacterial DNA-binding protein FY034_08680 PF06689 ClpX C4-type zinc finger FY034_08680 PF10431 C-terminal, D2-small domain, of ClpB protein FY034_08680 PF07724 AAA domain (Cdc48 subfamily) FY034_08685 PF00574 Clp protease FY034_08690 PF05697 Bacterial trigger factor protein (TF) FY034_08690 PF05698 Bacterial trigger factor protein (TF) C-terminus FY034_08690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_08700 PF13361 UvrD-like helicase C-terminal domain FY034_08700 PF00580 UvrD/REP helicase N-terminal domain FY034_08705 PF00293 NUDIX domain FY034_08710 PF00464 Serine hydroxymethyltransferase FY034_08715 PF02502 Ribose/Galactose Isomerase FY034_08720 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_08720 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_08725 PF00550 Phosphopantetheine attachment site FY034_08735 PF07977 FabA-like domain FY034_08740 PF00698 Acyl transferase domain FY034_08745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY034_08745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY034_08750 PF02504 Fatty acid synthesis protein FY034_08755 PF01783 Ribosomal L32p protein family FY034_08765 PF05343 M42 glutamyl aminopeptidase FY034_08770 PF04055 Radical SAM superfamily FY034_08770 PF01938 TRAM domain FY034_08770 PF00919 Uncharacterized protein family UPF0004 FY034_08775 PF14622 Ribonuclease-III-like FY034_08775 PF00035 Double-stranded RNA binding motif FY034_08780 PF02223 Thymidylate kinase FY034_08785 PF09115 DNA polymerase III, delta subunit, C terminal FY034_08790 PF04468 PSP1 C-terminal conserved region FY034_08795 PF09334 tRNA synthetases class I (M) FY034_08795 PF08264 Anticodon-binding domain of tRNA FY034_08795 PF01588 Putative tRNA binding domain FY034_08805 PF06865 Pyrimidine/purine nucleoside phosphorylase FY034_08820 PF00270 DEAD/DEAH box helicase FY034_08820 PF00271 Helicase conserved C-terminal domain FY034_08820 PF17191 RecG wedge domain FY034_08845 PF06463 Molybdenum Cofactor Synthesis C FY034_08845 PF04055 Radical SAM superfamily FY034_08855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY034_08855 PF00205 Thiamine pyrophosphate enzyme, central domain FY034_08855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY034_08865 PF01370 NAD dependent epimerase/dehydratase family FY034_08870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_08875 PF16363 GDP-mannose 4,6 dehydratase FY034_08880 PF00483 Nucleotidyl transferase FY034_08885 PF14524 Wzt C-terminal domain FY034_08885 PF00005 ABC transporter FY034_08900 PF01040 UbiA prenyltransferase family FY034_08910 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FY034_08915 PF02405 Permease MlaE FY034_08920 PF12706 Beta-lactamase superfamily domain FY034_08930 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FY034_08930 PF06827 Zinc finger found in FPG and IleRS FY034_08930 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FY034_08935 PF00211 Adenylate and Guanylate cyclase catalytic domain FY034_08945 PF00437 Type II/IV secretion system protein FY034_08945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_08970 PF12762 ISXO2-like transposase domain FY034_08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_08975 PF03466 LysR substrate binding domain FY034_08995 PF01625 Peptide methionine sulfoxide reductase FY034_09000 PF01641 SelR domain FY034_09005 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_09005 PF00403 Heavy-metal-associated domain FY034_09005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY034_09015 PF09335 SNARE associated Golgi protein FY034_09020 PF13847 Methyltransferase domain FY034_09025 PF00990 Diguanylate cyclase, GGDEF domain FY034_09025 PF00072 Response regulator receiver domain FY034_09030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_09030 PF00072 Response regulator receiver domain FY034_09030 PF00512 His Kinase A (phospho-acceptor) domain FY034_09030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_09030 PF00672 HAMP domain FY034_09030 PF01627 Hpt domain FY034_09055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY034_09060 PF01047 MarR family FY034_09065 PF04264 YceI-like domain FY034_09070 PF03358 NADPH-dependent FMN reductase FY034_09075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FY034_09080 PF08439 Oligopeptidase F FY034_09080 PF01432 Peptidase family M3 FY034_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_09085 PF13426 PAS domain FY034_09085 PF08447 PAS fold FY034_09090 PF00484 Carbonic anhydrase FY034_09095 PF10431 C-terminal, D2-small domain, of ClpB protein FY034_09095 PF02861 Clp amino terminal domain, pathogenicity island component FY034_09095 PF17871 AAA lid domain FY034_09095 PF07724 AAA domain (Cdc48 subfamily) FY034_09095 PF00004 ATPase family associated with various cellular activities (AAA) FY034_09125 PF00072 Response regulator receiver domain FY034_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_09125 PF01627 Hpt domain FY034_09125 PF00512 His Kinase A (phospho-acceptor) domain FY034_09130 PF01545 Cation efflux family FY034_09130 PF16916 Dimerisation domain of Zinc Transporter FY034_09135 PF01368 DHH family FY034_09135 PF02272 DHHA1 domain FY034_09135 PF17768 RecJ OB domain FY034_09135 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FY034_09145 PF02355 Protein export membrane protein FY034_09145 PF07549 SecD/SecF GG Motif FY034_09150 PF07549 SecD/SecF GG Motif FY034_09150 PF02355 Protein export membrane protein FY034_09155 PF02699 Preprotein translocase subunit FY034_09160 PF01702 Queuine tRNA-ribosyltransferase FY034_09165 PF02547 Queuosine biosynthesis protein FY034_09170 PF08486 Stage II sporulation protein FY034_09175 PF00005 ABC transporter FY034_09175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY034_09180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FY034_09180 PF00005 ABC transporter FY034_09190 PF01702 Queuine tRNA-ribosyltransferase FY034_09200 PF00113 Enolase, C-terminal TIM barrel domain FY034_09200 PF03952 Enolase, N-terminal domain FY034_09205 PF00342 Phosphoglucose isomerase FY034_09210 PF00005 ABC transporter FY034_09215 PF00528 Binding-protein-dependent transport system inner membrane component FY034_09220 PF00672 HAMP domain FY034_09220 PF07228 Stage II sporulation protein E (SpoIIE) FY034_09230 PF01180 Dihydroorotate dehydrogenase FY034_09260 PF00528 Binding-protein-dependent transport system inner membrane component FY034_09260 PF12911 N-terminal TM domain of oligopeptide transport permease C FY034_09265 PF00528 Binding-protein-dependent transport system inner membrane component FY034_09270 PF01725 Ham1 family FY034_09275 PF03725 3' exoribonuclease family, domain 2 FY034_09275 PF01138 3' exoribonuclease family, domain 1 FY034_09285 PF00682 HMGL-like FY034_09285 PF08502 LeuA allosteric (dimerisation) domain FY034_09290 PF11871 Domain of unknown function (DUF3391) FY034_09290 PF01966 HD domain FY034_09300 PF02446 4-alpha-glucanotransferase FY034_09305 PF11992 Domain of unknown function (DUF3488) FY034_09305 PF13559 Domain of unknown function (DUF4129) FY034_09305 PF01841 Transglutaminase-like superfamily FY034_09315 PF07726 ATPase family associated with various cellular activities (AAA) FY034_09315 PF17863 AAA lid domain FY034_09325 PF00072 Response regulator receiver domain FY034_09330 PF03819 MazG nucleotide pyrophosphohydrolase domain FY034_09335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FY034_09335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FY034_09340 PF03023 Lipid II flippase MurJ FY034_09355 PF17151 Periplasmic sensor domain FY034_09355 PF00990 Diguanylate cyclase, GGDEF domain FY034_09360 PF02646 RmuC family FY034_09365 PF01750 Hydrogenase maturation protease FY034_09370 PF01292 Prokaryotic cytochrome b561 FY034_09375 PF00374 Nickel-dependent hydrogenase FY034_09380 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal FY034_09380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_09425 PF02954 Bacterial regulatory protein, Fis family FY034_09425 PF00989 PAS fold FY034_09425 PF00158 Sigma-54 interaction domain FY034_09440 PF13089 Polyphosphate kinase N-terminal domain FY034_09440 PF02503 Polyphosphate kinase middle domain FY034_09440 PF17941 Polyphosphate kinase C-terminal domain 1 FY034_09440 PF13090 Polyphosphate kinase C-terminal domain 2 FY034_09445 PF13361 UvrD-like helicase C-terminal domain FY034_09445 PF00580 UvrD/REP helicase N-terminal domain FY034_09455 PF01272 Transcription elongation factor, GreA/GreB, C-term FY034_09455 PF03449 Transcription elongation factor, N-terminal FY034_09460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY034_09460 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FY034_09460 PF02142 MGS-like domain FY034_09480 PF00117 Glutamine amidotransferase class-I FY034_09480 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FY034_09485 PF01979 Amidohydrolase family FY034_09490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY034_09490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY034_09495 PF00156 Phosphoribosyl transferase domain FY034_09500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY034_09500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY034_09500 PF01842 ACT domain FY034_09505 PF00588 SpoU rRNA Methylase family FY034_09510 PF00005 ABC transporter FY034_09540 PF14245 Type IV pilin PilA FY034_09540 PF07963 Prokaryotic N-terminal methylation motif FY034_09545 PF00114 Pilin (bacterial filament) FY034_09545 PF07963 Prokaryotic N-terminal methylation motif FY034_09550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FY034_09565 PF07228 Stage II sporulation protein E (SpoIIE) FY034_09565 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain FY034_09570 PF01740 STAS domain FY034_09580 PF04055 Radical SAM superfamily FY034_09580 PF12544 Lysine-2,3-aminomutase FY034_09585 PF01066 CDP-alcohol phosphatidyltransferase FY034_09590 PF01464 Transglycosylase SLT domain FY034_09595 PF02769 AIR synthase related protein, C-terminal domain FY034_09595 PF00586 AIR synthase related protein, N-terminal domain FY034_09600 PF00551 Formyl transferase FY034_09605 PF01649 Ribosomal protein S20 FY034_09620 PF00990 Diguanylate cyclase, GGDEF domain FY034_09625 PF09345 Domain of unknown function (DUF1987) FY034_09645 PF08264 Anticodon-binding domain of tRNA FY034_09645 PF00133 tRNA synthetases class I (I, L, M and V) FY034_09645 PF13603 Leucyl-tRNA synthetase, Domain 2 FY034_09650 PF01339 CheB methylesterase FY034_09650 PF00072 Response regulator receiver domain FY034_09655 PF01739 CheR methyltransferase, SAM binding domain FY034_09655 PF03705 CheR methyltransferase, all-alpha domain FY034_09665 PF01584 CheW-like domain FY034_09670 PF01584 CheW-like domain FY034_09675 PF13401 AAA domain FY034_09675 PF01471 Putative peptidoglycan binding domain FY034_09680 PF01584 CheW-like domain FY034_09680 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_09680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_09680 PF01627 Hpt domain FY034_09680 PF07194 P2 response regulator binding domain FY034_09685 PF00072 Response regulator receiver domain FY034_09695 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FY034_09695 PF01926 50S ribosome-binding GTPase FY034_09700 PF01926 50S ribosome-binding GTPase FY034_09700 PF07650 KH domain FY034_09705 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FY034_09705 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY034_09710 PF00919 Uncharacterized protein family UPF0004 FY034_09710 PF01938 TRAM domain FY034_09710 PF04055 Radical SAM superfamily FY034_09715 PF02219 Methylenetetrahydrofolate reductase FY034_09720 PF02607 B12 binding domain FY034_09720 PF02310 B12 binding domain FY034_09720 PF02965 Vitamin B12 dependent methionine synthase, activation domain FY034_09720 PF00809 Pterin binding enzyme FY034_09720 PF02574 Homocysteine S-methyltransferase FY034_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_09725 PF00183 Hsp90 protein FY034_09735 PF00575 S1 RNA binding domain FY034_09740 