CQ11_00040	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CQ11_00040	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CQ11_00040	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CQ11_00050	PWY-6898	thiamin salvage III
CQ11_00050	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CQ11_00050	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CQ11_00050	PWY-7356	thiamin salvage IV (yeast)
CQ11_00100	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CQ11_00150	PWY-622	starch biosynthesis
CQ11_00150	PWY-7902	CQ11_00150
CQ11_00155	PWY-7900	CQ11_00155
CQ11_00230	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_00240	PWY-6840	homoglutathione biosynthesis
CQ11_00240	PWY-7255	ergothioneine biosynthesis I (bacteria)
CQ11_00255	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CQ11_00270	PWY-6829	tRNA methylation (yeast)
CQ11_00280	PWY-7893	CQ11_00280
CQ11_00290	PWY-7893	CQ11_00290
CQ11_00325	PWY-1042	glycolysis IV (plant cytosol)
CQ11_00325	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CQ11_00325	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_00325	PWY-5723	Rubisco shunt
CQ11_00325	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CQ11_00325	PWY-6886	1-butanol autotrophic biosynthesis
CQ11_00325	PWY-6901	superpathway of glucose and xylose degradation
CQ11_00325	PWY-7003	glycerol degradation to butanol
CQ11_00325	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CQ11_00325	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_00370	PWY-7942	CQ11_00370
CQ11_00375	PWY-7851	CQ11_00375
CQ11_00425	PWY-1042	glycolysis IV (plant cytosol)
CQ11_00425	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_00425	PWY-6901	superpathway of glucose and xylose degradation
CQ11_00425	PWY-7003	glycerol degradation to butanol
CQ11_00430	PWY-1042	glycolysis IV (plant cytosol)
CQ11_00430	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_00430	PWY-6886	1-butanol autotrophic biosynthesis
CQ11_00430	PWY-6901	superpathway of glucose and xylose degradation
CQ11_00430	PWY-7003	glycerol degradation to butanol
CQ11_00435	PWY-1042	glycolysis IV (plant cytosol)
CQ11_00435	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_00435	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CQ11_00435	PWY-7003	glycerol degradation to butanol
CQ11_00450	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CQ11_00455	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_00455	PWY-5723	Rubisco shunt
CQ11_00460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_00460	PWY-5723	Rubisco shunt
CQ11_00460	PWY-6891	thiazole biosynthesis II (Bacillus)
CQ11_00460	PWY-6892	thiazole biosynthesis I (E. coli)
CQ11_00460	PWY-6901	superpathway of glucose and xylose degradation
CQ11_00460	PWY-7560	methylerythritol phosphate pathway II
CQ11_00490	PWY-7205	CMP phosphorylation
CQ11_00490	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CQ11_00500	PWY-1042	glycolysis IV (plant cytosol)
CQ11_00500	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_00500	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_00500	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_00600	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_00600	PWY-5723	Rubisco shunt
CQ11_00620	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CQ11_00620	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CQ11_00625	PWY-7851	CQ11_00625
CQ11_00635	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_00650	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CQ11_00650	PWY-5686	UMP biosynthesis
CQ11_00650	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CQ11_00650	PWY-7790	CQ11_00650
CQ11_00650	PWY-7791	CQ11_00650
CQ11_00670	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_00675	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_00675	PWY-6164	3-dehydroquinate biosynthesis I
CQ11_00680	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_00795	PWY-6605	adenine and adenosine salvage II
CQ11_00795	PWY-6610	adenine and adenosine salvage IV
CQ11_00795	PWY-7805	CQ11_00795
CQ11_00795	PWY-7807	CQ11_00795
CQ11_00915	PWY-2661	trehalose biosynthesis V
CQ11_00920	PWY-2661	trehalose biosynthesis V
CQ11_00935	PWY-6891	thiazole biosynthesis II (Bacillus)
CQ11_00935	PWY-6892	thiazole biosynthesis I (E. coli)
CQ11_00935	PWY-7560	methylerythritol phosphate pathway II
CQ11_01070	PWY-6164	3-dehydroquinate biosynthesis I
CQ11_01075	PWY-1042	glycolysis IV (plant cytosol)
CQ11_01075	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_01075	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_01075	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_01095	PWY-6854	ethylene biosynthesis III (microbes)
CQ11_01140	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CQ11_01140	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CQ11_01165	PWY-381	nitrate reduction II (assimilatory)
CQ11_01165	PWY-5675	nitrate reduction V (assimilatory)
CQ11_01165	PWY-6549	L-glutamine biosynthesis III
CQ11_01165	PWY-6963	ammonia assimilation cycle I
CQ11_01165	PWY-6964	ammonia assimilation cycle II
CQ11_01180	PWY-381	nitrate reduction II (assimilatory)
CQ11_01180	PWY-5675	nitrate reduction V (assimilatory)
CQ11_01180	PWY-6549	L-glutamine biosynthesis III
CQ11_01180	PWY-6963	ammonia assimilation cycle I
CQ11_01180	PWY-6964	ammonia assimilation cycle II
CQ11_01190	PWY-7799	CQ11_01190
CQ11_01190	PWY-7800	CQ11_01190
