CQ11_00025 PF13242 HAD-hyrolase-like CQ11_00025 PF13344 Haloacid dehalogenase-like hydrolase CQ11_00035 PF01479 S4 domain CQ11_00035 PF01728 FtsJ-like methyltransferase CQ11_00040 PF01513 ATP-NAD kinase CQ11_00045 PF02463 RecF/RecN/SMC N terminal domain CQ11_00050 PF12555 CQ11_00050 CQ11_00055 PF11382 CQ11_00055 CQ11_00065 PF03023 CQ11_00065 CQ11_00070 PF00293 NUDIX domain CQ11_00075 PF13412 Winged helix-turn-helix DNA-binding CQ11_00080 PF01458 Uncharacterized protein family (UPF0051) CQ11_00085 PF01458 Uncharacterized protein family (UPF0051) CQ11_00090 PF00355 Rieske [2Fe-2S] domain CQ11_00095 PF00005 ABC transporter CQ11_00100 PF00266 Aminotransferase class-V CQ11_00105 PF01592 NifU-like N terminal domain CQ11_00110 PF01883 Domain of unknown function DUF59 CQ11_00115 PF00581 Rhodanese-like domain CQ11_00120 PF00005 ABC transporter CQ11_00120 PF12848 ABC transporter CQ11_00125 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_00130 PF12710 haloacid dehalogenase-like hydrolase CQ11_00135 PF09683 Bacteriocin (Lactococcin_972) CQ11_00145 PF00005 ABC transporter CQ11_00150 PF00483 Nucleotidyl transferase CQ11_00155 PF00534 Glycosyl transferases group 1 CQ11_00155 PF13439 Glycosyltransferase Family 4 CQ11_00160 PF00005 ABC transporter CQ11_00165 PF01957 NfeD-like C-terminal, partner-binding CQ11_00170 PF01145 SPFH domain / Band 7 family CQ11_00175 PF00588 SpoU rRNA Methylase family CQ11_00180 PF01381 Helix-turn-helix CQ11_00190 PF00588 SpoU rRNA Methylase family CQ11_00195 PF01161 Phosphatidylethanolamine-binding protein CQ11_00210 PF02811 PHP domain CQ11_00210 PF07733 Bacterial DNA polymerase III alpha subunit CQ11_00210 PF14579 Helix-hairpin-helix motif CQ11_00230 PF08501 Shikimate dehydrogenase substrate binding domain CQ11_00235 PF00117 Glutamine amidotransferase class-I CQ11_00240 PF04107 Glutamate-cysteine ligase family 2(GCS2) CQ11_00245 PF01546 Peptidase family M20/M25/M40 CQ11_00245 PF07687 Peptidase dimerisation domain CQ11_00255 PF02673 CQ11_00255 CQ11_00260 PF13419 Haloacid dehalogenase-like hydrolase CQ11_00265 PF12705 PD-(D/E)XK nuclease superfamily CQ11_00270 PF08704 tRNA methyltransferase complex GCD14 subunit CQ11_00270 PF14801 tRNA methyltransferase complex GCD14 subunit N-term CQ11_00275 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_00275 PF16450 CQ11_00275 CQ11_00280 PF03136 Pup-ligase protein CQ11_00285 PF05639 Pup-like protein CQ11_00290 PF03136 Pup-ligase protein CQ11_00295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQ11_00305 PF00977 Histidine biosynthesis protein CQ11_00310 PF01502 Phosphoribosyl-AMP cyclohydrolase CQ11_00325 PF00224 Pyruvate kinase, barrel domain CQ11_00325 PF02887 Pyruvate kinase, alpha/beta domain CQ11_00335 PF00072 Response regulator receiver domain CQ11_00335 PF03861 ANTAR domain CQ11_00340 PF03061 Thioesterase superfamily CQ11_00345 PF00476 DNA polymerase family A CQ11_00345 PF01367 5'-3' exonuclease, C-terminal SAM fold CQ11_00345 PF01612 3'-5' exonuclease CQ11_00345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CQ11_00350 PF00575 S1 RNA binding domain CQ11_00365 PF00005 ABC transporter CQ11_00370 PF01470 Pyroglutamyl peptidase CQ11_00375 PF01121 Dephospho-CoA kinase CQ11_00380 PF00271 Helicase conserved C-terminal domain CQ11_00380 PF02151 UvrB/uvrC motif CQ11_00380 PF04851 Type III restriction enzyme, res subunit CQ11_00380 PF12344 Ultra-violet resistance protein B CQ11_00385 PF03741 CQ11_00385 CQ11_00390 PF13593 SBF-like CPA transporter family (DUF4137) CQ11_00395 PF03795 YCII-related domain CQ11_00400 PF00005 ABC transporter CQ11_00405 PF01541 GIY-YIG catalytic domain CQ11_00405 PF02151 UvrB/uvrC motif CQ11_00405 PF08459 UvrC Helix-hairpin-helix N-terminal CQ11_00405 PF12826 Helix-hairpin-helix motif CQ11_00410 PF03668 CQ11_00410 CQ11_00415 PF01933 Uncharacterised protein family UPF0052 CQ11_00420 PF02650 WhiA C-terminal HTH domain CQ11_00420 PF10298 WhiA N-terminal LAGLIDADG-like domain CQ11_00420 PF14527 WhiA LAGLIDADG-like domain CQ11_00425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQ11_00425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CQ11_00430 PF00162 Phosphoglycerate kinase CQ11_00435 PF00121 Triosephosphate isomerase CQ11_00440 PF03840 Preprotein translocase SecG subunit CQ11_00445 PF10128 CQ11_00445 CQ11_00450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CQ11_00450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CQ11_00455 PF00923 Transaldolase CQ11_00460 PF00456 Transketolase, thiamine diphosphate binding domain CQ11_00460 PF02779 Transketolase, pyrimidine binding domain CQ11_00460 PF02780 Transketolase, C-terminal domain CQ11_00465 PF00589 Phage integrase family CQ11_00465 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_00470 PF13614 AAA domain CQ11_00475 PF02616 ScpA/B protein CQ11_00480 PF04079 Putative transcriptional regulators (Ypuh-like) CQ11_00485 PF00849 RNA pseudouridylate synthase CQ11_00485 PF01479 S4 domain CQ11_00490 PF02153 Prephenate dehydrogenase CQ11_00490 PF02224 Cytidylate kinase CQ11_00495 PF01926 50S ribosome-binding GTPase CQ11_00495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CQ11_00500 PF00365 Phosphofructokinase CQ11_00510 PF01433 Peptidase family M1 CQ11_00510 PF11838 ERAP1-like C-terminal domain CQ11_00515 PF00498 FHA domain CQ11_00520 PF13411 MerR HTH family regulatory protein CQ11_00525 PF13411 MerR HTH family regulatory protein CQ11_00535 PF13397 Domain of unknown function (DUF4109) CQ11_00545 PF00795 Carbon-nitrogen hydrolase CQ11_00550 PF00270 DEAD/DEAH box helicase CQ11_00550 PF00271 Helicase conserved C-terminal domain CQ11_00550 PF08148 DSHCT (NUC185) domain CQ11_00555 PF00781 Diacylglycerol kinase catalytic domain CQ11_00565 PF13280 CQ11_00565 CQ11_00570 PF13280 CQ11_00570 CQ11_00575 PF12982 CQ11_00575 CQ11_00580 PF01634 ATP phosphoribosyltransferase CQ11_00580 PF08029 HisG, C-terminal domain CQ11_00585 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CQ11_00590 PF09084 NMT1/THI5 like CQ11_00595 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_00600 PF00834 Ribulose-phosphate 3 epimerase family CQ11_00605 PF01029 NusB family CQ11_00605 PF01189 NOL1/NOP2/sun family CQ11_00610 PF00551 Formyl transferase CQ11_00610 PF02911 Formyl transferase, C-terminal domain CQ11_00620 PF00438 S-adenosylmethionine synthetase, N-terminal domain CQ11_00620 PF02772 S-adenosylmethionine synthetase, central domain CQ11_00620 PF02773 S-adenosylmethionine synthetase, C-terminal domain CQ11_00625 PF02441 Flavoprotein CQ11_00625 PF04127 DNA / pantothenate metabolism flavoprotein CQ11_00630 PF01192 RNA polymerase Rpb6 CQ11_00635 PF00625 Guanylate kinase CQ11_00650 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CQ11_00655 PF01029 NusB family CQ11_00660 PF01132 Elongation factor P (EF-P) OB domain CQ11_00660 PF08207 Elongation factor P (EF-P) KOW-like domain CQ11_00660 PF09285 Elongation factor P, C-terminal CQ11_00665 PF00122 E1-E2 ATPase CQ11_00665 PF00702 haloacid dehalogenase-like hydrolase CQ11_00670 PF01202 Shikimate kinase CQ11_00675 PF01202 Shikimate kinase CQ11_00675 PF01761 3-dehydroquinate synthase CQ11_00680 PF01264 Chorismate synthase CQ11_00685 PF01478 Type IV leader peptidase family CQ11_00695 PF02618 YceG-like family CQ11_00700 PF03652 Uncharacterised protein family (UPF0081) CQ11_00705 PF01411 tRNA synthetases class II (A) CQ11_00705 PF02272 DHHA1 domain CQ11_00705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_00710 PF06103 CQ11_00710 CQ11_00715 PF00163 Ribosomal protein S4/S9 N-terminal domain CQ11_00715 PF01479 S4 domain CQ11_00720 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_00720 PF12002 MgsA AAA+ ATPase C terminal CQ11_00720 PF16193 CQ11_00720 CQ11_00725 PF03176 MMPL family CQ11_00735 PF00583 Acetyltransferase (GNAT) family CQ11_00740 PF00152 tRNA synthetases class II (D, K and N) CQ11_00740 PF01336 OB-fold nucleic acid binding domain CQ11_00740 PF02938 GAD domain CQ11_00745 PF07690 Major Facilitator Superfamily CQ11_00750 PF00270 DEAD/DEAH box helicase CQ11_00750 PF00271 Helicase conserved C-terminal domain CQ11_00750 PF03880 DbpA RNA binding domain CQ11_00760 PF01926 50S ribosome-binding GTPase CQ11_00765 PF00350 Dynamin family CQ11_00770 PF03129 Anticodon binding domain CQ11_00770 PF13393 Histidyl-tRNA synthetase CQ11_00775 PF00753 Metallo-beta-lactamase superfamily CQ11_00780 PF03993 CQ11_00780 CQ11_00790 PF02824 TGS domain CQ11_00790 PF04607 Region found in RelA / SpoT proteins CQ11_00790 PF13291 ACT domain CQ11_00790 PF13328 HD domain CQ11_00795 PF00156 Phosphoribosyl transferase domain CQ11_00800 PF02355 Protein export membrane protein CQ11_00800 PF07549 SecD/SecF GG Motif CQ11_00805 PF03176 MMPL family CQ11_00810 PF02699 Preprotein translocase subunit CQ11_00815 PF05491 Holliday junction DNA helicase ruvB C-terminus CQ11_00815 PF05496 Holliday junction DNA helicase ruvB N-terminus CQ11_00820 PF01330 RuvA N terminal domain CQ11_00820 PF07499 RuvA, C-terminal domain CQ11_00820 PF14520 Helix-hairpin-helix domain CQ11_00825 PF02075 Crossover junction endodeoxyribonuclease RuvC CQ11_00830 PF01709 Transcriptional regulator CQ11_00835 PF00293 NUDIX domain CQ11_00845 PF00534 Glycosyl transferases group 1 CQ11_00845 PF13439 Glycosyltransferase Family 4 CQ11_00850 PF03279 CQ11_00850 CQ11_00855 PF01066 CDP-alcohol phosphatidyltransferase CQ11_00860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_00860 PF03129 Anticodon binding domain CQ11_00860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_00865 PF03313 CQ11_00865 CQ11_00865 PF03315 Serine dehydratase beta chain CQ11_00870 PF00072 Response regulator receiver domain CQ11_00870 PF00196 Bacterial regulatory proteins, luxR family CQ11_00910 PF00128 Alpha amylase, catalytic domain CQ11_00910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_00915 PF00128 Alpha amylase, catalytic domain CQ11_00920 PF00128 Alpha amylase, catalytic domain CQ11_00925 PF11452 CQ11_00925 CQ11_00930 PF00570 HRDC domain CQ11_00930 PF01612 3'-5' exonuclease CQ11_00935 PF02779 Transketolase, pyrimidine binding domain CQ11_00935 PF02780 Transketolase, C-terminal domain CQ11_00935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CQ11_00945 PF00330 Aconitase family (aconitate hydratase) CQ11_00945 PF00694 Aconitase C-terminal domain CQ11_00950 PF05958 tRNA (Uracil-5-)-methyltransferase CQ11_00960 PF02080 TrkA-C domain CQ11_00960 PF02254 TrkA-N domain CQ11_00980 PF12502 CQ11_00980 CQ11_00985 PF13834 CQ11_00985 CQ11_00990 PF11268 CQ11_00990 CQ11_00995 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CQ11_01005 PF00521 DNA gyrase/topoisomerase IV, subunit A CQ11_01005 PF03989 DNA gyrase C-terminal domain, beta-propeller CQ11_01010 PF00583 Acetyltransferase (GNAT) family CQ11_01015 PF13673 Acetyltransferase (GNAT) domain CQ11_01020 PF00204 DNA gyrase B CQ11_01020 PF00986 DNA gyrase B subunit, carboxyl terminus CQ11_01020 PF01751 Toprim domain CQ11_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_01030 PF00929 Exonuclease CQ11_01035 PF00140 Sigma-70 factor, region 1 CQ11_01035 PF04539 Sigma-70 region 3 CQ11_01035 PF04542 Sigma-70 region 2 CQ11_01035 PF04545 Sigma-70, region 4 CQ11_01040 PF00582 Universal stress protein family CQ11_01045 PF13830 CQ11_01045 CQ11_01050 PF00348 Polyprenyl synthetase CQ11_01060 PF01464 Transglycosylase SLT domain CQ11_01060 PF01476 LysM domain CQ11_01065 PF00069 Protein kinase domain CQ11_01065 PF03793 PASTA domain CQ11_01070 PF01474 Class-II DAHP synthetase family CQ11_01075 PF00365 Phosphofructokinase CQ11_01085 PF00929 Exonuclease CQ11_01095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CQ11_01095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CQ11_01100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQ11_01105 PF01521 Iron-sulphur cluster biosynthesis CQ11_01115 PF01546 Peptidase family M20/M25/M40 CQ11_01115 PF07687 Peptidase dimerisation domain CQ11_01120 PF11241 CQ11_01120 CQ11_01130 PF00883 Cytosol aminopeptidase family, catalytic domain CQ11_01130 PF02789 Cytosol aminopeptidase family, N-terminal domain CQ11_01140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_01140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_01145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQ11_01145 PF00364 Biotin-requiring enzyme CQ11_01145 PF02817 e3 binding domain CQ11_01155 PF07690 Major Facilitator Superfamily CQ11_01160 PF13829 CQ11_01160 CQ11_01165 PF00120 Glutamine synthetase, catalytic domain CQ11_01165 PF03951 Glutamine synthetase, beta-Grasp domain CQ11_01170 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_01175 PF03710 Glutamate-ammonia ligase adenylyltransferase CQ11_01175 PF08335 GlnD PII-uridylyltransferase CQ11_01180 PF00120 Glutamine synthetase, catalytic domain CQ11_01180 PF03951 Glutamine synthetase, beta-Grasp domain CQ11_01190 PF00557 Metallopeptidase family M24 CQ11_01195 PF00480 ROK family CQ11_01200 PF03883 CQ11_01200 CQ11_01210 PF01784 NIF3 (NGG1p interacting factor 3) CQ11_01215 PF02537 CQ11_01215 CQ11_01220 PF02537 CQ11_01220 CQ11_01245 PF11253 CQ11_01245 CQ11_01250 PF00456 Transketolase, thiamine diphosphate binding domain CQ11_01255 PF00005 ABC transporter CQ11_01255 PF00664 ABC transporter transmembrane region CQ11_01260 PF00005 ABC transporter CQ11_01260 PF00664 ABC transporter transmembrane region CQ11_01265 PF13419 Haloacid dehalogenase-like hydrolase CQ11_01270 PF01300 Telomere recombination CQ11_01285 PF11343 CQ11_01285 CQ11_01290 PF01370 NAD dependent epimerase/dehydratase family CQ11_01290 PF08338 Domain of unknown function (DUF1731) CQ11_01295 PF01327 Polypeptide deformylase CQ11_01305 PF00589 Phage integrase family CQ11_01320 PF01510 N-acetylmuramoyl-L-alanine amidase CQ11_01320 PF08230 CQ11_01320 CQ11_01370 