Trad_0001 SM00382 ATPases associated with a variety of cellular activities Trad_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Trad_0002 SM00480 DNA polymerase III beta subunit Trad_0003 SM01192 Trad_0003 Trad_0003 SM01193 Trad_0003 Trad_0013 SM00271 DnaJ molecular chaperone homology domain Trad_0026 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_0042 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trad_0047 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Trad_0051 SM00382 ATPases associated with a variety of cellular activities Trad_0063 SM00859 Semialdehyde dehydrogenase, NAD binding domain Trad_0067 SM00935 Outer membrane protein (OmpH-like) Trad_0072 SM00382 ATPases associated with a variety of cellular activities Trad_0072 SM00962 SRP54-type protein, GTPase domain Trad_0072 SM00963 SRP54-type protein, helical bundle domain Trad_0073 SM00028 Tetratricopeptide repeats Trad_0074 SM00909 Sporulation and spore germination Trad_0076 SM00798 AICARFT/IMPCHase bienzyme Trad_0076 SM00851 MGS-like domain Trad_0077 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Trad_0077 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Trad_0094 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Trad_0094 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Trad_0105 SM00833 Cobalamin synthesis protein cobW C-terminal domain Trad_0113 SM00382 ATPases associated with a variety of cellular activities Trad_0129 SM00046 Diacylglycerol kinase catalytic domain (presumed) Trad_0132 SM00642 Alpha-amylase domain Trad_0139 SM00487 DEAD-like helicases superfamily Trad_0139 SM00490 helicase superfamily c-terminal domain Trad_0139 SM00982 Trad_0139 Trad_0139 SM01058 CarD-like/TRCF domain Trad_0159 SM00382 ATPases associated with a variety of cellular activities Trad_0160 SM00382 ATPases associated with a variety of cellular activities Trad_0161 SM00813 Alpha-L-arabinofuranosidase C-terminus Trad_0171 SM01021 Bacteriorhodopsin-like protein Trad_0176 SM00382 ATPases associated with a variety of cellular activities Trad_0176 SM01086 C-terminal, D2-small domain, of ClpB protein Trad_0178 SM00893 Electron transfer flavoprotein domain Trad_0179 SM00893 Electron transfer flavoprotein domain Trad_0186 SM00382 ATPases associated with a variety of cellular activities Trad_0192 SM00382 ATPases associated with a variety of cellular activities Trad_0192 SM00464 Found in ATP-dependent protease La (LON) Trad_0200 SM00849 Metallo-beta-lactamase superfamily Trad_0207 SM00917 LeuA allosteric (dimerisation) domain Trad_0208 SM00917 LeuA allosteric (dimerisation) domain Trad_0210 SM00861 Transketolase, pyrimidine binding domain Trad_0212 SM00829 Enoylreductase Trad_0216 SM00421 helix_turn_helix, Lux Regulon Trad_0217 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_0223 SM00448 cheY-homologous receiver domain Trad_0223 SM00862 Transcriptional regulatory protein, C terminal Trad_0224 SM00387 Histidine kinase-like ATPases Trad_0224 SM00388 His Kinase A (phosphoacceptor) domain Trad_0225 SM01004 Delta-aminolevulinic acid dehydratase Trad_0232 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Trad_0232 SM01232 Trad_0232 Trad_0239 SM00851 MGS-like domain Trad_0243 SM00822 Trad_0243 Trad_0246 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_0246 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_0247 SM00479 Trad_0247 Trad_0265 SM00382 ATPases associated with a variety of cellular activities Trad_0266 SM00220 Serine/Threonine protein kinases, catalytic domain Trad_0267 SM00849 Metallo-beta-lactamase superfamily Trad_0271 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_0271 SM00091 PAS domain Trad_0271 SM00387 Histidine kinase-like ATPases Trad_0273 SM00341 Helicase and RNase D C-terminal Trad_0273 SM00487 DEAD-like helicases superfamily Trad_0273 SM00490 helicase superfamily c-terminal domain Trad_0273 SM00956 Trad_0273 Trad_0289 SM00859 Semialdehyde dehydrogenase, NAD binding domain Trad_0299 SM00862 Transcriptional regulatory protein, C terminal Trad_0300 SM00487 DEAD-like helicases superfamily Trad_0300 SM00490 helicase superfamily c-terminal domain Trad_0304 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Trad_0310 SM00382 ATPases associated with a variety of cellular activities Trad_0323 SM00072 Guanylate kinase homologues. Trad_0324 SM01409 Trad_0324 Trad_0327 SM00028 Tetratricopeptide repeats Trad_0328 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Trad_0329 SM00855 Phosphoglycerate mutase family Trad_0330 SM01118 Trad_0330 Trad_0341 SM00845 GatB domain Trad_0345 SM00382 ATPases associated with a variety of cellular activities Trad_0349 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Trad_0359 