locus-tag class description Trad_0001 PF08299 Bacterial dnaA protein helix-turn-helix Trad_0001 PF11638 DnaA N-terminal domain Trad_0001 PF00308 Bacterial dnaA protein Trad_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Trad_0002 PF02767 DNA polymerase III beta subunit, central domain Trad_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Trad_0003 PF00113 Enolase, C-terminal TIM barrel domain Trad_0003 PF03952 Enolase, N-terminal domain Trad_0004 PF02887 Pyruvate kinase, alpha/beta domain Trad_0004 PF00224 Pyruvate kinase, barrel domain Trad_0005 PF03948 Ribosomal protein L9, C-terminal domain Trad_0005 PF01281 Ribosomal protein L9, N-terminal domain Trad_0006 PF01084 Ribosomal protein S18 Trad_0007 PF00436 Single-strand binding protein family Trad_0008 PF01250 Ribosomal protein S6 Trad_0011 PF00012 Hsp70 protein Trad_0013 PF00226 DnaJ domain Trad_0013 PF01556 DnaJ C terminal domain Trad_0015 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Trad_0015 PF01243 Pyridoxamine 5'-phosphate oxidase Trad_0017 PF03190 Protein of unknown function, DUF255 Trad_0019 PF12705 PD-(D/E)XK nuclease superfamily Trad_0019 PF13361 UvrD-like helicase C-terminal domain Trad_0019 PF00580 UvrD/REP helicase N-terminal domain Trad_0021 PF01245 Ribosomal protein L19 Trad_0022 PF00829 Ribosomal prokaryotic L21 protein Trad_0023 PF01016 Ribosomal L27 protein Trad_0024 PF01926 50S ribosome-binding GTPase Trad_0024 PF01018 GTP1/OBG Trad_0024 PF09269 Domain of unknown function (DUF1967) Trad_0025 PF01467 Cytidylyltransferase-like Trad_0029 PF02021 Uncharacterised protein family UPF0102 Trad_0030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Trad_0031 PF01039 Carboxyl transferase domain Trad_0034 PF01883 Iron-sulfur cluster assembly protein Trad_0035 PF02590 Predicted SPOUT methyltransferase Trad_0036 PF02511 Thymidylate synthase complementing protein Trad_0037 PF00395 S-layer homology domain Trad_0038 PF00132 Bacterial transferase hexapeptide (six repeats) Trad_0038 PF12804 MobA-like NTP transferase domain Trad_0041 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Trad_0041 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Trad_0042 PF01022 Bacterial regulatory protein, arsR family Trad_0045 PF03776 Septum formation topological specificity factor MinE Trad_0046 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Trad_0047 PF13361 UvrD-like helicase C-terminal domain Trad_0047 PF00580 UvrD/REP helicase N-terminal domain Trad_0048 PF12833 Helix-turn-helix domain Trad_0048 PF00730 HhH-GPD superfamily base excision DNA repair protein Trad_0048 PF06029 AlkA N-terminal domain Trad_0048 PF02805 Metal binding domain of Ada Trad_0049 PF09988 Uncharacterized metal-binding protein (DUF2227) Trad_0050 PF13416 Bacterial extracellular solute-binding protein Trad_0051 PF00005 ABC transporter Trad_0051 PF08402 TOBE domain Trad_0054 PF16868 NMT1-like family Trad_0055 PF02515 CoA-transferase family III Trad_0057 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_0057 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Trad_0057 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_0059 PF00795 Carbon-nitrogen hydrolase Trad_0059 PF00583 Acetyltransferase (GNAT) family Trad_0060 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Trad_0060 PF01266 FAD dependent oxidoreductase Trad_0061 PF02423 Ornithine cyclodeaminase/mu-crystallin family Trad_0062 PF01960 ArgJ family Trad_0063 PF01118 Semialdehyde dehydrogenase, NAD binding domain Trad_0063 PF02774 Semialdehyde dehydrogenase, dimerisation domain Trad_0064 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Trad_0064 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Trad_0066 PF01478 Type IV leader peptidase family Trad_0066 PF06750 Bacterial Peptidase A24 N-terminal domain Trad_0068 PF01746 tRNA (Guanine-1)-methyltransferase Trad_0069 PF05239 PRC-barrel domain Trad_0069 PF01782 RimM N-terminal domain Trad_0071 PF00886 Ribosomal protein S16 Trad_0072 PF02978 Signal peptide binding domain Trad_0072 PF00448 SRP54-type protein, GTPase domain Trad_0072 PF02881 SRP54-type protein, helical bundle domain Trad_0075 PF13145 PPIC-type PPIASE domain Trad_0076 PF01808 AICARFT/IMPCHase bienzyme Trad_0076 PF02142 MGS-like domain Trad_0077 PF02867 Ribonucleotide reductase, barrel domain Trad_0077 PF02867 Ribonucleotide reductase, barrel domain Trad_0077 PF03477 ATP cone domain Trad_0077 PF00317 Ribonucleotide reductase, all-alpha domain Trad_0077 PF00317 Ribonucleotide reductase, all-alpha domain Trad_0077 PF03477 ATP cone domain Trad_0080 PF17944 Arginine decarboxylase C-terminal helical extension Trad_0080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Trad_0080 PF17810 Arginine decarboxylase helical bundle domain Trad_0081 PF01544 CorA-like Mg2+ transporter protein Trad_0082 PF02861 Clp amino terminal domain, pathogenicity island component Trad_0082 PF17871 AAA lid domain Trad_0082 PF07724 AAA domain (Cdc48 subfamily) Trad_0082 PF00004 ATPase family associated with various cellular activities (AAA) Trad_0082 PF10431 C-terminal, D2-small domain, of ClpB protein Trad_0083 PF00977 Histidine biosynthesis protein Trad_0086 PF01053 Cys/Met metabolism PLP-dependent enzyme Trad_0091 PF00440 Bacterial regulatory proteins, tetR family Trad_0094 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Trad_0094 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Trad_0095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Trad_0095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Trad_0095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Trad_0096 PF02233 NAD(P) transhydrogenase beta subunit Trad_0097 PF01464 Transglycosylase SLT domain Trad_0100 PF02719 Polysaccharide biosynthesis protein Trad_0102 PF02397 Bacterial sugar transferase Trad_0105 PF07683 Cobalamin synthesis protein cobW C-terminal domain Trad_0105 PF02492 CobW/HypB/UreG, nucleotide-binding domain Trad_0112 PF01032 FecCD transport family Trad_0113 PF00005 ABC transporter Trad_0115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trad_0116 PF07669 Eco57I restriction-modification methylase Trad_0119 PF02384 N-6 DNA Methylase Trad_0120 PF00171 Aldehyde dehydrogenase family Trad_0121 PF00202 Aminotransferase class-III Trad_0122 PF01593 Flavin containing amine oxidoreductase Trad_0124 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0125 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0128 PF01970 Tripartite tricarboxylate transporter TctA family Trad_0130 PF00464 Serine hydroxymethyltransferase Trad_0132 PF00128 Alpha amylase, catalytic domain Trad_0132 PF03423 Carbohydrate binding domain (family 25) Trad_0132 PF01373 Glycosyl hydrolase family 14 Trad_0133 PF02386 Cation transport protein Trad_0134 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Trad_0134 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Trad_0135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Trad_0135 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_0137 PF00171 Aldehyde dehydrogenase family Trad_0139 PF00270 DEAD/DEAH box helicase Trad_0139 PF00271 Helicase conserved C-terminal domain Trad_0139 PF02559 CarD-like/TRCF domain Trad_0139 PF17757 UvrB interaction domain Trad_0139 PF03461 TRCF domain Trad_0140 PF13419 Haloacid dehalogenase-like hydrolase Trad_0141 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Trad_0147 PF00694 Aconitase C-terminal domain Trad_0147 PF00330 Aconitase family (aconitate hydratase) Trad_0150 PF00085 Thioredoxin Trad_0151 PF01979 Amidohydrolase family Trad_0154 PF05685 Putative restriction endonuclease Trad_0155 PF04055 Radical SAM superfamily Trad_0157 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0158 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0158 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_0159 PF00005 ABC transporter Trad_0159 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_0160 PF00005 ABC transporter Trad_0160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_0161 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Trad_0162 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_0162 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_0163 PF01370 NAD dependent epimerase/dehydratase family Trad_0164 PF00583 Acetyltransferase (GNAT) family Trad_0165 PF01676 Metalloenzyme superfamily Trad_0165 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Trad_0168 PF13476 AAA domain Trad_0170 PF12323 Helix-turn-helix domain Trad_0170 PF07282 Putative transposase DNA-binding domain Trad_0170 PF01385 Probable transposase Trad_0171 PF01036 Bacteriorhodopsin-like protein Trad_0173 PF01648 4'-phosphopantetheinyl transferase superfamily Trad_0174 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Trad_0175 PF00578 AhpC/TSA family Trad_0176 PF07724 AAA domain (Cdc48 subfamily) Trad_0176 PF00004 ATPase family associated with various cellular activities (AAA) Trad_0176 PF02861 Clp amino terminal domain, pathogenicity island component Trad_0176 PF10431 C-terminal, D2-small domain, of ClpB protein Trad_0176 PF17871 AAA lid domain Trad_0177 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Trad_0177 PF01266 FAD dependent oxidoreductase Trad_0178 PF01012 Electron transfer flavoprotein domain Trad_0179 PF01012 Electron transfer flavoprotein domain Trad_0179 PF00766 Electron transfer flavoprotein FAD-binding domain Trad_0180 PF02754 Cysteine-rich domain Trad_0180 PF13183 4Fe-4S dicluster domain Trad_0181 PF00933 Glycosyl hydrolase family 3 N terminal domain Trad_0181 PF01915 Glycosyl hydrolase family 3 C-terminal domain Trad_0182 PF02368 Bacterial Ig-like domain (group 2) Trad_0182 PF00395 S-layer homology domain Trad_0182 PF02638 Glycosyl hydrolase-like 10 Trad_0183 PF01238 Phosphomannose isomerase type I Trad_0184 PF00578 AhpC/TSA family Trad_0186 PF00664 ABC transporter transmembrane region Trad_0186 PF00005 ABC transporter Trad_0190 PF02080 TrkA-C domain Trad_0190 PF03600 Citrate transporter Trad_0192 PF05362 Lon protease (S16) C-terminal proteolytic domain Trad_0192 PF00004 ATPase family associated with various cellular activities (AAA) Trad_0192 PF02190 ATP-dependent protease La (LON) substrate-binding domain Trad_0194 PF03480 Bacterial extracellular solute-binding protein, family 7 Trad_0196 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trad_0200 PF00753 Metallo-beta-lactamase superfamily Trad_0201 PF01189 16S rRNA methyltransferase RsmB/F Trad_0201 PF01029 NusB family Trad_0202 PF04298 Putative neutral zinc metallopeptidase Trad_0203 PF04232 Stage V sporulation protein S (SpoVS) Trad_0204 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trad_0204 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trad_0204 PF00205 Thiamine pyrophosphate enzyme, central domain Trad_0205 PF10369 Small subunit of acetolactate synthase Trad_0206 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trad_0206 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Trad_0207 PF00682 HMGL-like Trad_0207 PF08502 LeuA allosteric (dimerisation) domain Trad_0208 PF08502 LeuA allosteric (dimerisation) domain Trad_0208 PF00682 HMGL-like Trad_0209 PF04898 Glutamate synthase central domain Trad_0209 PF01493 GXGXG motif Trad_0209 PF00310 Glutamine amidotransferases class-II Trad_0209 PF01645 Conserved region in glutamate synthase Trad_0210 PF02780 Transketolase, C-terminal domain Trad_0210 PF02779 Transketolase, pyrimidine binding domain Trad_0211 PF00676 Dehydrogenase E1 component Trad_0212 PF00107 Zinc-binding dehydrogenase Trad_0212 PF08240 Alcohol dehydrogenase GroES-like domain Trad_0215 PF07650 KH domain Trad_0215 PF01926 50S ribosome-binding GTPase Trad_0216 PF00072 Response regulator receiver domain Trad_0216 PF00196 Bacterial regulatory proteins, luxR family Trad_0217 PF08453 Peptidase family M9 N-terminal Trad_0217 PF01752 Collagenase Trad_0217 PF18496 Collagenase G catalytic helper subdomain Trad_0218 PF00762 Ferrochelatase Trad_0219 PF05067 Manganese containing catalase Trad_0220 PF03466 LysR substrate binding domain Trad_0220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trad_0221 PF01218 Coproporphyrinogen III oxidase Trad_0222 PF01208 Uroporphyrinogen decarboxylase (URO-D) Trad_0223 PF00072 Response regulator receiver domain Trad_0223 PF00486 Transcriptional regulatory protein, C terminal Trad_0224 PF00512 His Kinase A (phospho-acceptor) domain Trad_0224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_0225 PF00490 Delta-aminolevulinic acid dehydratase Trad_0227 PF03900 Porphobilinogen deaminase, C-terminal domain Trad_0227 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Trad_0228 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Trad_0228 PF01488 Shikimate / quinate 5-dehydrogenase Trad_0228 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Trad_0231 PF00977 Histidine biosynthesis protein Trad_0232 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Trad_0232 PF06827 Zinc finger found in FPG and IleRS Trad_0232 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Trad_0235 PF01812 5-formyltetrahydrofolate cyclo-ligase family Trad_0237 PF13090 Polyphosphate kinase C-terminal domain 2 Trad_0237 PF02503 Polyphosphate kinase middle domain Trad_0237 PF13089 Polyphosphate kinase N-terminal domain Trad_0237 PF17941 Polyphosphate kinase C-terminal domain 1 Trad_0239 PF02142 MGS-like domain Trad_0240 PF00795 Carbon-nitrogen hydrolase Trad_0241 PF02080 TrkA-C domain Trad_0241 PF02254 TrkA-N domain Trad_0242 PF02386 Cation transport protein Trad_0244 PF02254 TrkA-N domain Trad_0244 PF02080 TrkA-C domain Trad_0245 PF02386 Cation transport protein Trad_0246 PF00027 Cyclic nucleotide-binding domain Trad_0246 PF04960 Glutaminase Trad_0248 PF13860 FlgD Ig-like domain Trad_0248 PF00082 Subtilase family Trad_0248 PF02225 PA domain Trad_0248 PF05922 Peptidase inhibitor I9 Trad_0250 PF03475 3-alpha domain Trad_0250 PF03473 MOSC domain Trad_0252 PF13193 AMP-binding enzyme C-terminal domain Trad_0252 PF16177 Acetyl-coenzyme A synthetase N-terminus Trad_0252 PF00501 AMP-binding enzyme Trad_0253 PF13193 AMP-binding enzyme C-terminal domain Trad_0253 PF00501 AMP-binding enzyme Trad_0253 PF16177 Acetyl-coenzyme A synthetase N-terminus Trad_0255 PF00474 Sodium:solute symporter family Trad_0257 PF02542 YgbB family Trad_0259 PF00395 S-layer homology domain Trad_0261 PF01458 Uncharacterized protein family (UPF0051) Trad_0264 PF01458 Uncharacterized protein family (UPF0051) Trad_0265 PF00005 ABC transporter Trad_0266 PF03793 PASTA domain Trad_0266 PF00069 Protein kinase domain Trad_0268 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Trad_0268 PF00925 GTP cyclohydrolase II Trad_0269 PF00677 Lumazine binding domain Trad_0270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Trad_0270 PF01872 RibD C-terminal domain Trad_0271 PF13426 PAS domain Trad_0271 PF01740 STAS domain Trad_0272 PF02073 Thermophilic metalloprotease (M29) Trad_0273 PF00570 HRDC domain Trad_0273 PF16124 RecQ zinc-binding Trad_0273 PF09382 RQC domain Trad_0273 PF00270 DEAD/DEAH box helicase Trad_0273 PF00271 Helicase conserved C-terminal domain Trad_0274 PF09334 tRNA synthetases class I (M) Trad_0274 PF01588 Putative tRNA binding domain Trad_0274 PF00133 tRNA synthetases class I (I, L, M and V) Trad_0276 PF01235 Sodium:alanine symporter family Trad_0277 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Trad_0277 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Trad_0286 PF02630 SCO1/SenC Trad_0287 PF08338 Domain of unknown function (DUF1731) Trad_0287 PF01370 NAD dependent epimerase/dehydratase family Trad_0289 PF01118 Semialdehyde dehydrogenase, NAD binding domain Trad_0289 PF02774 Semialdehyde dehydrogenase, dimerisation domain Trad_0291 PF04024 PspC domain Trad_0292 PF01370 NAD dependent epimerase/dehydratase family Trad_0293 PF01975 Survival protein SurE Trad_0296 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0297 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0300 PF17191 RecG wedge domain Trad_0300 PF00271 Helicase conserved C-terminal domain Trad_0300 PF00270 DEAD/DEAH box helicase Trad_0302 PF01842 ACT domain Trad_0302 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trad_0302 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Trad_0303 PF00266 Aminotransferase class-V Trad_0308 PF00534 Glycosyl transferases group 1 Trad_0308 