CQ11_00035 SM00363 S4 RNA-binding domain CQ11_00095 SM00382 ATPases associated with a variety of cellular activities CQ11_00115 SM00450 Rhodanese Homology Domain CQ11_00120 SM00382 ATPases associated with a variety of cellular activities CQ11_00125 SM00855 Phosphoglycerate mutase family CQ11_00145 SM00382 ATPases associated with a variety of cellular activities CQ11_00160 SM00382 ATPases associated with a variety of cellular activities CQ11_00170 SM00244 prohibitin homologues CQ11_00180 SM00530 Helix-turn-helix XRE-family like proteins CQ11_00210 SM00481 DNA polymerase alpha chain like domain CQ11_00275 SM00382 ATPases associated with a variety of cellular activities CQ11_00335 SM00448 cheY-homologous receiver domain CQ11_00335 SM01012 CQ11_00335 CQ11_00345 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CQ11_00345 SM00474 3'-5' exonuclease CQ11_00345 SM00475 5'-3' exonuclease CQ11_00345 SM00482 DNA polymerase A domain CQ11_00350 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_00365 SM00382 ATPases associated with a variety of cellular activities CQ11_00380 SM00487 DEAD-like helicases superfamily CQ11_00380 SM00490 helicase superfamily c-terminal domain CQ11_00405 SM00465 GIY-YIG type nucleases (URI domain) CQ11_00425 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQ11_00460 SM00861 Transketolase, pyrimidine binding domain CQ11_00485 SM00363 S4 RNA-binding domain CQ11_00495 SM00382 ATPases associated with a variety of cellular activities CQ11_00515 SM00240 Forkhead associated domain CQ11_00520 SM00422 helix_turn_helix, mercury resistance CQ11_00525 SM00422 helix_turn_helix, mercury resistance CQ11_00550 SM00487 DEAD-like helicases superfamily CQ11_00550 SM00490 helicase superfamily c-terminal domain CQ11_00550 SM01142 CQ11_00550 CQ11_00590 SM00062 Bacterial periplasmic substrate-binding proteins CQ11_00630 SM01409 CQ11_00630 CQ11_00635 SM00072 Guanylate kinase homologues. CQ11_00650 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CQ11_00660 SM00841 Elongation factor P, C-terminal CQ11_00660 SM01185 CQ11_00660 CQ11_00700 SM00732 Likely ribonuclease with RNase H fold. CQ11_00705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_00715 SM00363 S4 RNA-binding domain CQ11_00715 SM01390 CQ11_00715 CQ11_00720 SM00382 ATPases associated with a variety of cellular activities CQ11_00750 SM00487 DEAD-like helicases superfamily CQ11_00750 SM00490 helicase superfamily c-terminal domain CQ11_00775 SM00849 Metallo-beta-lactamase superfamily CQ11_00790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_00790 SM00954 Region found in RelA / SpoT proteins CQ11_00810 SM01323 CQ11_00810 CQ11_00815 SM00382 ATPases associated with a variety of cellular activities CQ11_00820 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQ11_00860 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_00870 SM00421 helix_turn_helix, Lux Regulon CQ11_00870 SM00448 cheY-homologous receiver domain CQ11_00910 SM00642 Alpha-amylase domain CQ11_00915 SM00642 Alpha-amylase domain CQ11_00920 SM00642 Alpha-amylase domain CQ11_00930 SM00341 Helicase and RNase D C-terminal CQ11_00930 SM00474 3'-5' exonuclease CQ11_00935 SM00861 Transketolase, pyrimidine binding domain CQ11_00940 SM00191 Integrin alpha (beta-propellor repeats). CQ11_01005 SM00434 DNA Topoisomerase IV CQ11_01020 SM00387 Histidine kinase-like ATPases CQ11_01020 SM00433 TopoisomeraseII CQ11_01030 SM00479 CQ11_01030 CQ11_01060 SM00257 Lysin motif CQ11_01065 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_01065 SM00740 CQ11_01065 CQ11_01085 SM00465 GIY-YIG type nucleases (URI domain) CQ11_01085 SM00479 CQ11_01085 CQ11_01165 SM01230 CQ11_01165 CQ11_01170 SM00855 Phosphoglycerate mutase family CQ11_01180 SM01230 CQ11_01180 CQ11_01255 SM00382 ATPases associated with a variety of cellular activities CQ11_01260 SM00382 ATPases associated with a variety of cellular activities