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_0359 SM00924 MgtE intracellular N domain Trad_0362 SM00421 helix_turn_helix, Lux Regulon Trad_0365 SM00331 Sigma factor PP2C-like phosphatases Trad_0365 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Trad_0369 SM01234 Trad_0369 Trad_0371 SM00393 Putative single-stranded nucleic acids-binding domain Trad_0377 SM00855 Phosphoglycerate mutase family Trad_0387 SM00729 Elongator protein 3, MiaB family, Radical SAM Trad_0390 SM00487 DEAD-like helicases superfamily Trad_0390 SM00490 helicase superfamily c-terminal domain Trad_0400 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_0402 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_0405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trad_0407 SM00849 Metallo-beta-lactamase superfamily Trad_0411 SM00028 Tetratricopeptide repeats Trad_0419 SM00382 ATPases associated with a variety of cellular activities Trad_0424 SM00530 Helix-turn-helix XRE-family like proteins Trad_0440 SM00028 Tetratricopeptide repeats Trad_0444 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_0452 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_0459 SM00382 ATPases associated with a variety of cellular activities Trad_0459 SM00464 Found in ATP-dependent protease La (LON) Trad_0460 SM00836 DALR anticodon binding domain Trad_0460 SM01016 Arginyl tRNA synthetase N terminal dom Trad_0462 SM00327 von Willebrand factor (vWF) type A domain Trad_0464 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trad_0469 SM00872 Alpha mannosidase, middle domain Trad_0476 SM00028 Tetratricopeptide repeats Trad_0477 SM00382 ATPases associated with a variety of cellular activities Trad_0483 SM00316 Ribosomal protein S1-like RNA-binding domain Trad_0483 SM00357 Cold shock protein domain Trad_0483 SM00955 Trad_0483 Trad_0485 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Trad_0487 SM00363 S4 RNA-binding domain Trad_0497 SM00612 Trad_0497 Trad_0505 SM00382 ATPases associated with a variety of cellular activities Trad_0506 SM00382 ATPases associated with a variety of cellular activities Trad_0512 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_0516 SM01043 Bacterial transcriptional activator domain Trad_0536 SM00829 Enoylreductase Trad_0538 SM00506 Appr-1"-p processing enzyme Trad_0542 SM01321 Trad_0542 Trad_0547 SM01321 Trad_0547 Trad_0550 SM00849 Metallo-beta-lactamase superfamily Trad_0551 SM00220 Serine/Threonine protein kinases, catalytic domain Trad_0553 SM00382 ATPases associated with a variety of cellular activities Trad_0557 SM00098 Alkaline phosphatase homologues Trad_0560 SM01207 Trad_0560 Trad_0569 SM00382 ATPases associated with a variety of cellular activities Trad_0570 SM00382 ATPases associated with a variety of cellular activities Trad_0576 SM00834 Putative regulatory protein Trad_0578 SM00382 ATPases associated with a variety of cellular activities Trad_0584 SM00487 DEAD-like helicases superfamily Trad_0584 SM00490 helicase superfamily c-terminal domain Trad_0585 SM00448 cheY-homologous receiver domain Trad_0589 SM00564 beta-propeller repeat Trad_0592 SM00382 ATPases associated with a variety of cellular activities Trad_0592 SM00994 ClpX C4-type zinc finger Trad_0592 SM01086 C-terminal, D2-small domain, of ClpB protein Trad_0598 SM00491 Trad_0598 Trad_0600 SM00382 ATPases associated with a variety of cellular activities Trad_0605 SM00867 YceI-like domain Trad_0608 SM00421 helix_turn_helix, Lux Regulon Trad_0611 SM01321 Trad_0611 Trad_0619 SM00382 ATPases associated with a variety of cellular activities Trad_0621 SM01130 Trad_0621 Trad_0624 SM00400 zinc finger Trad_0624 SM00493 Trad_0624 Trad_0627 SM00382 ATPases associated with a variety of cellular activities Trad_0633 SM01321 Trad_0633 Trad_0638 SM00382 ATPases associated with a variety of cellular activities Trad_0639 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_0639 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_0645 SM00937 Trad_0645 Trad_0652 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_0652 SM00091 PAS domain Trad_0652 SM00421 helix_turn_helix, Lux Regulon Trad_0664 SM00354 helix_turn _helix lactose operon repressor Trad_0673 SM00855 Phosphoglycerate mutase family Trad_0674 SM00855 Phosphoglycerate mutase family Trad_0679 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_0679 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_0681 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_0685 SM01207 Trad_0685 Trad_0687 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trad_0687 SM00387 Histidine kinase-like ATPases Trad_0687 SM00388 His Kinase A (phosphoacceptor) domain Trad_0690 SM00382 ATPases associated with a variety of cellular activities Trad_0691 