PF13579 Glycosyl transferase 4-like domain Trad_0310 PF00664 ABC transporter transmembrane region Trad_0310 PF00005 ABC transporter Trad_0312 PF00132 Bacterial transferase hexapeptide (six repeats) Trad_0312 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Trad_0313 PF07977 FabA-like domain Trad_0314 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0315 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Trad_0316 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Trad_0316 PF00132 Bacterial transferase hexapeptide (six repeats) Trad_0318 PF00814 Glycoprotease family Trad_0320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Trad_0323 PF00625 Guanylate kinase Trad_0324 PF01192 RNA polymerase Rpb6 Trad_0325 PF02441 Flavoprotein Trad_0325 PF04127 DNA / pantothenate metabolism flavoprotein Trad_0326 PF02863 Arginine repressor, C-terminal domain Trad_0326 PF01316 Arginine repressor, DNA binding domain Trad_0328 PF01472 PUA domain Trad_0328 PF00696 Amino acid kinase family Trad_0331 PF01726 LexA DNA binding domain Trad_0331 PF00717 Peptidase S24-like Trad_0333 PF04098 Rad52/22 family double-strand break repair protein Trad_0335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Trad_0335 PF03900 Porphobilinogen deaminase, C-terminal domain Trad_0336 PF00438 S-adenosylmethionine synthetase, N-terminal domain Trad_0336 PF02772 S-adenosylmethionine synthetase, central domain Trad_0336 PF02773 S-adenosylmethionine synthetase, C-terminal domain Trad_0340 PF01638 HxlR-like helix-turn-helix Trad_0341 PF02637 GatB domain Trad_0341 PF02934 GatB/GatE catalytic domain Trad_0343 PF01694 Rhomboid family Trad_0344 PF02577 Bifunctional nuclease Trad_0345 PF00005 ABC transporter Trad_0349 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trad_0349 PF01411 tRNA synthetases class II (A) Trad_0349 PF02272 DHHA1 domain Trad_0350 PF01227 GTP cyclohydrolase I Trad_0352 PF00210 Ferritin-like domain Trad_0355 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Trad_0357 PF00890 FAD binding domain Trad_0357 PF02910 Fumarate reductase flavoprotein C-term Trad_0358 PF13085 2Fe-2S iron-sulfur cluster binding domain Trad_0359 PF01769 Divalent cation transporter Trad_0359 PF00571 CBS domain Trad_0359 PF03448 MgtE intracellular N domain Trad_0363 PF02673 Bacitracin resistance protein BacA Trad_0364 PF01042 Endoribonuclease L-PSP Trad_0366 PF01425 Amidase Trad_0367 PF00468 Ribosomal protein L34 Trad_0368 PF00825 Ribonuclease P Trad_0369 PF01809 Putative membrane protein insertion efficiency factor Trad_0370 PF02096 60Kd inner membrane protein Trad_0373 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Trad_0375 PF02277 Phosphoribosyltransferase Trad_0376 PF07685 CobB/CobQ-like glutamine amidotransferase domain Trad_0376 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Trad_0377 PF00300 Histidine phosphatase superfamily (branch 1) Trad_0378 PF00155 Aminotransferase class I and II Trad_0379 PF03186 CobD/Cbib protein Trad_0380 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Trad_0382 PF02654 Cobalamin-5-phosphate synthase Trad_0383 PF01497 Periplasmic binding protein Trad_0384 PF05175 Methyltransferase small domain Trad_0384 PF17827 PrmC N-terminal domain Trad_0385 PF01252 Signal peptidase (SPase) II Trad_0386 PF05088 Bacterial NAD-glutamate dehydrogenase Trad_0387 PF04055 Radical SAM superfamily Trad_0389 PF00830 Ribosomal L28 family Trad_0390 PF00271 Helicase conserved C-terminal domain Trad_0390 PF17191 RecG wedge domain Trad_0390 PF00270 DEAD/DEAH box helicase Trad_0392 PF01641 SelR domain Trad_0395 PF01063 Amino-transferase class IV Trad_0400 PF00571 CBS domain Trad_0400 PF00478 IMP dehydrogenase / GMP reductase domain Trad_0401 PF13288 DXP reductoisomerase C-terminal domain Trad_0401 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Trad_0401 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Trad_0402 PF00571 CBS domain Trad_0402 PF02163 Peptidase family M50 Trad_0403 PF17284 Spermidine synthase tetramerisation domain Trad_0404 PF02675 S-adenosylmethionine decarboxylase Trad_0405 PF02163 Peptidase family M50 Trad_0405 PF17820 PDZ domain Trad_0406 PF00535 Glycosyl transferase family 2 Trad_0407 PF00753 Metallo-beta-lactamase superfamily Trad_0409 PF07969 Amidohydrolase family Trad_0410 PF00355 Rieske [2Fe-2S] domain Trad_0412 PF03918 Cytochrome C biogenesis protein Trad_0413 PF00578 AhpC/TSA family Trad_0414 PF01578 Cytochrome C assembly protein Trad_0414 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Trad_0415 PF03100 CcmE Trad_0419 PF00005 ABC transporter Trad_0420 PF02683 Cytochrome C biogenesis protein transmembrane region Trad_0428 PF09827 CRISPR associated protein Cas2 Trad_0429 PF01867 CRISPR associated protein Cas1 Trad_0434 PF01933 Uncharacterised protein family UPF0052 Trad_0435 PF03668 P-loop ATPase protein family Trad_0437 PF00117 Glutamine amidotransferase class-I Trad_0438 PF00475 Imidazoleglycerol-phosphate dehydratase Trad_0439 PF00155 Aminotransferase class I and II Trad_0441 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Trad_0442 PF01219 Prokaryotic diacylglycerol kinase Trad_0443 PF02130 Uncharacterized protein family UPF0054 Trad_0444 PF07697 7TM-HD extracellular Trad_0444 PF07698 7TM receptor with intracellular HD hydrolase Trad_0444 PF01966 HD domain Trad_0445 PF02562 PhoH-like protein Trad_0447 PF12127 SigmaW regulon antibacterial Trad_0448 PF01972 Serine dehydrogenase proteinase Trad_0448 PF01957 NfeD-like C-terminal, partner-binding Trad_0451 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_0451 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_0453 PF00696 Amino acid kinase family Trad_0454 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Trad_0454 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trad_0454 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Trad_0454 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Trad_0456 PF01321 Creatinase/Prolidase N-terminal domain Trad_0456 PF00557 Metallopeptidase family M24 Trad_0457 PF00121 Triosephosphate isomerase Trad_0459 PF05362 Lon protease (S16) C-terminal proteolytic domain Trad_0459 PF00004 ATPase family associated with various cellular activities (AAA) Trad_0459 PF02190 ATP-dependent protease La (LON) substrate-binding domain Trad_0460 PF03485 Arginyl tRNA synthetase N terminal domain Trad_0460 PF05746 DALR anticodon binding domain Trad_0460 PF00750 tRNA synthetases class I (R) Trad_0463 PF01565 FAD binding domain Trad_0463 PF02913 FAD linked oxidases, C-terminal domain Trad_0463 PF13183 4Fe-4S dicluster domain Trad_0464 PF00356 Bacterial regulatory proteins, lacI family Trad_0465 PF01547 Bacterial extracellular solute-binding protein Trad_0466 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0467 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0474 PF17768 RecJ OB domain Trad_0474 PF02272 DHHA1 domain Trad_0474 PF01368 DHH family Trad_0477 PF00005 ABC transporter Trad_0479 PF01725 Ham1 family Trad_0480 PF03725 3' exoribonuclease family, domain 2 Trad_0480 PF01138 3' exoribonuclease family, domain 1 Trad_0481 PF01177 Asp/Glu/Hydantoin racemase Trad_0483 PF17876 Cold shock domain Trad_0483 PF00773 RNB domain Trad_0483 PF08206 Ribonuclease B OB domain Trad_0483 PF00575 S1 RNA binding domain Trad_0485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Trad_0485 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Trad_0488 PF01842 ACT domain Trad_0488 PF01817 Chorismate mutase type II Trad_0488 PF00800 Prephenate dehydratase Trad_0491 PF00471 Ribosomal protein L33 Trad_0495 PF00253 Ribosomal protein S14p/S29e Trad_0500 PF00294 pfkB family carbohydrate kinase Trad_0502 PF01112 Asparaginase Trad_0503 PF03775 Septum formation inhibitor MinC, C-terminal domain Trad_0504 PF08241 Methyltransferase domain Trad_0505 PF00664 ABC transporter transmembrane region Trad_0505 PF00005 ABC transporter Trad_0506 PF00005 ABC transporter Trad_0506 PF00664 ABC transporter transmembrane region Trad_0507 PF00425 chorismate binding enzyme Trad_0507 PF04715 Anthranilate synthase component I, N terminal region Trad_0507 PF00117 Glutamine amidotransferase class-I Trad_0508 PF01212 Beta-eliminating lyase Trad_0509 PF08501 Shikimate dehydrogenase substrate binding domain Trad_0509 PF01488 Shikimate / quinate 5-dehydrogenase Trad_0509 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Trad_0511 PF00149 Calcineurin-like phosphoesterase Trad_0518 PF00535 Glycosyl transferase family 2 Trad_0519 PF00535 Glycosyl transferase family 2 Trad_0527 PF01066 CDP-alcohol phosphatidyltransferase Trad_0529 PF00149 Calcineurin-like phosphoesterase Trad_0530 PF02600 Disulfide bond formation protein DsbB Trad_0532 PF00403 Heavy-metal-associated domain Trad_0536 PF08240 Alcohol dehydrogenase GroES-like domain Trad_0536 PF00107 Zinc-binding dehydrogenase Trad_0538 PF01661 Macro domain Trad_0539 PF00082 Subtilase family Trad_0539 PF01483 Proprotein convertase P-domain Trad_0540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Trad_0540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Trad_0548 PF07282 Putative transposase DNA-binding domain Trad_0548 PF12323 Helix-turn-helix domain Trad_0548 PF01385 Probable transposase Trad_0549 PF10531 SLBB domain Trad_0550 PF13567 Domain of unknown function (DUF4131) Trad_0550 PF03772 Competence protein Trad_0550 PF00753 Metallo-beta-lactamase superfamily Trad_0551 PF00069 Protein kinase domain Trad_0554 PF01467 Cytidylyltransferase-like Trad_0555 PF01430 Hsp33 protein Trad_0558 PF00892 EamA-like transporter family Trad_0559 PF02585 GlcNAc-PI de-N-acetylase Trad_0560 PF02660 Glycerol-3-phosphate acyltransferase Trad_0562 PF03006 Haemolysin-III related Trad_0563 PF09844 Uncharacterized conserved protein (COG2071) Trad_0565 PF00027 Cyclic nucleotide-binding domain Trad_0565 PF00520 Ion transport protein Trad_0567 PF01784 NIF3 (NGG1p interacting factor 3) Trad_0568 PF02223 Thymidylate kinase Trad_0569 PF00005 ABC transporter Trad_0570 PF00005 ABC transporter Trad_0570 PF12399 Branched-chain amino acid ATP-binding cassette transporter Trad_0572 PF02653 Branched-chain amino acid transport system / permease component Trad_0573 PF02653 Branched-chain amino acid transport system / permease component Trad_0574 PF00501 AMP-binding enzyme Trad_0577 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Trad_0577 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trad_0578 PF00005 ABC transporter Trad_0580 PF07690 Major Facilitator Superfamily Trad_0581 PF12804 MobA-like NTP transferase domain Trad_0582 PF01738 Dienelactone hydrolase family Trad_0584 PF00271 Helicase conserved C-terminal domain Trad_0584 PF00270 DEAD/DEAH box helicase Trad_0585 PF00486 Transcriptional regulatory protein, C terminal Trad_0585 PF00072 Response regulator receiver domain Trad_0586 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0587 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0588 PF13416 Bacterial extracellular solute-binding protein Trad_0589 PF00069 Protein kinase domain Trad_0589 PF13360 PQQ-like domain Trad_0591 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Trad_0592 PF06689 ClpX C4-type zinc finger Trad_0592 PF10431 C-terminal, D2-small domain, of ClpB protein Trad_0592 PF07724 AAA domain (Cdc48 subfamily) Trad_0593 PF00574 Clp protease Trad_0594 PF05697 Bacterial trigger factor protein (TF) Trad_0594 PF05698 Bacterial trigger factor protein (TF) C-terminus Trad_0595 PF03851 UV-endonuclease UvdE Trad_0600 PF07726 ATPase family associated with various cellular activities (AAA) Trad_0600 PF17863 AAA lid domain Trad_0604 PF02446 4-alpha-glucanotransferase Trad_0606 PF00156 Phosphoribosyl transferase domain Trad_0606 PF05139 Erythromycin esterase Trad_0612 PF07282 Putative transposase DNA-binding domain Trad_0612 PF01385 Probable transposase Trad_0612 PF12323 Helix-turn-helix domain Trad_0614 PF13193 AMP-binding enzyme C-terminal domain Trad_0614 PF00501 AMP-binding enzyme Trad_0616 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0617 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0618 PF01547 Bacterial extracellular solute-binding protein Trad_0619 PF05491 RuvB C-terminal winged helix domain Trad_0619 PF05496 Holliday junction DNA helicase RuvB P-loop domain Trad_0619 PF17864 RuvB AAA lid domain Trad_0620 PF01554 MatE Trad_0621 PF00701 Dihydrodipicolinate synthetase family Trad_0622 PF00551 Formyl transferase Trad_0622 PF01842 ACT domain Trad_0623 PF00156 Phosphoribosyl transferase domain Trad_0624 PF01807 CHC2 zinc finger Trad_0624 PF13662 Toprim domain Trad_0624 PF08275 DNA primase catalytic core, N-terminal domain Trad_0626 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0627 PF00005 ABC transporter Trad_0630 PF13439 Glycosyltransferase Family 4 Trad_0630 PF00534 Glycosyl transferases group 1 Trad_0634 PF12323 Helix-turn-helix domain Trad_0634 PF01385 Probable transposase Trad_0634 PF07282 Putative transposase DNA-binding domain Trad_0637 PF12950 TaqI-like C-terminal specificity domain Trad_0637 PF07669 Eco57I restriction-modification methylase Trad_0638 PF00664 ABC transporter transmembrane region Trad_0638 PF00005 ABC transporter Trad_0640 PF01979 Amidohydrolase family Trad_0641 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Trad_0641 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Trad_0642 PF00156 Phosphoribosyl transferase domain Trad_0644 PF09297 NADH pyrophosphatase zinc ribbon domain Trad_0644 PF00293 NUDIX domain Trad_0645 PF03462 PCRF domain Trad_0645 PF00472 RF-1 domain Trad_0647 PF06153 Cyclic-di-AMP receptor Trad_0651 PF01343 Peptidase family S49 Trad_0652 PF00990 Diguanylate cyclase, GGDEF domain Trad_0652 PF08447 PAS fold Trad_0652 PF00563 EAL domain Trad_0652 PF08448 PAS fold Trad_0654 PF00108 Thiolase, N-terminal domain Trad_0654 PF02803 Thiolase, C-terminal domain Trad_0657 PF02614 Glucuronate isomerase Trad_0659 PF00156 Phosphoribosyl transferase domain Trad_0661 PF00106 short chain dehydrogenase Trad_0664 PF00356 Bacterial regulatory proteins, lacI family Trad_0665 PF03480 Bacterial extracellular solute-binding protein, family 7 Trad_0666 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trad_0667 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0667 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0669 PF00501 AMP-binding enzyme Trad_0669 PF13193 AMP-binding enzyme C-terminal domain Trad_0671 PF01032 FecCD transport family Trad_0673 PF00300 Histidine phosphatase superfamily (branch 1) Trad_0674 PF00300 Histidine phosphatase superfamily (branch 1) Trad_0675 PF01380 SIS domain Trad_0676 PF01593 Flavin containing amine oxidoreductase Trad_0678 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trad_0679 PF13545 Crp-like helix-turn-helix domain Trad_0680 PF01321 Creatinase/Prolidase N-terminal domain Trad_0680 PF00557 Metallopeptidase family M24 Trad_0681 PF01752 Collagenase Trad_0681 PF18496 Collagenase G catalytic helper subdomain Trad_0681 PF08453 Peptidase family M9 N-terminal Trad_0683 PF00953 Glycosyl transferase family 4 Trad_0684 PF02350 UDP-N-acetylglucosamine 2-epimerase Trad_0685 PF02660 Glycerol-3-phosphate acyltransferase Trad_0687 PF18698 Histidine kinase sensor domain Trad_0687 PF00672 HAMP domain Trad_0687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_0687 PF00512 His Kinase A (phospho-acceptor) domain Trad_0687 PF00989 PAS fold Trad_0690 PF00154 recA bacterial DNA recombination protein Trad_0691 PF00196 Bacterial regulatory proteins, luxR family Trad_0691 PF00072 Response regulator receiver domain Trad_0692 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0692 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0694 PF13407 Periplasmic binding protein domain Trad_0695 PF02653 Branched-chain amino acid transport system / permease component Trad_0696 PF00005 ABC transporter Trad_0699 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0699 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0704 PF01266 FAD dependent oxidoreductase Trad_0706 PF00294 pfkB family carbohydrate kinase Trad_0707 PF04024 PspC domain Trad_0712 PF14245 Type IV pilin PilA Trad_0712 PF07963 Prokaryotic N-terminal methylation motif Trad_0718 PF02837 Glycosyl hydrolases family 2, sugar binding domain Trad_0718 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Trad_0718 PF00703 Glycosyl