locus-tag class description J4179_00005 PF00308 Bacterial dnaA protein J4179_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4179_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4179_00010 PF02767 DNA polymerase III beta subunit, central domain J4179_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4179_00015 PF02463 RecF/RecN/SMC N terminal domain J4179_00020 PF05258 Dna[CI] antecedent, DciA J4179_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_00025 PF01751 Toprim domain J4179_00025 PF00204 DNA gyrase B J4179_00025 PF00986 DNA gyrase B subunit, carboxyl terminus J4179_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller J4179_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A J4179_00035 PF12089 Transmembrane domain of unknown function (DUF3566) J4179_00070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4179_00080 PF06781 Cell division protein CrgA J4179_00085 PF04203 Sortase domain J4179_00095 PF03793 PASTA domain J4179_00095 PF00069 Protein kinase domain J4179_00100 PF00905 Penicillin binding protein transpeptidase domain J4179_00105 PF01098 Cell cycle protein J4179_00115 PF16697 Inner membrane component of T3SS, cytoplasmic domain J4179_00120 PF01061 ABC-2 type transporter J4179_00120 PF00005 ABC transporter J4179_00120 PF00498 FHA domain J4179_00135 PF01661 Macro domain J4179_00140 PF00075 RNase H J4179_00150 PF00326 Prolyl oligopeptidase family J4179_00150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4179_00155 PF01048 Phosphorylase superfamily J4179_00160 PF02664 S-Ribosylhomocysteinase (LuxS) J4179_00165 PF01475 Ferric uptake regulator family J4179_00175 PF07972 NrdI Flavodoxin like J4179_00180 PF02867 Ribonucleotide reductase, barrel domain J4179_00180 PF00317 Ribonucleotide reductase, all-alpha domain J4179_00180 PF08343 Ribonucleotide reductase N-terminal J4179_00185 PF00762 Ferrochelatase J4179_00190 PF06778 Chlorite dismutase J4179_00195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4179_00195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4179_00205 PF00268 Ribonucleotide reductase, small chain J4179_00220 PF01850 PIN domain J4179_00225 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4179_00235 PF13416 Bacterial extracellular solute-binding protein J4179_00240 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00245 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00265 PF00270 DEAD/DEAH box helicase J4179_00265 PF11898 Domain of unknown function (DUF3418) J4179_00265 PF04408 Helicase associated domain (HA2) J4179_00265 PF00271 Helicase conserved C-terminal domain J4179_00265 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4179_00270 PF00072 Response regulator receiver domain J4179_00270 PF00196 Bacterial regulatory proteins, luxR family J4179_00280 PF00005 ABC transporter J4179_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_00285 PF07730 Histidine kinase J4179_00285 PF05231 MASE1 J4179_00290 PF00196 Bacterial regulatory proteins, luxR family J4179_00290 PF00072 Response regulator receiver domain J4179_00300 PF01263 Aldose 1-epimerase J4179_00305 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4179_00305 PF03477 ATP cone domain J4179_00315 PF01757 Acyltransferase family J4179_00320 PF09339 IclR helix-turn-helix domain J4179_00320 PF01614 Bacterial transcriptional regulator J4179_00325 PF01232 Mannitol dehydrogenase Rossmann domain J4179_00325 PF08125 Mannitol dehydrogenase C-terminal domain J4179_00330 PF03786 D-mannonate dehydratase (UxuA) J4179_00335 PF01081 KDPG and KHG aldolase J4179_00340 PF00294 pfkB family carbohydrate kinase J4179_00345 PF00356 Bacterial regulatory proteins, lacI family J4179_00360 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00365 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00375 PF08544 GHMP kinases C terminal J4179_00375 PF10509 Galactokinase galactose-binding signature J4179_00375 PF00288 GHMP kinases N terminal domain J4179_00390 PF03747 ADP-ribosylglycohydrolase J4179_00400 PF07702 UTRA domain J4179_00400 PF00392 Bacterial regulatory proteins, gntR family J4179_00405 PF00005 ABC transporter J4179_00410 PF02653 Branched-chain amino acid transport system / permease component J4179_00415 PF13407 Periplasmic binding protein domain J4179_00420 PF00294 pfkB family carbohydrate kinase J4179_00420 PF01467 Cytidylyltransferase-like J4179_00425 PF02056 Family 4 glycosyl hydrolase J4179_00425 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4179_00430 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4179_00430 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4179_00435 PF01636 Phosphotransferase enzyme family J4179_00440 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain J4179_00440 PF17386 Lacto-N-biose phosphorylase C-terminal domain J4179_00440 PF17385 Lacto-N-biose phosphorylase central domain J4179_00445 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00450 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00460 PF00480 ROK family J4179_00465 PF00480 ROK family J4179_00470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4179_00470 PF00005 ABC transporter J4179_00475 PF12911 N-terminal TM domain of oligopeptide transport permease C J4179_00475 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00480 PF00528 Binding-protein-dependent transport system inner membrane component J4179_00485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4179_00490 PF00480 ROK family J4179_00505 PF03932 CutC family J4179_00520 PF00171 Aldehyde dehydrogenase family J4179_00525 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4179_00530 PF00171 Aldehyde dehydrogenase family J4179_00535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4179_00540 PF07690 Major Facilitator Superfamily J4179_00540 PF00083 Sugar (and other) transporter J4179_00545 PF07729 FCD domain J4179_00545 PF00392 Bacterial regulatory proteins, gntR family J4179_00550 PF07976 Phenol hydroxylase, C-terminal dimerisation domain J4179_00550 PF01494 FAD binding domain J4179_00555 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4179_00560 PF03328 HpcH/HpaI aldolase/citrate lyase family J4179_00570 PF02614 Glucuronate isomerase J4179_00575 PF03480 Bacterial extracellular solute-binding protein, family 7 J4179_00580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4179_00580 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4179_00585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4179_00595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4179_00595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4179_00605 PF01032 FecCD transport family J4179_00610 PF01032 FecCD transport family J4179_00615 PF00005 ABC transporter J4179_00620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4179_00620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4179_00620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4179_00620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4179_00630 PF00403 Heavy-metal-associated domain J4179_00645 PF09335 SNARE associated Golgi protein J4179_00650 PF00206 Lyase J4179_00650 PF08328 Adenylosuccinate lyase C-terminal J4179_00655 PF03881 Fructosamine kinase J4179_00660 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV J4179_00665 PF00155 Aminotransferase class I and II J4179_00680 PF17863 AAA lid domain J4179_00680 PF07726 ATPase family associated with various cellular activities (AAA) J4179_00710 PF01487 Type I 3-dehydroquinase J4179_00720 PF00296 Luciferase-like monooxygenase J4179_00730 PF00248 Aldo/keto reductase family J4179_00735 PF00762 Ferrochelatase J4179_00740 PF01066 CDP-alcohol phosphatidyltransferase J4179_00750 PF00884 Sulfatase J4179_00755 PF00884 Sulfatase J4179_00770 PF01661 Macro domain J4179_00800 PF03354 Phage Terminase J4179_00825 PF00145 C-5 cytosine-specific DNA methylase J4179_00835 PF01555 DNA methylase J4179_00845 PF13784 Fic/DOC family N-terminal J4179_00845 PF02661 Fic/DOC family J4179_00860 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) J4179_00865 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4179_00865 PF13244 Domain of unknown function (DUF4040) J4179_00865 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4179_00865 PF00361 Proton-conducting membrane transporter J4179_00870 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4179_00875 PF00361 Proton-conducting membrane transporter J4179_00885 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4179_00910 PF00005 ABC transporter J4179_00910 PF08402 TOBE domain J4179_00920 PF07690 Major Facilitator Superfamily J4179_00925 PF07883 Cupin domain J4179_00935 PF00480 ROK family J4179_00940 PF03649 Uncharacterised protein family (UPF0014) J4179_00950 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4179_00950 PF00326 Prolyl oligopeptidase family J4179_00960 PF12800 4Fe-4S binding domain J4179_00960 PF13247 4Fe-4S dicluster domain J4179_00965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4179_00965 PF01568 Molydopterin dinucleotide binding domain J4179_00965 PF00384 Molybdopterin oxidoreductase J4179_00970 PF02583 Metal-sensitive transcriptional repressor J4179_00975 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_00975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4179_00990 PF00156 Phosphoribosyl transferase domain J4179_00995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4179_00995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4179_01000 PF01979 Amidohydrolase family J4179_01005 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4179_01010 PF00156 Phosphoribosyl transferase domain J4179_01015 PF17191 RecG wedge domain J4179_01015 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J4179_01015 PF00270 DEAD/DEAH box helicase J4179_01025 PF01180 Dihydroorotate dehydrogenase J4179_01030 PF00012 Hsp70 protein J4179_01035 PF01025 GrpE J4179_01040 PF00226 DnaJ domain J4179_01040 PF01556 DnaJ C terminal domain J4179_01040 PF00684 DnaJ central domain J4179_01045 PF13411 MerR HTH family regulatory protein J4179_01050 PF00293 NUDIX domain J4179_01055 PF03009 Glycerophosphoryl diester phosphodiesterase family J4179_01060 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J4179_01060 PF07676 WD40-like Beta Propeller Repeat J4179_01060 PF00326 Prolyl oligopeptidase family J4179_01075 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4179_01090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4179_01090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4179_01090 PF06827 Zinc finger found in FPG and IleRS J4179_01095 PF10431 C-terminal, D2-small domain, of ClpB protein J4179_01095 PF02861 Clp amino terminal domain, pathogenicity island component J4179_01095 PF17871 AAA lid domain J4179_01095 PF07724 AAA domain (Cdc48 subfamily) J4179_01095 PF00004 ATPase family associated with various cellular activities (AAA) J4179_01100 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_01100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4179_01115 PF03372 Endonuclease/Exonuclease/phosphatase family J4179_01135 PF00293 NUDIX domain J4179_01145 PF01384 Phosphate transporter family J4179_01150 PF02146 Sir2 family J4179_01155 PF01116 Fructose-bisphosphate aldolase class-II J4179_01165 PF00709 Adenylosuccinate synthetase J4179_01170 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain J4179_01170 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain J4179_01175 PF01259 SAICAR synthetase J4179_01180 PF00440 Bacterial regulatory proteins, tetR family J4179_01185 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J4179_01185 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J4179_01195 PF00773 RNB domain J4179_01195 PF00575 S1 RNA binding domain J4179_01195 PF17876 Cold shock domain J4179_01220 PF02028 BCCT, betaine/carnitine/choline family transporter J4179_01230 PF17802 Prealbumin-like fold domain J4179_01230 PF05737 Collagen binding domain J4179_01230 PF05738 Cna protein B-type domain J4179_01250 PF07690 Major Facilitator Superfamily J4179_01255 PF00056 lactate/malate dehydrogenase, NAD binding domain J4179_01255 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4179_01265 PF02388 FemAB family J4179_01270 PF02388 FemAB family J4179_01275 PF02388 FemAB family J4179_01285 PF13936 Helix-turn-helix domain