Tpau_0001	SM00382	ATPases associated with a variety of cellular activities
Tpau_0001	SM00760	Bacterial dnaA protein helix-turn-helix domain
Tpau_0003	SM00480	DNA polymerase III beta subunit
Tpau_0004	SM01350	Tpau_0004
Tpau_0005	SM00382	ATPases associated with a variety of cellular activities
Tpau_0009	SM00387	Histidine kinase-like ATPases
Tpau_0009	SM00433	TopoisomeraseII
Tpau_0010	SM00434	DNA Topoisomerase IV
Tpau_0015	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_0015	SM01091	Transporter associated domain
Tpau_0027	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_0027	SM00740	Tpau_0027
Tpau_0028	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_0031	SM00331	Sigma factor PP2C-like phosphatases
Tpau_0031	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
Tpau_0032	SM00240	Forkhead associated domain
Tpau_0033	SM00240	Forkhead associated domain
Tpau_0039	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0041	SM00829	Enoylreductase
Tpau_0090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_0093	SM00448	cheY-homologous receiver domain
Tpau_0093	SM00862	Transcriptional regulatory protein, C terminal
Tpau_0094	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_0094	SM00387	Histidine kinase-like ATPases
Tpau_0094	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_0095	SM00947	Carbonic anhydrase
Tpau_0097	SM00448	cheY-homologous receiver domain
Tpau_0097	SM00862	Transcriptional regulatory protein, C terminal
Tpau_0098	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_0098	SM00387	Histidine kinase-like ATPases
Tpau_0098	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_0101	SM00382	ATPases associated with a variety of cellular activities
Tpau_0124	SM00822	Tpau_0124
Tpau_0131	SM00450	Rhodanese Homology Domain
Tpau_0146	SM00855	Phosphoglycerate mutase family
Tpau_0157	SM00563	Phosphate acyltransferases
Tpau_0163	SM00014	Acid phosphatase homologues
Tpau_0167	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Tpau_0167	SM00267	diguanylate cyclase
Tpau_0170	SM01110	Tpau_0170
Tpau_0171	SM01110	Tpau_0171
Tpau_0175	SM00823	Phosphopantetheine attachment site
Tpau_0175	SM00825	Beta-ketoacyl synthase
Tpau_0175	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_0178	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Tpau_0184	SM00420	helix_turn_helix, Deoxyribose operon repressor
Tpau_0184	SM01134	Tpau_0184
Tpau_0190	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0191	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
Tpau_0191	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
Tpau_0196	SM00014	Acid phosphatase homologues
Tpau_0196	SM00046	Diacylglycerol kinase catalytic domain (presumed)
Tpau_0200	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0202	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
Tpau_0211	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0212	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Tpau_0217	SM00382	ATPases associated with a variety of cellular activities
Tpau_0245	SM00382	ATPases associated with a variety of cellular activities
Tpau_0246	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_0270	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
Tpau_0285	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0309	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0317	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_0335	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_0339	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_0345	SM01012	Tpau_0345
Tpau_0347	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
Tpau_0351	SM00267	diguanylate cyclase
Tpau_0354	SM00421	helix_turn_helix, Lux Regulon
Tpau_0354	SM00448	cheY-homologous receiver domain
Tpau_0390	SM00507	HNH nucleases
Tpau_0394	SM00382	ATPases associated with a variety of cellular activities
Tpau_0396	SM00382	ATPases associated with a variety of cellular activities
Tpau_0406	SM00448	cheY-homologous receiver domain
Tpau_0407	SM00387	Histidine kinase-like ATPases
Tpau_0408	SM00829	Enoylreductase
Tpau_0409	SM00849	Metallo-beta-lactamase superfamily
Tpau_0427	SM00822	Tpau_0427
Tpau_0429	SM00881	CoA binding domain
Tpau_0436	SM00518	AP endonuclease family 2
Tpau_0449	SM01060	Tpau_0449
Tpau_0455	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
Tpau_0479	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_0488	SM00271	DnaJ molecular chaperone homology domain
Tpau_0489	SM00422	helix_turn_helix, mercury resistance
Tpau_0494	SM00382	ATPases associated with a variety of cellular activities
Tpau_0494	SM01086	C-terminal, D2-small domain, of ClpB protein