CQ11_01320 SM00644 CQ11_01320 CQ11_01320 SM01095 Cpl-7 lysozyme C-terminal domain CQ11_01505 SM00400 zinc finger CQ11_01505 SM00493 CQ11_01505 CQ11_01510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_01540 SM00382 ATPases associated with a variety of cellular activities CQ11_01565 SM00481 DNA polymerase alpha chain like domain CQ11_01575 SM00363 S4 RNA-binding domain CQ11_01605 SM00864 Tubulin/FtsZ family, GTPase domain CQ11_01605 SM00865 Tubulin/FtsZ family, C-terminal domain CQ11_01710 SM00257 Lysin motif CQ11_01720 SM00491 CQ11_01720 CQ11_01740 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_01750 SM00382 ATPases associated with a variety of cellular activities CQ11_01760 SM00530 Helix-turn-helix XRE-family like proteins CQ11_01775 SM00854 Bacterial capsule synthesis protein PGA_cap CQ11_01780 SM00843 CQ11_01780 CQ11_01785 SM00849 Metallo-beta-lactamase superfamily CQ11_01790 SM01130 CQ11_01790 CQ11_01800 SM00487 DEAD-like helicases superfamily CQ11_01800 SM00490 helicase superfamily c-terminal domain CQ11_01820 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_01820 SM00322 K homology RNA-binding domain CQ11_01825 SM01387 CQ11_01825 CQ11_01835 SM00382 ATPases associated with a variety of cellular activities CQ11_01845 SM00904 Riboflavin kinase CQ11_01865 SM00382 ATPases associated with a variety of cellular activities CQ11_01880 SM00448 cheY-homologous receiver domain CQ11_01880 SM00862 Transcriptional regulatory protein, C terminal CQ11_01885 SM00387 Histidine kinase-like ATPases CQ11_01885 SM00388 His Kinase A (phosphoacceptor) domain CQ11_01910 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_01975 SM00363 S4 RNA-binding domain CQ11_02000 SM00893 Electron transfer flavoprotein domain CQ11_02035 SM00382 ATPases associated with a variety of cellular activities CQ11_02110 SM00382 ATPases associated with a variety of cellular activities CQ11_02110 SM00962 SRP54-type protein, GTPase domain CQ11_02110 SM00963 SRP54-type protein, helical bundle domain CQ11_02115 SM00382 ATPases associated with a variety of cellular activities CQ11_02115 SM00962 SRP54-type protein, GTPase domain CQ11_02115 SM00963 SRP54-type protein, helical bundle domain CQ11_02130 SM00968 SMC proteins Flexible Hinge Domain CQ11_02135 SM00562 CQ11_02135 CQ11_02180 SM00830 Chorismate mutase type II CQ11_02185 SM00382 ATPases associated with a variety of cellular activities CQ11_02185 SM00994 ClpX C4-type zinc finger CQ11_02185 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_02230 SM00354 helix_turn _helix lactose operon repressor CQ11_02330 SM00382 ATPases associated with a variety of cellular activities CQ11_02355 SM00479 CQ11_02355 CQ11_02440 SM00487 DEAD-like helicases superfamily CQ11_02440 SM00490 helicase superfamily c-terminal domain CQ11_02550 SM00382 ATPases associated with a variety of cellular activities CQ11_02565 SM00382 ATPases associated with a variety of cellular activities CQ11_02575 SM00530 Helix-turn-helix XRE-family like proteins CQ11_02615 SM00873 B3/4 domain CQ11_02615 SM00874 tRNA synthetase B5 domain CQ11_02615 SM00896 Ferredoxin-fold anticodon binding domain CQ11_02630 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQ11_02700 SM00917 LeuA allosteric (dimerisation) domain CQ11_02705 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_02715 SM00331 Sigma factor PP2C-like phosphatases CQ11_02715 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQ11_02730 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_02730 SM01091 Transporter associated domain CQ11_02750 SM00271 DnaJ molecular chaperone homology domain CQ11_02770 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_02780 SM00838 Elongation factor G C-terminus CQ11_02815 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CQ11_02815 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CQ11_02825 SM00849 Metallo-beta-lactamase