CQ11_01250	PWY-6891	thiazole biosynthesis II (Bacillus)
CQ11_01250	PWY-6892	thiazole biosynthesis I (E. coli)
CQ11_01250	PWY-7560	methylerythritol phosphate pathway II
CQ11_01580	PWY-7884	CQ11_01580
CQ11_01620	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_01620	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CQ11_01620	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_01620	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_01625	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_01625	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CQ11_01625	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_01625	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_01630	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_01630	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_01635	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_01635	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_01635	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_01640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_01640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_01640	PWY-7953	CQ11_01640
CQ11_01735	PWY-2781	<i>cis</i>-zeatin biosynthesis
CQ11_01790	PWY-2941	L-lysine biosynthesis II
CQ11_01790	PWY-2942	L-lysine biosynthesis III
CQ11_01790	PWY-5097	L-lysine biosynthesis VI
CQ11_01805	PWY-2941	L-lysine biosynthesis II
CQ11_01805	PWY-2942	L-lysine biosynthesis III
CQ11_01805	PWY-5097	L-lysine biosynthesis VI
CQ11_01845	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CQ11_01845	PWY-6167	flavin biosynthesis II (archaea)
CQ11_01845	PWY-6168	flavin biosynthesis III (fungi)
CQ11_01845	PWY-7863	CQ11_01845
CQ11_01945	PWY-7560	methylerythritol phosphate pathway II
CQ11_01960	PWY-5667	CDP-diacylglycerol biosynthesis I
CQ11_01960	PWY-5981	CDP-diacylglycerol biosynthesis III
CQ11_01960	PWY-7817	CQ11_01960
CQ11_02075	PWY-6829	tRNA methylation (yeast)
CQ11_02075	PWY-7285	methylwyosine biosynthesis
CQ11_02075	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CQ11_02135	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CQ11_02135	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CQ11_02135	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_02135	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_02135	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CQ11_02135	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_02135	PWY-7205	CMP phosphorylation
CQ11_02135	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_02135	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_02135	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_02135	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_02135	PWY-7224	purine deoxyribonucleosides salvage
CQ11_02135	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_02135	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CQ11_02140	PWY-2161	folate polyglutamylation
CQ11_02160	PWY-3341	L-proline biosynthesis III
CQ11_02160	PWY-4981	L-proline biosynthesis II (from arginine)
CQ11_02160	PWY-6344	L-ornithine degradation II (Stickland reaction)
CQ11_02180	PWY-3461	L-tyrosine biosynthesis II
CQ11_02180	PWY-3462	L-phenylalanine biosynthesis II
CQ11_02180	PWY-6120	L-tyrosine biosynthesis III
CQ11_02180	PWY-6627	salinosporamide A biosynthesis
CQ11_02180	PWY-7626	bacilysin biosynthesis
CQ11_02225	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_02280	PWY-6936	seleno-amino acid biosynthesis
CQ11_02285	PWY-6936	seleno-amino acid biosynthesis
CQ11_02285	PWY-7274	D-cycloserine biosynthesis
CQ11_02285	PWY-7870	CQ11_02285
CQ11_02320	PWY-5941	glycogen degradation II (eukaryotic)
CQ11_02320	PWY-6724	starch degradation II
CQ11_02320	PWY-6737	starch degradation V
CQ11_02320	PWY-7238	sucrose biosynthesis II
CQ11_02445	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_02460	PWY-5480	pyruvate fermentation to ethanol I
CQ11_02460	PWY-5485	pyruvate fermentation to acetate IV
CQ11_02460	PWY-5493	reductive monocarboxylic acid cycle
CQ11_02465	PWY-5057	L-valine degradation II
CQ11_02465	PWY-5076	L-leucine degradation III
CQ11_02465	PWY-5078	L-isoleucine degradation II
CQ11_02465	PWY-5101	L-isoleucine biosynthesis II
CQ11_02465	PWY-5103	L-isoleucine biosynthesis III
CQ11_02465	PWY-5104	L-isoleucine biosynthesis IV
CQ11_02465	PWY-5108	L-isoleucine biosynthesis V
CQ11_02465	PWY-7767	CQ11_02465
CQ11_02480	PWY-5392	reductive TCA cycle II
CQ11_02480	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_02480	PWY-5690	TCA cycle II (plants and fungi)
CQ11_02480	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_02480	PWY-6728	methylaspartate cycle
CQ11_02480	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_02480	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_02480	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CQ11_02490	PWY-5103	L-isoleucine biosynthesis III
CQ11_02490	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CQ11_02495	PWY-5101	L-isoleucine biosynthesis II
CQ11_02495	PWY-5103	L-isoleucine biosynthesis III
CQ11_02495	PWY-5104	L-isoleucine biosynthesis IV
CQ11_02495	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CQ11_02495	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CQ11_02495	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CQ11_02495	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CQ11_02500	PWY-5101	L-isoleucine biosynthesis II
CQ11_02500	PWY-5103	L-isoleucine biosynthesis III