SM00091 PAS domain Trad_0691 SM00421 helix_turn_helix, Lux Regulon Trad_0696 SM00382 ATPases associated with a variety of cellular activities Trad_0698 SM01321 Trad_0698 Trad_0717 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trad_0723 SM00822 Trad_0723 Trad_0729 SM00091 PAS domain Trad_0729 SM00421 helix_turn_helix, Lux Regulon Trad_0740 SM00788 Adenylosuccinate synthetase Trad_0741 SM00422 helix_turn_helix, mercury resistance Trad_0741 SM00871 Bacterial transcription activator, effector binding domain Trad_0747 SM00861 Transketolase, pyrimidine binding domain Trad_0750 SM00421 helix_turn_helix, Lux Regulon Trad_0753 SM00382 ATPases associated with a variety of cellular activities Trad_0761 SM00478 endonuclease III Trad_0764 SM00052 Putative diguanylate phosphodiesterase Trad_0764 SM00267 diguanylate cyclase Trad_0765 SM00257 Lysin motif Trad_0768 SM00382 ATPases associated with a variety of cellular activities Trad_0773 SM00382 ATPases associated with a variety of cellular activities Trad_0774 SM00382 ATPases associated with a variety of cellular activities Trad_0777 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_0780 SM00831 Cation transporter/ATPase, N-terminus Trad_0786 SM00267 diguanylate cyclase Trad_0791 SM00448 cheY-homologous receiver domain Trad_0791 SM00862 Transcriptional regulatory protein, C terminal Trad_0805 SM00421 helix_turn_helix, Lux Regulon Trad_0808 SM00382 ATPases associated with a variety of cellular activities Trad_0812 SM00957 SecA DEAD-like domain Trad_0812 SM00958 SecA preprotein cross-linking domain Trad_0814 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Trad_0817 SM01120 Trad_0817 Trad_0817 SM01121 Trad_0817 Trad_0823 SM00014 Acid phosphatase homologues Trad_0825 SM00382 ATPases associated with a variety of cellular activities Trad_0827 SM00460 Transglutaminase/protease-like homologues Trad_0830 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Trad_0830 SM00534 ATPase domain of DNA mismatch repair MUTS family Trad_0831 SM00853 MutL C terminal dimerisation domain Trad_0831 SM01340 Trad_0831 Trad_0835 SM01133 Trad_0835 Trad_0852 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_0852 SM00924 MgtE intracellular N domain Trad_0854 SM00833 Cobalamin synthesis protein cobW C-terminal domain Trad_0858 SM00382 ATPases associated with a variety of cellular activities Trad_0881 SM00448 cheY-homologous receiver domain Trad_0881 SM00862 Transcriptional regulatory protein, C terminal Trad_0882 SM00387 Histidine kinase-like ATPases Trad_0882 SM00388 His Kinase A (phosphoacceptor) domain Trad_0896 SM00612 Trad_0896 Trad_0897 SM00861 Transketolase, pyrimidine binding domain Trad_0900 SM00014 Acid phosphatase homologues Trad_0917 SM00346 helix_turn_helix isocitrate lyase regulation Trad_0922 SM00382 ATPases associated with a variety of cellular activities Trad_0928 SM00530 Helix-turn-helix XRE-family like proteins Trad_0934 SM00028 Tetratricopeptide repeats Trad_0934 SM01043 Bacterial transcriptional activator domain Trad_0937 SM01321 Trad_0937 Trad_0946 SM00354 helix_turn _helix lactose operon repressor Trad_0967 SM00342 helix_turn_helix, arabinose operon control protein Trad_0968 SM00642 Alpha-amylase domain Trad_0970 SM01230 Trad_0970 Trad_0974 SM00382 ATPases associated with a variety of cellular activities Trad_0975 SM00382 ATPases associated with a variety of cellular activities Trad_0978 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Trad_0978 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. Trad_0980 SM00612 Trad_0980 Trad_0990 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_0991 SM00420 helix_turn_helix, Deoxyribose operon repressor Trad_0991 SM01134 Trad_0991 Trad_0993 SM00382 ATPases associated with a variety of cellular activities Trad_1011 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_1011 SM00954 Region found in RelA / SpoT proteins Trad_1012 SM00382 ATPases associated with a variety of cellular activities Trad_1013 SM00382 ATPases associated with a variety of cellular activities Trad_1016 SM00382 ATPases associated with a variety of cellular activities Trad_1029 SM01001 AIR carboxylase Trad_1031 SM00642 Alpha-amylase domain Trad_1035 SM00838 Elongation factor G C-terminus Trad_1035 SM00889 Elongation factor G, domain IV Trad_1037 SM01403 Trad_1037 Trad_1041 SM01382 Trad_1041 Trad_1041 SM01383 Trad_1041 Trad_1044 SM00322 K homology RNA-binding domain Trad_1048 SM01374 Trad_1048 Trad_1049 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Trad_1065 SM00363 S4 RNA-binding domain Trad_1065 SM01390 Trad_1065 Trad_1066 SM00662 RNA polymerases D Trad_1070 SM00382 ATPases associated with a variety of cellular activities Trad_1075 SM00421 helix_turn_helix, Lux