hydrolases family 2 Trad_0720 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0721 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0722 PF04616 Glycosyl hydrolases family 43 Trad_0723 PF00106 short chain dehydrogenase Trad_0724 PF05974 Domain of unknown function (DUF892) Trad_0726 PF05067 Manganese containing catalase Trad_0728 PF08240 Alcohol dehydrogenase GroES-like domain Trad_0728 PF13823 Alcohol dehydrogenase GroES-associated Trad_0728 PF00107 Zinc-binding dehydrogenase Trad_0729 PF00196 Bacterial regulatory proteins, luxR family Trad_0729 PF00072 Response regulator receiver domain Trad_0732 PF01747 ATP-sulfurylase Trad_0732 PF14306 PUA-like domain Trad_0733 PF00459 Inositol monophosphatase family Trad_0734 PF00534 Glycosyl transferases group 1 Trad_0734 PF13439 Glycosyltransferase Family 4 Trad_0735 PF00534 Glycosyl transferases group 1 Trad_0736 PF00534 Glycosyl transferases group 1 Trad_0740 PF00709 Adenylosuccinate synthetase Trad_0741 PF06445 GyrI-like small molecule binding domain Trad_0741 PF13411 MerR HTH family regulatory protein Trad_0742 PF00285 Citrate synthase, C-terminal domain Trad_0743 PF13194 Domain of unknown function (DUF4010) Trad_0746 PF00676 Dehydrogenase E1 component Trad_0747 PF02780 Transketolase, C-terminal domain Trad_0747 PF02779 Transketolase, pyrimidine binding domain Trad_0748 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Trad_0748 PF02817 e3 binding domain Trad_0748 PF00364 Biotin-requiring enzyme Trad_0749 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Trad_0749 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Trad_0749 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trad_0749 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Trad_0753 PF00005 ABC transporter Trad_0753 PF02687 FtsX-like permease family Trad_0753 PF12704 MacB-like periplasmic core domain Trad_0754 PF02163 Peptidase family M50 Trad_0756 PF01966 HD domain Trad_0756 PF01743 Poly A polymerase head domain Trad_0756 PF12627 Probable RNA and SrmB- binding site of polymerase A Trad_0757 PF00588 SpoU rRNA Methylase family Trad_0758 PF05343 M42 glutamyl aminopeptidase Trad_0759 PF00583 Acetyltransferase (GNAT) family Trad_0761 PF00633 Helix-hairpin-helix motif Trad_0761 PF00730 HhH-GPD superfamily base excision DNA repair protein Trad_0763 PF00482 Type II secretion system (T2SS), protein F Trad_0764 PF00990 Diguanylate cyclase, GGDEF domain Trad_0764 PF03707 Bacterial signalling protein N terminal repeat Trad_0764 PF00563 EAL domain Trad_0766 PF00294 pfkB family carbohydrate kinase Trad_0767 PF01297 Zinc-uptake complex component A periplasmic Trad_0768 PF00005 ABC transporter Trad_0769 PF00950 ABC 3 transport family Trad_0773 PF00664 ABC transporter transmembrane region Trad_0773 PF00005 ABC transporter Trad_0774 PF00664 ABC transporter transmembrane region Trad_0774 PF00005 ABC transporter Trad_0777 PF17200 Single Cache domain 2 Trad_0777 PF07730 Histidine kinase Trad_0779 PF01197 Ribosomal protein L31 Trad_0780 PF00689 Cation transporting ATPase, C-terminus Trad_0780 PF00690 Cation transporter/ATPase, N-terminus Trad_0781 PF01773 Na+ dependent nucleoside transporter N-terminus Trad_0781 PF07662 Na+ dependent nucleoside transporter C-terminus Trad_0781 PF07670 Nucleoside recognition Trad_0782 PF02657 Fe-S metabolism associated domain Trad_0783 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Trad_0784 PF02224 Cytidylate kinase Trad_0785 PF01513 ATP-NAD kinase Trad_0786 PF00990 Diguanylate cyclase, GGDEF domain Trad_0786 PF07694 5TMR of 5TMR-LYT Trad_0788 PF02684 Lipid-A-disaccharide synthetase Trad_0791 PF00486 Transcriptional regulatory protein, C terminal Trad_0791 PF00072 Response regulator receiver domain Trad_0792 PF01156 Inosine-uridine preferring nucleoside hydrolase Trad_0798 PF00578 AhpC/TSA family Trad_0799 PF08241 Methyltransferase domain Trad_0800 PF02583 Metal-sensitive transcriptional repressor Trad_0808 PF00005 ABC transporter Trad_0808 PF02687 FtsX-like permease family Trad_0808 PF12704 MacB-like periplasmic core domain Trad_0809 PF00793 DAHP synthetase I family Trad_0811 PF07690 Major Facilitator Superfamily Trad_0812 PF01043 SecA preprotein cross-linking domain Trad_0812 PF07517 SecA DEAD-like domain Trad_0812 PF07516 SecA Wing and Scaffold domain Trad_0814 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Trad_0817 PF02734 DAK2 domain Trad_0817 PF13684 Dihydroxyacetone kinase family Trad_0821 PF01967 MoaC family Trad_0822 PF01416 tRNA pseudouridine synthase Trad_0823 PF01569 PAP2 superfamily Trad_0825 PF00005 ABC transporter Trad_0827 PF01841 Transglutaminase-like superfamily Trad_0827 PF08379 Bacterial transglutaminase-like N-terminal region Trad_0828 PF00939 Sodium:sulfate symporter transmembrane region Trad_0830 PF01624 MutS domain I Trad_0830 PF05188 MutS domain II Trad_0830 PF05192 MutS domain III Trad_0830 PF05190 MutS family domain IV Trad_0830 PF00488 MutS domain V Trad_0831 PF08676 MutL C terminal dimerisation domain Trad_0831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_0831 PF01119 DNA mismatch repair protein, C-terminal domain Trad_0835 PF01791 DeoC/LacD family aldolase Trad_0837 PF01850 PIN domain Trad_0838 PF13302 Acetyltransferase (GNAT) domain Trad_0840 PF00171 Aldehyde dehydrogenase family Trad_0841 PF05544 Proline racemase Trad_0842 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0842 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0843 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0843 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0844 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0845 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0846 PF01547 Bacterial extracellular solute-binding protein Trad_0847 PF01593 Flavin containing amine oxidoreductase Trad_0848 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Trad_0848 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_0848 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_0849 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0849 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0851 PF02308 MgtC family Trad_0852 PF00571 CBS domain Trad_0852 PF03448 MgtE intracellular N domain Trad_0852 PF01769 Divalent cation transporter Trad_0853 PF00288 GHMP kinases N terminal domain Trad_0853 PF08544 GHMP kinases C terminal Trad_0853 PF10509 Galactokinase galactose-binding signature Trad_0854 PF07683 Cobalamin synthesis protein cobW C-terminal domain Trad_0854 PF02492 CobW/HypB/UreG, nucleotide-binding domain Trad_0856 PF00830 Ribosomal L28 family Trad_0858 PF00005 ABC transporter Trad_0859 PF00950 ABC 3 transport family Trad_0863 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Trad_0864 PF02545 Maf-like protein Trad_0865 PF01649 Ribosomal protein S20 Trad_0867 PF00174 Oxidoreductase molybdopterin binding domain Trad_0868 PF00588 SpoU rRNA Methylase family Trad_0869 PF02557 D-alanyl-D-alanine carboxypeptidase Trad_0871 PF03150 Di-haem cytochrome c peroxidase Trad_0871 PF00034 Cytochrome c Trad_0880 PF01895 PhoU domain Trad_0881 PF00072 Response regulator receiver domain Trad_0881 PF00486 Transcriptional regulatory protein, C terminal Trad_0882 PF13426 PAS domain Trad_0882 PF00512 His Kinase A (phospho-acceptor) domain Trad_0882 PF00672 HAMP domain Trad_0882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_0886 PF03458 UPF0126 domain Trad_0887 PF00291 Pyridoxal-phosphate dependent enzyme Trad_0893 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_0893 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_0897 PF02779 Transketolase, pyrimidine binding domain Trad_0897 PF16078 2-oxoglutarate dehydrogenase N-terminus Trad_0897 PF00676 Dehydrogenase E1 component Trad_0897 PF16870 2-oxoglutarate dehydrogenase C-terminal Trad_0898 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Trad_0898 PF00364 Biotin-requiring enzyme Trad_0898 PF02817 e3 binding domain Trad_0899 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_0899 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Trad_0900 PF01569 PAP2 superfamily Trad_0902 PF14824 Sirohaem biosynthesis protein central Trad_0902 PF10414 Sirohaem synthase dimerisation region Trad_0902 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Trad_0904 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Trad_0904 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Trad_0905 PF01507 Phosphoadenosine phosphosulfate reductase family Trad_0906 PF07995 Glucose / Sorbosone dehydrogenase Trad_0907 PF01704 UTP--glucose-1-phosphate uridylyltransferase Trad_0908 PF04055 Radical SAM superfamily Trad_0909 PF02621 Menaquinone biosynthesis Trad_0911 PF01625 Peptide methionine sulfoxide reductase Trad_0912 PF00221 Aromatic amino acid lyase Trad_0914 PF01979 Amidohydrolase family Trad_0915 PF00491 Arginase family Trad_0916 PF01175 Urocanase Rossmann-like domain Trad_0916 PF17391 Urocanase N-terminal domain Trad_0916 PF17392 Urocanase C-terminal domain Trad_0918 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_0918 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Trad_0920 PF01180 Dihydroorotate dehydrogenase Trad_0921 PF01979 Amidohydrolase family Trad_0922 PF00005 ABC transporter Trad_0924 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0925 PF09084 NMT1/THI5 like Trad_0927 PF01676 Metalloenzyme superfamily Trad_0927 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Trad_0941 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0941 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_0942 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0943 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_0944 PF07687 Peptidase dimerisation domain Trad_0944 PF01546 Peptidase family M20/M25/M40 Trad_0945 PF01546 Peptidase family M20/M25/M40 Trad_0945 PF07687 Peptidase dimerisation domain Trad_0946 PF00356 Bacterial regulatory proteins, lacI family Trad_0947 PF01547 Bacterial extracellular solute-binding protein Trad_0948 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0949 PF00528 Binding-protein-dependent transport system inner membrane component Trad_0951 PF00534 Glycosyl transferases group 1 Trad_0952 PF00326 Prolyl oligopeptidase family Trad_0962 PF01872 RibD C-terminal domain Trad_0967 PF02311 AraC-like ligand binding domain Trad_0967 PF12833 Helix-turn-helix domain Trad_0969 PF02075 Crossover junction endodeoxyribonuclease RuvC Trad_0970 PF03951 Glutamine synthetase, beta-Grasp domain Trad_0970 PF00120 Glutamine synthetase, catalytic domain Trad_0972 PF02653 Branched-chain amino acid transport system / permease component Trad_0973 PF11862 Domain of unknown function (DUF3382) Trad_0973 PF02653 Branched-chain amino acid transport system / permease component Trad_0974 PF12399 Branched-chain amino acid ATP-binding cassette transporter Trad_0974 PF00005 ABC transporter Trad_0975 PF00005 ABC transporter Trad_0976 PF00106 short chain dehydrogenase Trad_0977 PF00696 Amino acid kinase family Trad_0977 PF13840 ACT domain Trad_0977 PF01842 ACT domain Trad_0978 PF02469 Fasciclin domain Trad_0982 PF02441 Flavoprotein Trad_0983 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Trad_0984 PF00288 GHMP kinases N terminal domain Trad_0984 PF08544 GHMP kinases C terminal Trad_0988 PF00920 Dehydratase family Trad_0989 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Trad_0989 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Trad_0991 PF08220 DeoR-like helix-turn-helix domain Trad_0991 PF00455 DeoR C terminal sensor domain Trad_0992 PF13407 Periplasmic binding protein domain Trad_0994 PF02653 Branched-chain amino acid transport system / permease component Trad_0995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_0995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_0996 PF07385 D-lyxose isomerase Trad_0997 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_0997 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_0999 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Trad_1001 PF00708 Acylphosphatase Trad_1002 PF00218 Indole-3-glycerol phosphate synthase Trad_1003 PF00106 short chain dehydrogenase Trad_1004 PF05193 Peptidase M16 inactive domain Trad_1004 PF00675 Insulinase (Peptidase family M16) Trad_1005 PF00675 Insulinase (Peptidase family M16) Trad_1005 PF05193 Peptidase M16 inactive domain Trad_1009 PF07669 Eco57I restriction-modification methylase Trad_1009 PF12950 TaqI-like C-terminal specificity domain Trad_1011 PF13291 ACT domain Trad_1011 PF04607 Region found in RelA / SpoT proteins Trad_1011 PF02824 TGS domain Trad_1012 PF00005 ABC transporter Trad_1012 PF02687 FtsX-like permease family Trad_1012 PF12704 MacB-like periplasmic core domain Trad_1013 PF00005 ABC transporter Trad_1013 PF13732 Domain of unknown function (DUF4162) Trad_1016 PF02374 Anion-transporting ATPase Trad_1018 PF02554 Carbon starvation protein CstA Trad_1018 PF13722 5TM C-terminal transporter carbon starvation CstA Trad_1020 PF03714 Bacterial pullanase-associated domain Trad_1020 PF18494 Pullulanase Ins domain Trad_1020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trad_1020 PF17967 Pullulanase N2 domain Trad_1020 PF11852 Domain of unknown function (DUF3372) Trad_1021 PF00034 Cytochrome c Trad_1026 PF13247 4Fe-4S dicluster domain Trad_1026 PF00037 4Fe-4S binding domain Trad_1028 PF03481 Putative GTP-binding controlling metal-binding Trad_1028 PF01300 Telomere recombination Trad_1029 PF00731 AIR carboxylase Trad_1030 PF02222 ATP-grasp domain Trad_1030 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Trad_1031 PF00128 Alpha amylase, catalytic domain Trad_1033 PF00164 Ribosomal protein S12/S23 Trad_1034 PF00177 Ribosomal protein S7p/S5e Trad_1035 PF14492 Elongation Factor G, domain II Trad_1035 PF00679 Elongation factor G C-terminus Trad_1035 PF03764 Elongation factor G, domain IV Trad_1035 PF03144 Elongation factor Tu domain 2 Trad_1035 PF00009 Elongation factor Tu GTP binding domain Trad_1036 PF03144 Elongation factor Tu domain 2 Trad_1036 PF03143 Elongation factor Tu C-terminal domain Trad_1036 PF00009 Elongation factor Tu GTP binding domain Trad_1037 PF00338 Ribosomal protein S10p/S20e Trad_1038 PF00297 Ribosomal protein L3 Trad_1039 PF00573 Ribosomal protein L4/L1 family Trad_1040 PF00276 Ribosomal protein L23 Trad_1041 PF00181 Ribosomal Proteins L2, RNA binding domain Trad_1041 PF03947 Ribosomal Proteins L2, C-terminal domain Trad_1042 PF00203 Ribosomal protein S19 Trad_1043 PF00237 Ribosomal protein L22p/L17e Trad_1044 PF00189 Ribosomal protein S3, C-terminal domain Trad_1044 PF07650 KH domain Trad_1045 PF00252 Ribosomal protein L16p/L10e Trad_1046 PF00831 Ribosomal L29 protein Trad_1047 PF00366 Ribosomal protein S17 Trad_1048 PF00238 Ribosomal protein L14p/L23e Trad_1049 PF00467 KOW motif Trad_1049 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Trad_1050 PF00281 Ribosomal protein L5 Trad_1050 PF00673 ribosomal L5P family C-terminus Trad_1051 PF00253 Ribosomal protein S14p/S29e Trad_1052 PF00410 Ribosomal protein S8 Trad_1053 PF00347 Ribosomal protein L6 Trad_1054 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Trad_1055 PF03719 Ribosomal protein S5, C-terminal domain Trad_1055 PF00333 Ribosomal protein S5, N-terminal domain Trad_1056 PF00327 Ribosomal protein L30p/L7e Trad_1057 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Trad_1058 PF00344 SecY translocase Trad_1060 PF00557 Metallopeptidase family M24 Trad_1061 PF01176 Translation initiation factor 1A / IF-1 Trad_1062 PF00444 Ribosomal protein L36 Trad_1063 PF00416 Ribosomal protein S13/S18 Trad_1064 PF00411 Ribosomal protein S11 Trad_1065 PF01479 S4 domain Trad_1065 PF00163 Ribosomal protein S4/S9 N-terminal domain Trad_1066 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Trad_1066 PF01000 RNA polymerase Rpb3/RpoA insert domain Trad_1066 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Trad_1067 PF01196 Ribosomal protein L17 Trad_1069 PF01676 Metalloenzyme superfamily Trad_1070 PF00005 ABC transporter Trad_1071 PF00005 ABC transporter Trad_1071 PF12704 MacB-like periplasmic core domain Trad_1071 PF02687 FtsX-like permease family Trad_1075 PF00196 Bacterial regulatory proteins, luxR family Trad_1075 PF00072 Response regulator receiver domain Trad_1076 PF14437 MafB19-like deaminase Trad_1076 PF01171 PP-loop family Trad_1076 PF11734 TilS substrate C-terminal