J4179_01285 PF00665 Integrase core domain J4179_01310 PF01641 SelR domain J4179_01335 PF13090 Polyphosphate kinase C-terminal domain 2 J4179_01335 PF02503 Polyphosphate kinase middle domain J4179_01335 PF13089 Polyphosphate kinase N-terminal domain J4179_01335 PF17941 Polyphosphate kinase C-terminal domain 1 J4179_01340 PF00293 NUDIX domain J4179_01340 PF00300 Histidine phosphatase superfamily (branch 1) J4179_01345 PF12849 PBP superfamily domain J4179_01350 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01355 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01360 PF00005 ABC transporter J4179_01365 PF01384 Phosphate transporter family J4179_01375 PF01235 Sodium:alanine symporter family J4179_01385 PF08768 Domain of unknown function (DUF1794) J4179_01405 PF02580 D-Tyr-tRNA(Tyr) deacylase J4179_01410 PF00004 ATPase family associated with various cellular activities (AAA) J4179_01410 PF17871 AAA lid domain J4179_01410 PF02861 Clp amino terminal domain, pathogenicity island component J4179_01410 PF10431 C-terminal, D2-small domain, of ClpB protein J4179_01410 PF07724 AAA domain (Cdc48 subfamily) J4179_01415 PF08240 Alcohol dehydrogenase GroES-like domain J4179_01415 PF00107 Zinc-binding dehydrogenase J4179_01420 PF02447 GntP family permease J4179_01425 PF01232 Mannitol dehydrogenase Rossmann domain J4179_01425 PF08125 Mannitol dehydrogenase C-terminal domain J4179_01435 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4179_01435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4179_01440 PF00294 pfkB family carbohydrate kinase J4179_01450 PF07690 Major Facilitator Superfamily J4179_01455 PF04198 Putative sugar-binding domain J4179_01470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4179_01470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4179_01485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4179_01485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4179_01490 PF00596 Class II Aldolase and Adducin N-terminal domain J4179_01495 PF02733 Dak1 domain J4179_01495 PF02734 DAK2 domain J4179_01500 PF08240 Alcohol dehydrogenase GroES-like domain J4179_01500 PF00107 Zinc-binding dehydrogenase J4179_01505 PF02502 Ribose/Galactose Isomerase J4179_01525 PF16355 Domain of unknown function (DUF4982) J4179_01525 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J4179_01525 PF00703 Glycosyl hydrolases family 2 J4179_01525 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4179_01525 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4179_01535 PF13649 Methyltransferase domain J4179_01540 PF00005 ABC transporter J4179_01555 PF01925 Sulfite exporter TauE/SafE J4179_01560 PF04055 Radical SAM superfamily J4179_01560 PF13186 Iron-sulfur cluster-binding domain J4179_01565 PF00083 Sugar (and other) transporter J4179_01570 PF00356 Bacterial regulatory proteins, lacI family J4179_01570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4179_01575 PF00884 Sulfatase J4179_01580 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_01590 PF00356 Bacterial regulatory proteins, lacI family J4179_01600 PF02929 Beta galactosidase small chain J4179_01600 PF16353 Domain of unknown function(DUF4981) J4179_01600 PF00703 Glycosyl hydrolases family 2 J4179_01600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4179_01600 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4179_01615 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01620 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01630 PF14338 Mrr N-terminal domain J4179_01630 PF04471 Restriction endonuclease J4179_01635 PF02447 GntP family permease J4179_01640 PF00291 Pyridoxal-phosphate dependent enzyme J4179_01645 PF13309 HTH domain J4179_01645 PF08348 YheO-like PAS domain J4179_01680 PF00271 Helicase conserved C-terminal domain J4179_01680 PF00176 SNF2 family N-terminal domain J4179_01685 PF04851 Type III restriction enzyme, res subunit J4179_01685 PF08774 VRR-NUC domain J4179_01690 PF01555 DNA methylase J4179_01690 PF18273 Type III R-M EcoP15I C-terminal domain J4179_01695 PF01555 DNA methylase J4179_01695 PF18273 Type III R-M EcoP15I C-terminal domain J4179_01730 PF01381 Helix-turn-helix J4179_01740 PF13091 PLD-like domain J4179_01745 PF00391 PEP-utilising enzyme, mobile domain J4179_01745 PF02896 PEP-utilising enzyme, TIM barrel domain J4179_01745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4179_01765 PF00128 Alpha amylase, catalytic domain J4179_01770 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01775 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01800 PF07664 Ferrous iron transport protein B C terminus J4179_01800 PF17910 FeoB cytosolic helical domain J4179_01800 PF02421 Ferrous iron transport protein B J4179_01800 PF07670 Nucleoside recognition J4179_01810 PF01565 FAD binding domain J4179_01810 PF13183 4Fe-4S dicluster domain J4179_01810 PF02913 FAD linked oxidases, C-terminal domain J4179_01820 PF12146 Serine aminopeptidase, S33 J4179_01825 PF00561 alpha/beta hydrolase fold J4179_01830 PF00877 NlpC/P60 family J4179_01835 PF00719 Inorganic pyrophosphatase J4179_01840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4179_01850 PF01171 PP-loop family J4179_01850 PF09179 TilS substrate binding domain J4179_01855 PF00156 Phosphoribosyl transferase domain J4179_01860 PF01434 Peptidase family M41 J4179_01860 PF17862 AAA+ lid domain J4179_01860 PF00004 ATPase family associated with various cellular activities (AAA) J4179_01865 PF01227 GTP cyclohydrolase I J4179_01870 PF00809 Pterin binding enzyme J4179_01875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4179_01895 PF00356 Bacterial regulatory proteins, lacI family J4179_01900 PF13416 Bacterial extracellular solute-binding protein J4179_01905 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01910 PF00528 Binding-protein-dependent transport system inner membrane component J4179_01915 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4179_01915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4179_01915 PF00703 Glycosyl hydrolases family 2 J4179_01915 PF16353 Domain of unknown function(DUF4981) J4179_01915 PF02929 Beta galactosidase small chain J4179_01920 PF05524 PEP-utilising enzyme, N-terminal J4179_01920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4179_01920 PF00381 PTS HPr component phosphorylation site J4179_01920 PF02896 PEP-utilising enzyme, TIM barrel domain J4179_01920 PF00391 PEP-utilising enzyme, mobile domain J4179_01925 PF02734 DAK2 domain J4179_01930 PF02733 Dak1 domain J4179_01940 PF02569 Pantoate-beta-alanine ligase J4179_01945 PF02261 Aspartate decarboxylase J4179_01955 PF00152 tRNA synthetases class II (D, K and N) J4179_01955 PF01336 OB-fold nucleic acid binding domain J4179_01960 PF03176 MMPL family J4179_01965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4179_01965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4179_01970 PF00230 Major intrinsic protein J4179_01990 PF02754 Cysteine-rich domain J4179_01990 PF13183 4Fe-4S dicluster domain J4179_01995 PF00890 FAD binding domain J4179_02000 PF04324 BFD-like [2Fe-2S] binding domain J4179_02000 PF01266 FAD dependent oxidoreductase J4179_02005 PF04198 Putative sugar-binding domain J4179_02010 PF00583 Acetyltransferase (GNAT) family J4179_02020 PF00730 HhH-GPD superfamily base excision DNA repair protein J4179_02020 PF00633 Helix-hairpin-helix motif J4179_02020 PF10576 Iron-sulfur binding domain of endonuclease III J4179_02030 PF18073 Rubredoxin metal binding domain J4179_02030 PF06745 KaiC J4179_02035 PF02254 TrkA-N domain J4179_02035 PF02080 TrkA-C domain J4179_02040 PF02386 Cation transport protein J4179_02045 PF12728 Helix-turn-helix domain J4179_02060 PF13333 Integrase core domain J4179_02060 PF00665 Integrase core domain J4179_02060 PF13276 HTH-like domain J4179_02070 PF00300 Histidine phosphatase superfamily (branch 1) J4179_02080 PF01040 UbiA prenyltransferase family J4179_02085 PF13193 AMP-binding enzyme C-terminal domain J4179_02085 PF00501 AMP-binding enzyme J4179_02095 PF00528 Binding-protein-dependent transport system inner membrane component J4179_02100 PF00528 Binding-protein-dependent transport system inner membrane component J4179_02105 PF01547 Bacterial extracellular solute-binding protein J4179_02110 PF00378 Enoyl-CoA hydratase/isomerase J4179_02115 PF13378 Enolase C-terminal domain-like J4179_02115 PF18374 Enolase N-terminal domain-like J4179_02120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4179_02120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4179_02125 PF13180 PDZ domain J4179_02130 PF00425 chorismate binding enzyme J4179_02135 PF01209 ubiE/COQ5 methyltransferase family J4179_02140 PF01494 FAD binding domain J4179_02145 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J4179_02150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J4179_02155 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J4179_02160 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J4179_02170 PF10531 SLBB domain J4179_02170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J4179_02170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4179_02175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4179_02175 PF01568 Molydopterin dinucleotide binding domain J4179_02175 PF00384 Molybdopterin oxidoreductase J4179_02180 PF00146 NADH dehydrogenase J4179_02185 PF12838 4Fe-4S dicluster domain J4179_02190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J4179_02195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4179_02200 PF00361 Proton-conducting membrane transporter J4179_02200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4179_02205 PF00361 Proton-conducting membrane transporter J4179_02210 PF00361 Proton-conducting membrane transporter J4179_02215 PF00348 Polyprenyl synthetase J4179_02220 PF07516 SecA Wing and Scaffold domain J4179_02220 PF01043 SecA preprotein cross-linking domain J4179_02220 PF07517 SecA DEAD-like domain J4179_02260 PF13476 AAA domain J4179_02265 PF12320 Type 5 capsule protein repressor C-terminal domain J4179_02265 PF00149 Calcineurin-like phosphoesterase J4179_02270 PF00459 Inositol monophosphatase family J4179_02275 PF03193 RsgA GTPase J4179_02280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4179_02290 PF04650 YSIRK type signal peptide J4179_02290 PF02973 Sialidase, N-terminal domain J4179_02290 PF13088 BNR repeat-like domain J4179_02295 PF07859 alpha/beta hydrolase fold J4179_02305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4179_02310 PF00528 Binding-protein-dependent transport system inner membrane component J4179_02315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4179_02315 PF00005 ABC transporter J4179_02320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4179_02320 PF00005 ABC transporter J4179_02325 PF00701 Dihydrodipicolinate synthetase family J4179_02330 PF00480 ROK family J4179_02335 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase J4179_02340 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4179_02345 PF01979 Amidohydrolase family J4179_02350 PF04542 Sigma-70 region 2 J4179_02350 PF08281 Sigma-70, region 4 J4179_02360 PF01476 LysM domain J4179_02360 PF00877 NlpC/P60 family J4179_02360 PF08239 Bacterial SH3 domain J4179_02370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4179_02370 PF16078 2-oxoglutarate dehydrogenase N-terminus J4179_02370 PF00676 Dehydrogenase E1 component J4179_02370 PF16870 2-oxoglutarate dehydrogenase C-terminal J4179_02370 PF02779 Transketolase, pyrimidine binding domain J4179_02375 PF00571 CBS domain J4179_02375 PF03471 Transporter associated domain J4179_02375 PF01595 Cyclin M transmembrane N-terminal domain J4179_02380 PF00571 CBS domain J4179_02380 PF01595 Cyclin M transmembrane N-terminal domain J4179_02385 PF01551 Peptidase family M23 J4179_02405 PF00005 ABC transporter J4179_02430 PF03485 Arginyl tRNA synthetase N terminal domain J4179_02430 PF05746 DALR anticodon binding domain J4179_02430 PF00750 tRNA synthetases class I (R) J4179_02435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4179_02435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4179_02440 PF01842 ACT domain J4179_02440 PF00742 Homoserine dehydrogenase J4179_02440 PF03447 Homoserine dehydrogenase, NAD binding domain J4179_02445 PF00291 Pyridoxal-phosphate