Regulon Trad_1076 SM00977 TilS substrate C-terminal domain Trad_1090 SM00450 Rhodanese Homology Domain Trad_1094 SM00028 Tetratricopeptide repeats Trad_1114 SM00841 Elongation factor P, C-terminal Trad_1114 SM01185 Trad_1114 Trad_1116 SM00878 Biotin carboxylase C-terminal domain Trad_1121 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_1124 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_1132 SM00347 helix_turn_helix multiple antibiotic resistance protein Trad_1143 SM00382 ATPases associated with a variety of cellular activities Trad_1156 SM00382 ATPases associated with a variety of cellular activities Trad_1168 SM00382 ATPases associated with a variety of cellular activities Trad_1180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_1184 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trad_1194 SM01321 Trad_1194 Trad_1198 SM00487 DEAD-like helicases superfamily Trad_1198 SM00490 helicase superfamily c-terminal domain Trad_1205 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Trad_1210 SM01043 Bacterial transcriptional activator domain Trad_1226 SM00849 Metallo-beta-lactamase superfamily Trad_1234 SM00382 ATPases associated with a variety of cellular activities Trad_1237 SM00420 helix_turn_helix, Deoxyribose operon repressor Trad_1237 SM01134 Trad_1237 Trad_1239 SM00450 Rhodanese Homology Domain Trad_1240 SM00947 Carbonic anhydrase Trad_1242 SM00450 Rhodanese Homology Domain Trad_1242 SM00849 Metallo-beta-lactamase superfamily Trad_1247 SM00382 ATPases associated with a variety of cellular activities Trad_1251 SM00612 Trad_1251 Trad_1252 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_1256 SM00028 Tetratricopeptide repeats Trad_1256 SM01043 Bacterial transcriptional activator domain Trad_1258 SM00881 CoA binding domain Trad_1265 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Trad_1275 SM00986 Uracil DNA glycosylase superfamily Trad_1275 SM00987 UreE urease accessory protein, C-terminal domain Trad_1282 SM00382 ATPases associated with a variety of cellular activities Trad_1282 SM00962 SRP54-type protein, GTPase domain Trad_1288 SM00855 Phosphoglycerate mutase family Trad_1290 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_1290 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_1291 SM00382 ATPases associated with a variety of cellular activities Trad_1299 SM00382 ATPases associated with a variety of cellular activities Trad_1308 SM00838 Elongation factor G C-terminus Trad_1315 SM00530 Helix-turn-helix XRE-family like proteins Trad_1320 SM00903 Flavin reductase like domain Trad_1323 SM00382 ATPases associated with a variety of cellular activities Trad_1334 SM00842 Cell division protein FtsA Trad_1336 SM00382 ATPases associated with a variety of cellular activities Trad_1338 SM01207 Trad_1338 Trad_1347 SM00316 Ribosomal protein S1-like RNA-binding domain Trad_1353 SM00873 B3/4 domain Trad_1353 SM00874 tRNA synthetase B5 domain Trad_1353 SM00896 Ferredoxin-fold anticodon binding domain Trad_1358 SM00028 Tetratricopeptide repeats Trad_1359 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trad_1359 SM00245 tail specific protease Trad_1363 SM00862 Transcriptional regulatory protein, C terminal Trad_1373 SM00387 Histidine kinase-like ATPases Trad_1373 SM00433 TopoisomeraseII Trad_1381 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_1381 SM01240 Trad_1381 Trad_1385 SM00478 endonuclease III Trad_1385 SM00525 Trad_1385 Trad_1395 SM00859 Semialdehyde dehydrogenase, NAD binding domain Trad_1405 SM00046 Diacylglycerol kinase catalytic domain (presumed) Trad_1407 SM00822 Trad_1407 Trad_1408 SM00271 DnaJ molecular chaperone homology domain Trad_1409 SM00422 helix_turn_helix, mercury resistance Trad_1412 SM00344 helix_turn_helix ASNC type Trad_1416 SM00382 ATPases associated with a variety of cellular activities Trad_1420 SM00642 Alpha-amylase domain Trad_1421 SM00642 Alpha-amylase domain Trad_1422 SM00829 Enoylreductase Trad_1424 SM01321 Trad_1424 Trad_1432 SM00530 Helix-turn-helix XRE-family like proteins Trad_1435 SM00363 S4 RNA-binding domain Trad_1442 SM00642 Alpha-amylase domain Trad_1458 SM00052 Putative diguanylate phosphodiesterase Trad_1464 SM00905 Dihydroneopterin aldolase Trad_1470 SM00382 ATPases associated with a variety of cellular activities Trad_1476 SM00052 Putative diguanylate phosphodiesterase Trad_1476 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_1476 SM00091 PAS domain Trad_1476 SM00267 diguanylate cyclase Trad_1476 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trad_1485 SM00382 ATPases associated with a variety of cellular activities Trad_1487 SM00354 helix_turn _helix lactose operon repressor Trad_1488 SM01007 Class II Aldolase and Adducin