CQ11_02500	PWY-5104	L-isoleucine biosynthesis IV
CQ11_02500	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CQ11_02500	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CQ11_02500	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CQ11_02500	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CQ11_02510	PWY-5101	L-isoleucine biosynthesis II
CQ11_02510	PWY-5103	L-isoleucine biosynthesis III
CQ11_02510	PWY-5104	L-isoleucine biosynthesis IV
CQ11_02510	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CQ11_02585	PWY-3821	galactose degradation III
CQ11_02585	PWY-6317	galactose degradation I (Leloir pathway)
CQ11_02585	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CQ11_02585	PWY-6527	stachyose degradation
CQ11_02585	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CQ11_02585	PWY-7344	UDP-D-galactose biosynthesis
CQ11_02605	PWY-5667	CDP-diacylglycerol biosynthesis I
CQ11_02605	PWY-5981	CDP-diacylglycerol biosynthesis III
CQ11_02605	PWY-7902	CQ11_02605
CQ11_02700	PWY-6871	3-methylbutanol biosynthesis
CQ11_02865	PWY-5659	GDP-mannose biosynthesis
CQ11_02865	PWY-7456	mannan degradation
CQ11_02865	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CQ11_02865	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CQ11_02885	PWY-7199	pyrimidine deoxyribonucleosides salvage
CQ11_02965	PWY-5392	reductive TCA cycle II
CQ11_02965	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_02965	PWY-5690	TCA cycle II (plants and fungi)
CQ11_02965	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_02965	PWY-6728	methylaspartate cycle
CQ11_02965	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_02965	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_02965	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CQ11_03025	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CQ11_03030	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CQ11_03295	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CQ11_03295	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CQ11_03475	PWY-5381	pyridine nucleotide cycling (plants)
CQ11_03475	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CQ11_03475	PWY-7761	CQ11_03475
CQ11_03585	PWY-7851	CQ11_03585
CQ11_03610	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CQ11_03610	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CQ11_03610	PWY-6896	thiamin salvage I
CQ11_03610	PWY-6897	thiamin salvage II
CQ11_03620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_03620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_03620	PWY-7953	CQ11_03620
CQ11_03625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_03625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_03625	PWY-7953	CQ11_03625
CQ11_03710	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CQ11_03770	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_03770	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_03785	PWY-5381	pyridine nucleotide cycling (plants)
CQ11_04025	PWY-4202	arsenate detoxification I (glutaredoxin)
CQ11_04025	PWY-5532	adenosine nucleotides degradation IV
CQ11_04025	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CQ11_04025	PWY-6608	guanosine nucleotides degradation III
CQ11_04025	PWY-6609	adenine and adenosine salvage III
CQ11_04025	PWY-6611	adenine and adenosine salvage V
CQ11_04025	PWY-6620	guanine and guanosine salvage
CQ11_04025	PWY-6627	salinosporamide A biosynthesis
CQ11_04025	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CQ11_04025	PWY-7179	purine deoxyribonucleosides degradation I
CQ11_04025	PWY-7179-1	purine deoxyribonucleosides degradation
CQ11_04030	PWY-6749	CMP-legionaminate biosynthesis I
CQ11_04045	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CQ11_04055	PWY-7181	pyrimidine deoxyribonucleosides degradation
CQ11_04100	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CQ11_04100	PWY-2201	folate transformations I
CQ11_04100	PWY-3841	folate transformations II
CQ11_04100	PWY-5030	L-histidine degradation III
CQ11_04100	PWY-5497	purine nucleobases degradation II (anaerobic)
CQ11_04100	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CQ11_04100	PWY-7909	CQ11_04100
CQ11_04105	PWY-1622	formaldehyde assimilation I (serine pathway)
CQ11_04105	PWY-181	photorespiration
CQ11_04105	PWY-2161	folate polyglutamylation
CQ11_04105	PWY-2201	folate transformations I
CQ11_04105	PWY-3661	glycine betaine degradation I
CQ11_04105	PWY-3661-1	glycine betaine degradation II (mammalian)
CQ11_04105	PWY-3841	folate transformations II
CQ11_04105	PWY-5497	purine nucleobases degradation II (anaerobic)
CQ11_04110	PWY-2201	folate transformations I
CQ11_04110	PWY-5497	purine nucleobases degradation II (anaerobic)
CQ11_04110	PWY-7909	CQ11_04110
CQ11_04120	PWY-6012	acyl carrier protein metabolism I
CQ11_04120	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CQ11_04120	PWY-6289	petrobactin biosynthesis
CQ11_04125	PWY-4381	fatty acid biosynthesis initiation I
CQ11_04125	PWY-5142	acyl-ACP thioesterase pathway
CQ11_04125	PWY-5147	oleate biosynthesis I (plants)
CQ11_04125	PWY-5366	palmitoleate biosynthesis II (plants and bacteria)
CQ11_04125	PWY-5367	petroselinate biosynthesis
CQ11_04125	PWY-5966	fatty acid biosynthesis initiation II
CQ11_04125	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CQ11_04125	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CQ11_04125	PWY-5989	stearate biosynthesis II (bacteria and plants)