superfamily CQ11_02830 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQ11_02860 SM00756 CQ11_02860 CQ11_02880 SM00529 Helix-turn-helix diphteria tox regulatory element CQ11_02880 SM00899 CQ11_02880 CQ11_02895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQ11_02915 SM00382 ATPases associated with a variety of cellular activities CQ11_02940 SM00014 Acid phosphatase homologues CQ11_02950 SM00530 Helix-turn-helix XRE-family like proteins CQ11_02970 SM00382 ATPases associated with a variety of cellular activities CQ11_03000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_03035 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_03055 SM00421 helix_turn_helix, Lux Regulon CQ11_03090 SM00354 helix_turn _helix lactose operon repressor CQ11_03105 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_03140 SM00857 Resolvase, N terminal domain CQ11_03160 SM00644 CQ11_03160 CQ11_03160 SM01095 Cpl-7 lysozyme C-terminal domain CQ11_03290 SM00470 ParB-like nuclease domain CQ11_03320 SM00507 HNH nucleases CQ11_03330 SM00487 DEAD-like helicases superfamily CQ11_03335 SM00990 CQ11_03335 CQ11_03340 SM00885 D5 N terminal like CQ11_03340 SM00942 Primase C terminal 1 (PriCT-1) CQ11_03350 SM01040 BRO family, N-terminal domain CQ11_03375 SM00482 DNA polymerase A domain CQ11_03435 SM00487 DEAD-like helicases superfamily CQ11_03435 SM00490 helicase superfamily c-terminal domain CQ11_03460 SM00855 Phosphoglycerate mutase family CQ11_03510 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_03525 SM00382 ATPases associated with a variety of cellular activities CQ11_03530 SM00382 ATPases associated with a variety of cellular activities CQ11_03535 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQ11_03540 SM00382 ATPases associated with a variety of cellular activities CQ11_03545 SM00382 ATPases associated with a variety of cellular activities CQ11_03560 SM00421 helix_turn_helix, Lux Regulon CQ11_03560 SM00448 cheY-homologous receiver domain CQ11_03565 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CQ11_03565 SM01232 CQ11_03565 CQ11_03570 SM00358 Double-stranded RNA binding motif CQ11_03570 SM00535 Ribonuclease III family CQ11_03595 SM00487 DEAD-like helicases superfamily CQ11_03595 SM00490 helicase superfamily c-terminal domain CQ11_03640 SM00346 helix_turn_helix isocitrate lyase regulation CQ11_03700 SM00354 helix_turn _helix lactose operon repressor CQ11_03790 SM00487 DEAD-like helicases superfamily CQ11_03800 SM00411 bacterial (prokaryotic) histone like domain CQ11_03860 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_03865 SM00382 ATPases associated with a variety of cellular activities CQ11_03910 SM00382 ATPases associated with a variety of cellular activities CQ11_03915 SM00937 CQ11_03915 CQ11_03975 SM00487 DEAD-like helicases superfamily CQ11_03975 SM00490 helicase superfamily c-terminal domain CQ11_03985 SM00481 DNA polymerase alpha chain like domain CQ11_03990 SM01011 Aminopeptidase P, N-terminal domain CQ11_03995 SM00924 MgtE intracellular N domain CQ11_04045 SM01133 CQ11_04045 CQ11_04055 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CQ11_04075 SM00382 ATPases associated with a variety of cellular activities CQ11_04125 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CQ11_04135 SM00878 Biotin carboxylase C-terminal domain CQ11_04170 SM00893 Electron transfer flavoprotein domain CQ11_04180 SM00849 Metallo-beta-lactamase superfamily CQ11_04235 SM00020 Trypsin-like serine protease CQ11_04260 SM00798 AICARFT/IMPCHase bienzyme CQ11_04260 SM00851 MGS-like domain CQ11_04275 SM00881 CoA binding domain CQ11_04315 SM00889 Elongation factor G, domain IV CQ11_04325 SM00382 ATPases associated with a variety of cellular activities CQ11_04345 SM00530 Helix-turn-helix XRE-family like proteins CQ11_04380 SM00382 ATPases associated with a variety of cellular activities CQ11_04395 SM01240 CQ11_04395 