locus-tag class description INS88_00005 PF08299 Bacterial dnaA protein helix-turn-helix INS88_00005 PF00308 Bacterial dnaA protein INS88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain INS88_00010 PF02767 DNA polymerase III beta subunit, central domain INS88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain INS88_00015 PF02463 RecF/RecN/SMC N terminal domain INS88_00020 PF05258 Dna[CI] antecedent, DciA INS88_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_00025 PF01751 Toprim domain INS88_00025 PF00986 DNA gyrase B subunit, carboxyl terminus INS88_00025 PF00204 DNA gyrase B INS88_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A INS88_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller INS88_00035 PF12089 Transmembrane domain of unknown function (DUF3566) INS88_00070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD INS88_00080 PF06781 Cell division protein CrgA INS88_00085 PF04203 Sortase domain INS88_00095 PF00069 Protein kinase domain INS88_00095 PF03793 PASTA domain INS88_00100 PF00905 Penicillin binding protein transpeptidase domain INS88_00105 PF01098 Cell cycle protein INS88_00115 PF16697 Inner membrane component of T3SS, cytoplasmic domain INS88_00120 PF00005 ABC transporter INS88_00120 PF00498 FHA domain INS88_00120 PF01061 ABC-2 type transporter INS88_00135 PF01661 Macro domain INS88_00140 PF00075 RNase H INS88_00150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain INS88_00150 PF00326 Prolyl oligopeptidase family INS88_00155 PF01048 Phosphorylase superfamily INS88_00160 PF02664 S-Ribosylhomocysteinase (LuxS) INS88_00165 PF01475 Ferric uptake regulator family INS88_00175 PF07972 NrdI Flavodoxin like INS88_00180 PF08343 Ribonucleotide reductase N-terminal INS88_00180 PF00317 Ribonucleotide reductase, all-alpha domain INS88_00180 PF02867 Ribonucleotide reductase, barrel domain INS88_00185 PF00762 Ferrochelatase INS88_00190 PF06778 Chlorite dismutase INS88_00195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain INS88_00195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain INS88_00205 PF00268 Ribonucleotide reductase, small chain INS88_00220 PF01850 PIN domain INS88_00225 PF01451 Low molecular weight phosphotyrosine protein phosphatase INS88_00235 PF13416 Bacterial extracellular solute-binding protein INS88_00240 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00245 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00265 PF00271 Helicase conserved C-terminal domain INS88_00265 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold INS88_00265 PF11898 Domain of unknown function (DUF3418) INS88_00265 PF00270 DEAD/DEAH box helicase INS88_00265 PF04408 Helicase associated domain (HA2) INS88_00270 PF00072 Response regulator receiver domain INS88_00270 PF00196 Bacterial regulatory proteins, luxR family INS88_00280 PF00005 ABC transporter INS88_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_00285 PF07730 Histidine kinase INS88_00285 PF05231 MASE1 INS88_00290 PF00196 Bacterial regulatory proteins, luxR family INS88_00290 PF00072 Response regulator receiver domain INS88_00300 PF01263 Aldose 1-epimerase INS88_00305 PF13597 Anaerobic ribonucleoside-triphosphate reductase INS88_00305 PF03477 ATP cone domain INS88_00315 PF01757 Acyltransferase family INS88_00320 PF01614 Bacterial transcriptional regulator INS88_00320 PF09339 IclR helix-turn-helix domain INS88_00325 PF08125 Mannitol dehydrogenase C-terminal domain INS88_00325 PF01232 Mannitol dehydrogenase Rossmann domain INS88_00330 PF03786 D-mannonate dehydratase (UxuA) INS88_00335 PF01081 KDPG and KHG aldolase INS88_00340 PF00294 pfkB family carbohydrate kinase INS88_00345 PF00356 Bacterial regulatory proteins, lacI family INS88_00360 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00365 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00375 PF08544 GHMP kinases C terminal INS88_00375 PF00288 GHMP kinases N terminal domain INS88_00375 PF10509 Galactokinase galactose-binding signature INS88_00390 PF03747 ADP-ribosylglycohydrolase INS88_00400 PF07702 UTRA domain INS88_00400 PF00392 Bacterial regulatory proteins, gntR family INS88_00405 PF00005 ABC transporter INS88_00410 PF02653 Branched-chain amino acid transport system / permease component INS88_00415 PF13407 Periplasmic binding protein domain INS88_00420 PF01467 Cytidylyltransferase-like INS88_00420 PF00294 pfkB family carbohydrate kinase INS88_00425 PF02056 Family 4 glycosyl hydrolase INS88_00425 PF11975 Family 4 glycosyl hydrolase C-terminal domain INS88_00435 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain INS88_00435 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain INS88_00440 PF01636 Phosphotransferase enzyme family INS88_00445 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain INS88_00445 PF17386 Lacto-N-biose phosphorylase C-terminal domain INS88_00445 PF17385 Lacto-N-biose phosphorylase central domain INS88_00450 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00455 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00465 PF00480 ROK family INS88_00470 PF00480 ROK family INS88_00475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_00475 PF00005 ABC transporter INS88_00480 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00480 PF12911 N-terminal TM domain of oligopeptide transport permease C INS88_00485 PF00528 Binding-protein-dependent transport system inner membrane component INS88_00490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_00495 PF00480 ROK family INS88_00510 PF03932 CutC family INS88_00525 PF00171 Aldehyde dehydrogenase family INS88_00530 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_00535 PF00171 Aldehyde dehydrogenase family INS88_00540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INS88_00545 PF00083 Sugar (and other) transporter INS88_00545 PF07690 Major Facilitator Superfamily INS88_00550 PF07729 FCD domain INS88_00550 PF00392 Bacterial regulatory proteins, gntR family INS88_00555 PF01494 FAD binding domain INS88_00555 PF07976 Phenol hydroxylase, C-terminal dimerisation domain INS88_00560 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_00565 PF03328 HpcH/HpaI aldolase/citrate lyase family INS88_00575 PF02614 Glucuronate isomerase INS88_00580 PF03480 Bacterial extracellular solute-binding protein, family 7 INS88_00585 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INS88_00585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INS88_00590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INS88_00600 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INS88_00600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INS88_00610 PF01032 FecCD transport family INS88_00615 PF01032 FecCD transport family INS88_00620 PF00005 ABC transporter INS88_00625 PF00171 Aldehyde dehydrogenase family INS88_00630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_00630 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_00630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_00635 PF04962 KduI/IolB family INS88_00645 PF00294 pfkB family carbohydrate kinase INS88_00655 PF00923 Transaldolase/Fructose-6-phosphate aldolase INS88_00660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INS88_00660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INS88_00665 PF01261 Xylose isomerase-like TIM barrel INS88_00670 PF00083 Sugar (and other) transporter INS88_00675 PF08240 Alcohol dehydrogenase GroES-like domain INS88_00675 PF00107 Zinc-binding dehydrogenase INS88_00680 PF00005 ABC transporter INS88_00685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_00685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_00685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_00685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_00695 PF00403 Heavy-metal-associated domain INS88_00710 PF09335 SNARE associated Golgi protein INS88_00715 PF08328 Adenylosuccinate lyase C-terminal INS88_00715 PF00206 Lyase INS88_00720 PF03881 Fructosamine kinase INS88_00725 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV INS88_00730 PF00155 Aminotransferase class I and II INS88_00745 PF07726 ATPase family associated with various cellular activities (AAA) INS88_00745 PF17863 AAA lid domain INS88_00775 PF01487 Type I 3-dehydroquinase INS88_00785 PF00296 Luciferase-like monooxygenase INS88_00795 PF00248 Aldo/keto reductase family INS88_00800 PF00762 Ferrochelatase INS88_00805 PF01066 CDP-alcohol phosphatidyltransferase INS88_00815 PF00884 Sulfatase INS88_00820 PF00884 Sulfatase INS88_00825 PF16874 Glycosyl hydrolase family 36 C-terminal domain INS88_00825 PF16875 Glycosyl hydrolase family 36 N-terminal domain INS88_00825 PF00485 Phosphoribulokinase / Uridine kinase family INS88_00840 PF01661 Macro domain INS88_00870 PF03354 Phage Terminase INS88_00895 PF00145 C-5 cytosine-specific DNA methylase INS88_00905 PF01555 DNA methylase INS88_00935 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) INS88_00940 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter INS88_00940 PF00361 Proton-conducting membrane transporter INS88_00940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INS88_00940 PF13244 Domain of unknown function (DUF4040) INS88_00945 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INS88_00950 PF00361 Proton-conducting membrane transporter INS88_00985 PF08402 TOBE domain INS88_00985 PF00005 ABC transporter INS88_00990 PF00665 Integrase core domain INS88_00990 PF13276 HTH-like domain INS88_01005 PF07690 Major Facilitator Superfamily INS88_01010 PF07883 Cupin domain INS88_01020 PF00480 ROK family INS88_01025 PF03649 Uncharacterised protein family (UPF0014) INS88_01035 PF00326 Prolyl oligopeptidase family INS88_01035 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain INS88_01045 PF13247 4Fe-4S dicluster domain INS88_01045 PF12800 4Fe-4S binding domain INS88_01050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INS88_01050 PF00384 Molybdopterin oxidoreductase INS88_01050 PF01568 Molydopterin dinucleotide binding domain INS88_01055 PF02583 Metal-sensitive transcriptional repressor INS88_01060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_01060 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_01075 PF00156 Phosphoribosyl transferase domain INS88_01080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INS88_01080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INS88_01085 PF01979 Amidohydrolase family INS88_01090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family INS88_01095 PF00156 Phosphoribosyl transferase domain INS88_01100 PF17191 RecG wedge domain INS88_01100 PF13749 Putative ATP-dependent DNA helicase recG C-terminal INS88_01100 PF00270 DEAD/DEAH box helicase INS88_01110 PF01180 Dihydroorotate dehydrogenase INS88_01115 PF00012 Hsp70 protein INS88_01120 PF01025 GrpE INS88_01125 PF00226 DnaJ domain INS88_01125 PF00684 DnaJ central domain INS88_01125 PF01556 DnaJ C terminal domain INS88_01130 PF13411 MerR HTH family regulatory protein INS88_01135 PF00293 NUDIX domain INS88_01140 PF03009 Glycerophosphoryl diester phosphodiesterase family INS88_01145 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region INS88_01145 PF00326 Prolyl oligopeptidase family INS88_01145 PF07676 WD40-like Beta Propeller Repeat INS88_01160 PF00749 tRNA synthetases class I (E and Q), catalytic domain INS88_01175 PF06827 Zinc finger found in FPG and IleRS INS88_01175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain INS88_01175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain INS88_01180 PF17871 AAA lid domain INS88_01180 PF07724 AAA domain (Cdc48 subfamily) INS88_01180 PF00004 ATPase family associated with various cellular activities (AAA) INS88_01180 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_01180 PF02861 Clp amino terminal domain, pathogenicity island component INS88_01185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_01185 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_01200 PF03372 Endonuclease/Exonuclease/phosphatase family INS88_01220 PF00293 NUDIX domain INS88_01230 PF01384 Phosphate transporter family INS88_01235 PF02146 Sir2 family INS88_01240 PF01116 Fructose-bisphosphate aldolase class-II INS88_01245 PF13936 Helix-turn-helix domain INS88_01245 PF00665 Integrase core domain INS88_01255 PF00709 Adenylosuccinate synthetase INS88_01260 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain INS88_01260 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain INS88_01265 PF01259 SAICAR synthetase INS88_01270 PF00440 Bacterial regulatory proteins, tetR family INS88_01280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain INS88_01280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase INS88_01290 PF00575 S1 RNA binding domain INS88_01290 PF00773 RNB domain INS88_01290 PF17876 Cold shock domain INS88_01315 PF02028 BCCT, betaine/carnitine/choline family transporter INS88_01325 PF17802 Prealbumin-like fold domain INS88_01325 PF05738 Cna protein B-type domain INS88_01325 PF05737 Collagen binding domain INS88_01350 PF00056 lactate/malate dehydrogenase, NAD binding domain INS88_01350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain INS88_01360 PF02388 FemAB family INS88_01365 PF02388 FemAB family INS88_01370 PF02388 FemAB family INS88_01400 PF01641 SelR domain INS88_01425 PF02503 Polyphosphate kinase middle domain INS88_01425 PF17941 Polyphosphate kinase C-terminal domain 1 INS88_01425 PF13090 Polyphosphate kinase C-terminal domain 2 INS88_01425 PF13089 Polyphosphate kinase N-terminal domain INS88_01430 PF00293 NUDIX domain INS88_01430 PF00300 Histidine phosphatase superfamily (branch 1) INS88_01435 PF12849 PBP superfamily domain INS88_01440 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01445 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01450 PF00005 ABC transporter INS88_01455 PF01384 Phosphate transporter family INS88_01465 PF01235 Sodium:alanine symporter family INS88_01475 PF08768 Domain of unknown function (DUF1794) INS88_01495 PF02580 D-Tyr-tRNA(Tyr) deacylase INS88_01500 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_01500 PF02861 Clp amino terminal domain, pathogenicity island component INS88_01500 PF00004 ATPase family associated with various cellular activities (AAA) INS88_01500 PF07724 AAA domain (Cdc48 subfamily) INS88_01500 PF17871 AAA lid domain INS88_01505 PF08240 Alcohol dehydrogenase GroES-like domain INS88_01505 PF00107 Zinc-binding dehydrogenase INS88_01510 PF02447 GntP family permease INS88_01515 PF01232 Mannitol dehydrogenase Rossmann domain INS88_01515 PF08125 Mannitol dehydrogenase C-terminal domain INS88_01525 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INS88_01525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INS88_01530 PF00294 pfkB family carbohydrate kinase INS88_01540 PF07690 Major Facilitator Superfamily INS88_01545 PF04198 Putative sugar-binding domain INS88_01560 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_01560 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_01575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_01575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_01580 PF00596 Class II Aldolase and Adducin N-terminal domain INS88_01585 PF02733 Dak1 domain INS88_01585 PF02734 DAK2 domain INS88_01590 PF00107 Zinc-binding dehydrogenase INS88_01590 PF08240 Alcohol dehydrogenase GroES-like domain INS88_01595 PF02502 Ribose/Galactose Isomerase INS88_01620 PF02371 Transposase IS116/IS110/IS902 family INS88_01620 PF01548 Transposase INS88_01625 PF16355 Domain of unknown function (DUF4982) INS88_01625 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 INS88_01625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_01625 PF00703 Glycosyl hydrolases family 2 INS88_01625 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_01635 PF13649 Methyltransferase domain INS88_01640 PF00005 ABC transporter INS88_01655 PF01925 Sulfite exporter TauE/SafE INS88_01660 PF04055 Radical SAM superfamily INS88_01660 PF13186 Iron-sulfur cluster-binding domain INS88_01665 PF00083 Sugar (and other) transporter INS88_01670 PF00356 Bacterial regulatory proteins, lacI family INS88_01670 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family INS88_01675 PF00884 Sulfatase INS88_01680 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_01690 PF00356 Bacterial regulatory proteins, lacI family INS88_01700 PF02929 Beta galactosidase small chain INS88_01700 PF16353 Domain of unknown function(DUF4981) INS88_01700 PF00703 Glycosyl hydrolases family 2 INS88_01700 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_01700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_01715 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01720 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01730 PF04471 Restriction endonuclease INS88_01730 PF14338 Mrr N-terminal domain INS88_01750 PF01527 Transposase INS88_01755 PF04851 Type III restriction enzyme, res subunit INS88_01760 PF01555 DNA methylase INS88_01810 PF01381 Helix-turn-helix INS88_01820 PF13091 PLD-like domain INS88_01825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain INS88_01825 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_01825 PF00391 PEP-utilising enzyme, mobile domain INS88_01840 PF00128 Alpha amylase, catalytic domain INS88_01845 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01850 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01870 PF17910 FeoB cytosolic helical domain INS88_01870 PF07664 Ferrous iron transport protein B C terminus INS88_01870 PF02421 Ferrous iron transport protein B INS88_01870 PF07670 Nucleoside recognition INS88_01880 PF02913 FAD linked oxidases, C-terminal domain INS88_01880 PF13183 4Fe-4S dicluster domain INS88_01880 PF01565 FAD binding domain INS88_01890 PF12146 Serine aminopeptidase, S33 INS88_01895 PF00561 alpha/beta hydrolase fold INS88_01900 PF00877 NlpC/P60 family INS88_01905 PF00719 Inorganic pyrophosphatase INS88_01910 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family INS88_01920 PF01171 PP-loop family INS88_01920 PF09179 TilS substrate binding domain INS88_01925 PF00156 Phosphoribosyl transferase domain INS88_01930 PF00004 ATPase family associated with various cellular activities (AAA) INS88_01930 PF17862 AAA+ lid domain INS88_01930 PF01434 Peptidase family M41 INS88_01935 PF01227 GTP cyclohydrolase I INS88_01940 PF00809 Pterin binding enzyme INS88_01945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) INS88_01965 PF00356 Bacterial regulatory proteins, lacI family INS88_01970 PF13416 Bacterial extracellular solute-binding protein INS88_01975 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01980 PF00528 Binding-protein-dependent transport system inner membrane component INS88_01985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_01985 PF00703 Glycosyl hydrolases family 2 INS88_01985 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_01985 PF16353 Domain of unknown function(DUF4981) INS88_01985 PF02929 Beta galactosidase small chain INS88_01990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 INS88_01990 PF00391 PEP-utilising enzyme, mobile domain INS88_01990 PF05524 PEP-utilising enzyme, N-terminal INS88_01990 PF00381 PTS HPr component phosphorylation site INS88_01990 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_01995 PF02734 DAK2 domain INS88_02000 PF02733 Dak1 domain INS88_02010 PF02569 Pantoate-beta-alanine ligase INS88_02015 PF02261 Aspartate decarboxylase INS88_02025 PF01336 OB-fold nucleic acid binding domain INS88_02025 PF00152 tRNA synthetases class II (D, K and N) INS88_02030 PF03176 MMPL family INS88_02035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_02035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_02040 PF00230 Major intrinsic protein INS88_02055 PF00005 ABC transporter INS88_02070 PF02754 Cysteine-rich domain INS88_02070 PF13183 4Fe-4S dicluster domain INS88_02075 PF00890 FAD binding domain INS88_02080 PF01266 FAD dependent oxidoreductase INS88_02080 PF04324 BFD-like [2Fe-2S] binding domain INS88_02085 PF04198 Putative sugar-binding domain INS88_02090 PF00583 Acetyltransferase (GNAT) family INS88_02100 PF00633 Helix-hairpin-helix motif INS88_02100 PF10576 Iron-sulfur binding domain of endonuclease III INS88_02100 PF00730 HhH-GPD superfamily base excision DNA repair protein INS88_02110 PF06745 KaiC INS88_02110 PF18073 Rubredoxin metal binding domain INS88_02115 PF02080 TrkA-C domain INS88_02115 PF02254 TrkA-N domain INS88_02120 PF02386 Cation transport protein INS88_02125 PF12728 Helix-turn-helix domain INS88_02140 PF00300 Histidine phosphatase superfamily (branch 1) INS88_02150 PF01040 UbiA prenyltransferase family INS88_02155 PF00501 AMP-binding enzyme INS88_02155 PF13193 AMP-binding enzyme C-terminal domain INS88_02165 PF00528 Binding-protein-dependent transport system inner membrane component INS88_02170 PF00528 Binding-protein-dependent transport system inner membrane component INS88_02175 PF01547 Bacterial extracellular solute-binding protein INS88_02180 PF00378 Enoyl-CoA hydratase/isomerase INS88_02185 PF18374 Enolase N-terminal domain-like INS88_02185 PF13378 Enolase C-terminal domain-like INS88_02190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_02190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_02195 PF13180 PDZ domain INS88_02200 PF00425 chorismate binding enzyme INS88_02205 PF01209 ubiE/COQ5 methyltransferase family INS88_02210 PF01494 FAD binding domain INS88_02215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 INS88_02220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit INS88_02225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit INS88_02230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit INS88_02240 PF10531 SLBB domain INS88_02240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region INS88_02240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit INS88_02245 PF00384 Molybdopterin oxidoreductase INS88_02245 PF01568 Molydopterin dinucleotide binding domain INS88_02245 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region INS88_02250 PF00146 NADH dehydrogenase INS88_02255 PF12838 4Fe-4S dicluster domain INS88_02260 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 INS88_02265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INS88_02270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INS88_02270 PF00361 Proton-conducting membrane transporter INS88_02275 PF00361 Proton-conducting membrane transporter INS88_02280 PF00361 Proton-conducting membrane transporter INS88_02285 PF00348 Polyprenyl synthetase INS88_02290 PF07516 SecA Wing and Scaffold domain INS88_02290 PF01043 SecA preprotein cross-linking domain INS88_02290 PF07517 SecA DEAD-like domain INS88_02330 PF13476 AAA domain INS88_02335 PF00149 Calcineurin-like phosphoesterase INS88_02335 PF12320 Type 5 capsule protein repressor C-terminal domain INS88_02340 PF00459 Inositol monophosphatase family INS88_02345 PF03193 RsgA GTPase INS88_02350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INS88_02360 PF13088 BNR repeat-like domain INS88_02360 PF04650 YSIRK type signal peptide INS88_02360 PF02973 Sialidase, N-terminal domain INS88_02365 PF07859 alpha/beta hydrolase fold INS88_02375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_02380 PF00528 Binding-protein-dependent transport system inner membrane component INS88_02385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_02385 PF00005 ABC transporter INS88_02390 PF00005 ABC transporter INS88_02390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_02395 PF00701 Dihydrodipicolinate synthetase family INS88_02400 PF00480 ROK family INS88_02405 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase INS88_02410 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase INS88_02415 PF01979 Amidohydrolase family INS88_02420 PF04542 Sigma-70 region 2 INS88_02420 PF08281 Sigma-70, region 4 INS88_02430 PF01476 LysM domain INS88_02430 PF08239 Bacterial SH3 domain INS88_02430 PF00877 NlpC/P60 family INS88_02440 PF16870 2-oxoglutarate dehydrogenase C-terminal INS88_02440 PF00676 Dehydrogenase E1 component INS88_02440 PF02779 Transketolase, pyrimidine binding domain INS88_02440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) INS88_02440 PF16078 2-oxoglutarate dehydrogenase N-terminus INS88_02445 PF00571 CBS domain INS88_02445 PF03471 Transporter associated domain INS88_02445 PF01595 Cyclin M transmembrane N-terminal domain INS88_02450 PF01595 Cyclin M transmembrane N-terminal domain INS88_02450 PF00571 CBS domain INS88_02455 PF01551 Peptidase family M23 INS88_02460 PF03009 Glycerophosphoryl diester phosphodiesterase family INS88_02475 PF00005 ABC transporter INS88_02485 PF01548 Transposase INS88_02485 PF02371 Transposase IS116/IS110/IS902 family