PF02401 LytB protein FY034_09745 PF02224 Cytidylate kinase FY034_09750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FY034_09755 PF02153 Prephenate dehydrogenase FY034_09760 PF00800 Prephenate dehydratase FY034_09760 PF01817 Chorismate mutase type II FY034_09760 PF01842 ACT domain FY034_09770 PF07953 Clostridium neurotoxin, N-terminal receptor binding FY034_09770 PF01742 Clostridial neurotoxin zinc protease FY034_09770 PF08470 Nontoxic nonhaemagglutinin C-terminal FY034_09785 PF05567 Neisseria PilC beta-propeller domain FY034_09800 PF02954 Bacterial regulatory protein, Fis family FY034_09800 PF00158 Sigma-54 interaction domain FY034_09800 PF00072 Response regulator receiver domain FY034_09805 PF00989 PAS fold FY034_09805 PF00512 His Kinase A (phospho-acceptor) domain FY034_09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_09810 PF01478 Type IV leader peptidase family FY034_09810 PF06750 Bacterial Peptidase A24 N-terminal domain FY034_09815 PF00381 PTS HPr component phosphorylation site FY034_09820 PF03610 PTS system fructose IIA component FY034_09825 PF03668 P-loop ATPase protein family FY034_09830 PF02603 HPr Serine kinase N terminus FY034_09830 PF07475 HPr Serine kinase C-terminal domain FY034_09835 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus FY034_09835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FY034_09840 PF04552 Sigma-54, DNA binding domain FY034_09840 PF00309 Sigma-54 factor, Activator interacting domain (AID) FY034_09840 PF04963 Sigma-54 factor, core binding domain FY034_09845 PF12399 Branched-chain amino acid ATP-binding cassette transporter FY034_09845 PF00005 ABC transporter FY034_09865 PF00571 CBS domain FY034_09865 PF01380 SIS domain FY034_09870 PF00793 DAHP synthetase I family FY034_09875 PF17864 RuvB AAA lid domain FY034_09875 PF05491 RuvB C-terminal winged helix domain FY034_09875 PF05496 Holliday junction DNA helicase RuvB P-loop domain FY034_09880 PF00308 Bacterial dnaA protein FY034_09880 PF08299 Bacterial dnaA protein helix-turn-helix FY034_09880 PF11638 DnaA N-terminal domain FY034_09890 PF01420 Type I restriction modification DNA specificity domain FY034_09895 PF13784 Fic/DOC family N-terminal FY034_09895 PF02661 Fic/DOC family FY034_09900 PF12161 HsdM N-terminal domain FY034_09900 PF02384 N-6 DNA Methylase FY034_09905 PF04851 Type III restriction enzyme, res subunit FY034_09905 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) FY034_09905 PF00271 Helicase conserved C-terminal domain FY034_09905 PF08463 EcoEI R protein C-terminal FY034_09920 PF02780 Transketolase, C-terminal domain FY034_09920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FY034_09920 PF02779 Transketolase, pyrimidine binding domain FY034_09925 PF00348 Polyprenyl synthetase FY034_09930 PF02609 Exonuclease VII small subunit FY034_09935 PF04055 Radical SAM superfamily FY034_09935 PF02310 B12 binding domain FY034_09965 PF07977 FabA-like domain FY034_09970 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_09970 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_09975 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_09975 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_09985 PF02310 B12 binding domain FY034_09985 PF04055 Radical SAM superfamily FY034_10005 PF04055 Radical SAM superfamily FY034_10010 PF04055 Radical SAM superfamily FY034_10010 PF02310 B12 binding domain FY034_10015 PF00550 Phosphopantetheine attachment site FY034_10020 PF03279 Bacterial lipid A biosynthesis acyltransferase FY034_10030 PF00535 Glycosyl transferase family 2 FY034_10035 PF01522 Polysaccharide deacetylase FY034_10050 PF00890 FAD binding domain FY034_10050 PF02910 Fumarate reductase flavoprotein C-term FY034_10065 PF00216 Bacterial DNA-binding protein FY034_10070 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_10075 PF13419 Haloacid dehalogenase-like hydrolase FY034_10090 PF00210 Ferritin-like domain FY034_10100 PF01938 TRAM domain FY034_10100 PF00919 Uncharacterized protein family UPF0004 FY034_10100 PF04055 Radical SAM superfamily FY034_10105 PF01584 CheW-like domain FY034_10105 PF00072 Response regulator receiver domain FY034_10120 PF02540 NAD synthase FY034_10125 PF02540 NAD synthase FY034_10125 PF00795 Carbon-nitrogen hydrolase FY034_10130 PF02021 Uncharacterised protein family UPF0102 FY034_10140 PF01985 CRS1 / YhbY (CRM) domain FY034_10145 PF13249 Squalene-hopene cyclase N-terminal domain FY034_10145 PF13243 Squalene-hopene cyclase C-terminal domain FY034_10150 PF01370 NAD dependent epimerase/dehydratase family FY034_10155 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FY034_10155 PF02779 Transketolase, pyrimidine binding domain FY034_10155 PF02780 Transketolase, C-terminal domain FY034_10160 PF04055 Radical SAM superfamily FY034_10160 PF13186 Iron-sulfur cluster-binding domain FY034_10170 PF01026 TatD related DNase FY034_10185 PF03738 Glutathionylspermidine synthase preATP-grasp FY034_10200 PF03061 Thioesterase superfamily FY034_10205 PF00158 Sigma-54 interaction domain FY034_10205 PF02954 Bacterial regulatory protein, Fis family FY034_10205 PF00072 Response regulator receiver domain FY034_10215 PF00202 Aminotransferase class-III FY034_10230 PF13495 Phage integrase, N-terminal SAM-like domain FY034_10230 PF00589 Phage integrase family FY034_10265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_10265 PF00512 His Kinase A (phospho-acceptor) domain FY034_10265 PF09456 RcsC Alpha-Beta-Loop (ABL) FY034_10265 PF00072 Response regulator receiver domain FY034_10270 PF01910 Thiamine-binding protein FY034_10280 PF00698 Acyl transferase domain FY034_10280 PF03060 Nitronate monooxygenase FY034_10285 PF00107 Zinc-binding dehydrogenase FY034_10285 PF08240 Alcohol dehydrogenase GroES-like domain FY034_10285 PF16197 Ketoacyl-synthetase C-terminal extension FY034_10285 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_10285 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_10285 PF08659 KR domain FY034_10285 PF00550 Phosphopantetheine attachment site FY034_10285 PF14765 Polyketide synthase dehydratase FY034_10285 PF00698 Acyl transferase domain FY034_10290 PF16197 Ketoacyl-synthetase C-terminal extension FY034_10290 PF00109 Beta-ketoacyl synthase, N-terminal domain FY034_10290 PF14765 Polyketide synthase dehydratase FY034_10290 PF08659 KR domain FY034_10290 PF02801 Beta-ketoacyl synthase, C-terminal domain FY034_10290 PF00668 Condensation domain FY034_10290 PF00501 AMP-binding enzyme FY034_10290 PF13193 AMP-binding enzyme C-terminal domain FY034_10290 PF00550 Phosphopantetheine attachment site FY034_10295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY034_10295 PF00108 Thiolase, N-terminal domain FY034_10300 PF00561 alpha/beta hydrolase fold FY034_10305 PF00501 AMP-binding enzyme FY034_10310 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family FY034_10315 PF01790 Prolipoprotein diacylglyceryl transferase FY034_10325 PF02683 Cytochrome C biogenesis protein transmembrane region FY034_10330 PF00578 AhpC/TSA family FY034_10335 PF00348 Polyprenyl synthetase FY034_10340 PF12300 ATP-dependent RNA helicase RhlB FY034_10340 PF00271 Helicase conserved C-terminal domain FY034_10340 PF00270 DEAD/DEAH box helicase FY034_10350 PF00291 Pyridoxal-phosphate dependent enzyme FY034_10350 PF14821 Threonine synthase N terminus FY034_10360 PF00830 Ribosomal L28 family FY034_10365 PF01042 Endoribonuclease L-PSP FY034_10370 PF13291 ACT domain FY034_10370 PF04607 Region found in RelA / SpoT proteins FY034_10370 PF02824 TGS domain FY034_10375 PF01192 RNA polymerase Rpb6 FY034_10380 PF00625 Guanylate kinase FY034_10385 PF03755 YicC-like family, N-terminal region FY034_10385 PF08340 Domain of unknown function (DUF1732) FY034_10390 PF00512 His Kinase A (phospho-acceptor) domain FY034_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_10390 PF08448 PAS fold FY034_10390 PF13188 PAS domain FY034_10390 PF00072 Response regulator receiver domain FY034_10395 PF02954 Bacterial regulatory protein, Fis family FY034_10395 PF00072 Response regulator receiver domain FY034_10395 PF00158 Sigma-54 interaction domain FY034_10420 PF14537 Cytochrome c3 FY034_10435 PF01850 PIN domain FY034_10445 PF13401 AAA domain FY034_10445 PF01471 Putative peptidoglycan binding domain FY034_10460 PF00027 Cyclic nucleotide-binding domain FY034_10460 PF07885 Ion channel FY034_10465 PF01180 Dihydroorotate dehydrogenase FY034_10470 PF00970 Oxidoreductase FAD-binding domain FY034_10470 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FY034_10470 PF00175 Oxidoreductase NAD-binding domain FY034_10475 PF00583 Acetyltransferase (GNAT) family FY034_10480 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_10480 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FY034_10500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FY034_10500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FY034_10500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FY034_10515 PF00398 Ribosomal RNA adenine dimethylase FY034_10520 PF00814 Glycoprotease family FY034_10525 PF02562 PhoH-like protein FY034_10525 PF13638 PIN domain FY034_10530 PF00266 Aminotransferase class-V FY034_10540 PF02867 Ribonucleotide reductase, barrel domain FY034_10540 PF00317 Ribonucleotide reductase, all-alpha domain FY034_10540 PF03477 ATP cone domain FY034_10550 PF00535 Glycosyl transferase family 2 FY034_10555 PF00535 Glycosyl transferase family 2 FY034_10575 PF05698 Bacterial trigger factor protein (TF) C-terminus FY034_10575 PF05697 Bacterial trigger factor protein (TF) FY034_10585 PF01694 Rhomboid family FY034_10595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY034_10595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY034_10600 PF00216 Bacterial DNA-binding protein FY034_10615 PF01743 Poly A polymerase head domain FY034_10615 PF01966 HD domain FY034_10615 PF12627 Probable RNA and SrmB- binding site of polymerase A FY034_10625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_10630 PF01230 HIT domain FY034_10650 PF01027 Inhibitor of apoptosis-promoting Bax1 FY034_10660 PF12843 Putative quorum-sensing-regulated virulence factor FY034_10670 PF06968 Biotin and Thiamin Synthesis associated domain FY034_10670 PF04055 Radical SAM superfamily FY034_10680 PF00437 Type II/IV secretion system protein FY034_10680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_10690 PF00873 AcrB/AcrD/AcrF family FY034_10695 PF02872 5'-nucleotidase, C-terminal domain FY034_10695 PF00149 Calcineurin-like phosphoesterase FY034_10715 PF14437 MafB19-like deaminase FY034_10720 PF00561 alpha/beta hydrolase fold FY034_10725 PF01773 Na+ dependent nucleoside transporter N-terminus FY034_10725 PF07670 Nucleoside recognition FY034_10725 PF07662 Na+ dependent nucleoside transporter C-terminus FY034_10735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY034_10735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY034_10750 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_10755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY034_10755 PF00205 Thiamine pyrophosphate enzyme, central domain FY034_10755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY034_10760 PF07690 Major Facilitator Superfamily FY034_10765 PF02558 Ketopantoate reductase PanE/ApbA FY034_10765 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain FY034_10770 PF00072 Response regulator receiver domain FY034_10770 PF00672 HAMP domain FY034_10770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_10770 PF00512 His Kinase A (phospho-acceptor) domain FY034_10770 PF01627 Hpt domain FY034_10770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_10790 PF00501 AMP-binding enzyme FY034_10790 PF13193 AMP-binding enzyme C-terminal domain FY034_10795 PF01869 BadF/BadG/BcrA/BcrD ATPase family FY034_10800 PF01869 BadF/BadG/BcrA/BcrD ATPase family FY034_10805 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component FY034_10830 PF00155 Aminotransferase class I and II