dependent enzyme J4179_02450 PF00288 GHMP kinases N terminal domain J4179_02455 PF07498 Rho termination factor, N-terminal domain J4179_02455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4179_02455 PF07497 Rho termination factor, RNA-binding domain J4179_02460 PF01197 Ribosomal protein L31 J4179_02465 PF03462 PCRF domain J4179_02465 PF00472 RF-1 domain J4179_02470 PF13649 Methyltransferase domain J4179_02470 PF17827 PrmC N-terminal domain J4179_02475 PF01300 Telomere recombination J4179_02480 PF00953 Glycosyl transferase family 4 J4179_02490 PF00119 ATP synthase A chain J4179_02495 PF00137 ATP synthase subunit C J4179_02500 PF00430 ATP synthase B/B' CF(0) J4179_02505 PF00213 ATP synthase delta (OSCP) subunit J4179_02510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4179_02510 PF00306 ATP synthase alpha/beta chain, C terminal domain J4179_02510 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4179_02515 PF00231 ATP synthase J4179_02520 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4179_02520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4179_02525 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4179_02525 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4179_02535 PF01939 Endonuclease NucS J4179_02565 PF00128 Alpha amylase, catalytic domain J4179_02570 PF00356 Bacterial regulatory proteins, lacI family J4179_02580 PF00528 Binding-protein-dependent transport system inner membrane component J4179_02580 PF14785 Maltose transport system permease protein MalF P2 domain J4179_02585 PF00528 Binding-protein-dependent transport system inner membrane component J4179_02600 PF00128 Alpha amylase, catalytic domain J4179_02600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_02600 PF02806 Alpha amylase, C-terminal all-beta domain J4179_02605 PF18085 Maltokinase N-terminal cap domain J4179_02610 PF16657 Maltogenic Amylase, C-terminal domain J4179_02610 PF00128 Alpha amylase, catalytic domain J4179_02615 PF00128 Alpha amylase, catalytic domain J4179_02615 PF11896 Domain of unknown function (DUF3416) J4179_02625 PF02687 FtsX-like permease family J4179_02625 PF12704 MacB-like periplasmic core domain J4179_02625 PF00005 ABC transporter J4179_02640 PF00343 Carbohydrate phosphorylase J4179_02645 PF00579 tRNA synthetases class I (W and Y) J4179_02650 PF00128 Alpha amylase, catalytic domain J4179_02650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_02655 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J4179_02655 PF00293 NUDIX domain J4179_02655 PF09297 NADH pyrophosphatase zinc ribbon domain J4179_02660 PF00570 HRDC domain J4179_02660 PF00580 UvrD/REP helicase N-terminal domain J4179_02660 PF13361 UvrD-like helicase C-terminal domain J4179_02675 PF05362 Lon protease (S16) C-terminal proteolytic domain J4179_02675 PF13180 PDZ domain J4179_02685 PF03699 Uncharacterised protein family (UPF0182) J4179_02690 PF12905 Endo-alpha-N-acetylgalactosaminidase J4179_02690 PF17451 Glycosyl hydrolase 101 beta sandwich domain J4179_02690 PF08305 NPCBM/NEW2 domain J4179_02690 PF18080 Galactose mutarotase-like fold domain J4179_02690 PF17974 Galactose-binding domain-like J4179_02690 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase J4179_02715 PF01548 Transposase J4179_02715 PF02371 Transposase IS116/IS110/IS902 family J4179_02725 PF00392 Bacterial regulatory proteins, gntR family J4179_02730 PF00005 ABC transporter J4179_02740 PF01699 Sodium/calcium exchanger protein J4179_02750 PF00890 FAD binding domain J4179_02750 PF02910 Fumarate reductase flavoprotein C-term J4179_02755 PF13183 4Fe-4S dicluster domain J4179_02755 PF13085 2Fe-2S iron-sulfur cluster binding domain J4179_02770 PF00186 Dihydrofolate reductase J4179_02775 PF00303 Thymidylate synthase J4179_02785 PF12282 Signal transduction histidine kinase J4179_02785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_02785 PF07568 Histidine kinase J4179_02790 PF00248 Aldo/keto reductase family J4179_02795 PF02467 Transcription factor WhiB J4179_02805 PF00005 ABC transporter J4179_02805 PF09383 NIL domain J4179_02810 PF00196 Bacterial regulatory proteins, luxR family J4179_02810 PF00072 Response regulator receiver domain J4179_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_02815 PF07730 Histidine kinase J4179_02820 PF02586 SOS response associated peptidase (SRAP) J4179_02825 PF12826 Helix-hairpin-helix motif J4179_02825 PF00533 BRCA1 C Terminus (BRCT) domain J4179_02825 PF01653 NAD-dependent DNA ligase adenylation domain J4179_02825 PF03120 NAD-dependent DNA ligase OB-fold domain J4179_02825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4179_02830 PF00082 Subtilase family J4179_02830 PF04151 Bacterial pre-peptidase C-terminal domain J4179_02845 PF13333 Integrase core domain J4179_02845 PF13276 HTH-like domain J4179_02845 PF00665 Integrase core domain J4179_02850 PF13396 Phospholipase_D-nuclease N-terminal J4179_02850 PF13091 PLD-like domain J4179_02855 PF02686 Glu-tRNAGln amidotransferase C subunit J4179_02860 PF01425 Amidase J4179_02865 PF02637 GatB domain J4179_02865 PF02934 GatB/GatE catalytic domain J4179_02870 PF03949 Malic enzyme, NAD binding domain J4179_02870 PF00390 Malic enzyme, N-terminal domain J4179_02895 PF00291 Pyridoxal-phosphate dependent enzyme J4179_02920 PF08241 Methyltransferase domain J4179_02925 PF00920 Dehydratase family J4179_02930 PF02080 TrkA-C domain J4179_02930 PF06826 Predicted Permease Membrane Region J4179_02935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4179_02935 PF00205 Thiamine pyrophosphate enzyme, central domain J4179_02935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4179_02940 PF10369 Small subunit of acetolactate synthase J4179_02945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4179_02945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4179_02950 PF10415 Fumarase C C-terminus J4179_02950 PF00206 Lyase J4179_02965 PF00180 Isocitrate/isopropylmalate dehydrogenase J4179_02970 PF01063 Amino-transferase class IV J4179_02975 PF01228 Glycine radical J4179_02975 PF02901 Pyruvate formate lyase-like J4179_02980 PF02901 Pyruvate formate lyase-like J4179_02980 PF01228 Glycine radical J4179_02985 PF04055 Radical SAM superfamily J4179_02990 PF01168 Alanine racemase, N-terminal domain J4179_02995 PF00270 DEAD/DEAH box helicase J4179_02995 PF08148 DSHCT (NUC185) domain J4179_02995 PF00271 Helicase conserved C-terminal domain J4179_03010 PF12804 MobA-like NTP transferase domain J4179_03015 PF04991 LicD family J4179_03020 PF01501 Glycosyl transferase family 8 J4179_03020 PF00535 Glycosyl transferase family 2 J4179_03035 PF00535 Glycosyl transferase family 2 J4179_03050 PF00535 Glycosyl transferase family 2 J4179_03075 PF00929 Exonuclease J4179_03085 PF03193 RsgA GTPase J4179_03100 PF00005 ABC transporter J4179_03100 PF12848 ABC transporter J4179_03110 PF02446 4-alpha-glucanotransferase J4179_03115 PF02378 Phosphotransferase system, EIIC J4179_03115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4179_03115 PF00367 phosphotransferase system, EIIB J4179_03120 PF03352 Methyladenine glycosylase J4179_03125 PF11838 ERAP1-like C-terminal domain J4179_03125 PF01433 Peptidase family M1 domain J4179_03135 PF05661 Protein of unknown function (DUF808) J4179_03140 PF01431 Peptidase family M13 J4179_03140 PF05649 Peptidase family M13 J4179_03145 PF02502 Ribose/Galactose Isomerase J4179_03150 PF00132 Bacterial transferase hexapeptide (six repeats) J4179_03155 PF00291 Pyridoxal-phosphate dependent enzyme J4179_03160 PF09186 Domain of unknown function (DUF1949) J4179_03160 PF01205 Uncharacterized protein family UPF0029 J4179_03165 PF01783 Ribosomal L32p protein family J4179_03190 PF01906 Putative heavy-metal-binding J4179_03215 PF00248 Aldo/keto reductase family J4179_03220 PF05698 Bacterial trigger factor protein (TF) C-terminus J4179_03220 PF05697 Bacterial trigger factor protein (TF) J4179_03220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4179_03225 PF00574 Clp protease J4179_03230 PF00574 Clp protease J4179_03240 PF06689 ClpX C4-type zinc finger J4179_03240 PF10431 C-terminal, D2-small domain, of ClpB protein J4179_03240 PF07724 AAA domain (Cdc48 subfamily) J4179_03245 PF01817 Chorismate mutase type II J4179_03245 PF02153 Prephenate dehydrogenase J4179_03250 PF00501 AMP-binding enzyme J4179_03255 PF00133 tRNA synthetases class I (I, L, M and V) J4179_03255 PF08264 Anticodon-binding domain of tRNA J4179_03265 PF03807 NADP oxidoreductase coenzyme F420-dependent J4179_03265 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4179_03280 PF08264 Anticodon-binding domain of tRNA J4179_03280 PF00133 tRNA synthetases class I (I, L, M and V) J4179_03285 PF02875 Mur ligase family, glutamate ligase domain J4179_03285 PF08245 Mur ligase middle domain J4179_03295 PF00334 Nucleoside diphosphate kinase J4179_03300 PF06470 SMC proteins Flexible Hinge Domain J4179_03300 PF02463 RecF/RecN/SMC N terminal domain J4179_03310 PF03606 C4-dicarboxylate anaerobic carrier J4179_03315 PF07687 Peptidase dimerisation domain J4179_03315 PF01546 Peptidase family M20/M25/M40 J4179_03320 PF00448 SRP54-type protein, GTPase domain J4179_03320 PF02881 SRP54-type protein, helical bundle domain J4179_03325 PF02978 Signal peptide binding domain J4179_03325 PF00448 SRP54-type protein, GTPase domain J4179_03325 PF02881 SRP54-type protein, helical bundle domain J4179_03330 PF01979 Amidohydrolase family J4179_03335 PF01545 Cation efflux family J4179_03335 PF16916 Dimerisation domain of Zinc Transporter J4179_03340 PF00886 Ribosomal protein S16 J4179_03350 PF05239 PRC-barrel domain J4179_03350 PF01782 RimM N-terminal domain J4179_03355 PF01746 tRNA (Guanine-1)-methyltransferase J4179_03360 PF01245 Ribosomal protein L19 J4179_03365 PF10502 Signal peptidase, peptidase S26 J4179_03370 PF01351 Ribonuclease HII J4179_03375 PF10611 Protein of unknown function (DUF2469) J4179_03380 PF02021 Uncharacterised protein family UPF0102 J4179_03385 PF01078 Magnesium chelatase, subunit ChlI J4179_03385 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4179_03390 PF02481 DNA recombination-mediator protein A J4179_03390 PF17782 DprA winged helix domain J4179_03395 PF00589 Phage integrase family J4179_03395 PF02899 Phage integrase, N-terminal SAM-like domain J4179_03405 PF03458 UPF0126 domain J4179_03410 PF00318 Ribosomal protein S2 J4179_03415 PF00889 Elongation factor TS J4179_03420 PF01012 Electron transfer flavoprotein domain J4179_03425 PF00766 Electron transfer flavoprotein FAD-binding domain J4179_03425 PF01012 Electron transfer flavoprotein domain J4179_03430 PF01494 FAD binding domain J4179_03440 PF07690 Major Facilitator Superfamily J4179_03450 PF00696 Amino acid kinase family J4179_03455 PF01765 Ribosome recycling factor J4179_03465 PF04055 Radical SAM superfamily J4179_03475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4179_03475 PF13288 DXP reductoisomerase C-terminal domain J4179_03475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4179_03480 PF02163 Peptidase family M50 J4179_03480 PF17820 PDZ domain J4179_03485 PF04551 GcpE protein J4179_03495 PF04073 Aminoacyl-tRNA editing domain J4179_03495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4179_03495 PF03129 Anticodon binding domain J4179_03505 PF02576 RimP N-terminal domain J4179_03505 PF17384 RimP C-terminal SH3 domain J4179_03510 PF13184 NusA-like KH domain J4179_03510 PF08529 NusA N-terminal domain J4179_03520 PF00009 Elongation factor Tu GTP binding domain J4179_03520 PF11987 Translation-initiation factor 2 J4179_03520 PF04760 Translation initiation factor IF-2, N-terminal region J4179_03525 PF02033 Ribosome-binding factor A J4179_03530 PF09142 tRNA Pseudouridine synthase II, C terminal J4179_03530 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4179_03530 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4179_03535 PF00512 His Kinase A (phospho-acceptor) domain J4179_03535 PF18698 Histidine kinase sensor domain J4179_03535 PF00672 HAMP domain J4179_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_03535 PF00989 PAS fold J4179_03540 PF00486 Transcriptional regulatory protein, C terminal J4179_03540 PF00072 Response regulator receiver domain J4179_03545 PF07690 Major Facilitator Superfamily J4179_03555 PF08402 TOBE domain