Tpau_0507	SM00382	ATPases associated with a variety of cellular activities
Tpau_0510	SM00290	Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger
Tpau_0517	SM00788	Adenylosuccinate synthetase
Tpau_0520	SM00448	cheY-homologous receiver domain
Tpau_0520	SM00862	Transcriptional regulatory protein, C terminal
Tpau_0521	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_0521	SM00387	Histidine kinase-like ATPases
Tpau_0521	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_0528	SM00650	Ribosomal RNA adenine dimethylases
Tpau_0535	SM00450	Rhodanese Homology Domain
Tpau_0538	SM00507	HNH nucleases
Tpau_0549	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0559	SM00382	ATPases associated with a variety of cellular activities
Tpau_0562	SM00905	Dihydroneopterin aldolase
Tpau_0573	SM00382	ATPases associated with a variety of cellular activities
Tpau_0573	SM01086	C-terminal, D2-small domain, of ClpB protein
Tpau_0576	SM00903	Flavin reductase like domain
Tpau_0588	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
Tpau_0588	SM01232	Tpau_0588
Tpau_0589	SM00822	Tpau_0589
Tpau_0595	SM00478	endonuclease III
Tpau_0595	SM00525	Tpau_0595
Tpau_0596	SM00947	Carbonic anhydrase
Tpau_0599	SM00382	ATPases associated with a variety of cellular activities
Tpau_0601	SM01058	CarD-like/TRCF domain
Tpau_0605	SM00840	Tpau_0605
Tpau_0606	SM00967	RNA 2'-O ribose methyltransferase substrate binding
Tpau_0610	SM00382	ATPases associated with a variety of cellular activities
Tpau_0620	SM00882	Coenzyme A transferase
Tpau_0621	SM00882	Coenzyme A transferase
Tpau_0622	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_0625	SM00860	SMI1 / KNR4 family
Tpau_0636	SM00422	helix_turn_helix, mercury resistance
Tpau_0639	SM00382	ATPases associated with a variety of cellular activities
Tpau_0646	SM00382	ATPases associated with a variety of cellular activities
Tpau_0647	SM00421	helix_turn_helix, Lux Regulon
Tpau_0647	SM00448	cheY-homologous receiver domain
Tpau_0651	SM00855	Phosphoglycerate mutase family
Tpau_0653	SM00387	Histidine kinase-like ATPases
Tpau_0653	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_0654	SM00448	cheY-homologous receiver domain
Tpau_0654	SM00862	Transcriptional regulatory protein, C terminal
Tpau_0662	SM01155	Tpau_0662
Tpau_0664	SM00563	Phosphate acyltransferases
Tpau_0670	SM01004	Delta-aminolevulinic acid dehydratase
Tpau_0675	SM01118	Tpau_0675
Tpau_0688	SM00855	Phosphoglycerate mutase family
Tpau_0696	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0700	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0709	SM00240	Forkhead associated domain
Tpau_0709	SM00862	Transcriptional regulatory protein, C terminal
Tpau_0709	SM01043	Bacterial transcriptional activator domain
Tpau_0716	SM00507	HNH nucleases
Tpau_0718	SM00135	Low-density lipoprotein-receptor YWTD domain
Tpau_0720	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Tpau_0728	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0741	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
Tpau_0742	SM00649	Ribosomal protein L11/L12
Tpau_0752	SM00382	ATPases associated with a variety of cellular activities
Tpau_0754	SM00663	RNA polymerase I subunit A N-terminus
Tpau_0760	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Tpau_0761	SM00822	Tpau_0761
Tpau_0763	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_0763	SM00895	Tpau_0763
Tpau_0770	SM00487	DEAD-like helicases superfamily
Tpau_0770	SM00490	helicase superfamily c-terminal domain
Tpau_0777	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0779	SM01120	Tpau_0779
Tpau_0780	SM00855	Phosphoglycerate mutase family
Tpau_0783	SM00363	S4 RNA-binding domain
Tpau_0784	SM00849	Metallo-beta-lactamase superfamily
Tpau_0786	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Tpau_0786	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_0788	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_0790	SM00062	Bacterial periplasmic substrate-binding proteins
Tpau_0791	SM00382	ATPases associated with a variety of cellular activities
Tpau_0801	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_0801	SM00866	Tpau_0801
Tpau_0807	SM00507	HNH nucleases
Tpau_0809	SM00487	DEAD-like helicases superfamily
Tpau_0809	SM00490	helicase superfamily c-terminal domain
Tpau_0818	SM00852	Probable molybdopterin binding domain
Tpau_0823	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_0825	SM00357	Cold shock protein domain
Tpau_0831	SM00014	Acid phosphatase homologues
Tpau_0833	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0837	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_0865	SM00382	ATPases associated with a variety of cellular activities