FY034_10840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FY034_10840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FY034_10845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY034_10845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY034_10855 PF12804 MobA-like NTP transferase domain FY034_10860 PF02625 XdhC and CoxI family FY034_10860 PF13478 XdhC Rossmann domain FY034_10880 PF01799 [2Fe-2S] binding domain FY034_10880 PF00111 2Fe-2S iron-sulfur cluster binding domain FY034_10885 PF00550 Phosphopantetheine attachment site FY034_10895 PF00550 Phosphopantetheine attachment site FY034_10900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FY034_10900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FY034_10905 PF00550 Phosphopantetheine attachment site FY034_10920 PF00158 Sigma-54 interaction domain FY034_10920 PF00072 Response regulator receiver domain FY034_10920 PF02954 Bacterial regulatory protein, Fis family FY034_10925 PF08448 PAS fold FY034_10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_10925 PF08447 PAS fold FY034_10945 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FY034_10945 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FY034_10950 PF00486 Transcriptional regulatory protein, C terminal FY034_10950 PF00072 Response regulator receiver domain FY034_10955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_10955 PF00512 His Kinase A (phospho-acceptor) domain FY034_10980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_10990 PF00005 ABC transporter FY034_10990 PF12848 ABC transporter FY034_10995 PF00990 Diguanylate cyclase, GGDEF domain FY034_10995 PF00072 Response regulator receiver domain FY034_11030 PF02881 SRP54-type protein, helical bundle domain FY034_11030 PF02978 Signal peptide binding domain FY034_11030 PF00448 SRP54-type protein, GTPase domain FY034_11035 PF00886 Ribosomal protein S16 FY034_11045 PF05239 PRC-barrel domain FY034_11045 PF01782 RimM N-terminal domain FY034_11050 PF01746 tRNA (Guanine-1)-methyltransferase FY034_11055 PF09936 SAM-dependent RNA methyltransferase FY034_11060 PF01245 Ribosomal protein L19 FY034_11065 PF01351 Ribonuclease HII FY034_11070 PF00437 Type II/IV secretion system protein FY034_11070 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_11080 PF02618 YceG-like family FY034_11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_11085 PF08447 PAS fold FY034_11085 PF08448 PAS fold FY034_11090 PF00563 EAL domain FY034_11090 PF00990 Diguanylate cyclase, GGDEF domain FY034_11090 PF03707 Bacterial signalling protein N terminal repeat FY034_11095 PF00293 NUDIX domain FY034_11095 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain FY034_11095 PF09297 NADH pyrophosphatase zinc ribbon domain FY034_11100 PF00990 Diguanylate cyclase, GGDEF domain FY034_11100 PF08448 PAS fold FY034_11105 PF01676 Metalloenzyme superfamily FY034_11105 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase FY034_11110 PF01325 Iron dependent repressor, N-terminal DNA binding domain FY034_11110 PF18357 Diphteria toxin repressor SH3 domain FY034_11110 PF02742 Iron dependent repressor, metal binding and dimerisation domain FY034_11120 PF07670 Nucleoside recognition FY034_11120 PF17910 FeoB cytosolic helical domain FY034_11120 PF07664 Ferrous iron transport protein B C terminus FY034_11120 PF02421 Ferrous iron transport protein B FY034_11125 PF01475 Ferric uptake regulator family FY034_11135 PF00781 Diacylglycerol kinase catalytic domain FY034_11140 PF00218 Indole-3-glycerol phosphate synthase FY034_11145 PF00591 Glycosyl transferase family, a/b domain FY034_11145 PF02885 Glycosyl transferase family, helical bundle domain FY034_11150 PF00486 Transcriptional regulatory protein, C terminal FY034_11150 PF00072 Response regulator receiver domain FY034_11155 PF00144 Beta-lactamase FY034_11165 PF01960 ArgJ family FY034_11170 PF02810 SEC-C motif FY034_11170 PF07517 SecA DEAD-like domain FY034_11170 PF01043 SecA preprotein cross-linking domain FY034_11170 PF07516 SecA Wing and Scaffold domain FY034_11175 PF01098 Cell cycle protein FY034_11180 PF00905 Penicillin binding protein transpeptidase domain FY034_11180 PF03717 Penicillin-binding Protein dimerisation domain FY034_11190 PF04085 rod shape-determining protein MreC FY034_11195 PF08645 Polynucleotide kinase 3 phosphatase FY034_11200 PF00793 DAHP synthetase I family FY034_11205 PF01343 Peptidase family S49 FY034_11215 PF01066 CDP-alcohol phosphatidyltransferase FY034_11220 PF02666 Phosphatidylserine decarboxylase FY034_11225 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FY034_11225 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FY034_11230 PF10369 Small subunit of acetolactate synthase FY034_11235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY034_11235 PF00205 Thiamine pyrophosphate enzyme, central domain FY034_11235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY034_11245 PF00920 Dehydratase family FY034_11250 PF12849 PBP superfamily domain FY034_11255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_11260 PF00343 Carbohydrate phosphorylase FY034_11265 PF00004 ATPase family associated with various cellular activities (AAA) FY034_11265 PF16193 AAA C-terminal domain FY034_11265 PF12002 MgsA AAA+ ATPase C terminal FY034_11290 PF00365 Phosphofructokinase FY034_11300 PF01569 PAP2 superfamily FY034_11315 PF01797 Transposase IS200 like FY034_11340 PF00365 Phosphofructokinase FY034_11345 PF01544 CorA-like Mg2+ transporter protein FY034_11350 PF11734 TilS substrate C-terminal domain FY034_11350 PF01171 PP-loop family FY034_11355 PF00004 ATPase family associated with various cellular activities (AAA) FY034_11355 PF17862 AAA+ lid domain FY034_11355 PF06480 FtsH Extracellular FY034_11355 PF01434 Peptidase family M41 FY034_11360 PF00809 Pterin binding enzyme FY034_11365 PF02457 DisA bacterial checkpoint controller nucleotide-binding FY034_11370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY034_11370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY034_11370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY034_11370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY034_11375 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FY034_11380 PF01648 4'-phosphopantetheinyl transferase superfamily FY034_11385 PF01256 Carbohydrate kinase FY034_11385 PF03853 YjeF-related protein N-terminus FY034_11395 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FY034_11400 PF00696 Amino acid kinase family FY034_11400 PF01842 ACT domain FY034_11400 PF13840 ACT domain FY034_11405 PF00672 HAMP domain FY034_11405 PF00512 His Kinase A (phospho-acceptor) domain FY034_11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_11405 PF00072 Response regulator receiver domain FY034_11405 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_11405 PF01627 Hpt domain FY034_11440 PF00133 tRNA synthetases class I (I, L, M and V) FY034_11440 PF10458 Valyl tRNA synthetase tRNA binding arm FY034_11440 PF08264 Anticodon-binding domain of tRNA FY034_11460 PF01266 FAD dependent oxidoreductase FY034_11465 PF00117 Glutamine amidotransferase class-I FY034_11470 PF16921 Tex protein YqgF-like domain FY034_11470 PF17674 HHH domain FY034_11470 PF00575 S1 RNA binding domain FY034_11470 PF09371 Tex-like protein N-terminal domain FY034_11480 PF05698 Bacterial trigger factor protein (TF) C-terminus FY034_11485 PF04715 Anthranilate synthase component I, N terminal region FY034_11485 PF00425 chorismate binding enzyme FY034_11490 PF01584 CheW-like domain FY034_11490 PF00072 Response regulator receiver domain FY034_11495 PF02785 Biotin carboxylase C-terminal domain FY034_11495 PF00289 Biotin carboxylase, N-terminal domain FY034_11495 PF02436 Conserved carboxylase domain FY034_11495 PF00364 Biotin-requiring enzyme FY034_11495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY034_11495 PF00682 HMGL-like FY034_11515 PF00270 DEAD/DEAH box helicase FY034_11515 PF00271 Helicase conserved C-terminal domain FY034_11520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_11530 PF00361 Proton-conducting membrane transporter FY034_11530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY034_11545 PF00361 Proton-conducting membrane transporter FY034_11550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FY034_11555 PF00361 Proton-conducting membrane transporter FY034_11565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FY034_11565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FY034_11570 PF00689 Cation transporting ATPase, C-terminus FY034_11570 PF00690 Cation transporter/ATPase, N-terminus FY034_11620 PF03739 Lipopolysaccharide export system permease LptF/LptG FY034_11625 PF08447 PAS fold FY034_11625 PF08448 PAS fold FY034_11625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_11630 PF06397 Desulfoferrodoxin, N-terminal domain FY034_11630 PF01880 Desulfoferrodoxin FY034_11635 PF01926 50S ribosome-binding GTPase FY034_11635 PF06071 Protein of unknown function (DUF933) FY034_11640 PF01195 Peptidyl-tRNA hydrolase FY034_11645 PF01386 Ribosomal L25p family FY034_11645 PF14693 Ribosomal protein TL5, C-terminal domain FY034_11650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FY034_11650 PF14572 Phosphoribosyl synthetase-associated domain FY034_11655 PF08544 GHMP kinases C terminal FY034_11655 PF00288 GHMP kinases N terminal domain FY034_11660 PF04371 Porphyromonas-type peptidyl-arginine deiminase FY034_11665 PF00795 Carbon-nitrogen hydrolase FY034_11675 PF00155 Aminotransferase class I and II FY034_11685 PF02001 Protein of unknown function DUF134 FY034_11700 PF01592 NifU-like N terminal domain FY034_11710 PF01250 Ribosomal protein S6 FY034_11715 PF01084 Ribosomal protein S18 FY034_11725 PF03948 Ribosomal protein L9, C-terminal domain FY034_11725 PF01281 Ribosomal protein L9, N-terminal domain FY034_11730 PF03471 Transporter associated domain FY034_11730 PF00571 CBS domain FY034_11730 PF01595 Cyclin M transmembrane N-terminal domain FY034_11740 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FY034_11745 PF06426 Serine acetyltransferase, N-terminal FY034_11745 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_11750 PF05681 Fumarate hydratase (Fumerase) FY034_11750 PF05683 Fumarase C-terminus FY034_11770 PF00005 ABC transporter FY034_11770 PF16326 ABC transporter C-terminal domain FY034_11770 PF12848 ABC transporter FY034_11775 PF00271 Helicase conserved C-terminal domain FY034_11775 PF00270 DEAD/DEAH box helicase FY034_11780 PF00211 Adenylate and Guanylate cyclase catalytic domain FY034_11800 PF07085 DRTGG domain FY034_11800 PF02833 DHHA2 domain FY034_11800 PF01368 DHH family FY034_11800 PF00571 CBS domain FY034_11805 PF01996 F420-0:Gamma-glutamyl ligase FY034_11805 PF00881 Nitroreductase family FY034_11810 PF00072 Response regulator receiver domain FY034_11820 PF00313 'Cold-shock' DNA-binding domain FY034_11830 PF07690 Major Facilitator Superfamily FY034_11845 PF00989 PAS fold FY034_11845 PF00512 His Kinase A (phospho-acceptor) domain FY034_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_11850 PF00158 Sigma-54 interaction domain FY034_11850 PF00072 Response regulator receiver domain FY034_11850 PF02954 Bacterial regulatory protein, Fis family FY034_11865 PF01894 Uncharacterised protein family UPF0047 FY034_11870 PF01063 Amino-transferase class IV FY034_11875 PF00216 Bacterial DNA-binding protein FY034_11880 PF00209 Sodium:neurotransmitter symporter family FY034_11895 PF00326 Prolyl oligopeptidase family FY034_11900 PF02558 Ketopantoate reductase PanE/ApbA FY034_11900 PF08546 Ketopantoate reductase PanE/ApbA C terminal FY034_11905 PF00860 Permease family FY034_11915 PF04055 Radical SAM superfamily FY034_11920 PF03099 Biotin/lipoate A/B protein ligase family FY034_11950 PF13649 Methyltransferase domain FY034_11955 PF08003 Protein of unknown function (DUF1698) FY034_11960 PF02347 Glycine cleavage system P-protein FY034_11965 PF02347 Glycine cleavage system P-protein FY034_11970 PF01597 Glycine cleavage H-protein FY034_11980 PF01571 Aminomethyltransferase folate-binding domain FY034_11980 