CQ11_04400 SM00479 CQ11_04400 CQ11_04405 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_04405 SM01240 CQ11_04405 CQ11_04420 SM01211 CQ11_04420 CQ11_04425 SM01209 CQ11_04425 CQ11_04425 SM01210 CQ11_04425 CQ11_04450 SM01001 AIR carboxylase CQ11_04460 SM00883 Chaperonin 10 Kd subunit CQ11_04525 SM01005 Alanine racemase, C-terminal domain CQ11_04570 SM00382 ATPases associated with a variety of cellular activities CQ11_04605 SM00062 Bacterial periplasmic substrate-binding proteins CQ11_04615 SM00382 ATPases associated with a variety of cellular activities CQ11_04620 SM00422 helix_turn_helix, mercury resistance CQ11_04635 SM00662 RNA polymerases D CQ11_04655 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_04715 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQ11_04720 SM01374 CQ11_04720 CQ11_04740 SM00322 K homology RNA-binding domain CQ11_04755 SM01382 CQ11_04755 CQ11_04755 SM01383 CQ11_04755 CQ11_04775 SM01403 CQ11_04775 CQ11_04795 SM00838 Elongation factor G C-terminus CQ11_04795 SM00889 Elongation factor G, domain IV CQ11_04815 SM00663 RNA polymerase I subunit A N-terminus CQ11_04850 SM00649 Ribosomal protein L11/L12 CQ11_04855 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CQ11_04945 SM00909 Sporulation and spore germination CQ11_04950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQ11_04950 SM00387 Histidine kinase-like ATPases CQ11_04950 SM00388 His Kinase A (phosphoacceptor) domain CQ11_04955 SM00448 cheY-homologous receiver domain CQ11_04955 SM00862 Transcriptional regulatory protein, C terminal CQ11_05070 SM00382 ATPases associated with a variety of cellular activities CQ11_05080 SM00984 UDP binding domain CQ11_05185 SM00387 Histidine kinase-like ATPases CQ11_05185 SM00388 His Kinase A (phosphoacceptor) domain CQ11_05190 SM00448 cheY-homologous receiver domain CQ11_05190 SM00862 Transcriptional regulatory protein, C terminal CQ11_05210 SM00710 Parallel beta-helix repeats CQ11_05240 SM00838 Elongation factor G C-terminus CQ11_05250 SM00382 ATPases associated with a variety of cellular activities CQ11_05265 SM00382 ATPases associated with a variety of cellular activities CQ11_05285 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_05325 SM00642 Alpha-amylase domain CQ11_05380 SM00382 ATPases associated with a variety of cellular activities CQ11_05410 SM00382 ATPases associated with a variety of cellular activities CQ11_05415 SM00382 ATPases associated with a variety of cellular activities CQ11_05470 SM00954 Region found in RelA / SpoT proteins CQ11_05530 SM00354 helix_turn _helix lactose operon repressor CQ11_05535 SM00642 Alpha-amylase domain CQ11_05555 SM00642 Alpha-amylase domain CQ11_05575 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQ11_05575 SM00421 helix_turn_helix, Lux Regulon CQ11_05590 SM00530 Helix-turn-helix XRE-family like proteins CQ11_05595 SM00901 CQ11_05595 CQ11_05695 SM00382 ATPases associated with a variety of cellular activities CQ11_05700 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_05715 SM00382 ATPases associated with a variety of cellular activities CQ11_05750 SM01192 CQ11_05750 CQ11_05750 SM01193 CQ11_05750 CQ11_05760 SM00487 DEAD-like helicases superfamily CQ11_05760 SM00490 helicase superfamily c-terminal domain CQ11_05760 SM00982 CQ11_05760 CQ11_05760 SM01058 CarD-like/TRCF domain CQ11_05775 SM01400 CQ11_05775 CQ11_05805 SM00382 ATPases associated with a variety of cellular activities CQ11_05815 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_05820 SM00382 ATPases associated with a variety of cellular activities CQ11_05830 SM00650 Ribosomal RNA adenine dimethylases CQ11_05885 SM00382 ATPases associated with a variety of cellular activities CQ11_05945 SM00382 ATPases associated with a variety of cellular activities CQ11_06075 SM01061 CAT RNA binding domain CQ11_06145 SM00833 Cobalamin synthesis protein cobW C-terminal domain CQ11_06165 