INS88_02490 PF00665 Integrase core domain INS88_02490 PF13936 Helix-turn-helix domain INS88_02495 PF01527 Transposase INS88_02500 PF00665 Integrase core domain INS88_02500 PF13276 HTH-like domain INS88_02510 PF13276 HTH-like domain INS88_02510 PF13683 Integrase core domain INS88_02535 PF03485 Arginyl tRNA synthetase N terminal domain INS88_02535 PF05746 DALR anticodon binding domain INS88_02535 PF00750 tRNA synthetases class I (R) INS88_02540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain INS88_02540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain INS88_02545 PF01842 ACT domain INS88_02545 PF00742 Homoserine dehydrogenase INS88_02545 PF03447 Homoserine dehydrogenase, NAD binding domain INS88_02550 PF00291 Pyridoxal-phosphate dependent enzyme INS88_02555 PF00288 GHMP kinases N terminal domain INS88_02560 PF07498 Rho termination factor, N-terminal domain INS88_02560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_02560 PF07497 Rho termination factor, RNA-binding domain INS88_02565 PF01197 Ribosomal protein L31 INS88_02570 PF03462 PCRF domain INS88_02570 PF00472 RF-1 domain INS88_02575 PF13649 Methyltransferase domain INS88_02575 PF17827 PrmC N-terminal domain INS88_02580 PF01300 Telomere recombination INS88_02585 PF00953 Glycosyl transferase family 4 INS88_02595 PF00119 ATP synthase A chain INS88_02600 PF00137 ATP synthase subunit C INS88_02605 PF00430 ATP synthase B/B' CF(0) INS88_02610 PF00213 ATP synthase delta (OSCP) subunit INS88_02615 PF02874 ATP synthase alpha/beta family, beta-barrel domain INS88_02615 PF00306 ATP synthase alpha/beta chain, C terminal domain INS88_02615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_02620 PF00231 ATP synthase INS88_02625 PF02874 ATP synthase alpha/beta family, beta-barrel domain INS88_02625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_02630 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain INS88_02630 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain INS88_02640 PF01939 Endonuclease NucS INS88_02675 PF00128 Alpha amylase, catalytic domain INS88_02680 PF00356 Bacterial regulatory proteins, lacI family INS88_02690 PF14785 Maltose transport system permease protein MalF P2 domain INS88_02690 PF00528 Binding-protein-dependent transport system inner membrane component INS88_02695 PF00528 Binding-protein-dependent transport system inner membrane component INS88_02710 PF00128 Alpha amylase, catalytic domain INS88_02710 PF02806 Alpha amylase, C-terminal all-beta domain INS88_02710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_02715 PF18085 Maltokinase N-terminal cap domain INS88_02720 PF16657 Maltogenic Amylase, C-terminal domain INS88_02720 PF00128 Alpha amylase, catalytic domain INS88_02725 PF00128 Alpha amylase, catalytic domain INS88_02725 PF11896 Domain of unknown function (DUF3416) INS88_02735 PF00343 Carbohydrate phosphorylase INS88_02740 PF00579 tRNA synthetases class I (W and Y) INS88_02745 PF00128 Alpha amylase, catalytic domain INS88_02745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_02750 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain INS88_02750 PF09297 NADH pyrophosphatase zinc ribbon domain INS88_02750 PF00293 NUDIX domain INS88_02755 PF00570 HRDC domain INS88_02755 PF00580 UvrD/REP helicase N-terminal domain INS88_02755 PF13361 UvrD-like helicase C-terminal domain INS88_02770 PF05362 Lon protease (S16) C-terminal proteolytic domain INS88_02770 PF13180 PDZ domain INS88_02780 PF03699 Uncharacterised protein family (UPF0182) INS88_02785 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_02785 PF17451 Glycosyl hydrolase 101 beta sandwich domain INS88_02785 PF08305 NPCBM/NEW2 domain INS88_02785 PF17974 Galactose-binding domain-like INS88_02785 PF18080 Galactose mutarotase-like fold domain INS88_02785 PF12905 Endo-alpha-N-acetylgalactosaminidase INS88_02810 PF02371 Transposase IS116/IS110/IS902 family INS88_02810 PF01548 Transposase INS88_02820 PF00392 Bacterial regulatory proteins, gntR family INS88_02825 PF00005 ABC transporter INS88_02835 PF01699 Sodium/calcium exchanger protein INS88_02845 PF00890 FAD binding domain INS88_02845 PF02910 Fumarate reductase flavoprotein C-term INS88_02850 PF13085 2Fe-2S iron-sulfur cluster binding domain INS88_02850 PF13183 4Fe-4S dicluster domain INS88_02865 PF00186 Dihydrofolate reductase INS88_02870 PF00303 Thymidylate synthase INS88_02880 PF12282 Signal transduction histidine kinase INS88_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_02880 PF07568 Histidine kinase INS88_02885 PF00248 Aldo/keto reductase family INS88_02890 PF02467 Transcription factor WhiB INS88_02900 PF09383 NIL domain INS88_02900 PF00005 ABC transporter INS88_02905 PF00196 Bacterial regulatory proteins, luxR family INS88_02905 PF00072 Response regulator receiver domain INS88_02910 PF07730 Histidine kinase INS88_02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_02915 PF02586 SOS response associated peptidase (SRAP) INS88_02920 PF00533 BRCA1 C Terminus (BRCT) domain INS88_02920 PF01653 NAD-dependent DNA ligase adenylation domain INS88_02920 PF03120 NAD-dependent DNA ligase OB-fold domain INS88_02920 PF03119 NAD-dependent DNA ligase C4 zinc finger domain INS88_02920 PF12826 Helix-hairpin-helix motif INS88_02925 PF00082 Subtilase family INS88_02925 PF04151 Bacterial pre-peptidase C-terminal domain INS88_02935 PF13091 PLD-like domain INS88_02935 PF13396 Phospholipase_D-nuclease N-terminal INS88_02940 PF02686 Glu-tRNAGln amidotransferase C subunit INS88_02945 PF01425 Amidase INS88_02950 PF02637 GatB domain INS88_02950 PF02934 GatB/GatE catalytic domain INS88_02955 PF03949 Malic enzyme, NAD binding domain INS88_02955 PF00390 Malic enzyme, N-terminal domain INS88_03005 PF08241 Methyltransferase domain INS88_03010 PF00920 Dehydratase family INS88_03015 PF06826 Predicted Permease Membrane Region INS88_03015 PF02080 TrkA-C domain INS88_03020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_03020 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_03020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_03025 PF10369 Small subunit of acetolactate synthase INS88_03030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain INS88_03030 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain INS88_03035 PF10415 Fumarase C C-terminus INS88_03035 PF00206 Lyase INS88_03050 PF00180 Isocitrate/isopropylmalate dehydrogenase INS88_03055 PF01063 Amino-transferase class IV INS88_03060 PF01228 Glycine radical INS88_03060 PF02901 Pyruvate formate lyase-like INS88_03065 PF02901 Pyruvate formate lyase-like INS88_03065 PF01228 Glycine radical INS88_03070 PF04055 Radical SAM superfamily INS88_03075 PF01168 Alanine racemase, N-terminal domain INS88_03080 PF00271 Helicase conserved C-terminal domain INS88_03080 PF00270 DEAD/DEAH box helicase INS88_03080 PF08148 DSHCT (NUC185) domain INS88_03095 PF12804 MobA-like NTP transferase domain INS88_03100 PF04991 LicD family INS88_03105 PF00535 Glycosyl transferase family 2 INS88_03105 PF01501 Glycosyl transferase family 8 INS88_03120 PF00535 Glycosyl transferase family 2 INS88_03135 PF00535 Glycosyl transferase family 2 INS88_03160 PF00929 Exonuclease INS88_03170 PF03193 RsgA GTPase INS88_03185 PF00005 ABC transporter INS88_03185 PF12848 ABC transporter INS88_03195 PF02446 4-alpha-glucanotransferase INS88_03200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_03200 PF00367 phosphotransferase system, EIIB INS88_03200 PF02378 Phosphotransferase system, EIIC INS88_03205 PF03352 Methyladenine glycosylase INS88_03210 PF01433 Peptidase family M1 domain INS88_03210 PF11838 ERAP1-like C-terminal domain INS88_03220 PF05661 Protein of unknown function (DUF808) INS88_03225 PF01431 Peptidase family M13 INS88_03225 PF05649 Peptidase family M13 INS88_03230 PF02502 Ribose/Galactose Isomerase INS88_03235 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_03240 PF00291 Pyridoxal-phosphate dependent enzyme INS88_03245 PF01205 Uncharacterized protein family UPF0029 INS88_03245 PF09186 Domain of unknown function (DUF1949) INS88_03250 PF01783 Ribosomal L32p protein family INS88_03275 PF01906 Putative heavy-metal-binding INS88_03300 PF00248 Aldo/keto reductase family INS88_03305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INS88_03305 PF05698 Bacterial trigger factor protein (TF) C-terminus INS88_03305 PF05697 Bacterial trigger factor protein (TF) INS88_03310 PF00574 Clp protease INS88_03315 PF00574 Clp protease INS88_03325 PF06689 ClpX C4-type zinc finger INS88_03325 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_03325 PF07724 AAA domain (Cdc48 subfamily) INS88_03330 PF02153 Prephenate dehydrogenase INS88_03330 PF01817 Chorismate mutase type II INS88_03335 PF00501 AMP-binding enzyme INS88_03340 PF00133 tRNA synthetases class I (I, L, M and V) INS88_03340 PF08264 Anticodon-binding domain of tRNA INS88_03350 PF14748 Pyrroline-5-carboxylate reductase dimerisation INS88_03350 PF03807 NADP oxidoreductase coenzyme F420-dependent INS88_03365 PF00133 tRNA synthetases class I (I, L, M and V) INS88_03365 PF08264 Anticodon-binding domain of tRNA INS88_03370 PF02875 Mur ligase family, glutamate ligase domain INS88_03370 PF08245 Mur ligase middle domain INS88_03380 PF00334 Nucleoside diphosphate kinase INS88_03385 PF06470 SMC proteins Flexible Hinge Domain INS88_03385 PF02463 RecF/RecN/SMC N terminal domain INS88_03395 PF03606 C4-dicarboxylate anaerobic carrier INS88_03400 PF01546 Peptidase family M20/M25/M40 INS88_03400 PF07687 Peptidase dimerisation domain INS88_03405 PF02881 SRP54-type protein, helical bundle domain INS88_03405 PF00448 SRP54-type protein, GTPase domain INS88_03410 PF02978 Signal peptide binding domain INS88_03410 PF02881 SRP54-type protein, helical bundle domain INS88_03410 PF00448 SRP54-type protein, GTPase domain INS88_03415 PF01979 Amidohydrolase family INS88_03420 PF16916 Dimerisation domain of Zinc Transporter INS88_03420 PF01545 Cation efflux family INS88_03425 PF00886 Ribosomal protein S16 INS88_03435 PF05239 PRC-barrel domain INS88_03435 PF01782 RimM N-terminal domain INS88_03440 PF01746 tRNA (Guanine-1)-methyltransferase INS88_03445 PF01245 Ribosomal protein L19 INS88_03450 PF10502 Signal peptidase, peptidase S26 INS88_03455 PF01351 Ribonuclease HII INS88_03460 PF10611 Protein of unknown function (DUF2469) INS88_03465 PF02021 Uncharacterised protein family UPF0102 INS88_03470 PF01078 Magnesium chelatase, subunit ChlI INS88_03470 PF13335 Magnesium chelatase, subunit ChlI C-terminal INS88_03475 PF02481 DNA recombination-mediator protein A INS88_03475 PF17782 DprA winged helix domain INS88_03480 PF02899 Phage integrase, N-terminal SAM-like domain INS88_03480 PF00589 Phage integrase family INS88_03490 PF03458 UPF0126 domain INS88_03495 PF00318 Ribosomal protein S2 INS88_03500 PF00889 Elongation factor TS INS88_03505 PF01012 Electron transfer flavoprotein domain INS88_03510 PF00766 Electron transfer flavoprotein FAD-binding domain INS88_03510 PF01012 Electron transfer flavoprotein domain INS88_03515 PF01494 FAD binding domain INS88_03525 PF07690 Major Facilitator Superfamily INS88_03535 PF00696 Amino acid kinase family INS88_03540 PF01765 Ribosome recycling factor INS88_03550 PF04055 Radical SAM superfamily INS88_03560 PF13288 DXP reductoisomerase C-terminal domain INS88_03560 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain INS88_03560 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase INS88_03565 PF17820 PDZ domain INS88_03565 PF02163 Peptidase family M50 INS88_03570 PF04551 GcpE protein INS88_03580 PF03129 Anticodon binding domain INS88_03580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_03580 PF04073 Aminoacyl-tRNA editing domain INS88_03590 PF17384 RimP C-terminal SH3 domain INS88_03590 PF02576 RimP N-terminal domain INS88_03595 PF13184 NusA-like KH domain INS88_03595 PF08529 NusA N-terminal domain INS88_03605 PF00009 Elongation factor Tu GTP binding domain INS88_03605 PF11987 Translation-initiation factor 2 INS88_03605 PF04760 Translation initiation factor IF-2, N-terminal region INS88_03610 PF02033 Ribosome-binding factor A INS88_03615 PF09142 tRNA Pseudouridine synthase II, C terminal INS88_03615 PF16198 tRNA pseudouridylate synthase B C-terminal domain INS88_03615 PF01509 TruB family pseudouridylate synthase (N terminal domain) INS88_03620 PF00672 HAMP domain INS88_03620 PF00989 PAS fold INS88_03620 