PF08669 Glycine cleavage T-protein C-terminal barrel domain FY034_11990 PF11849 Domain of unknown function (DUF3369) FY034_11995 PF00793 DAHP synthetase I family FY034_11995 PF18152 DAHP synthase ferredoxin-like domain FY034_12000 PF00990 Diguanylate cyclase, GGDEF domain FY034_12005 PF02463 RecF/RecN/SMC N terminal domain FY034_12010 PF01513 ATP-NAD kinase FY034_12015 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_12015 PF00072 Response regulator receiver domain FY034_12015 PF01627 Hpt domain FY034_12015 PF00512 His Kinase A (phospho-acceptor) domain FY034_12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_12015 PF00672 HAMP domain FY034_12025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_12025 PF00512 His Kinase A (phospho-acceptor) domain FY034_12025 PF01627 Hpt domain FY034_12025 PF00072 Response regulator receiver domain FY034_12030 PF02595 Glycerate kinase family FY034_12035 PF00293 NUDIX domain FY034_12035 PF09297 NADH pyrophosphatase zinc ribbon domain FY034_12040 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FY034_12040 PF01266 FAD dependent oxidoreductase FY034_12045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY034_12045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY034_12055 PF01668 SmpB protein FY034_12060 PF03448 MgtE intracellular N domain FY034_12060 PF01769 Divalent cation transporter FY034_12060 PF00571 CBS domain FY034_12065 PF01566 Natural resistance-associated macrophage protein FY034_12070 PF01909 Nucleotidyltransferase domain FY034_12070 PF08335 GlnD PII-uridylyltransferase FY034_12070 PF01966 HD domain FY034_12075 PF00589 Phage integrase family FY034_12075 PF02899 Phage integrase, N-terminal SAM-like domain FY034_12090 PF12706 Beta-lactamase superfamily domain FY034_12090 PF03099 Biotin/lipoate A/B protein ligase family FY034_12095 PF00206 Lyase FY034_12095 PF10397 Adenylosuccinate lyase C-terminus FY034_12100 PF00924 Mechanosensitive ion channel FY034_12115 PF00586 AIR synthase related protein, N-terminal domain FY034_12115 PF02769 AIR synthase related protein, C-terminal domain FY034_12115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FY034_12120 PF00072 Response regulator receiver domain FY034_12120 PF00990 Diguanylate cyclase, GGDEF domain FY034_12130 PF00156 Phosphoribosyl transferase domain FY034_12135 PF00156 Phosphoribosyl transferase domain FY034_12140 PF01479 S4 domain FY034_12140 PF01728 FtsJ-like methyltransferase FY034_12145 PF01230 HIT domain FY034_12160 PF00318 Ribosomal protein S2 FY034_12165 PF00889 Elongation factor TS FY034_12170 PF00696 Amino acid kinase family FY034_12175 PF01765 Ribosome recycling factor FY034_12180 PF01255 Putative undecaprenyl diphosphate synthase FY034_12190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FY034_12190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FY034_12190 PF13288 DXP reductoisomerase C-terminal domain FY034_12195 PF02163 Peptidase family M50 FY034_12195 PF17820 PDZ domain FY034_12200 PF00814 Glycoprotease family FY034_12205 PF08442 ATP-grasp domain FY034_12205 PF00549 CoA-ligase FY034_12210 PF02629 CoA binding domain FY034_12210 PF00549 CoA-ligase FY034_12215 PF02666 Phosphatidylserine decarboxylase FY034_12220 PF13749 Putative ATP-dependent DNA helicase recG C-terminal FY034_12220 PF00270 DEAD/DEAH box helicase FY034_12220 PF17191 RecG wedge domain FY034_12235 PF00072 Response regulator receiver domain FY034_12265 PF01336 OB-fold nucleic acid binding domain FY034_12265 PF02811 PHP domain FY034_12265 PF14579 Helix-hairpin-helix motif FY034_12265 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY034_12265 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY034_12270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FY034_12275 PF00849 RNA pseudouridylate synthase FY034_12275 PF01479 S4 domain FY034_12280 PF00152 tRNA synthetases class II (D, K and N) FY034_12280 PF01336 OB-fold nucleic acid binding domain FY034_12285 PF04456 Protein of unknown function (DUF503) FY034_12290 PF01966 HD domain FY034_12290 PF07697 7TM-HD extracellular FY034_12290 PF07698 7TM receptor with intracellular HD hydrolase FY034_12295 PF02130 Uncharacterized protein family UPF0054 FY034_12300 PF00571 CBS domain FY034_12300 PF03471 Transporter associated domain FY034_12305 PF00795 Carbon-nitrogen hydrolase FY034_12315 PF00877 NlpC/P60 family FY034_12335 PF05698 Bacterial trigger factor protein (TF) C-terminus FY034_12340 PF01339 CheB methylesterase FY034_12340 PF00072 Response regulator receiver domain FY034_12350 PF05175 Methyltransferase small domain FY034_12360 PF13439 Glycosyltransferase Family 4 FY034_12360 PF00534 Glycosyl transferases group 1 FY034_12365 PF00535 Glycosyl transferase family 2 FY034_12370 PF00535 Glycosyl transferase family 2 FY034_12375 PF01531 Glycosyl transferase family 11 FY034_12390 PF01370 NAD dependent epimerase/dehydratase family FY034_12405 PF00535 Glycosyl transferase family 2 FY034_12415 PF01578 Cytochrome C assembly protein FY034_12420 PF05140 ResB-like family FY034_12430 PF02843 Phosphoribosylglycinamide synthetase, C domain FY034_12430 PF02844 Phosphoribosylglycinamide synthetase, N domain FY034_12430 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FY034_12435 PF02142 MGS-like domain FY034_12435 PF01808 AICARFT/IMPCHase bienzyme FY034_12445 PF01168 Alanine racemase, N-terminal domain FY034_12445 PF00842 Alanine racemase, C-terminal domain FY034_12450 PF02581 Thiamine monophosphate synthase FY034_12450 PF08543 Phosphomethylpyrimidine kinase FY034_12455 PF01964 Radical SAM ThiC family FY034_12460 PF01402 Ribbon-helix-helix protein, copG family FY034_12460 PF08753 NikR C terminal nickel binding domain FY034_12470 PF00005 ABC transporter FY034_12475 PF02361 Cobalt transport protein FY034_12480 PF13190 PDGLE domain FY034_12480 PF01891 Cobalt uptake substrate-specific transmembrane region FY034_12485 PF02146 Sir2 family FY034_12490 PF00563 EAL domain FY034_12490 PF00990 Diguanylate cyclase, GGDEF domain FY034_12490 PF03707 Bacterial signalling protein N terminal repeat FY034_12510 PF00171 Aldehyde dehydrogenase family FY034_12515 PF03707 Bacterial signalling protein N terminal repeat FY034_12515 PF00563 EAL domain FY034_12515 PF00990 Diguanylate cyclase, GGDEF domain FY034_12520 PF00672 HAMP domain FY034_12520 PF02743 Cache domain FY034_12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_12535 PF00075 RNase H FY034_12545 PF00563 EAL domain FY034_12545 PF08668 HDOD domain FY034_12550 PF03462 PCRF domain FY034_12550 PF00472 RF-1 domain FY034_12555 PF01713 Smr domain FY034_12555 PF00488 MutS domain V FY034_12565 PF13419 Haloacid dehalogenase-like hydrolase FY034_12570 PF03707 Bacterial signalling protein N terminal repeat FY034_12570 PF00990 Diguanylate cyclase, GGDEF domain FY034_12570 PF00563 EAL domain FY034_12575 PF00072 Response regulator receiver domain FY034_12575 PF02954 Bacterial regulatory protein, Fis family FY034_12575 PF00158 Sigma-54 interaction domain FY034_12580 PF00989 PAS fold FY034_12580 PF00512 His Kinase A (phospho-acceptor) domain FY034_12580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_12585 PF01207 Dihydrouridine synthase (Dus) FY034_12590 PF02416 mttA/Hcf106 family FY034_12595 PF00011 Hsp20/alpha crystallin family FY034_12600 PF00374 Nickel-dependent hydrogenase FY034_12605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_12610 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FY034_12615 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FY034_12615 PF00037 4Fe-4S binding domain FY034_12615 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY034_12640 PF01612 3'-5' exonuclease FY034_12640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FY034_12640 PF01367 5'-3' exonuclease, C-terminal SAM fold FY034_12640 PF00476 DNA polymerase family A FY034_12645 PF02565 Recombination protein O C terminal FY034_12645 PF11967 Recombination protein O N terminal FY034_12665 PF00793 DAHP synthetase I family FY034_12665 PF18152 DAHP synthase ferredoxin-like domain FY034_12670 PF00027 Cyclic nucleotide-binding domain FY034_12670 PF13545 Crp-like helix-turn-helix domain FY034_12675 PF02779 Transketolase, pyrimidine binding domain FY034_12675 PF02780 Transketolase, C-terminal domain FY034_12675 PF00456 Transketolase, thiamine diphosphate binding domain FY034_12680 PF02769 AIR synthase related protein, C-terminal domain FY034_12680 PF00586 AIR synthase related protein, N-terminal domain FY034_12685 PF02190 ATP-dependent protease La (LON) substrate-binding domain FY034_12685 PF00004 ATPase family associated with various cellular activities (AAA) FY034_12685 PF05362 Lon protease (S16) C-terminal proteolytic domain FY034_12700 PF00149 Calcineurin-like phosphoesterase FY034_12705 PF04851 Type III restriction enzyme, res subunit FY034_12705 PF18074 Primosomal protein N C-terminal domain FY034_12705 PF17764 3′ DNA-binding domain (3′BD) FY034_12705 PF00271 Helicase conserved C-terminal domain FY034_12705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FY034_12710 PF01464 Transglycosylase SLT domain FY034_12715 PF06490 Flagellar regulatory protein FleQ FY034_12715 PF02954 Bacterial regulatory protein, Fis family FY034_12715 PF00158 Sigma-54 interaction domain FY034_12720 PF01584 CheW-like domain FY034_12725 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_12725 PF01627 Hpt domain FY034_12725 PF01584 CheW-like domain FY034_12725 PF00072 Response regulator receiver domain FY034_12730 PF03705 CheR methyltransferase, all-alpha domain FY034_12730 PF01739 CheR methyltransferase, SAM binding domain FY034_12740 PF01339 CheB methylesterase FY034_12740 PF00072 Response regulator receiver domain FY034_12750 PF00009 Elongation factor Tu GTP binding domain FY034_12750 PF03144 Elongation factor Tu domain 2 FY034_12750 PF16658 Class II release factor RF3, C-terminal domain FY034_12755 PF07681 DoxX FY034_12765 PF01121 Dephospho-CoA kinase FY034_12770 PF01170 Putative RNA methylase family UPF0020 FY034_12770 PF10672 S-adenosylmethionine-dependent methyltransferase FY034_12770 PF02926 THUMP domain FY034_12780 PF05973 Phage derived protein Gp49-like (DUF891) FY034_12795 PF00158 Sigma-54 interaction domain FY034_12795 PF00072 Response regulator receiver domain FY034_12795 PF02954 Bacterial regulatory protein, Fis family FY034_12800 PF13188 PAS domain FY034_12800 PF00989 PAS fold FY034_12800 PF00512 His Kinase A (phospho-acceptor) domain FY034_12800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_12800 PF13426 PAS domain FY034_12820 PF00226 DnaJ domain FY034_12820 PF01556 DnaJ C terminal domain FY034_12820 PF00684 DnaJ central domain FY034_12825 PF00012 Hsp70 protein FY034_12830 PF01025 GrpE FY034_12835 PF01628 HrcA protein C terminal domain FY034_12835 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FY034_12840 PF01177 Asp/Glu/Hydantoin racemase FY034_12945 PF10124 Mu-like prophage major head subunit gpT FY034_12965 PF04233 Phage Mu protein F like protein FY034_12970 PF06074 Protein of unknown function (DUF935) FY034_12980 PF11985 Protein of unknown function (DUF3486) FY034_12985 PF08461 Ribonuclease R winged-helix domain FY034_13015 PF01555 DNA methylase FY034_13115 PF13276 HTH-like domain FY034_13115 PF13333 Integrase core domain FY034_13115 PF00665 Integrase core domain FY034_13180 PF02384 N-6 DNA Methylase FY034_13180 PF12161 HsdM N-terminal domain FY034_13200 PF18766 SWI2/SNF2 ATPase FY034_13200 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FY034_13200 PF11867 Domain of unknown function (DUF3387) FY034_13210 PF02796 Helix-turn-helix domain of resolvase FY034_13210 PF00239 Resolvase, N terminal domain FY034_13235 PF00004 ATPase family associated with various cellular activities (AAA) FY034_13235 PF17862 AAA+ lid domain FY034_13235 PF06480 FtsH Extracellular FY034_13235 PF01434 Peptidase family M41 FY034_13355 PF01934 Protein of unknown function DUF86 FY034_13375 PF07715 TonB-dependent Receptor Plug Domain FY034_13375 PF00593 TonB dependent receptor