PF04586 CQ11_01370 CQ11_01375 PF04860 Phage portal protein CQ11_01390 PF01844 HNH endonuclease CQ11_01455 PF01032 FecCD transport family CQ11_01460 PF01497 Periplasmic binding protein CQ11_01465 PF04213 CQ11_01465 CQ11_01475 PF12838 4Fe-4S dicluster domain CQ11_01480 PF02613 Nitrate reductase delta subunit CQ11_01490 PF02416 mttA/Hcf106 family CQ11_01495 PF00902 Sec-independent protein translocase protein (TatC) CQ11_01505 PF01807 CHC2 zinc finger CQ11_01505 PF08275 DNA primase catalytic core, N-terminal domain CQ11_01505 PF08278 DNA primase DnaG DnaB-binding CQ11_01505 PF10410 DnaB-helicase binding domain of primase CQ11_01505 PF13662 Toprim domain CQ11_01510 PF01966 HD domain CQ11_01510 PF13286 Phosphohydrolase-associated domain CQ11_01520 PF01207 Dihydrouridine synthase (Dus) CQ11_01525 PF07907 CQ11_01525 CQ11_01530 PF03129 Anticodon binding domain CQ11_01535 PF01297 Periplasmic solute binding protein family CQ11_01540 PF00005 ABC transporter CQ11_01545 PF00950 CQ11_01545 CQ11_01550 PF01475 Ferric uptake regulator family CQ11_01555 PF09335 CQ11_01555 CQ11_01560 PF13275 S4 domain CQ11_01565 PF01336 OB-fold nucleic acid binding domain CQ11_01565 PF02811 PHP domain CQ11_01565 PF07733 Bacterial DNA polymerase III alpha subunit CQ11_01565 PF14579 Helix-hairpin-helix motif CQ11_01570 PF13673 Acetyltransferase (GNAT) domain CQ11_01575 PF00849 RNA pseudouridylate synthase CQ11_01580 PF01252 CQ11_01580 CQ11_01585 PF05103 DivIVA protein CQ11_01590 PF02325 CQ11_01590 CQ11_01595 PF04472 Protein of unknown function (DUF552) CQ11_01600 PF02578 Multi-copper polyphenol oxidoreductase laccase CQ11_01605 PF00091 Tubulin/FtsZ family, GTPase domain CQ11_01605 PF12327 FtsZ family, C-terminal domain CQ11_01610 PF03799 Cell division protein FtsQ CQ11_01610 PF08478 POTRA domain, FtsQ-type CQ11_01620 PF03033 Glycosyltransferase family 28 N-terminal domain CQ11_01620 PF04101 Glycosyltransferase family 28 C-terminal domain CQ11_01625 PF01098 CQ11_01625 CQ11_01630 PF02875 Mur ligase family, glutamate ligase domain CQ11_01630 PF08245 Mur ligase middle domain CQ11_01635 PF00953 Glycosyl transferase family 4 CQ11_01635 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CQ11_01640 PF01225 Mur ligase family, catalytic domain CQ11_01640 PF02875 Mur ligase family, glutamate ligase domain CQ11_01640 PF08245 Mur ligase middle domain CQ11_01645 PF01225 Mur ligase family, catalytic domain CQ11_01645 PF02875 Mur ligase family, glutamate ligase domain CQ11_01645 PF08245 Mur ligase middle domain CQ11_01650 PF00905 Penicillin binding protein transpeptidase domain CQ11_01650 PF03717 Penicillin-binding Protein dimerisation domain CQ11_01660 PF01795 MraW methylase family CQ11_01665 PF02381 MraZ protein CQ11_01670 PF11239 CQ11_01670 CQ11_01675 PF00817 impB/mucB/samB family CQ11_01675 PF11799 impB/mucB/samB family C-terminal domain CQ11_01685 PF09754 PAC2 family CQ11_01690 PF13245 Part of AAA domain CQ11_01695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQ11_01695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQ11_01700 PF00501 AMP-binding enzyme CQ11_01700 PF13193 AMP-binding enzyme C-terminal domain CQ11_01710 PF01476 LysM domain CQ11_01715 PF00717 Peptidase S24-like CQ11_01715 PF01726 LexA DNA binding domain CQ11_01720 PF13307 Helicase C-terminal domain CQ11_01725 PF01926 50S ribosome-binding GTPase CQ11_01725 PF13167 CQ11_01725 CQ11_01725 PF16360 CQ11_01725 CQ11_01730 PF05175 Methyltransferase small domain CQ11_01735 PF01715 IPP transferase CQ11_01740 PF00919 Uncharacterized protein family UPF0004 CQ11_01740 PF04055 Radical SAM superfamily CQ11_01745 PF02631 RecX family CQ11_01750 PF00154 recA bacterial DNA recombination protein CQ11_01755 PF11248 CQ11_01755 CQ11_01760 PF13560 Helix-turn-helix domain CQ11_01765 PF02464 Competence-damaged protein CQ11_01775 PF09587 Bacterial capsule synthesis protein PGA_cap CQ11_01780 PF01580 FtsK/SpoIIIE family CQ11_01780 PF09397 Ftsk gamma domain CQ11_01780 PF13491 CQ11_01780 CQ11_01785 PF00753 Metallo-beta-lactamase superfamily CQ11_01785 PF07521 RNA-metabolising metallo-beta-lactamase CQ11_01790 PF00701 Dihydrodipicolinate synthetase family CQ11_01800 PF00176 SNF2 family N-terminal domain CQ11_01800 PF00271 Helicase conserved C-terminal domain CQ11_01805 PF01113 Dihydrodipicolinate reductase, N-terminus CQ11_01805 PF05173 Dihydrodipicolinate reductase, C-terminus CQ11_01810 PF00675 Insulinase (Peptidase family M16) CQ11_01810 PF05193 Peptidase M16 inactive domain CQ11_01820 PF00013 KH domain CQ11_01820 PF00575 S1 RNA binding domain CQ11_01820 PF01138 3' exoribonuclease family, domain 1 CQ11_01820 PF03725 3' exoribonuclease family, domain 2 CQ11_01820 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CQ11_01825 PF00312 Ribosomal protein S15 CQ11_01835 PF00005 ABC transporter CQ11_01845 PF01687 Riboflavin kinase CQ11_01845 PF06574 FAD synthetase CQ11_01855 PF09972 CQ11_01855 CQ11_01860 PF04011 LemA family CQ11_01865 PF00005 ABC transporter CQ11_01870 PF13343 Bacterial extracellular solute-binding protein CQ11_01875 PF07690 Major Facilitator Superfamily CQ11_01880 PF00072 Response regulator receiver domain CQ11_01880 PF00486 Transcriptional regulatory protein, C terminal CQ11_01885 PF00512 His Kinase A (phospho-acceptor) domain CQ11_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_01890 PF01509 TruB family pseudouridylate synthase (N terminal domain) CQ11_01890 PF16198 CQ11_01890 CQ11_01895 PF02033 Ribosome-binding factor A CQ11_01900 PF00009 Elongation factor Tu GTP binding domain CQ11_01900 PF04760 Translation initiation factor IF-2, N-terminal region CQ11_01900 PF11987 Translation-initiation factor 2 CQ11_01910 PF08529 NusA N-terminal domain CQ11_01910 PF13184 NusA-like KH domain CQ11_01915 PF02576 Uncharacterised BCR, YhbC family COG0779 CQ11_01915 PF17384 CQ11_01915 CQ11_01925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_01925 PF03129 Anticodon binding domain CQ11_01925 PF04073 Aminoacyl-tRNA editing domain CQ11_01930 PF00583 Acetyltransferase (GNAT) family CQ11_01930 PF13312 CQ11_01930 CQ11_01935 PF04551 GcpE protein CQ11_01940 PF02163 Peptidase family M50 CQ11_01945 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CQ11_01945 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CQ11_01945 PF13288 DXP reductoisomerase C-terminal domain CQ11_01955 PF04055 Radical SAM superfamily CQ11_01960 PF01148 Cytidylyltransferase family CQ11_01965 PF01765 Ribosome recycling factor CQ11_01970 PF00696 Amino acid kinase family CQ11_01975 PF01479 S4 domain CQ11_01980 PF07690 Major Facilitator Superfamily CQ11_01985 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CQ11_01990 PF01494 FAD binding domain CQ11_01995 PF00766 Electron transfer flavoprotein FAD-binding domain CQ11_01995 PF01012 Electron transfer flavoprotein domain CQ11_02000 PF01012 Electron transfer flavoprotein domain CQ11_02005 PF00889 Elongation factor TS CQ11_02010 PF00318 Ribosomal protein S2 CQ11_02015 PF03458 CQ11_02015 CQ11_02020 PF01551 Peptidase family M23 CQ11_02025 PF00589 Phage integrase family CQ11_02025 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_02030 PF02481 DNA recombination-mediator protein A CQ11_02035 PF01078 Magnesium chelatase, subunit ChlI CQ11_02035 PF13335 CQ11_02035 CQ11_02035 PF13541 Subunit ChlI of Mg-chelatase CQ11_02040 PF02021 Uncharacterised protein family UPF0102 CQ11_02045 PF10611 CQ11_02045 CQ11_02050 PF01351 Ribonuclease HII CQ11_02055 PF00717 Peptidase S24-like CQ11_02070 PF01245 Ribosomal protein L19 CQ11_02075 PF00583 Acetyltransferase (GNAT) family CQ11_02075 PF01746 tRNA (Guanine-1)-methyltransferase CQ11_02080 PF01782 RimM N-terminal domain CQ11_02085 PF13083 KH domain CQ11_02090 PF00886 Ribosomal protein S16 CQ11_02095 PF01545 Cation efflux family CQ11_02095 PF16916 CQ11_02095 CQ11_02100 PF12724 Flavodoxin domain CQ11_02105 PF01979 Amidohydrolase family CQ11_02110 PF00448 SRP54-type protein, GTPase domain CQ11_02110 PF02881 SRP54-type protein, helical bundle domain CQ11_02110 PF02978 Signal peptide binding domain CQ11_02115 PF00448 SRP54-type protein, GTPase domain CQ11_02115 PF02881 SRP54-type protein, helical bundle domain CQ11_02120 PF01289 Thiol-activated cytolysin CQ11_02120 PF17440 CQ11_02120 CQ11_02130 PF02463 RecF/RecN/SMC N terminal domain CQ11_02130 PF06470 SMC proteins Flexible Hinge Domain CQ11_02135 PF00334 Nucleoside diphosphate kinase CQ11_02140 PF02875 Mur ligase family, glutamate ligase domain CQ11_02140 PF08245 Mur ligase middle domain CQ11_02145 PF00133 tRNA synthetases class I (I, L, M and V) CQ11_02145 PF08264 Anticodon-binding domain of tRNA CQ11_02155 PF00756 Putative esterase CQ11_02160 PF03807 NADP oxidoreductase coenzyme F420-dependent CQ11_02160 PF14748 Pyrroline-5-carboxylate reductase dimerisation CQ11_02175 PF00501 AMP-binding enzyme CQ11_02180 PF01817 Chorismate mutase type II CQ11_02185 PF06689 ClpX C4-type zinc finger CQ11_02185 PF07724 AAA domain (Cdc48 subfamily) CQ11_02185 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_02190 PF00574 Clp protease CQ11_02195 PF00574 Clp protease CQ11_02200 PF05697 Bacterial trigger factor protein (TF) CQ11_02200 PF05698 Bacterial trigger factor protein (TF) C-terminus CQ11_02205 PF00248 Aldo/keto reductase family CQ11_02215 PF00933 Glycosyl hydrolase family 3 N terminal domain CQ11_02220 PF13347 MFS/sugar transport protein CQ11_02225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_02225 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_02230 PF00356 Bacterial regulatory proteins, lacI family CQ11_02230 PF13377 Periplasmic binding protein-like domain CQ11_02240 PF04221 RelB antitoxin CQ11_02260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_02260 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_02270 PF01783 Ribosomal L32p protein family CQ11_02275 PF01205 Uncharacterized protein family UPF0029 CQ11_02280 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_02285 PF00132 Bacterial transferase hexapeptide (six repeats) CQ11_02290 PF02502 Ribose/Galactose Isomerase CQ11_02295 PF01431 Peptidase family M13 CQ11_02295 PF05649 Peptidase family M13 CQ11_02300 PF05661 CQ11_02300 CQ11_02305 PF01433 Peptidase family M1 CQ11_02305 PF11838 ERAP1-like C-terminal domain CQ11_02310 PF03352 Methyladenine glycosylase CQ11_02315 PF00367 phosphotransferase system, EIIB CQ11_02320 PF02446 4-alpha-glucanotransferase CQ11_02325 PF13622 Thioesterase-like superfamily CQ11_02330 PF00005 ABC transporter CQ11_02330 PF12848 ABC transporter CQ11_02335 PF00436 Single-strand binding protein family CQ11_02340 PF00009 Elongation factor Tu GTP binding domain CQ11_02345 PF00350 Dynamin family CQ11_02355 PF00929 Exonuclease CQ11_02375 PF00535 Glycosyl transferase family 2 CQ11_02385 PF00535 Glycosyl transferase family 2 CQ11_02395 PF09913 CQ11_02395 CQ11_02400 PF00535 Glycosyl transferase family 2 CQ11_02405 PF10066 CQ11_02405 CQ11_02415 PF00535 Glycosyl transferase family 2 CQ11_02420 PF04991 CQ11_02420 CQ11_02425 PF01636 Phosphotransferase enzyme family CQ11_02425 PF12804 MobA-like NTP transferase domain CQ11_02430 PF00534 Glycosyl transferases group 1 CQ11_02430 PF13439 Glycosyltransferase Family 4 CQ11_02440 PF00270 DEAD/DEAH box helicase CQ11_02440 PF00271 Helicase conserved C-terminal domain CQ11_02440 PF12029 CQ11_02440 CQ11_02445 PF01168 Alanine racemase, N-terminal domain CQ11_02450 PF04055 Radical SAM superfamily CQ11_02450 PF13353 4Fe-4S single cluster domain CQ11_02455 PF01228 Glycine radical CQ11_02460 PF01228 Glycine radical CQ11_02460 PF02901 Pyruvate formate lyase CQ11_02465 PF01063 Aminotransferase class IV CQ11_02480 PF00206 Lyase CQ11_02480 PF10415 Fumarase C C-terminus CQ11_02490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CQ11_02490 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CQ11_02495 PF10369 Small subunit of acetolactate synthase CQ11_02495 PF13710 ACT domain CQ11_02500 PF00205 Thiamine pyrophosphate enzyme, central domain CQ11_02500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_02500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_02505 PF02080 TrkA-C domain CQ11_02505 PF06826 CQ11_02505 CQ11_02510 PF00920 Dehydratase family CQ11_02515 PF08241 Methyltransferase domain CQ11_02540 PF00950 CQ11_02540 CQ11_02545 PF00950 CQ11_02545 CQ11_02550 PF00005 ABC transporter CQ11_02555 PF01297 Periplasmic solute binding protein family CQ11_02560 PF00579 tRNA synthetases class I (W and Y) CQ11_02560 PF01479 S4 domain CQ11_02565 PF00005 ABC transporter CQ11_02570 PF01061 CQ11_02570 CQ11_02575 PF01381 Helix-turn-helix CQ11_02585 PF16363 CQ11_02585 CQ11_02590 PF01316 Arginine repressor, DNA binding domain CQ11_02590 PF02863 Arginine repressor, C-terminal domain CQ11_02595 PF00202 Aminotransferase class-III CQ11_02600 PF04198 Putative sugar-binding domain CQ11_02605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CQ11_02605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CQ11_02610 PF04073 Aminoacyl-tRNA editing domain CQ11_02615 PF01588 Putative tRNA binding domain CQ11_02615 PF03147 Ferredoxin-fold anticodon binding domain CQ11_02615 PF03483 B3/4 domain CQ11_02615 PF03484 tRNA synthetase B5 domain CQ11_02620 PF01409 tRNA synthetases class II core domain (F) CQ11_02620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CQ11_02625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CQ11_02630 PF00588 SpoU rRNA Methylase family CQ11_02635 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CQ11_02640 PF00453 Ribosomal protein L20 CQ11_02645 PF01632 Ribosomal protein L35 CQ11_02650 PF00707 Translation initiation factor IF-3, C-terminal domain CQ11_02650 PF05198 Translation initiation factor IF-3, N-terminal domain CQ11_02655 PF07179 CQ11_02655 CQ11_02660 PF00977 Histidine