PF18698 Histidine kinase sensor domain INS88_03620 PF00512 His Kinase A (phospho-acceptor) domain INS88_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_03625 PF00486 Transcriptional regulatory protein, C terminal INS88_03625 PF00072 Response regulator receiver domain INS88_03630 PF07690 Major Facilitator Superfamily INS88_03640 PF08402 TOBE domain INS88_03640 PF00005 ABC transporter INS88_03660 PF06574 FAD synthetase INS88_03660 PF01687 Riboflavin kinase INS88_03670 PF00005 ABC transporter INS88_03705 PF13333 Integrase core domain INS88_03705 PF13276 HTH-like domain INS88_03705 PF01527 Transposase INS88_03705 PF00665 Integrase core domain INS88_03725 PF01527 Transposase INS88_03730 PF00312 Ribosomal protein S15 INS88_03735 PF00013 KH domain INS88_03735 PF01138 3' exoribonuclease family, domain 1 INS88_03735 PF00575 S1 RNA binding domain INS88_03735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain INS88_03745 PF05193 Peptidase M16 inactive domain INS88_03745 PF00675 Insulinase (Peptidase family M16) INS88_03750 PF01113 Dihydrodipicolinate reductase, N-terminus INS88_03750 PF05173 Dihydrodipicolinate reductase, C-terminus INS88_03755 PF00271 Helicase conserved C-terminal domain INS88_03755 PF12419 SNF2 Helicase protein INS88_03755 PF00176 SNF2 family N-terminal domain INS88_03770 PF00701 Dihydrodipicolinate synthetase family INS88_03775 PF17770 Ribonuclease J C-terminal domain INS88_03775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain INS88_03775 PF12706 Beta-lactamase superfamily domain INS88_03780 PF09397 Ftsk gamma domain INS88_03780 PF01580 FtsK/SpoIIIE family INS88_03780 PF17854 FtsK alpha domain INS88_03790 PF01066 CDP-alcohol phosphatidyltransferase INS88_03795 PF00994 Probable molybdopterin binding domain INS88_03795 PF02464 Competence-damaged protein INS88_03795 PF18146 Damage-inducible protein CinA KH domain INS88_03810 PF00154 recA bacterial DNA recombination protein INS88_03815 PF02631 RecX family INS88_03820 PF00919 Uncharacterized protein family UPF0004 INS88_03820 PF04055 Radical SAM superfamily INS88_03830 PF05175 Methyltransferase small domain INS88_03835 PF13167 GTP-binding GTPase N-terminal INS88_03835 PF16360 GTP-binding GTPase Middle Region INS88_03835 PF01926 50S ribosome-binding GTPase INS88_03840 PF13307 Helicase C-terminal domain INS88_03845 PF00717 Peptidase S24-like INS88_03845 PF01726 LexA DNA binding domain INS88_03855 PF03477 ATP cone domain INS88_03860 PF13193 AMP-binding enzyme C-terminal domain INS88_03860 PF00501 AMP-binding enzyme INS88_03865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INS88_03865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INS88_03890 PF00817 impB/mucB/samB family INS88_03890 PF11799 impB/mucB/samB family C-terminal domain INS88_03900 PF02381 MraZ protein, putative antitoxin-like INS88_03905 PF01795 MraW methylase family INS88_03915 PF03717 Penicillin-binding Protein dimerisation domain INS88_03915 PF00905 Penicillin binding protein transpeptidase domain INS88_03920 PF01225 Mur ligase family, catalytic domain INS88_03920 PF08245 Mur ligase middle domain INS88_03920 PF02875 Mur ligase family, glutamate ligase domain INS88_03925 PF02875 Mur ligase family, glutamate ligase domain INS88_03925 PF08245 Mur ligase middle domain INS88_03925 PF01225 Mur ligase family, catalytic domain INS88_03930 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 INS88_03930 PF00953 Glycosyl transferase family 4 INS88_03935 PF08245 Mur ligase middle domain INS88_03935 PF02875 Mur ligase family, glutamate ligase domain INS88_03940 PF01098 Cell cycle protein INS88_03945 PF03033 Glycosyltransferase family 28 N-terminal domain INS88_03945 PF04101 Glycosyltransferase family 28 C-terminal domain INS88_03950 PF08245 Mur ligase middle domain INS88_03950 PF01225 Mur ligase family, catalytic domain INS88_03950 PF02875 Mur ligase family, glutamate ligase domain INS88_03960 PF12327 FtsZ family, C-terminal domain INS88_03960 PF00091 Tubulin/FtsZ family, GTPase domain INS88_03965 PF02578 Multi-copper polyphenol oxidoreductase laccase INS88_03970 PF04472 Cell division protein SepF INS88_03985 PF01252 Signal peptidase (SPase) II INS88_03990 PF00849 RNA pseudouridylate synthase INS88_03995 PF13673 Acetyltransferase (GNAT) domain INS88_04000 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_04000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_04000 PF14579 Helix-hairpin-helix motif INS88_04000 PF02811 PHP domain INS88_04015 PF01475 Ferric uptake regulator family INS88_04020 PF00950 ABC 3 transport family INS88_04025 PF00005 ABC transporter INS88_04035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_04035 PF03129 Anticodon binding domain INS88_04045 PF01207 Dihydrouridine synthase (Dus) INS88_04055 PF13286 Phosphohydrolase-associated domain INS88_04055 PF01966 HD domain INS88_04060 PF10410 DnaB-helicase binding domain of primase INS88_04060 PF13662 Toprim domain INS88_04060 PF08278 DNA primase DnaG DnaB-binding INS88_04060 PF08275 DNA primase catalytic core, N-terminal domain INS88_04060 PF01807 CHC2 zinc finger INS88_04070 PF00902 Sec-independent protein translocase protein (TatC) INS88_04075 PF02416 mttA/Hcf106 family INS88_04080 PF02416 mttA/Hcf106 family INS88_04110 PF01032 FecCD transport family INS88_04115 PF00005 ABC transporter INS88_04155 PF01327 Polypeptide deformylase INS88_04160 PF01370 NAD dependent epimerase/dehydratase family INS88_04160 PF08338 Domain of unknown function (DUF1731) INS88_04180 PF01300 Telomere recombination INS88_04185 PF13419 Haloacid dehalogenase-like hydrolase INS88_04195 PF00005 ABC transporter INS88_04195 PF00664 ABC transporter transmembrane region INS88_04200 PF00664 ABC transporter transmembrane region INS88_04200 PF00005 ABC transporter INS88_04205 PF07690 Major Facilitator Superfamily INS88_04210 PF17831 Pyruvate dehydrogenase E1 component middle domain INS88_04210 PF00456 Transketolase, thiamine diphosphate binding domain INS88_04235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) INS88_04240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) INS88_04245 PF01784 NIF3 (NGG1p interacting factor 3) INS88_04265 PF00480 ROK family INS88_04270 PF00557 Metallopeptidase family M24 INS88_04280 PF03951 Glutamine synthetase, beta-Grasp domain INS88_04280 PF00120 Glutamine synthetase, catalytic domain INS88_04285 PF08335 GlnD PII-uridylyltransferase INS88_04285 PF03710 Glutamate-ammonia ligase adenylyltransferase INS88_04315 PF00120 Glutamine synthetase, catalytic domain INS88_04315 PF03951 Glutamine synthetase, beta-Grasp domain INS88_04335 PF02817 e3 binding domain INS88_04335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) INS88_04335 PF00364 Biotin-requiring enzyme INS88_04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_04340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_04350 PF00883 Cytosol aminopeptidase family, catalytic domain INS88_04350 PF02789 Cytosol aminopeptidase family, N-terminal domain INS88_04365 PF07687 Peptidase dimerisation domain INS88_04365 PF01546 Peptidase family M20/M25/M40 INS88_04375 PF01521 Iron-sulphur cluster biosynthesis INS88_04385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain INS88_04385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain INS88_04405 PF00929 Exonuclease INS88_04405 PF01541 GIY-YIG catalytic domain INS88_04415 PF00365 Phosphofructokinase INS88_04420 PF01474 Class-II DAHP synthetase family INS88_04425 PF00069 Protein kinase domain INS88_04425 PF03793 PASTA domain INS88_04430 PF01464 Transglycosylase SLT domain INS88_04430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain INS88_04440 PF00348 Polyprenyl synthetase INS88_04455 PF04539 Sigma-70 region 3 INS88_04455 PF04542 Sigma-70 region 2 INS88_04455 PF04545 Sigma-70, region 4 INS88_04455 PF00140 Sigma-70 factor, region 1.2 INS88_04460 PF01336 OB-fold nucleic acid binding domain INS88_04460 PF02811 PHP domain INS88_04460 PF14579 Helix-hairpin-helix motif INS88_04460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_04460 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_04460 PF11490 DNA polymerase III polC-type N-terminus II INS88_04460 PF00929 Exonuclease INS88_04470 PF01751 Toprim domain INS88_04470 PF00986 DNA gyrase B subunit, carboxyl terminus INS88_04470 PF00204 DNA gyrase B INS88_04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_04485 PF00521 DNA gyrase/topoisomerase IV, subunit A INS88_04485 PF03989 DNA gyrase C-terminal domain, beta-propeller INS88_04525 PF02080 TrkA-C domain INS88_04525 PF02254 TrkA-N domain INS88_04530 PF02080 TrkA-C domain INS88_04530 PF02254 TrkA-N domain INS88_04540 PF05958 tRNA (Uracil-5-)-methyltransferase INS88_04545 PF00694 Aconitase C-terminal domain INS88_04545 PF00330 Aconitase family (aconitate hydratase) INS88_04550 PF00665 Integrase core domain INS88_04550 PF13936 Helix-turn-helix domain INS88_04555 PF02780 Transketolase, C-terminal domain INS88_04555 PF02779 Transketolase, pyrimidine binding domain INS88_04555 PF13292 1-deoxy-D-xylulose-5-phosphate synthase INS88_04560 PF00570 HRDC domain INS88_04560 PF01612 3'-5' exonuclease INS88_04570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_04570 PF00128 Alpha amylase, catalytic domain INS88_04575 PF00128 Alpha amylase, catalytic domain INS88_04580 PF00128 Alpha amylase, catalytic domain INS88_04580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_04620 PF00196 Bacterial regulatory proteins, luxR family INS88_04620 PF00072 Response regulator receiver domain INS88_04625 PF03315 Serine dehydratase beta chain INS88_04625 PF03313 Serine dehydratase alpha chain INS88_04630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INS88_04630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_04630 PF03129 Anticodon binding domain INS88_04635 PF01066 CDP-alcohol phosphatidyltransferase INS88_04645 PF13439 Glycosyltransferase Family 4 INS88_04660 PF00293 NUDIX domain INS88_04660 PF03099 Biotin/lipoate A/B protein ligase family INS88_04665 PF01709 Transcriptional regulator INS88_04670 PF02075 Crossover junction endodeoxyribonuclease RuvC INS88_04675 PF01330 RuvA N terminal domain INS88_04675 PF07499 RuvA, C-terminal domain INS88_04680 PF05496 Holliday junction DNA helicase RuvB P-loop domain INS88_04680 PF17864 RuvB AAA lid domain INS88_04680 PF05491 RuvB C-terminal winged helix domain INS88_04690 PF07549 SecD/SecF GG Motif INS88_04690 PF02355 Protein export membrane protein INS88_04695 PF07549 SecD/SecF GG Motif INS88_04695 PF02355 Protein export membrane protein INS88_04700 PF00156 Phosphoribosyl transferase domain INS88_04705 PF02824 TGS domain INS88_04705 PF04607 Region found in RelA / SpoT proteins INS88_04705 PF13291 ACT domain INS88_04715 PF03993 Domain of Unknown Function (DUF349) INS88_04720 PF00753 Metallo-beta-lactamase superfamily INS88_04725 PF13393 Histidyl-tRNA synthetase INS88_04725 PF03129 Anticodon binding domain INS88_04730 PF07650 KH domain INS88_04730 PF01926 50S ribosome-binding GTPase INS88_04735 PF10396 GTP-binding protein TrmE N-terminus INS88_04735 PF01926 50S ribosome-binding GTPase INS88_04735 PF12631 MnmE helical domain INS88_04745 PF03880 DbpA RNA binding domain INS88_04745 PF00270 DEAD/DEAH box helicase INS88_04745 PF00271 Helicase conserved C-terminal domain INS88_04750 PF07690 Major Facilitator Superfamily INS88_04755 PF01336 OB-fold nucleic acid binding domain INS88_04755 PF02938 GAD domain INS88_04755 PF00152 tRNA synthetases class II (D, K and N) INS88_04770 PF03176 MMPL family INS88_04775 PF00004 ATPase family associated with various cellular activities (AAA) INS88_04775 PF12002 MgsA AAA+ ATPase C terminal INS88_04775 PF16193 AAA C-terminal domain INS88_04780 PF00163 Ribosomal protein S4/S9 N-terminal domain INS88_04780 PF01479 S4 domain INS88_04790 PF01411 tRNA synthetases class II (A) INS88_04790 PF02272 DHHA1 domain INS88_04790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INS88_04795 PF03652 Holliday junction resolvase INS88_04815 PF01264 Chorismate synthase INS88_04820 PF01202 Shikimate kinase INS88_04820 PF01761 3-dehydroquinate synthase INS88_04835 PF01132 Elongation factor P (EF-P) OB domain INS88_04835 PF08207 Elongation factor P (EF-P) KOW-like domain INS88_04835 PF09285 Elongation factor P, C-terminal INS88_04840 PF01029 NusB family INS88_04845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain INS88_04845 