J4179_03555 PF00005 ABC transporter J4179_03575 PF06574 FAD synthetase J4179_03575 PF01687 Riboflavin kinase J4179_03585 PF00005 ABC transporter J4179_03620 PF13276 HTH-like domain J4179_03620 PF01527 Transposase J4179_03620 PF00665 Integrase core domain J4179_03620 PF13333 Integrase core domain J4179_03645 PF00312 Ribosomal protein S15 J4179_03650 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4179_03650 PF01138 3' exoribonuclease family, domain 1 J4179_03650 PF00575 S1 RNA binding domain J4179_03650 PF00013 KH domain J4179_03660 PF00675 Insulinase (Peptidase family M16) J4179_03660 PF05193 Peptidase M16 inactive domain J4179_03665 PF05173 Dihydrodipicolinate reductase, C-terminus J4179_03665 PF01113 Dihydrodipicolinate reductase, N-terminus J4179_03670 PF00176 SNF2 family N-terminal domain J4179_03670 PF00271 Helicase conserved C-terminal domain J4179_03670 PF12419 SNF2 Helicase protein J4179_03685 PF00701 Dihydrodipicolinate synthetase family J4179_03690 PF12706 Beta-lactamase superfamily domain J4179_03690 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4179_03690 PF17770 Ribonuclease J C-terminal domain J4179_03695 PF17854 FtsK alpha domain J4179_03695 PF09397 Ftsk gamma domain J4179_03695 PF01580 FtsK/SpoIIIE family J4179_03705 PF01066 CDP-alcohol phosphatidyltransferase J4179_03710 PF02464 Competence-damaged protein J4179_03710 PF18146 Damage-inducible protein CinA KH domain J4179_03710 PF00994 Probable molybdopterin binding domain J4179_03725 PF00154 recA bacterial DNA recombination protein J4179_03730 PF02631 RecX family J4179_03735 PF04055 Radical SAM superfamily J4179_03735 PF00919 Uncharacterized protein family UPF0004 J4179_03745 PF05175 Methyltransferase small domain J4179_03750 PF13167 GTP-binding GTPase N-terminal J4179_03750 PF16360 GTP-binding GTPase Middle Region J4179_03750 PF01926 50S ribosome-binding GTPase J4179_03755 PF13307 Helicase C-terminal domain J4179_03760 PF00717 Peptidase S24-like J4179_03760 PF01726 LexA DNA binding domain J4179_03770 PF03477 ATP cone domain J4179_03775 PF00501 AMP-binding enzyme J4179_03775 PF13193 AMP-binding enzyme C-terminal domain J4179_03780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4179_03780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4179_03805 PF00817 impB/mucB/samB family J4179_03805 PF11799 impB/mucB/samB family C-terminal domain J4179_03815 PF02381 MraZ protein, putative antitoxin-like J4179_03820 PF01795 MraW methylase family J4179_03830 PF03717 Penicillin-binding Protein dimerisation domain J4179_03830 PF00905 Penicillin binding protein transpeptidase domain J4179_03835 PF08245 Mur ligase middle domain J4179_03835 PF02875 Mur ligase family, glutamate ligase domain J4179_03835 PF01225 Mur ligase family, catalytic domain J4179_03840 PF08245 Mur ligase middle domain J4179_03840 PF02875 Mur ligase family, glutamate ligase domain J4179_03840 PF01225 Mur ligase family, catalytic domain J4179_03845 PF00953 Glycosyl transferase family 4 J4179_03845 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4179_03850 PF08245 Mur ligase middle domain J4179_03850 PF02875 Mur ligase family, glutamate ligase domain J4179_03855 PF01098 Cell cycle protein J4179_03860 PF03033 Glycosyltransferase family 28 N-terminal domain J4179_03860 PF04101 Glycosyltransferase family 28 C-terminal domain J4179_03865 PF01225 Mur ligase family, catalytic domain J4179_03865 PF08245 Mur ligase middle domain J4179_03865 PF02875 Mur ligase family, glutamate ligase domain J4179_03875 PF00091 Tubulin/FtsZ family, GTPase domain J4179_03875 PF12327 FtsZ family, C-terminal domain J4179_03880 PF02578 Multi-copper polyphenol oxidoreductase laccase J4179_03885 PF04472 Cell division protein SepF J4179_03900 PF01252 Signal peptidase (SPase) II J4179_03905 PF00849 RNA pseudouridylate synthase J4179_03910 PF13673 Acetyltransferase (GNAT) domain J4179_03915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4179_03915 PF02811 PHP domain J4179_03915 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4179_03915 PF14579 Helix-hairpin-helix motif J4179_03930 PF01475 Ferric uptake regulator family J4179_03935 PF00950 ABC 3 transport family J4179_03940 PF00005 ABC transporter J4179_03950 PF03129 Anticodon binding domain J4179_03950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4179_03960 PF01207 Dihydrouridine synthase (Dus) J4179_03970 PF13286 Phosphohydrolase-associated domain J4179_03970 PF01966 HD domain J4179_03975 PF10410 DnaB-helicase binding domain of primase J4179_03975 PF08278 DNA primase DnaG DnaB-binding J4179_03975 PF13662 Toprim domain J4179_03975 PF08275 DNA primase catalytic core, N-terminal domain J4179_03975 PF01807 CHC2 zinc finger J4179_03985 PF00902 Sec-independent protein translocase protein (TatC) J4179_03990 PF02416 mttA/Hcf106 family J4179_03995 PF02416 mttA/Hcf106 family J4179_04025 PF01032 FecCD transport family J4179_04030 PF00005 ABC transporter J4179_04065 PF01327 Polypeptide deformylase J4179_04070 PF01370 NAD dependent epimerase/dehydratase family J4179_04070 PF08338 Domain of unknown function (DUF1731) J4179_04090 PF01300 Telomere recombination J4179_04095 PF13419 Haloacid dehalogenase-like hydrolase J4179_04100 PF00005 ABC transporter J4179_04100 PF00664 ABC transporter transmembrane region J4179_04105 PF00664 ABC transporter transmembrane region J4179_04105 PF00005 ABC transporter J4179_04110 PF07690 Major Facilitator Superfamily J4179_04115 PF17831 Pyruvate dehydrogenase E1 component middle domain J4179_04115 PF00456 Transketolase, thiamine diphosphate binding domain J4179_04130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_04130 PF11852 Domain of unknown function (DUF3372) J4179_04130 PF03714 Bacterial pullanase-associated domain J4179_04130 PF18494 Pullulanase Ins domain J4179_04130 PF17967 Pullulanase N2 domain J4179_04135 PF17967 Pullulanase N2 domain J4179_04135 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_04135 PF11852 Domain of unknown function (DUF3372) J4179_04135 PF18494 Pullulanase Ins domain J4179_04135 PF03714 Bacterial pullanase-associated domain J4179_04145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4179_04150 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4179_04155 PF01784 NIF3 (NGG1p interacting factor 3) J4179_04175 PF00480 ROK family J4179_04180 PF00557 Metallopeptidase family M24 J4179_04190 PF00120 Glutamine synthetase, catalytic domain J4179_04190 PF03951 Glutamine synthetase, beta-Grasp domain J4179_04195 PF08335 GlnD PII-uridylyltransferase J4179_04195 PF03710 Glutamate-ammonia ligase adenylyltransferase J4179_04215 PF00665 Integrase core domain J4179_04220 PF01695 IstB-like ATP binding protein J4179_04245 PF00120 Glutamine synthetase, catalytic domain J4179_04245 PF03951 Glutamine synthetase, beta-Grasp domain J4179_04265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4179_04265 PF00364 Biotin-requiring enzyme J4179_04265 PF02817 e3 binding domain J4179_04270 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_04270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4179_04280 PF02789 Cytosol aminopeptidase family, N-terminal domain J4179_04280 PF00883 Cytosol aminopeptidase family, catalytic domain J4179_04295 PF07687 Peptidase dimerisation domain J4179_04295 PF01546 Peptidase family M20/M25/M40 J4179_04305 PF01521 Iron-sulphur cluster biosynthesis J4179_04315 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4179_04315 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4179_04335 PF01541 GIY-YIG catalytic domain J4179_04335 PF00929 Exonuclease J4179_04345 PF00365 Phosphofructokinase J4179_04350 PF01474 Class-II DAHP synthetase family J4179_04355 PF03793 PASTA domain J4179_04355 PF00069 Protein kinase domain J4179_04360 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4179_04360 PF01464 Transglycosylase SLT domain J4179_04370 PF00348 Polyprenyl synthetase J4179_04385 PF00140 Sigma-70 factor, region 1.2 J4179_04385 PF04542 Sigma-70 region 2 J4179_04385 PF04539 Sigma-70 region 3 J4179_04385 PF04545 Sigma-70, region 4 J4179_04390 PF11490 DNA polymerase III polC-type N-terminus II J4179_04390 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4179_04390 PF02811 PHP domain J4179_04390 PF14579 Helix-hairpin-helix motif J4179_04390 PF01336 OB-fold nucleic acid binding domain J4179_04390 PF00929 Exonuclease J4179_04390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4179_04400 PF00204 DNA gyrase B J4179_04400 PF00986 DNA gyrase B subunit, carboxyl terminus J4179_04400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_04400 PF01751 Toprim domain J4179_04415 PF03989 DNA gyrase C-terminal domain, beta-propeller J4179_04415 PF00521 DNA gyrase/topoisomerase IV, subunit A J4179_04455 PF02080 TrkA-C domain J4179_04455 PF02254 TrkA-N domain J4179_04460 PF02080 TrkA-C domain J4179_04460 PF02254 TrkA-N domain J4179_04470 PF05958 tRNA (Uracil-5-)-methyltransferase J4179_04475 PF00330 Aconitase family (aconitate hydratase) J4179_04475 PF00694 Aconitase C-terminal domain J4179_04480 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4179_04480 PF02780 Transketolase, C-terminal domain J4179_04480 PF02779 Transketolase, pyrimidine binding domain J4179_04485 PF01612 3'-5' exonuclease J4179_04485 PF00570 HRDC domain J4179_04495 PF00128 Alpha amylase, catalytic domain J4179_04495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_04500 PF00128 Alpha amylase, catalytic domain J4179_04505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4179_04505 PF00128 Alpha amylase, catalytic domain J4179_04545 PF00196 Bacterial regulatory proteins, luxR family J4179_04545 PF00072 Response regulator receiver domain J4179_04550 PF03313 Serine dehydratase alpha chain J4179_04550 PF03315 Serine dehydratase beta chain J4179_04555 PF03129 Anticodon binding domain J4179_04555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4179_04555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4179_04560 PF01066 CDP-alcohol phosphatidyltransferase J4179_04570 PF13439 Glycosyltransferase Family 4 J4179_04585 PF03099 Biotin/lipoate A/B protein ligase family J4179_04585 PF00293 NUDIX domain J4179_04590 PF01709 Transcriptional regulator J4179_04595 PF02075 Crossover junction endodeoxyribonuclease RuvC J4179_04600 PF07499 RuvA, C-terminal domain J4179_04600 PF01330 RuvA N terminal domain J4179_04605 PF05491 RuvB C-terminal winged helix domain J4179_04605 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4179_04605 PF17864 RuvB AAA lid domain J4179_04615 PF07549 SecD/SecF GG Motif J4179_04615 PF02355 Protein export membrane protein J4179_04620 PF07549 SecD/SecF GG Motif J4179_04620 PF02355 Protein export membrane protein J4179_04625 PF00156 Phosphoribosyl transferase domain J4179_04630 PF02824 TGS domain J4179_04630 PF04607 Region found in RelA / SpoT proteins J4179_04630 PF13291 ACT domain J4179_04640 PF03993 Domain of Unknown Function (DUF349) J4179_04645 PF00753 Metallo-beta-lactamase superfamily J4179_04650 PF13393 Histidyl-tRNA synthetase J4179_04650 PF03129 Anticodon binding domain J4179_04655 PF01926 50S ribosome-binding GTPase J4179_04655 PF07650 KH domain J4179_04660 PF12631 MnmE helical domain J4179_04660 PF10396 GTP-binding protein TrmE N-terminus J4179_04660 PF01926 50S ribosome-binding GTPase J4179_04670 PF00271 Helicase conserved C-terminal domain J4179_04670 PF03880 DbpA RNA binding domain J4179_04670 PF00270 DEAD/DEAH box helicase J4179_04675 PF07690 Major Facilitator Superfamily J4179_04680 PF02938 GAD domain J4179_04680 PF00152 tRNA synthetases class II (D, K and N) J4179_04680 PF01336 OB-fold nucleic acid binding domain J4179_04695 PF03176 MMPL family J4179_04700 PF00004 ATPase family associated with various cellular activities (AAA) J4179_04700 PF16193 AAA C-terminal domain J4179_04700 PF12002 MgsA AAA+ ATPase C terminal J4179_04705 PF00163 Ribosomal protein S4/S9 N-terminal domain J4179_04705 PF01479 S4 domain J4179_04715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4179_04715 PF01411 tRNA synthetases class II (A) J4179_04715 PF02272 DHHA1 domain J4179_04720 PF03652 Holliday junction resolvase J4179_04740 PF01264 Chorismate synthase J4179_04745 PF01761 3-dehydroquinate synthase J4179_04745 PF01202 Shikimate kinase J4179_04760 PF01132 Elongation factor P (EF-P) OB