Tpau_0878	SM01005	Alanine racemase, C-terminal domain
Tpau_0886	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0889	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_0891	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0894	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_0898	SM00883	Chaperonin 10 Kd subunit
Tpau_0906	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_0906	SM01240	Tpau_0906
Tpau_0907	SM01240	Tpau_0907
Tpau_0915	SM00421	helix_turn_helix, Lux Regulon
Tpau_0915	SM00448	cheY-homologous receiver domain
Tpau_0916	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_0925	SM00093	SERine  Proteinase INhibitors
Tpau_0927	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0932	SM00481	DNA polymerase alpha chain like domain
Tpau_0937	SM00878	Biotin carboxylase C-terminal domain
Tpau_0953	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_0960	SM00382	ATPases associated with a variety of cellular activities
Tpau_0969	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
Tpau_0972	SM00421	helix_turn_helix, Lux Regulon
Tpau_0972	SM00448	cheY-homologous receiver domain
Tpau_0975	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_0995	SM00420	helix_turn_helix, Deoxyribose operon repressor
Tpau_0995	SM01134	Tpau_0995
Tpau_0998	SM01038	Beta galactosidase small chain
Tpau_1002	SM00382	ATPases associated with a variety of cellular activities
Tpau_1009	SM00421	helix_turn_helix, Lux Regulon
Tpau_1009	SM00448	cheY-homologous receiver domain
Tpau_1014	SM00382	ATPases associated with a variety of cellular activities
Tpau_1014	SM00487	DEAD-like helicases superfamily
Tpau_1014	SM00490	helicase superfamily c-terminal domain
Tpau_1021	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1025	SM00382	ATPases associated with a variety of cellular activities
Tpau_1031	SM00878	Biotin carboxylase C-terminal domain
Tpau_1034	SM00450	Rhodanese Homology Domain
Tpau_1046	SM00448	cheY-homologous receiver domain
Tpau_1046	SM00862	Transcriptional regulatory protein, C terminal
Tpau_1047	SM00387	Histidine kinase-like ATPases
Tpau_1050	SM01001	AIR carboxylase
Tpau_1053	SM00849	Metallo-beta-lactamase superfamily
Tpau_1069	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Tpau_1076	SM00448	cheY-homologous receiver domain
Tpau_1076	SM00862	Transcriptional regulatory protein, C terminal
Tpau_1077	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_1077	SM00387	Histidine kinase-like ATPases
Tpau_1077	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_1078	SM00909	Sporulation and spore germination
Tpau_1081	SM00957	SecA DEAD-like domain
Tpau_1081	SM00958	SecA preprotein cross-linking domain
Tpau_1082	SM00563	Phosphate acyltransferases
Tpau_1099	SM00422	helix_turn_helix, mercury resistance
Tpau_1101	SM00020	Trypsin-like serine protease
Tpau_1104	SM00822	Tpau_1104
Tpau_1109	SM00387	Histidine kinase-like ATPases
Tpau_1111	SM00046	Diacylglycerol kinase catalytic domain (presumed)
Tpau_1113	SM00855	Phosphoglycerate mutase family
Tpau_1118	SM00487	DEAD-like helicases superfamily
Tpau_1118	SM00490	helicase superfamily c-terminal domain
Tpau_1123	SM00450	Rhodanese Homology Domain
Tpau_1140	SM00507	HNH nucleases
Tpau_1144	SM00838	Elongation factor G C-terminus
Tpau_1148	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_1159	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_1159	SM00924	MgtE intracellular N domain
Tpau_1167	SM00422	helix_turn_helix, mercury resistance
Tpau_1176	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_1192	SM00996	S-adenosyl-L-homocysteine hydrolase
Tpau_1192	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Tpau_1195	SM00924	MgtE intracellular N domain
Tpau_1202	SM00382	ATPases associated with a variety of cellular activities
Tpau_1209	SM00822	Tpau_1209
Tpau_1211	SM00861	Transketolase, pyrimidine binding domain
Tpau_1215	SM00487	DEAD-like helicases superfamily
Tpau_1215	SM00490	helicase superfamily c-terminal domain
Tpau_1228	SM00836	DALR anticodon binding domain
Tpau_1228	SM01016	Arginyl tRNA synthetase N terminal dom
Tpau_1233	SM00357	Cold shock protein domain
Tpau_1233	SM00382	ATPases associated with a variety of cellular activities
Tpau_1233	SM00959	Rho termination factor, N-terminal domain
Tpau_1234	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_1236	SM00937	Tpau_1236
Tpau_1255	SM00382	ATPases associated with a variety of cellular activities
Tpau_1277	SM00849	Metallo-beta-lactamase superfamily
Tpau_1278	SM00642	Alpha-amylase domain
Tpau_1279	SM00642	Alpha-amylase domain
Tpau_1280	SM00487	DEAD-like helicases superfamily