N-terminal domain Trad_1491 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_1491 SM00091 PAS domain Trad_1491 SM00387 Histidine kinase-like ATPases Trad_1492 SM00421 helix_turn_helix, Lux Regulon Trad_1492 SM00448 cheY-homologous receiver domain Trad_1501 SM00450 Rhodanese Homology Domain Trad_1510 SM01092 CO dehydrogenase flavoprotein C-terminal domain Trad_1511 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Trad_1515 SM00740 Trad_1515 Trad_1520 SM00880 Trad_1520 Trad_1522 SM00479 Trad_1522 Trad_1523 SM01350 Trad_1523 Trad_1524 SM00052 Putative diguanylate phosphodiesterase Trad_1524 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_1524 SM00267 diguanylate cyclase Trad_1527 SM00796 Allophanate hydrolase subunit 1 Trad_1527 SM00797 Allophanate hydrolase subunit 2 Trad_1533 SM00382 ATPases associated with a variety of cellular activities Trad_1539 SM00829 Enoylreductase Trad_1542 SM00028 Tetratricopeptide repeats Trad_1544 SM00421 helix_turn_helix, Lux Regulon Trad_1544 SM00448 cheY-homologous receiver domain Trad_1546 SM00968 SMC proteins Flexible Hinge Domain Trad_1555 SM01211 Trad_1555 Trad_1559 SM00822 Trad_1559 Trad_1563 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_1563 SM00091 PAS domain Trad_1563 SM00421 helix_turn_helix, Lux Regulon Trad_1566 SM00382 ATPases associated with a variety of cellular activities Trad_1572 SM00382 ATPases associated with a variety of cellular activities Trad_1577 SM00507 HNH nucleases Trad_1583 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trad_1589 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trad_1589 SM00387 Histidine kinase-like ATPases Trad_1589 SM00388 His Kinase A (phosphoacceptor) domain Trad_1590 SM00448 cheY-homologous receiver domain Trad_1590 SM00862 Transcriptional regulatory protein, C terminal Trad_1596 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trad_1596 SM00292 breast cancer carboxy-terminal domain Trad_1596 SM00532 Ligase N family Trad_1610 SM00842 Cell division protein FtsA Trad_1611 SM00864 Tubulin/FtsZ family, GTPase domain Trad_1611 SM00865 Tubulin/FtsZ family, C-terminal domain Trad_1613 SM00904 Riboflavin kinase Trad_1614 SM00967 RNA 2'-O ribose methyltransferase substrate binding Trad_1621 SM01387 Trad_1621 Trad_1622 SM00316 Ribosomal protein S1-like RNA-binding domain Trad_1622 SM00322 K homology RNA-binding domain Trad_1623 SM00849 Metallo-beta-lactamase superfamily Trad_1628 SM00422 helix_turn_helix, mercury resistance Trad_1633 SM01329 Trad_1633 Trad_1638 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Trad_1647 SM00840 Trad_1647 Trad_1649 SM00642 Alpha-amylase domain Trad_1652 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_1659 SM00487 DEAD-like helicases superfamily Trad_1674 SM01007 Class II Aldolase and Adducin N-terminal domain Trad_1675 SM00822 Trad_1675 Trad_1695 SM00382 ATPases associated with a variety of cellular activities Trad_1712 SM01007 Class II Aldolase and Adducin N-terminal domain Trad_1727 SM00354 helix_turn _helix lactose operon repressor Trad_1733 SM00849 Metallo-beta-lactamase superfamily Trad_1737 SM00382 ATPases associated with a variety of cellular activities Trad_1758 SM00028 Tetratricopeptide repeats Trad_1758 SM00267 diguanylate cyclase Trad_1759 SM00870 Trad_1759 Trad_1776 SM00235 Zinc-dependent metalloprotease Trad_1779 SM00382 ATPases associated with a variety of cellular activities Trad_1782 SM00421 helix_turn_helix, Lux Regulon Trad_1782 SM00448 cheY-homologous receiver domain Trad_1793 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_1796 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_1796 SM00091 PAS domain Trad_1796 SM00387 Histidine kinase-like ATPases Trad_1819 SM01133 Trad_1819 Trad_1827 SM00354 helix_turn _helix lactose operon repressor Trad_1833 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trad_1833 SM00895 Trad_1833 Trad_1837 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Trad_1849 SM00382 ATPases associated with a variety of cellular activities Trad_1850 SM00382 ATPases associated with a variety of cellular activities Trad_1867 SM00986 Uracil DNA glycosylase superfamily Trad_1867 SM00987 UreE urease accessory protein, C-terminal domain Trad_1876 SM01321 Trad_1876 Trad_1883 SM00382 ATPases associated with a variety of cellular activities Trad_1884 SM00382 ATPases associated with a variety of cellular activities Trad_1893 SM01130 Trad_1893 Trad_1901 SM00382 ATPases associated with a variety of cellular activities Trad_1908 SM00382 ATPases associated with a variety of cellular activities Trad_1911 SM00382 ATPases associated with a variety of cellular activities Trad_1922 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Trad_1924 SM00732 