biosynthesis protein CQ11_02665 PF00117 Glutamine amidotransferase class-I CQ11_02675 PF00475 Imidazoleglycerol-phosphate dehydratase CQ11_02680 PF00155 Aminotransferase class I and II CQ11_02685 PF00815 Histidinol dehydrogenase CQ11_02690 PF01255 Putative undecaprenyl diphosphate synthase CQ11_02695 PF02565 Recombination protein O C terminal CQ11_02695 PF11967 Recombination protein O N terminal CQ11_02700 PF00682 HMGL-like CQ11_02700 PF08502 LeuA allosteric (dimerisation) domain CQ11_02705 PF00069 Protein kinase domain CQ11_02715 PF13672 Protein phosphatase 2C CQ11_02720 PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal CQ11_02725 PF01926 50S ribosome-binding GTPase CQ11_02725 PF07650 KH domain CQ11_02730 PF00571 CBS domain CQ11_02730 PF03471 Transporter associated domain CQ11_02735 PF02130 Uncharacterized protein family UPF0054 CQ11_02740 PF02562 PhoH-like protein CQ11_02745 PF04452 RNA methyltransferase CQ11_02750 PF00226 DnaJ domain CQ11_02750 PF00684 DnaJ central domain CQ11_02750 PF01556 DnaJ C terminal domain CQ11_02755 PF01628 HrcA protein C terminal domain CQ11_02755 PF08220 DeoR-like helix-turn-helix domain CQ11_02760 PF11296 CQ11_02760 CQ11_02770 PF04055 Radical SAM superfamily CQ11_02775 PF02390 Putative methyltransferase CQ11_02780 PF00009 Elongation factor Tu GTP binding domain CQ11_02780 PF00679 Elongation factor G C-terminus CQ11_02780 PF06421 GTP-binding protein LepA C-terminus CQ11_02790 PF03703 CQ11_02790 CQ11_02795 PF02452 PemK-like protein CQ11_02800 PF05532 CsbD-like CQ11_02805 PF01649 Ribosomal protein S20 CQ11_02810 PF02233 NAD(P) transhydrogenase beta subunit CQ11_02815 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CQ11_02815 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CQ11_02815 PF12769 Domain of unknown function (DUF3814) CQ11_02825 PF00753 Metallo-beta-lactamase superfamily CQ11_02825 PF03772 CQ11_02825 CQ11_02830 PF10531 SLBB domain CQ11_02830 PF12836 Helix-hairpin-helix motif CQ11_02835 PF05872 CQ11_02835 CQ11_02840 PF02525 Flavodoxin-like fold CQ11_02845 PF01263 Aldose 1-epimerase CQ11_02850 PF08264 Anticodon-binding domain of tRNA CQ11_02850 PF09334 tRNA synthetases class I (M) CQ11_02850 PF13603 Leucyl-tRNA synthetase, Domain 2 CQ11_02855 PF01230 HIT domain CQ11_02860 PF07884 Vitamin K epoxide reductase family CQ11_02865 PF03332 Eukaryotic phosphomannomutase CQ11_02870 PF01594 CQ11_02870 CQ11_02875 PF01048 Phosphorylase superfamily CQ11_02880 PF01325 Iron dependent repressor, N-terminal DNA binding domain CQ11_02880 PF02742 Iron dependent repressor, metal binding and dimerisation domain CQ11_02880 PF04023 FeoA domain CQ11_02885 PF00265 Thymidine kinase CQ11_02895 PF12840 Helix-turn-helix domain CQ11_02905 PF01297 Periplasmic solute binding protein family CQ11_02915 PF00005 ABC transporter CQ11_02920 PF00950 CQ11_02920 CQ11_02925 PF00294 pfkB family carbohydrate kinase CQ11_02935 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_02940 PF01569 PAP2 superfamily CQ11_02945 PF06940 CQ11_02945 CQ11_02950 PF01381 Helix-turn-helix CQ11_02960 PF00324 Amino acid permease CQ11_02965 PF05681 CQ11_02965 CQ11_02965 PF05683 Fumarase C-terminus CQ11_02970 PF00005 ABC transporter CQ11_02980 PF03180 NLPA lipoprotein CQ11_02985 PF00324 Amino acid permease CQ11_02990 PF05437 CQ11_02990 CQ11_02995 PF03591 CQ11_02995 CQ11_03000 PF00392 Bacterial regulatory proteins, gntR family CQ11_03000 PF07702 UTRA domain CQ11_03005 PF07690 Major Facilitator Superfamily CQ11_03010 PF01156 Inosine-uridine preferring nucleoside hydrolase CQ11_03015 PF01136 CQ11_03015 CQ11_03015 PF16325 CQ11_03015 CQ11_03025 PF01174 SNO glutamine amidotransferase family CQ11_03030 PF01680 SOR/SNZ family CQ11_03035 PF00155 Aminotransferase class I and II CQ11_03035 PF00392 Bacterial regulatory proteins, gntR family CQ11_03045 PF01910 Domain of unknown function DUF77 CQ11_03055 PF00196 Bacterial regulatory proteins, luxR family CQ11_03060 PF04203 Sortase family CQ11_03065 PF00746 CQ11_03065 CQ11_03065 PF16569 CQ11_03065 CQ11_03080 PF01522 Polysaccharide deacetylase CQ11_03080 PF16403 CQ11_03080 CQ11_03085 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_03090 PF00356 Bacterial regulatory proteins, lacI family CQ11_03090 PF13377 Periplasmic binding protein-like domain CQ11_03095 PF05025 RbsD / FucU transport protein family CQ11_03100 PF07690 Major Facilitator Superfamily CQ11_03105 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_03110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_03110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_03115 PF02952 L-fucose isomerase, C-terminal domain CQ11_03115 PF07881 L-fucose isomerase, first N-terminal domain CQ11_03115 PF07882 L-fucose isomerase, second N-terminal domain CQ11_03140 PF00239 Resolvase, N terminal domain CQ11_03140 PF07508 Recombinase CQ11_03140 PF13408 Recombinase zinc beta ribbon domain CQ11_03155 PF13384 Homeodomain-like domain CQ11_03160 PF01510 N-acetylmuramoyl-L-alanine amidase CQ11_03160 PF08230 CQ11_03160 CQ11_03165 PF05105 CQ11_03165 CQ11_03235 PF05521 Phage head-tail joining protein CQ11_03240 PF05135 Phage gp6-like head-tail connector protein CQ11_03245 PF05065 Phage capsid family CQ11_03250 PF00574 Clp protease CQ11_03255 PF04860 Phage portal protein CQ11_03290 PF01555 DNA methylase CQ11_03290 PF02195 ParB-like nuclease domain CQ11_03295 PF00438 S-adenosylmethionine synthetase, N-terminal domain CQ11_03295 PF02772 S-adenosylmethionine synthetase, central domain CQ11_03295 PF02773 S-adenosylmethionine synthetase, C-terminal domain CQ11_03320 PF01844 HNH endonuclease CQ11_03330 PF00176 SNF2 family N-terminal domain CQ11_03340 PF08706 CQ11_03340 CQ11_03340 PF08708 Primase C terminal 1 (PriCT-1) CQ11_03350 PF02498 CQ11_03350 CQ11_03350 PF03374 CQ11_03350 CQ11_03375 PF00476 DNA polymerase family A CQ11_03385 PF10991 Protein of unknown function (DUF2815) CQ11_03405 PF08281 Sigma-70, region 4 CQ11_03420 PF12728 Helix-turn-helix domain CQ11_03425 PF13166 CQ11_03425 CQ11_03430 PF13443 Cro/C1-type HTH DNA-binding domain CQ11_03435 PF00271 Helicase conserved C-terminal domain CQ11_03435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CQ11_03435 PF04851 Type III restriction enzyme, res subunit CQ11_03435 PF08463 CQ11_03435 CQ11_03440 PF02384 N-6 DNA Methylase CQ11_03440 PF12161 HsdM N-terminal domain CQ11_03445 PF01420 Type I restriction modification DNA specificity domain CQ11_03450 PF00872 CQ11_03450 CQ11_03460 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_03465 PF02410 Oligomerisation domain CQ11_03475 PF01467 Cytidylyltransferase CQ11_03480 PF00085 Thioredoxin CQ11_03495 PF01018 GTP1/OBG CQ11_03495 PF01926 50S ribosome-binding GTPase CQ11_03495 PF09269 Domain of unknown function (DUF1967) CQ11_03500 PF01016 Ribosomal L27 protein CQ11_03505 PF00829 Ribosomal prokaryotic L21 protein CQ11_03510 PF00575 S1 RNA binding domain CQ11_03510 PF10150 Ribonuclease E/G family CQ11_03515 PF01654 CQ11_03515 CQ11_03520 PF02322 CQ11_03520 CQ11_03525 PF00005 ABC transporter CQ11_03525 PF00664 ABC transporter transmembrane region CQ11_03530 PF00005 ABC transporter CQ11_03530 PF00664 ABC transporter transmembrane region CQ11_03535 PF01590 GAF domain CQ11_03535 PF07730 Histidine kinase CQ11_03535 PF13185 GAF domain CQ11_03540 PF00005 ABC transporter CQ11_03540 PF00664 ABC transporter transmembrane region CQ11_03545 PF00005 ABC transporter CQ11_03545 PF00664 ABC transporter transmembrane region CQ11_03550 PF00578 AhpC/TSA family CQ11_03555 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_03560 PF00072 Response regulator receiver domain CQ11_03560 PF00196 Bacterial regulatory proteins, luxR family CQ11_03565 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CQ11_03565 PF06827 Zinc finger found in FPG and IleRS CQ11_03565 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CQ11_03570 PF00035 Double-stranded RNA binding motif CQ11_03570 PF14622 Ribonuclease-III-like CQ11_03575 PF02620 CQ11_03575 CQ11_03585 PF01467 Cytidylyltransferase CQ11_03590 PF03602 Conserved hypothetical protein 95 CQ11_03595 PF00270 DEAD/DEAH box helicase CQ11_03595 PF00271 Helicase conserved C-terminal domain CQ11_03595 PF17191 CQ11_03595 CQ11_03600 PF00830 Ribosomal L28 family CQ11_03605 PF08282 haloacid dehalogenase-like hydrolase CQ11_03610 PF00586 AIR synthase related protein, N-terminal domain CQ11_03610 PF02769 AIR synthase related protein, C-terminal domain CQ11_03615 PF03358 NADPH-dependent FMN reductase CQ11_03620 PF01820 D-ala D-ala ligase N-terminus CQ11_03620 PF07478 D-ala D-ala ligase C-terminus CQ11_03625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQ11_03630 PF04239 Protein of unknown function (DUF421) CQ11_03635 PF03577 CQ11_03635 CQ11_03640 PF01614 Bacterial transcriptional regulator CQ11_03640 PF09339 IclR helix-turn-helix domain CQ11_03645 PF00534 Glycosyl transferases group 1 CQ11_03650 PF02016 LD-carboxypeptidase CQ11_03660 PF06800 CQ11_03660 CQ11_03665 PF01432 Peptidase family M3 CQ11_03685 PF13416 Bacterial extracellular solute-binding protein CQ11_03690 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_03695 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_03700 PF00356 Bacterial regulatory proteins, lacI family CQ11_03700 PF13377 Periplasmic binding protein-like domain CQ11_03705 PF04854 CQ11_03705 CQ11_03710 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQ11_03715 PF00155 Aminotransferase class I and II CQ11_03720 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQ11_03720 PF10370 Domain of unknown function (DUF2437) CQ11_03740 PF00578 AhpC/TSA family CQ11_03750 PF16262 CQ11_03750 CQ11_03755 PF01725 Ham1 family CQ11_03760 PF01138 3' exoribonuclease family, domain 1 CQ11_03760 PF03725 3' exoribonuclease family, domain 2 CQ11_03765 PF12706 Beta-lactamase superfamily domain CQ11_03770 PF01177 Asp/Glu/Hydantoin racemase CQ11_03775 PF09438 CQ11_03775 CQ11_03780 PF02617 ATP-dependent Clp protease adaptor protein ClpS CQ11_03785 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CQ11_03790 PF04851 Type III restriction enzyme, res subunit CQ11_03795 PF11238 CQ11_03795 CQ11_03800 PF00216 Bacterial DNA-binding protein CQ11_03805 PF02080 TrkA-C domain CQ11_03805 PF06826 CQ11_03805 CQ11_03815 PF16264 CQ11_03815 CQ11_03820 PF02540 NAD synthase CQ11_03825 PF00583 Acetyltransferase (GNAT) family CQ11_03830 PF00583 Acetyltransferase (GNAT) family CQ11_03835 PF00082 Subtilase family CQ11_03835 PF02225 PA domain CQ11_03835 PF06280 Fn3-like domain (DUF1034) CQ11_03840 PF14133 CQ11_03840 CQ11_03845 PF08241 Methyltransferase domain CQ11_03860 PF12802 MarR family CQ11_03875 PF01402 Ribbon-helix-helix protein, copG family CQ11_03885 PF02016 LD-carboxypeptidase CQ11_03890 PF13242 HAD-hyrolase-like CQ11_03890 PF13344 Haloacid dehalogenase-like hydrolase CQ11_03895 PF01668 SmpB protein CQ11_03900 PF01551 Peptidase family M23 CQ11_03910 PF00005 ABC transporter CQ11_03915 PF00472 RF-1 domain CQ11_03915 PF03462 PCRF domain CQ11_03940 PF00482 Type II secretion system (T2SS), protein F CQ11_03945 PF00482 Type II secretion system (T2SS), protein F CQ11_03950 PF00437 Type II/IV secretion system protein CQ11_03955 PF01636 Phosphotransferase enzyme family CQ11_03960 PF00580 UvrD/REP helicase N-terminal domain CQ11_03960 PF12705 PD-(D/E)XK nuclease superfamily CQ11_03960 PF13361 UvrD-like helicase C-terminal domain CQ11_03965 PF12705 PD-(D/E)XK nuclease superfamily CQ11_03965 PF13245 Part of AAA domain CQ11_03970 PF11305 CQ11_03970 CQ11_03975 PF00270 DEAD/DEAH box helicase CQ11_03975 PF00271 Helicase conserved C-terminal domain CQ11_03980 PF01914 CQ11_03980 CQ11_03985 PF02811 PHP domain CQ11_03990 PF00557 Metallopeptidase family M24 CQ11_03990 PF05195 Aminopeptidase P, N-terminal domain CQ11_03995 PF00571 CBS domain CQ11_03995 PF03448 MgtE intracellular N domain CQ11_04000 PF06210 CQ11_04000 CQ11_04005 PF01883 Domain of unknown function DUF59 CQ11_04005 PF10609 ParA/MinD ATPase like CQ11_04010 PF01596 O-methyltransferase CQ11_04020 PF03641 Possible lysine decarboxylase CQ11_04025 PF01048 Phosphorylase superfamily CQ11_04030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_04030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_04030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_04030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_04035 PF00440 Bacterial regulatory proteins, tetR family CQ11_04040 PF07690 Major Facilitator Superfamily CQ11_04045 PF01791 DeoC/LacD family aldolase CQ11_04055 PF00591 Glycosyl transferase family, a/b domain CQ11_04055 PF02885 Glycosyl transferase family, helical bundle domain CQ11_04055 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CQ11_04060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CQ11_04065 PF02653 CQ11_04065 CQ11_04070 PF02653 CQ11_04070 CQ11_04075 PF00005 ABC transporter CQ11_04080 PF02608 Basic membrane protein CQ11_04090 PF03631 CQ11_04090 CQ11_04095 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_04100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CQ11_04100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CQ11_04105 PF00464 Serine hydroxymethyltransferase CQ11_04110 PF00551 Formyl transferase CQ11_04110 PF01842 ACT domain CQ11_04115 PF02632 BioY family CQ11_04120 PF01648 4'-phosphopantetheinyl transferase superfamily CQ11_04125 PF00109 Beta-ketoacyl synthase, N-terminal domain CQ11_04125 PF00698 Acyl transferase domain CQ11_04125 PF01575 MaoC like domain CQ11_04125 PF02801 Beta-ketoacyl synthase, C-terminal domain CQ11_04125 PF08354 Domain of unknown function (DUF1729) CQ11_04130 PF01039 Carboxyl transferase domain CQ11_04135 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CQ11_04135 PF00364 Biotin-requiring enzyme CQ11_04135 PF02785 Biotin carboxylase C-terminal