CQ11_04125	PWY-5994	palmitate biosynthesis I (animals and fungi)
CQ11_04125	PWY-6113	superpathway of mycolate biosynthesis
CQ11_04125	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CQ11_04125	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CQ11_04125	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CQ11_04125	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CQ11_04125	PWY-7663	gondoate biosynthesis (anaerobic)
CQ11_04125	PWY-7664	oleate biosynthesis IV (anaerobic)
CQ11_04125	PWY-7723	CQ11_04125
CQ11_04125	PWY-7746	CQ11_04125
CQ11_04125	PWY-7858	CQ11_04125
CQ11_04125	PWYG-321	mycolate biosynthesis
CQ11_04130	PWY-4381	fatty acid biosynthesis initiation I
CQ11_04130	PWY-5743	3-hydroxypropanoate cycle
CQ11_04130	PWY-5744	glyoxylate assimilation
CQ11_04130	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CQ11_04130	PWY-6722	candicidin biosynthesis
CQ11_04230	PWY-1622	formaldehyde assimilation I (serine pathway)
CQ11_04230	PWY-5392	reductive TCA cycle II
CQ11_04230	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_04230	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04230	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_04230	PWY-6728	methylaspartate cycle
CQ11_04230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04230	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CQ11_04230	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_04245	PWY-3801	sucrose degradation II (sucrose synthase)
CQ11_04245	PWY-5054	sorbitol biosynthesis I
CQ11_04245	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CQ11_04245	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CQ11_04245	PWY-5659	GDP-mannose biosynthesis
CQ11_04245	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CQ11_04245	PWY-621	sucrose degradation III (sucrose invertase)
CQ11_04245	PWY-622	starch biosynthesis
CQ11_04245	PWY-6981	chitin biosynthesis
CQ11_04245	PWY-6992	1,5-anhydrofructose degradation
CQ11_04245	PWY-7238	sucrose biosynthesis II
CQ11_04245	PWY-7347	sucrose biosynthesis III
CQ11_04245	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_04250	PWY-1042	glycolysis IV (plant cytosol)
CQ11_04250	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_04250	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_04250	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_04260	PWY-6123	inosine-5'-phosphate biosynthesis I
CQ11_04260	PWY-6124	inosine-5'-phosphate biosynthesis II
CQ11_04260	PWY-7234	inosine-5'-phosphate biosynthesis III
CQ11_04275	PWY-5392	reductive TCA cycle II
CQ11_04275	PWY-5537	pyruvate fermentation to acetate V
CQ11_04275	PWY-5538	pyruvate fermentation to acetate VI
CQ11_04275	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04275	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_04275	PWY-6728	methylaspartate cycle
CQ11_04275	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04275	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CQ11_04280	PWY-5392	reductive TCA cycle II
CQ11_04280	PWY-5537	pyruvate fermentation to acetate V
CQ11_04280	PWY-5538	pyruvate fermentation to acetate VI
CQ11_04280	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04280	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_04280	PWY-6728	methylaspartate cycle
CQ11_04280	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04280	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CQ11_04350	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_04360	PWY-1281	sulfoacetaldehyde degradation I
CQ11_04360	PWY-5482	pyruvate fermentation to acetate II
CQ11_04360	PWY-5485	pyruvate fermentation to acetate IV
CQ11_04360	PWY-5497	purine nucleobases degradation II (anaerobic)
CQ11_04360	PWY-6637	sulfolactate degradation II
CQ11_04365	PWY-5482	pyruvate fermentation to acetate II
CQ11_04365	PWY-5485	pyruvate fermentation to acetate IV
CQ11_04365	PWY-5497	purine nucleobases degradation II (anaerobic)
CQ11_04390	PWY-5392	reductive TCA cycle II
CQ11_04390	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_04390	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04390	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_04390	PWY-6728	methylaspartate cycle
CQ11_04390	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04390	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_04390	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CQ11_04405	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CQ11_04405	PWY-6596	adenosine nucleotides degradation I
CQ11_04405	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_04425	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CQ11_04425	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CQ11_04425	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CQ11_04430	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CQ11_04430	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CQ11_04435	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CQ11_04435	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CQ11_04435	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CQ11_04440	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CQ11_04440	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CQ11_04440	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CQ11_04440	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CQ11_04445	PWY-6123	inosine-5'-phosphate biosynthesis I
CQ11_04445	PWY-6124	inosine-5'-phosphate biosynthesis II