domain J4179_04760 PF08207 Elongation factor P (EF-P) KOW-like domain J4179_04760 PF09285 Elongation factor P, C-terminal J4179_04765 PF01029 NusB family J4179_04770 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4179_04770 PF00117 Glutamine amidotransferase class-I J4179_04775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4179_04775 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4179_04775 PF02142 MGS-like domain J4179_04785 PF00625 Guanylate kinase J4179_04790 PF01192 RNA polymerase Rpb6 J4179_04795 PF02441 Flavoprotein J4179_04795 PF04127 DNA / pantothenate metabolism flavoprotein J4179_04800 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4179_04800 PF02772 S-adenosylmethionine synthetase, central domain J4179_04800 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4179_04805 PF17764 3′ DNA-binding domain (3′BD) J4179_04810 PF02911 Formyl transferase, C-terminal domain J4179_04810 PF00551 Formyl transferase J4179_04815 PF01189 16S rRNA methyltransferase RsmB/F J4179_04815 PF01029 NusB family J4179_04820 PF00834 Ribulose-phosphate 3 epimerase family J4179_04825 PF00528 Binding-protein-dependent transport system inner membrane component J4179_04830 PF09084 NMT1/THI5 like J4179_04835 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4179_04840 PF08029 HisG, C-terminal domain J4179_04840 PF01634 ATP phosphoribosyltransferase J4179_04865 PF00781 Diacylglycerol kinase catalytic domain J4179_04870 PF08148 DSHCT (NUC185) domain J4179_04870 PF00270 DEAD/DEAH box helicase J4179_04870 PF00271 Helicase conserved C-terminal domain J4179_04875 PF00795 Carbon-nitrogen hydrolase J4179_04880 PF00535 Glycosyl transferase family 2 J4179_04885 PF13397 RNA polymerase-binding protein J4179_04895 PF13411 MerR HTH family regulatory protein J4179_04905 PF16697 Inner membrane component of T3SS, cytoplasmic domain J4179_04910 PF01433 Peptidase family M1 domain J4179_04910 PF11838 ERAP1-like C-terminal domain J4179_04925 PF00365 Phosphofructokinase J4179_04930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4179_04930 PF01926 50S ribosome-binding GTPase J4179_04935 PF02224 Cytidylate kinase J4179_04940 PF01479 S4 domain J4179_04940 PF00849 RNA pseudouridylate synthase J4179_04945 PF04079 Segregation and condensation complex subunit ScpB J4179_04950 PF02616 Segregation and condensation protein ScpA J4179_04955 PF13614 AAA domain J4179_04960 PF02899 Phage integrase, N-terminal SAM-like domain J4179_04960 PF00589 Phage integrase family J4179_04965 PF02779 Transketolase, pyrimidine binding domain J4179_04965 PF02780 Transketolase, C-terminal domain J4179_04965 PF00456 Transketolase, thiamine diphosphate binding domain J4179_04970 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4179_04975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4179_04975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4179_04985 PF03840 Preprotein translocase SecG subunit J4179_04990 PF00121 Triosephosphate isomerase J4179_04995 PF00162 Phosphoglycerate kinase J4179_05000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4179_05000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4179_05005 PF02650 WhiA C-terminal HTH domain J4179_05005 PF14527 WhiA LAGLIDADG-like domain J4179_05005 PF10298 WhiA N-terminal LAGLIDADG-like domain J4179_05010 PF01933 Uncharacterised protein family UPF0052 J4179_05015 PF03668 P-loop ATPase protein family J4179_05020 PF08459 UvrC Helix-hairpin-helix N-terminal J4179_05020 PF02151 UvrB/uvrC motif J4179_05020 PF01541 GIY-YIG catalytic domain J4179_05025 PF17755 UvrA DNA-binding domain J4179_05025 PF17760 UvrA interaction domain J4179_05025 PF00005 ABC transporter J4179_05035 PF13593 SBF-like CPA transporter family (DUF4137) J4179_05040 PF03741 Integral membrane protein TerC family J4179_05045 PF00271 Helicase conserved C-terminal domain J4179_05045 PF04851 Type III restriction enzyme, res subunit J4179_05045 PF02151 UvrB/uvrC motif J4179_05045 PF12344 Ultra-violet resistance protein B J4179_05045 PF17757 UvrB interaction domain J4179_05050 PF01121 Dephospho-CoA kinase J4179_05055 PF01470 Pyroglutamyl peptidase J4179_05060 PF00575 S1 RNA binding domain J4179_05065 PF08241 Methyltransferase domain J4179_05070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4179_05070 PF01367 5'-3' exonuclease, C-terminal SAM fold J4179_05070 PF00476 DNA polymerase family A J4179_05080 PF00072 Response regulator receiver domain J4179_05080 PF03861 ANTAR domain J4179_05090 PF00224 Pyruvate kinase, barrel domain J4179_05090 PF02887 Pyruvate kinase, alpha/beta domain J4179_05095 PF01790 Prolipoprotein diacylglyceryl transferase J4179_05100 PF00290 Tryptophan synthase alpha chain J4179_05105 PF00290 Tryptophan synthase alpha chain J4179_05110 PF00291 Pyridoxal-phosphate dependent enzyme J4179_05115 PF00218 Indole-3-glycerol phosphate synthase J4179_05120 PF01502 Phosphoribosyl-AMP cyclohydrolase J4179_05125 PF00977 Histidine biosynthesis protein J4179_05140 PF03136 Pup-ligase protein J4179_05145 PF05639 Pup-like protein J4179_05150 PF03136 Pup-ligase protein J4179_05155 PF00004 ATPase family associated with various cellular activities (AAA) J4179_05155 PF17758 Proteasomal ATPase OB N-terminal domain J4179_05155 PF16450 Proteasomal ATPase OB C-terminal domain J4179_05160 PF08704 tRNA methyltransferase complex GCD14 subunit J4179_05170 PF13419 Haloacid dehalogenase-like hydrolase J4179_05175 PF02673 Bacitracin resistance protein BacA J4179_05190 PF07687 Peptidase dimerisation domain J4179_05190 PF01546 Peptidase family M20/M25/M40 J4179_05195 PF04107 Glutamate-cysteine ligase family 2(GCS2) J4179_05200 PF00117 Glutamine amidotransferase class-I J4179_05200 PF00958 GMP synthase C terminal domain J4179_05205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4179_05205 PF01488 Shikimate / quinate 5-dehydrogenase J4179_05205 PF08501 Shikimate dehydrogenase substrate binding domain J4179_05225 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4179_05225 PF02811 PHP domain J4179_05225 PF01336 OB-fold nucleic acid binding domain J4179_05225 PF14579 Helix-hairpin-helix motif J4179_05225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4179_05240 PF01161 Phosphatidylethanolamine-binding protein J4179_05245 PF00588 SpoU rRNA Methylase family J4179_05260 PF00588 SpoU rRNA Methylase family J4179_05265 PF01145 SPFH domain / Band 7 family J4179_05275 PF00005 ABC transporter J4179_05280 PF13439 Glycosyltransferase Family 4 J4179_05280 PF00534 Glycosyl transferases group 1 J4179_05285 PF00483 Nucleotidyl transferase J4179_05305 PF12848 ABC transporter J4179_05305 PF00005 ABC transporter J4179_05310 PF04228 Putative neutral zinc metallopeptidase J4179_05315 PF00581 Rhodanese-like domain J4179_05320 PF01883 Iron-sulfur cluster assembly protein J4179_05330 PF00266 Aminotransferase class-V J4179_05335 PF00005 ABC transporter J4179_05340 PF00355 Rieske [2Fe-2S] domain J4179_05345 PF01458 Uncharacterized protein family (UPF0051) J4179_05350 PF01458 Uncharacterized protein family (UPF0051) J4179_05365 PF03023 Lipid II flippase MurJ J4179_05385 PF02463 RecF/RecN/SMC N terminal domain J4179_05390 PF01513 ATP-NAD kinase J4179_05395 PF01728 FtsJ-like methyltransferase J4179_05395 PF01479 S4 domain J4179_05405 PF18407 GCN5-related N-acetyltransferase like domain J4179_05405 PF13344 Haloacid dehalogenase-like hydrolase J4179_05435 PF00950 ABC 3 transport family J4179_05440 PF00950 ABC 3 transport family J4179_05445 PF00005 ABC transporter J4179_05455 PF00579 tRNA synthetases class I (W and Y) J4179_05460 PF00005 ABC transporter J4179_05470 PF01381 Helix-turn-helix J4179_05475 PF14698 Argininosuccinate lyase C-terminal J4179_05475 PF00206 Lyase J4179_05480 PF16363 GDP-mannose 4,6 dehydratase J4179_05485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4179_05485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4179_05495 PF00764 Arginosuccinate synthase J4179_05500 PF02863 Arginine repressor, C-terminal domain J4179_05500 PF01316 Arginine repressor, DNA binding domain J4179_05505 PF00202 Aminotransferase class-III J4179_05510 PF00696 Amino acid kinase family J4179_05515 PF01960 ArgJ family J4179_05520 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4179_05520 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4179_05530 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4179_05530 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4179_05535 PF04073 Aminoacyl-tRNA editing domain J4179_05540 PF03147 Ferredoxin-fold anticodon binding domain J4179_05540 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4179_05540 PF03484 tRNA synthetase B5 domain J4179_05540 PF03483 B3/4 domain J4179_05540 PF01588 Putative tRNA binding domain J4179_05545 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4179_05545 PF01409 tRNA synthetases class II core domain (F) J4179_05555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4179_05560 PF00588 SpoU rRNA Methylase family J4179_05560 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4179_05570 PF00453 Ribosomal protein L20 J4179_05575 PF01632 Ribosomal protein L35 J4179_05580 PF00707 Translation initiation factor IF-3, C-terminal domain J4179_05580 PF05198 Translation initiation factor IF-3, N-terminal domain J4179_05590 PF00977 Histidine biosynthesis protein J4179_05595 PF00117 Glutamine amidotransferase class-I J4179_05605 PF00475 Imidazoleglycerol-phosphate dehydratase J4179_05610 PF00155 Aminotransferase class I and II J4179_05615 PF00815 Histidinol dehydrogenase J4179_05620 PF01255 Putative undecaprenyl diphosphate synthase J4179_05625 PF02565 Recombination protein O C terminal J4179_05625 PF11967 Recombination protein O N terminal J4179_05630 PF00682 HMGL-like J4179_05630 PF08502 LeuA allosteric (dimerisation) domain J4179_05635 PF13191 AAA ATPase domain J4179_05635 PF00069 Protein kinase domain J4179_05655 PF07650 KH domain J4179_05655 PF01926 50S ribosome-binding GTPase J4179_05660 PF03471 Transporter associated domain J4179_05660 PF01595 Cyclin M transmembrane N-terminal domain J4179_05660 PF00571 CBS domain J4179_05665 PF02130 Uncharacterized protein family UPF0054 J4179_05670 PF02562 PhoH-like protein J4179_05675 PF04452 RNA methyltransferase J4179_05680 PF00226 DnaJ domain J4179_05680 PF00684 DnaJ central domain J4179_05680 PF01556 DnaJ C terminal domain J4179_05685 PF08220 DeoR-like helix-turn-helix domain J4179_05685 PF01628 HrcA protein C terminal domain J4179_05700 PF04055 Radical SAM superfamily J4179_05705 PF02390 Putative methyltransferase J4179_05710 PF00679 Elongation factor G C-terminus J4179_05710 PF00009 Elongation factor Tu GTP binding domain J4179_05710 PF06421 GTP-binding protein LepA C-terminus J4179_05730 PF05532 CsbD-like J4179_05735 PF01649 Ribosomal protein S20 J4179_05740 PF02233 NAD(P) transhydrogenase beta subunit J4179_05745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4179_05745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4179_05745 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4179_05755 PF03772 Competence protein J4179_05755 PF00753 Metallo-beta-lactamase superfamily J4179_05760 PF10531 SLBB domain J4179_05765 PF05872 Bacterial protein of unknown function (DUF853) J4179_05775 PF08264 Anticodon-binding domain of tRNA J4179_05775 PF13603 Leucyl-tRNA synthetase, Domain 2 J4179_05775 PF09334 tRNA synthetases class I (M) J4179_05780 PF01230 HIT domain J4179_05795 PF01594 AI-2E family transporter J4179_05800 PF01048 Phosphorylase superfamily J4179_05805 PF00950 ABC 3 transport family J4179_05805 PF02742 Iron dependent repressor, metal binding and dimerisation domain J4179_05810 PF00265 Thymidine kinase J4179_05820 PF01022 Bacterial regulatory protein, arsR family J4179_05830 PF01297 Zinc-uptake complex component A periplasmic J4179_05830 PF01297 Zinc-uptake complex component A periplasmic J4179_05840 PF00005 ABC transporter J4179_05845 PF00950 ABC 3 transport family J4179_05850 PF00294 pfkB family carbohydrate kinase J4179_05865 PF01569 PAP2 superfamily J4179_05885 PF00324 Amino acid permease J4179_05895 PF05683 Fumarase C-terminus J4179_05895 PF05681 Fumarate hydratase (Fumerase) J4179_05900 PF00005 ABC transporter J4179_05900 PF09383 NIL domain J4179_05905 PF00528 Binding-protein-dependent transport system inner