PF00117 Glutamine amidotransferase class-I INS88_04850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INS88_04850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain INS88_04850 PF02142 MGS-like domain INS88_04860 PF00625 Guanylate kinase INS88_04865 PF01192 RNA polymerase Rpb6 INS88_04870 PF04127 DNA / pantothenate metabolism flavoprotein INS88_04870 PF02441 Flavoprotein INS88_04875 PF02772 S-adenosylmethionine synthetase, central domain INS88_04875 PF02773 S-adenosylmethionine synthetase, C-terminal domain INS88_04875 PF00438 S-adenosylmethionine synthetase, N-terminal domain INS88_04880 PF17764 3′ DNA-binding domain (3′BD) INS88_04885 PF00551 Formyl transferase INS88_04885 PF02911 Formyl transferase, C-terminal domain INS88_04890 PF01029 NusB family INS88_04890 PF01189 16S rRNA methyltransferase RsmB/F INS88_04895 PF00834 Ribulose-phosphate 3 epimerase family INS88_04900 PF00528 Binding-protein-dependent transport system inner membrane component INS88_04905 PF09084 NMT1/THI5 like INS88_04910 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase INS88_04915 PF08029 HisG, C-terminal domain INS88_04915 PF01634 ATP phosphoribosyltransferase INS88_04940 PF00781 Diacylglycerol kinase catalytic domain INS88_04945 PF00271 Helicase conserved C-terminal domain INS88_04945 PF00270 DEAD/DEAH box helicase INS88_04945 PF08148 DSHCT (NUC185) domain INS88_04950 PF00795 Carbon-nitrogen hydrolase INS88_04955 PF00535 Glycosyl transferase family 2 INS88_04960 PF13397 RNA polymerase-binding protein INS88_04970 PF13411 MerR HTH family regulatory protein INS88_04980 PF16697 Inner membrane component of T3SS, cytoplasmic domain INS88_04985 PF01433 Peptidase family M1 domain INS88_04985 PF11838 ERAP1-like C-terminal domain INS88_05000 PF00365 Phosphofructokinase INS88_05005 PF01926 50S ribosome-binding GTPase INS88_05005 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal INS88_05010 PF02224 Cytidylate kinase INS88_05015 PF01479 S4 domain INS88_05015 PF00849 RNA pseudouridylate synthase INS88_05020 PF04079 Segregation and condensation complex subunit ScpB INS88_05025 PF02616 Segregation and condensation protein ScpA INS88_05030 PF13614 AAA domain INS88_05035 PF02899 Phage integrase, N-terminal SAM-like domain INS88_05035 PF00589 Phage integrase family INS88_05040 PF00456 Transketolase, thiamine diphosphate binding domain INS88_05040 PF02780 Transketolase, C-terminal domain INS88_05040 PF02779 Transketolase, pyrimidine binding domain INS88_05045 PF00923 Transaldolase/Fructose-6-phosphate aldolase INS88_05050 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain INS88_05050 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain INS88_05060 PF03840 Preprotein translocase SecG subunit INS88_05065 PF00121 Triosephosphate isomerase INS88_05070 PF00162 Phosphoglycerate kinase INS88_05075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain INS88_05075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain INS88_05080 PF02650 WhiA C-terminal HTH domain INS88_05080 PF10298 WhiA N-terminal LAGLIDADG-like domain INS88_05080 PF14527 WhiA LAGLIDADG-like domain INS88_05085 PF01933 Uncharacterised protein family UPF0052 INS88_05090 PF03668 P-loop ATPase protein family INS88_05095 PF01541 GIY-YIG catalytic domain INS88_05095 PF08459 UvrC Helix-hairpin-helix N-terminal INS88_05095 PF02151 UvrB/uvrC motif INS88_05100 PF17760 UvrA interaction domain INS88_05100 PF17755 UvrA DNA-binding domain INS88_05100 PF00005 ABC transporter INS88_05110 PF13593 SBF-like CPA transporter family (DUF4137) INS88_05115 PF03741 Integral membrane protein TerC family INS88_05120 PF17757 UvrB interaction domain INS88_05120 PF04851 Type III restriction enzyme, res subunit INS88_05120 PF00271 Helicase conserved C-terminal domain INS88_05120 PF02151 UvrB/uvrC motif INS88_05120 PF12344 Ultra-violet resistance protein B INS88_05125 PF01121 Dephospho-CoA kinase INS88_05130 PF01470 Pyroglutamyl peptidase INS88_05135 PF00575 S1 RNA binding domain INS88_05140 PF08241 Methyltransferase domain INS88_05145 PF00476 DNA polymerase family A INS88_05145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain INS88_05145 PF01367 5'-3' exonuclease, C-terminal SAM fold INS88_05155 PF03861 ANTAR domain INS88_05155 PF00072 Response regulator receiver domain INS88_05165 PF02887 Pyruvate kinase, alpha/beta domain INS88_05165 PF00224 Pyruvate kinase, barrel domain INS88_05170 PF01790 Prolipoprotein diacylglyceryl transferase INS88_05175 PF00290 Tryptophan synthase alpha chain INS88_05180 PF00291 Pyridoxal-phosphate dependent enzyme INS88_05185 PF00218 Indole-3-glycerol phosphate synthase INS88_05190 PF01502 Phosphoribosyl-AMP cyclohydrolase INS88_05195 PF00977 Histidine biosynthesis protein INS88_05210 PF03136 Pup-ligase protein INS88_05215 PF05639 Pup-like protein INS88_05220 PF03136 Pup-ligase protein INS88_05225 PF16450 Proteasomal ATPase OB C-terminal domain INS88_05225 PF00004 ATPase family associated with various cellular activities (AAA) INS88_05225 PF17758 Proteasomal ATPase OB N-terminal domain INS88_05230 PF08704 tRNA methyltransferase complex GCD14 subunit INS88_05240 PF13419 Haloacid dehalogenase-like hydrolase INS88_05245 PF02673 Bacitracin resistance protein BacA INS88_05260 PF07687 Peptidase dimerisation domain INS88_05260 PF01546 Peptidase family M20/M25/M40 INS88_05265 PF04107 Glutamate-cysteine ligase family 2(GCS2) INS88_05270 PF00117 Glutamine amidotransferase class-I INS88_05270 PF00958 GMP synthase C terminal domain INS88_05275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INS88_05275 PF08501 Shikimate dehydrogenase substrate binding domain INS88_05275 PF01488 Shikimate / quinate 5-dehydrogenase INS88_05295 PF01336 OB-fold nucleic acid binding domain INS88_05295 PF02811 PHP domain INS88_05295 PF14579 Helix-hairpin-helix motif INS88_05295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_05295 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_05310 PF01161 Phosphatidylethanolamine-binding protein INS88_05315 PF00588 SpoU rRNA Methylase family INS88_05330 PF00588 SpoU rRNA Methylase family INS88_05335 PF01145 SPFH domain / Band 7 family INS88_05345 PF00005 ABC transporter INS88_05350 PF00534 Glycosyl transferases group 1 INS88_05350 PF13439 Glycosyltransferase Family 4 INS88_05355 PF00483 Nucleotidyl transferase INS88_05375 PF00005 ABC transporter INS88_05375 PF12848 ABC transporter INS88_05380 PF04228 Putative neutral zinc metallopeptidase INS88_05385 PF00581 Rhodanese-like domain INS88_05390 PF01883 Iron-sulfur cluster assembly protein INS88_05400 PF00266 Aminotransferase class-V INS88_05405 PF00005 ABC transporter INS88_05410 PF00355 Rieske [2Fe-2S] domain INS88_05415 PF01458 Uncharacterized protein family (UPF0051) INS88_05420 PF01458 Uncharacterized protein family (UPF0051) INS88_05435 PF03023 Lipid II flippase MurJ INS88_05455 PF02463 RecF/RecN/SMC N terminal domain INS88_05460 PF01513 ATP-NAD kinase INS88_05465 PF01479 S4 domain INS88_05465 PF01728 FtsJ-like methyltransferase INS88_05475 PF18407 GCN5-related N-acetyltransferase like domain INS88_05475 PF13344 Haloacid dehalogenase-like hydrolase INS88_05500 PF00950 ABC 3 transport family INS88_05505 PF00950 ABC 3 transport family INS88_05510 PF00005 ABC transporter INS88_05520 PF00579 tRNA synthetases class I (W and Y) INS88_05525 PF00005 ABC transporter INS88_05535 PF01381 Helix-turn-helix INS88_05540 PF14698 Argininosuccinate lyase C-terminal INS88_05540 PF00206 Lyase INS88_05545 PF16363 GDP-mannose 4,6 dehydratase INS88_05550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INS88_05550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INS88_05560 PF00764 Arginosuccinate synthase INS88_05565 PF01316 Arginine repressor, DNA binding domain INS88_05565 PF02863 Arginine repressor, C-terminal domain INS88_05570 PF00202 Aminotransferase class-III INS88_05575 PF00696 Amino acid kinase family INS88_05580 PF01960 ArgJ family INS88_05585 PF02774 Semialdehyde dehydrogenase, dimerisation domain INS88_05585 PF01118 Semialdehyde dehydrogenase, NAD binding domain INS88_05595 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus INS88_05595 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus INS88_05600 PF04073 Aminoacyl-tRNA editing domain INS88_05605 PF03483 B3/4 domain INS88_05605 PF03147 Ferredoxin-fold anticodon binding domain INS88_05605 PF03484 tRNA synthetase B5 domain INS88_05605 PF01588 Putative tRNA binding domain INS88_05605 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain INS88_05610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain INS88_05610 PF01409 tRNA synthetases class II core domain (F) INS88_05620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INS88_05625 PF00588 SpoU rRNA Methylase family INS88_05625 PF08032 RNA 2'-O ribose methyltransferase substrate binding INS88_05635 PF00453 Ribosomal protein L20 INS88_05640 PF01632 Ribosomal protein L35 INS88_05645 PF00707 Translation initiation factor IF-3, C-terminal domain INS88_05645 PF05198 Translation initiation factor IF-3, N-terminal domain INS88_05655 PF00977 Histidine biosynthesis protein INS88_05660 PF00117 Glutamine amidotransferase class-I INS88_05670 PF00475 Imidazoleglycerol-phosphate dehydratase INS88_05675 PF00155 Aminotransferase class I and II INS88_05680 PF00815 Histidinol dehydrogenase INS88_05685 PF01255 Putative undecaprenyl diphosphate synthase INS88_05690 PF02565 Recombination protein O C terminal INS88_05690 PF11967 Recombination protein O N terminal INS88_05695 PF08502 LeuA allosteric (dimerisation) domain INS88_05695 PF00682 HMGL-like INS88_05700 PF00069 Protein kinase domain INS88_05700 PF13191 AAA ATPase domain INS88_05720 PF01926 50S ribosome-binding GTPase INS88_05720 PF07650 KH domain INS88_05725 PF01595 Cyclin M transmembrane N-terminal domain INS88_05725 PF03471 Transporter associated domain INS88_05725 PF00571 CBS domain INS88_05730 PF02130 Uncharacterized protein family UPF0054 INS88_05735 PF02562 PhoH-like protein INS88_05740 PF04452 RNA methyltransferase INS88_05745 PF00226 DnaJ domain INS88_05745 PF00684 DnaJ central domain INS88_05745 PF01556 DnaJ C terminal domain INS88_05750 PF01628 HrcA protein C terminal domain INS88_05750 PF08220 DeoR-like helix-turn-helix domain INS88_05765 PF04055 Radical SAM superfamily INS88_05770 PF02390 Putative methyltransferase INS88_05775 PF00009 Elongation factor Tu GTP binding domain INS88_05775 PF06421 GTP-binding protein LepA C-terminus INS88_05775 PF00679 Elongation factor G C-terminus INS88_05795 PF05532 CsbD-like INS88_05800 PF01649 Ribosomal protein S20 INS88_05805 PF02233 NAD(P) transhydrogenase beta subunit INS88_05810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain INS88_05810 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch INS88_05810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain INS88_05820 PF03772 Competence protein INS88_05820 PF00753 Metallo-beta-lactamase superfamily INS88_05825 PF10531 SLBB domain INS88_05830 PF05872 Bacterial protein of unknown function (DUF853) INS88_05840 PF08264 Anticodon-binding domain of tRNA INS88_05840 PF09334 tRNA synthetases class I (M) INS88_05840 PF13603 Leucyl-tRNA synthetase, Domain 2 INS88_05845 PF01230 HIT domain INS88_05860 PF01594 AI-2E family transporter INS88_05865 PF01048 Phosphorylase superfamily INS88_05870 PF00950 ABC 3 transport family INS88_05870 PF02742 Iron dependent repressor, metal binding and dimerisation domain INS88_05875 PF00265 Thymidine kinase INS88_05885 PF01022 Bacterial regulatory protein, arsR family INS88_05895 PF01297 Zinc-uptake complex component A periplasmic INS88_05895 PF01297 Zinc-uptake complex component A periplasmic INS88_05905 PF00005 ABC transporter INS88_05910 PF00950 ABC 3 transport family INS88_05915 PF00294 pfkB family carbohydrate kinase INS88_05930 PF01569 PAP2 superfamily INS88_05950 PF00324 Amino acid permease INS88_05960 PF05681 Fumarate hydratase (Fumerase) INS88_05960 PF05683 Fumarase C-terminus INS88_05965 PF13936 Helix-turn-helix domain INS88_05965 PF00665 Integrase core domain INS88_05970 PF00005 ABC transporter INS88_05970 PF09383 NIL domain INS88_05975 PF00528 Binding-protein-dependent transport system inner membrane component INS88_05980 PF03180 NLPA lipoprotein INS88_05985 PF00324 Amino acid permease INS88_05995 PF03591 AzlC protein INS88_06000 PF01136 Peptidase family U32 INS88_06000 PF16325 