CQ11_04445	PWY-7234	inosine-5'-phosphate biosynthesis III
CQ11_04450	PWY-6123	inosine-5'-phosphate biosynthesis I
CQ11_04450	PWY-7234	inosine-5'-phosphate biosynthesis III
CQ11_04490	PWY-3781	aerobic respiration I (cytochrome c)
CQ11_04490	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CQ11_04490	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_04490	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04490	PWY-6728	methylaspartate cycle
CQ11_04490	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04490	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_04490	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CQ11_04495	PWY-3781	aerobic respiration I (cytochrome c)
CQ11_04495	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CQ11_04495	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_04495	PWY-5690	TCA cycle II (plants and fungi)
CQ11_04495	PWY-6728	methylaspartate cycle
CQ11_04495	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_04495	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_04495	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CQ11_04525	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_04530	PWY-6938	NADH repair
CQ11_04535	PWY-6749	CMP-legionaminate biosynthesis I
CQ11_04540	PWY-3961	phosphopantothenate biosynthesis II
CQ11_04545	PWY-6749	CMP-legionaminate biosynthesis I
CQ11_04660	PWY-7799	CQ11_04660
CQ11_04660	PWY-7800	CQ11_04660
CQ11_04665	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_04785	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_04835	PWY-7193	pyrimidine ribonucleosides salvage I
CQ11_04895	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_04895	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_04895	PWY-7953	CQ11_04895
CQ11_05035	PWY-3221	dTDP-L-rhamnose biosynthesis II
CQ11_05035	PWY-6808	dTDP-D-forosamine biosynthesis
CQ11_05035	PWY-6942	dTDP-D-desosamine biosynthesis
CQ11_05035	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CQ11_05035	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CQ11_05035	PWY-6974	dTDP-L-olivose biosynthesis
CQ11_05035	PWY-6976	dTDP-L-mycarose biosynthesis
CQ11_05035	PWY-7104	dTDP-L-megosamine biosynthesis
CQ11_05035	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CQ11_05035	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CQ11_05035	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CQ11_05035	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CQ11_05035	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CQ11_05035	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CQ11_05035	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CQ11_05035	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CQ11_05035	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CQ11_05035	PWY-7688	CQ11_05035
CQ11_05035	PWY-7814	CQ11_05035
CQ11_05155	PWY-3221	dTDP-L-rhamnose biosynthesis II
CQ11_05155	PWY-6808	dTDP-D-forosamine biosynthesis
CQ11_05155	PWY-6942	dTDP-D-desosamine biosynthesis
CQ11_05155	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CQ11_05155	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CQ11_05155	PWY-6974	dTDP-L-olivose biosynthesis
CQ11_05155	PWY-6976	dTDP-L-mycarose biosynthesis
CQ11_05155	PWY-7104	dTDP-L-megosamine biosynthesis
CQ11_05155	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CQ11_05155	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CQ11_05155	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CQ11_05155	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CQ11_05155	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CQ11_05155	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CQ11_05155	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CQ11_05155	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CQ11_05155	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CQ11_05155	PWY-7688	CQ11_05155
CQ11_05155	PWY-7814	CQ11_05155
CQ11_05280	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CQ11_05280	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CQ11_05285	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CQ11_05285	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CQ11_05310	PWY-5913	TCA cycle VI (obligate autotrophs)
CQ11_05310	PWY-6549	L-glutamine biosynthesis III
CQ11_05310	PWY-6728	methylaspartate cycle
CQ11_05310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_05310	PWY-7124	ethylene biosynthesis V (engineered)
CQ11_05310	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_05310	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CQ11_05485	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CQ11_05485	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_05485	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_05485	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_05485	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_05485	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_05485	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_05485	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CQ11_05520	PWY-4981	L-proline biosynthesis II (from arginine)
CQ11_05520	PWY-4984	urea cycle
CQ11_05520	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CQ11_05525	PWY-4981	L-proline biosynthesis II (from arginine)
CQ11_05620	PWY-7560	methylerythritol phosphate pathway II
CQ11_05680	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CQ11_05680	PWY-6853	ethylene biosynthesis II (microbes)