membrane component J4179_05910 PF03180 NLPA lipoprotein J4179_05915 PF00324 Amino acid permease J4179_05925 PF03591 AzlC protein J4179_05930 PF01136 Peptidase family U32 J4179_05930 PF16325 Peptidase family U32 C-terminal domain J4179_05935 PF01174 SNO glutamine amidotransferase family J4179_05940 PF01680 SOR/SNZ family J4179_05945 PF00392 Bacterial regulatory proteins, gntR family J4179_05955 PF01910 Thiamine-binding protein J4179_05965 PF00356 Bacterial regulatory proteins, lacI family J4179_05970 PF00703 Glycosyl hydrolases family 2 J4179_05970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4179_05970 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4179_05980 PF00933 Glycosyl hydrolase family 3 N terminal domain J4179_05995 PF01522 Polysaccharide deacetylase J4179_06000 PF00291 Pyridoxal-phosphate dependent enzyme J4179_06025 PF00300 Histidine phosphatase superfamily (branch 1) J4179_06040 PF01467 Cytidylyltransferase-like J4179_06045 PF00085 Thioredoxin J4179_06055 PF01018 GTP1/OBG J4179_06055 PF09269 Domain of unknown function (DUF1967) J4179_06055 PF01926 50S ribosome-binding GTPase J4179_06060 PF01016 Ribosomal L27 protein J4179_06065 PF00829 Ribosomal prokaryotic L21 protein J4179_06070 PF10150 Ribonuclease E/G family J4179_06075 PF01654 Cytochrome bd terminal oxidase subunit I J4179_06080 PF02322 Cytochrome bd terminal oxidase subunit II J4179_06085 PF00664 ABC transporter transmembrane region J4179_06085 PF00005 ABC transporter J4179_06090 PF00664 ABC transporter transmembrane region J4179_06090 PF00005 ABC transporter J4179_06095 PF13185 GAF domain J4179_06095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_06095 PF07730 Histidine kinase J4179_06100 PF00664 ABC transporter transmembrane region J4179_06100 PF00005 ABC transporter J4179_06105 PF00664 ABC transporter transmembrane region J4179_06105 PF00005 ABC transporter J4179_06110 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4179_06110 PF00578 AhpC/TSA family J4179_06115 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_06115 PF13192 Thioredoxin domain J4179_06120 PF00196 Bacterial regulatory proteins, luxR family J4179_06120 PF00072 Response regulator receiver domain J4179_06125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4179_06125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4179_06125 PF06827 Zinc finger found in FPG and IleRS J4179_06130 PF14622 Ribonuclease-III-like J4179_06130 PF00035 Double-stranded RNA binding motif J4179_06135 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4179_06145 PF01467 Cytidylyltransferase-like J4179_06155 PF00270 DEAD/DEAH box helicase J4179_06155 PF00271 Helicase conserved C-terminal domain J4179_06155 PF17191 RecG wedge domain J4179_06160 PF00830 Ribosomal L28 family J4179_06170 PF00586 AIR synthase related protein, N-terminal domain J4179_06170 PF02769 AIR synthase related protein, C-terminal domain J4179_06175 PF03358 NADPH-dependent FMN reductase J4179_06180 PF07478 D-ala D-ala ligase C-terminus J4179_06180 PF01820 D-ala D-ala ligase N-terminus J4179_06190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4179_06200 PF03577 Peptidase family C69 J4179_06205 PF00694 Aconitase C-terminal domain J4179_06210 PF00330 Aconitase family (aconitate hydratase) J4179_06220 PF00534 Glycosyl transferases group 1 J4179_06220 PF13439 Glycosyltransferase Family 4 J4179_06235 PF06800 Sugar transport protein J4179_06240 PF01432 Peptidase family M3 J4179_06265 PF00528 Binding-protein-dependent transport system inner membrane component J4179_06270 PF00528 Binding-protein-dependent transport system inner membrane component J4179_06275 PF00356 Bacterial regulatory proteins, lacI family J4179_06290 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4179_06295 PF00155 Aminotransferase class I and II J4179_06300 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4179_06305 PF00501 AMP-binding enzyme J4179_06315 PF00578 AhpC/TSA family J4179_06330 PF01725 Ham1 family J4179_06335 PF03725 3' exoribonuclease family, domain 2 J4179_06335 PF01138 3' exoribonuclease family, domain 1 J4179_06340 PF12706 Beta-lactamase superfamily domain J4179_06345 PF01177 Asp/Glu/Hydantoin racemase J4179_06355 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4179_06360 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4179_06360 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J4179_06365 PF04851 Type III restriction enzyme, res subunit J4179_06375 PF00216 Bacterial DNA-binding protein J4179_06380 PF06826 Predicted Permease Membrane Region J4179_06380 PF02080 TrkA-C domain J4179_06395 PF02540 NAD synthase J4179_06405 PF02872 5'-nucleotidase, C-terminal domain J4179_06405 PF00149 Calcineurin-like phosphoesterase J4179_06425 PF00881 Nitroreductase family J4179_06445 PF02225 PA domain J4179_06445 PF00746 LPXTG cell wall anchor motif J4179_06445 PF06280 Fn3-like domain J4179_06445 PF00082 Subtilase family J4179_06505 PF07687 Peptidase dimerisation domain J4179_06505 PF01546 Peptidase family M20/M25/M40 J4179_06515 PF02581 Thiamine monophosphate synthase J4179_06520 PF02110 Hydroxyethylthiazole kinase family J4179_06525 PF00083 Sugar (and other) transporter J4179_06530 PF08543 Phosphomethylpyrimidine kinase J4179_06530 PF03070 TENA/THI-4/PQQC family J4179_06530 PF02581 Thiamine monophosphate synthase J4179_06540 PF00005 ABC transporter J4179_06540 PF17760 UvrA interaction domain J4179_06540 PF17755 UvrA DNA-binding domain J4179_06560 PF02016 LD-carboxypeptidase N-terminal domain J4179_06560 PF17676 LD-carboxypeptidase C-terminal domain J4179_06565 PF13344 Haloacid dehalogenase-like hydrolase J4179_06570 PF01668 SmpB protein J4179_06575 PF01476 LysM domain J4179_06575 PF08525 Opacity-associated protein A N-terminal motif J4179_06575 PF01551 Peptidase family M23 J4179_06580 PF18075 FtsX extracellular domain J4179_06585 PF00005 ABC transporter J4179_06590 PF00472 RF-1 domain J4179_06590 PF03462 PCRF domain J4179_06625 PF00437 Type II/IV secretion system protein J4179_06650 PF00580 UvrD/REP helicase N-terminal domain J4179_06650 PF13361 UvrD-like helicase C-terminal domain J4179_06650 PF00570 HRDC domain J4179_06665 PF00270 DEAD/DEAH box helicase J4179_06665 PF00271 Helicase conserved C-terminal domain J4179_06670 PF01914 MarC family integral membrane protein J4179_06680 PF00557 Metallopeptidase family M24 J4179_06680 PF05195 Aminopeptidase P, N-terminal domain J4179_06685 PF00571 CBS domain J4179_06685 PF01769 Divalent cation transporter J4179_06685 PF03448 MgtE intracellular N domain J4179_06695 PF01883 Iron-sulfur cluster assembly protein J4179_06695 PF10609 NUBPL iron-transfer P-loop NTPase J4179_06700 PF01596 O-methyltransferase J4179_06710 PF03641 Possible lysine decarboxylase J4179_06715 PF01048 Phosphorylase superfamily J4179_06720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4179_06720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4179_06720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4179_06720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4179_06725 PF01791 DeoC/LacD family aldolase J4179_06735 PF02885 Glycosyl transferase family, helical bundle domain J4179_06735 PF00591 Glycosyl transferase family, a/b domain J4179_06735 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4179_06740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4179_06745 PF02653 Branched-chain amino acid transport system / permease component J4179_06750 PF02653 Branched-chain amino acid transport system / permease component J4179_06755 PF00005 ABC transporter J4179_06760 PF02608 ABC transporter substrate-binding protein PnrA-like J4179_06765 PF00483 Nucleotidyl transferase J4179_06765 PF01050 Mannose-6-phosphate isomerase J4179_06780 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4179_06780 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4179_06785 PF00464 Serine hydroxymethyltransferase J4179_06790 PF00551 Formyl transferase J4179_06795 PF02632 BioY family J4179_06800 PF01648 4'-phosphopantetheinyl transferase superfamily J4179_06805 PF00698 Acyl transferase domain J4179_06810 PF01039 Carboxyl transferase domain J4179_06815 PF02785 Biotin carboxylase C-terminal domain J4179_06815 PF00289 Biotin carboxylase, N-terminal domain J4179_06815 PF00364 Biotin-requiring enzyme J4179_06815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4179_06825 PF13088 BNR repeat-like domain J4179_06825 PF00754 F5/8 type C domain J4179_06825 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase J4179_06835 PF01494 FAD binding domain J4179_06840 PF01012 Electron transfer flavoprotein domain J4179_06840 PF00766 Electron transfer flavoprotein FAD-binding domain J4179_06845 PF01012 Electron transfer flavoprotein domain J4179_06855 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4179_06855 PF00753 Metallo-beta-lactamase superfamily J4179_06860 PF00083 Sugar (and other) transporter J4179_06865 PF01575 MaoC like domain J4179_06870 PF00501 AMP-binding enzyme J4179_06870 PF13193 AMP-binding enzyme C-terminal domain J4179_06875 PF02515 CoA-transferase family III J4179_06880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4179_06880 PF02770 Acyl-CoA dehydrogenase, middle domain J4179_06880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4179_06885 PF07859 alpha/beta hydrolase fold J4179_06895 PF14602 Hexapeptide repeat of succinyl-transferase J4179_06895 PF12464 Maltose acetyltransferase J4179_06905 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4179_06905 PF00056 lactate/malate dehydrogenase, NAD binding domain J4179_06920 PF00342 Phosphoglucose isomerase J4179_06925 PF00365 Phosphofructokinase J4179_06935 PF02142 MGS-like domain J4179_06935 PF01808 AICARFT/IMPCHase bienzyme J4179_06950 PF02629 CoA binding domain J4179_06950 PF00549 CoA-ligase J4179_06955 PF08442 ATP-grasp domain J4179_06955 PF00549 CoA-ligase J4179_06960 PF01757 Acyltransferase family J4179_06965 PF00580 UvrD/REP helicase N-terminal domain J4179_06965 PF13361 UvrD-like helicase C-terminal domain J4179_06970 PF08818 Domain of unknown function (DU1801) J4179_06985 PF00958 GMP synthase C terminal domain J4179_06985 PF02540 NAD synthase J4179_06985 PF00117 Glutamine amidotransferase class-I J4179_06990 PF00849 RNA pseudouridylate synthase J4179_06995 PF01515 Phosphate acetyl/butaryl transferase J4179_06995 PF07085 DRTGG domain J4179_07000 PF00871 Acetokinase family J4179_07015 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain J4179_07015 PF01522 Polysaccharide deacetylase J4179_07025 PF00005 ABC transporter J4179_07040 PF10415 Fumarase C C-terminus J4179_07040 PF00206 Lyase J4179_07045 PF00478 IMP dehydrogenase / GMP reductase domain J4179_07055 PF00571 CBS domain J4179_07055 PF00478 IMP dehydrogenase / GMP reductase domain J4179_07060 PF02467 Transcription factor WhiB J4179_07065 PF02769 AIR synthase related protein, C-terminal domain J4179_07065 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4179_07065 PF00586 AIR synthase related protein, N-terminal domain J4179_07070 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4179_07070 PF02843 Phosphoribosylglycinamide synthetase, C domain J4179_07070 PF02844 Phosphoribosylglycinamide synthetase, N domain J4179_07075 PF00551 Formyl transferase J4179_07080 PF00586 AIR synthase related protein, N-terminal domain J4179_07080 PF02769 AIR synthase related protein, C-terminal domain J4179_07085 PF13537 Glutamine amidotransferase domain J4179_07085 PF00156 Phosphoribosyl transferase domain J4179_07090 PF01259 SAICAR synthetase J4179_07095 PF00731 AIR carboxylase J4179_07115 PF00166 Chaperonin 10 Kd subunit J4179_07125 PF02535 ZIP Zinc transporter J4179_07130 PF00814 Glycoprotease family J4179_07135 PF00209 Sodium:neurotransmitter symporter family J4179_07145 PF13183 4Fe-4S dicluster domain J4179_07145 PF13085 2Fe-2S iron-sulfur cluster binding domain J4179_07150 PF02910 Fumarate reductase flavoprotein C-term J4179_07150 PF00890 FAD binding domain J4179_07165 PF00814 Glycoprotease family J4179_07175 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4179_07180 PF00842 Alanine racemase, C-terminal domain J4179_07180 PF01168 Alanine racemase, N-terminal domain J4179_07185 PF01256 Carbohydrate kinase J4179_07185 PF03853 YjeF-related protein N-terminus J4179_07190 