domain Trad_1077 PF01521 Iron-sulphur cluster biosynthesis Trad_1078 PF02347 Glycine cleavage system P-protein Trad_1079 PF02347 Glycine cleavage system P-protein Trad_1080 PF01597 Glycine cleavage H-protein Trad_1081 PF08669 Glycine cleavage T-protein C-terminal barrel domain Trad_1081 PF01571 Aminomethyltransferase folate-binding domain Trad_1082 PF00025 ADP-ribosylation factor family Trad_1084 PF03477 ATP cone domain Trad_1086 PF17848 Acetyl-coA carboxylase zinc finger domain Trad_1086 PF01039 Carboxyl transferase domain Trad_1087 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Trad_1088 PF00834 Ribulose-phosphate 3 epimerase family Trad_1090 PF00581 Rhodanese-like domain Trad_1092 PF02082 Transcriptional regulator Trad_1093 PF00296 Luciferase-like monooxygenase Trad_1097 PF00202 Aminotransferase class-III Trad_1098 PF13419 Haloacid dehalogenase-like hydrolase Trad_1101 PF04445 Putative SAM-dependent methyltransferase Trad_1103 PF17126 RsmF rRNA methyltransferase first C-terminal domain Trad_1103 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Trad_1103 PF01189 16S rRNA methyltransferase RsmB/F Trad_1104 PF12320 Type 5 capsule protein repressor C-terminal domain Trad_1104 PF00149 Calcineurin-like phosphoesterase Trad_1105 PF13476 AAA domain Trad_1108 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_1110 PF01734 Patatin-like phospholipase Trad_1112 PF00348 Polyprenyl synthetase Trad_1114 PF01132 Elongation factor P (EF-P) OB domain Trad_1114 PF09285 Elongation factor P, C-terminal Trad_1114 PF08207 Elongation factor P (EF-P) KOW-like domain Trad_1115 PF00364 Biotin-requiring enzyme Trad_1116 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Trad_1116 PF02785 Biotin carboxylase C-terminal domain Trad_1116 PF00289 Biotin carboxylase, N-terminal domain Trad_1117 PF03780 Asp23 family, cell envelope-related function Trad_1118 PF01029 NusB family Trad_1119 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Trad_1119 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Trad_1120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trad_1121 PF00072 Response regulator receiver domain Trad_1122 PF02073 Thermophilic metalloprotease (M29) Trad_1123 PF03061 Thioesterase superfamily Trad_1125 PF00248 Aldo/keto reductase family Trad_1129 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_1132 PF01047 MarR family Trad_1133 PF07681 DoxX Trad_1134 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Trad_1135 PF00850 Histone deacetylase domain Trad_1140 PF13407 Periplasmic binding protein domain Trad_1141 PF02653 Branched-chain amino acid transport system / permease component Trad_1142 PF02653 Branched-chain amino acid transport system / permease component Trad_1143 PF00005 ABC transporter Trad_1145 PF05138 Phenylacetic acid catabolic protein Trad_1148 PF01883 Iron-sulfur cluster assembly protein Trad_1150 PF01594 AI-2E family transporter Trad_1151 PF01032 FecCD transport family Trad_1152 PF01032 FecCD transport family Trad_1153 PF01497 Periplasmic binding protein Trad_1156 PF00005 ABC transporter Trad_1157 PF01032 FecCD transport family Trad_1158 PF01497 Periplasmic binding protein Trad_1162 PF00881 Nitroreductase family Trad_1163 PF01497 Periplasmic binding protein Trad_1165 PF01425 Amidase Trad_1168 PF00005 ABC transporter Trad_1175 PF00873 AcrB/AcrD/AcrF family Trad_1181 PF10502 Signal peptidase, peptidase S26 Trad_1182 PF01734 Patatin-like phospholipase Trad_1184 PF00595 PDZ domain Trad_1186 PF10672 S-adenosylmethionine-dependent methyltransferase Trad_1186 PF17785 PUA-like domain Trad_1190 PF12631 MnmE helical domain Trad_1190 PF01926 50S ribosome-binding GTPase Trad_1190 PF10396 GTP-binding protein TrmE N-terminus Trad_1191 PF00202 Aminotransferase class-III Trad_1198 PF00176 SNF2 family N-terminal domain Trad_1198 PF00271 Helicase conserved C-terminal domain Trad_1200 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1201 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1202 PF13416 Bacterial extracellular solute-binding protein Trad_1204 PF01546 Peptidase family M20/M25/M40 Trad_1205 PF02469 Fasciclin domain Trad_1207 PF01209 ubiE/COQ5 methyltransferase family Trad_1209 PF13932 GidA associated domain Trad_1209 PF01134 Glucose inhibited division protein A Trad_1214 PF02621 Menaquinone biosynthesis Trad_1215 PF05198 Translation initiation factor IF-3, N-terminal domain Trad_1215 PF00707 Translation initiation factor IF-3, C-terminal domain Trad_1216 PF01632 Ribosomal protein L35 Trad_1217 PF00453 Ribosomal protein L20 Trad_1220 PF02401 LytB protein Trad_1223 PF00465 Iron-containing alcohol dehydrogenase Trad_1224 PF01116 Fructose-bisphosphate aldolase class-II Trad_1225 PF00294 pfkB family carbohydrate kinase Trad_1226 PF00753 Metallo-beta-lactamase superfamily Trad_1227 PF00171 Aldehyde dehydrogenase family Trad_1228 PF04962 KduI/IolB family Trad_1229 PF01261 Xylose isomerase-like TIM barrel Trad_1231 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1231 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1232 PF00205 Thiamine pyrophosphate enzyme, central domain Trad_1232 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trad_1232 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trad_1233 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1233 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1234 PF00005 ABC transporter Trad_1235 PF02653 Branched-chain amino acid transport system / permease component Trad_1237 PF00455 DeoR C terminal sensor domain Trad_1237 PF08220 DeoR-like helix-turn-helix domain Trad_1240 PF00484 Carbonic anhydrase Trad_1241 PF00916 Sulfate permease family Trad_1241 PF01740 STAS domain Trad_1242 PF00753 Metallo-beta-lactamase superfamily Trad_1243 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_1245 PF03466 LysR substrate binding domain Trad_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trad_1247 PF00005 ABC transporter Trad_1248 PF02653 Branched-chain amino acid transport system / permease component Trad_1249 PF13407 Periplasmic binding protein domain Trad_1251 PF01344 Kelch motif Trad_1256 PF13191 AAA ATPase domain Trad_1256 PF00069 Protein kinase domain Trad_1258 PF02629 CoA binding domain Trad_1258 PF00549 CoA-ligase Trad_1259 PF00549 CoA-ligase Trad_1259 PF08442 ATP-grasp domain Trad_1260 PF16347 Domain of unknown function (DUF4976) Trad_1260 PF00884 Sulfatase Trad_1262 PF01790 Prolipoprotein diacylglyceryl transferase Trad_1263 PF12804 MobA-like NTP transferase domain Trad_1263 PF14602 Hexapeptide repeat of succinyl-transferase Trad_1263 PF00132 Bacterial transferase hexapeptide (six repeats) Trad_1264 PF00884 Sulfatase Trad_1265 PF00117 Glutamine amidotransferase class-I Trad_1265 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Trad_1266 PF01594 AI-2E family transporter Trad_1269 PF01594 AI-2E family transporter Trad_1270 PF02397 Bacterial sugar transferase Trad_1272 PF05922 Peptidase inhibitor I9 Trad_1272 PF00082 Subtilase family Trad_1273 PF02580 D-Tyr-tRNA(Tyr) deacylase Trad_1275 PF03167 Uracil DNA glycosylase superfamily Trad_1278 PF01116 Fructose-bisphosphate aldolase class-II Trad_1282 PF00448 SRP54-type protein, GTPase domain Trad_1282 PF02881 SRP54-type protein, helical bundle domain Trad_1283 PF00749 tRNA synthetases class I (E and Q), catalytic domain Trad_1285 PF02673 Bacitracin resistance protein BacA Trad_1286 PF00380 Ribosomal protein S9/S16 Trad_1287 PF00572 Ribosomal protein L13 Trad_1290 PF00027 Cyclic nucleotide-binding domain Trad_1290 PF13545 Crp-like helix-turn-helix domain Trad_1291 PF00005 ABC transporter Trad_1292 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_1293 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1295 PF02913 FAD linked oxidases, C-terminal domain Trad_1295 PF01565 FAD binding domain Trad_1296 PF01979 Amidohydrolase family Trad_1299 PF12848 ABC transporter Trad_1299 PF00005 ABC transporter Trad_1308 PF00679 Elongation factor G C-terminus Trad_1308 PF06421 GTP-binding protein LepA C-terminus Trad_1308 PF03144 Elongation factor Tu domain 2 Trad_1308 PF00009 Elongation factor Tu GTP binding domain Trad_1313 PF04079 Segregation and condensation complex subunit ScpB Trad_1315 PF08671 Anti-repressor SinI Trad_1315 PF01381 Helix-turn-helix Trad_1317 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1318 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_1319 PF00557 Metallopeptidase family M24 Trad_1319 PF01321 Creatinase/Prolidase N-terminal domain Trad_1322 PF00248 Aldo/keto reductase family Trad_1323 PF00005 ABC transporter Trad_1326 PF01220 Dehydroquinase class II Trad_1327 PF01761 3-dehydroquinate synthase Trad_1328 PF01202 Shikimate kinase Trad_1329 PF01264 Chorismate synthase Trad_1330 PF03958 Bacterial type II/III secretion system short domain Trad_1330 PF00263 Bacterial type II and III secretion system protein Trad_1336 PF06480 FtsH Extracellular Trad_1336 PF00004 ATPase family associated with various cellular activities (AAA) Trad_1336 PF17862 AAA+ lid domain Trad_1336 PF01434 Peptidase family M41 Trad_1337 PF03796 DnaB-like helicase C terminal domain Trad_1337 PF00772 DnaB-like helicase N terminal domain Trad_1338 PF02660 Glycerol-3-phosphate acyltransferase Trad_1341 PF04452 RNA methyltransferase Trad_1343 PF02355 Protein export membrane protein Trad_1343 PF07549 SecD/SecF GG Motif Trad_1345 PF04760 Translation initiation factor IF-2, N-terminal region Trad_1345 PF11987 Translation-initiation factor 2 Trad_1345 PF00009 Elongation factor Tu GTP binding domain Trad_1347 PF00575 S1 RNA binding domain Trad_1347 PF08529 NusA N-terminal domain Trad_1347 PF13184 NusA-like KH domain Trad_1348 PF02576 RimP N-terminal domain Trad_1348 PF17384 RimP C-terminal SH3 domain Trad_1349 PF00266 Aminotransferase class-V Trad_1352 PF01409 tRNA synthetases class II core domain (F) Trad_1352 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Trad_1353 PF01588 Putative tRNA binding domain Trad_1353 PF03147 Ferredoxin-fold anticodon binding domain Trad_1353 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Trad_1353 PF03483 B3/4 domain Trad_1353 PF03484 tRNA synthetase B5 domain Trad_1354 PF01380 SIS domain Trad_1355 PF00815 Histidinol dehydrogenase Trad_1359 PF03572 Peptidase family S41 Trad_1359 PF13180 PDZ domain Trad_1360 PF01293 Phosphoenolpyruvate carboxykinase Trad_1364 PF00480 ROK family Trad_1369 PF00378 Enoyl-CoA hydratase/isomerase Trad_1370 PF07969 Amidohydrolase family Trad_1371 PF00171 Aldehyde dehydrogenase family Trad_1373 PF00204 DNA gyrase B Trad_1373 PF00986 DNA gyrase B subunit, carboxyl terminus Trad_1373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_1373 PF01751 Toprim domain Trad_1374 PF04493 Endonuclease V Trad_1376 PF03853 YjeF-related protein N-terminus Trad_1377 PF01709 Transcriptional regulator Trad_1380 PF10079 Bacillithiol biosynthesis BshC Trad_1381 PF00571 CBS domain Trad_1381 PF00478 IMP dehydrogenase / GMP reductase domain Trad_1383 PF02033 Ribosome-binding factor A Trad_1385 PF00730 HhH-GPD superfamily base excision DNA repair protein Trad_1385 PF00633 Helix-hairpin-helix motif Trad_1385 PF14815 NUDIX domain Trad_1389 PF00330 Aconitase family (aconitate hydratase) Trad_1390 PF00694 Aconitase C-terminal domain Trad_1391 PF08271 TFIIB zinc-binding Trad_1392 PF08443 RimK-like ATP-grasp domain Trad_1395 PF01118 Semialdehyde dehydrogenase, NAD binding domain Trad_1396 PF01979 Amidohydrolase family Trad_1399 PF00696 Amino acid kinase family Trad_1400 PF00293 NUDIX domain Trad_1401 PF00202 Aminotransferase class-III Trad_1402 PF01850 PIN domain Trad_1404 PF01546 Peptidase family M20/M25/M40 Trad_1405 PF00781 Diacylglycerol kinase catalytic domain Trad_1406 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trad_1406 PF00378 Enoyl-CoA hydratase/isomerase Trad_1406 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Trad_1408 PF00226 DnaJ domain Trad_1408 PF01556 DnaJ C terminal domain Trad_1408 PF00684 DnaJ central domain Trad_1409 PF13411 MerR HTH family regulatory protein Trad_1410 PF07687 Peptidase dimerisation domain Trad_1410 PF01546 Peptidase family M20/M25/M40 Trad_1411 PF00491 Arginase family Trad_1413 PF01425 Amidase Trad_1414 PF00155 Aminotransferase class I and II Trad_1416 PF00005 ABC transporter Trad_1416 PF08402 TOBE domain Trad_1417 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1420 PF00128 Alpha amylase, catalytic domain Trad_1420 PF16657 Maltogenic Amylase, C-terminal domain Trad_1421 PF00128 Alpha amylase, catalytic domain Trad_1421 PF11896 Domain of unknown function (DUF3416) Trad_1422 PF08240 Alcohol dehydrogenase GroES-like domain Trad_1422 PF08659 KR domain Trad_1422 PF08990 Erythronolide synthase docking Trad_1422 PF16197 Ketoacyl-synthetase C-terminal extension Trad_1422 PF00698 Acyl transferase domain Trad_1422 PF00109 Beta-ketoacyl synthase, N-terminal domain Trad_1422 PF14765 Polyketide synthase dehydratase Trad_1422 PF02801 Beta-ketoacyl synthase, C-terminal domain Trad_1422 PF00550 Phosphopantetheine attachment site Trad_1426 PF02909 Tetracyclin repressor-like, C-terminal domain Trad_1426 PF00440 Bacterial regulatory proteins, tetR family Trad_1431 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Trad_1432 PF01381 Helix-turn-helix Trad_1434 PF02567 Phenazine biosynthesis-like protein Trad_1435 PF01479 S4 domain Trad_1435 PF00849 RNA pseudouridylate synthase Trad_1436 PF00156 Phosphoribosyl transferase domain Trad_1437 PF01551 Peptidase family M23 Trad_1437 PF08525 Opacity-associated protein A N-terminal motif Trad_1437 PF01476 LysM domain Trad_1441 PF00150 Cellulase (glycosyl hydrolase family 5) Trad_1441 PF00553 Cellulose binding domain Trad_1442 PF00128 Alpha amylase, catalytic domain Trad_1444 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1445 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1453 PF00579 tRNA synthetases class I (W and Y) Trad_1456 PF00156 Phosphoribosyl transferase domain Trad_1458 PF00563 EAL domain Trad_1458 PF12792 CSS motif domain associated with EAL Trad_1459 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_1459 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Trad_1460 PF14759 Reductase C-terminal Trad_1460 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_1462 PF08245 Mur ligase middle domain Trad_1462 PF02875 Mur ligase family, glutamate ligase domain Trad_1463 PF00809 Pterin binding enzyme Trad_1465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Trad_1468 PF00395 S-layer homology domain Trad_1470 PF00004 ATPase family associated with various cellular activities (AAA) Trad_1470 PF16193 AAA C-terminal domain Trad_1470 PF12002 MgsA AAA+ ATPase C terminal Trad_1471 PF00871 Acetokinase family Trad_1474 PF00480 ROK family Trad_1476 PF00990 Diguanylate cyclase, GGDEF domain Trad_1476 PF03707 Bacterial signalling protein N terminal repeat Trad_1476 PF00563 EAL domain Trad_1478 PF01425 Amidase Trad_1481 PF00561 alpha/beta hydrolase fold Trad_1483 PF18407 GCN5-related N-acetyltransferase like domain Trad_1483 PF13344 Haloacid dehalogenase-like hydrolase Trad_1484 PF13407 Periplasmic binding protein domain Trad_1485 PF00005 ABC transporter Trad_1486 PF02653 Branched-chain amino acid transport system / permease component Trad_1487 PF00356 Bacterial regulatory proteins, lacI family Trad_1488 PF00596 Class II Aldolase and Adducin N-terminal domain Trad_1489 PF02610 L-arabinose isomerase Trad_1489 PF11762 L-arabinose isomerase C-terminal domain Trad_1491 PF00672 HAMP domain Trad_1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_1491 PF07730 Histidine kinase Trad_1492 PF00196 Bacterial regulatory proteins, luxR family Trad_1492 PF00072 Response regulator receiver domain Trad_1495 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Trad_1495 PF09125 Cytochrome C oxidase subunit II, transmembrane Trad_1496 PF00115 Cytochrome C and Quinol oxidase polypeptide I Trad_1498 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trad_1498 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Trad_1499 PF02652 L-lactate permease Trad_1500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Trad_1500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Trad_1502 PF09349 OHCU decarboxylase Trad_1502 PF01014 Uricase Trad_1503 PF01014 Uricase Trad_1503 PF09349 OHCU decarboxylase Trad_1504 PF00576 HIUase/Transthyretin