CQ11_05680	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CQ11_05750	PWY-1042	glycolysis IV (plant cytosol)
CQ11_05750	PWY-1622	formaldehyde assimilation I (serine pathway)
CQ11_05750	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CQ11_05750	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_05750	PWY-5723	Rubisco shunt
CQ11_05750	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CQ11_05750	PWY-6886	1-butanol autotrophic biosynthesis
CQ11_05750	PWY-6901	superpathway of glucose and xylose degradation
CQ11_05750	PWY-7003	glycerol degradation to butanol
CQ11_05750	PWY-7124	ethylene biosynthesis V (engineered)
CQ11_05750	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CQ11_05765	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CQ11_05825	PWY-7560	methylerythritol phosphate pathway II
CQ11_05920	PWY-7921	CQ11_05920
CQ11_05920	PWY-7922	CQ11_05920
CQ11_05920	PWY-7979	CQ11_05920
CQ11_06245	PWY-6823	molybdenum cofactor biosynthesis
CQ11_06305	PWY-3861	mannitol degradation II
CQ11_06305	PWY-3881	mannitol biosynthesis
CQ11_06305	PWY-5659	GDP-mannose biosynthesis
CQ11_06305	PWY-6992	1,5-anhydrofructose degradation
CQ11_06305	PWY-7456	mannan degradation
CQ11_06305	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CQ11_06305	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CQ11_06460	PWY-2941	L-lysine biosynthesis II
CQ11_06460	PWY-2942	L-lysine biosynthesis III
CQ11_06460	PWY-5097	L-lysine biosynthesis VI
CQ11_06460	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CQ11_06460	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CQ11_06460	PWY-6559	spermidine biosynthesis II
CQ11_06460	PWY-6562	norspermidine biosynthesis
CQ11_06460	PWY-7153	grixazone biosynthesis
CQ11_06460	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CQ11_06460	PWY-7977	CQ11_06460
CQ11_06465	PWY-2941	L-lysine biosynthesis II
CQ11_06465	PWY-2942	L-lysine biosynthesis III
CQ11_06465	PWY-5097	L-lysine biosynthesis VI
CQ11_06465	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CQ11_06465	PWY-6559	spermidine biosynthesis II
CQ11_06465	PWY-6562	norspermidine biosynthesis
CQ11_06465	PWY-7153	grixazone biosynthesis
CQ11_06465	PWY-7977	CQ11_06465
CQ11_06595	PWY-7560	methylerythritol phosphate pathway II
CQ11_06600	PWY-7560	methylerythritol phosphate pathway II
CQ11_06625	PWY-1622	formaldehyde assimilation I (serine pathway)
CQ11_06625	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_06725	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_06725	PWY-6416	quinate degradation II
CQ11_06725	PWY-6707	gallate biosynthesis
CQ11_06780	PWY-6123	inosine-5'-phosphate biosynthesis I
CQ11_06780	PWY-6124	inosine-5'-phosphate biosynthesis II
CQ11_06780	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_06780	PWY-7234	inosine-5'-phosphate biosynthesis III
CQ11_06810	PWY-2723	trehalose degradation V
CQ11_06810	PWY-3801	sucrose degradation II (sucrose synthase)
CQ11_06810	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CQ11_06810	PWY-5661	GDP-glucose biosynthesis
CQ11_06810	PWY-5940	streptomycin biosynthesis
CQ11_06810	PWY-5941	glycogen degradation II (eukaryotic)
CQ11_06810	PWY-622	starch biosynthesis
CQ11_06810	PWY-6317	galactose degradation I (Leloir pathway)
CQ11_06810	PWY-6731	starch degradation III
CQ11_06810	PWY-6737	starch degradation V
CQ11_06810	PWY-6749	CMP-legionaminate biosynthesis I
CQ11_06810	PWY-6981	chitin biosynthesis
CQ11_06810	PWY-7238	sucrose biosynthesis II
CQ11_06810	PWY-7343	UDP-glucose biosynthesis
CQ11_06810	PWY-7900	CQ11_06810
CQ11_06810	PWY-7902	CQ11_06810
CQ11_06895	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_06895	PWY-5723	Rubisco shunt
CQ11_06915	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CQ11_06925	PWY-5642	2,4-dinitrotoluene degradation
CQ11_07000	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CQ11_07000	PWY-7248	pectin degradation III
CQ11_07025	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_07090	PWY-6317	galactose degradation I (Leloir pathway)
CQ11_07090	PWY-6527	stachyose degradation
CQ11_07205	PWY-2942	L-lysine biosynthesis III
CQ11_07240	PWY-4261	glycerol degradation I
CQ11_07435	PWY-6910	hydroxymethylpyrimidine salvage
CQ11_07435	PWY-7356	thiamin salvage IV (yeast)
CQ11_07435	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CQ11_07505	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_07505	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CQ11_07505	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_07505	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_07550	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CQ11_07550	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CQ11_07550	PWY-7953	CQ11_07550
CQ11_07695	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_07695	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CQ11_07695	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_07695	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_07745	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CQ11_07745	PWY-6153	autoinducer AI-2 biosynthesis I
CQ11_07745	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CQ11_07750	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CQ11_07750	PWY-6153	autoinducer AI-2 biosynthesis I