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_06165 SM00866 CQ11_06165 CQ11_06170 SM00382 ATPases associated with a variety of cellular activities CQ11_06245 SM00852 Probable molybdopterin binding domain CQ11_06255 SM00858 CQ11_06255 CQ11_06290 SM00529 Helix-turn-helix diphteria tox regulatory element CQ11_06290 SM00899 CQ11_06290 CQ11_06315 SM00357 Cold shock protein domain CQ11_06335 SM00448 cheY-homologous receiver domain CQ11_06335 SM00862 Transcriptional regulatory protein, C terminal CQ11_06340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQ11_06340 SM00387 Histidine kinase-like ATPases CQ11_06340 SM00388 His Kinase A (phosphoacceptor) domain CQ11_06345 SM00563 Phosphate acyltransferases CQ11_06375 SM00986 Uracil DNA glycosylase superfamily CQ11_06375 SM00987 UreE urease accessory protein, C-terminal domain CQ11_06405 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_06410 SM00382 ATPases associated with a variety of cellular activities CQ11_06460 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQ11_06470 SM00493 CQ11_06470 CQ11_06475 SM00382 ATPases associated with a variety of cellular activities CQ11_06510 SM01022 CQ11_06510 CQ11_06520 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQ11_06525 SM00840 CQ11_06525 CQ11_06545 SM01120 CQ11_06545 CQ11_06555 SM00855 Phosphoglycerate mutase family CQ11_06560 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_06610 SM00448 cheY-homologous receiver domain CQ11_06610 SM00862 Transcriptional regulatory protein, C terminal CQ11_06615 SM00387 Histidine kinase-like ATPases CQ11_06615 SM00388 His Kinase A (phosphoacceptor) domain CQ11_06625 SM00855 Phosphoglycerate mutase family CQ11_06670 SM00382 ATPases associated with a variety of cellular activities CQ11_06735 SM00327 von Willebrand factor (vWF) type A domain CQ11_06740 SM00327 von Willebrand factor (vWF) type A domain CQ11_06820 SM00382 ATPases associated with a variety of cellular activities CQ11_06825 SM00382 ATPases associated with a variety of cellular activities CQ11_06830 SM00382 ATPases associated with a variety of cellular activities CQ11_06845 SM00829 Enoylreductase CQ11_06875 SM00382 ATPases associated with a variety of cellular activities CQ11_06900 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_06900 SM00866 CQ11_06900 CQ11_06930 SM00382 ATPases associated with a variety of cellular activities CQ11_06950 SM01350 CQ11_06950 CQ11_07025 SM00812 Alpha-L-fucosidase CQ11_07050 SM00382 ATPases associated with a variety of cellular activities CQ11_07155 SM00382 ATPases associated with a variety of cellular activities CQ11_07160 SM00382 ATPases associated with a variety of cellular activities CQ11_07165 SM00382 ATPases associated with a variety of cellular activities CQ11_07215 SM00382 ATPases associated with a variety of cellular activities CQ11_07250 SM01133 CQ11_07250 CQ11_07275 SM00506 Appr-1"-p processing enzyme CQ11_07315 SM00487 DEAD-like helicases superfamily CQ11_07315 SM00490 helicase superfamily c-terminal domain CQ11_07315 SM00847 Helicase associated domain (HA2) Add an annotation CQ11_07370 SM00448 cheY-homologous receiver domain CQ11_07370 SM00862 Transcriptional regulatory protein, C terminal CQ11_07420 SM00563 Phosphate acyltransferases CQ11_07440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_07465 SM00382 ATPases associated with a variety of cellular activities CQ11_07520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_07555 SM00470 ParB-like nuclease domain CQ11_07570 SM00393 Putative single-stranded nucleic acids-binding domain CQ11_07595 SM00382 ATPases associated with a variety of cellular activities CQ11_07595 SM00760 Bacterial dnaA protein helix-turn-helix domain CQ11_07600 SM00480 DNA polymerase III beta subunit CQ11_07615 SM00387 Histidine kinase-like ATPases CQ11_07615 SM00433 TopoisomeraseII CQ11_07620 SM00434 DNA Topoisomerase IV