domain CQ11_04135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQ11_04155 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CQ11_04160 PF01494 FAD binding domain CQ11_04165 PF00766 Electron transfer flavoprotein FAD-binding domain CQ11_04170 PF01012 Electron transfer flavoprotein domain CQ11_04175 PF00440 Bacterial regulatory proteins, tetR family CQ11_04180 PF00753 Metallo-beta-lactamase superfamily CQ11_04185 PF00083 Sugar (and other) transporter CQ11_04190 PF01575 MaoC like domain CQ11_04195 PF00501 AMP-binding enzyme CQ11_04195 PF13193 AMP-binding enzyme C-terminal domain CQ11_04200 PF02515 CoA-transferase family III CQ11_04205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQ11_04205 PF02770 Acyl-CoA dehydrogenase, middle domain CQ11_04205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQ11_04210 PF07859 alpha/beta hydrolase fold CQ11_04215 PF07690 Major Facilitator Superfamily CQ11_04230 PF00056 lactate/malate dehydrogenase, NAD binding domain CQ11_04230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CQ11_04235 PF00089 Trypsin CQ11_04245 PF00342 Phosphoglucose isomerase CQ11_04250 PF00365 Phosphofructokinase CQ11_04260 PF01808 AICARFT/IMPCHase bienzyme CQ11_04260 PF02142 MGS-like domain CQ11_04270 PF14542 GCN5-related N-acetyl-transferase CQ11_04275 PF00549 CoA-ligase CQ11_04275 PF02629 CoA binding domain CQ11_04280 PF00549 CoA-ligase CQ11_04280 PF08442 ATP-grasp domain CQ11_04285 PF01757 CQ11_04285 CQ11_04290 PF00580 UvrD/REP helicase N-terminal domain CQ11_04290 PF13361 UvrD-like helicase C-terminal domain CQ11_04300 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CQ11_04315 PF00009 Elongation factor Tu GTP binding domain CQ11_04315 PF00679 Elongation factor G C-terminus CQ11_04315 PF03764 Elongation factor G, domain IV CQ11_04315 PF14492 Elongation Factor G, domain II CQ11_04320 PF01076 Plasmid recombination enzyme CQ11_04325 PF13481 AAA domain CQ11_04335 PF00589 Phage integrase family CQ11_04335 PF14657 CQ11_04335 CQ11_04335 PF14659 Phage integrase, N-terminal SAM-like domain CQ11_04345 PF01381 Helix-turn-helix CQ11_04350 PF00117 Glutamine amidotransferase class-I CQ11_04350 PF00958 GMP synthase C terminal domain CQ11_04350 PF02540 NAD synthase CQ11_04355 PF00849 RNA pseudouridylate synthase CQ11_04360 PF01515 Phosphate acetyl/butaryl transferase CQ11_04365 PF00871 Acetokinase family CQ11_04370 PF00583 Acetyltransferase (GNAT) family CQ11_04375 PF02687 CQ11_04375 CQ11_04380 PF00005 ABC transporter CQ11_04385 PF03551 Transcriptional regulator PadR-like family CQ11_04390 PF00206 Lyase CQ11_04390 PF10415 Fumarase C C-terminus CQ11_04395 PF00478 IMP dehydrogenase / GMP reductase domain CQ11_04400 PF00929 Exonuclease CQ11_04405 PF00478 IMP dehydrogenase / GMP reductase domain CQ11_04405 PF00571 CBS domain CQ11_04410 PF02467 CQ11_04410 CQ11_04420 PF02769 AIR synthase related protein, C-terminal domain CQ11_04420 PF13507 CobB/CobQ-like glutamine amidotransferase domain CQ11_04425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CQ11_04425 PF02843 Phosphoribosylglycinamide synthetase, C domain CQ11_04425 PF02844 Phosphoribosylglycinamide synthetase, N domain CQ11_04430 PF00551 Formyl transferase CQ11_04435 PF00586 AIR synthase related protein, N-terminal domain CQ11_04435 PF02769 AIR synthase related protein, C-terminal domain CQ11_04440 PF00156 Phosphoribosyl transferase domain CQ11_04440 PF13537 Glutamine amidotransferase domain CQ11_04445 PF01259 SAICAR synthetase CQ11_04450 PF00731 AIR carboxylase CQ11_04460 PF00166 Chaperonin 10 Kd subunit CQ11_04470 PF02535 CQ11_04470 CQ11_04475 PF00814 Glycoprotease family CQ11_04480 PF00209 Sodium:neurotransmitter symporter family CQ11_04490 PF13085 2Fe-2S iron-sulfur cluster binding domain CQ11_04490 PF13183 4Fe-4S dicluster domain CQ11_04495 PF00890 FAD binding domain CQ11_04495 PF02910 Fumarate reductase flavoprotein C-term CQ11_04505 PF00583 Acetyltransferase (GNAT) family CQ11_04520 PF02367 Uncharacterised P-loop hydrolase UPF0079 CQ11_04525 PF00842 Alanine racemase, C-terminal domain CQ11_04525 PF01168 Alanine racemase, N-terminal domain CQ11_04530 PF01256 Carbohydrate kinase CQ11_04530 PF03853 YjeF-related protein N-terminus CQ11_04535 PF01380 SIS domain CQ11_04535 PF13522 Glutamine amidotransferase domain CQ11_04540 PF00485 Phosphoribulokinase / Uridine kinase family CQ11_04545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_04545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_04545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_04545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_04550 PF00380 Ribosomal protein S9/S16 CQ11_04555 PF00572 Ribosomal protein L13 CQ11_04560 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CQ11_04565 PF07155 ECF-type riboflavin transporter, S component CQ11_04570 PF00005 ABC transporter CQ11_04570 PF12558 CQ11_04570 CQ11_04575 PF02361 Cobalt transport protein CQ11_04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQ11_04580 PF03466 LysR substrate binding domain CQ11_04600 PF00480 ROK family CQ11_04605 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQ11_04610 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_04615 PF00005 ABC transporter CQ11_04620 PF07739 TipAS antibiotic-recognition domain CQ11_04620 PF13411 MerR HTH family regulatory protein CQ11_04625 PF02698 DUF218 domain CQ11_04630 PF01196 Ribosomal protein L17 CQ11_04635 PF01000 RNA polymerase Rpb3/RpoA insert domain CQ11_04635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CQ11_04635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CQ11_04640 PF00411 Ribosomal protein S11 CQ11_04645 PF00416 Ribosomal protein S13/S18 CQ11_04650 PF00444 Ribosomal protein L36 CQ11_04655 PF01176 Translation initiation factor 1A / IF-1 CQ11_04660 PF00557 Metallopeptidase family M24 CQ11_04665 PF00406 Adenylate kinase CQ11_04670 PF00344 SecY translocase CQ11_04675 PF00828 Ribosomal protein L18e/L15 CQ11_04680 PF00327 Ribosomal protein L30p/L7e CQ11_04685 PF00333 Ribosomal protein S5, N-terminal domain CQ11_04685 PF03719 Ribosomal protein S5, C-terminal domain CQ11_04690 PF00861 Ribosomal L18p/L5e family CQ11_04695 PF00347 Ribosomal protein L6 CQ11_04700 PF00410 Ribosomal protein S8 CQ11_04705 PF00253 Ribosomal protein S14p/S29e CQ11_04710 PF00281 Ribosomal protein L5 CQ11_04710 PF00673 ribosomal L5P family C-terminus CQ11_04715 PF00467 KOW motif CQ11_04715 PF17136 CQ11_04715 CQ11_04720 PF00238 Ribosomal protein L14p/L23e CQ11_04725 PF00366 Ribosomal protein S17 CQ11_04730 PF00831 Ribosomal L29 protein CQ11_04735 PF00252 Ribosomal protein L16p/L10e CQ11_04740 PF00189 Ribosomal protein S3, C-terminal domain CQ11_04740 PF07650 KH domain CQ11_04745 PF00237 Ribosomal protein L22p/L17e CQ11_04750 PF00203 Ribosomal protein S19 CQ11_04755 PF00181 Ribosomal Proteins L2, RNA binding domain CQ11_04755 PF03947 Ribosomal Proteins L2, C-terminal domain CQ11_04760 PF00276 Ribosomal protein L23 CQ11_04765 PF00573 Ribosomal protein L4/L1 family CQ11_04770 PF00297 Ribosomal protein L3 CQ11_04775 PF00338 Ribosomal protein S10p/S20e CQ11_04780 PF13419 Haloacid dehalogenase-like hydrolase CQ11_04785 PF00821 Phosphoenolpyruvate carboxykinase CQ11_04785 PF17297 CQ11_04785 CQ11_04790 PF00009 Elongation factor Tu GTP binding domain CQ11_04790 PF03143 Elongation factor Tu C-terminal domain CQ11_04790 PF03144 Elongation factor Tu domain 2 CQ11_04795 PF00009 Elongation factor Tu GTP binding domain CQ11_04795 PF00679 Elongation factor G C-terminus CQ11_04795 PF03144 Elongation factor Tu domain 2 CQ11_04795 PF03764 Elongation factor G, domain IV CQ11_04795 PF14492 Elongation Factor G, domain II CQ11_04800 PF00177 Ribosomal protein S7p/S5e CQ11_04805 PF00164 Ribosomal protein S12/S23 CQ11_04810 PF00324 Amino acid permease CQ11_04815 PF00623 RNA polymerase Rpb1, domain 2 CQ11_04815 PF04983 RNA polymerase Rpb1, domain 3 CQ11_04815 PF04997 RNA polymerase Rpb1, domain 1 CQ11_04815 PF04998 RNA polymerase Rpb1, domain 5 CQ11_04815 PF05000 RNA polymerase Rpb1, domain 4 CQ11_04820 PF00562 RNA polymerase Rpb2, domain 6 CQ11_04820 PF04560 RNA polymerase Rpb2, domain 7 CQ11_04820 PF04561 RNA polymerase Rpb2, domain 2 CQ11_04820 PF04563 RNA polymerase beta subunit CQ11_04820 PF04565 RNA polymerase Rpb2, domain 3 CQ11_04820 PF10385 RNA polymerase beta subunit external 1 domain CQ11_04825 PF00542 Ribosomal protein L7/L12 C-terminal domain CQ11_04825 PF16320 CQ11_04825 CQ11_04830 PF00466 Ribosomal protein L10 CQ11_04835 PF00485 Phosphoribulokinase / Uridine kinase family CQ11_04845 PF00687 Ribosomal protein L1p/L10e family CQ11_04850 PF00298 Ribosomal protein L11, RNA binding domain CQ11_04850 PF03946 Ribosomal protein L11, N-terminal domain CQ11_04855 PF02357 Transcription termination factor nusG CQ11_04860 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CQ11_04870 PF00155 Aminotransferase class I and II CQ11_04875 PF01636 Phosphotransferase enzyme family CQ11_04880 PF00962 Adenosine/AMP deaminase CQ11_04885 PF12697 Alpha/beta hydrolase family CQ11_04895 PF01565 FAD binding domain CQ11_04895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CQ11_04900 PF02388 FemAB family CQ11_04905 PF00471 Ribosomal protein L33 CQ11_04925 PF04461 Protein of unknown function (DUF520) CQ11_04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_04935 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CQ11_04935 PF16321 CQ11_04935 CQ11_04940 PF00156 Phosphoribosyl transferase domain CQ11_04945 PF10646 CQ11_04945 CQ11_04945 PF10647 CQ11_04945 CQ11_04950 PF00512 His Kinase A (phospho-acceptor) domain CQ11_04950 PF00672 HAMP domain CQ11_04950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_04955 PF00072 Response regulator receiver domain CQ11_04955 PF00486 Transcriptional regulatory protein, C terminal CQ11_04965 PF13559 CQ11_04965 CQ11_04975 PF07726 ATPase family associated with various cellular activities (AAA) CQ11_04980 PF01882 CQ11_04980 CQ11_04985 PF01944 CQ11_04985 CQ11_04990 PF06271 CQ11_04990 CQ11_05000 PF12005 CQ11_05000 CQ11_05010 PF13641 Glycosyltransferase like family 2 CQ11_05015 PF02467 CQ11_05015 CQ11_05020 PF00459 Inositol monophosphatase family CQ11_05035 PF00483 Nucleotidyl transferase CQ11_05040 PF04321 RmlD substrate binding domain CQ11_05050 PF00534 Glycosyl transferases group 1 CQ11_05050 PF13579 Glycosyl transferase 4-like domain CQ11_05050 PF13692 Glycosyl transferases group 1 CQ11_05060 PF13641 Glycosyltransferase like family 2 CQ11_05065 PF13692 Glycosyl transferases group 1 CQ11_05070 PF00005 ABC transporter CQ11_05070 PF14524 Wzt C-terminal domain CQ11_05075 PF01061 CQ11_05075 CQ11_05080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CQ11_05080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CQ11_05080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CQ11_05090 PF13579 Glycosyl transferase 4-like domain CQ11_05090 PF13692 Glycosyl transferases group 1 CQ11_05095 PF02350 UDP-N-acetylglucosamine 2-epimerase CQ11_05105 PF00534 Glycosyl transferases group 1 CQ11_05105 PF13439 Glycosyltransferase Family 4 CQ11_05115 PF13439 Glycosyltransferase Family 4 CQ11_05115 PF13692 Glycosyl transferases group 1 CQ11_05125 PF13440 CQ11_05125 CQ11_05130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_05130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_05135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CQ11_05140 PF00132 Bacterial transferase hexapeptide (six repeats) CQ11_05140 PF14602 Hexapeptide repeat of succinyl-transferase CQ11_05145 PF00535 Glycosyl transferase family 2 CQ11_05150 PF10066 CQ11_05150 CQ11_05155 PF16363 CQ11_05155 CQ11_05160 PF00535 Glycosyl transferase family 2 CQ11_05165 PF13641 Glycosyltransferase like family 2 CQ11_05170 PF03816 Cell envelope-related transcriptional attenuator domain CQ11_05175 PF03816 Cell envelope-related transcriptional attenuator domain CQ11_05180 PF04138 CQ11_05180 CQ11_05185 PF00512 His Kinase A (phospho-acceptor) domain CQ11_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_05190 PF00072 Response regulator receiver domain CQ11_05190 PF00486 Transcriptional regulatory protein, C terminal CQ11_05195 PF00211 Adenylate and Guanylate cyclase catalytic domain CQ11_05200 PF05960 Bacterial protein of unknown function (DUF885) CQ11_05205 PF02545 Maf-like protein CQ11_05210 PF13229 Right handed beta helix region CQ11_05215 PF00285 Citrate synthase CQ11_05220 PF00155 Aminotransferase class I and II CQ11_05225 PF00037 4Fe-4S binding domain CQ11_05230 PF04294 CQ11_05230 CQ11_05230 PF12229 Putative peptidoglycan binding domain CQ11_05240 PF00009 Elongation factor Tu GTP binding domain CQ11_05240 PF00679 Elongation factor G C-terminus CQ11_05240 PF03144 Elongation factor Tu domain 2 CQ11_05245 PF10756 CQ11_05245 CQ11_05250 PF00005 ABC transporter CQ11_05250 PF00664 ABC transporter transmembrane region CQ11_05255 PF00005 ABC transporter CQ11_05255 PF00664 ABC transporter transmembrane region CQ11_05265 PF00005 ABC transporter CQ11_05265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_05270 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05270 PF12911 CQ11_05270 CQ11_05275 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05280 PF03099 Biotin/lipoate A/B protein ligase family CQ11_05285 PF04055 Radical SAM superfamily CQ11_05285 PF16881 CQ11_05285 CQ11_05290 PF00501 AMP-binding enzyme CQ11_05290 PF13193 AMP-binding enzyme C-terminal domain CQ11_05295 PF02127 Aminopeptidase I zinc metalloprotease (M18) CQ11_05305 PF00102 Protein-tyrosine phosphatase CQ11_05310 PF03971 Monomeric isocitrate dehydrogenase CQ11_05315 PF04143 CQ11_05315 CQ11_05320 PF01206 Sulfurtransferase TusA CQ11_05325 PF00128 Alpha amylase, catalytic domain CQ11_05325 PF11941 Domain of unknown function (DUF3459) CQ11_05330 