FY034_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13385 PF00512 His Kinase A (phospho-acceptor) domain FY034_13385 PF00989 PAS fold FY034_13390 PF00158 Sigma-54 interaction domain FY034_13390 PF00072 Response regulator receiver domain FY034_13390 PF02954 Bacterial regulatory protein, Fis family FY034_13400 PF00378 Enoyl-CoA hydratase/isomerase FY034_13415 PF00474 Sodium:solute symporter family FY034_13425 PF02390 Putative methyltransferase FY034_13440 PF16360 GTP-binding GTPase Middle Region FY034_13440 PF13167 GTP-binding GTPase N-terminal FY034_13440 PF01926 50S ribosome-binding GTPase FY034_13450 PF00196 Bacterial regulatory proteins, luxR family FY034_13450 PF00072 Response regulator receiver domain FY034_13455 PF07730 Histidine kinase FY034_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13455 PF05384 Sensor protein DegS FY034_13475 PF01594 AI-2E family transporter FY034_13480 PF00403 Heavy-metal-associated domain FY034_13490 PF00563 EAL domain FY034_13490 PF03707 Bacterial signalling protein N terminal repeat FY034_13490 PF00990 Diguanylate cyclase, GGDEF domain FY034_13495 PF13426 PAS domain FY034_13495 PF13188 PAS domain FY034_13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13495 PF00512 His Kinase A (phospho-acceptor) domain FY034_13495 PF00989 PAS fold FY034_13505 PF01627 Hpt domain FY034_13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13505 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_13505 PF01584 CheW-like domain FY034_13510 PF00672 HAMP domain FY034_13510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_13510 PF17200 Single Cache domain 2 FY034_13515 PF01584 CheW-like domain FY034_13520 PF01739 CheR methyltransferase, SAM binding domain FY034_13520 PF03705 CheR methyltransferase, all-alpha domain FY034_13525 PF03975 CheD chemotactic sensory transduction FY034_13530 PF00072 Response regulator receiver domain FY034_13530 PF01339 CheB methylesterase FY034_13535 PF00672 HAMP domain FY034_13535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_13535 PF00072 Response regulator receiver domain FY034_13535 PF01627 Hpt domain FY034_13535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13535 PF00512 His Kinase A (phospho-acceptor) domain FY034_13540 PF00072 Response regulator receiver domain FY034_13540 PF00486 Transcriptional regulatory protein, C terminal FY034_13550 PF00533 BRCA1 C Terminus (BRCT) domain FY034_13550 PF01653 NAD-dependent DNA ligase adenylation domain FY034_13550 PF03120 NAD-dependent DNA ligase OB-fold domain FY034_13550 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FY034_13550 PF12826 Helix-hairpin-helix motif FY034_13555 PF00166 Chaperonin 10 Kd subunit FY034_13560 PF00118 TCP-1/cpn60 chaperonin family FY034_13580 PF00263 Bacterial type II and III secretion system protein FY034_13580 PF03958 Bacterial type II/III secretion system short domain FY034_13585 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FY034_13585 PF00437 Type II/IV secretion system protein FY034_13590 PF00482 Type II secretion system (T2SS), protein F FY034_13595 PF13401 AAA domain FY034_13595 PF01471 Putative peptidoglycan binding domain FY034_13610 PF00114 Pilin (bacterial filament) FY034_13610 PF07963 Prokaryotic N-terminal methylation motif FY034_13630 PF00762 Ferrochelatase FY034_13645 PF00072 Response regulator receiver domain FY034_13645 PF00486 Transcriptional regulatory protein, C terminal FY034_13650 PF00512 His Kinase A (phospho-acceptor) domain FY034_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13650 PF00672 HAMP domain FY034_13660 PF00156 Phosphoribosyl transferase domain FY034_13665 PF02082 Transcriptional regulator FY034_13670 PF02540 NAD synthase FY034_13690 PF00158 Sigma-54 interaction domain FY034_13690 PF00072 Response regulator receiver domain FY034_13690 PF02954 Bacterial regulatory protein, Fis family FY034_13695 PF00512 His Kinase A (phospho-acceptor) domain FY034_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13705 PF08447 PAS fold FY034_13705 PF08448 PAS fold FY034_13710 PF00583 Acetyltransferase (GNAT) family FY034_13720 PF04073 Aminoacyl-tRNA editing domain FY034_13725 PF00586 AIR synthase related protein, N-terminal domain FY034_13725 PF02769 AIR synthase related protein, C-terminal domain FY034_13735 PF13525 Outer membrane lipoprotein FY034_13740 PF02660 Glycerol-3-phosphate acyltransferase FY034_13750 PF00072 Response regulator receiver domain FY034_13750 PF01627 Hpt domain FY034_13750 PF00512 His Kinase A (phospho-acceptor) domain FY034_13750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_13750 PF00672 HAMP domain FY034_13755 PF00072 Response regulator receiver domain FY034_13765 PF00989 PAS fold FY034_13765 PF00512 His Kinase A (phospho-acceptor) domain FY034_13765 PF01627 Hpt domain FY034_13765 PF00072 Response regulator receiver domain FY034_13765 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_13765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_13770 PF03631 Virulence factor BrkB FY034_13775 PF08534 Redoxin FY034_13785 PF08447 PAS fold FY034_13785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_13785 PF13426 PAS domain FY034_13790 PF00484 Carbonic anhydrase FY034_13795 PF00857 Isochorismatase family FY034_13810 PF00437 Type II/IV secretion system protein FY034_13820 PF00155 Aminotransferase class I and II FY034_13830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_13835 PF01207 Dihydrouridine synthase (Dus) FY034_13840 PF12801 4Fe-4S binding domain FY034_13895 PF08240 Alcohol dehydrogenase GroES-like domain FY034_13895 PF00107 Zinc-binding dehydrogenase FY034_13910 PF02810 SEC-C motif FY034_13915 PF03458 UPF0126 domain FY034_13935 PF08240 Alcohol dehydrogenase GroES-like domain FY034_13940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FY034_13940 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FY034_13945 PF03922 OmpW family FY034_13965 PF00313 'Cold-shock' DNA-binding domain FY034_13975 PF00005 ABC transporter FY034_13975 PF12848 ABC transporter FY034_13985 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FY034_13985 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FY034_13995 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_13995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FY034_14000 PF04898 Glutamate synthase central domain FY034_14000 PF00310 Glutamine amidotransferases class-II FY034_14000 PF01645 Conserved region in glutamate synthase FY034_14000 PF01493 GXGXG motif FY034_14020 PF01636 Phosphotransferase enzyme family FY034_14025 PF03880 DbpA RNA binding domain FY034_14025 PF00270 DEAD/DEAH box helicase FY034_14025 PF00271 Helicase conserved C-terminal domain FY034_14050 PF04286 Protein of unknown function (DUF445) FY034_14065 PF01980 tRNA-methyltransferase O FY034_14065 PF18389 TrmO C-terminal domain FY034_14070 PF07685 CobB/CobQ-like glutamine amidotransferase domain FY034_14080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FY034_14080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FY034_14090 PF03960 ArsC family FY034_14100 PF13188 PAS domain FY034_14100 PF03707 Bacterial signalling protein N terminal repeat FY034_14100 PF00990 Diguanylate cyclase, GGDEF domain FY034_14100 PF00563 EAL domain FY034_14105 PF01546 Peptidase family M20/M25/M40 FY034_14105 PF07687 Peptidase dimerisation domain FY034_14130 PF00155 Aminotransferase class I and II FY034_14145 PF05173 Dihydrodipicolinate reductase, C-terminus FY034_14145 PF01113 Dihydrodipicolinate reductase, N-terminus FY034_14150 PF00701 Dihydrodipicolinate synthetase family FY034_14155 PF03641 Possible lysine decarboxylase FY034_14160 PF13145 PPIC-type PPIASE domain FY034_14165 PF01259 SAICAR synthetase FY034_14180 PF01814 Hemerythrin HHE cation binding domain FY034_14185 PF13654 AAA domain FY034_14185 PF05362 Lon protease (S16) C-terminal proteolytic domain FY034_14190 PF00990 Diguanylate cyclase, GGDEF domain FY034_14190 PF00072 Response regulator receiver domain FY034_14200 PF01209 ubiE/COQ5 methyltransferase family FY034_14205 PF02457 DisA bacterial checkpoint controller nucleotide-binding FY034_14210 PF01476 LysM domain FY034_14210 PF00877 NlpC/P60 family FY034_14215 PF04055 Radical SAM superfamily FY034_14225 PF03976 Polyphosphate kinase 2 (PPK2) FY034_14245 PF01924 Hydrogenase formation hypA family FY034_14250 PF01455 HupF/HypC family FY034_14255 PF07503 HypF finger FY034_14255 PF01300 Telomere recombination FY034_14255 PF17788 HypF Kae1-like domain FY034_14255 PF00708 Acylphosphatase FY034_14260 PF02492 CobW/HypB/UreG, nucleotide-binding domain FY034_14265 PF00005 ABC transporter FY034_14265 PF00664 ABC transporter transmembrane region FY034_14270 PF00291 Pyridoxal-phosphate dependent enzyme FY034_14280 PF01053 Cys/Met metabolism PLP-dependent enzyme FY034_14285 PF01053 Cys/Met metabolism PLP-dependent enzyme FY034_14290 PF00899 ThiF family FY034_14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_14300 PF00512 His Kinase A (phospho-acceptor) domain FY034_14310 PF02607 B12 binding domain FY034_14310 PF02310 B12 binding domain FY034_14310 PF02965 Vitamin B12 dependent methionine synthase, activation domain FY034_14310 PF02574 Homocysteine S-methyltransferase FY034_14310 PF00809 Pterin binding enzyme FY034_14315 PF00158 Sigma-54 interaction domain FY034_14315 PF00072 Response regulator receiver domain FY034_14315 PF02954 Bacterial regulatory protein, Fis family FY034_14325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_14325 PF00529 HlyD membrane-fusion protein of T1SS FY034_14330 PF00873 AcrB/AcrD/AcrF family FY034_14340 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FY034_14345 PF02277 Phosphoribosyltransferase FY034_14350 PF02654 Cobalamin-5-phosphate synthase FY034_14355 PF00300 Histidine phosphatase superfamily (branch 1) FY034_14355 PF13456 Reverse transcriptase-like FY034_14390 PF01938 TRAM domain FY034_14390 PF04055 Radical SAM superfamily FY034_14390 PF00919 Uncharacterized protein family UPF0004 FY034_14395 PF04794 YdjC-like protein FY034_14405 PF03807 NADP oxidoreductase coenzyme F420-dependent FY034_14405 PF14748 Pyrroline-5-carboxylate reductase dimerisation FY034_14410 PF00128 Alpha amylase, catalytic domain FY034_14410 PF09154 Domain of unknown function (DUF1939) FY034_14420 PF01202 Shikimate kinase FY034_14435 PF01522 Polysaccharide deacetylase FY034_14445 PF01614 Bacterial transcriptional regulator FY034_14445 PF09339 IclR helix-turn-helix domain FY034_14465 PF00005 ABC transporter FY034_14470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_14485 PF01145 SPFH domain / Band 7 family FY034_14485 PF16200 C-terminal region of band_7 FY034_14490 PF14437 MafB19-like deaminase FY034_14510 PF04055 Radical SAM superfamily FY034_14510 PF13186 Iron-sulfur cluster-binding domain FY034_14520 PF00025 ADP-ribosylation factor family FY034_14540 PF00361 Proton-conducting membrane transporter FY034_14545 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus FY034_14545 PF00361 Proton-conducting membrane transporter FY034_14550 PF00361 Proton-conducting membrane transporter FY034_14550 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FY034_14555 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FY034_14560 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FY034_14565 PF12838 4Fe-4S dicluster domain FY034_14570 PF00146 NADH dehydrogenase FY034_14575 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FY034_14575 PF01568 Molydopterin dinucleotide binding domain FY034_14575 PF00384 Molybdopterin oxidoreductase FY034_14575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY034_14575 PF13237 4Fe-4S dicluster domain FY034_14580 PF00037 4Fe-4S binding domain FY034_14580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FY034_14580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FY034_14590 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FY034_14595 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FY034_14600 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FY034_14605 