Tpau_1280	SM00491	Tpau_1280
Tpau_1289	SM00232	JAB/MPN domain
Tpau_1305	SM00487	DEAD-like helicases superfamily
Tpau_1305	SM00490	helicase superfamily c-terminal domain
Tpau_1315	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_1317	SM00878	Biotin carboxylase C-terminal domain
Tpau_1320	SM00422	helix_turn_helix, mercury resistance
Tpau_1336	SM00382	ATPases associated with a variety of cellular activities
Tpau_1337	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_1339	SM00479	Tpau_1339
Tpau_1341	SM00822	Tpau_1341
Tpau_1348	SM00758	Tpau_1348
Tpau_1350	SM00387	Histidine kinase-like ATPases
Tpau_1351	SM00448	cheY-homologous receiver domain
Tpau_1354	SM00422	helix_turn_helix, mercury resistance
Tpau_1356	SM00382	ATPases associated with a variety of cellular activities
Tpau_1356	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
Tpau_1360	SM00382	ATPases associated with a variety of cellular activities
Tpau_1364	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_1364	SM00866	Tpau_1364
Tpau_1373	SM00823	Phosphopantetheine attachment site
Tpau_1377	SM00862	Transcriptional regulatory protein, C terminal
Tpau_1381	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Tpau_1382	SM00829	Enoylreductase
Tpau_1384	SM00382	ATPases associated with a variety of cellular activities
Tpau_1388	SM00422	helix_turn_helix, mercury resistance
Tpau_1390	SM00642	Alpha-amylase domain
Tpau_1392	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Tpau_1392	SM00091	PAS domain
Tpau_1392	SM00267	diguanylate cyclase
Tpau_1393	SM00507	HNH nucleases
Tpau_1402	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
Tpau_1402	SM01232	Tpau_1402
Tpau_1403	SM01110	Tpau_1403
Tpau_1410	SM00421	helix_turn_helix, Lux Regulon
Tpau_1410	SM00448	cheY-homologous receiver domain
Tpau_1418	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1420	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_1424	SM00857	Resolvase, N terminal domain
Tpau_1426	SM00943	Bifunctional DNA primase/polymerase, N-terminal
Tpau_1436	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1451	SM00382	ATPases associated with a variety of cellular activities
Tpau_1453	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1463	SM00382	ATPases associated with a variety of cellular activities
Tpau_1463	SM00994	ClpX C4-type zinc finger
Tpau_1463	SM01086	C-terminal, D2-small domain, of ClpB protein
Tpau_1465	SM00382	ATPases associated with a variety of cellular activities
Tpau_1471	SM00562	Tpau_1471
Tpau_1472	SM00316	Ribosomal protein S1-like RNA-binding domain
Tpau_1476	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
Tpau_1480	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1481	SM01217	Tpau_1481
Tpau_1489	SM00955	Tpau_1489
Tpau_1490	SM01110	Tpau_1490
Tpau_1491	SM00880	Tpau_1491
Tpau_1491	SM01118	Tpau_1491
Tpau_1497	SM01230	Tpau_1497
Tpau_1507	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_1508	SM00829	Enoylreductase
Tpau_1510	SM01230	Tpau_1510
Tpau_1513	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_1519	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_1534	SM00422	helix_turn_helix, mercury resistance
Tpau_1553	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_1567	SM00358	Double-stranded RNA binding motif
Tpau_1567	SM00535	Ribonuclease III family
Tpau_1568	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
Tpau_1568	SM01232	Tpau_1568
Tpau_1587	SM00968	SMC proteins Flexible Hinge Domain
Tpau_1594	SM00796	Allophanate hydrolase subunit 1
Tpau_1594	SM00797	Allophanate hydrolase subunit 2
Tpau_1596	SM01350	Tpau_1596
Tpau_1601	SM00382	ATPases associated with a variety of cellular activities
Tpau_1607	SM00382	ATPases associated with a variety of cellular activities
Tpau_1607	SM00962	SRP54-type protein, GTPase domain
Tpau_1607	SM00963	SRP54-type protein, helical bundle domain
Tpau_1609	SM00938	Nitrogen regulatory protein P-II
Tpau_1610	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Tpau_1611	SM00382	ATPases associated with a variety of cellular activities
Tpau_1611	SM00962	SRP54-type protein, GTPase domain
Tpau_1611	SM00963	SRP54-type protein, helical bundle domain
Tpau_1614	SM00422	helix_turn_helix, mercury resistance
Tpau_1622	SM00448	cheY-homologous receiver domain
Tpau_1622	SM00862	Transcriptional regulatory protein, C terminal
Tpau_1623	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_1623	SM00387	Histidine kinase-like ATPases
Tpau_1623	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_1628	SM00316	Ribosomal protein S1-like RNA-binding domain
Tpau_1628	SM00732	Likely ribonuclease with RNase H fold.