CQ11_07685 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_07685 SM00740 CQ11_07685 CQ11_07700 SM00331 Sigma factor PP2C-like phosphatases CQ11_07700 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQ11_07705 SM00240 Forkhead associated domain CQ11_07710 SM00240 Forkhead associated domain CQ11_07740 SM00506 Appr-1"-p processing enzyme CQ11_07790 SM00226 Low molecular weight phosphatase family CQ11_07825 SM00731 SprT homologues. CQ11_07845 SM00382 ATPases associated with a variety of cellular activities CQ11_07845 SM00487 DEAD-like helicases superfamily CQ11_07845 SM00490 helicase superfamily c-terminal domain CQ11_07845 SM00847 Helicase associated domain (HA2) Add an annotation CQ11_07850 SM00421 helix_turn_helix, Lux Regulon CQ11_07850 SM00448 cheY-homologous receiver domain CQ11_07865 SM00382 ATPases associated with a variety of cellular activities CQ11_07875 SM00382 ATPases associated with a variety of cellular activities CQ11_07885 SM00421 helix_turn_helix, Lux Regulon CQ11_07885 SM00448 cheY-homologous receiver domain CQ11_07915 SM00382 ATPases associated with a variety of cellular activities CQ11_07920 SM00346 helix_turn_helix isocitrate lyase regulation CQ11_07945 SM00382 ATPases associated with a variety of cellular activities CQ11_07960 SM00382 ATPases associated with a variety of cellular activities CQ11_07965 SM00382 ATPases associated with a variety of cellular activities CQ11_07970 SM00354 helix_turn _helix lactose operon repressor CQ11_08070 SM00382 ATPases associated with a variety of cellular activities CQ11_08140 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQ11_08265 SM00382 ATPases associated with a variety of cellular activities CQ11_08275 SM00852 Probable molybdopterin binding domain CQ11_08280 SM00852 Probable molybdopterin binding domain CQ11_08295 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_08305 SM00642 Alpha-amylase domain CQ11_08320 SM00740 CQ11_08320 CQ11_08345 SM00100 Cyclic nucleotide-monophosphate binding domain CQ11_08345 SM00419 helix_turn_helix, cAMP Regulatory protein CQ11_08400 SM00487 DEAD-like helicases superfamily CQ11_08400 SM00490 helicase superfamily c-terminal domain CQ11_08420 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQ11_08420 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQ11_08420 SM00493 CQ11_08420 CQ11_08575 SM00966 SpoVT / AbrB like domain CQ11_08590 SM00478 endonuclease III CQ11_08635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQ11_08645 SM00450 Rhodanese Homology Domain CQ11_08670 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CQ11_08695 SM00271 DnaJ molecular chaperone homology domain CQ11_08700 SM00422 helix_turn_helix, mercury resistance CQ11_08710 SM00191 Integrin alpha (beta-propellor repeats). CQ11_08710 SM00364 Leucine-rich repeats, bacterial type CQ11_08710 SM00365 Leucine-rich repeat, SDS22-like subfamily CQ11_08750 SM00382 ATPases associated with a variety of cellular activities CQ11_08750 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_08805 SM00788 Adenylosuccinate synthetase CQ11_08820 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQ11_08855 SM00421 helix_turn_helix, Lux Regulon CQ11_08865 SM00327 von Willebrand factor (vWF) type A domain CQ11_08945 SM00855 Phosphoglycerate mutase family CQ11_08965 SM00382 ATPases associated with a variety of cellular activities CQ11_09020 SM00382 ATPases associated with a variety of cellular activities CQ11_09020 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_09070 SM00420 helix_turn_helix, Deoxyribose operon repressor CQ11_09070 SM01134 CQ11_09070 CQ11_09085 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_09095 SM01120 CQ11_09095 CQ11_09100 SM00829 Enoylreductase CQ11_09165 SM00420 helix_turn_helix, Deoxyribose operon repressor CQ11_09165 SM01134 CQ11_09165 CQ11_09265 SM00354 helix_turn _helix lactose operon repressor CQ11_09295 SM01038 