Peptidase family U32 C-terminal domain INS88_06005 PF01174 SNO glutamine amidotransferase family INS88_06010 PF01680 SOR/SNZ family INS88_06015 PF00392 Bacterial regulatory proteins, gntR family INS88_06025 PF01910 Thiamine-binding protein INS88_06040 PF00356 Bacterial regulatory proteins, lacI family INS88_06045 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_06045 PF00703 Glycosyl hydrolases family 2 INS88_06045 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_06055 PF00933 Glycosyl hydrolase family 3 N terminal domain INS88_06070 PF01522 Polysaccharide deacetylase INS88_06075 PF00291 Pyridoxal-phosphate dependent enzyme INS88_06110 PF13276 HTH-like domain INS88_06110 PF13333 Integrase core domain INS88_06110 PF00665 Integrase core domain INS88_06120 PF13333 Integrase core domain INS88_06120 PF00665 Integrase core domain INS88_06120 PF01527 Transposase INS88_06120 PF13276 HTH-like domain INS88_06145 PF00005 ABC transporter INS88_06160 PF02796 Helix-turn-helix domain of resolvase INS88_06160 PF00239 Resolvase, N terminal domain INS88_06175 PF00300 Histidine phosphatase superfamily (branch 1) INS88_06190 PF01467 Cytidylyltransferase-like INS88_06195 PF00085 Thioredoxin INS88_06205 PF01018 GTP1/OBG INS88_06205 PF09269 Domain of unknown function (DUF1967) INS88_06205 PF01926 50S ribosome-binding GTPase INS88_06210 PF01016 Ribosomal L27 protein INS88_06215 PF00829 Ribosomal prokaryotic L21 protein INS88_06220 PF10150 Ribonuclease E/G family INS88_06225 PF01654 Cytochrome bd terminal oxidase subunit I INS88_06230 PF02322 Cytochrome bd terminal oxidase subunit II INS88_06235 PF00005 ABC transporter INS88_06235 PF00664 ABC transporter transmembrane region INS88_06240 PF00005 ABC transporter INS88_06240 PF00664 ABC transporter transmembrane region INS88_06245 PF13185 GAF domain INS88_06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_06245 PF07730 Histidine kinase INS88_06250 PF00005 ABC transporter INS88_06250 PF00664 ABC transporter transmembrane region INS88_06255 PF00005 ABC transporter INS88_06255 PF00664 ABC transporter transmembrane region INS88_06260 PF10417 C-terminal domain of 1-Cys peroxiredoxin INS88_06260 PF00578 AhpC/TSA family INS88_06265 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_06265 PF13192 Thioredoxin domain INS88_06270 PF00072 Response regulator receiver domain INS88_06270 PF00196 Bacterial regulatory proteins, luxR family INS88_06275 PF06827 Zinc finger found in FPG and IleRS INS88_06275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain INS88_06275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain INS88_06280 PF14622 Ribonuclease-III-like INS88_06280 PF00035 Double-stranded RNA binding motif INS88_06285 PF02620 Large ribosomal RNA subunit accumulation protein YceD INS88_06295 PF01467 Cytidylyltransferase-like INS88_06305 PF00271 Helicase conserved C-terminal domain INS88_06305 PF17191 RecG wedge domain INS88_06305 PF00270 DEAD/DEAH box helicase INS88_06310 PF00830 Ribosomal L28 family INS88_06320 PF00586 AIR synthase related protein, N-terminal domain INS88_06320 PF02769 AIR synthase related protein, C-terminal domain INS88_06325 PF03358 NADPH-dependent FMN reductase INS88_06330 PF07478 D-ala D-ala ligase C-terminus INS88_06330 PF01820 D-ala D-ala ligase N-terminus INS88_06340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INS88_06350 PF03577 Peptidase family C69 INS88_06355 PF00694 Aconitase C-terminal domain INS88_06360 PF00330 Aconitase family (aconitate hydratase) INS88_06370 PF00534 Glycosyl transferases group 1 INS88_06370 PF13439 Glycosyltransferase Family 4 INS88_06385 PF06800 Sugar transport protein INS88_06390 PF01432 Peptidase family M3 INS88_06415 PF00528 Binding-protein-dependent transport system inner membrane component INS88_06420 PF00528 Binding-protein-dependent transport system inner membrane component INS88_06425 PF00356 Bacterial regulatory proteins, lacI family INS88_06440 PF00749 tRNA synthetases class I (E and Q), catalytic domain INS88_06445 PF00155 Aminotransferase class I and II INS88_06450 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_06455 PF00501 AMP-binding enzyme INS88_06465 PF00578 AhpC/TSA family INS88_06480 PF01725 Ham1 family INS88_06485 PF03725 3' exoribonuclease family, domain 2 INS88_06485 PF01138 3' exoribonuclease family, domain 1 INS88_06490 PF12706 Beta-lactamase superfamily domain INS88_06495 PF01177 Asp/Glu/Hydantoin racemase INS88_06505 PF02617 ATP-dependent Clp protease adaptor protein ClpS INS88_06510 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain INS88_06510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain INS88_06515 PF04851 Type III restriction enzyme, res subunit INS88_06525 PF00216 Bacterial DNA-binding protein INS88_06530 PF06826 Predicted Permease Membrane Region INS88_06530 PF02080 TrkA-C domain INS88_06545 PF02540 NAD synthase INS88_06560 PF00149 Calcineurin-like phosphoesterase INS88_06560 PF02872 5'-nucleotidase, C-terminal domain INS88_06580 PF00881 Nitroreductase family INS88_06600 PF06280 Fn3-like domain INS88_06600 PF00746 LPXTG cell wall anchor motif INS88_06600 PF02225 PA domain INS88_06600 PF00082 Subtilase family INS88_06665 PF01546 Peptidase family M20/M25/M40 INS88_06665 PF07687 Peptidase dimerisation domain INS88_06685 PF01548 Transposase INS88_06685 PF02371 Transposase IS116/IS110/IS902 family INS88_06700 PF05175 Methyltransferase small domain INS88_06700 PF17827 PrmC N-terminal domain INS88_06720 PF02581 Thiamine monophosphate synthase INS88_06725 PF02110 Hydroxyethylthiazole kinase family INS88_06730 PF00083 Sugar (and other) transporter INS88_06735 PF03070 TENA/THI-4/PQQC family INS88_06735 PF02581 Thiamine monophosphate synthase INS88_06735 PF08543 Phosphomethylpyrimidine kinase INS88_06770 PF02016 LD-carboxypeptidase N-terminal domain INS88_06770 PF17676 LD-carboxypeptidase C-terminal domain INS88_06775 PF13344 Haloacid dehalogenase-like hydrolase INS88_06780 PF01668 SmpB protein INS88_06785 PF08525 Opacity-associated protein A N-terminal motif INS88_06785 PF01476 LysM domain INS88_06785 PF01551 Peptidase family M23 INS88_06790 PF18075 FtsX extracellular domain INS88_06795 PF00005 ABC transporter INS88_06800 PF03462 PCRF domain INS88_06800 PF00472 RF-1 domain INS88_06835 PF00437 Type II/IV secretion system protein INS88_06860 PF00580 UvrD/REP helicase N-terminal domain INS88_06860 PF00570 HRDC domain INS88_06860 PF13361 UvrD-like helicase C-terminal domain INS88_06875 PF00270 DEAD/DEAH box helicase INS88_06875 PF00271 Helicase conserved C-terminal domain INS88_06880 PF01914 MarC family integral membrane protein INS88_06890 PF05195 Aminopeptidase P, N-terminal domain INS88_06890 PF00557 Metallopeptidase family M24 INS88_06895 PF00571 CBS domain INS88_06895 PF01769 Divalent cation transporter INS88_06895 PF03448 MgtE intracellular N domain INS88_06905 PF01883 Iron-sulfur cluster assembly protein INS88_06905 PF10609 NUBPL iron-transfer P-loop NTPase INS88_06910 PF01596 O-methyltransferase INS88_06920 PF03641 Possible lysine decarboxylase INS88_06925 PF01048 Phosphorylase superfamily INS88_06930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_06930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_06930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_06930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_06935 PF01791 DeoC/LacD family aldolase INS88_06945 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain INS88_06945 PF00591 Glycosyl transferase family, a/b domain INS88_06945 PF02885 Glycosyl transferase family, helical bundle domain INS88_06950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INS88_06955 PF02653 Branched-chain amino acid transport system / permease component INS88_06960 PF02653 Branched-chain amino acid transport system / permease component INS88_06965 PF00005 ABC transporter INS88_06970 PF02608 ABC transporter substrate-binding protein PnrA-like INS88_06975 PF00483 Nucleotidyl transferase INS88_06975 PF01050 Mannose-6-phosphate isomerase INS88_06990 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain INS88_06990 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain INS88_06995 PF00464 Serine hydroxymethyltransferase INS88_07000 PF00551 Formyl transferase INS88_07005 PF02632 BioY family INS88_07010 PF01648 4'-phosphopantetheinyl transferase superfamily INS88_07015 PF00698 Acyl transferase domain INS88_07020 PF01039 Carboxyl transferase domain INS88_07025 PF00289 Biotin carboxylase, N-terminal domain INS88_07025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INS88_07025 PF00364 Biotin-requiring enzyme INS88_07025 PF02785 Biotin carboxylase C-terminal domain INS88_07035 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_07035 PF00754 F5/8 type C domain INS88_07035 PF13088 BNR repeat-like domain INS88_07045 PF01494 FAD binding domain INS88_07050 PF01012 Electron transfer flavoprotein domain INS88_07050 PF00766 Electron transfer flavoprotein FAD-binding domain INS88_07055 PF01012 Electron transfer flavoprotein domain INS88_07065 PF00753 Metallo-beta-lactamase superfamily INS88_07065 PF16123 Hydroxyacylglutathione hydrolase C-terminus INS88_07070 PF00083 Sugar (and other) transporter INS88_07075 PF01575 MaoC like domain INS88_07080 PF00501 AMP-binding enzyme INS88_07080 PF13193 AMP-binding enzyme C-terminal domain INS88_07085 PF02515 CoA-transferase family III INS88_07090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INS88_07090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INS88_07090 PF02770 Acyl-CoA dehydrogenase, middle domain INS88_07095 PF07859 alpha/beta hydrolase fold INS88_07105 PF14602 Hexapeptide repeat of succinyl-transferase INS88_07105 PF12464 Maltose acetyltransferase INS88_07115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain INS88_07115 PF00056 lactate/malate dehydrogenase, NAD binding domain INS88_07130 PF00342 Phosphoglucose isomerase INS88_07135 PF00365 Phosphofructokinase INS88_07145 PF02142 MGS-like domain INS88_07145 PF01808 AICARFT/IMPCHase bienzyme INS88_07160 PF02629 CoA binding domain INS88_07160 PF00549 CoA-ligase INS88_07165 PF08442 ATP-grasp domain INS88_07165 PF00549 CoA-ligase INS88_07170 PF01757 Acyltransferase family INS88_07175 PF13361 UvrD-like helicase C-terminal domain INS88_07175 PF00580 UvrD/REP helicase N-terminal domain INS88_07180 PF08818 Domain of unknown function (DU1801) INS88_07195 PF00958 GMP synthase C terminal domain INS88_07195 PF00117 Glutamine amidotransferase class-I INS88_07195 PF02540 NAD synthase INS88_07200 PF00849 RNA pseudouridylate synthase INS88_07205 PF07085 DRTGG domain INS88_07205 PF01515 Phosphate acetyl/butaryl transferase INS88_07210 PF00871 Acetokinase family INS88_07225 PF00005 ABC transporter INS88_07235 PF10415 Fumarase C C-terminus INS88_07235 PF00206 Lyase INS88_07240 PF00478 IMP dehydrogenase / GMP reductase domain INS88_07250 PF00571 CBS domain INS88_07250 PF00478 IMP dehydrogenase / GMP reductase domain INS88_07255 PF02467 Transcription factor WhiB INS88_07260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain INS88_07260 PF02769 AIR synthase related protein, C-terminal domain INS88_07260 PF00586 AIR synthase related protein, N-terminal domain INS88_07265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain INS88_07265 PF02843 Phosphoribosylglycinamide synthetase, C domain INS88_07265 PF02844 Phosphoribosylglycinamide synthetase, N domain INS88_07270 PF00551 Formyl transferase INS88_07275 PF00586 AIR synthase related protein, N-terminal domain INS88_07275 PF02769 AIR synthase related protein, C-terminal domain INS88_07280 PF00156 Phosphoribosyl transferase domain INS88_07280 PF13537 Glutamine amidotransferase domain INS88_07285 PF01259 SAICAR synthetase INS88_07290 PF00731 AIR carboxylase INS88_07300 PF00166 Chaperonin 10 Kd subunit INS88_07310 PF02535 ZIP Zinc transporter INS88_07315 PF00814 Glycoprotease family INS88_07320 PF00209 Sodium:neurotransmitter symporter family INS88_07330 PF13183 4Fe-4S dicluster domain INS88_07330 PF13085 2Fe-2S iron-sulfur cluster binding domain INS88_07335 PF00890 FAD binding domain INS88_07335 PF02910 Fumarate reductase flavoprotein C-term INS88_07350 PF00814 Glycoprotease family INS88_07360 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE INS88_07365 PF01168 Alanine racemase, N-terminal domain INS88_07365 PF00842 Alanine racemase, C-terminal domain