PF01380 SIS domain J4179_07195 PF00485 Phosphoribulokinase / Uridine kinase family J4179_07200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4179_07200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4179_07200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4179_07200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4179_07205 PF00380 Ribosomal protein S9/S16 J4179_07210 PF00572 Ribosomal protein L13 J4179_07220 PF07155 ECF-type riboflavin transporter, S component J4179_07225 PF12558 ATP-binding cassette cobalt transporter J4179_07225 PF00005 ABC transporter J4179_07230 PF02361 Cobalt transport protein J4179_07235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4179_07235 PF03466 LysR substrate binding domain J4179_07245 PF01416 tRNA pseudouridine synthase J4179_07250 PF00480 ROK family J4179_07260 PF00528 Binding-protein-dependent transport system inner membrane component J4179_07265 PF00005 ABC transporter J4179_07270 PF01022 Bacterial regulatory protein, arsR family J4179_07280 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4179_07290 PF07739 TipAS antibiotic-recognition domain J4179_07290 PF13411 MerR HTH family regulatory protein J4179_07295 PF01196 Ribosomal protein L17 J4179_07300 PF01000 RNA polymerase Rpb3/RpoA insert domain J4179_07300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4179_07300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4179_07305 PF00411 Ribosomal protein S11 J4179_07310 PF00416 Ribosomal protein S13/S18 J4179_07315 PF00444 Ribosomal protein L36 J4179_07320 PF01176 Translation initiation factor 1A / IF-1 J4179_07325 PF00557 Metallopeptidase family M24 J4179_07335 PF00344 SecY translocase J4179_07345 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4179_07350 PF00327 Ribosomal protein L30p/L7e J4179_07355 PF03719 Ribosomal protein S5, C-terminal domain J4179_07355 PF00333 Ribosomal protein S5, N-terminal domain J4179_07360 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4179_07365 PF00347 Ribosomal protein L6 J4179_07370 PF00410 Ribosomal protein S8 J4179_07375 PF00253 Ribosomal protein S14p/S29e J4179_07380 PF00281 Ribosomal protein L5 J4179_07380 PF00673 ribosomal L5P family C-terminus J4179_07385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4179_07390 PF00238 Ribosomal protein L14p/L23e J4179_07395 PF00366 Ribosomal protein S17 J4179_07400 PF00831 Ribosomal L29 protein J4179_07405 PF00252 Ribosomal protein L16p/L10e J4179_07410 PF07650 KH domain J4179_07410 PF00189 Ribosomal protein S3, C-terminal domain J4179_07415 PF00237 Ribosomal protein L22p/L17e J4179_07420 PF00203 Ribosomal protein S19 J4179_07425 PF03947 Ribosomal Proteins L2, C-terminal domain J4179_07425 PF00181 Ribosomal Proteins L2, RNA binding domain J4179_07430 PF00276 Ribosomal protein L23 J4179_07435 PF00573 Ribosomal protein L4/L1 family J4179_07440 PF00297 Ribosomal protein L3 J4179_07445 PF00338 Ribosomal protein S10p/S20e J4179_07450 PF13419 Haloacid dehalogenase-like hydrolase J4179_07455 PF00009 Elongation factor Tu GTP binding domain J4179_07455 PF03144 Elongation factor Tu domain 2 J4179_07455 PF03143 Elongation factor Tu C-terminal domain J4179_07460 PF14492 Elongation Factor G, domain II J4179_07460 PF03764 Elongation factor G, domain IV J4179_07460 PF00009 Elongation factor Tu GTP binding domain J4179_07460 PF03144 Elongation factor Tu domain 2 J4179_07460 PF00679 Elongation factor G C-terminus J4179_07465 PF00177 Ribosomal protein S7p/S5e J4179_07470 PF00164 Ribosomal protein S12/S23 J4179_07475 PF00324 Amino acid permease J4179_07480 PF04983 RNA polymerase Rpb1, domain 3 J4179_07480 PF04998 RNA polymerase Rpb1, domain 5 J4179_07480 PF05000 RNA polymerase Rpb1, domain 4 J4179_07480 PF00623 RNA polymerase Rpb1, domain 2 J4179_07480 PF04997 RNA polymerase Rpb1, domain 1 J4179_07485 PF04560 RNA polymerase Rpb2, domain 7 J4179_07485 PF00562 RNA polymerase Rpb2, domain 6 J4179_07485 PF10385 RNA polymerase beta subunit external 1 domain J4179_07485 PF04565 RNA polymerase Rpb2, domain 3 J4179_07485 PF04561 RNA polymerase Rpb2, domain 2 J4179_07485 PF04563 RNA polymerase beta subunit J4179_07490 PF16320 Ribosomal protein L7/L12 dimerisation domain J4179_07490 PF00542 Ribosomal protein L7/L12 C-terminal domain J4179_07495 PF00466 Ribosomal protein L10 J4179_07500 PF00485 Phosphoribulokinase / Uridine kinase family J4179_07505 PF00687 Ribosomal protein L1p/L10e family J4179_07510 PF00298 Ribosomal protein L11, RNA binding domain J4179_07510 PF03946 Ribosomal protein L11, N-terminal domain J4179_07515 PF02357 Transcription termination factor nusG J4179_07520 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4179_07530 PF00155 Aminotransferase class I and II J4179_07540 PF00962 Adenosine/AMP deaminase J4179_07555 PF01565 FAD binding domain J4179_07555 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4179_07560 PF00471 Ribosomal protein L33 J4179_07580 PF04461 Protein of unknown function (DUF520) J4179_07585 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_07590 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus J4179_07590 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4179_07600 PF10647 Lipoprotein LpqB beta-propeller domain J4179_07600 PF10646 Sporulation and spore germination J4179_07605 PF00512 His Kinase A (phospho-acceptor) domain J4179_07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_07605 PF00672 HAMP domain J4179_07610 PF00072 Response regulator receiver domain J4179_07610 PF00486 Transcriptional regulatory protein, C terminal J4179_07630 PF17863 AAA lid domain J4179_07630 PF07726 ATPase family associated with various cellular activities (AAA) J4179_07670 PF02467 Transcription factor WhiB J4179_07675 PF00459 Inositol monophosphatase family J4179_07685 PF01758 Sodium Bile acid symporter family J4179_07690 PF00483 Nucleotidyl transferase J4179_07695 PF04321 RmlD substrate binding domain J4179_07720 PF14524 Wzt C-terminal domain J4179_07720 PF00005 ABC transporter J4179_07730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4179_07730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4179_07730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4179_07745 PF02350 UDP-N-acetylglucosamine 2-epimerase J4179_07780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4179_07780 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4179_07785 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4179_07790 PF00132 Bacterial transferase hexapeptide (six repeats) J4179_07790 PF12804 MobA-like NTP transferase domain J4179_07805 PF16363 GDP-mannose 4,6 dehydratase J4179_07825 PF03816 Cell envelope-related transcriptional attenuator domain J4179_07835 PF08521 Two-component sensor kinase N-terminal J4179_07835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_07835 PF00512 His Kinase A (phospho-acceptor) domain J4179_07840 PF00072 Response regulator receiver domain J4179_07840 PF00486 Transcriptional regulatory protein, C terminal J4179_07845 PF16701 Adenylate cyclase regulatory domain J4179_07845 PF00211 Adenylate and Guanylate cyclase catalytic domain J4179_07855 PF02545 Maf-like protein J4179_07865 PF00285 Citrate synthase, C-terminal domain J4179_07870 PF00155 Aminotransferase class I and II J4179_07875 PF00037 4Fe-4S binding domain J4179_07890 PF03144 Elongation factor Tu domain 2 J4179_07890 PF00009 Elongation factor Tu GTP binding domain J4179_07890 PF00679 Elongation factor G C-terminus J4179_07890 PF14492 Elongation Factor G, domain II J4179_07900 PF00664 ABC transporter transmembrane region J4179_07900 PF00005 ABC transporter J4179_07905 PF00664 ABC transporter transmembrane region J4179_07905 PF00005 ABC transporter J4179_07910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4179_07915 PF00005 ABC transporter J4179_07915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4179_07920 PF00528 Binding-protein-dependent transport system inner membrane component J4179_07920 PF12911 N-terminal TM domain of oligopeptide transport permease C J4179_07925 PF00528 Binding-protein-dependent transport system inner membrane component J4179_07930 PF03099 Biotin/lipoate A/B protein ligase family J4179_07935 PF04055 Radical SAM superfamily J4179_07940 PF00501 AMP-binding enzyme J4179_07940 PF13193 AMP-binding enzyme C-terminal domain J4179_07945 PF02127 Aminopeptidase I zinc metalloprotease (M18) J4179_07960 PF03971 Monomeric isocitrate dehydrogenase J4179_07965 PF04143 Sulphur transport J4179_07970 PF01206 Sulfurtransferase TusA J4179_07990 PF01226 Formate/nitrite transporter J4179_08000 PF02525 Flavodoxin-like fold J4179_08010 PF01327 Polypeptide deformylase J4179_08015 PF01741 Large-conductance mechanosensitive channel, MscL J4179_08035 PF00881 Nitroreductase family J4179_08060 PF13462 Thioredoxin J4179_08060 PF06965 Na+/H+ antiporter 1 J4179_08095 PF12161 HsdM N-terminal domain J4179_08095 PF02384 N-6 DNA Methylase J4179_08100 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J4179_08110 PF01420 Type I restriction modification DNA specificity domain J4179_08125 PF12008 Type I restriction and modification enzyme - subunit R C terminal J4179_08125 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4179_08125 PF18766 SWI2/SNF2 ATPase J4179_08130 PF01381 Helix-turn-helix J4179_08140 PF01926 50S ribosome-binding GTPase J4179_08140 PF06071 Protein of unknown function (DUF933) J4179_08145 PF02646 RmuC family J4179_08150 PF02401 LytB protein J4179_08155 PF02601 Exonuclease VII, large subunit J4179_08155 PF13742 OB-fold nucleic acid binding domain J4179_08160 PF02609 Exonuclease VII small subunit J4179_08165 PF00294 pfkB family carbohydrate kinase J4179_08170 PF01255 Putative undecaprenyl diphosphate synthase J4179_08175 PF03006 Haemolysin-III related J4179_08180 PF03976 Polyphosphate kinase 2 (PPK2) J4179_08190 PF13276 HTH-like domain J4179_08190 PF00665 Integrase core domain J4179_08190 PF13333 Integrase core domain J4179_08195 PF03976 Polyphosphate kinase 2 (PPK2) J4179_08200 PF02585 GlcNAc-PI de-N-acetylase J4179_08205 PF03449 Transcription elongation factor, N-terminal J4179_08205 PF01272 Transcription elongation factor, GreA/GreB, C-term J4179_08210 PF01625 Peptide methionine sulfoxide reductase J4179_08220 PF00474 Sodium:solute symporter family J4179_08225 PF00171 Aldehyde dehydrogenase family J4179_08240 PF00005 ABC transporter J4179_08255 PF00005 ABC transporter J4179_08270 PF06965 Na+/H+ antiporter 1 J4179_08275 PF02541 Ppx/GppA phosphatase family J4179_08295 PF00113 Enolase, C-terminal TIM barrel domain J4179_08295 PF03952 Enolase, N-terminal domain J4179_08300 PF01156 Inosine-uridine preferring nucleoside hydrolase J4179_08305 PF02559 CarD-like/TRCF domain J4179_08305 PF00270 DEAD/DEAH box helicase J4179_08305 PF00271 Helicase conserved C-terminal domain J4179_08305 PF17757 UvrB interaction domain J4179_08305 PF03461 TRCF domain J4179_08310 PF01195 Peptidyl-tRNA hydrolase J4179_08320 PF01386 Ribosomal L25p family J4179_08320 PF14693 Ribosomal protein TL5, C-terminal domain J4179_08325 PF00005 ABC transporter J4179_08330 PF14572 Phosphoribosyl synthetase-associated domain J4179_08330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4179_08335 PF00132 Bacterial transferase hexapeptide (six repeats) J4179_08335 PF12804 MobA-like NTP transferase domain J4179_08350 PF00005 ABC transporter J4179_08350 PF13732 Domain of unknown function (DUF4162) J4179_08365 PF16326 ABC transporter C-terminal domain J4179_08365 PF00005 ABC transporter J4179_08365 PF12848 ABC transporter J4179_08370 PF08544 GHMP kinases C terminal J4179_08370 PF00288 GHMP kinases N terminal domain J4179_08375 PF00398 Ribosomal RNA adenine dimethylase J4179_08385 PF01026 TatD related DNase J4179_08390 PF09334 tRNA synthetases class I (M) J4179_08395 PF08341 Thioester domain J4179_08395 PF17802 Prealbumin-like fold domain J4179_08400 PF00857 Isochorismatase family J4179_08405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4179_08420 PF01053 Cys/Met metabolism PLP-dependent enzyme J4179_08430 PF00005 ABC transporter J4179_08445 PF05175 Methyltransferase small domain J4179_08450 PF00248 Aldo/keto reductase family J4179_08455 PF02028 BCCT, betaine/carnitine/choline family transporter J4179_08460 PF01594 AI-2E family transporter J4179_08470 PF00005 