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FY034_14610 PF00202 Aminotransferase class-III FY034_14625 PF00119 ATP synthase A chain FY034_14630 PF00137 ATP synthase subunit C FY034_14640 PF14698 Argininosuccinate lyase C-terminal FY034_14640 PF00206 Lyase FY034_14650 PF00293 NUDIX domain FY034_14655 PF00764 Arginosuccinate synthase FY034_14660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY034_14660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY034_14665 PF00202 Aminotransferase class-III FY034_14675 PF00696 Amino acid kinase family FY034_14680 PF00512 His Kinase A (phospho-acceptor) domain FY034_14680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_14680 PF00672 HAMP domain FY034_14685 PF02272 DHHA1 domain FY034_14685 PF01411 tRNA synthetases class II (A) FY034_14685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY034_14710 PF02631 RecX family FY034_14715 PF00437 Type II/IV secretion system protein FY034_14720 PF00154 recA bacterial DNA recombination protein FY034_14725 PF02464 Competence-damaged protein FY034_14725 PF18146 Damage-inducible protein CinA KH domain FY034_14725 PF00994 Probable molybdopterin binding domain FY034_14730 PF01969 Protein of unknown function DUF111 FY034_14735 PF00731 AIR carboxylase FY034_14740 PF00330 Aconitase family (aconitate hydratase) FY034_14745 PF00694 Aconitase C-terminal domain FY034_14750 PF02416 mttA/Hcf106 family FY034_14755 PF16199 Radical_SAM C-terminal domain FY034_14755 PF04055 Radical SAM superfamily FY034_14760 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FY034_14760 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FY034_14765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY034_14765 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY034_14770 PF00231 ATP synthase FY034_14775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY034_14775 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY034_14775 PF00306 ATP synthase alpha/beta chain, C terminal domain FY034_14780 PF00213 ATP synthase delta (OSCP) subunit FY034_14785 PF00430 ATP synthase B/B' CF(0) FY034_14795 PF17762 HTH domain found in ParB protein FY034_14795 PF02195 ParB-like nuclease domain FY034_14800 PF13614 AAA domain FY034_14805 PF00849 RNA pseudouridylate synthase FY034_14810 PF06962 Putative rRNA methylase FY034_14820 PF02405 Permease MlaE FY034_14825 PF00005 ABC transporter FY034_14840 PF05494 MlaC protein FY034_14845 PF00313 'Cold-shock' DNA-binding domain FY034_14850 PF11842 Domain of unknown function (DUF3362) FY034_14850 PF04055 Radical SAM superfamily FY034_14850 PF08497 Radical SAM N-terminal FY034_14855 PF01118 Semialdehyde dehydrogenase, NAD binding domain FY034_14855 PF02774 Semialdehyde dehydrogenase, dimerisation domain FY034_14860 PF01594 AI-2E family transporter FY034_14865 PF00380 Ribosomal protein S9/S16 FY034_14870 PF00572 Ribosomal protein L13 FY034_14875 PF02686 Glu-tRNAGln amidotransferase C subunit FY034_14880 PF01425 Amidase FY034_14885 PF02934 GatB/GatE catalytic domain FY034_14885 PF02637 GatB domain FY034_14890 PF00072 Response regulator receiver domain FY034_14895 PF07194 P2 response regulator binding domain FY034_14895 PF01627 Hpt domain FY034_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_14895 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_14895 PF01584 CheW-like domain FY034_14900 PF03548 Outer membrane lipoprotein carrier protein LolA FY034_14905 PF04461 Protein of unknown function (DUF520) FY034_14920 PF18273 Type III R-M EcoP15I C-terminal domain FY034_14920 PF01555 DNA methylase FY034_14930 PF04055 Radical SAM superfamily FY034_14930 PF18693 TRAM domain FY034_14930 PF00919 Uncharacterized protein family UPF0004 FY034_14940 PF13439 Glycosyltransferase Family 4 FY034_14940 PF00534 Glycosyl transferases group 1 FY034_14980 PF04015 Domain of unknown function (DUF362) FY034_14985 PF08448 PAS fold FY034_14985 PF08447 PAS fold FY034_14985 PF00563 EAL domain FY034_14985 PF13426 PAS domain FY034_14985 PF00990 Diguanylate cyclase, GGDEF domain FY034_14985 PF05231 MASE1 FY034_15005 PF01966 HD domain FY034_15005 PF00013 KH domain FY034_15005 PF12072 Domain of unknown function (DUF3552) FY034_15015 PF01327 Polypeptide deformylase FY034_15020 PF02911 Formyl transferase, C-terminal domain FY034_15020 PF00551 Formyl transferase FY034_15040 PF00437 Type II/IV secretion system protein FY034_15045 PF02705 K+ potassium transporter FY034_15050 PF02705 K+ potassium transporter FY034_15055 PF00486 Transcriptional regulatory protein, C terminal FY034_15055 PF00072 Response regulator receiver domain FY034_15060 PF13493 Domain of unknown function (DUF4118) FY034_15060 PF13492 GAF domain FY034_15060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_15060 PF00512 His Kinase A (phospho-acceptor) domain FY034_15060 PF02702 Osmosensitive K+ channel His kinase sensor domain FY034_15065 PF02669 K+-transporting ATPase, c chain FY034_15075 PF03814 Potassium-transporting ATPase A subunit FY034_15085 PF01522 Polysaccharide deacetylase FY034_15095 PF07075 Protein of unknown function (DUF1343) FY034_15100 PF09587 Bacterial capsule synthesis protein PGA_cap FY034_15105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY034_15105 PF02403 Seryl-tRNA synthetase N-terminal domain FY034_15125 PF01569 PAP2 superfamily FY034_15145 PF01569 PAP2 superfamily FY034_15155 PF00486 Transcriptional regulatory protein, C terminal FY034_15155 PF00072 Response regulator receiver domain FY034_15160 PF08521 Two-component sensor kinase N-terminal FY034_15160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_15160 PF00512 His Kinase A (phospho-acceptor) domain FY034_15180 PF07690 Major Facilitator Superfamily FY034_15185 PF17783 CvfB-like winged helix domain FY034_15185 PF13509 S1 domain FY034_15195 PF02470 MlaD protein FY034_15200 PF04403 Paraquat-inducible protein A FY034_15205 PF04403 Paraquat-inducible protein A FY034_15210 PF01208 Uroporphyrinogen decarboxylase (URO-D) FY034_15230 PF00155 Aminotransferase class I and II FY034_15250 PF00709 Adenylosuccinate synthetase FY034_15255 PF13393 Histidyl-tRNA synthetase FY034_15270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY034_15280 PF01642 Methylmalonyl-CoA mutase FY034_15280 PF02310 B12 binding domain FY034_15285 PF02785 Biotin carboxylase C-terminal domain FY034_15285 PF00289 Biotin carboxylase, N-terminal domain FY034_15285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY034_15290 PF01039 Carboxyl transferase domain FY034_15300 PF02754 Cysteine-rich domain FY034_15305 PF01134 Glucose inhibited division protein A FY034_15310 PF01751 Toprim domain FY034_15310 PF01131 DNA topoisomerase FY034_15310 PF01396 Topoisomerase DNA binding C4 zinc finger FY034_15315 PF02481 DNA recombination-mediator protein A FY034_15315 PF17782 DprA winged helix domain FY034_15330 PF01136 Peptidase family U32 FY034_15330 PF16325 Peptidase family U32 C-terminal domain FY034_15335 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FY034_15340 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_15345 PF00772 DnaB-like helicase N terminal domain FY034_15345 PF03796 DnaB-like helicase C terminal domain FY034_15370 PF02119 Flagellar P-ring protein FY034_15375 PF02107 Flagellar L-ring protein FY034_15385 PF00460 Flagella basal body rod protein FY034_15385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY034_15390 PF00460 Flagella basal body rod protein FY034_15390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY034_15395 PF04542 Sigma-70 region 2 FY034_15395 PF04539 Sigma-70 region 3 FY034_15395 PF04545 Sigma-70, region 4 FY034_15400 PF10609 NUBPL iron-transfer P-loop NTPase FY034_15405 PF00448 SRP54-type protein, GTPase domain FY034_15410 PF00771 FHIPEP family FY034_15415 PF01312 FlhB HrpN YscU SpaS Family FY034_15420 PF01311 Bacterial export proteins, family 1 FY034_15425 PF01313 Bacterial export proteins, family 3 FY034_15430 PF00813 FliP family FY034_15440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FY034_15445 PF02154 Flagellar motor switch protein FliM FY034_15445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FY034_15455 PF00460 Flagella basal body rod protein FY034_15455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY034_15485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY034_15485 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY034_15485 PF18269 T3SS EscN ATPase C-terminal domain FY034_15495 PF01706 FliG C-terminal domain FY034_15495 PF14841 FliG middle domain FY034_15495 PF14842 FliG N-terminal domain FY034_15500 PF01514 Secretory protein of YscJ/FliF family FY034_15500 PF08345 Flagellar M-ring protein C-terminal FY034_15505 PF02049 Flagellar hook-basal body complex protein FliE FY034_15510 PF00460 Flagella basal body rod protein FY034_15510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FY034_15515 PF00460 Flagella basal body rod protein FY034_15535 PF00072 Response regulator receiver domain FY034_15540 PF17200 Single Cache domain 2 FY034_15540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_15540 PF00672 HAMP domain FY034_15550 PF00072 Response regulator receiver domain FY034_15560 PF00990 Diguanylate cyclase, GGDEF domain FY034_15565 PF01627 Hpt domain FY034_15565 PF09078 CheY binding FY034_15565 PF01584 CheW-like domain FY034_15565 PF02895 Signal transducing histidine kinase, homodimeric domain FY034_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_15575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY034_15575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY034_15575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY034_15575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY034_15580 PF01312 FlhB HrpN YscU SpaS Family FY034_15590 PF00343 Carbohydrate phosphorylase FY034_15590 PF11897 Protein of unknown function (DUF3417) FY034_15595 PF01678 Diaminopimelate epimerase FY034_15600 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_15605 PF00682 HMGL-like FY034_15605 PF08502 LeuA allosteric (dimerisation) domain FY034_15610 PF00158 Sigma-54 interaction domain FY034_15610 PF13185 GAF domain FY034_15610 PF02954 Bacterial regulatory protein, Fis family FY034_15615 PF03707 Bacterial signalling protein N terminal repeat FY034_15615 PF00990 Diguanylate cyclase, GGDEF domain FY034_15615 PF00563 EAL domain FY034_15620 PF03707 Bacterial signalling protein N terminal repeat FY034_15620 PF00990 Diguanylate cyclase, GGDEF domain FY034_15620 PF00563 EAL domain FY034_15630 PF12706 Beta-lactamase superfamily domain FY034_15630 PF03099 Biotin/lipoate A/B protein ligase family FY034_15645 PF01212 Beta-eliminating lyase FY034_15655 PF00672 HAMP domain FY034_15655 PF17202 Single cache domain 3 FY034_15655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_15660 PF01739 CheR methyltransferase, SAM binding domain FY034_15660 PF03705 CheR methyltransferase, all-alpha domain FY034_15675 PF03167 Uracil DNA glycosylase superfamily FY034_15685 PF04127 DNA / pantothenate metabolism flavoprotein FY034_15685 PF02441 Flavoprotein FY034_15690 PF00753 Metallo-beta-lactamase superfamily FY034_15700 PF00301 Rubredoxin FY034_15705 PF00266 Aminotransferase class-V FY034_15715 PF13247 4Fe-4S dicluster domain FY034_15730 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY034_15785 PF13847 Methyltransferase domain FY034_15795 PF01370 NAD dependent epimerase/dehydratase family FY034_15800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_15805 PF03407 Nucleotide-diphospho-sugar transferase FY034_15815 PF02310 B12 binding domain FY034_15815 PF04055 Radical SAM superfamily FY034_15835 PF00669 Bacterial flagellin N-terminal helical region FY034_15835 PF00700 Bacterial flagellin C-terminal helical region FY034_15840 PF00700 Bacterial flagellin C-terminal helical region FY034_15840 PF00669 Bacterial flagellin N-terminal helical region FY034_15850 PF07378 Flagellar protein FlbT FY034_15855 PF00534 Glycosyl transferases group 1 FY034_15855 PF00535 Glycosyl transferase family 2 FY034_15865 PF00535 Glycosyl transferase family 