INS88_07370 PF01256 Carbohydrate kinase INS88_07370 PF03853 YjeF-related protein N-terminus INS88_07375 PF01380 SIS domain INS88_07380 PF00485 Phosphoribulokinase / Uridine kinase family INS88_07385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_07385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_07385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_07385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_07390 PF00380 Ribosomal protein S9/S16 INS88_07395 PF00572 Ribosomal protein L13 INS88_07405 PF07155 ECF-type riboflavin transporter, S component INS88_07410 PF12558 ATP-binding cassette cobalt transporter INS88_07410 PF00005 ABC transporter INS88_07415 PF02361 Cobalt transport protein INS88_07420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INS88_07420 PF03466 LysR substrate binding domain INS88_07430 PF01416 tRNA pseudouridine synthase INS88_07435 PF00480 ROK family INS88_07445 PF00528 Binding-protein-dependent transport system inner membrane component INS88_07450 PF00005 ABC transporter INS88_07455 PF01022 Bacterial regulatory protein, arsR family INS88_07465 PF01451 Low molecular weight phosphotyrosine protein phosphatase INS88_07475 PF13411 MerR HTH family regulatory protein INS88_07475 PF07739 TipAS antibiotic-recognition domain INS88_07480 PF01196 Ribosomal protein L17 INS88_07485 PF01000 RNA polymerase Rpb3/RpoA insert domain INS88_07485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain INS88_07485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain INS88_07490 PF00411 Ribosomal protein S11 INS88_07495 PF00416 Ribosomal protein S13/S18 INS88_07500 PF00444 Ribosomal protein L36 INS88_07505 PF01176 Translation initiation factor 1A / IF-1 INS88_07510 PF00557 Metallopeptidase family M24 INS88_07520 PF00344 SecY translocase INS88_07530 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A INS88_07535 PF00327 Ribosomal protein L30p/L7e INS88_07540 PF00333 Ribosomal protein S5, N-terminal domain INS88_07540 PF03719 Ribosomal protein S5, C-terminal domain INS88_07545 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast INS88_07550 PF00347 Ribosomal protein L6 INS88_07555 PF00410 Ribosomal protein S8 INS88_07560 PF00253 Ribosomal protein S14p/S29e INS88_07565 PF00281 Ribosomal protein L5 INS88_07565 PF00673 ribosomal L5P family C-terminus INS88_07570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 INS88_07575 PF00238 Ribosomal protein L14p/L23e INS88_07580 PF00366 Ribosomal protein S17 INS88_07585 PF00831 Ribosomal L29 protein INS88_07590 PF00252 Ribosomal protein L16p/L10e INS88_07595 PF00189 Ribosomal protein S3, C-terminal domain INS88_07595 PF07650 KH domain INS88_07600 PF00237 Ribosomal protein L22p/L17e INS88_07605 PF00203 Ribosomal protein S19 INS88_07610 PF03947 Ribosomal Proteins L2, C-terminal domain INS88_07610 PF00181 Ribosomal Proteins L2, RNA binding domain INS88_07615 PF00276 Ribosomal protein L23 INS88_07620 PF00573 Ribosomal protein L4/L1 family INS88_07625 PF00297 Ribosomal protein L3 INS88_07630 PF00338 Ribosomal protein S10p/S20e INS88_07635 PF13419 Haloacid dehalogenase-like hydrolase INS88_07640 PF00009 Elongation factor Tu GTP binding domain INS88_07640 PF03143 Elongation factor Tu C-terminal domain INS88_07640 PF03144 Elongation factor Tu domain 2 INS88_07645 PF14492 Elongation Factor G, domain II INS88_07645 PF00679 Elongation factor G C-terminus INS88_07645 PF00009 Elongation factor Tu GTP binding domain INS88_07645 PF03144 Elongation factor Tu domain 2 INS88_07645 PF03764 Elongation factor G, domain IV INS88_07650 PF00177 Ribosomal protein S7p/S5e INS88_07655 PF00164 Ribosomal protein S12/S23 INS88_07660 PF00324 Amino acid permease INS88_07665 PF05000 RNA polymerase Rpb1, domain 4 INS88_07665 PF00623 RNA polymerase Rpb1, domain 2 INS88_07665 PF04997 RNA polymerase Rpb1, domain 1 INS88_07665 PF04998 RNA polymerase Rpb1, domain 5 INS88_07665 PF04983 RNA polymerase Rpb1, domain 3 INS88_07670 PF04560 RNA polymerase Rpb2, domain 7 INS88_07670 PF00562 RNA polymerase Rpb2, domain 6 INS88_07670 PF10385 RNA polymerase beta subunit external 1 domain INS88_07670 PF04565 RNA polymerase Rpb2, domain 3 INS88_07670 PF04561 RNA polymerase Rpb2, domain 2 INS88_07670 PF04563 RNA polymerase beta subunit INS88_07675 PF16320 Ribosomal protein L7/L12 dimerisation domain INS88_07675 PF00542 Ribosomal protein L7/L12 C-terminal domain INS88_07680 PF00466 Ribosomal protein L10 INS88_07685 PF00485 Phosphoribulokinase / Uridine kinase family INS88_07690 PF00687 Ribosomal protein L1p/L10e family INS88_07695 PF00298 Ribosomal protein L11, RNA binding domain INS88_07695 PF03946 Ribosomal protein L11, N-terminal domain INS88_07700 PF02357 Transcription termination factor nusG INS88_07705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex INS88_07715 PF00155 Aminotransferase class I and II INS88_07725 PF00962 Adenosine/AMP deaminase INS88_07740 PF01565 FAD binding domain INS88_07740 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain INS88_07745 PF00471 Ribosomal protein L33 INS88_07765 PF04461 Protein of unknown function (DUF520) INS88_07770 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_07775 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus INS88_07775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein INS88_07785 PF10646 Sporulation and spore germination INS88_07785 PF10647 Lipoprotein LpqB beta-propeller domain INS88_07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_07790 PF00672 HAMP domain INS88_07790 PF00512 His Kinase A (phospho-acceptor) domain INS88_07795 PF00072 Response regulator receiver domain INS88_07795 PF00486 Transcriptional regulatory protein, C terminal INS88_07815 PF07726 ATPase family associated with various cellular activities (AAA) INS88_07815 PF17863 AAA lid domain INS88_07855 PF02467 Transcription factor WhiB INS88_07860 PF00459 Inositol monophosphatase family INS88_07870 PF01758 Sodium Bile acid symporter family INS88_07875 PF00483 Nucleotidyl transferase INS88_07880 PF04321 RmlD substrate binding domain INS88_07905 PF00005 ABC transporter INS88_07905 PF14524 Wzt C-terminal domain INS88_07915 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain INS88_07915 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain INS88_07915 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain INS88_07930 PF02350 UDP-N-acetylglucosamine 2-epimerase INS88_07965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INS88_07965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INS88_07970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INS88_07975 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_07975 PF12804 MobA-like NTP transferase domain INS88_07990 PF16363 GDP-mannose 4,6 dehydratase INS88_08010 PF03816 Cell envelope-related transcriptional attenuator domain INS88_08020 PF00512 His Kinase A (phospho-acceptor) domain INS88_08020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_08020 PF08521 Two-component sensor kinase N-terminal INS88_08025 PF00072 Response regulator receiver domain INS88_08025 PF00486 Transcriptional regulatory protein, C terminal INS88_08030 PF00211 Adenylate and Guanylate cyclase catalytic domain INS88_08030 PF16701 Adenylate cyclase regulatory domain INS88_08040 PF02545 Maf-like protein INS88_08050 PF00285 Citrate synthase, C-terminal domain INS88_08055 PF00155 Aminotransferase class I and II INS88_08060 PF00037 4Fe-4S binding domain INS88_08075 PF00679 Elongation factor G C-terminus INS88_08075 PF14492 Elongation Factor G, domain II INS88_08075 PF03144 Elongation factor Tu domain 2 INS88_08075 PF00009 Elongation factor Tu GTP binding domain INS88_08085 PF00664 ABC transporter transmembrane region INS88_08085 PF00005 ABC transporter INS88_08090 PF00664 ABC transporter transmembrane region INS88_08090 PF00005 ABC transporter INS88_08095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_08100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_08100 PF00005 ABC transporter INS88_08105 PF00528 Binding-protein-dependent transport system inner membrane component INS88_08105 PF12911 N-terminal TM domain of oligopeptide transport permease C INS88_08110 PF00528 Binding-protein-dependent transport system inner membrane component INS88_08115 PF03099 Biotin/lipoate A/B protein ligase family INS88_08120 PF04055 Radical SAM superfamily INS88_08125 PF13193 AMP-binding enzyme C-terminal domain INS88_08125 PF00501 AMP-binding enzyme INS88_08130 PF02127 Aminopeptidase I zinc metalloprotease (M18) INS88_08145 PF03971 Monomeric isocitrate dehydrogenase INS88_08150 PF04143 Sulphur transport INS88_08155 PF01206 Sulfurtransferase TusA INS88_08175 PF01226 Formate/nitrite transporter INS88_08185 PF02525 Flavodoxin-like fold INS88_08195 PF01327 Polypeptide deformylase INS88_08200 PF01741 Large-conductance mechanosensitive channel, MscL INS88_08210 PF00528 Binding-protein-dependent transport system inner membrane component INS88_08225 PF00881 Nitroreductase family INS88_08250 PF06965 Na+/H+ antiporter 1 INS88_08250 PF13462 Thioredoxin INS88_08285 PF02384 N-6 DNA Methylase INS88_08285 PF12161 HsdM N-terminal domain INS88_08300 PF07508 Recombinase INS88_08300 PF00239 Resolvase, N terminal domain INS88_08300 PF13408 Recombinase zinc beta ribbon domain INS88_08315 PF00892 EamA-like transporter family INS88_08320 PF07690 Major Facilitator Superfamily INS88_08325 PF00440 Bacterial regulatory proteins, tetR family INS88_08325 PF02909 Tetracyclin repressor-like, C-terminal domain INS88_08365 PF05105 Bacteriophage holin family INS88_08435 PF00574 Clp protease INS88_08440 PF04860 Phage portal protein INS88_08455 PF03354 Phage Terminase INS88_08490 PF13276 HTH-like domain INS88_08490 PF00665 Integrase core domain INS88_08510 PF01381 Helix-turn-helix INS88_08540 PF06071 Protein of unknown function (DUF933) INS88_08540 PF01926 50S ribosome-binding GTPase INS88_08545 PF02646 RmuC family INS88_08550 PF02401 LytB protein INS88_08555 PF13742 OB-fold nucleic acid binding domain INS88_08555 PF02601 Exonuclease VII, large subunit INS88_08560 PF02609 Exonuclease VII small subunit INS88_08565 PF00294 pfkB family carbohydrate kinase INS88_08570 PF01255 Putative undecaprenyl diphosphate synthase INS88_08575 PF03006 Haemolysin-III related INS88_08585 PF02585 GlcNAc-PI de-N-acetylase INS88_08590 PF01272 Transcription elongation factor, GreA/GreB, C-term INS88_08590 PF03449 Transcription elongation factor, N-terminal INS88_08595 PF01625 Peptide methionine sulfoxide reductase INS88_08605 PF00474 Sodium:solute symporter family INS88_08610 PF00171 Aldehyde dehydrogenase family INS88_08625 PF00005 ABC transporter INS88_08640 PF00005 ABC transporter INS88_08655 PF06965 Na+/H+ antiporter 1 INS88_08660 PF02541 Ppx/GppA phosphatase family INS88_08680 PF00113 Enolase, C-terminal TIM barrel domain INS88_08680 PF03952 Enolase, N-terminal domain INS88_08685 PF01156 Inosine-uridine preferring nucleoside hydrolase INS88_08690 PF00271 Helicase conserved C-terminal domain INS88_08690 PF02559 CarD-like/TRCF domain INS88_08690 PF00270 DEAD/DEAH box helicase INS88_08690 PF03461 TRCF domain INS88_08690 PF17757 UvrB interaction domain INS88_08695 PF01195 Peptidyl-tRNA hydrolase INS88_08705 PF01386 Ribosomal L25p family INS88_08705 PF14693 Ribosomal protein TL5, C-terminal domain INS88_08710 PF00005 ABC transporter INS88_08715 PF14572 Phosphoribosyl synthetase-associated domain INS88_08715 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase INS88_08720 PF12804 MobA-like NTP transferase domain INS88_08720 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_08735 PF00005 ABC transporter INS88_08735 PF13732 Domain of unknown function (DUF4162) INS88_08750 PF16326 ABC transporter C-terminal domain INS88_08750 PF00005 ABC transporter INS88_08750 PF12848 ABC transporter INS88_08755 PF00288 GHMP kinases N terminal domain INS88_08755 PF08544 GHMP kinases C terminal INS88_08760 PF00398 Ribosomal RNA adenine dimethylase INS88_08770 PF01026 TatD related DNase INS88_08775 PF09334 tRNA synthetases class I (M) INS88_08780 PF17802 Prealbumin-like fold domain INS88_08780 PF08341 Thioester domain INS88_08785 PF00857 Isochorismatase family INS88_08790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases INS88_08805 PF01053 Cys/Met metabolism PLP-dependent enzyme INS88_08815 PF00005 ABC transporter INS88_08830 PF05175 Methyltransferase small domain