family Trad_1505 PF01979 Amidohydrolase family Trad_1506 PF07883 Cupin domain Trad_1506 PF05899 Protein of unknown function (DUF861) Trad_1507 PF07687 Peptidase dimerisation domain Trad_1507 PF01546 Peptidase family M20/M25/M40 Trad_1510 PF00941 FAD binding domain in molybdopterin dehydrogenase Trad_1510 PF03450 CO dehydrogenase flavoprotein C-terminal domain Trad_1511 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Trad_1511 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Trad_1513 PF01209 ubiE/COQ5 methyltransferase family Trad_1515 PF00069 Protein kinase domain Trad_1515 PF03793 PASTA domain Trad_1523 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Trad_1523 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Trad_1524 PF03707 Bacterial signalling protein N terminal repeat Trad_1524 PF00563 EAL domain Trad_1524 PF00990 Diguanylate cyclase, GGDEF domain Trad_1525 PF02899 Phage integrase, N-terminal SAM-like domain Trad_1525 PF00589 Phage integrase family Trad_1526 PF03746 LamB/YcsF family Trad_1527 PF02682 Carboxyltransferase domain, subdomain C and D Trad_1530 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1531 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1533 PF12857 TOBE-like domain Trad_1533 PF00005 ABC transporter Trad_1534 PF01547 Bacterial extracellular solute-binding protein Trad_1536 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1538 PF00171 Aldehyde dehydrogenase family Trad_1539 PF08240 Alcohol dehydrogenase GroES-like domain Trad_1539 PF00107 Zinc-binding dehydrogenase Trad_1540 PF01274 Malate synthase Trad_1541 PF00463 Isocitrate lyase family Trad_1544 PF00196 Bacterial regulatory proteins, luxR family Trad_1544 PF00072 Response regulator receiver domain Trad_1546 PF02463 RecF/RecN/SMC N terminal domain Trad_1546 PF06470 SMC proteins Flexible Hinge Domain Trad_1553 PF00156 Phosphoribosyl transferase domain Trad_1554 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Trad_1554 PF00586 AIR synthase related protein, N-terminal domain Trad_1554 PF02769 AIR synthase related protein, C-terminal domain Trad_1556 PF00155 Aminotransferase class I and II Trad_1559 PF01370 NAD dependent epimerase/dehydratase family Trad_1560 PF03033 Glycosyltransferase family 28 N-terminal domain Trad_1560 PF04101 Glycosyltransferase family 28 C-terminal domain Trad_1561 PF03275 UDP-galactopyranose mutase Trad_1563 PF00196 Bacterial regulatory proteins, luxR family Trad_1563 PF00072 Response regulator receiver domain Trad_1565 PF02687 FtsX-like permease family Trad_1565 PF12704 MacB-like periplasmic core domain Trad_1566 PF12704 MacB-like periplasmic core domain Trad_1566 PF00005 ABC transporter Trad_1566 PF02687 FtsX-like permease family Trad_1567 PF03176 MMPL family Trad_1568 PF01565 FAD binding domain Trad_1568 PF02913 FAD linked oxidases, C-terminal domain Trad_1569 PF01565 FAD binding domain Trad_1570 PF02754 Cysteine-rich domain Trad_1570 PF13183 4Fe-4S dicluster domain Trad_1571 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1572 PF00005 ABC transporter Trad_1572 PF00571 CBS domain Trad_1573 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1574 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Trad_1575 PF00378 Enoyl-CoA hydratase/isomerase Trad_1576 PF01820 D-ala D-ala ligase N-terminus Trad_1576 PF07478 D-ala D-ala ligase C-terminus Trad_1579 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Trad_1580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Trad_1582 PF00403 Heavy-metal-associated domain Trad_1583 PF01022 Bacterial regulatory protein, arsR family Trad_1586 PF01668 SmpB protein Trad_1587 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Trad_1587 PF00271 Helicase conserved C-terminal domain Trad_1587 PF18074 Primosomal protein N C-terminal domain Trad_1587 PF00270 DEAD/DEAH box helicase Trad_1588 PF02769 AIR synthase related protein, C-terminal domain Trad_1588 PF00586 AIR synthase related protein, N-terminal domain Trad_1589 PF00512 His Kinase A (phospho-acceptor) domain Trad_1589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_1589 PF00672 HAMP domain Trad_1590 PF00486 Transcriptional regulatory protein, C terminal Trad_1590 PF00072 Response regulator receiver domain Trad_1591 PF02664 S-Ribosylhomocysteinase (LuxS) Trad_1596 PF12826 Helix-hairpin-helix motif Trad_1596 PF03120 NAD-dependent DNA ligase OB-fold domain Trad_1596 PF01653 NAD-dependent DNA ligase adenylation domain Trad_1596 PF00533 BRCA1 C Terminus (BRCT) domain Trad_1597 PF02608 ABC transporter substrate-binding protein PnrA-like Trad_1598 PF02381 MraZ protein, putative antitoxin-like Trad_1599 PF01795 MraW methylase family Trad_1601 PF00905 Penicillin binding protein transpeptidase domain Trad_1601 PF03717 Penicillin-binding Protein dimerisation domain Trad_1602 PF08245 Mur ligase middle domain Trad_1602 PF02875 Mur ligase family, glutamate ligase domain Trad_1602 PF01225 Mur ligase family, catalytic domain Trad_1603 PF00953 Glycosyl transferase family 4 Trad_1604 PF02875 Mur ligase family, glutamate ligase domain Trad_1604 PF08245 Mur ligase middle domain Trad_1605 PF01098 Cell cycle protein Trad_1606 PF04101 Glycosyltransferase family 28 C-terminal domain Trad_1606 PF03033 Glycosyltransferase family 28 N-terminal domain Trad_1607 PF01225 Mur ligase family, catalytic domain Trad_1607 PF02875 Mur ligase family, glutamate ligase domain Trad_1607 PF08245 Mur ligase middle domain Trad_1608 PF01565 FAD binding domain Trad_1608 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Trad_1609 PF03799 Cell division protein FtsQ Trad_1609 PF08478 POTRA domain, FtsQ-type Trad_1610 PF02491 SHS2 domain inserted in FTSA Trad_1611 PF12327 FtsZ family, C-terminal domain Trad_1611 PF00091 Tubulin/FtsZ family, GTPase domain Trad_1612 PF00293 NUDIX domain Trad_1613 PF01687 Riboflavin kinase Trad_1613 PF06574 FAD synthetase Trad_1614 PF08032 RNA 2'-O ribose methyltransferase substrate binding Trad_1614 PF00588 SpoU rRNA Methylase family Trad_1615 PF00326 Prolyl oligopeptidase family Trad_1615 PF07676 WD40-like Beta Propeller Repeat Trad_1616 PF13439 Glycosyltransferase Family 4 Trad_1616 PF00534 Glycosyl transferases group 1 Trad_1618 PF01894 Uncharacterised protein family UPF0047 Trad_1619 PF00485 Phosphoribulokinase / Uridine kinase family Trad_1621 PF00312 Ribosomal protein S15 Trad_1622 PF01138 3' exoribonuclease family, domain 1 Trad_1622 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Trad_1622 PF03725 3' exoribonuclease family, domain 2 Trad_1622 PF00575 S1 RNA binding domain Trad_1622 PF00013 KH domain Trad_1623 PF12706 Beta-lactamase superfamily domain Trad_1623 PF17770 Ribonuclease J C-terminal domain Trad_1623 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Trad_1625 PF00248 Aldo/keto reductase family Trad_1626 PF00248 Aldo/keto reductase family Trad_1627 PF00248 Aldo/keto reductase family Trad_1630 PF00293 NUDIX domain Trad_1633 PF00180 Isocitrate/isopropylmalate dehydrogenase Trad_1633 PF18324 Hypothetical protein TT1725 Trad_1635 PF01554 MatE Trad_1636 PF04228 Putative neutral zinc metallopeptidase Trad_1637 PF04041 beta-1,4-mannooligosaccharide phosphorylase Trad_1638 PF03129 Anticodon binding domain Trad_1638 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trad_1638 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trad_1638 PF02824 TGS domain Trad_1646 PF01205 Uncharacterized protein family UPF0029 Trad_1647 PF09190 DALR domain Trad_1647 PF01406 tRNA synthetases class I (C) catalytic domain Trad_1648 PF02481 DNA recombination-mediator protein A Trad_1648 PF17782 DprA winged helix domain Trad_1649 PF00128 Alpha amylase, catalytic domain Trad_1649 PF02903 Alpha amylase, N-terminal ig-like domain Trad_1650 PF04199 Putative cyclase Trad_1653 PF00037 4Fe-4S binding domain Trad_1658 PF01804 Penicillin amidase Trad_1660 PF09704 CRISPR-associated protein (Cas_Cas5) Trad_1672 PF01867 CRISPR associated protein Cas1 Trad_1673 PF09827 CRISPR associated protein Cas2 Trad_1675 PF00106 short chain dehydrogenase Trad_1680 PF03334 Na+/H+ antiporter subunit Trad_1682 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Trad_1682 PF00361 Proton-conducting membrane transporter Trad_1682 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Trad_1682 PF13244 Domain of unknown function (DUF4040) Trad_1683 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Trad_1684 PF00361 Proton-conducting membrane transporter Trad_1685 PF00361 Proton-conducting membrane transporter Trad_1686 PF00361 Proton-conducting membrane transporter Trad_1689 PF01048 Phosphorylase superfamily Trad_1690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Trad_1690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trad_1691 PF00378 Enoyl-CoA hydratase/isomerase Trad_1694 PF00561 alpha/beta hydrolase fold Trad_1698 PF02608 ABC transporter substrate-binding protein PnrA-like Trad_1699 PF01979 Amidohydrolase family Trad_1699 PF13382 Adenine deaminase C-terminal domain Trad_1700 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Trad_1700 PF01926 50S ribosome-binding GTPase Trad_1701 PF00551 Formyl transferase Trad_1701 PF02911 Formyl transferase, C-terminal domain Trad_1702 PF01327 Polypeptide deformylase Trad_1704 PF02457 DisA bacterial checkpoint controller nucleotide-binding Trad_1709 PF01571 Aminomethyltransferase folate-binding domain Trad_1711 PF02310 B12 binding domain Trad_1713 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_1713 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_1714 PF02686 Glu-tRNAGln amidotransferase C subunit Trad_1716 PF02403 Seryl-tRNA synthetase N-terminal domain Trad_1716 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trad_1718 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_1720 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_1720 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1721 PF01979 Amidohydrolase family Trad_1723 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Trad_1723 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_1723 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_1724 PF07736 Chorismate mutase type I Trad_1727 PF00356 Bacterial regulatory proteins, lacI family Trad_1728 PF02449 Beta-galactosidase Trad_1728 PF08533 Beta-galactosidase C-terminal domain Trad_1728 PF08532 Beta-galactosidase trimerisation domain Trad_1729 PF01547 Bacterial extracellular solute-binding protein Trad_1730 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1731 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1732 PF01557 Fumarylacetoacetate (FAA) hydrolase family Trad_1733 PF00753 Metallo-beta-lactamase superfamily Trad_1734 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1736 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Trad_1737 PF00005 ABC transporter Trad_1737 PF00571 CBS domain Trad_1738 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1739 PF01055 Glycosyl hydrolases family 31 Trad_1739 PF17137 Domain of unknown function (DUF5110) Trad_1739 PF13802 Galactose mutarotase-like Trad_1739 PF16338 Domain of unknown function (DUF4968) Trad_1745 PF00361 Proton-conducting membrane transporter Trad_1749 PF03334 Na+/H+ antiporter subunit Trad_1752 PF00764 Arginosuccinate synthase Trad_1756 PF00206 Lyase Trad_1756 PF14698 Argininosuccinate lyase C-terminal Trad_1757 PF00583 Acetyltransferase (GNAT) family Trad_1758 PF00072 Response regulator receiver domain Trad_1758 PF00990 Diguanylate cyclase, GGDEF domain Trad_1759 PF00710 Asparaginase, N-terminal Trad_1759 PF17763 Glutaminase/Asparaginase C-terminal domain Trad_1764 PF03807 NADP oxidoreductase coenzyme F420-dependent Trad_1764 PF14748 Pyrroline-5-carboxylate reductase dimerisation Trad_1766 PF01702 Queuine tRNA-ribosyltransferase Trad_1767 PF01695 IstB-like ATP binding protein Trad_1767 PF07319 Primosomal protein DnaI N-terminus Trad_1769 PF00923 Transaldolase/Fructose-6-phosphate aldolase Trad_1771 PF03129 Anticodon binding domain Trad_1771 PF13393 Histidyl-tRNA synthetase Trad_1772 PF00152 tRNA synthetases class II (D, K and N) Trad_1772 PF02938 GAD domain Trad_1772 PF01336 OB-fold nucleic acid binding domain Trad_1774 PF00152 tRNA synthetases class II (D, K and N) Trad_1774 PF01336 OB-fold nucleic acid binding domain Trad_1779 PF00005 ABC transporter Trad_1779 PF16326 ABC transporter C-terminal domain Trad_1779 PF12848 ABC transporter Trad_1782 PF00072 Response regulator receiver domain Trad_1782 PF00196 Bacterial regulatory proteins, luxR family Trad_1793 PF00571 CBS domain Trad_1794 PF08240 Alcohol dehydrogenase GroES-like domain Trad_1796 PF07730 Histidine kinase Trad_1796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_1797 PF01152 Bacterial-like globin Trad_1799 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Trad_1799 PF02896 PEP-utilising enzyme, TIM barrel domain Trad_1799 PF00391 PEP-utilising enzyme, mobile domain Trad_1800 PF00106 short chain dehydrogenase Trad_1801 PF01547 Bacterial extracellular solute-binding protein Trad_1802 PF00266 Aminotransferase class-V Trad_1803 PF02082 Transcriptional regulator Trad_1811 PF00589 Phage integrase family Trad_1811 PF02899 Phage integrase, N-terminal SAM-like domain Trad_1813 PF11897 Protein of unknown function (DUF3417) Trad_1813 PF00343 Carbohydrate phosphorylase Trad_1817 PF09115 DNA polymerase III, delta subunit, C terminal Trad_1820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1821 PF00294 pfkB family carbohydrate kinase Trad_1827 PF00356 Bacterial regulatory proteins, lacI family Trad_1828 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1829 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1832 PF00248 Aldo/keto reductase family Trad_1836 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1836 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1837 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Trad_1837 PF13378 Enolase C-terminal domain-like Trad_1838 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_1841 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1841 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1842 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1842 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1843 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1843 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1846 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1846 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1847 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1847 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1849 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_1849 PF00005 ABC transporter Trad_1850 PF00005 ABC transporter Trad_1850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_1851 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1851 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_1852 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1853 PF05175 Methyltransferase small domain Trad_1853 PF08468 Methyltransferase small domain N-terminal Trad_1854 PF00814 Glycoprotease family Trad_1855 PF13439 Glycosyltransferase Family 4 Trad_1855 PF00534 Glycosyl transferases group 1 Trad_1860 PF10415 Fumarase C C-terminus Trad_1860 PF00206 Lyase Trad_1866 PF00155 Aminotransferase class I and II Trad_1867 PF03167 Uracil DNA glycosylase superfamily Trad_1868 PF00132 Bacterial transferase hexapeptide (six repeats) Trad_1868 PF06426 Serine acetyltransferase, N-terminal Trad_1870 PF12146 Serine aminopeptidase, S33 Trad_1871 PF13344 Haloacid dehalogenase-like hydrolase Trad_1871 PF00293 NUDIX domain Trad_1873 PF01761 3-dehydroquinate synthase Trad_1878 PF01209 ubiE/COQ5 methyltransferase family Trad_1879 PF04226 Transglycosylase associated protein Trad_1880 PF01619 Proline dehydrogenase Trad_1881 PF00171 Aldehyde dehydrogenase family Trad_1883 PF00005 ABC transporter Trad_1884 PF00005 ABC transporter Trad_1884 PF12399 Branched-chain amino acid ATP-binding cassette transporter Trad_1887 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Trad_1888 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Trad_1888 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Trad_1890 PF00171 Aldehyde dehydrogenase family Trad_1892 PF01557 Fumarylacetoacetate (FAA) hydrolase family Trad_1893 PF00701 Dihydrodipicolinate synthetase family Trad_1894 PF03061 Thioesterase