PF01055 Glycosyl hydrolases family 31 CQ11_05330 PF13802 Galactose mutarotase-like CQ11_05335 PF13416 Bacterial extracellular solute-binding protein CQ11_05340 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05345 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05350 PF00480 ROK family CQ11_05355 PF13377 Periplasmic binding protein-like domain CQ11_05360 PF13419 Haloacid dehalogenase-like hydrolase CQ11_05370 PF03009 Glycerophosphoryl diester phosphodiesterase family CQ11_05370 PF16387 CQ11_05370 CQ11_05375 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05380 PF00005 ABC transporter CQ11_05380 PF08402 TOBE domain CQ11_05385 PF13343 Bacterial extracellular solute-binding protein CQ11_05395 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_05400 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain CQ11_05405 PF09685 CQ11_05405 CQ11_05410 PF00005 ABC transporter CQ11_05415 PF00005 ABC transporter CQ11_05420 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05425 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_05435 PF01226 Formate/nitrite transporter CQ11_05440 PF13302 Acetyltransferase (GNAT) domain CQ11_05445 PF01327 Polypeptide deformylase CQ11_05450 PF01741 Large-conductance mechanosensitive channel, MscL CQ11_05455 PF00881 Nitroreductase family CQ11_05465 PF13649 Methyltransferase domain CQ11_05470 PF04607 Region found in RelA / SpoT proteins CQ11_05475 PF13508 Acetyltransferase (GNAT) domain CQ11_05480 PF07972 NrdI Flavodoxin like CQ11_05485 PF00268 Ribonucleotide reductase, small chain CQ11_05490 PF03358 NADPH-dependent FMN reductase CQ11_05495 PF00440 Bacterial regulatory proteins, tetR family CQ11_05500 PF07690 Major Facilitator Superfamily CQ11_05505 PF00892 EamA-like transporter family CQ11_05510 PF02274 Amidinotransferase CQ11_05515 PF00696 Amino acid kinase family CQ11_05520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQ11_05520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQ11_05525 PF02274 Amidinotransferase CQ11_05530 PF00356 Bacterial regulatory proteins, lacI family CQ11_05530 PF13377 Periplasmic binding protein-like domain CQ11_05535 PF00128 Alpha amylase, catalytic domain CQ11_05540 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05545 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_05550 PF13416 Bacterial extracellular solute-binding protein CQ11_05555 PF00128 Alpha amylase, catalytic domain CQ11_05560 PF07690 Major Facilitator Superfamily CQ11_05565 PF01546 Peptidase family M20/M25/M40 CQ11_05565 PF07687 Peptidase dimerisation domain CQ11_05570 PF00083 Sugar (and other) transporter CQ11_05575 PF00196 Bacterial regulatory proteins, luxR family CQ11_05585 PF07804 HipA-like C-terminal domain CQ11_05585 PF13657 HipA N-terminal domain CQ11_05590 PF01381 Helix-turn-helix CQ11_05595 PF08867 CQ11_05595 CQ11_05610 PF01926 50S ribosome-binding GTPase CQ11_05610 PF06071 Protein of unknown function (DUF933) CQ11_05615 PF02646 CQ11_05615 CQ11_05620 PF02401 LytB protein CQ11_05625 PF02601 CQ11_05625 CQ11_05625 PF13742 CQ11_05625 CQ11_05630 PF02609 Exonuclease VII small subunit CQ11_05635 PF00294 pfkB family carbohydrate kinase CQ11_05640 PF01255 Putative undecaprenyl diphosphate synthase CQ11_05645 PF03006 CQ11_05645 CQ11_05650 PF02585 GlcNAc-PI de-N-acetylase CQ11_05655 PF01272 Transcription elongation factor, GreA/GreB, C-term CQ11_05655 PF03449 Transcription elongation factor, N-terminal CQ11_05660 PF01625 Peptide methionine sulfoxide reductase CQ11_05670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQ11_05675 PF00474 Sodium:solute symporter family CQ11_05680 PF00171 Aldehyde dehydrogenase family CQ11_05680 PF01619 Proline dehydrogenase CQ11_05695 PF00005 ABC transporter CQ11_05700 PF00392 Bacterial regulatory proteins, gntR family CQ11_05705 PF12811 CQ11_05705 CQ11_05715 PF00005 ABC transporter CQ11_05730 PF06965 Na+/H+ antiporter 1 CQ11_05735 PF02541 Ppx/GppA phosphatase family CQ11_05740 PF04417 CQ11_05740 CQ11_05745 PF04977 Septum formation initiator CQ11_05750 PF00113 Enolase, C-terminal TIM barrel domain CQ11_05750 PF03952 Enolase, N-terminal domain CQ11_05755 PF01156 Inosine-uridine preferring nucleoside hydrolase CQ11_05760 PF00270 DEAD/DEAH box helicase CQ11_05760 PF00271 Helicase conserved C-terminal domain CQ11_05760 PF02559 CarD-like/TRCF domain CQ11_05760 PF03461 TRCF domain CQ11_05765 PF01195 Peptidyl-tRNA hydrolase CQ11_05770 PF01386 Ribosomal L25p family CQ11_05770 PF14693 Ribosomal protein TL5, C-terminal domain CQ11_05775 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CQ11_05775 PF14572 Phosphoribosyl synthetase-associated domain CQ11_05780 PF12804 MobA-like NTP transferase domain CQ11_05790 PF00440 Bacterial regulatory proteins, tetR family CQ11_05800 PF13601 Winged helix DNA-binding domain CQ11_05805 PF00005 ABC transporter CQ11_05805 PF13732 CQ11_05805 CQ11_05810 PF12698 ABC-2 family transporter protein CQ11_05815 PF12802 MarR family CQ11_05820 PF00005 ABC transporter CQ11_05820 PF12848 ABC transporter CQ11_05825 PF00288 GHMP kinases N terminal domain CQ11_05825 PF08544 GHMP kinases C terminal CQ11_05830 PF00398 Ribosomal RNA adenine dimethylase CQ11_05835 PF01464 Transglycosylase SLT domain CQ11_05845 PF01026 TatD related DNase CQ11_05850 PF09334 tRNA synthetases class I (M) CQ11_05860 PF00665 Integrase core domain CQ11_05860 PF13276 CQ11_05860 CQ11_05885 PF01695 IstB-like ATP binding protein CQ11_05895 PF08341 Fibronectin-binding protein signal sequence CQ11_05900 PF00857 Isochorismatase family CQ11_05905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQ11_05915 PF06262 Possibl zinc metallo-peptidase CQ11_05920 PF13231 CQ11_05920 CQ11_05920 PF16192 CQ11_05920 CQ11_05925 PF01053 Cys/Met metabolism PLP-dependent enzyme CQ11_05940 PF02635 DsrE/DsrF-like family CQ11_05945 PF00005 ABC transporter CQ11_05960 PF05175 Methyltransferase small domain CQ11_05965 PF02028 BCCT family transporter CQ11_05970 PF01594 CQ11_05970 CQ11_05975 PF06197 CQ11_05975 CQ11_05980 PF12697 Alpha/beta hydrolase family CQ11_05985 PF00152 tRNA synthetases class II (D, K and N) CQ11_05985 PF01336 OB-fold nucleic acid binding domain CQ11_05985 PF09924 Uncharacterized conserved protein (DUF2156) CQ11_05985 PF16995 CQ11_05985 CQ11_05990 PF02652 CQ11_05990 CQ11_05995 PF02754 CQ11_05995 CQ11_06000 PF02589 Uncharacterised ACR, YkgG family COG1556 CQ11_06000 PF13183 4Fe-4S dicluster domain CQ11_06005 PF02589 Uncharacterised ACR, YkgG family COG1556 CQ11_06025 PF00381 PTS HPr component phosphorylation site CQ11_06030 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CQ11_06035 PF00367 phosphotransferase system, EIIB CQ11_06035 PF02378 Phosphotransferase system, EIIC CQ11_06055 PF00293 NUDIX domain CQ11_06055 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal CQ11_06060 PF07853 CQ11_06060 CQ11_06065 PF00391 PEP-utilising enzyme, mobile domain CQ11_06065 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_06065 PF05524 PEP-utilising enzyme, N-terminal CQ11_06070 PF00381 PTS HPr component phosphorylation site CQ11_06075 PF00874 PRD domain CQ11_06075 PF03123 CAT RNA binding domain CQ11_06080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CQ11_06080 PF00367 phosphotransferase system, EIIB CQ11_06080 PF02378 Phosphotransferase system, EIIC CQ11_06090 PF12698 ABC-2 family transporter protein CQ11_06095 PF00005 ABC transporter CQ11_06100 PF05167 Uncharacterised ACR (DUF711) CQ11_06105 PF13740 ACT domain CQ11_06110 PF07690 Major Facilitator Superfamily CQ11_06120 PF00444 Ribosomal protein L36 CQ11_06125 PF01197 Ribosomal protein L31 CQ11_06130 PF00253 Ribosomal protein S14p/S29e CQ11_06135 PF00471 Ribosomal protein L33 CQ11_06140 PF00830 Ribosomal L28 family CQ11_06145 PF07683 Cobalamin synthesis protein cobW C-terminal domain CQ11_06150 PF11361 CQ11_06150 CQ11_06155 PF00083 Sugar (and other) transporter CQ11_06160 PF07859 alpha/beta hydrolase fold CQ11_06160 PF12146 Putative lysophospholipase CQ11_06165 PF00392 Bacterial regulatory proteins, gntR family CQ11_06165 PF07702 UTRA domain CQ11_06170 PF00005 ABC transporter CQ11_06175 PF01032 FecCD transport family CQ11_06180 PF01032 FecCD transport family CQ11_06185 PF01497 Periplasmic binding protein CQ11_06195 PF02861 Clp amino terminal domain CQ11_06195 PF10604 Polyketide cyclase / dehydrase and lipid transport CQ11_06200 PF12697 Alpha/beta hydrolase family CQ11_06210 PF04954 Siderophore-interacting protein CQ11_06210 PF08021 Siderophore-interacting FAD-binding domain CQ11_06225 PF10604 Polyketide cyclase / dehydrase and lipid transport CQ11_06245 PF00994 Probable molybdopterin binding domain CQ11_06245 PF03453 MoeA N-terminal region (domain I and II) CQ11_06245 PF03454 MoeA C-terminal region (domain IV) CQ11_06250 PF01812 5-formyltetrahydrofolate cyclo-ligase family CQ11_06255 PF13144 SAF-like CQ11_06270 PF12686 CQ11_06270 CQ11_06280 PF00582 Universal stress protein family CQ11_06285 PF00877 NlpC/P60 family CQ11_06290 PF01325 Iron dependent repressor, N-terminal DNA binding domain CQ11_06290 PF02742 Iron dependent repressor, metal binding and dimerisation domain CQ11_06290 PF04023 FeoA domain CQ11_06295 PF00266 Aminotransferase class-V CQ11_06300 PF00860 Permease family CQ11_06305 PF01238 Phosphomannose isomerase type I CQ11_06310 PF11228 CQ11_06310 CQ11_06315 PF00313 'Cold-shock' DNA-binding domain CQ11_06325 PF04012 CQ11_06325 CQ11_06335 PF00072 Response regulator receiver domain CQ11_06335 PF00486 Transcriptional regulatory protein, C terminal CQ11_06340 PF00512 His Kinase A (phospho-acceptor) domain CQ11_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_06345 PF01553 Acyltransferase CQ11_06350 PF00106 short chain dehydrogenase CQ11_06360 PF00118 TCP-1/cpn60 chaperonin family CQ11_06365 PF13399 LytR cell envelope-related transcriptional attenuator CQ11_06370 PF11662 CQ11_06370 CQ11_06375 PF03167 Uracil DNA glycosylase superfamily CQ11_06385 PF07690 Major Facilitator Superfamily CQ11_06400 PF13462 Thioredoxin CQ11_06405 PF00069 Protein kinase domain CQ11_06410 PF00005 ABC transporter CQ11_06415 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family CQ11_06415 PF13224 CQ11_06415 CQ11_06420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_06420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_06425 PF00480 ROK family CQ11_06425 PF12802 MarR family CQ11_06430 PF13416 Bacterial extracellular solute-binding protein CQ11_06440 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_06445 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_06450 PF13320 CQ11_06450 CQ11_06455 PF04480 Protein of unknown function (DUF559) CQ11_06460 PF01118 Semialdehyde dehydrogenase, NAD binding domain CQ11_06460 PF02774 Semialdehyde dehydrogenase, dimerisation domain CQ11_06465 PF00696 Amino acid kinase family CQ11_06465 PF01842 ACT domain CQ11_06465 PF13840 ACT domain CQ11_06470 PF00633 Helix-hairpin-helix motif CQ11_06470 PF02132 RecR protein CQ11_06470 PF13662 Toprim domain CQ11_06475 PF12169 DNA polymerase III subunits gamma and tau domain III CQ11_06475 PF13177 DNA polymerase III, delta subunit CQ11_06480 PF04328 CQ11_06480 CQ11_06485 PF02554 CQ11_06485 CQ11_06485 PF13722 CQ11_06485 CQ11_06490 PF02517 CAAX protease self-immunity CQ11_06500 PF13399 LytR cell envelope-related transcriptional attenuator CQ11_06505 PF00860 Permease family CQ11_06510 PF04266 ASCH domain CQ11_06520 PF00588 SpoU rRNA Methylase family CQ11_06520 PF08032 RNA 2'-O ribose methyltransferase substrate binding CQ11_06525 PF01406 tRNA synthetases class I (C) catalytic domain CQ11_06525 PF09190 DALR domain CQ11_06530 PF11700 CQ11_06530 CQ11_06535 PF00005 ABC transporter CQ11_06540 PF04198 Putative sugar-binding domain CQ11_06545 PF02734 DAK2 domain CQ11_06550 PF02733 Dak1 domain CQ11_06555 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_06560 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_06565 PF03611 CQ11_06565 CQ11_06570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CQ11_06575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CQ11_06580 PF01263 Aldose 1-epimerase CQ11_06585 PF13707 CQ11_06585 CQ11_06590 PF13304 AAA domain CQ11_06595 PF02542 YgbB family CQ11_06600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CQ11_06610 PF00072 Response regulator receiver domain CQ11_06610 PF00486 Transcriptional regulatory protein, C terminal CQ11_06615 PF00512 His Kinase A (phospho-acceptor) domain CQ11_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_06620 PF01895 PhoU domain CQ11_06625 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_06630 PF04203 Sortase family CQ11_06635 PF04203 Sortase family CQ11_06645 PF01345 CQ11_06645 CQ11_06650 PF04299 Putative FMN-binding domain CQ11_06660 PF07690 Major Facilitator Superfamily CQ11_06665 PF01497 Periplasmic binding protein CQ11_06670 PF00005 ABC transporter CQ11_06675 PF01032 FecCD transport family CQ11_06690 PF00884 Sulfatase CQ11_06695 PF00884 Sulfatase CQ11_06710 PF00762 Ferrochelatase CQ11_06715 PF00248 Aldo/keto reductase family CQ11_06725 PF01487 Type I 3-dehydroquinase CQ11_06735 PF13519 von Willebrand factor type A domain CQ11_06740 PF00092 von Willebrand factor type A domain CQ11_06750 PF01882 CQ11_06750 CQ11_06755 PF07726 ATPase family associated with various cellular activities (AAA) CQ11_06765 PF14256 CQ11_06765 CQ11_06770 PF00155 Aminotransferase class I and II CQ11_06775 PF04020 CQ11_06775 CQ11_06780 PF00206 Lyase CQ11_06780 PF08328 Adenylosuccinate lyase C-terminal CQ11_06785 PF09335 CQ11_06785 CQ11_06795 PF00403 Heavy-metal-associated domain CQ11_06800 PF00122 E1-E2 ATPase CQ11_06800 PF00403 Heavy-metal-associated domain CQ11_06800 PF00702 haloacid dehalogenase-like hydrolase CQ11_06805 PF03706 CQ11_06805 