INS88_08835 PF00248 Aldo/keto reductase family INS88_08840 PF02028 BCCT, betaine/carnitine/choline family transporter INS88_08845 PF01594 AI-2E family transporter INS88_08855 PF00005 ABC transporter INS88_08860 PF01032 FecCD transport family INS88_08865 PF08768 Domain of unknown function (DUF1794) INS88_08870 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_08870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_08890 PF09924 Uncharacterised conserved protein (DUF2156) INS88_08890 PF01336 OB-fold nucleic acid binding domain INS88_08890 PF16995 Transmembrane region of lysyl-tRNA synthetase INS88_08890 PF00152 tRNA synthetases class II (D, K and N) INS88_08895 PF02652 L-lactate permease INS88_08900 PF02754 Cysteine-rich domain INS88_08905 PF13183 4Fe-4S dicluster domain INS88_08905 PF02589 LUD domain INS88_08905 PF11870 Domain of unknown function (DUF3390) INS88_08910 PF02589 LUD domain INS88_08930 PF00381 PTS HPr component phosphorylation site INS88_08935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_08940 PF02378 Phosphotransferase system, EIIC INS88_08940 PF00367 phosphotransferase system, EIIB INS88_08955 PF13732 Domain of unknown function (DUF4162) INS88_08955 PF00005 ABC transporter INS88_08960 PF00293 NUDIX domain INS88_08970 PF05524 PEP-utilising enzyme, N-terminal INS88_08970 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_08970 PF00391 PEP-utilising enzyme, mobile domain INS88_08975 PF03123 CAT RNA binding domain INS88_08975 PF00874 PRD domain INS88_08980 PF02378 Phosphotransferase system, EIIC INS88_08980 PF00367 phosphotransferase system, EIIB INS88_08980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_09000 PF05167 Uncharacterised ACR (DUF711) INS88_09010 PF00444 Ribosomal protein L36 INS88_09015 PF01197 Ribosomal protein L31 INS88_09020 PF00253 Ribosomal protein S14p/S29e INS88_09025 PF00471 Ribosomal protein L33 INS88_09030 PF00830 Ribosomal L28 family INS88_09045 PF00083 Sugar (and other) transporter INS88_09050 PF07859 alpha/beta hydrolase fold INS88_09055 PF00392 Bacterial regulatory proteins, gntR family INS88_09055 PF07702 UTRA domain INS88_09060 PF00005 ABC transporter INS88_09065 PF01032 FecCD transport family INS88_09070 PF01032 FecCD transport family INS88_09075 PF01497 Periplasmic binding protein INS88_09085 PF00005 ABC transporter INS88_09120 PF03453 MoeA N-terminal region (domain I and II) INS88_09120 PF03454 MoeA C-terminal region (domain IV) INS88_09120 PF00994 Probable molybdopterin binding domain INS88_09155 PF00582 Universal stress protein family INS88_09160 PF00877 NlpC/P60 family INS88_09160 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain INS88_09165 PF18357 Diphteria toxin repressor SH3 domain INS88_09165 PF01325 Iron dependent repressor, N-terminal DNA binding domain INS88_09165 PF02742 Iron dependent repressor, metal binding and dimerisation domain INS88_09170 PF00266 Aminotransferase class-V INS88_09175 PF00860 Permease family INS88_09180 PF01238 Phosphomannose isomerase type I INS88_09185 PF11228 Protein of unknown function (DUF3027) INS88_09190 PF00313 'Cold-shock' DNA-binding domain INS88_09200 PF04012 PspA/IM30 family INS88_09210 PF00072 Response regulator receiver domain INS88_09210 PF00486 Transcriptional regulatory protein, C terminal INS88_09215 PF00512 His Kinase A (phospho-acceptor) domain INS88_09215 PF00672 HAMP domain INS88_09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_09220 PF00501 AMP-binding enzyme INS88_09220 PF01553 Acyltransferase INS88_09225 PF00106 short chain dehydrogenase INS88_09235 PF00118 TCP-1/cpn60 chaperonin family INS88_09250 PF03167 Uracil DNA glycosylase superfamily INS88_09255 PF03173 Putative carbohydrate binding domain INS88_09255 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain INS88_09255 PF00728 Glycosyl hydrolase family 20, catalytic domain INS88_09255 PF02838 Glycosyl hydrolase family 20, domain 2 INS88_09260 PF00528 Binding-protein-dependent transport system inner membrane component INS88_09265 PF00528 Binding-protein-dependent transport system inner membrane component INS88_09270 PF01547 Bacterial extracellular solute-binding protein INS88_09285 PF00356 Bacterial regulatory proteins, lacI family INS88_09295 PF02899 Phage integrase, N-terminal SAM-like domain INS88_09295 PF00589 Phage integrase family INS88_09305 PF13614 AAA domain INS88_09370 PF01464 Transglycosylase SLT domain INS88_09410 PF00145 C-5 cytosine-specific DNA methylase INS88_09435 PF00145 C-5 cytosine-specific DNA methylase INS88_09535 PF00069 Protein kinase domain INS88_09535 PF00400 WD domain, G-beta repeat INS88_09540 PF17912 MalK OB fold domain INS88_09540 PF00005 ABC transporter INS88_09555 PF01547 Bacterial extracellular solute-binding protein INS88_09560 PF00528 Binding-protein-dependent transport system inner membrane component INS88_09565 PF00528 Binding-protein-dependent transport system inner membrane component INS88_09580 PF02774 Semialdehyde dehydrogenase, dimerisation domain INS88_09580 PF01118 Semialdehyde dehydrogenase, NAD binding domain INS88_09585 PF00696 Amino acid kinase family INS88_09585 PF13840 ACT domain INS88_09585 PF01842 ACT domain INS88_09590 PF02132 RecR protein INS88_09590 PF13662 Toprim domain INS88_09595 PF12169 DNA polymerase III subunits gamma and tau domain III INS88_09630 PF00860 Permease family INS88_09645 PF00588 SpoU rRNA Methylase family INS88_09645 PF08032 RNA 2'-O ribose methyltransferase substrate binding INS88_09650 PF09190 DALR domain INS88_09650 PF01406 tRNA synthetases class I (C) catalytic domain INS88_09660 PF00005 ABC transporter INS88_09675 PF02542 YgbB family INS88_09680 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase INS88_09685 PF02559 CarD-like/TRCF domain INS88_09690 PF00486 Transcriptional regulatory protein, C terminal INS88_09690 PF00072 Response regulator receiver domain INS88_09695 PF00512 His Kinase A (phospho-acceptor) domain INS88_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_09700 PF01895 PhoU domain INS88_09710 PF00300 Histidine phosphatase superfamily (branch 1) INS88_09725 PF16555 Gram-positive pilin subunit D1, N-terminal domain INS88_09725 PF00746 LPXTG cell wall anchor motif INS88_09750 PF00589 Phage integrase family INS88_09750 PF02899 Phage integrase, N-terminal SAM-like domain INS88_09760 PF13614 AAA domain INS88_09780 PF02661 Fic/DOC family INS88_09800 PF03432 Relaxase/Mobilisation nuclease domain INS88_09875 PF00561 alpha/beta hydrolase fold INS88_09880 PF12169 DNA polymerase III subunits gamma and tau domain III INS88_09885 PF02223 Thymidylate kinase INS88_09890 PF01751 Toprim domain INS88_09890 PF13368 Topoisomerase C-terminal repeat INS88_09890 PF01131 DNA topoisomerase INS88_09895 PF05175 Methyltransferase small domain INS88_09895 PF17827 PrmC N-terminal domain INS88_09905 PF13443 Cro/C1-type HTH DNA-binding domain INS88_09910 PF00271 Helicase conserved C-terminal domain INS88_09910 PF09369 Domain of unknown function (DUF1998) INS88_09910 PF00270 DEAD/DEAH box helicase INS88_09940 PF00437 Type II/IV secretion system protein INS88_09955 PF00561 alpha/beta hydrolase fold INS88_09960 PF00730 HhH-GPD superfamily base excision DNA repair protein INS88_09960 PF00633 Helix-hairpin-helix motif INS88_09960 PF10576 Iron-sulfur binding domain of endonuclease III INS88_09965 PF13545 Crp-like helix-turn-helix domain INS88_09965 PF00027 Cyclic nucleotide-binding domain INS88_09980 PF02467 Transcription factor WhiB INS88_09985 PF00905 Penicillin binding protein transpeptidase domain INS88_09985 PF00912 Transglycosylase INS88_10000 PF02903 Alpha amylase, N-terminal ig-like domain INS88_10000 PF00128 Alpha amylase, catalytic domain INS88_10015 PF06463 Molybdenum Cofactor Synthesis C INS88_10015 PF04055 Radical SAM superfamily INS88_10020 PF02391 MoaE protein INS88_10025 PF01967 MoaC family INS88_10030 PF03453 MoeA N-terminal region (domain I and II) INS88_10030 PF00994 Probable molybdopterin binding domain INS88_10030 PF03454 MoeA C-terminal region (domain IV) INS88_10035 PF00994 Probable molybdopterin binding domain INS88_10045 PF00528 Binding-protein-dependent transport system inner membrane component INS88_10070 PF16555 Gram-positive pilin subunit D1, N-terminal domain INS88_10070 PF00746 LPXTG cell wall anchor motif INS88_10080 PF00581 Rhodanese-like domain INS88_10080 PF00899 ThiF family INS88_10095 PF08903 Domain of unknown function (DUF1846) INS88_10100 PF02371 Transposase IS116/IS110/IS902 family INS88_10100 PF01548 Transposase INS88_10105 PF05525 Branched-chain amino acid transport protein INS88_10115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INS88_10135 PF00535 Glycosyl transferase family 2 INS88_10145 PF01842 ACT domain INS88_10145 PF00800 Prephenate dehydratase INS88_10150 PF00781 Diacylglycerol kinase catalytic domain INS88_10155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_10155 PF02403 Seryl-tRNA synthetase N-terminal domain INS88_10185 PF00939 Sodium:sulfate symporter transmembrane region INS88_10210 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain INS88_10210 PF01113 Dihydrodipicolinate reductase, N-terminus INS88_10215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INS88_10215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INS88_10225 PF01867 CRISPR associated protein Cas1 INS88_10255 PF00270 DEAD/DEAH box helicase INS88_10255 PF18395 Cas3 C-terminal domain INS88_10255 PF18019 HD domain INS88_10265 PF05958 tRNA (Uracil-5-)-methyltransferase INS88_10280 PF04408 Helicase associated domain (HA2) INS88_10280 PF00270 DEAD/DEAH box helicase INS88_10280 PF08482 ATP-dependent helicase C-terminal INS88_10280 PF00271 Helicase conserved C-terminal domain INS88_10290 PF02254 TrkA-N domain INS88_10290 PF02080 TrkA-C domain INS88_10295 PF02386 Cation transport protein INS88_10315 PF12704 MacB-like periplasmic core domain INS88_10315 PF02687 FtsX-like permease family INS88_10315 PF00005 ABC transporter INS88_10320 PF12704 MacB-like periplasmic core domain INS88_10320 PF00005 ABC transporter INS88_10320 PF02687 FtsX-like permease family INS88_10335 PF00486 Transcriptional regulatory protein, C terminal INS88_10335 PF00072 Response regulator receiver domain INS88_10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_10340 PF00512 His Kinase A (phospho-acceptor) domain INS88_10340 PF00672 HAMP domain INS88_10345 PF01702 Queuine tRNA-ribosyltransferase INS88_10355 PF01712 Deoxynucleoside kinase INS88_10375 PF00585 C-terminal regulatory domain of Threonine dehydratase INS88_10375 PF00291 Pyridoxal-phosphate dependent enzyme INS88_10390 PF00561 alpha/beta hydrolase fold INS88_10395 PF00248 Aldo/keto reductase family INS88_10400 PF08543 Phosphomethylpyrimidine kinase INS88_10410 PF13088 BNR repeat-like domain INS88_10410 PF00754 F5/8 type C domain INS88_10410 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_10415 PF00899 ThiF family INS88_10420 PF01026 TatD related DNase INS88_10425 PF07690 Major Facilitator Superfamily INS88_10430 PF00772 DnaB-like helicase N terminal domain INS88_10430 PF03796 DnaB-like helicase C terminal domain INS88_10450 PF03948 Ribosomal protein L9, C-terminal domain INS88_10450 PF01281 Ribosomal protein L9, N-terminal domain INS88_10455 PF01084 Ribosomal protein S18 INS88_10460 PF00436 Single-strand binding protein family INS88_10465 PF01250 Ribosomal protein S6 INS88_10470 PF00912 Transglycosylase INS88_10470 PF00905 Penicillin binding protein transpeptidase domain INS88_10475 PF01594 AI-2E family transporter INS88_10480 PF07690 Major Facilitator Superfamily INS88_10485 PF13735 tRNA nucleotidyltransferase domain 2 putative INS88_10485 PF12627 Probable RNA and SrmB- binding site of polymerase A INS88_10485 PF01743 Poly A polymerase head domain INS88_10490 PF00293 NUDIX domain INS88_10505 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_10510 PF00155 Aminotransferase class I and II INS88_10515 PF07478 D-ala D-ala ligase C-terminus INS88_10515 PF01820 D-ala D-ala ligase N-terminus INS88_10520 PF17762 HTH domain found in ParB protein INS88_10520 PF02195 ParB-like nuclease domain INS88_10525 PF13614 AAA domain INS88_10530 PF02527 rRNA small subunit methyltransferase G INS88_10540 PF02096 60Kd inner membrane protein INS88_10545 PF01809 Putative membrane protein insertion efficiency factor INS88_10550 PF00825 Ribonuclease P INS88_10555 PF00468 Ribosomal protein L34