Likely ribonuclease with RNase H fold. Trad_1931 SM00434 DNA Topoisomerase IV Trad_1938 SM00830 Chorismate mutase type II Trad_1945 SM00487 DEAD-like helicases superfamily Trad_1945 SM00490 helicase superfamily c-terminal domain Trad_1952 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Trad_1958 SM00028 Tetratricopeptide repeats Trad_1959 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_1959 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_1961 SM00831 Cation transporter/ATPase, N-terminus Trad_1969 SM01350 Trad_1969 Trad_1974 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trad_1974 SM00465 GIY-YIG type nucleases (URI domain) Trad_1980 SM00354 helix_turn _helix lactose operon repressor Trad_1982 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_1982 SM00267 diguanylate cyclase Trad_1982 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_1991 SM00382 ATPases associated with a variety of cellular activities Trad_1995 SM00460 Transglutaminase/protease-like homologues Trad_1996 SM00460 Transglutaminase/protease-like homologues Trad_2003 SM00257 Lysin motif Trad_2004 SM00487 DEAD-like helicases superfamily Trad_2004 SM00490 helicase superfamily c-terminal domain Trad_2010 SM00729 Elongator protein 3, MiaB family, Radical SAM Trad_2012 SM00382 ATPases associated with a variety of cellular activities Trad_2015 SM00062 Bacterial periplasmic substrate-binding proteins Trad_2025 SM00220 Serine/Threonine protein kinases, catalytic domain Trad_2036 SM00354 helix_turn _helix lactose operon repressor Trad_2053 SM00363 S4 RNA-binding domain Trad_2060 SM00642 Alpha-amylase domain Trad_2061 SM00347 helix_turn_helix multiple antibiotic resistance protein Trad_2065 SM00387 Histidine kinase-like ATPases Trad_2065 SM00388 His Kinase A (phosphoacceptor) domain Trad_2066 SM00448 cheY-homologous receiver domain Trad_2066 SM00862 Transcriptional regulatory protein, C terminal Trad_2074 SM00382 ATPases associated with a variety of cellular activities Trad_2074 SM01086 C-terminal, D2-small domain, of ClpB protein Trad_2075 SM00838 Elongation factor G C-terminus Trad_2077 SM00855 Phosphoglycerate mutase family Trad_2078 SM00642 Alpha-amylase domain Trad_2079 SM00642 Alpha-amylase domain Trad_2085 SM00729 Elongator protein 3, MiaB family, Radical SAM Trad_2088 SM00357 Cold shock protein domain Trad_2097 SM00633 Glycosyl hydrolase family 10 Trad_2103 SM00606 Cellulose Binding Domain Type IV Trad_2103 SM00633 Glycosyl hydrolase family 10 Trad_2104 SM00354 helix_turn _helix lactose operon repressor Trad_2113 SM00487 DEAD-like helicases superfamily Trad_2113 SM00490 helicase superfamily c-terminal domain Trad_2117 SM00829 Enoylreductase Trad_2125 SM00357 Cold shock protein domain Trad_2127 SM00382 ATPases associated with a variety of cellular activities Trad_2139 SM00518 AP endonuclease family 2 Trad_2148 SM00852 Probable molybdopterin binding domain Trad_2149 SM00382 ATPases associated with a variety of cellular activities Trad_2150 SM00322 K homology RNA-binding domain Trad_2150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_2151 SM01400 Trad_2151 Trad_2154 SM00226 Low molecular weight phosphatase family Trad_2156 SM00226 Low molecular weight phosphatase family Trad_2157 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trad_2170 SM00450 Rhodanese Homology Domain Trad_2172 SM00967 RNA 2'-O ribose methyltransferase substrate binding Trad_2180 SM00382 ATPases associated with a variety of cellular activities Trad_2181 SM00829 Enoylreductase Trad_2185 SM00822 Trad_2185 Trad_2186 SM00829 Enoylreductase Trad_2208 SM01329 Trad_2208 Trad_2210 SM00852 Probable molybdopterin binding domain Trad_2213 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Trad_2216 SM00382 ATPases associated with a variety of cellular activities Trad_2216 SM01086 C-terminal, D2-small domain, of ClpB protein Trad_2217 SM00382 ATPases associated with a variety of cellular activities Trad_2225 SM00952 Trad_2225 Trad_2243 SM00563 Phosphate acyltransferases Trad_2250 SM00822 Trad_2250 Trad_2252 SM01021 Bacteriorhodopsin-like protein Trad_2256 SM00382 ATPases associated with a variety of cellular activities Trad_2260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_2262 SM00220 Serine/Threonine protein kinases, catalytic domain Trad_2270 SM00822 Trad_2270 Trad_2273 SM00382 ATPases associated with a variety of cellular activities Trad_2290 SM00382 ATPases associated with a variety of cellular activities Trad_2291 SM00382 ATPases associated with a variety of cellular activities Trad_2295 SM00382 ATPases associated with a variety of cellular activities Trad_2306 SM01101 Trad_2306 Trad_2312 SM00490 helicase superfamily c-terminal domain Trad_2314 SM00257 Lysin