CQ11_06810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_06810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_06810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_06810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_06815 PF00440 Bacterial regulatory proteins, tetR family CQ11_06820 PF00005 ABC transporter CQ11_06820 PF00664 ABC transporter transmembrane region CQ11_06825 PF00005 ABC transporter CQ11_06825 PF00664 ABC transporter transmembrane region CQ11_06830 PF00005 ABC transporter CQ11_06835 PF02361 Cobalt transport protein CQ11_06840 PF09605 CQ11_06840 CQ11_06845 PF00107 Zinc-binding dehydrogenase CQ11_06845 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_06855 PF07690 Major Facilitator Superfamily CQ11_06860 PF00459 Inositol monophosphatase family CQ11_06865 PF13407 Periplasmic binding protein domain CQ11_06870 PF02653 CQ11_06870 CQ11_06875 PF00005 ABC transporter CQ11_06880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_06880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_06885 PF01261 Xylose isomerase-like TIM barrel CQ11_06890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_06890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_06895 PF00923 Transaldolase CQ11_06900 PF00392 Bacterial regulatory proteins, gntR family CQ11_06900 PF07702 UTRA domain CQ11_06905 PF00294 pfkB family carbohydrate kinase CQ11_06915 PF04962 KduI/IolB family CQ11_06920 PF00205 Thiamine pyrophosphate enzyme, central domain CQ11_06920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_06920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_06925 PF00171 Aldehyde dehydrogenase family CQ11_06930 PF00005 ABC transporter CQ11_06935 PF01032 FecCD transport family CQ11_06940 PF01032 FecCD transport family CQ11_06945 PF01497 Periplasmic binding protein CQ11_06950 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CQ11_06950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQ11_06955 PF00480 ROK family CQ11_06955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_06955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_06960 PF13416 Bacterial extracellular solute-binding protein CQ11_06965 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_06970 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_06975 PF00107 Zinc-binding dehydrogenase CQ11_06975 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_06980 PF00155 Aminotransferase class I and II CQ11_06985 PF06808 CQ11_06985 CQ11_06990 PF04290 CQ11_06990 CQ11_06995 PF03480 Bacterial extracellular solute-binding protein, family 7 CQ11_07000 PF02614 Glucuronate isomerase CQ11_07005 PF08341 Fibronectin-binding protein signal sequence CQ11_07015 PF03932 CutC family CQ11_07020 PF07171 MlrC C-terminus CQ11_07020 PF07364 Protein of unknown function (DUF1485) CQ11_07025 PF01120 Alpha-L-fucosidase CQ11_07030 PF00480 ROK family CQ11_07035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_07040 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07045 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07045 PF12911 CQ11_07045 CQ11_07050 PF00005 ABC transporter CQ11_07050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_07055 PF00480 ROK family CQ11_07060 PF00480 ROK family CQ11_07065 PF01547 Bacterial extracellular solute-binding protein CQ11_07070 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07075 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07080 PF09508 Lacto-N-biose phosphorylase CQ11_07080 PF17385 CQ11_07080 CQ11_07080 PF17386 CQ11_07080 CQ11_07085 PF01636 Phosphotransferase enzyme family CQ11_07135 PF13614 AAA domain CQ11_07145 PF00589 Phage integrase family CQ11_07150 PF04326 Divergent AAA domain CQ11_07150 PF13749 ATP-dependent DNA helicase recG C-terminal CQ11_07155 PF00005 ABC transporter CQ11_07155 PF00664 ABC transporter transmembrane region CQ11_07160 PF00005 ABC transporter CQ11_07160 PF00664 ABC transporter transmembrane region CQ11_07165 PF00005 ABC transporter CQ11_07170 PF02361 Cobalt transport protein CQ11_07175 PF09605 CQ11_07175 CQ11_07185 PF00939 Sodium:sulfate symporter transmembrane region CQ11_07200 PF00293 NUDIX domain CQ11_07205 PF16654 CQ11_07205 CQ11_07210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQ11_07215 PF00005 ABC transporter CQ11_07220 PF02653 CQ11_07220 CQ11_07225 PF02653 CQ11_07225 CQ11_07230 PF13407 Periplasmic binding protein domain CQ11_07235 PF04198 Putative sugar-binding domain CQ11_07240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_07240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_07245 PF07883 Cupin domain CQ11_07250 PF01791 DeoC/LacD family aldolase CQ11_07255 PF01695 IstB-like ATP binding protein CQ11_07270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_07275 PF01661 Macro domain CQ11_07280 PF00881 Nitroreductase family CQ11_07300 PF08212 Lipocalin-like domain CQ11_07305 PF13173 AAA domain CQ11_07305 PF13635 CQ11_07305 CQ11_07310 PF05958 tRNA (Uracil-5-)-methyltransferase CQ11_07315 PF00270 DEAD/DEAH box helicase CQ11_07315 PF00271 Helicase conserved C-terminal domain CQ11_07315 PF04408 Helicase associated domain (HA2) CQ11_07315 PF08482 CQ11_07315 CQ11_07320 PF00440 Bacterial regulatory proteins, tetR family CQ11_07325 PF02080 TrkA-C domain CQ11_07325 PF02254 TrkA-N domain CQ11_07330 PF02386 Cation transport protein CQ11_07350 PF00440 Bacterial regulatory proteins, tetR family CQ11_07355 PF11070 CQ11_07355 CQ11_07360 PF01471 Putative peptidoglycan binding domain CQ11_07370 PF00072 Response regulator receiver domain CQ11_07370 PF00486 Transcriptional regulatory protein, C terminal CQ11_07385 PF02592 CQ11_07385 CQ11_07390 PF01712 Deoxynucleoside kinase CQ11_07395 PF14080 CQ11_07395 CQ11_07400 PF16107 CQ11_07400 CQ11_07410 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_07410 PF00585 C-terminal regulatory domain of Threonine dehydratase CQ11_07415 PF13462 Thioredoxin CQ11_07420 PF01553 Acyltransferase CQ11_07425 PF00561 alpha/beta hydrolase fold CQ11_07430 PF00248 Aldo/keto reductase family CQ11_07435 PF08543 Phosphomethylpyrimidine kinase CQ11_07440 PF01966 HD domain CQ11_07450 PF00899 ThiF family CQ11_07455 PF01026 TatD related DNase CQ11_07460 PF05977 Transmembrane secretion effector CQ11_07465 PF00772 DnaB-like helicase N terminal domain CQ11_07465 PF03796 DnaB-like helicase C terminal domain CQ11_07475 PF01554 MatE CQ11_07480 PF02872 5'-nucleotidase, C-terminal domain CQ11_07485 PF01281 Ribosomal protein L9, N-terminal domain CQ11_07485 PF03948 Ribosomal protein L9, C-terminal domain CQ11_07490 PF01084 Ribosomal protein S18 CQ11_07495 PF00436 Single-strand binding protein family CQ11_07500 PF01250 Ribosomal protein S6 CQ11_07505 PF00905 Penicillin binding protein transpeptidase domain CQ11_07505 PF00912 Transglycosylase CQ11_07510 PF01594 CQ11_07510 CQ11_07520 PF01743 Poly A polymerase head domain CQ11_07520 PF01966 HD domain CQ11_07520 PF12627 Probable RNA and SrmB- binding site of polymerase A CQ11_07525 PF00293 NUDIX domain CQ11_07540 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_07545 PF00155 Aminotransferase class I and II CQ11_07550 PF01820 D-ala D-ala ligase N-terminus CQ11_07550 PF07478 D-ala D-ala ligase C-terminus CQ11_07555 PF02195 ParB-like nuclease domain CQ11_07560 PF13614 AAA domain CQ11_07565 PF02527 rRNA small subunit methyltransferase G CQ11_07570 PF01424 R3H domain CQ11_07575 PF02096 60Kd inner membrane protein CQ11_07585 PF00825 Ribonuclease P CQ11_07590 PF00468 Ribosomal protein L34 CQ11_07595 PF00308 Bacterial dnaA protein CQ11_07595 PF08299 Bacterial dnaA protein helix-turn-helix CQ11_07600 PF00712 DNA polymerase III beta subunit, N-terminal domain CQ11_07600 PF02767 DNA polymerase III beta subunit, central domain CQ11_07600 PF02768 DNA polymerase III beta subunit, C-terminal domain CQ11_07605 PF02463 RecF/RecN/SMC N terminal domain CQ11_07610 PF05258 CQ11_07610 CQ11_07615 PF00204 DNA gyrase B CQ11_07615 PF00986 DNA gyrase B subunit, carboxyl terminus CQ11_07615 PF01751 Toprim domain CQ11_07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_07620 PF00521 DNA gyrase/topoisomerase IV, subunit A CQ11_07620 PF03989 DNA gyrase C-terminal domain, beta-propeller CQ11_07625 PF12089 CQ11_07625 CQ11_07645 PF02655 ATP-grasp domain CQ11_07650 PF02388 FemAB family CQ11_07660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CQ11_07665 PF01694 Rhomboid family CQ11_07670 PF06781 CQ11_07670 CQ11_07675 PF04203 Sortase family CQ11_07685 PF00069 Protein kinase domain CQ11_07685 PF03793 PASTA domain CQ11_07690 PF00905 Penicillin binding protein transpeptidase domain CQ11_07695 PF01098 CQ11_07695 CQ11_07700 PF13672 Protein phosphatase 2C CQ11_07705 PF00498 FHA domain CQ11_07710 PF12401 Protein of unknown function (DUF2662) CQ11_07710 PF16697 CQ11_07710 CQ11_07720 PF00326 Prolyl oligopeptidase family CQ11_07720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CQ11_07725 PF01323 DSBA-like thioredoxin domain CQ11_07730 PF00075 RNase H CQ11_07740 PF01661 Macro domain CQ11_07745 PF01048 Phosphorylase superfamily CQ11_07750 PF02664 S-Ribosylhomocysteinase (LuxS) CQ11_07755 PF01475 Ferric uptake regulator family CQ11_07760 PF00462 Glutaredoxin CQ11_07765 PF07972 NrdI Flavodoxin like CQ11_07770 PF00317 Ribonucleotide reductase, all-alpha domain CQ11_07770 PF02867 Ribonucleotide reductase, barrel domain CQ11_07770 PF08343 Ribonucleotide reductase N-terminal CQ11_07775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CQ11_07780 PF04235 CQ11_07780 CQ11_07780 PF07786 CQ11_07780 CQ11_07785 PF00268 Ribonucleotide reductase, small chain CQ11_07790 PF01451 Low molecular weight phosphotyrosine protein phosphatase CQ11_07800 PF01547 Bacterial extracellular solute-binding protein CQ11_07805 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07810 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07815 PF04480 Protein of unknown function (DUF559) CQ11_07825 PF10263 CQ11_07825 CQ11_07830 PF13738 Pyridine nucleotide-disulphide oxidoreductase CQ11_07845 PF00271 Helicase conserved C-terminal domain CQ11_07845 PF04408 Helicase associated domain (HA2) CQ11_07845 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CQ11_07845 PF11898 CQ11_07845 CQ11_07850 PF00072 Response regulator receiver domain CQ11_07850 PF00196 Bacterial regulatory proteins, luxR family CQ11_07855 PF07730 Histidine kinase CQ11_07865 PF00005 ABC transporter CQ11_07875 PF00005 ABC transporter CQ11_07880 PF07730 Histidine kinase CQ11_07885 PF00072 Response regulator receiver domain CQ11_07885 PF00196 Bacterial regulatory proteins, luxR family CQ11_07890 PF01263 Aldose 1-epimerase CQ11_07895 PF13597 Anaerobic ribonucleoside-triphosphate reductase CQ11_07900 PF13353 4Fe-4S single cluster domain CQ11_07905 PF01757 CQ11_07905 CQ11_07910 PF07242 CQ11_07910 CQ11_07915 PF00005 ABC transporter CQ11_07920 PF01614 Bacterial transcriptional regulator CQ11_07920 PF09339 IclR helix-turn-helix domain CQ11_07925 PF01232 Mannitol dehydrogenase Rossmann domain CQ11_07925 PF08125 Mannitol dehydrogenase C-terminal domain CQ11_07930 PF03786 D-mannonate dehydratase (UxuA) CQ11_07935 PF01081 KDPG and KHG aldolase CQ11_07940 PF00294 pfkB family carbohydrate kinase CQ11_07945 PF00005 ABC transporter CQ11_07950 PF01497 Periplasmic binding protein CQ11_07955 PF01032 FecCD transport family CQ11_07960 PF00005 ABC transporter CQ11_07960 PF00664 ABC transporter transmembrane region CQ11_07965 PF00005 ABC transporter CQ11_07965 PF00664 ABC transporter transmembrane region CQ11_07970 PF00356 Bacterial regulatory proteins, lacI family CQ11_07970 PF13377 Periplasmic binding protein-like domain CQ11_07975 PF02065 Melibiase CQ11_07980 PF13416 Bacterial extracellular solute-binding protein CQ11_07985 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07990 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_07995 PF00722 Glycosyl hydrolases family 16 CQ11_07995 PF00754 F5/8 type C domain CQ11_08010 PF08681 Protein of unknown function (DUF1778) CQ11_08015 PF05016 Plasmid stabilisation system protein CQ11_08020 PF01420 Type I restriction modification DNA specificity domain CQ11_08025 PF00872 CQ11_08025 CQ11_08040 PF02384 N-6 DNA Methylase CQ11_08040 PF12161 HsdM N-terminal domain CQ11_08045 PF00288 GHMP kinases N terminal domain CQ11_08045 PF08544 GHMP kinases C terminal CQ11_08045 PF10509 Galactokinase galactose-binding signature CQ11_08050 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_08060 PF09949 CQ11_08060 CQ11_08070 PF00005 ABC transporter CQ11_08075 PF02653 CQ11_08075 CQ11_08080 PF13407 Periplasmic binding protein domain CQ11_08085 PF00294 pfkB family carbohydrate kinase CQ11_08090 PF02056 Family 4 glycosyl hydrolase CQ11_08090 PF11975 Family 4 glycosyl hydrolase C-terminal domain CQ11_08095 PF00872 CQ11_08095 CQ11_08140 PF12840 Helix-turn-helix domain CQ11_08145 PF07690 Major Facilitator Superfamily CQ11_08155 PF08282 haloacid dehalogenase-like hydrolase CQ11_08160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_08160 PF02403 Seryl-tRNA synthetase N-terminal domain CQ11_08165 PF00781 Diacylglycerol kinase catalytic domain CQ11_08170 PF04909 Amidohydrolase CQ11_08175 PF00800 Prephenate dehydratase CQ11_08185 PF00535 Glycosyl transferase family 2 CQ11_08195 PF12146 Putative lysophospholipase CQ11_08200 PF14681 Uracil phosphoribosyltransferase CQ11_08205 PF14437 CQ11_08205 CQ11_08215 PF05525 CQ11_08215 CQ11_08220 PF08903 Domain of unknown function (DUF1846) CQ11_08225 PF00122 E1-E2 ATPase CQ11_08225 PF00702 haloacid dehalogenase-like hydrolase CQ11_08230 PF02597 ThiS family CQ11_08235 PF00899 ThiF family CQ11_08245 PF04203 Sortase family CQ11_08265 PF00005 ABC transporter CQ11_08265 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_08265 PF03459 TOBE domain CQ11_08270 PF13531 Bacterial extracellular