CQ11_07750	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CQ11_07770	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CQ11_07770	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_07770	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_07770	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_07770	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07770	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07770	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_07770	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CQ11_07785	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CQ11_07785	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_07785	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_07785	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_07785	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07785	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07785	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_07785	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CQ11_07895	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07895	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07895	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_07930	PWY-7242	D-fructuronate degradation
CQ11_07935	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CQ11_07935	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CQ11_07935	PWY-7242	D-fructuronate degradation
CQ11_07935	PWY-7310	D-glucosaminate degradation
CQ11_07935	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CQ11_07975	PWY-6527	stachyose degradation
CQ11_08045	PWY-3821	galactose degradation III
CQ11_08045	PWY-6317	galactose degradation I (Leloir pathway)
CQ11_08045	PWY-6527	stachyose degradation
CQ11_08160	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CQ11_08175	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CQ11_08200	PWY-7183	pyrimidine nucleobases salvage I
CQ11_08280	PWY-6823	molybdenum cofactor biosynthesis
CQ11_08285	PWY-6823	molybdenum cofactor biosynthesis
CQ11_08290	PWY-6823	molybdenum cofactor biosynthesis
CQ11_08290	PWY-7887	CQ11_08290
CQ11_08295	PWY-6823	molybdenum cofactor biosynthesis
CQ11_08320	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_08320	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CQ11_08320	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_08320	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_08425	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CQ11_08425	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_08425	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_08425	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CQ11_08425	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_08425	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_08605	PWY-2722	trehalose degradation IV
CQ11_08605	PWY-2723	trehalose degradation V
CQ11_08605	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CQ11_08605	PWY-5661	GDP-glucose biosynthesis
CQ11_08605	PWY-621	sucrose degradation III (sucrose invertase)
CQ11_08605	PWY-7238	sucrose biosynthesis II
CQ11_08605	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_08655	PWY-7183	pyrimidine nucleobases salvage I
CQ11_08660	PWY-5686	UMP biosynthesis
CQ11_08660	PWY-7790	CQ11_08660
CQ11_08660	PWY-7791	CQ11_08660
CQ11_08665	PWY-5686	UMP biosynthesis
CQ11_08665	PWY-7790	CQ11_08665
CQ11_08665	PWY-7791	CQ11_08665
CQ11_08670	PWY-5686	UMP biosynthesis
CQ11_08670	PWY-7790	CQ11_08670
CQ11_08670	PWY-7791	CQ11_08670
CQ11_08675	PWY-5686	UMP biosynthesis
CQ11_08675	PWY-7790	CQ11_08675
CQ11_08675	PWY-7791	CQ11_08675
CQ11_08680	PWY-5686	UMP biosynthesis
CQ11_08795	PWY-1042	glycolysis IV (plant cytosol)
CQ11_08795	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CQ11_08795	PWY-5484	glycolysis II (from fructose 6-phosphate)
CQ11_08795	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CQ11_08795	PWY-7385	1,3-propanediol biosynthesis (engineered)
CQ11_08805	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CQ11_08810	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CQ11_08815	PWY-6123	inosine-5'-phosphate biosynthesis I
CQ11_08815	PWY-6124	inosine-5'-phosphate biosynthesis II
CQ11_08815	PWY-7234	inosine-5'-phosphate biosynthesis III
CQ11_08885	PWY-5481	pyruvate fermentation to lactate
CQ11_08885	PWY-6901	superpathway of glucose and xylose degradation
CQ11_09065	PWY-4261	glycerol degradation I
CQ11_09075	PWY-6349	CDP-archaeol biosynthesis
CQ11_09080	PWY-4261	glycerol degradation I
CQ11_09090	PWY-4261	glycerol degradation I
CQ11_09210	PWY-4261	glycerol degradation I
CQ11_09245	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_09295	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_09335	PWY-6902	chitin degradation II
CQ11_09335	PWY-7822	CQ11_09335
CQ11_09335	PWY-7883	CQ11_09335
CQ11_09340	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_09630	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CQ11_09630	PWY-6549	L-glutamine biosynthesis III
CQ11_09630	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CQ11_09630	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CQ11_09660	PWY-7805	CQ11_09660
CQ11_09660	PWY-7807	CQ11_09660
CQ11_09665	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_09665	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_09680	PWY-6599	guanine and guanosine salvage II
CQ11_09680	PWY-6609	adenine and adenosine salvage III
CQ11_09680	PWY-6610	adenine and adenosine salvage IV
CQ11_09680	PWY-6620	guanine and guanosine salvage
CQ11_09690	PWY-5663	tetrahydrobiopterin biosynthesis I