motif Trad_2315 SM00357 Cold shock protein domain Trad_2315 SM00382 ATPases associated with a variety of cellular activities Trad_2315 SM00959 Rho termination factor, N-terminal domain Trad_2318 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Trad_2339 SM00382 ATPases associated with a variety of cellular activities Trad_2343 SM00382 ATPases associated with a variety of cellular activities Trad_2349 SM00382 ATPases associated with a variety of cellular activities Trad_2350 SM00382 ATPases associated with a variety of cellular activities Trad_2351 SM00382 ATPases associated with a variety of cellular activities Trad_2353 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Trad_2353 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Trad_2353 SM00481 DNA polymerase alpha chain like domain Trad_2355 SM00271 DnaJ molecular chaperone homology domain Trad_2356 SM00382 ATPases associated with a variety of cellular activities Trad_2361 SM00382 ATPases associated with a variety of cellular activities Trad_2368 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Trad_2368 SM00475 5'-3' exonuclease Trad_2368 SM00482 DNA polymerase A domain Trad_2373 SM00382 ATPases associated with a variety of cellular activities Trad_2376 SM00493 Trad_2376 Trad_2377 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Trad_2377 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Trad_2377 SM00493 Trad_2377 Trad_2379 SM00382 ATPases associated with a variety of cellular activities Trad_2387 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_2387 SM00267 diguanylate cyclase Trad_2387 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trad_2388 SM00344 helix_turn_helix ASNC type Trad_2390 SM00318 Staphylococcal nuclease homologues Trad_2391 SM00852 Probable molybdopterin binding domain Trad_2396 SM00347 helix_turn_helix multiple antibiotic resistance protein Trad_2402 SM00046 Diacylglycerol kinase catalytic domain (presumed) Trad_2406 SM00938 Nitrogen regulatory protein P-II Trad_2407 SM00729 Elongator protein 3, MiaB family, Radical SAM Trad_2409 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Trad_2412 SM01321 Trad_2412 Trad_2415 SM00344 helix_turn_helix ASNC type Trad_2435 SM00062 Bacterial periplasmic substrate-binding proteins Trad_2435 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Trad_2439 SM01005 Alanine racemase, C-terminal domain Trad_2447 SM00448 cheY-homologous receiver domain Trad_2447 SM00862 Transcriptional regulatory protein, C terminal Trad_2447 SM01043 Bacterial transcriptional activator domain Trad_2452 SM00998 Adenylosuccinate lyase C-terminus Trad_2455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_2469 SM00382 ATPases associated with a variety of cellular activities Trad_2473 SM01058 CarD-like/TRCF domain Trad_2475 SM00663 RNA polymerase I subunit A N-terminus Trad_2480 SM00649 Ribosomal protein L11/L12 Trad_2481 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Trad_2481 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Trad_2485 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trad_2485 SM00481 DNA polymerase alpha chain like domain Trad_2485 SM00483 DNA polymerase X family Trad_2488 SM00387 Histidine kinase-like ATPases Trad_2488 SM00388 His Kinase A (phosphoacceptor) domain Trad_2489 SM00448 cheY-homologous receiver domain Trad_2489 SM00862 Transcriptional regulatory protein, C terminal Trad_2497 SM00530 Helix-turn-helix XRE-family like proteins Trad_2499 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Trad_2499 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Trad_2501 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trad_2502 SM00463 Small MutS-related domain Trad_2502 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Trad_2502 SM00534 ATPase domain of DNA mismatch repair MUTS family Trad_2508 SM00421 helix_turn_helix, Lux Regulon Trad_2508 SM00448 cheY-homologous receiver domain Trad_2519 SM01018 B12 binding domain Trad_2524 SM00421 helix_turn_helix, Lux Regulon Trad_2529 SM00822 Trad_2529 Trad_2540 SM00382 ATPases associated with a variety of cellular activities Trad_2543 SM00487 DEAD-like helicases superfamily Trad_2543 SM00490 helicase superfamily c-terminal domain Trad_2545 SM01058 CarD-like/TRCF domain Trad_2546 SM00650 Ribosomal RNA adenine dimethylases Trad_2548 SM00245 tail specific protease Trad_2549 SM00849 Metallo-beta-lactamase superfamily Trad_2556 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_2560 SM00861 Transketolase, pyrimidine binding domain Trad_2563 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trad_2569 SM00267 diguanylate cyclase Trad_2569 SM00421 helix_turn_helix, Lux Regulon Trad_2571 SM00822 Trad_2571 Trad_2582 SM00946 Prolyl-tRNA