solute-binding protein CQ11_08275 PF00994 Probable molybdopterin binding domain CQ11_08280 PF00994 Probable molybdopterin binding domain CQ11_08280 PF03453 MoeA N-terminal region (domain I and II) CQ11_08280 PF03454 MoeA C-terminal region (domain IV) CQ11_08285 PF01967 MoaC family CQ11_08290 PF02391 MoaE protein CQ11_08295 PF04055 Radical SAM superfamily CQ11_08295 PF06463 Molybdenum Cofactor Synthesis C CQ11_08295 PF13353 4Fe-4S single cluster domain CQ11_08305 PF00128 Alpha amylase, catalytic domain CQ11_08315 PF12850 Calcineurin-like phosphoesterase superfamily domain CQ11_08320 PF00905 Penicillin binding protein transpeptidase domain CQ11_08320 PF00912 Transglycosylase CQ11_08320 PF03793 PASTA domain CQ11_08325 PF02467 CQ11_08325 CQ11_08330 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease CQ11_08340 PF02661 Fic/DOC family CQ11_08345 PF00027 Cyclic nucleotide-binding domain CQ11_08345 PF13545 Crp-like helix-turn-helix domain CQ11_08370 PF00437 Type II/IV secretion system protein CQ11_08380 PF00482 Type II secretion system (T2SS), protein F CQ11_08400 PF00270 DEAD/DEAH box helicase CQ11_08400 PF00271 Helicase conserved C-terminal domain CQ11_08400 PF09369 CQ11_08400 CQ11_08405 PF13443 Cro/C1-type HTH DNA-binding domain CQ11_08410 PF11188 CQ11_08410 CQ11_08415 PF05175 Methyltransferase small domain CQ11_08420 PF01131 DNA topoisomerase CQ11_08420 PF01751 Toprim domain CQ11_08420 PF13368 CQ11_08420 CQ11_08425 PF02223 Thymidylate kinase CQ11_08430 PF13177 DNA polymerase III, delta subunit CQ11_08435 PF00561 alpha/beta hydrolase fold CQ11_08445 PF07508 Recombinase CQ11_08445 PF13408 Recombinase zinc beta ribbon domain CQ11_08450 PF13173 AAA domain CQ11_08450 PF13635 CQ11_08450 CQ11_08460 PF08020 Protein of unknown function (DUF1706) CQ11_08465 PF07690 Major Facilitator Superfamily CQ11_08470 PF00440 Bacterial regulatory proteins, tetR family CQ11_08470 PF02909 Tetracyclin repressor, C-terminal all-alpha domain CQ11_08480 PF04860 Phage portal protein CQ11_08495 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CQ11_08500 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CQ11_08500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQ11_08500 PF04039 CQ11_08500 CQ11_08500 PF13244 CQ11_08500 CQ11_08505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQ11_08510 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CQ11_08515 PF01899 CQ11_08515 CQ11_08520 PF04066 CQ11_08520 CQ11_08525 PF03334 CQ11_08525 CQ11_08530 PF14019 CQ11_08530 CQ11_08535 PF13343 Bacterial extracellular solute-binding protein CQ11_08540 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_08560 PF07690 Major Facilitator Superfamily CQ11_08565 PF07883 Cupin domain CQ11_08575 PF04014 Antidote-toxin recognition MazE CQ11_08580 PF12804 MobA-like NTP transferase domain CQ11_08585 PF13191 AAA ATPase domain CQ11_08590 PF00730 HhH-GPD superfamily base excision DNA repair protein CQ11_08605 PF00480 ROK family CQ11_08610 PF03649 CQ11_08610 CQ11_08615 PF02613 Nitrate reductase delta subunit CQ11_08620 PF00326 Prolyl oligopeptidase family CQ11_08620 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CQ11_08625 PF04976 CQ11_08625 CQ11_08630 PF13247 4Fe-4S dicluster domain CQ11_08635 PF00384 Molybdopterin oxidoreductase CQ11_08635 PF01568 Molydopterin dinucleotide binding domain CQ11_08635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CQ11_08640 PF02583 Metal-sensitive transcriptional repressor CQ11_08645 PF00581 Rhodanese-like domain CQ11_08645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_08645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_08650 PF00440 Bacterial regulatory proteins, tetR family CQ11_08655 PF00156 Phosphoribosyl transferase domain CQ11_08660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQ11_08660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQ11_08665 PF01979 Amidohydrolase family CQ11_08670 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CQ11_08675 PF00156 Phosphoribosyl transferase domain CQ11_08680 PF01180 Dihydroorotate dehydrogenase CQ11_08685 PF00012 Hsp70 protein CQ11_08690 PF01025 GrpE CQ11_08695 PF00226 DnaJ domain CQ11_08695 PF01556 DnaJ C terminal domain CQ11_08700 PF13411 MerR HTH family regulatory protein CQ11_08705 PF00293 NUDIX domain CQ11_08710 PF01839 FG-GAP repeat CQ11_08710 PF12799 Leucine Rich repeats (2 copies) CQ11_08710 PF13855 Leucine rich repeat CQ11_08715 PF07690 Major Facilitator Superfamily CQ11_08720 PF03009 Glycerophosphoryl diester phosphodiesterase family CQ11_08730 PF00326 Prolyl oligopeptidase family CQ11_08735 PF00932 Lamin Tail Domain CQ11_08735 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_08740 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQ11_08745 PF14013 CQ11_08745 CQ11_08750 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_08750 PF02861 Clp amino terminal domain CQ11_08750 PF07724 AAA domain (Cdc48 subfamily) CQ11_08750 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_08755 PF05154 CQ11_08755 CQ11_08760 PF00144 Beta-lactamase CQ11_08765 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_08770 PF00106 short chain dehydrogenase CQ11_08780 PF00293 NUDIX domain CQ11_08780 PF00588 SpoU rRNA Methylase family CQ11_08790 PF01384 CQ11_08790 CQ11_08795 PF01116 Fructose-bisphosphate aldolase class-II CQ11_08805 PF00709 Adenylosuccinate synthetase CQ11_08810 PF00821 Phosphoenolpyruvate carboxykinase CQ11_08810 PF17297 CQ11_08810 CQ11_08815 PF01259 SAICAR synthetase CQ11_08820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQ11_08820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CQ11_08830 PF11273 CQ11_08830 CQ11_08835 PF12728 Helix-turn-helix domain CQ11_08840 PF12277 CQ11_08840 CQ11_08845 PF07332 CQ11_08845 CQ11_08850 PF02028 BCCT family transporter CQ11_08860 PF05738 Cna protein B-type domain CQ11_08865 PF00092 von Willebrand factor type A domain CQ11_08870 PF16555 CQ11_08870 CQ11_08875 PF00746 CQ11_08875 CQ11_08880 PF04203 Sortase family CQ11_08885 PF00056 lactate/malate dehydrogenase, NAD binding domain CQ11_08885 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CQ11_08890 PF03023 CQ11_08890 CQ11_08910 PF00924 Mechanosensitive ion channel CQ11_08915 PF01641 SelR domain CQ11_08920 PF03372 Endonuclease/Exonuclease/phosphatase family CQ11_08925 PF00892 EamA-like transporter family CQ11_08940 PF02503 Polyphosphate kinase middle domain CQ11_08940 PF13089 Polyphosphate kinase N-terminal domain CQ11_08940 PF13090 Polyphosphate kinase C-terminal domain CQ11_08945 PF00293 NUDIX domain CQ11_08945 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_08950 PF12849 PBP superfamily domain CQ11_08955 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_08960 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_08965 PF00005 ABC transporter CQ11_08970 PF01384 CQ11_08970 CQ11_08975 PF01865 Protein of unknown function DUF47 CQ11_08980 PF01235 CQ11_08980 CQ11_08985 PF02517 CAAX protease self-immunity CQ11_08990 PF02872 5'-nucleotidase, C-terminal domain CQ11_09000 PF08768 Domain of unknown function (DUF1794) CQ11_09005 PF01571 Aminomethyltransferase folate-binding domain CQ11_09005 PF08669 Glycine cleavage T-protein C-terminal barrel domain CQ11_09010 PF10724 CQ11_09010 CQ11_09015 PF02580 D-Tyr-tRNA(Tyr) deacylase CQ11_09020 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_09020 PF02151 UvrB/uvrC motif CQ11_09020 PF02861 Clp amino terminal domain CQ11_09020 PF07724 AAA domain (Cdc48 subfamily) CQ11_09020 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_09040 PF14486 Domain of unknown function (DUF4432) CQ11_09045 PF07690 Major Facilitator Superfamily CQ11_09050 PF04198 Putative sugar-binding domain CQ11_09060 PF13242 HAD-hyrolase-like CQ11_09060 PF13344 Haloacid dehalogenase-like hydrolase CQ11_09065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_09065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_09070 PF00455 CQ11_09070 CQ11_09070 PF08220 DeoR-like helix-turn-helix domain CQ11_09075 PF13685 Iron-containing alcohol dehydrogenase CQ11_09080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_09080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_09085 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_09090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_09090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_09095 PF02733 Dak1 domain CQ11_09095 PF02734 DAK2 domain CQ11_09100 PF00107 Zinc-binding dehydrogenase CQ11_09100 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_09105 PF02502 Ribose/Galactose Isomerase CQ11_09110 PF01925 CQ11_09110 CQ11_09115 PF04055 Radical SAM superfamily CQ11_09115 PF13186 Iron-sulfur cluster-binding domain CQ11_09120 PF00083 Sugar (and other) transporter CQ11_09125 PF13377 Periplasmic binding protein-like domain CQ11_09130 PF00884 Sulfatase CQ11_09140 PF01402 Ribbon-helix-helix protein, copG family CQ11_09145 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09150 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09155 PF13416 Bacterial extracellular solute-binding protein CQ11_09160 PF01055 Glycosyl hydrolases family 31 CQ11_09160 PF13802 Galactose mutarotase-like CQ11_09165 PF00455 CQ11_09165 CQ11_09165 PF08220 DeoR-like helix-turn-helix domain CQ11_09170 PF13416 Bacterial extracellular solute-binding protein CQ11_09175 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09180 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09185 PF01116 Fructose-bisphosphate aldolase class-II CQ11_09190 PF04587 ADP-specific Phosphofructokinase/Glucokinase conserved region CQ11_09195 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) CQ11_09205 PF01261 Xylose isomerase-like TIM barrel CQ11_09210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_09210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_09215 PF13407 Periplasmic binding protein domain CQ11_09225 PF02653 CQ11_09225 CQ11_09230 PF00155 Aminotransferase class I and II CQ11_09235 PF03553 CQ11_09235 CQ11_09240 PF01263 Aldose 1-epimerase CQ11_09245 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_09245 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_09250 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09255 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09260 PF13416 Bacterial extracellular solute-binding protein CQ11_09265 PF00356 Bacterial regulatory proteins, lacI family CQ11_09265 PF13377 Periplasmic binding protein-like domain CQ11_09275 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09280 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09285 PF01547 Bacterial extracellular solute-binding protein CQ11_09290 PF00892 EamA-like transporter family CQ11_09295 PF00703 Glycosyl hydrolases family 2 CQ11_09295 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_09295 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_09295 PF02929 Beta galactosidase small chain CQ11_09305 PF00356 Bacterial regulatory proteins, lacI family CQ11_09305 PF13377 Periplasmic binding protein-like domain CQ11_09315 PF02447 CQ11_09315 CQ11_09320 PF00392 Bacterial regulatory proteins, gntR family CQ11_09320 PF07729 FCD domain CQ11_09325 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CQ11_09325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQ11_09330 PF13635 CQ11_09330 CQ11_09335 PF00728 Glycosyl hydrolase family 20, catalytic domain CQ11_09335 PF00754 F5/8 type C domain CQ11_09335 PF02838 Glycosyl hydrolase family 20, domain 2 CQ11_09340 PF00703 Glycosyl hydrolases family 2 CQ11_09340 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_09340 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_09340 PF07532 CQ11_09340 CQ11_09340 PF16355 CQ11_09340 CQ11_09345 PF05025 RbsD / FucU transport protein family CQ11_09350 PF00294 pfkB family carbohydrate kinase CQ11_09355 PF13407 Periplasmic binding protein domain CQ11_09360 PF02653 CQ11_09360 CQ11_09365 PF00005 ABC transporter CQ11_09370 PF00356 Bacterial regulatory proteins, lacI family CQ11_09370 PF13377 Periplasmic binding protein-like domain CQ11_09375 PF13489 Methyltransferase domain CQ11_09380 PF00005 ABC transporter CQ11_09395 PF02872 5'-nucleotidase, C-terminal domain CQ11_09405 PF00356 Bacterial regulatory proteins, lacI family CQ11_09405 PF13377 Periplasmic binding protein-like domain CQ11_09410 PF00083 Sugar (and other) transporter CQ11_09415 PF02308 CQ11_09415 CQ11_09425 PF09370 TIM-barrel signal transduction protein CQ11_09430 PF06792 Uncharacterised protein family (UPF0261) CQ11_09435 PF00155 Aminotransferase class I and II CQ11_09435 PF00392 Bacterial regulatory proteins, gntR family CQ11_09445 PF03747 ADP-ribosylglycohydrolase CQ11_09450 PF02361 Cobalt transport protein CQ11_09455 PF00005 ABC transporter CQ11_09465 PF07155 ECF-type riboflavin transporter, S component CQ11_09475 PF12698 ABC-2 family transporter protein CQ11_09480 PF01061 CQ11_09480 CQ11_09485 PF00005 ABC transporter CQ11_09490 PF00440 Bacterial regulatory proteins, tetR family CQ11_09495 PF00881 Nitroreductase family CQ11_09505 PF04607 Region found in RelA / SpoT proteins CQ11_09510 PF13274 CQ11_09510 CQ11_09515 PF08348 CQ11_09515 CQ11_09515 PF13309 CQ11_09515 CQ11_09520 PF07693 CQ11_09520 CQ11_09535 PF12643 CQ11_09535 CQ11_09540 PF09848 Uncharacterized conserved protein (DUF2075) CQ11_09545 PF13173 AAA domain CQ11_09545 PF13635 CQ11_09545 CQ11_09555 PF00270 DEAD/DEAH box helicase CQ11_09555 PF00271 Helicase conserved C-terminal domain CQ11_09560 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CQ11_09565 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) CQ11_09570 PF09344 CT1975-like protein CQ11_09575 PF09704 CRISPR-associated protein (Cas_Cas5) CQ11_09580 PF08798 CRISPR associated protein CQ11_09585 PF01867 CRISPR associated protein Cas1 