ABC transporter J4179_08475 PF01032 FecCD transport family J4179_08480 PF08768 Domain of unknown function (DUF1794) J4179_08485 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_08485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4179_08505 PF00152 tRNA synthetases class II (D, K and N) J4179_08505 PF16995 Transmembrane region of lysyl-tRNA synthetase J4179_08505 PF01336 OB-fold nucleic acid binding domain J4179_08505 PF09924 Uncharacterised conserved protein (DUF2156) J4179_08510 PF02652 L-lactate permease J4179_08515 PF02754 Cysteine-rich domain J4179_08520 PF02589 LUD domain J4179_08520 PF11870 Domain of unknown function (DUF3390) J4179_08520 PF13183 4Fe-4S dicluster domain J4179_08525 PF02589 LUD domain J4179_08530 PF13936 Helix-turn-helix domain J4179_08530 PF00665 Integrase core domain J4179_08555 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4179_08560 PF00367 phosphotransferase system, EIIB J4179_08560 PF02378 Phosphotransferase system, EIIC J4179_08575 PF00005 ABC transporter J4179_08575 PF13732 Domain of unknown function (DUF4162) J4179_08580 PF00293 NUDIX domain J4179_08590 PF05524 PEP-utilising enzyme, N-terminal J4179_08590 PF00391 PEP-utilising enzyme, mobile domain J4179_08590 PF02896 PEP-utilising enzyme, TIM barrel domain J4179_08605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4179_08605 PF00367 phosphotransferase system, EIIB J4179_08605 PF02378 Phosphotransferase system, EIIC J4179_08625 PF05167 Uncharacterised ACR (DUF711) J4179_08635 PF00444 Ribosomal protein L36 J4179_08640 PF01197 Ribosomal protein L31 J4179_08645 PF00253 Ribosomal protein S14p/S29e J4179_08650 PF00471 Ribosomal protein L33 J4179_08655 PF00830 Ribosomal L28 family J4179_08685 PF00083 Sugar (and other) transporter J4179_08690 PF07859 alpha/beta hydrolase fold J4179_08695 PF00392 Bacterial regulatory proteins, gntR family J4179_08695 PF07702 UTRA domain J4179_08700 PF00005 ABC transporter J4179_08705 PF01032 FecCD transport family J4179_08710 PF01032 FecCD transport family J4179_08715 PF01497 Periplasmic binding protein J4179_08730 PF12697 Alpha/beta hydrolase family J4179_08750 PF01381 Helix-turn-helix J4179_08775 PF03453 MoeA N-terminal region (domain I and II) J4179_08775 PF03454 MoeA C-terminal region (domain IV) J4179_08775 PF00994 Probable molybdopterin binding domain J4179_08805 PF00582 Universal stress protein family J4179_08810 PF00877 NlpC/P60 family J4179_08810 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain J4179_08815 PF01325 Iron dependent repressor, N-terminal DNA binding domain J4179_08815 PF02742 Iron dependent repressor, metal binding and dimerisation domain J4179_08815 PF18357 Diphteria toxin repressor SH3 domain J4179_08820 PF00266 Aminotransferase class-V J4179_08825 PF00860 Permease family J4179_08830 PF01238 Phosphomannose isomerase type I J4179_08835 PF11228 Protein of unknown function (DUF3027) J4179_08840 PF00313 'Cold-shock' DNA-binding domain J4179_08850 PF04012 PspA/IM30 family J4179_08860 PF00072 Response regulator receiver domain J4179_08860 PF00486 Transcriptional regulatory protein, C terminal J4179_08865 PF00512 His Kinase A (phospho-acceptor) domain J4179_08865 PF00672 HAMP domain J4179_08865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_08870 PF00501 AMP-binding enzyme J4179_08870 PF01553 Acyltransferase J4179_08875 PF00106 short chain dehydrogenase J4179_08885 PF00118 TCP-1/cpn60 chaperonin family J4179_08900 PF03167 Uracil DNA glycosylase superfamily J4179_08905 PF02838 Glycosyl hydrolase family 20, domain 2 J4179_08905 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4179_08905 PF03173 Putative carbohydrate binding domain J4179_08905 PF00728 Glycosyl hydrolase family 20, catalytic domain J4179_08910 PF00528 Binding-protein-dependent transport system inner membrane component J4179_08915 PF00528 Binding-protein-dependent transport system inner membrane component J4179_08920 PF01547 Bacterial extracellular solute-binding protein J4179_08935 PF00356 Bacterial regulatory proteins, lacI family J4179_08955 PF00400 WD domain, G-beta repeat J4179_08955 PF00069 Protein kinase domain J4179_08960 PF17912 MalK OB fold domain J4179_08960 PF00005 ABC transporter J4179_08975 PF01547 Bacterial extracellular solute-binding protein J4179_08980 PF00528 Binding-protein-dependent transport system inner membrane component J4179_08985 PF00528 Binding-protein-dependent transport system inner membrane component J4179_09000 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4179_09000 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4179_09005 PF13840 ACT domain J4179_09005 PF01842 ACT domain J4179_09005 PF00696 Amino acid kinase family J4179_09010 PF02132 RecR protein J4179_09010 PF13662 Toprim domain J4179_09015 PF12169 DNA polymerase III subunits gamma and tau domain III J4179_09055 PF00860 Permease family J4179_09070 PF00588 SpoU rRNA Methylase family J4179_09070 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4179_09075 PF09190 DALR domain J4179_09075 PF01406 tRNA synthetases class I (C) catalytic domain J4179_09085 PF00005 ABC transporter J4179_09105 PF02542 YgbB family J4179_09110 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4179_09115 PF02559 CarD-like/TRCF domain J4179_09120 PF00072 Response regulator receiver domain J4179_09120 PF00486 Transcriptional regulatory protein, C terminal J4179_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_09125 PF00512 His Kinase A (phospho-acceptor) domain J4179_09130 PF01895 PhoU domain J4179_09140 PF00300 Histidine phosphatase superfamily (branch 1) J4179_09155 PF16555 Gram-positive pilin subunit D1, N-terminal domain J4179_09155 PF00746 LPXTG cell wall anchor motif J4179_09180 PF02899 Phage integrase, N-terminal SAM-like domain J4179_09180 PF00589 Phage integrase family J4179_09190 PF13614 AAA domain J4179_09205 PF00145 C-5 cytosine-specific DNA methylase J4179_09215 PF02661 Fic/DOC family J4179_09235 PF03432 Relaxase/Mobilisation nuclease domain J4179_09310 PF00561 alpha/beta hydrolase fold J4179_09315 PF12169 DNA polymerase III subunits gamma and tau domain III J4179_09320 PF02223 Thymidylate kinase J4179_09325 PF01131 DNA topoisomerase J4179_09325 PF01751 Toprim domain J4179_09325 PF13368 Topoisomerase C-terminal repeat J4179_09330 PF05175 Methyltransferase small domain J4179_09330 PF17827 PrmC N-terminal domain J4179_09340 PF13443 Cro/C1-type HTH DNA-binding domain J4179_09345 PF00271 Helicase conserved C-terminal domain J4179_09345 PF00270 DEAD/DEAH box helicase J4179_09345 PF09369 Domain of unknown function (DUF1998) J4179_09375 PF00437 Type II/IV secretion system protein J4179_09390 PF00561 alpha/beta hydrolase fold J4179_09395 PF10576 Iron-sulfur binding domain of endonuclease III J4179_09395 PF00633 Helix-hairpin-helix motif J4179_09395 PF00730 HhH-GPD superfamily base excision DNA repair protein J4179_09400 PF00027 Cyclic nucleotide-binding domain J4179_09400 PF13545 Crp-like helix-turn-helix domain J4179_09415 PF02467 Transcription factor WhiB J4179_09420 PF00912 Transglycosylase J4179_09420 PF00905 Penicillin binding protein transpeptidase domain J4179_09435 PF00128 Alpha amylase, catalytic domain J4179_09435 PF02903 Alpha amylase, N-terminal ig-like domain J4179_09450 PF06463 Molybdenum Cofactor Synthesis C J4179_09450 PF04055 Radical SAM superfamily J4179_09455 PF02391 MoaE protein J4179_09460 PF01967 MoaC family J4179_09465 PF03453 MoeA N-terminal region (domain I and II) J4179_09465 PF03454 MoeA C-terminal region (domain IV) J4179_09465 PF00994 Probable molybdopterin binding domain J4179_09470 PF00994 Probable molybdopterin binding domain J4179_09480 PF00528 Binding-protein-dependent transport system inner membrane component J4179_09505 PF00746 LPXTG cell wall anchor motif J4179_09505 PF16555 Gram-positive pilin subunit D1, N-terminal domain J4179_09515 PF00899 ThiF family J4179_09515 PF00581 Rhodanese-like domain J4179_09530 PF08903 Domain of unknown function (DUF1846) J4179_09535 PF05525 Branched-chain amino acid transport protein J4179_09545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4179_09565 PF00535 Glycosyl transferase family 2 J4179_09575 PF00800 Prephenate dehydratase J4179_09575 PF01842 ACT domain J4179_09580 PF00781 Diacylglycerol kinase catalytic domain J4179_09585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4179_09585 PF02403 Seryl-tRNA synthetase N-terminal domain J4179_09615 PF00939 Sodium:sulfate symporter transmembrane region J4179_09640 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain J4179_09640 PF01113 Dihydrodipicolinate reductase, N-terminus J4179_09645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4179_09645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4179_09660 PF18541 RuvC endonuclease subdomain 3 J4179_09660 PF01844 HNH endonuclease J4179_09660 PF17894 Topo homolgy domain in CRISPR-associated endonuclease Cas9 J4179_09660 PF18525 Cas9 C-terminal domain J4179_09660 PF17893 CRISPR-associated endonuclease Cas9 beta-hairpin domain J4179_09660 PF18470 Cas9 alpha-helical lobe domain J4179_09670 PF05958 tRNA (Uracil-5-)-methyltransferase J4179_09685 PF08482 ATP-dependent helicase C-terminal J4179_09685 PF04408 Helicase associated domain (HA2) J4179_09685 PF00270 DEAD/DEAH box helicase J4179_09685 PF00271 Helicase conserved C-terminal domain J4179_09695 PF02080 TrkA-C domain J4179_09695 PF02254 TrkA-N domain J4179_09700 PF02386 Cation transport protein J4179_09715 PF13333 Integrase core domain J4179_09715 PF00665 Integrase core domain J4179_09715 PF13276 HTH-like domain J4179_09730 PF00005 ABC transporter J4179_09730 PF02687 FtsX-like permease family J4179_09730 PF12704 MacB-like periplasmic core domain J4179_09735 PF12704 MacB-like periplasmic core domain J4179_09735 PF00005 ABC transporter J4179_09735 PF02687 FtsX-like permease family J4179_09750 PF00072 Response regulator receiver domain J4179_09750 PF00486 Transcriptional regulatory protein, C terminal J4179_09755 PF00672 HAMP domain J4179_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4179_09755 PF00512 His Kinase A (phospho-acceptor) domain J4179_09760 PF01702 Queuine tRNA-ribosyltransferase J4179_09770 PF01712 Deoxynucleoside kinase J4179_09785 PF13333 Integrase core domain J4179_09785 PF13276 HTH-like domain J4179_09785 PF00665 Integrase core domain J4179_09800 PF00291 Pyridoxal-phosphate dependent enzyme J4179_09800 PF00585 C-terminal regulatory domain of Threonine dehydratase J4179_09815 PF00561 alpha/beta hydrolase fold J4179_09820 PF00248 Aldo/keto reductase family J4179_09825 PF08543 Phosphomethylpyrimidine kinase J4179_09835 PF00754 F5/8 type C domain J4179_09835 PF13088 BNR repeat-like domain J4179_09835 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase J4179_09840 PF00899 ThiF family J4179_09845 PF01026 TatD related DNase J4179_09850 PF07690 Major Facilitator Superfamily J4179_09855 PF00772 DnaB-like helicase N terminal domain J4179_09855 PF03796 DnaB-like helicase C terminal domain J4179_09875 PF03948 Ribosomal protein L9, C-terminal domain J4179_09875 PF01281 Ribosomal protein L9, N-terminal domain J4179_09880 PF01084 Ribosomal protein S18 J4179_09885 PF00436 Single-strand binding protein family J4179_09890 PF01250 Ribosomal protein S6 J4179_09895 PF00912 Transglycosylase J4179_09895 PF00905 Penicillin binding protein transpeptidase domain J4179_09900 PF01594 AI-2E family transporter J4179_09905 PF07690 Major Facilitator Superfamily J4179_09910 PF01743 Poly A polymerase head domain J4179_09910 PF12627 Probable RNA and SrmB- binding site of polymerase A J4179_09910 PF13735 tRNA nucleotidyltransferase domain 2 putative J4179_09915 PF00293 NUDIX domain J4179_09930 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4179_09935 PF00155 Aminotransferase class I and II J4179_09940 PF07478 D-ala D-ala ligase C-terminus J4179_09940 PF01820 D-ala D-ala ligase N-terminus J4179_09945 PF17762 HTH domain found in ParB protein J4179_09945 PF02195 ParB-like nuclease domain J4179_09950 PF13614 AAA domain J4179_09955 PF02527 rRNA small subunit methyltransferase G J4179_09965 PF02096 60Kd inner membrane protein J4179_09970 PF01809 Putative membrane protein insertion efficiency factor J4179_09975 PF00825 Ribonuclease P J4179_09980 PF00468 Ribosomal protein L34