CQ11_09690	PWY-5664	tetrahydrobiopterin biosynthesis II
CQ11_09690	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CQ11_09690	PWY-6703	preQ<sub>0</sub> biosynthesis
CQ11_09690	PWY-6983	tetrahydrobiopterin biosynthesis III
CQ11_09690	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CQ11_09690	PWY-7852	CQ11_09690
CQ11_09695	PWY-6614	tetrahydrofolate biosynthesis
CQ11_09700	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CQ11_09700	PWY-6148	tetrahydromethanopterin biosynthesis
CQ11_09700	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CQ11_09700	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CQ11_09700	PWY-7852	CQ11_09700
CQ11_09700	PWY-7853	CQ11_09700
CQ11_09740	PWY-6807	xyloglucan degradation II (exoglucanase)
CQ11_09775	PWY-5155	&beta;-alanine biosynthesis III
CQ11_09795	PWY-4261	glycerol degradation I
CQ11_09820	PWY-4261	glycerol degradation I
CQ11_09820	PWY-6118	glycerol-3-phosphate shuttle
CQ11_09820	PWY-6952	glycerophosphodiester degradation
CQ11_09825	PWY-4261	glycerol degradation I
CQ11_09825	PWY-6118	glycerol-3-phosphate shuttle
CQ11_09825	PWY-6952	glycerophosphodiester degradation
CQ11_09890	PWY-5839	menaquinol-7 biosynthesis
CQ11_09890	PWY-5851	demethylmenaquinol-9 biosynthesis
CQ11_09890	PWY-5852	demethylmenaquinol-8 biosynthesis I
CQ11_09890	PWY-5853	demethylmenaquinol-6 biosynthesis I
CQ11_09890	PWY-5890	menaquinol-10 biosynthesis
CQ11_09890	PWY-5891	menaquinol-11 biosynthesis
CQ11_09890	PWY-5892	menaquinol-12 biosynthesis
CQ11_09890	PWY-5895	menaquinol-13 biosynthesis
CQ11_09920	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CQ11_09925	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CQ11_09930	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CQ11_09940	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CQ11_09940	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CQ11_09940	PWY-6406	salicylate biosynthesis I
CQ11_09945	PWY-5839	menaquinol-7 biosynthesis
CQ11_09945	PWY-5844	menaquinol-9 biosynthesis
CQ11_09945	PWY-5849	menaquinol-6 biosynthesis
CQ11_09945	PWY-5890	menaquinol-10 biosynthesis
CQ11_09945	PWY-5891	menaquinol-11 biosynthesis
CQ11_09945	PWY-5892	menaquinol-12 biosynthesis
CQ11_09945	PWY-5895	menaquinol-13 biosynthesis
CQ11_10090	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CQ11_10140	PWY-2941	L-lysine biosynthesis II
CQ11_10140	PWY-2942	L-lysine biosynthesis III
CQ11_10140	PWY-5097	L-lysine biosynthesis VI
CQ11_10155	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CQ11_10155	PWY-6855	chitin degradation I (archaea)
CQ11_10155	PWY-6906	chitin derivatives degradation
CQ11_10160	PWY-6906	chitin derivatives degradation
CQ11_10160	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CQ11_10160	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CQ11_10200	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CQ11_10260	PWY-2941	L-lysine biosynthesis II
CQ11_10260	PWY-2942	L-lysine biosynthesis III
CQ11_10260	PWY-5097	L-lysine biosynthesis VI
CQ11_10275	PWY-702	L-methionine biosynthesis II
CQ11_10280	PWY-7980	CQ11_10280
CQ11_10305	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CQ11_10305	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CQ11_10305	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CQ11_10335	PWY-7980	CQ11_10335
CQ11_10345	PWY-7980	CQ11_10345
CQ11_10430	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CQ11_10430	PWY-622	starch biosynthesis
CQ11_10430	PWY-7900	CQ11_10430
CQ11_10440	PWY-2622	trehalose biosynthesis IV
CQ11_10440	PWY-7900	CQ11_10440
CQ11_10445	PWY-7900	CQ11_10445
CQ11_10475	PWY-5941	glycogen degradation II (eukaryotic)
CQ11_10475	PWY-6731	starch degradation III
CQ11_10475	PWY-6737	starch degradation V
CQ11_10475	PWY-7238	sucrose biosynthesis II
CQ11_10490	PWY-5381	pyridine nucleotide cycling (plants)
CQ11_10490	PWY-7761	CQ11_10490
CQ11_10535	PWY-6902	chitin degradation II
CQ11_10535	PWY-7822	CQ11_10535
CQ11_10535	PWY-7883	CQ11_10535
CQ11_10575	PWY-3781	aerobic respiration I (cytochrome c)
CQ11_10575	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CQ11_10575	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_10575	PWY-5690	TCA cycle II (plants and fungi)
CQ11_10575	PWY-6728	methylaspartate cycle
CQ11_10575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_10575	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_10575	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CQ11_10580	PWY-3781	aerobic respiration I (cytochrome c)
CQ11_10580	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CQ11_10580	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CQ11_10580	PWY-5690	TCA cycle II (plants and fungi)
CQ11_10580	PWY-6728	methylaspartate cycle
CQ11_10580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CQ11_10580	PWY-7254	TCA cycle VII (acetate-producers)
CQ11_10580	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CQ11_10595	PWY-3841	folate transformations II
CQ11_10595	PWY-6614	tetrahydrofolate biosynthesis
CQ11_10600	PWY-3841	folate transformations II
CQ11_10600	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CQ11_10600	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CQ11_10600	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CQ11_10600	PWY-7199	pyrimidine deoxyribonucleosides salvage
CQ11_10600	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CQ11_10690	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