CQ11_09595 PF07751 CQ11_09595 CQ11_09600 PF01381 Helix-turn-helix CQ11_09605 PF00128 Alpha amylase, catalytic domain CQ11_09610 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09615 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09620 PF01547 Bacterial extracellular solute-binding protein CQ11_09625 PF00480 ROK family CQ11_09630 PF00391 PEP-utilising enzyme, mobile domain CQ11_09630 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CQ11_09630 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_09635 PF01565 FAD binding domain CQ11_09635 PF02913 FAD linked oxidases, C-terminal domain CQ11_09635 PF13183 4Fe-4S dicluster domain CQ11_09645 PF12146 Putative lysophospholipase CQ11_09650 PF00561 alpha/beta hydrolase fold CQ11_09655 PF00877 NlpC/P60 family CQ11_09660 PF00719 Inorganic pyrophosphatase CQ11_09665 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CQ11_09670 PF10103 Uncharacterised conserved protein (DUF2342) CQ11_09675 PF01171 PP-loop family CQ11_09675 PF09179 TilS substrate binding domain CQ11_09680 PF00156 Phosphoribosyl transferase domain CQ11_09685 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_09685 PF01434 Peptidase family M41 CQ11_09690 PF01227 GTP cyclohydrolase I CQ11_09695 PF00809 Pterin binding enzyme CQ11_09700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CQ11_09700 PF02152 Dihydroneopterin aldolase CQ11_09705 PF11377 CQ11_09705 CQ11_09710 PF03703 CQ11_09710 CQ11_09715 PF03703 CQ11_09715 CQ11_09720 PF00356 Bacterial regulatory proteins, lacI family CQ11_09720 PF13377 Periplasmic binding protein-like domain CQ11_09725 PF13416 Bacterial extracellular solute-binding protein CQ11_09730 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09735 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09740 PF00703 Glycosyl hydrolases family 2 CQ11_09740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_09740 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_09740 PF02929 Beta galactosidase small chain CQ11_09740 PF16353 CQ11_09740 CQ11_09745 PF07690 Major Facilitator Superfamily CQ11_09750 PF00381 PTS HPr component phosphorylation site CQ11_09750 PF00391 PEP-utilising enzyme, mobile domain CQ11_09750 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_09750 PF03610 PTS system fructose IIA component CQ11_09750 PF05524 PEP-utilising enzyme, N-terminal CQ11_09755 PF02734 DAK2 domain CQ11_09760 PF02733 Dak1 domain CQ11_09765 PF10727 Rossmann-like domain CQ11_09765 PF10728 Domain of unknown function (DUF2520) CQ11_09770 PF02569 Pantoate-beta-alanine ligase CQ11_09775 PF02261 Aspartate decarboxylase CQ11_09780 PF13242 HAD-hyrolase-like CQ11_09780 PF13344 Haloacid dehalogenase-like hydrolase CQ11_09785 PF00152 tRNA synthetases class II (D, K and N) CQ11_09785 PF01336 OB-fold nucleic acid binding domain CQ11_09790 PF03176 MMPL family CQ11_09795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_09795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_09800 PF00230 Major intrinsic protein CQ11_09810 PF08450 SMP-30/Gluconolaconase/LRE-like region CQ11_09815 PF02754 CQ11_09815 CQ11_09815 PF13183 4Fe-4S dicluster domain CQ11_09820 PF00890 FAD binding domain CQ11_09825 PF01266 FAD dependent oxidoreductase CQ11_09825 PF04324 BFD-like [2Fe-2S] binding domain CQ11_09830 PF04198 Putative sugar-binding domain CQ11_09830 PF13384 Homeodomain-like domain CQ11_09840 PF00633 Helix-hairpin-helix motif CQ11_09840 PF00730 HhH-GPD superfamily base excision DNA repair protein CQ11_09840 PF10576 Iron-sulfur binding domain of endonuclease III CQ11_09850 PF13481 AAA domain CQ11_09850 PF13541 Subunit ChlI of Mg-chelatase CQ11_09855 PF02080 TrkA-C domain CQ11_09855 PF02254 TrkA-N domain CQ11_09860 PF02386 Cation transport protein CQ11_09865 PF12728 Helix-turn-helix domain CQ11_09875 PF12802 MarR family CQ11_09880 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_09885 PF13396 CQ11_09885 CQ11_09890 PF01040 UbiA prenyltransferase family CQ11_09895 PF00501 AMP-binding enzyme CQ11_09900 PF03595 Voltage-dependent anion channel CQ11_09905 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09910 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_09915 PF13416 Bacterial extracellular solute-binding protein CQ11_09920 PF00378 Enoyl-CoA hydratase/isomerase family CQ11_09925 PF13378 Enolase C-terminal domain-like CQ11_09930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_09930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_09935 PF13180 PDZ domain CQ11_09935 PF13365 Trypsin-like peptidase domain CQ11_09940 PF00425 chorismate binding enzyme CQ11_09945 PF01209 ubiE/COQ5 methyltransferase family CQ11_09950 PF01494 FAD binding domain CQ11_09955 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CQ11_09960 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CQ11_09965 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CQ11_09970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CQ11_09975 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CQ11_09980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CQ11_09980 PF10531 SLBB domain CQ11_09980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQ11_09985 PF00384 Molybdopterin oxidoreductase CQ11_09985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQ11_09985 PF13510 2Fe-2S iron-sulfur cluster binding domain CQ11_09990 PF00146 NADH dehydrogenase CQ11_09995 PF12838 4Fe-4S dicluster domain CQ11_10000 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CQ11_10005 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQ11_10010 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CQ11_10010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQ11_10015 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CQ11_10020 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CQ11_10025 PF00348 Polyprenyl synthetase CQ11_10030 PF01043 SecA preprotein cross-linking domain CQ11_10030 PF07516 SecA Wing and Scaffold domain CQ11_10030 PF07517 SecA DEAD-like domain CQ11_10040 PF01476 LysM domain CQ11_10050 PF12728 Helix-turn-helix domain CQ11_10055 PF08666 SAF domain CQ11_10070 PF13476 AAA domain CQ11_10070 PF13558 Putative exonuclease SbcCD, C subunit CQ11_10075 PF00149 Calcineurin-like phosphoesterase CQ11_10075 PF12320 Type 5 capsule protein repressor C-terminal domain CQ11_10080 PF00459 Inositol monophosphatase family CQ11_10085 PF03193 Protein of unknown function, DUF258 CQ11_10090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQ11_10110 PF07859 alpha/beta hydrolase fold CQ11_10110 PF12146 Putative lysophospholipase CQ11_10115 PF00392 Bacterial regulatory proteins, gntR family CQ11_10115 PF07729 FCD domain CQ11_10120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_10125 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_10130 PF00005 ABC transporter CQ11_10130 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_10130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_10135 PF00005 ABC transporter CQ11_10140 PF00701 Dihydrodipicolinate synthetase family CQ11_10145 PF00480 ROK family CQ11_10150 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CQ11_10155 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CQ11_10160 PF01979 Amidohydrolase family CQ11_10165 PF04542 Sigma-70 region 2 CQ11_10165 PF08281 Sigma-70, region 4 CQ11_10175 PF00535 Glycosyl transferase family 2 CQ11_10180 PF00202 Aminotransferase class-III CQ11_10185 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_10190 PF00877 NlpC/P60 family CQ11_10195 PF13472 GDSL-like Lipase/Acylhydrolase family CQ11_10200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQ11_10200 PF00676 Dehydrogenase E1 component CQ11_10200 PF02779 Transketolase, pyrimidine binding domain CQ11_10200 PF16078 CQ11_10200 CQ11_10200 PF16870 CQ11_10200 CQ11_10205 PF00571 CBS domain CQ11_10205 PF01595 CQ11_10205 CQ11_10205 PF03471 Transporter associated domain CQ11_10210 PF00571 CBS domain CQ11_10210 PF01595 CQ11_10210 CQ11_10215 PF01551 Peptidase family M23 CQ11_10220 PF03009 Glycerophosphoryl diester phosphodiesterase family CQ11_10230 PF01471 Putative peptidoglycan binding domain CQ11_10235 PF00005 ABC transporter CQ11_10255 PF00750 tRNA synthetases class I (R) CQ11_10255 PF03485 Arginyl tRNA synthetase N terminal domain CQ11_10255 PF05746 DALR anticodon binding domain CQ11_10260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CQ11_10260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CQ11_10265 PF00742 Homoserine dehydrogenase CQ11_10265 PF01842 ACT domain CQ11_10265 PF03447 Homoserine dehydrogenase, NAD binding domain CQ11_10270 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_10275 PF00288 GHMP kinases N terminal domain CQ11_10280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_10280 PF07497 Rho termination factor, RNA-binding domain CQ11_10285 PF01197 Ribosomal protein L31 CQ11_10290 PF00472 RF-1 domain CQ11_10290 PF03462 PCRF domain CQ11_10295 PF05175 Methyltransferase small domain CQ11_10300 PF01300 Telomere recombination CQ11_10305 PF00953 Glycosyl transferase family 4 CQ11_10315 PF00119 ATP synthase A chain CQ11_10320 PF00137 ATP synthase subunit C CQ11_10325 PF00430 ATP synthase B/B' CF(0) CQ11_10330 PF00213 ATP synthase delta (OSCP) subunit CQ11_10335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_10335 PF00306 ATP synthase alpha/beta chain, C terminal domain CQ11_10335 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQ11_10340 PF00231 ATP synthase CQ11_10345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_10345 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQ11_10350 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CQ11_10355 PF10739 CQ11_10355 CQ11_10360 PF01939 Protein of unknown function DUF91 CQ11_10370 PF12697 Alpha/beta hydrolase family CQ11_10380 PF05103 DivIVA protein CQ11_10395 PF00085 Thioredoxin CQ11_10395 PF14561 Tetratricopeptide repeat CQ11_10400 PF00128 Alpha amylase, catalytic domain CQ11_10405 PF00356 Bacterial regulatory proteins, lacI family CQ11_10405 PF13377 Periplasmic binding protein-like domain CQ11_10410 PF13416 Bacterial extracellular solute-binding protein CQ11_10415 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_10415 PF16296 CQ11_10415 CQ11_10420 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_10425 PF14067 CQ11_10425 CQ11_10430 PF00128 Alpha amylase, catalytic domain CQ11_10430 PF02806 Alpha amylase, C-terminal all-beta domain CQ11_10430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_10435 PF01636 Phosphotransferase enzyme family CQ11_10440 PF00128 Alpha amylase, catalytic domain CQ11_10440 PF16657 CQ11_10440 CQ11_10445 PF00128 Alpha amylase, catalytic domain CQ11_10445 PF11896 Domain of unknown function (DUF3416) CQ11_10455 PF00005 ABC transporter CQ11_10470 PF07885 Ion channel CQ11_10475 PF00343 Carbohydrate phosphorylase CQ11_10480 PF00579 tRNA synthetases class I (W and Y) CQ11_10485 PF00128 Alpha amylase, catalytic domain CQ11_10485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_10490 PF00293 NUDIX domain CQ11_10490 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CQ11_10490 PF09297 NADH pyrophosphatase zinc ribbon domain CQ11_10495 PF00570 HRDC domain CQ11_10495 PF13245 Part of AAA domain CQ11_10495 PF13361 UvrD-like helicase C-terminal domain CQ11_10500 PF00899 ThiF family CQ11_10505 PF10103 Uncharacterised conserved protein (DUF2342) CQ11_10510 PF05362 Lon protease (S16) C-terminal proteolytic domain CQ11_10510 PF13180 PDZ domain CQ11_10520 PF03699 CQ11_10520 CQ11_10530 PF00754 F5/8 type C domain CQ11_10535 PF00728 Glycosyl hydrolase family 20, catalytic domain CQ11_10535 PF00754 F5/8 type C domain CQ11_10535 PF02838 Glycosyl hydrolase family 20, domain 2 CQ11_10535 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CQ11_10550 PF00392 Bacterial regulatory proteins, gntR family CQ11_10555 PF00005 ABC transporter CQ11_10565 PF01699 Sodium/calcium exchanger protein CQ11_10575 PF00890 FAD binding domain CQ11_10575 PF02910 Fumarate reductase flavoprotein C-term CQ11_10580 PF12838 4Fe-4S dicluster domain CQ11_10580 PF13085 2Fe-2S iron-sulfur cluster binding domain CQ11_10585 PF00296 Luciferase-like monooxygenase CQ11_10590 PF03358 NADPH-dependent FMN reductase CQ11_10595 PF00186 Dihydrofolate reductase CQ11_10600 PF00303 Thymidylate synthase CQ11_10605 PF10698 CQ11_10605 CQ11_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_10610 PF07568 CQ11_10610 CQ11_10610 PF08448 PAS fold CQ11_10610 PF12282 Signal transduction histidine kinase CQ11_10615 PF02467 CQ11_10615 CQ11_10625 PF00005 ABC transporter CQ11_10630 PF00072 Response regulator receiver domain CQ11_10630 PF00196 Bacterial regulatory proteins, luxR family CQ11_10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_10635 PF07730 Histidine kinase CQ11_10640 PF02586 Uncharacterised ACR, COG2135 CQ11_10645 PF00533 BRCA1 C Terminus (BRCT) domain CQ11_10645 PF01653 NAD-dependent DNA ligase adenylation domain CQ11_10645 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CQ11_10645 PF03120 NAD-dependent DNA ligase OB-fold domain CQ11_10645 PF12826 Helix-hairpin-helix motif CQ11_10650 PF00392 Bacterial regulatory proteins, gntR family CQ11_10650 PF07702 UTRA domain CQ11_10655 PF03747 ADP-ribosylglycohydrolase CQ11_10660 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CQ11_10665 PF00294 pfkB family carbohydrate kinase CQ11_10670 PF13784 Fic/DOC family N-terminal CQ11_10675 PF00082 Subtilase family CQ11_10680 PF13091 PLD-like domain CQ11_10685 PF02686 Glu-tRNAGln amidotransferase C subunit CQ11_10690 PF01425 Amidase CQ11_10695 PF02637 GatB domain CQ11_10695 PF02934 GatB/GatE catalytic domain CQ11_10700 PF00390 Malic enzyme, N-terminal domain CQ11_10700 PF03949 Malic enzyme, NAD binding domain CQ11_10700 PF13291 ACT domain