2 FY034_15885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FY034_15890 PF16363 GDP-mannose 4,6 dehydratase FY034_15895 PF08889 WbqC-like protein family FY034_15900 PF04055 Radical SAM superfamily FY034_15900 PF06463 Molybdenum Cofactor Synthesis C FY034_15915 PF00733 Asparagine synthase FY034_15915 PF13537 Glutamine amidotransferase domain FY034_15920 PF01797 Transposase IS200 like FY034_15925 PF02350 UDP-N-acetylglucosamine 2-epimerase FY034_15930 PF08485 Polysaccharide biosynthesis protein C-terminal FY034_15930 PF02719 Polysaccharide biosynthesis protein FY034_15935 PF04321 RmlD substrate binding domain FY034_15940 PF00158 Sigma-54 interaction domain FY034_15940 PF00072 Response regulator receiver domain FY034_15940 PF02954 Bacterial regulatory protein, Fis family FY034_15945 PF00989 PAS fold FY034_15945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_15945 PF00512 His Kinase A (phospho-acceptor) domain FY034_15955 PF00005 ABC transporter FY034_15955 PF00664 ABC transporter transmembrane region FY034_15960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY034_15960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY034_15965 PF09084 NMT1/THI5 like FY034_15970 PF00528 Binding-protein-dependent transport system inner membrane component FY034_15975 PF00005 ABC transporter FY034_15980 PF08753 NikR C terminal nickel binding domain FY034_15980 PF01402 Ribbon-helix-helix protein, copG family FY034_15995 PF02785 Biotin carboxylase C-terminal domain FY034_15995 PF00364 Biotin-requiring enzyme FY034_15995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY034_15995 PF00289 Biotin carboxylase, N-terminal domain FY034_16000 PF01425 Amidase FY034_16010 PF00436 Single-strand binding protein family FY034_16015 PF01553 Acyltransferase FY034_16030 PF00753 Metallo-beta-lactamase superfamily FY034_16030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FY034_16030 PF17770 Ribonuclease J C-terminal domain FY034_16035 PF00501 AMP-binding enzyme FY034_16035 PF13193 AMP-binding enzyme C-terminal domain FY034_16040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY034_16045 PF03109 ABC1 family FY034_16055 PF07690 Major Facilitator Superfamily FY034_16060 PF01734 Patatin-like phospholipase FY034_16070 PF00005 ABC transporter FY034_16075 PF13533 Biotin-lipoyl like FY034_16080 PF00072 Response regulator receiver domain FY034_16100 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FY034_16105 PF00535 Glycosyl transferase family 2 FY034_16115 PF08359 YsiA-like protein, C-terminal region FY034_16115 PF00440 Bacterial regulatory proteins, tetR family FY034_16120 PF02253 Phospholipase A1 FY034_16125 PF02321 Outer membrane efflux protein FY034_16130 PF00873 AcrB/AcrD/AcrF family FY034_16135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_16135 PF00529 HlyD membrane-fusion protein of T1SS FY034_16140 PF16295 Tetracyclin repressor-like, C-terminal domain FY034_16140 PF00440 Bacterial regulatory proteins, tetR family FY034_16145 PF16925 Tetracyclin repressor-like, C-terminal domain FY034_16145 PF00440 Bacterial regulatory proteins, tetR family FY034_16150 PF00691 OmpA family FY034_16150 PF13677 Membrane MotB of proton-channel complex MotA/MotB FY034_16155 PF00679 Elongation factor G C-terminus FY034_16155 PF03144 Elongation factor Tu domain 2 FY034_16155 PF00009 Elongation factor Tu GTP binding domain FY034_16160 PF08448 PAS fold FY034_16160 PF00990 Diguanylate cyclase, GGDEF domain FY034_16170 PF17757 UvrB interaction domain FY034_16170 PF12344 Ultra-violet resistance protein B FY034_16170 PF02151 UvrB/uvrC motif FY034_16170 PF04851 Type III restriction enzyme, res subunit FY034_16170 PF00271 Helicase conserved C-terminal domain FY034_16175 PF00072 Response regulator receiver domain FY034_16175 PF01627 Hpt domain FY034_16175 PF17149 Periplasmic sensor domain found in signal transduction proteins FY034_16175 PF00672 HAMP domain FY034_16175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_16175 PF00512 His Kinase A (phospho-acceptor) domain FY034_16200 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FY034_16205 PF03749 Sugar fermentation stimulation protein RE domain FY034_16205 PF17746 SfsA N-terminal OB domain FY034_16220 PF00905 Penicillin binding protein transpeptidase domain FY034_16220 PF17092 Penicillin-binding protein OB-like domain FY034_16220 PF00912 Transglycosylase FY034_16225 PF13091 PLD-like domain FY034_16225 PF13396 Phospholipase_D-nuclease N-terminal FY034_16230 PF01026 TatD related DNase FY034_16245 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FY034_16250 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FY034_16250 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FY034_16265 PF00873 AcrB/AcrD/AcrF family FY034_16275 PF13533 Biotin-lipoyl like FY034_16285 PF00691 OmpA family FY034_16290 PF07676 WD40-like Beta Propeller Repeat FY034_16290 PF04052 TolB amino-terminal domain FY034_16300 PF02472 Biopolymer transport protein ExbD/TolR FY034_16305 PF01618 MotA/TolQ/ExbB proton channel family FY034_16310 PF00795 Carbon-nitrogen hydrolase FY034_16315 PF01580 FtsK/SpoIIIE family FY034_16315 PF09397 Ftsk gamma domain FY034_16315 PF17854 FtsK alpha domain FY034_16315 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FY034_16330 PF00561 alpha/beta hydrolase fold FY034_16335 PF01171 PP-loop family FY034_16340 PF02542 YgbB family FY034_16345 PF00072 Response regulator receiver domain FY034_16350 PF01106 NifU-like domain FY034_16365 PF02463 RecF/RecN/SMC N terminal domain FY034_16365 PF06470 SMC proteins Flexible Hinge Domain FY034_16375 PF02881 SRP54-type protein, helical bundle domain FY034_16375 PF00448 SRP54-type protein, GTPase domain FY034_16390 PF01812 5-formyltetrahydrofolate cyclo-ligase family FY034_16395 PF12072 Domain of unknown function (DUF3552) FY034_16395 PF00013 KH domain FY034_16395 PF01966 HD domain FY034_16400 PF13277 YmdB-like protein FY034_16405 PF01479 S4 domain FY034_16405 PF00579 tRNA synthetases class I (W and Y) FY034_16420 PF02666 Phosphatidylserine decarboxylase FY034_16435 PF02899 Phage integrase, N-terminal SAM-like domain FY034_16435 PF00589 Phage integrase family FY034_16440 PF10672 S-adenosylmethionine-dependent methyltransferase FY034_16440 PF17785 PUA-like domain FY034_16445 PF00005 ABC transporter FY034_16445 PF00664 ABC transporter transmembrane region FY034_16450 PF00005 ABC transporter FY034_16450 PF00664 ABC transporter transmembrane region FY034_16455 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV FY034_16460 PF03462 PCRF domain FY034_16460 PF00472 RF-1 domain FY034_16475 PF00005 ABC transporter FY034_16475 PF16326 ABC transporter C-terminal domain FY034_16475 PF12848 ABC transporter FY034_16480 PF09905 DNA-binding protein VF530 FY034_16485 PF00270 DEAD/DEAH box helicase FY034_16485 PF00271 Helicase conserved C-terminal domain FY034_16490 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY034_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_16490 PF00512 His Kinase A (phospho-acceptor) domain FY034_16495 PF02954 Bacterial regulatory protein, Fis family FY034_16495 PF00072 Response regulator receiver domain FY034_16495 PF00158 Sigma-54 interaction domain FY034_16500 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FY034_16500 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain FY034_16500 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FY034_16505 PF00857 Isochorismatase family FY034_16515 PF00248 Aldo/keto reductase family FY034_16520 PF12804 MobA-like NTP transferase domain FY034_16520 PF00132 Bacterial transferase hexapeptide (six repeats) FY034_16525 PF02625 XdhC and CoxI family FY034_16525 PF13478 XdhC Rossmann domain FY034_16530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FY034_16535 PF01799 [2Fe-2S] binding domain FY034_16535 PF00111 2Fe-2S iron-sulfur cluster binding domain FY034_16540 PF00691 OmpA family FY034_16555 PF00465 Iron-containing alcohol dehydrogenase FY034_16560 PF12833 Helix-turn-helix domain FY034_16560 PF06719 AraC-type transcriptional regulator N-terminus FY034_16570 PF18766 SWI2/SNF2 ATPase FY034_16570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FY034_16570 PF11867 Domain of unknown function (DUF3387) FY034_16590 PF02384 N-6 DNA Methylase FY034_16590 PF12161 HsdM N-terminal domain FY034_16600 PF01590 GAF domain FY034_16600 PF02954 Bacterial regulatory protein, Fis family FY034_16600 PF00158 Sigma-54 interaction domain FY034_16605 PF03605 Anaerobic c4-dicarboxylate membrane transporter FY034_16610 PF00890 FAD binding domain FY034_16610 PF14537 Cytochrome c3 FY034_16615 PF07694 5TMR of 5TMR-LYT FY034_16615 PF13492 GAF domain FY034_16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_16615 PF06580 Histidine kinase FY034_16620 PF00072 Response regulator receiver domain FY034_16620 PF04397 LytTr DNA-binding domain FY034_16625 PF01070 FMN-dependent dehydrogenase FY034_16630 PF12849 PBP superfamily domain FY034_16635 PF02416 mttA/Hcf106 family FY034_16645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FY034_16650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FY034_16650 PF00384 Molybdopterin oxidoreductase FY034_16650 PF01568 Molydopterin dinucleotide binding domain FY034_16655 PF01370 NAD dependent epimerase/dehydratase family FY034_16665 PF03186 CobD/Cbib protein FY034_16670 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FY034_16675 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FY034_16690 PF07804 HipA-like C-terminal domain FY034_16690 PF13657 HipA N-terminal domain FY034_16700 PF07685 CobB/CobQ-like glutamine amidotransferase domain FY034_16700 PF00155 Aminotransferase class I and II FY034_16700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FY034_16705 PF02954 Bacterial regulatory protein, Fis family FY034_16705 PF00158 Sigma-54 interaction domain FY034_16705 PF00072 Response regulator receiver domain FY034_16710 PF08240 Alcohol dehydrogenase GroES-like domain FY034_16710 PF00107 Zinc-binding dehydrogenase FY034_16715 PF02885 Glycosyl transferase family, helical bundle domain FY034_16715 PF00591 Glycosyl transferase family, a/b domain FY034_16725 PF07715 TonB-dependent Receptor Plug Domain FY034_16725 PF00593 TonB dependent receptor FY034_16730 PF01497 Periplasmic binding protein FY034_16735 PF01032 FecCD transport family FY034_16740 PF00005 ABC transporter FY034_16750 PF00929 Exonuclease FY034_16750 PF00929 Exonuclease FY034_16755 PF07152 YaeQ protein FY034_16760 PF06794 Uncharacterised protein family (UPF0270) FY034_16765 PF01554 MatE FY034_16770 PF00072 Response regulator receiver domain FY034_16775 PF08448 PAS fold FY034_16775 PF00990 Diguanylate cyclase, GGDEF domain FY034_16780 PF08446 PAS fold FY034_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_16780 PF01590 GAF domain FY034_16780 PF00360 Phytochrome region FY034_16780 PF00512 His Kinase A (phospho-acceptor) domain FY034_16785 PF07732 Multicopper oxidase FY034_16785 PF07731 Multicopper oxidase FY034_16785 PF00394 Multicopper oxidase FY034_16790 PF02896 PEP-utilising enzyme, TIM barrel domain FY034_16790 PF00391 PEP-utilising enzyme, mobile domain FY034_16790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FY034_16795 PF00009 Elongation factor Tu GTP binding domain FY034_16795 PF09106 Elongation factor SelB, winged helix FY034_16795 PF03144 Elongation factor Tu domain 2 FY034_16795 PF09107 Elongation factor SelB, winged helix FY034_16810 PF01844 HNH endonuclease FY034_16815 PF00072 Response regulator receiver domain FY034_16815 PF00486 Transcriptional regulatory protein, C terminal FY034_16820 PF00005 ABC transporter FY034_16820 PF02687 FtsX-like permease family FY034_16820 PF12704 MacB-like periplasmic core domain FY034_16825 PF01661 Macro domain FY034_16840 PF01882 Protein of unknown function DUF58 FY034_16845 PF07726 ATPase family associated with various cellular activities (AAA) FY034_16845 PF17863 AAA lid domain FY034_16875 PF06271 RDD family FY034_16880 PF01261 Xylose isomerase-like TIM barrel FY034_16885 