synthetase, C-terminal Trad_2591 SM00316 Ribosomal protein S1-like RNA-binding domain Trad_2599 SM01209 Trad_2599 Trad_2599 SM01210 Trad_2599 Trad_2602 SM00861 Transketolase, pyrimidine binding domain Trad_2603 SM00464 Found in ATP-dependent protease La (LON) Trad_2605 SM00327 von Willebrand factor (vWF) type A domain Trad_2606 SM00387 Histidine kinase-like ATPases Trad_2606 SM00388 His Kinase A (phosphoacceptor) domain Trad_2613 SM00849 Metallo-beta-lactamase superfamily Trad_2614 SM00382 ATPases associated with a variety of cellular activities Trad_2615 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Trad_2617 SM00518 AP endonuclease family 2 Trad_2623 SM00881 CoA binding domain Trad_2626 SM00052 Putative diguanylate phosphodiesterase Trad_2626 SM00267 diguanylate cyclase Trad_2636 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Trad_2638 SM01150 Trad_2638 Trad_2646 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Trad_2649 SM00903 Flavin reductase like domain Trad_2663 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_2663 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_2664 SM00422 helix_turn_helix, mercury resistance Trad_2668 SM00421 helix_turn_helix, Lux Regulon Trad_2668 SM00448 cheY-homologous receiver domain Trad_2670 SM00358 Double-stranded RNA binding motif Trad_2673 SM00100 Cyclic nucleotide-monophosphate binding domain Trad_2673 SM00419 helix_turn_helix, cAMP Regulatory protein Trad_2687 SM00642 Alpha-amylase domain Trad_2696 SM00849 Metallo-beta-lactamase superfamily Trad_2699 SM00478 endonuclease III Trad_2700 SM00822 Trad_2700 Trad_2701 SM01321 Trad_2701 Trad_2702 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Trad_2704 SM00529 Helix-turn-helix diphteria tox regulatory element Trad_2704 SM00899 Trad_2704 Trad_2711 SM00487 DEAD-like helicases superfamily Trad_2711 SM00490 helicase superfamily c-terminal domain Trad_2727 SM00881 CoA binding domain Trad_2729 SM00028 Tetratricopeptide repeats Trad_2733 SM00382 ATPases associated with a variety of cellular activities Trad_2734 SM00740 Trad_2734 Trad_2752 SM00382 ATPases associated with a variety of cellular activities Trad_2754 SM00563 Phosphate acyltransferases Trad_2755 SM00411 bacterial (prokaryotic) histone like domain Trad_2763 SM00829 Enoylreductase Trad_2768 SM00729 Elongator protein 3, MiaB family, Radical SAM Trad_2770 SM00448 cheY-homologous receiver domain Trad_2773 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_2773 SM00091 PAS domain Trad_2773 SM00387 Histidine kinase-like ATPases Trad_2775 SM00822 Trad_2775 Trad_2783 SM00028 Tetratricopeptide repeats Trad_2792 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Trad_2793 SM00822 Trad_2793 Trad_2794 SM00823 Phosphopantetheine attachment site Trad_2795 SM00825 Beta-ketoacyl synthase Trad_2800 SM00382 ATPases associated with a variety of cellular activities Trad_2825 SM00116 Domain in cystathionine beta-synthase and other proteins. Trad_2825 SM01091 Transporter associated domain Trad_2832 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Trad_2833 SM00232 JAB/MPN domain Trad_2841 SM01329 Trad_2841 Trad_2846 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trad_2851 SM00646 Trad_2851 Trad_2856 SM00984 UDP binding domain Trad_2874 SM00382 ATPases associated with a variety of cellular activities Trad_2874 SM00843 Trad_2874 Trad_2880 SM00354 helix_turn _helix lactose operon repressor Trad_2888 SM00829 Enoylreductase Trad_2890 SM00354 helix_turn _helix lactose operon repressor Trad_2895 SM00829 Enoylreductase Trad_2898 SM00052 Putative diguanylate phosphodiesterase Trad_2898 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trad_2898 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Trad_2898 SM00091 PAS domain Trad_2898 SM00267 diguanylate cyclase Trad_2899 SM00028 Tetratricopeptide repeats Trad_2905 SM00478 endonuclease III Trad_2908 SM01021 Bacteriorhodopsin-like protein Trad_2921 SM00903 Flavin reductase like domain Trad_2929 SM00883 Chaperonin 10 Kd subunit Trad_2932 SM00845 GatB domain Trad_2933 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trad_2935 SM00387 Histidine kinase-like ATPases Trad_2935 SM00388 His Kinase A (phosphoacceptor) domain Trad_2944 SM01021 Bacteriorhodopsin-like protein Trad_2961 SM00642 Alpha-amylase domain Trad_2963 SM01007 Class II Aldolase and Adducin N-terminal domain Trad_2968 SM00420 helix_turn_helix, Deoxyribose operon repressor Trad_2968 SM01134 Trad_2968 Trad_2972 SM00562 Trad_2972 Trad_2973 SM00450 Rhodanese Homology Domain Trad_2981 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Trad_2982 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Trad_2991 SM00470 ParB-like nuclease domain Trad_2994 SM01228 Trad_2994