locus-tag	class	description
TrAFT101_000032	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
TrAFT101_000070	COG0076	glutamate decarboxylase activity
TrAFT101_000071	COG0076	glutamate decarboxylase activity
TrAFT101_000090	COG2169	Transcriptional regulator
TrAFT101_000113	COG0473	3-isopropylmalate dehydrogenase activity
TrAFT101_000113	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
TrAFT101_000226	COG1063	alcohol dehydrogenase
TrAFT101_000266	COG0604	alcohol dehydrogenase
TrAFT101_000363	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
TrAFT101_000363	COG1017	nitric oxide dioxygenase activity
TrAFT101_000432	COG3961	Belongs to the TPP enzyme family
TrAFT101_000863	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TrAFT101_000863	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TrAFT101_001007	COG1073	alpha beta
TrAFT101_001024	COG0489	protein tyrosine kinase activity
TrAFT101_001493	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
TrAFT101_001669	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
TrAFT101_001707	COG2267	carboxylic ester hydrolase activity
TrAFT101_001748	COG0363	glucosamine-6-phosphate deaminase activity
TrAFT101_002235	COG1397	ADP-ribosylglycohydrolase
TrAFT101_002285	COG1252	NADH dehydrogenase
TrAFT101_002287	COG0191	fructose-bisphosphate aldolase activity
TrAFT101_002412	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TrAFT101_002412	COG2169	Transcriptional regulator
TrAFT101_002439	COG4221	oxidoreductase activity
TrAFT101_002588	COG0625	glutathione transferase activity
TrAFT101_002715	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
TrAFT101_002916	COG0183	Belongs to the thiolase family
TrAFT101_003005	COG0656	L-ascorbic acid biosynthetic process
TrAFT101_003038	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TrAFT101_003111	COG3507	Belongs to the glycosyl hydrolase 43 family
TrAFT101_003139	COG0500	methyltransferase
TrAFT101_003224	COG1872	DUF167
TrAFT101_003326	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TrAFT101_003593	COG3185	4-Hydroxyphenylpyruvate dioxygenase
TrAFT101_003633	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TrAFT101_003661	COG1024	Enoyl-CoA hydratase
TrAFT101_003768	COG4336	lyase activity
TrAFT101_004007	COG1902	pentaerythritol trinitrate reductase activity
TrAFT101_004012	COG0484	heat shock protein binding
TrAFT101_004181	COG1404	Belongs to the peptidase S8 family
TrAFT101_004502	COG1132	(ABC) transporter
TrAFT101_004606	COG0154	amidase activity
TrAFT101_004610	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
TrAFT101_004767	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
TrAFT101_005483	COG2814	Major facilitator Superfamily
TrAFT101_005691	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
TrAFT101_005893	COG2169	Transcriptional regulator
TrAFT101_005893	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TrAFT101_006006	COG0142	geranyltranstransferase activity
TrAFT101_006163	COG2814	Major facilitator Superfamily
TrAFT101_006171	COG2070	2-Nitropropane dioxygenase
TrAFT101_006371	COG1082	Xylose isomerase domain protein TIM barrel
TrAFT101_006399	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
TrAFT101_006445	COG3250	beta-galactosidase activity
TrAFT101_006447	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
TrAFT101_006464	COG0076	glutamate decarboxylase activity
TrAFT101_006491	COG2169	Transcriptional regulator
TrAFT101_006491	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TrAFT101_006515	COG0702	epimerase
TrAFT101_007173	COG4581	dead DEAH box helicase
TrAFT101_007231	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TrAFT101_007403	COG3971	2-oxopent-4-enoate hydratase activity
TrAFT101_007417	COG0165	Argininosuccinate lyase
TrAFT101_007418	COG0165	Argininosuccinate lyase
TrAFT101_007534	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
TrAFT101_007929	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TrAFT101_007986	COG2267	carboxylic ester hydrolase activity
TrAFT101_008057	COG0604	alcohol dehydrogenase
TrAFT101_008124	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
TrAFT101_008179	COG0662	Cupin 2, conserved barrel domain protein
TrAFT101_008193	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
TrAFT101_008194	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TrAFT101_008204	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
TrAFT101_008264	COG2843	Capsule synthesis protein
TrAFT101_008297	COG0183	Belongs to the thiolase family
TrAFT101_008345	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
TrAFT101_008387	COG0154	amidase activity
TrAFT101_008541	COG1012	belongs to the aldehyde dehydrogenase family
TrAFT101_008643	COG0523	cobalamin synthesis protein
TrAFT101_008760	COG2272	Belongs to the type-B carboxylesterase lipase family
TrAFT101_009081	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
TrAFT101_009206	COG0484	heat shock protein binding
TrAFT101_009383	COG0673	inositol 2-dehydrogenase activity
TrAFT101_009405	COG1902	pentaerythritol trinitrate reductase activity
TrAFT101_009474	COG1073	alpha beta
TrAFT101_009584	COG3250	beta-galactosidase activity
TrAFT101_009595	COG0163	prenyltransferase activity
TrAFT101_009715	COG0823	Involved in the tonB-independent uptake of proteins
TrAFT101_009909	COG0175	sulfate reduction
TrAFT101_010076	COG4122	O-methyltransferase activity
TrAFT101_010301	COG0321	lipoyl(octanoyl) transferase activity
TrAFT101_010367	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TrAFT101_010529	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
TrAFT101_010535	COG1073	alpha beta
TrAFT101_010572	COG1028	Short-chain dehydrogenase reductase Sdr
TrAFT101_010587	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TrAFT101_010639	COG0596	Alpha beta hydrolase
TrAFT101_010764	COG0667	Aldo Keto reductase
TrAFT101_010849	COG1028	Short-chain dehydrogenase reductase Sdr
TrAFT101_010878	COG4221	oxidoreductase activity
TrAFT101_011023	COG0076	glutamate decarboxylase activity
TrAFT101_011050	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TrAFT101_011054	COG0625	glutathione transferase activity
TrAFT101_011092	COG1028	Short-chain dehydrogenase reductase Sdr
TrAFT101_011172	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
TrAFT101_011229	COG2267	carboxylic ester hydrolase activity
TrAFT101_011331	COG0519	Catalyzes the synthesis of GMP from XMP
TrAFT101_011355	COG3903	Transcriptional regulator
TrAFT101_011355	COG3629	intracellular signal transduction
TrAFT101_011518	COG4221	oxidoreductase activity
TrAFT101_011712	COG2319	Wd-40 repeat
TrAFT101_011880	COG1064	alcohol dehydrogenase
TrAFT101_011946	COG2267	carboxylic ester hydrolase activity