superfamily Trad_1895 PF14535 AMP-binding enzyme C-terminal domain Trad_1895 PF00501 AMP-binding enzyme Trad_1898 PF01575 MaoC like domain Trad_1898 PF00171 Aldehyde dehydrogenase family Trad_1900 PF00034 Cytochrome c Trad_1901 PF00005 ABC transporter Trad_1902 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1903 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1904 PF12849 PBP superfamily domain Trad_1906 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1907 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1908 PF00005 ABC transporter Trad_1911 PF00005 ABC transporter Trad_1912 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1913 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1916 PF01638 HxlR-like helix-turn-helix Trad_1917 PF01515 Phosphate acetyl/butaryl transferase Trad_1917 PF07085 DRTGG domain Trad_1920 PF01554 MatE Trad_1921 PF00296 Luciferase-like monooxygenase Trad_1922 PF01411 tRNA synthetases class II (A) Trad_1922 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trad_1922 PF02272 DHHA1 domain Trad_1924 PF03652 Holliday junction resolvase Trad_1925 PF02618 YceG-like family Trad_1926 PF12704 MacB-like periplasmic core domain Trad_1926 PF02687 FtsX-like permease family Trad_1928 PF02631 RecX family Trad_1930 PF03061 Thioesterase superfamily Trad_1931 PF03989 DNA gyrase C-terminal domain, beta-propeller Trad_1931 PF00521 DNA gyrase/topoisomerase IV, subunit A Trad_1934 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trad_1935 PF03480 Bacterial extracellular solute-binding protein, family 7 Trad_1936 PF02416 mttA/Hcf106 family Trad_1937 PF00902 Sec-independent protein translocase protein (TatC) Trad_1938 PF00793 DAHP synthetase I family Trad_1938 PF01817 Chorismate mutase type II Trad_1944 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Trad_1944 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_1945 PF09369 Domain of unknown function (DUF1998) Trad_1945 PF00270 DEAD/DEAH box helicase Trad_1945 PF00271 Helicase conserved C-terminal domain Trad_1946 PF00535 Glycosyl transferase family 2 Trad_1950 PF00534 Glycosyl transferases group 1 Trad_1950 PF13439 Glycosyltransferase Family 4 Trad_1953 PF01594 AI-2E family transporter Trad_1954 PF00117 Glutamine amidotransferase class-I Trad_1954 PF06418 CTP synthase N-terminus Trad_1955 PF00485 Phosphoribulokinase / Uridine kinase family Trad_1959 PF13545 Crp-like helix-turn-helix domain Trad_1960 PF00202 Aminotransferase class-III Trad_1961 PF00689 Cation transporting ATPase, C-terminus Trad_1961 PF00690 Cation transporter/ATPase, N-terminus Trad_1962 PF00248 Aldo/keto reductase family Trad_1963 PF00365 Phosphofructokinase Trad_1968 PF00579 tRNA synthetases class I (W and Y) Trad_1969 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Trad_1969 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Trad_1970 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Trad_1970 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Trad_1972 PF09335 SNARE associated Golgi protein Trad_1974 PF01541 GIY-YIG catalytic domain Trad_1974 PF02151 UvrB/uvrC motif Trad_1974 PF08459 UvrC Helix-hairpin-helix N-terminal Trad_1975 PF13520 Amino acid permease Trad_1976 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1977 PF00528 Binding-protein-dependent transport system inner membrane component Trad_1979 PF11975 Family 4 glycosyl hydrolase C-terminal domain Trad_1979 PF02056 Family 4 glycosyl hydrolase Trad_1980 PF00356 Bacterial regulatory proteins, lacI family Trad_1981 PF01432 Peptidase family M3 Trad_1982 PF01966 HD domain Trad_1984 PF00108 Thiolase, N-terminal domain Trad_1984 PF02803 Thiolase, C-terminal domain Trad_1985 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Trad_1985 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Trad_1985 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Trad_1986 PF16360 GTP-binding GTPase Middle Region Trad_1986 PF13167 GTP-binding GTPase N-terminal Trad_1986 PF01926 50S ribosome-binding GTPase Trad_1987 PF04227 Indigoidine synthase A like protein Trad_1991 PF00005 ABC transporter Trad_1991 PF12704 MacB-like periplasmic core domain Trad_1991 PF02687 FtsX-like permease family Trad_1992 PF04241 Protein of unknown function (DUF423) Trad_1993 PF05974 Domain of unknown function (DUF892) Trad_1995 PF08379 Bacterial transglutaminase-like N-terminal region Trad_1995 PF01841 Transglutaminase-like superfamily Trad_1997 PF04168 A predicted alpha-helical domain with a conserved ER motif. Trad_1997 PF14403 Circularly permuted ATP-grasp type 2 Trad_1998 PF14403 Circularly permuted ATP-grasp type 2 Trad_1999 PF00749 tRNA synthetases class I (E and Q), catalytic domain Trad_2001 PF04371 Porphyromonas-type peptidyl-arginine deiminase Trad_2003 PF01551 Peptidase family M23 Trad_2003 PF01476 LysM domain Trad_2004 PF00271 Helicase conserved C-terminal domain Trad_2004 PF09382 RQC domain Trad_2004 PF16124 RecQ zinc-binding Trad_2004 PF00570 HRDC domain Trad_2004 PF00270 DEAD/DEAH box helicase Trad_2008 PF08245 Mur ligase middle domain Trad_2008 PF02875 Mur ligase family, glutamate ligase domain Trad_2008 PF01225 Mur ligase family, catalytic domain Trad_2009 PF04337 Protein of unknown function, DUF480 Trad_2010 PF04055 Radical SAM superfamily Trad_2010 PF18693 TRAM domain Trad_2010 PF00919 Uncharacterized protein family UPF0004 Trad_2012 PF00005 ABC transporter Trad_2013 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2014 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2015 PF00497 Bacterial extracellular solute-binding proteins, family 3 Trad_2016 PF01813 ATP synthase subunit D Trad_2017 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trad_2017 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trad_2018 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trad_2018 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trad_2018 PF16886 ATPsynthase alpha/beta subunit N-term extension Trad_2020 PF01992 ATP synthase (C/AC39) subunit Trad_2023 PF01496 V-type ATPase 116kDa subunit family Trad_2023 PF18670 V-type ATPase subunit I, N-terminal domain Trad_2025 PF00069 Protein kinase domain Trad_2025 PF03793 PASTA domain Trad_2029 PF00293 NUDIX domain Trad_2030 PF03819 MazG nucleotide pyrophosphohydrolase domain Trad_2033 PF01541 GIY-YIG catalytic domain Trad_2035 PF02390 Putative methyltransferase Trad_2036 PF00356 Bacterial regulatory proteins, lacI family Trad_2037 PF08532 Beta-galactosidase trimerisation domain Trad_2037 PF08533 Beta-galactosidase C-terminal domain Trad_2037 PF02449 Beta-galactosidase Trad_2038 PF07745 Glycosyl hydrolase family 53 Trad_2040 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2041 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2051 PF00924 Mechanosensitive ion channel Trad_2052 PF02504 Fatty acid synthesis protein Trad_2053 PF01479 S4 domain Trad_2053 PF00849 RNA pseudouridylate synthase Trad_2054 PF13439 Glycosyltransferase Family 4 Trad_2055 PF13439 Glycosyltransferase Family 4 Trad_2056 PF00999 Sodium/hydrogen exchanger family Trad_2059 PF00561 alpha/beta hydrolase fold Trad_2060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trad_2060 PF00128 Alpha amylase, catalytic domain Trad_2061 PF01047 MarR family Trad_2065 PF00672 HAMP domain Trad_2065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_2065 PF00512 His Kinase A (phospho-acceptor) domain Trad_2066 PF00486 Transcriptional regulatory protein, C terminal Trad_2066 PF00072 Response regulator receiver domain Trad_2067 PF04029 2-phosphosulpholactate phosphatase Trad_2069 PF01906 Putative heavy-metal-binding Trad_2070 PF00152 tRNA synthetases class II (D, K and N) Trad_2070 PF01336 OB-fold nucleic acid binding domain Trad_2071 PF00265 Thymidine kinase Trad_2073 PF00227 Proteasome subunit Trad_2074 PF00004 ATPase family associated with various cellular activities (AAA) Trad_2074 PF07724 AAA domain (Cdc48 subfamily) Trad_2074 PF10431 C-terminal, D2-small domain, of ClpB protein Trad_2077 PF00300 Histidine phosphatase superfamily (branch 1) Trad_2078 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trad_2078 PF00128 Alpha amylase, catalytic domain Trad_2078 PF11941 Domain of unknown function (DUF3459) Trad_2079 PF00128 Alpha amylase, catalytic domain Trad_2081 PF02583 Metal-sensitive transcriptional repressor Trad_2083 PF00403 Heavy-metal-associated domain Trad_2085 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Trad_2085 PF04055 Radical SAM superfamily Trad_2086 PF03099 Biotin/lipoate A/B protein ligase family Trad_2088 PF00313 'Cold-shock' DNA-binding domain Trad_2091 PF00588 SpoU rRNA Methylase family Trad_2091 PF12105 SpoU, rRNA methylase, C-terminal Trad_2092 PF00232 Glycosyl hydrolase family 1 Trad_2093 PF01261 Xylose isomerase-like TIM barrel Trad_2095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Trad_2096 PF04616 Glycosyl hydrolases family 43 Trad_2096 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Trad_2097 PF00553 Cellulose binding domain Trad_2097 PF03422 Carbohydrate binding module (family 6) Trad_2097 PF00331 Glycosyl hydrolase family 10 Trad_2100 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2101 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2103 PF03422 Carbohydrate binding module (family 6) Trad_2103 PF00331 Glycosyl hydrolase family 10 Trad_2103 PF00553 Cellulose binding domain Trad_2104 PF00356 Bacterial regulatory proteins, lacI family Trad_2105 PF00719 Inorganic pyrophosphatase Trad_2106 PF01174 SNO glutamine amidotransferase family Trad_2107 PF03576 Peptidase family S58 Trad_2108 PF00905 Penicillin binding protein transpeptidase domain Trad_2108 PF00912 Transglycosylase Trad_2112 PF05025 RbsD / FucU transport protein family Trad_2113 PF00270 DEAD/DEAH box helicase Trad_2113 PF03880 DbpA RNA binding domain Trad_2113 PF00271 Helicase conserved C-terminal domain Trad_2114 PF04226 Transglycosylase associated protein Trad_2115 PF00149 Calcineurin-like phosphoesterase Trad_2117 PF00109 Beta-ketoacyl synthase, N-terminal domain Trad_2117 PF16197 Ketoacyl-synthetase C-terminal extension Trad_2117 PF02801 Beta-ketoacyl synthase, C-terminal domain Trad_2117 PF08659 KR domain Trad_2117 PF00550 Phosphopantetheine attachment site Trad_2117 PF14765 Polyketide synthase dehydratase Trad_2117 PF00698 Acyl transferase domain Trad_2117 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2117 PF00107 Zinc-binding dehydrogenase Trad_2118 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_2118 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Trad_2119 PF09348 Domain of unknown function (DUF1990) Trad_2121 PF08264 Anticodon-binding domain of tRNA Trad_2121 PF00133 tRNA synthetases class I (I, L, M and V) Trad_2121 PF13603 Leucyl-tRNA synthetase, Domain 2 Trad_2121 PF09334 tRNA synthetases class I (M) Trad_2125 PF00313 'Cold-shock' DNA-binding domain Trad_2126 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trad_2127 PF00437 Type II/IV secretion system protein Trad_2129 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Trad_2130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Trad_2135 PF01039 Carboxyl transferase domain Trad_2138 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Trad_2139 PF01261 Xylose isomerase-like TIM barrel Trad_2142 PF05336 L-rhamnose mutarotase Trad_2147 PF00999 Sodium/hydrogen exchanger family Trad_2148 PF00994 Probable molybdopterin binding domain Trad_2148 PF18146 Damage-inducible protein CinA KH domain Trad_2148 PF02464 Competence-damaged protein Trad_2149 PF00154 recA bacterial DNA recombination protein Trad_2150 PF00013 KH domain Trad_2150 PF01966 HD domain Trad_2150 PF12072 Domain of unknown function (DUF3552) Trad_2151 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Trad_2151 PF14572 Phosphoribosyl synthetase-associated domain Trad_2152 PF14693 Ribosomal protein TL5, C-terminal domain Trad_2152 PF01386 Ribosomal L25p family Trad_2153 PF01195 Peptidyl-tRNA hydrolase Trad_2154 PF01451 Low molecular weight phosphotyrosine protein phosphatase Trad_2155 PF00230 Major intrinsic protein Trad_2156 PF01451 Low molecular weight phosphotyrosine protein phosphatase Trad_2161 PF00561 alpha/beta hydrolase fold Trad_2162 PF00144 Beta-lactamase Trad_2165 PF05958 tRNA (Uracil-5-)-methyltransferase Trad_2168 PF01070 FMN-dependent dehydrogenase Trad_2169 PF00082 Subtilase family Trad_2169 PF01483 Proprotein convertase P-domain Trad_2170 PF00581 Rhodanese-like domain Trad_2171 PF07690 Major Facilitator Superfamily Trad_2172 PF00588 SpoU rRNA Methylase family Trad_2173 PF00795 Carbon-nitrogen hydrolase Trad_2173 PF02540 NAD synthase Trad_2174 PF02540 NAD synthase Trad_2176 PF01741 Large-conductance mechanosensitive channel, MscL Trad_2180 PF00005 ABC transporter Trad_2181 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2181 PF00107 Zinc-binding dehydrogenase Trad_2182 PF13416 Bacterial extracellular solute-binding protein Trad_2183 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2184 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2186 PF00107 Zinc-binding dehydrogenase Trad_2186 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2187 PF17831 Pyruvate dehydrogenase E1 component middle domain Trad_2187 PF00456 Transketolase, thiamine diphosphate binding domain Trad_2188 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Trad_2188 PF00364 Biotin-requiring enzyme Trad_2188 PF02817 e3 binding domain Trad_2194 PF00483 Nucleotidyl transferase Trad_2195 PF01494 FAD binding domain Trad_2197 PF00195 Chalcone and stilbene synthases, N-terminal domain Trad_2197 PF02797 Chalcone and stilbene synthases, C-terminal domain Trad_2198 PF01048 Phosphorylase superfamily Trad_2205 PF00330 Aconitase family (aconitate hydratase) Trad_2206 PF00694 Aconitase C-terminal domain Trad_2208 PF00180 Isocitrate/isopropylmalate dehydrogenase Trad_2209 PF00561 alpha/beta hydrolase fold Trad_2210 PF00994 Probable molybdopterin binding domain Trad_2211 PF00155 Aminotransferase class I and II Trad_2213 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Trad_2213 PF13378 Enolase C-terminal domain-like Trad_2214 PF02092 Glycyl-tRNA synthetase beta subunit Trad_2215 PF02091 Glycyl-tRNA synthetase alpha subunit Trad_2216 PF00004 ATPase family associated with various cellular activities (AAA) Trad_2216 PF07724 AAA domain (Cdc48 subfamily) Trad_2216 PF17871 AAA lid domain Trad_2216 PF02861 Clp amino terminal domain, pathogenicity island component Trad_2216 PF10431 C-terminal, D2-small domain, of ClpB protein Trad_2217 PF18073 Rubredoxin metal binding domain Trad_2218 PF01938 TRAM domain Trad_2220 PF01385 Probable transposase Trad_2220 PF07282 Putative transposase DNA-binding domain Trad_2220 PF12323 Helix-turn-helix domain Trad_2223 PF00342 Phosphoglucose isomerase Trad_2224 PF01040 UbiA prenyltransferase family Trad_2225 PF13087 AAA domain Trad_2225 PF13086 AAA domain Trad_2225 PF13195 Protein of unknown function (DUF4011) Trad_2225 PF13195 Protein of unknown function (DUF4011) Trad_2225 PF13087 AAA domain Trad_2225 PF13086 AAA domain Trad_2228 PF00171 Aldehyde dehydrogenase family Trad_2230 PF00111 2Fe-2S iron-sulfur cluster binding domain Trad_2230 PF00175 Oxidoreductase NAD-binding domain Trad_2230 PF00970 Oxidoreductase FAD-binding domain Trad_2232 PF01497 Periplasmic binding protein Trad_2234 PF01923 Cobalamin adenosyltransferase Trad_2236 PF04235 Protein of unknown function (DUF418) Trad_2238 PF04235 Protein of unknown function (DUF418) Trad_2241 PF01593 Flavin containing amine oxidoreductase Trad_2242 PF00535 Glycosyl transferase family 2 Trad_2246 PF01906 Putative heavy-metal-binding Trad_2249 PF04551 GcpE protein Trad_2250 PF00106 short chain dehydrogenase Trad_2251 PF01965 DJ-1/PfpI family Trad_2254 PF09084 NMT1/THI5 like Trad_2255 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2256 PF00005 ABC transporter Trad_2259 PF00459 Inositol monophosphatase family Trad_2260 PF13286 Phosphohydrolase-associated domain Trad_2260 PF01966 HD domain Trad_2261 PF01883 Iron-sulfur cluster assembly protein Trad_2261 PF10609 NUBPL iron-transfer P-loop NTPase Trad_2263 PF00117 Glutamine amidotransferase class-I Trad_2263 PF00958 GMP synthase C terminal domain Trad_2263 PF02540 NAD synthase Trad_2266 PF07687 Peptidase dimerisation domain Trad_2266 PF01546 Peptidase family M20/M25/M40 Trad_2267 