Beta galactosidase small chain CQ11_09305 SM00354 helix_turn _helix lactose operon repressor CQ11_09320 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_09320 SM00895 CQ11_09320 CQ11_09325 SM01350 CQ11_09325 CQ11_09340 SM00634 Bacterial Ig-like domain (group 1) CQ11_09365 SM00382 ATPases associated with a variety of cellular activities CQ11_09370 SM00354 helix_turn _helix lactose operon repressor CQ11_09380 SM00382 ATPases associated with a variety of cellular activities CQ11_09405 SM00354 helix_turn _helix lactose operon repressor CQ11_09435 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_09455 SM00382 ATPases associated with a variety of cellular activities CQ11_09485 SM00382 ATPases associated with a variety of cellular activities CQ11_09505 SM00954 Region found in RelA / SpoT proteins CQ11_09555 SM00487 DEAD-like helicases superfamily CQ11_09555 SM00490 helicase superfamily c-terminal domain CQ11_09580 SM01101 CQ11_09580 CQ11_09600 SM00530 Helix-turn-helix XRE-family like proteins CQ11_09605 SM00642 Alpha-amylase domain CQ11_09685 SM00382 ATPases associated with a variety of cellular activities CQ11_09700 SM00905 Dihydroneopterin aldolase CQ11_09720 SM00354 helix_turn _helix lactose operon repressor CQ11_09740 SM01038 Beta galactosidase small chain CQ11_09755 SM01120 CQ11_09755 CQ11_09840 SM00478 endonuclease III CQ11_09840 SM00525 CQ11_09840 CQ11_09850 SM00382 ATPases associated with a variety of cellular activities CQ11_09875 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_09880 SM00855 Phosphoglycerate mutase family CQ11_09925 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQ11_09935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQ11_09980 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQ11_09985 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQ11_10030 SM00957 SecA DEAD-like domain CQ11_10030 SM00958 SecA preprotein cross-linking domain CQ11_10055 SM00858 CQ11_10055 CQ11_10115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_10115 SM00895 CQ11_10115 CQ11_10130 SM00382 ATPases associated with a variety of cellular activities CQ11_10135 SM00382 ATPases associated with a variety of cellular activities CQ11_10140 SM01130 CQ11_10140 CQ11_10200 SM00861 Transketolase, pyrimidine binding domain CQ11_10205 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_10205 SM01091 Transporter associated domain CQ11_10210 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_10235 SM00382 ATPases associated with a variety of cellular activities CQ11_10255 SM00836 DALR anticodon binding domain CQ11_10255 SM01016 Arginyl tRNA synthetase N terminal dom CQ11_10280 SM00382 ATPases associated with a variety of cellular activities CQ11_10290 SM00937 CQ11_10290 CQ11_10345 SM00382 ATPases associated with a variety of cellular activities CQ11_10400 SM00642 Alpha-amylase domain CQ11_10405 SM00354 helix_turn _helix lactose operon repressor CQ11_10430 SM00642 Alpha-amylase domain CQ11_10440 SM00642 Alpha-amylase domain CQ11_10445 SM00642 Alpha-amylase domain CQ11_10455 SM00382 ATPases associated with a variety of cellular activities CQ11_10485 SM00642 Alpha-amylase domain CQ11_10495 SM00341 Helicase and RNase D C-terminal CQ11_10550 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_10555 SM00382 ATPases associated with a variety of cellular activities CQ11_10610 SM00387 Histidine kinase-like ATPases CQ11_10630 SM00421 helix_turn_helix, Lux Regulon CQ11_10630 SM00448 cheY-homologous receiver domain CQ11_10635 SM00387 Histidine kinase-like ATPases CQ11_10645 SM00292 breast cancer carboxy-terminal domain CQ11_10645 SM00532 Ligase N family CQ11_10650 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_10650 SM00866 CQ11_10650 CQ11_10680 SM00155 Phospholipase D. Active site motifs. CQ11_10695 SM00845 GatB domain CQ11_10700 SM00919 Malic enzyme, NAD binding domain CQ11_10700 SM01274 CQ11_10700