PF03453 MoeA N-terminal region (domain I and II) FY034_16885 PF00994 Probable molybdopterin binding domain FY034_16885 PF03454 MoeA C-terminal region (domain IV) FY034_16890 PF02445 Quinolinate synthetase A protein FY034_16910 PF01016 Ribosomal L27 protein FY034_16915 PF00829 Ribosomal prokaryotic L21 protein FY034_16920 PF01557 Fumarylacetoacetate (FAA) hydrolase family FY034_16925 PF01909 Nucleotidyltransferase domain FY034_16935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FY034_16935 PF01676 Metalloenzyme superfamily FY034_16940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FY034_16950 PF01008 Initiation factor 2 subunit family FY034_16955 PF03710 Glutamate-ammonia ligase adenylyltransferase FY034_16955 PF08335 GlnD PII-uridylyltransferase FY034_16975 PF00171 Aldehyde dehydrogenase family FY034_16990 PF00486 Transcriptional regulatory protein, C terminal FY034_16990 PF00072 Response regulator receiver domain FY034_16995 PF00512 His Kinase A (phospho-acceptor) domain FY034_16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_16995 PF00989 PAS fold FY034_16995 PF13426 PAS domain FY034_16995 PF13188 PAS domain FY034_17000 PF00582 Universal stress protein family FY034_17005 PF02954 Bacterial regulatory protein, Fis family FY034_17005 PF00072 Response regulator receiver domain FY034_17005 PF00158 Sigma-54 interaction domain FY034_17025 PF01048 Phosphorylase superfamily FY034_17030 PF17152 Periplasmic sensor domain FY034_17030 PF00990 Diguanylate cyclase, GGDEF domain FY034_17040 PF04055 Radical SAM superfamily FY034_17045 PF00334 Nucleoside diphosphate kinase FY034_17050 PF01189 16S rRNA methyltransferase RsmB/F FY034_17050 PF01029 NusB family FY034_17055 PF00834 Ribulose-phosphate 3 epimerase family FY034_17060 PF00072 Response regulator receiver domain FY034_17060 PF00990 Diguanylate cyclase, GGDEF domain FY034_17070 PF05193 Peptidase M16 inactive domain FY034_17070 PF00675 Insulinase (Peptidase family M16) FY034_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_17080 PF00989 PAS fold FY034_17080 PF00512 His Kinase A (phospho-acceptor) domain FY034_17080 PF00672 HAMP domain FY034_17095 PF06733 DEAD_2 FY034_17095 PF13307 Helicase C-terminal domain FY034_17100 PF16326 ABC transporter C-terminal domain FY034_17100 PF00005 ABC transporter FY034_17100 PF12848 ABC transporter FY034_17105 PF12704 MacB-like periplasmic core domain FY034_17105 PF02687 FtsX-like permease family FY034_17105 PF00005 ABC transporter FY034_17110 PF02590 Predicted SPOUT methyltransferase FY034_17120 PF01467 Cytidylyltransferase-like FY034_17125 PF01370 NAD dependent epimerase/dehydratase family FY034_17125 PF00551 Formyl transferase FY034_17125 PF02911 Formyl transferase, C-terminal domain FY034_17130 PF00551 Formyl transferase FY034_17130 PF02911 Formyl transferase, C-terminal domain FY034_17130 PF01370 NAD dependent epimerase/dehydratase family FY034_17135 PF00535 Glycosyl transferase family 2 FY034_17140 PF00570 HRDC domain FY034_17140 PF01612 3'-5' exonuclease FY034_17145 PF04055 Radical SAM superfamily FY034_17150 PF03061 Thioesterase superfamily FY034_17155 PF02527 rRNA small subunit methyltransferase G FY034_17160 PF01134 Glucose inhibited division protein A FY034_17160 PF13932 GidA associated domain FY034_17165 PF12631 MnmE helical domain FY034_17165 PF10396 GTP-binding protein TrmE N-terminus FY034_17165 PF01926 50S ribosome-binding GTPase FY034_17170 PF02096 60Kd inner membrane protein FY034_17170 PF14849 YidC periplasmic domain FY034_17175 PF01809 Putative membrane protein insertion efficiency factor FY034_17180 PF00825 Ribonuclease P FY034_17185 PF00468 Ribosomal protein L34 FY034_17265 PF13426 PAS domain FY034_17265 PF00563 EAL domain FY034_17265 PF00990 Diguanylate cyclase, GGDEF domain FY034_17270 PF00072 Response regulator receiver domain FY034_17270 PF08769 Sporulation initiation factor Spo0A C terminal FY034_17330 PF00580 UvrD/REP helicase N-terminal domain FY034_17330 PF13361 UvrD-like helicase C-terminal domain FY034_17340 PF01131 DNA topoisomerase FY034_17340 PF01751 Toprim domain FY034_17365 PF17876 Cold shock domain FY034_17365 PF08461 Ribonuclease R winged-helix domain FY034_17365 PF08206 Ribonuclease B OB domain FY034_17365 PF00773 RNB domain FY034_17365 PF00575 S1 RNA binding domain FY034_17430 PF02384 N-6 DNA Methylase FY034_17470 PF00580 UvrD/REP helicase N-terminal domain FY034_17470 PF13361 UvrD-like helicase C-terminal domain FY034_17490 PF00313 'Cold-shock' DNA-binding domain FY034_17515 PF04193 PQ loop repeat FY034_17525 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FY034_17525 PF17768 RecJ OB domain FY034_17525 PF02272 DHHA1 domain FY034_17525 PF01368 DHH family FY034_17530 PF00990 Diguanylate cyclase, GGDEF domain FY034_17555 PF00436 Single-strand binding protein family FY034_17565 PF00929 Exonuclease FY034_17565 PF02811 PHP domain FY034_17565 PF01336 OB-fold nucleic acid binding domain FY034_17565 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY034_17565 PF14480 DNA polymerase III polC-type N-terminus I FY034_17565 PF14579 Helix-hairpin-helix motif FY034_17565 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY034_17565 PF11490 DNA polymerase III polC-type N-terminus II FY034_17595 PF00145 C-5 cytosine-specific DNA methylase FY034_17615 PF04055 Radical SAM superfamily FY034_17615 PF01938 TRAM domain FY034_17615 PF00919 Uncharacterized protein family UPF0004 FY034_17640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_17640 PF00512 His Kinase A (phospho-acceptor) domain FY034_17640 PF00072 Response regulator receiver domain FY034_17640 PF08448 PAS fold FY034_17640 PF13188 PAS domain FY034_17645 PF02954 Bacterial regulatory protein, Fis family FY034_17645 PF00072 Response regulator receiver domain FY034_17645 PF00158 Sigma-54 interaction domain FY034_17650 PF12762 ISXO2-like transposase domain FY034_17660 PF00216 Bacterial DNA-binding protein FY034_17675 PF13614 AAA domain FY034_17685 PF12826 Helix-hairpin-helix motif FY034_17685 PF03120 NAD-dependent DNA ligase OB-fold domain FY034_17685 PF01653 NAD-dependent DNA ligase adenylation domain FY034_17685 PF00533 BRCA1 C Terminus (BRCT) domain FY034_17695 PF00772 DnaB-like helicase N terminal domain FY034_17695 PF14528 LAGLIDADG-like domain FY034_17695 PF03796 DnaB-like helicase C terminal domain FY034_17705 PF00772 DnaB-like helicase N terminal domain FY034_17705 PF03796 DnaB-like helicase C terminal domain FY034_17705 PF14528 LAGLIDADG-like domain FY034_17715 PF03167 Uracil DNA glycosylase superfamily FY034_17720 PF12762 ISXO2-like transposase domain FY034_17735 PF00266 Aminotransferase class-V FY034_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY034_17740 PF03466 LysR substrate binding domain FY034_17795 PF14490 Helix-hairpin-helix containing domain FY034_17795 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FY034_17795 PF13538 UvrD-like helicase C-terminal domain FY034_17855 PF01351 Ribonuclease HII FY034_17990 PF01139 tRNA-splicing ligase RtcB FY034_18005 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FY034_18005 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FY034_18005 PF01000 RNA polymerase Rpb3/RpoA insert domain FY034_18050 PF02934 GatB/GatE catalytic domain FY034_18050 PF02637 GatB domain FY034_18085 PF03477 ATP cone domain FY034_18085 PF02867 Ribonucleotide reductase, barrel domain FY034_18085 PF00317 Ribonucleotide reductase, all-alpha domain FY034_18140 PF00691 OmpA family FY034_18180 PF05951 Bacterial protein of unknown function (DUF882) FY034_18190 PF00216 Bacterial DNA-binding protein FY034_18210 PF13361 UvrD-like helicase C-terminal domain FY034_18210 PF00580 UvrD/REP helicase N-terminal domain FY034_18225 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FY034_18230 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FY034_18245 PF01923 Cobalamin adenosyltransferase FY034_18250 PF03449 Transcription elongation factor, N-terminal FY034_18250 PF01272 Transcription elongation factor, GreA/GreB, C-term FY034_18275 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FY034_18275 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FY034_18280 PF04262 Glutamate-cysteine ligase FY034_18295 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FY034_18300 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FY034_18315 PF04956 TrbC/VIRB2 family FY034_18320 PF00437 Type II/IV secretion system protein FY034_18345 PF00902 Sec-independent protein translocase protein (TatC) FY034_18350 PF02416 mttA/Hcf106 family FY034_18355 PF08241 Methyltransferase domain FY034_18365 PF02416 mttA/Hcf106 family FY034_18375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FY034_18375 PF00925 GTP cyclohydrolase II FY034_18380 PF02416 mttA/Hcf106 family FY034_18395 PF00072 Response regulator receiver domain FY034_18395 PF08448 PAS fold FY034_18395 PF13188 PAS domain FY034_18395 PF00512 His Kinase A (phospho-acceptor) domain FY034_18395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_18405 PF00258 Flavodoxin FY034_18415 PF01638 HxlR-like helix-turn-helix FY034_18455 PF13188 PAS domain FY034_18455 PF08448 PAS fold FY034_18455 PF00512 His Kinase A (phospho-acceptor) domain FY034_18455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_18455 PF00072 Response regulator receiver domain FY034_18460 PF12390 Selenocysteine synthase N terminal FY034_18460 PF03841 L-seryl-tRNA selenium transferase FY034_18465 PF07729 FCD domain FY034_18465 PF00392 Bacterial regulatory proteins, gntR family FY034_18480 PF01370 NAD dependent epimerase/dehydratase family FY034_18485 PF02661 Fic/DOC family FY034_18490 PF01743 Poly A polymerase head domain FY034_18490 PF12627 Probable RNA and SrmB- binding site of polymerase A FY034_18490 PF02272 DHHA1 domain FY034_18490 PF00571 CBS domain FY034_18490 PF01368 DHH family FY034_18495 PF07690 Major Facilitator Superfamily FY034_18495 PF00083 Sugar (and other) transporter FY034_18515 PF02416 mttA/Hcf106 family FY034_18545 PF01638 HxlR-like helix-turn-helix FY034_18560 PF13486 Reductive dehalogenase subunit FY034_18560 PF12838 4Fe-4S dicluster domain FY034_18580 PF05697 Bacterial trigger factor protein (TF) FY034_18580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY034_18580 PF05698 Bacterial trigger factor protein (TF) C-terminus FY034_18595 PF00581 Rhodanese-like domain FY034_18615 PF00166 Chaperonin 10 Kd subunit FY034_18630 PF03755 YicC-like family, N-terminal region FY034_18630 PF08340 Domain of unknown function (DUF1732) FY034_18635 PF00625 Guanylate kinase FY034_18640 PF01467 Cytidylyltransferase-like FY034_18645 PF02424 ApbE family FY034_18660 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FY034_18665 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FY034_18670 PF03186 CobD/Cbib protein FY034_18690 PF00809 Pterin binding enzyme FY034_18695 PF00893 Small Multidrug Resistance protein FY034_18725 PF13358 DDE superfamily endonuclease FY034_18730 PF13243 Squalene-hopene cyclase C-terminal domain FY034_18730 PF13249 Squalene-hopene cyclase N-terminal domain FY034_18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY034_18745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FY034_18745 PF00072 Response regulator receiver domain FY034_18745 PF01627 Hpt domain FY034_18745 PF00512 His Kinase A (phospho-acceptor) domain FY034_18745 PF00672 HAMP domain FY034_18765 PF00809 Pterin binding enzyme FY034_18770 PF00893 Small Multidrug Resistance protein FY034_18830 PF13173 AAA domain FY034_18830 PF13635 Domain of unknown function (DUF4143) FY034_18845 PF02899 Phage integrase, N-terminal SAM-like domain FY034_18845 PF00589 Phage integrase family FY034_18905 PF00196 Bacterial regulatory proteins, luxR family FY034_18905 PF00072 Response regulator receiver domain FY034_18910 PF07730 Histidine kinase FY034_18920 PF01027 Inhibitor of apoptosis-promoting Bax1 FY034_18925 PF00589 Phage integrase family FY034_18925 PF02899 Phage integrase, N-terminal SAM-like domain FY034_18950 PF00216 Bacterial DNA-binding protein