PF01628 HrcA protein C terminal domain Trad_2267 PF08220 DeoR-like helix-turn-helix domain Trad_2268 PF02391 MoaE protein Trad_2274 PF00723 Glycosyl hydrolases family 15 Trad_2275 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Trad_2275 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Trad_2277 PF00561 alpha/beta hydrolase fold Trad_2278 PF01053 Cys/Met metabolism PLP-dependent enzyme Trad_2279 PF01053 Cys/Met metabolism PLP-dependent enzyme Trad_2280 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2281 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2284 PF01244 Membrane dipeptidase (Peptidase family M19) Trad_2285 PF01207 Dihydrouridine synthase (Dus) Trad_2287 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_2288 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2289 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_2289 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2290 PF00005 ABC transporter Trad_2290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_2291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Trad_2291 PF00005 ABC transporter Trad_2293 PF00923 Transaldolase/Fructose-6-phosphate aldolase Trad_2294 PF02653 Branched-chain amino acid transport system / permease component Trad_2295 PF00005 ABC transporter Trad_2297 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Trad_2297 PF01676 Metalloenzyme superfamily Trad_2298 PF01547 Bacterial extracellular solute-binding protein Trad_2299 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2300 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2304 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Trad_2305 PF01867 CRISPR associated protein Cas1 Trad_2306 PF08798 CRISPR associated protein Trad_2307 PF09704 CRISPR-associated protein (Cas_Cas5) Trad_2308 PF09344 CT1975-like protein Trad_2309 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) Trad_2310 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) Trad_2312 PF18019 HD domain Trad_2312 PF18395 Cas3 C-terminal domain Trad_2314 PF01476 LysM domain Trad_2314 PF08525 Opacity-associated protein A N-terminal motif Trad_2314 PF01551 Peptidase family M23 Trad_2315 PF07497 Rho termination factor, RNA-binding domain Trad_2315 PF07498 Rho termination factor, N-terminal domain Trad_2315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trad_2316 PF08264 Anticodon-binding domain of tRNA Trad_2316 PF00133 tRNA synthetases class I (I, L, M and V) Trad_2317 PF03631 Virulence factor BrkB Trad_2318 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Trad_2318 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Trad_2319 PF00162 Phosphoglycerate kinase Trad_2320 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Trad_2320 PF16824 C-terminal carbohydrate-binding module Trad_2322 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Trad_2322 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_2322 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_2324 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Trad_2324 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_2324 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_2329 PF00291 Pyridoxal-phosphate dependent enzyme Trad_2330 PF00290 Tryptophan synthase alpha chain Trad_2331 PF03330 Lytic transglycolase Trad_2331 PF05036 Sporulation related domain Trad_2333 PF01026 TatD related DNase Trad_2338 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Trad_2338 PF00437 Type II/IV secretion system protein Trad_2339 PF00437 Type II/IV secretion system protein Trad_2342 PF01070 FMN-dependent dehydrogenase Trad_2343 PF00005 ABC transporter Trad_2344 PF12679 ABC-2 family transporter protein Trad_2345 PF00230 Major intrinsic protein Trad_2349 PF00664 ABC transporter transmembrane region Trad_2349 PF00005 ABC transporter Trad_2350 PF00664 ABC transporter transmembrane region Trad_2350 PF00005 ABC transporter Trad_2351 PF03459 TOBE domain Trad_2351 PF17912 MalK OB fold domain Trad_2351 PF00005 ABC transporter Trad_2352 PF00491 Arginase family Trad_2353 PF07733 Bacterial DNA polymerase III alpha NTPase domain Trad_2353 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Trad_2353 PF14579 Helix-hairpin-helix motif Trad_2353 PF02811 PHP domain Trad_2355 PF01556 DnaJ C terminal domain Trad_2355 PF00226 DnaJ domain Trad_2355 PF00684 DnaJ central domain Trad_2356 PF00005 ABC transporter Trad_2357 PF13458 Periplasmic binding protein Trad_2358 PF02653 Branched-chain amino acid transport system / permease component Trad_2358 PF11862 Domain of unknown function (DUF3382) Trad_2359 PF02653 Branched-chain amino acid transport system / permease component Trad_2360 PF00501 AMP-binding enzyme Trad_2361 PF00005 ABC transporter Trad_2361 PF12399 Branched-chain amino acid ATP-binding cassette transporter Trad_2364 PF00027 Cyclic nucleotide-binding domain Trad_2364 PF01734 Patatin-like phospholipase Trad_2365 PF00266 Aminotransferase class-V Trad_2366 PF04199 Putative cyclase Trad_2367 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trad_2367 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Trad_2367 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Trad_2367 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Trad_2368 PF00476 DNA polymerase family A Trad_2368 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Trad_2368 PF09281 Taq polymerase, exonuclease Trad_2368 PF01367 5'-3' exonuclease, C-terminal SAM fold Trad_2369 PF03853 YjeF-related protein N-terminus Trad_2369 PF01256 Carbohydrate kinase Trad_2370 PF08544 GHMP kinases C terminal Trad_2370 PF00288 GHMP kinases N terminal domain Trad_2373 PF12169 DNA polymerase III subunits gamma and tau domain III Trad_2375 PF02575 YbaB/EbfC DNA-binding family Trad_2376 PF02132 RecR protein Trad_2376 PF13662 Toprim domain Trad_2377 PF01751 Toprim domain Trad_2377 PF01131 DNA topoisomerase Trad_2377 PF13368 Topoisomerase C-terminal repeat Trad_2379 PF00005 ABC transporter Trad_2380 PF05922 Peptidase inhibitor I9 Trad_2380 PF00082 Subtilase family Trad_2381 PF17479 Protein of unknown function (DUF3048) C-terminal domain Trad_2381 PF11258 Protein of unknown function (DUF3048) N-terminal domain Trad_2382 PF02472 Biopolymer transport protein ExbD/TolR Trad_2383 PF01618 MotA/TolQ/ExbB proton channel family Trad_2384 PF00311 Phosphoenolpyruvate carboxylase Trad_2385 PF13277 YmdB-like protein Trad_2387 PF00072 Response regulator receiver domain Trad_2387 PF00990 Diguanylate cyclase, GGDEF domain Trad_2388 PF01037 Lrp/AsnC ligand binding domain Trad_2390 PF00565 Staphylococcal nuclease homologue Trad_2391 PF00994 Probable molybdopterin binding domain Trad_2391 PF03454 MoeA C-terminal region (domain IV) Trad_2391 PF03453 MoeA N-terminal region (domain I and II) Trad_2393 PF02245 Methylpurine-DNA glycosylase (MPG) Trad_2395 PF03358 NADPH-dependent FMN reductase Trad_2397 PF16916 Dimerisation domain of Zinc Transporter Trad_2397 PF01545 Cation efflux family Trad_2399 PF01546 Peptidase family M20/M25/M40 Trad_2399 PF07687 Peptidase dimerisation domain Trad_2402 PF00781 Diacylglycerol kinase catalytic domain Trad_2405 PF00909 Ammonium Transporter Family Trad_2406 PF00543 Nitrogen regulatory protein P-II Trad_2407 PF00919 Uncharacterized protein family UPF0004 Trad_2407 PF01938 TRAM domain Trad_2407 PF04055 Radical SAM superfamily Trad_2408 PF00293 NUDIX domain Trad_2409 PF01568 Molydopterin dinucleotide binding domain Trad_2409 PF00384 Molybdopterin oxidoreductase Trad_2409 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Trad_2413 PF00248 Aldo/keto reductase family Trad_2416 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_2417 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2419 PF02417 Chromate transporter Trad_2421 PF13520 Amino acid permease Trad_2422 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Trad_2427 PF14535 AMP-binding enzyme C-terminal domain Trad_2427 PF00501 AMP-binding enzyme Trad_2429 PF01699 Sodium/calcium exchanger protein Trad_2430 PF07690 Major Facilitator Superfamily Trad_2433 PF13439 Glycosyltransferase Family 4 Trad_2433 PF00534 Glycosyl transferases group 1 Trad_2435 PF00497 Bacterial extracellular solute-binding proteins, family 3 Trad_2436 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2439 PF00842 Alanine racemase, C-terminal domain Trad_2439 PF01168 Alanine racemase, N-terminal domain Trad_2441 PF01547 Bacterial extracellular solute-binding protein Trad_2442 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2443 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2447 PF00486 Transcriptional regulatory protein, C terminal Trad_2447 PF00072 Response regulator receiver domain Trad_2449 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Trad_2450 PF01259 SAICAR synthetase Trad_2452 PF00206 Lyase Trad_2452 PF10397 Adenylosuccinate lyase C-terminus Trad_2455 PF01966 HD domain Trad_2463 PF03976 Polyphosphate kinase 2 (PPK2) Trad_2466 PF13416 Bacterial extracellular solute-binding protein Trad_2467 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2468 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2469 PF08402 TOBE domain Trad_2469 PF00005 ABC transporter Trad_2475 PF04983 RNA polymerase Rpb1, domain 3 Trad_2475 PF05000 RNA polymerase Rpb1, domain 4 Trad_2475 PF04998 RNA polymerase Rpb1, domain 5 Trad_2475 PF00623 RNA polymerase Rpb1, domain 2 Trad_2475 PF04997 RNA polymerase Rpb1, domain 1 Trad_2476 PF04565 RNA polymerase Rpb2, domain 3 Trad_2476 PF04561 RNA polymerase Rpb2, domain 2 Trad_2476 PF00562 RNA polymerase Rpb2, domain 6 Trad_2476 PF04560 RNA polymerase Rpb2, domain 7 Trad_2476 PF04563 RNA polymerase beta subunit Trad_2476 PF10385 RNA polymerase beta subunit external 1 domain Trad_2477 PF16320 Ribosomal protein L7/L12 dimerisation domain Trad_2477 PF00542 Ribosomal protein L7/L12 C-terminal domain Trad_2478 PF00466 Ribosomal protein L10 Trad_2479 PF00687 Ribosomal protein L1p/L10e family Trad_2480 PF03946 Ribosomal protein L11, N-terminal domain Trad_2480 PF00298 Ribosomal protein L11, RNA binding domain Trad_2481 PF00467 KOW motif Trad_2481 PF02357 Transcription termination factor nusG Trad_2482 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Trad_2483 PF00471 Ribosomal protein L33 Trad_2484 PF03144 Elongation factor Tu domain 2 Trad_2484 PF03143 Elongation factor Tu C-terminal domain Trad_2484 PF00009 Elongation factor Tu GTP binding domain Trad_2485 PF14791 DNA polymerase beta thumb Trad_2485 PF02811 PHP domain Trad_2485 PF14716 Helix-hairpin-helix domain Trad_2487 PF00692 dUTPase Trad_2488 PF00512 His Kinase A (phospho-acceptor) domain Trad_2488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_2488 PF00672 HAMP domain Trad_2489 PF00486 Transcriptional regulatory protein, C terminal Trad_2489 PF00072 Response regulator receiver domain Trad_2493 PF00535 Glycosyl transferase family 2 Trad_2498 PF01509 TruB family pseudouridylate synthase (N terminal domain) Trad_2499 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Trad_2499 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Trad_2500 PF01510 N-acetylmuramoyl-L-alanine amidase Trad_2500 PF01471 Putative peptidoglycan binding domain Trad_2501 PF01330 RuvA N terminal domain Trad_2501 PF07499 RuvA, C-terminal domain Trad_2502 PF00488 MutS domain V Trad_2502 PF01713 Smr domain Trad_2507 PF03641 Possible lysine decarboxylase Trad_2508 PF00072 Response regulator receiver domain Trad_2508 PF00196 Bacterial regulatory proteins, luxR family Trad_2509 PF07730 Histidine kinase Trad_2509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_2512 PF00082 Subtilase family Trad_2512 PF05922 Peptidase inhibitor I9 Trad_2516 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trad_2516 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trad_2517 PF01053 Cys/Met metabolism PLP-dependent enzyme Trad_2519 PF00809 Pterin binding enzyme Trad_2519 PF02574 Homocysteine S-methyltransferase Trad_2519 PF02607 B12 binding domain Trad_2519 PF02310 B12 binding domain Trad_2519 PF02965 Vitamin B12 dependent methionine synthase, activation domain Trad_2520 PF07690 Major Facilitator Superfamily Trad_2524 PF00196 Bacterial regulatory proteins, luxR family Trad_2524 PF00072 Response regulator receiver domain Trad_2528 PF02547 Queuosine biosynthesis protein Trad_2531 PF00248 Aldo/keto reductase family Trad_2534 PF00067 Cytochrome P450 Trad_2536 PF11497 NADH-quinone oxidoreductase chain 15 Trad_2540 PF00005 ABC transporter Trad_2540 PF00664 ABC transporter transmembrane region Trad_2541 PF02566 OsmC-like protein Trad_2543 PF00271 Helicase conserved C-terminal domain Trad_2543 PF04851 Type III restriction enzyme, res subunit Trad_2543 PF02151 UvrB/uvrC motif Trad_2543 PF12344 Ultra-violet resistance protein B Trad_2543 PF17757 UvrB interaction domain Trad_2546 PF00398 Ribosomal RNA adenine dimethylase Trad_2548 PF03572 Peptidase family S41 Trad_2548 PF01471 Putative peptidoglycan binding domain Trad_2548 PF17820 PDZ domain Trad_2549 PF00753 Metallo-beta-lactamase superfamily Trad_2550 PF00999 Sodium/hydrogen exchanger family Trad_2550 PF02080 TrkA-C domain Trad_2550 PF03471 Transporter associated domain Trad_2551 PF14821 Threonine synthase N terminus Trad_2551 PF00291 Pyridoxal-phosphate dependent enzyme Trad_2552 PF03447 Homoserine dehydrogenase, NAD binding domain Trad_2552 PF01842 ACT domain Trad_2552 PF00742 Homoserine dehydrogenase Trad_2553 PF00474 Sodium:solute symporter family Trad_2555 PF06071 Protein of unknown function (DUF933) Trad_2555 PF01926 50S ribosome-binding GTPase Trad_2556 PF00027 Cyclic nucleotide-binding domain Trad_2556 PF13545 Crp-like helix-turn-helix domain Trad_2557 PF02632 BioY family Trad_2560 PF00456 Transketolase, thiamine diphosphate binding domain Trad_2560 PF02780 Transketolase, C-terminal domain Trad_2560 PF02779 Transketolase, pyrimidine binding domain Trad_2562 PF01121 Dephospho-CoA kinase Trad_2563 PF01743 Poly A polymerase head domain Trad_2563 PF12627 Probable RNA and SrmB- binding site of polymerase A Trad_2563 PF01966 HD domain Trad_2564 PF01594 AI-2E family transporter Trad_2565 PF02423 Ornithine cyclodeaminase/mu-crystallin family Trad_2567 PF00155 Aminotransferase class I and II Trad_2573 PF00885 6,7-dimethyl-8-ribityllumazine synthase Trad_2575 PF16363 GDP-mannose 4,6 dehydratase Trad_2576 PF01063 Amino-transferase class IV Trad_2577 PF03328 HpcH/HpaI aldolase/citrate lyase family Trad_2578 PF01965 DJ-1/PfpI family Trad_2582 PF09180 Prolyl-tRNA synthetase, C-terminal Trad_2582 PF03129 Anticodon binding domain Trad_2582 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trad_2585 PF01546 Peptidase family M20/M25/M40 Trad_2585 PF07687 Peptidase dimerisation domain Trad_2586 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_2587 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2590 PF01170 Putative RNA methylase family UPF0020 Trad_2590 PF02926 THUMP domain Trad_2591 PF00575 S1 RNA binding domain Trad_2592 PF04011 LemA family Trad_2595 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Trad_2596 PF01502 Phosphoribosyl-AMP cyclohydrolase Trad_2596 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Trad_2597 PF01207 Dihydrouridine synthase (Dus) Trad_2598 PF00551 Formyl transferase Trad_2599 PF02843 Phosphoribosylglycinamide synthetase, C domain Trad_2599 PF02844 Phosphoribosylglycinamide synthetase, N domain Trad_2599 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trad_2602 PF02779 Transketolase, pyrimidine binding domain Trad_2602 PF02780 Transketolase, C-terminal domain Trad_2602 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Trad_2603 PF02190 ATP-dependent protease La (LON) substrate-binding domain Trad_2603 PF00004 ATPase family associated with various cellular activities (AAA) Trad_2603 PF05362 Lon protease (S16) C-terminal proteolytic domain Trad_2604 PF01142 tRNA pseudouridine synthase D (TruD) Trad_2606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_2606 PF00672 HAMP domain Trad_2606 PF00512 His Kinase A (phospho-acceptor) domain Trad_2606 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Trad_2606 PF08448 PAS fold Trad_2607 PF01351 Ribonuclease HII Trad_2608 PF04468 PSP1 C-terminal conserved region Trad_2609 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2611 PF00230 Major intrinsic protein Trad_2614 PF08402 TOBE domain Trad_2614 PF00005 ABC transporter Trad_2618 PF13416 Bacterial extracellular solute-binding protein Trad_2619 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2620 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2621 PF01106 NifU-like domain Trad_2621 PF01521 Iron-sulphur cluster biosynthesis Trad_2622 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Trad_2622 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Trad_2623 PF13380 CoA binding domain Trad_2623 PF13607 Succinyl-CoA ligase like flavodoxin domain Trad_2623 PF00583 Acetyltransferase (GNAT) family Trad_2626 PF03707 Bacterial signalling protein N terminal repeat Trad_2626 PF00990 Diguanylate cyclase, GGDEF domain Trad_2626 PF00563 EAL domain Trad_2628 PF02146 Sir2 family Trad_2629 PF04107 Glutamate-cysteine ligase family 2(GCS2) Trad_2630 PF12697 Alpha/beta hydrolase family Trad_2634 PF13460 NAD(P)H-binding Trad_2634 PF11066 Protein of unknown function (DUF2867) Trad_2635 PF00348 Polyprenyl synthetase Trad_2640 PF00106 short chain dehydrogenase Trad_2646 PF13378 Enolase C-terminal domain-like Trad_2646 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Trad_2649 PF01613 Flavin reductase like domain Trad_2651 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Trad_2652 PF01134 Glucose inhibited division protein A Trad_2654 PF01370 NAD dependent epimerase/dehydratase family Trad_2660 PF01048 Phosphorylase superfamily Trad_2661 PF01168 Alanine racemase, N-terminal domain Trad_2663 PF13545 Crp-like helix-turn-helix domain Trad_2663 PF00027 Cyclic nucleotide-binding domain Trad_2664 PF13411 MerR HTH family regulatory protein Trad_2664 PF02607 B12 binding domain Trad_2665 PF00075 RNase H Trad_2668 PF00072 Response regulator receiver domain Trad_2668 PF00196 Bacterial regulatory proteins, luxR family Trad_2669 PF04055 Radical SAM superfamily Trad_2669 PF13186 Iron-sulfur cluster-binding domain Trad_2672 PF00999 Sodium/hydrogen exchanger family Trad_2672 PF00582 Universal stress protein family Trad_2673 PF13545 Crp-like helix-turn-helix domain Trad_2673 PF00027 Cyclic nucleotide-binding domain Trad_2674 PF03334 Na+/H+ antiporter subunit Trad_2675 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Trad_2678 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Trad_2679 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Trad_2681 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Trad_2682 PF01926 50S ribosome-binding GTPase Trad_2682 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Trad_2687 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trad_2687 PF02806 Alpha amylase, C-terminal all-beta domain Trad_2687 PF00128 Alpha amylase, catalytic domain Trad_2694 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trad_2695 PF00248 Aldo/keto reductase family Trad_2696 PF00753 Metallo-beta-lactamase superfamily Trad_2697 PF08264 Anticodon-binding domain of tRNA Trad_2697 PF00133 tRNA synthetases class I (I, L, M and V) Trad_2697 PF10458 Valyl tRNA synthetase tRNA binding arm Trad_2698 PF05958 tRNA (Uracil-5-)-methyltransferase Trad_2699 PF00730 HhH-GPD superfamily base excision DNA repair protein Trad_2700 PF00106 short chain dehydrogenase Trad_2702 PF02469 Fasciclin domain Trad_2703 PF01180 Dihydroorotate dehydrogenase Trad_2704 PF02742 Iron dependent repressor, metal binding and dimerisation domain Trad_2704 PF01325 Iron dependent repressor, N-terminal DNA binding domain Trad_2704 PF18357 Diphteria toxin repressor SH3 domain Trad_2705 PF01040 UbiA prenyltransferase family Trad_2706 PF04030 D-arabinono-1,4-lactone oxidase Trad_2706 PF01565 FAD binding domain Trad_2707 PF00106 short chain dehydrogenase Trad_2711 PF00271 Helicase conserved C-terminal domain Trad_2711 PF00176 SNF2 family N-terminal domain Trad_2718 PF01546 Peptidase family M20/M25/M40 Trad_2718 PF07687 Peptidase dimerisation domain Trad_2727 PF02629 CoA binding domain Trad_2727 PF06971 Putative DNA-binding protein N-terminus Trad_2730 PF04055 Radical SAM superfamily Trad_2732 PF00483 Nucleotidyl transferase Trad_2733 PF06480 FtsH Extracellular Trad_2733 PF17862 AAA+ lid domain Trad_2733 PF00004 ATPase family associated with various cellular activities (AAA) Trad_2733 PF01434 Peptidase family M41 Trad_2735 PF01230 HIT domain Trad_2736 PF13393 Histidyl-tRNA synthetase Trad_2737 PF01634 ATP phosphoribosyltransferase Trad_2739 PF02803 Thiolase, C-terminal domain Trad_2739 PF00108 Thiolase, N-terminal domain Trad_2740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Trad_2740 PF00378 Enoyl-CoA hydratase/isomerase Trad_2740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trad_2741 PF08032 RNA 2'-O ribose methyltransferase substrate binding Trad_2741 PF00588 SpoU rRNA Methylase family Trad_2747 PF01679 Proteolipid membrane potential modulator Trad_2748 PF07885 Ion channel Trad_2752 PF17755 UvrA DNA-binding domain Trad_2752 PF17760 UvrA interaction domain Trad_2752 PF00005 ABC transporter Trad_2754 PF01553 Acyltransferase Trad_2755 PF00216 Bacterial DNA-binding protein Trad_2756 PF03315 Serine dehydratase beta chain Trad_2756 PF01842 ACT domain Trad_2757 PF03313 Serine dehydratase alpha chain Trad_2758 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_2759 PF00459 Inositol monophosphatase family Trad_2762 PF02082 Transcriptional regulator Trad_2763 PF14765 Polyketide synthase dehydratase Trad_2763 PF00550 Phosphopantetheine attachment site Trad_2763 PF00698 Acyl transferase domain Trad_2763 PF02801 Beta-ketoacyl synthase, C-terminal domain Trad_2763 PF00109 Beta-ketoacyl synthase, N-terminal domain Trad_2763 PF16197 Ketoacyl-synthetase C-terminal extension Trad_2763 PF00107 Zinc-binding dehydrogenase Trad_2763 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2763 PF08659 KR domain Trad_2764 PF07722 Peptidase C26 Trad_2766 PF01842 ACT domain Trad_2766 PF02153 Prephenate dehydrogenase Trad_2768 PF04055 Radical SAM superfamily Trad_2768 PF06463 Molybdenum Cofactor Synthesis C Trad_2769 PF00149 Calcineurin-like phosphoesterase Trad_2770 PF00072 Response regulator receiver domain Trad_2771 PF00108 Thiolase, N-terminal domain Trad_2771 PF02803 Thiolase, C-terminal domain Trad_2773 PF01740 STAS domain Trad_2773 PF13426 PAS domain Trad_2774 PF06150 ChaB Trad_2777 PF00115 Cytochrome C and Quinol oxidase polypeptide I Trad_2777 PF00510 Cytochrome c oxidase subunit III Trad_2778 PF00034 Cytochrome c Trad_2778 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Trad_2778 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Trad_2779 PF01040 UbiA prenyltransferase family Trad_2779 PF02628 Cytochrome oxidase assembly protein Trad_2780 PF02628 Cytochrome oxidase assembly protein Trad_2780 PF01040 UbiA prenyltransferase family Trad_2784 PF00318 Ribosomal protein S2 Trad_2785 PF00889 Elongation factor TS Trad_2786 PF00696 Amino acid kinase family Trad_2787 PF01765 Ribosome recycling factor Trad_2790 PF01783 Ribosomal L32p protein family Trad_2791 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Trad_2791 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Trad_2792 PF00698 Acyl transferase domain Trad_2794 PF00550 Phosphopantetheine attachment site Trad_2795 PF02801 Beta-ketoacyl synthase, C-terminal domain Trad_2795 PF00109 Beta-ketoacyl synthase, N-terminal domain Trad_2797 PF00291 Pyridoxal-phosphate dependent enzyme Trad_2799 PF02645 Uncharacterised protein, DegV family COG1307 Trad_2800 PF13335 Magnesium chelatase, subunit ChlI C-terminal Trad_2800 PF01078 Magnesium chelatase, subunit ChlI Trad_2802 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Trad_2802 PF00034 Cytochrome c Trad_2802 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Trad_2803 PF00115 Cytochrome C and Quinol oxidase polypeptide I Trad_2804 PF00510 Cytochrome c oxidase subunit III Trad_2805 PF00034 Cytochrome c Trad_2812 PF01680 SOR/SNZ family Trad_2814 PF00591 Glycosyl transferase family, a/b domain Trad_2814 PF02885 Glycosyl transferase family, helical bundle domain Trad_2815 PF02709 N-terminal domain of galactosyltransferase Trad_2815 PF00535 Glycosyl transferase family 2 Trad_2816 PF00117 Glutamine amidotransferase class-I Trad_2818 PF00425 chorismate binding enzyme Trad_2818 PF04715 Anthranilate synthase component I, N terminal region Trad_2819 PF01850 PIN domain Trad_2824 PF02146 Sir2 family Trad_2825 PF01595 Cyclin M transmembrane N-terminal domain Trad_2825 PF00571 CBS domain Trad_2825 PF03471 Transporter associated domain Trad_2826 PF01712 Deoxynucleoside kinase Trad_2827 PF01712 Deoxynucleoside kinase Trad_2828 PF01225 Mur ligase family, catalytic domain Trad_2828 PF08245 Mur ligase middle domain Trad_2828 PF02875 Mur ligase family, glutamate ligase domain Trad_2829 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Trad_2830 PF03062 MBOAT, membrane-bound O-acyltransferase family Trad_2832 PF00591 Glycosyl transferase family, a/b domain Trad_2832 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Trad_2832 PF02885 Glycosyl transferase family, helical bundle domain Trad_2840 PF00899 ThiF family Trad_2841 PF00180 Isocitrate/isopropylmalate dehydrogenase Trad_2844 PF02687 FtsX-like permease family Trad_2844 PF18075 FtsX extracellular domain Trad_2846 PF16701 Adenylate cyclase regulatory domain Trad_2846 PF00211 Adenylate and Guanylate cyclase catalytic domain Trad_2848 PF00291 Pyridoxal-phosphate dependent enzyme Trad_2848 PF13291 ACT domain Trad_2850 PF01979 Amidohydrolase family Trad_2851 PF11741 AMIN domain Trad_2851 PF01520 N-acetylmuramoyl-L-alanine amidase Trad_2852 PF00293 NUDIX domain Trad_2856 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trad_2856 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Trad_2856 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Trad_2859 PF13439 Glycosyltransferase Family 4 Trad_2859 PF00534 Glycosyl transferases group 1 Trad_2860 PF16363 GDP-mannose 4,6 dehydratase Trad_2861 PF16363 GDP-mannose 4,6 dehydratase Trad_2862 PF13439 Glycosyltransferase Family 4 Trad_2862 PF00534 Glycosyl transferases group 1 Trad_2864 PF02397 Bacterial sugar transferase Trad_2865 PF00483 Nucleotidyl transferase Trad_2867 PF04321 RmlD substrate binding domain Trad_2868 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Trad_2869 PF16363 GDP-mannose 4,6 dehydratase Trad_2870 PF01255 Putative undecaprenyl diphosphate synthase Trad_2871 PF00483 Nucleotidyl transferase Trad_2871 PF01050 Mannose-6-phosphate isomerase Trad_2874 PF17854 FtsK alpha domain Trad_2874 PF01580 FtsK/SpoIIIE family Trad_2874 PF09397 Ftsk gamma domain Trad_2875 PF01594 AI-2E family transporter Trad_2877 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2878 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2880 PF00356 Bacterial regulatory proteins, lacI family Trad_2884 PF00850 Histone deacetylase domain Trad_2887 PF00107 Zinc-binding dehydrogenase Trad_2887 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2888 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2888 PF00107 Zinc-binding dehydrogenase Trad_2890 PF00356 Bacterial regulatory proteins, lacI family Trad_2892 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2893 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2894 PF16912 Glucose dehydrogenase C-terminus Trad_2894 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2895 PF00107 Zinc-binding dehydrogenase Trad_2895 PF08240 Alcohol dehydrogenase GroES-like domain Trad_2896 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Trad_2896 PF00534 Glycosyl transferases group 1 Trad_2898 PF03707 Bacterial signalling protein N terminal repeat Trad_2898 PF00990 Diguanylate cyclase, GGDEF domain Trad_2898 PF00563 EAL domain Trad_2902 PF07690 Major Facilitator Superfamily Trad_2905 PF00730 HhH-GPD superfamily base excision DNA repair protein Trad_2905 PF00633 Helix-hairpin-helix motif Trad_2905 PF10576 Iron-sulfur binding domain of endonuclease III Trad_2907 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trad_2910 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2910 PF12911 N-terminal TM domain of oligopeptide transport permease C Trad_2911 PF00528 Binding-protein-dependent transport system inner membrane component Trad_2914 PF00202 Aminotransferase class-III Trad_2917 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Trad_2917 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Trad_2918 PF00011 Hsp20/alpha crystallin family Trad_2919 PF00067 Cytochrome P450 Trad_2921 PF01613 Flavin reductase like domain Trad_2928 PF00118 TCP-1/cpn60 chaperonin family Trad_2929 PF00166 Chaperonin 10 Kd subunit Trad_2932 PF00749 tRNA synthetases class I (E and Q), catalytic domain Trad_2932 PF02637 GatB domain Trad_2932 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Trad_2933 PF13180 PDZ domain Trad_2934 PF02272 DHHA1 domain Trad_2934 PF01368 DHH family Trad_2935 PF00512 His Kinase A (phospho-acceptor) domain Trad_2935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trad_2936 PF00682 HMGL-like Trad_2937 PF02463 RecF/RecN/SMC N terminal domain Trad_2938 PF00266 Aminotransferase class-V Trad_2940 PF00248 Aldo/keto reductase family Trad_2941 PF00480 ROK family Trad_2945 PF13660 Domain of unknown function (DUF4147) Trad_2945 PF05161 MOFRL family Trad_2949 PF00501 AMP-binding enzyme Trad_2950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Trad_2950 PF02770 Acyl-CoA dehydrogenase, middle domain Trad_2950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Trad_2951 PF13614 AAA domain Trad_2951 PF13807 G-rich domain on putative tyrosine kinase Trad_2951 PF02706 Chain length determinant protein Trad_2953 PF00011 Hsp20/alpha crystallin family Trad_2957 PF04539 Sigma-70 region 3 Trad_2957 PF04545 Sigma-70, region 4 Trad_2957 PF00140 Sigma-70 factor, region 1.2 Trad_2957 PF04542 Sigma-70 region 2 Trad_2959 PF03449 Transcription elongation factor, N-terminal Trad_2959 PF01272 Transcription elongation factor, GreA/GreB, C-term Trad_2960 PF01336 OB-fold nucleic acid binding domain Trad_2960 PF00152 tRNA synthetases class II (D, K and N) Trad_2961 PF00128 Alpha amylase, catalytic domain Trad_2961 PF02903 Alpha amylase, N-terminal ig-like domain Trad_2961 PF16657 Maltogenic Amylase, C-terminal domain Trad_2962 PF03023 Lipid II flippase MurJ Trad_2963 PF00596 Class II Aldolase and Adducin N-terminal domain Trad_2964 PF02589 LUD domain Trad_2965 PF11870 Domain of unknown function (DUF3390) Trad_2965 PF02589 LUD domain Trad_2965 PF13183 4Fe-4S dicluster domain Trad_2966 PF02754 Cysteine-rich domain Trad_2968 PF08220 DeoR-like helix-turn-helix domain Trad_2968 PF00455 DeoR C terminal sensor domain Trad_2969 PF00085 Thioredoxin Trad_2970 PF01554 MatE Trad_2972 PF00334 Nucleoside diphosphate kinase Trad_2973 PF00581 Rhodanese-like domain Trad_2974 PF00361 Proton-conducting membrane transporter Trad_2975 PF00361 Proton-conducting membrane transporter Trad_2976 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Trad_2976 PF00361 Proton-conducting membrane transporter Trad_2977 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Trad_2978 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Trad_2979 PF12838 4Fe-4S dicluster domain Trad_2980 PF00146 NADH dehydrogenase Trad_2981 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Trad_2981 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Trad_2981 PF01568 Molydopterin dinucleotide binding domain Trad_2981 PF00384 Molybdopterin oxidoreductase Trad_2982 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Trad_2982 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Trad_2982 PF10531 SLBB domain Trad_2985 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Trad_2986 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Trad_2987 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Trad_2988 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Trad_2989 PF01475 Ferric uptake regulator family Trad_2990 PF00056 lactate/malate dehydrogenase, NAD binding domain Trad_2990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Trad_2991 PF17762 HTH domain found in ParB protein Trad_2991 PF02195 ParB-like nuclease domain Trad_2992 PF13614 AAA domain Trad_2993 PF02527 rRNA small subunit methyltransferase G Trad_2994 PF01134 Glucose inhibited division protein A Trad_2994 PF13932 GidA associated domain Trad_R0039 PF03441 FAD binding domain of DNA photolyase Trad_R0039 PF00875 DNA photolyase