Tpau_1636	SM00382	ATPases associated with a variety of cellular activities
Tpau_1642	SM00382	ATPases associated with a variety of cellular activities
Tpau_1652	SM00382	ATPases associated with a variety of cellular activities
Tpau_1652	SM00930	Tpau_1652
Tpau_1661	SM00829	Enoylreductase
Tpau_1671	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_1683	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
Tpau_1700	SM00327	von Willebrand factor (vWF) type A domain
Tpau_1700	SM00382	ATPases associated with a variety of cellular activities
Tpau_1708	SM00507	HNH nucleases
Tpau_1713	SM00316	Ribosomal protein S1-like RNA-binding domain
Tpau_1722	SM00834	Putative regulatory protein
Tpau_1723	SM00507	HNH nucleases
Tpau_1732	SM00419	helix_turn_helix, cAMP Regulatory protein
Tpau_1732	SM00529	Helix-turn-helix diphteria tox regulatory element
Tpau_1732	SM00899	Tpau_1732
Tpau_1733	SM00904	Riboflavin kinase
Tpau_1734	SM01387	Tpau_1734
Tpau_1738	SM00316	Ribosomal protein S1-like RNA-binding domain
Tpau_1738	SM00322	K homology RNA-binding domain
Tpau_1742	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_1743	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
Tpau_1743	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
Tpau_1744	SM00344	helix_turn_helix ASNC type
Tpau_1752	SM00382	ATPases associated with a variety of cellular activities
Tpau_1753	SM00028	Tetratricopeptide repeats
Tpau_1759	SM00507	HNH nucleases
Tpau_1762	SM01130	Tpau_1762
Tpau_1763	SM00849	Metallo-beta-lactamase superfamily
Tpau_1771	SM00843	Tpau_1771
Tpau_1777	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_1785	SM00382	ATPases associated with a variety of cellular activities
Tpau_1790	SM00062	Bacterial periplasmic substrate-binding proteins
Tpau_1791	SM00382	ATPases associated with a variety of cellular activities
Tpau_1793	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_1795	SM00382	ATPases associated with a variety of cellular activities
Tpau_1811	SM00382	ATPases associated with a variety of cellular activities
Tpau_1811	SM00487	DEAD-like helicases superfamily
Tpau_1811	SM00490	helicase superfamily c-terminal domain
Tpau_1811	SM00847	Helicase associated domain (HA2)  Add an annotation
Tpau_1821	SM00487	DEAD-like helicases superfamily
Tpau_1821	SM00490	helicase superfamily c-terminal domain
Tpau_1826	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_1831	SM00529	Helix-turn-helix diphteria tox regulatory element
Tpau_1831	SM00899	Tpau_1831
Tpau_1833	SM00881	CoA binding domain
Tpau_1839	SM00382	ATPases associated with a variety of cellular activities
Tpau_1839	SM00487	DEAD-like helicases superfamily
Tpau_1855	SM00829	Enoylreductase
Tpau_1857	SM00822	Tpau_1857
Tpau_1872	SM00878	Biotin carboxylase C-terminal domain
Tpau_1874	SM00421	helix_turn_helix, Lux Regulon
Tpau_1874	SM00448	cheY-homologous receiver domain
Tpau_1889	SM00861	Transketolase, pyrimidine binding domain
Tpau_1890	SM00341	Helicase and RNase D C-terminal
Tpau_1890	SM00474	3'-5' exonuclease
Tpau_1919	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
Tpau_1928	SM00331	Sigma factor PP2C-like phosphatases
Tpau_1928	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
Tpau_1936	SM00382	ATPases associated with a variety of cellular activities
Tpau_1940	SM00487	DEAD-like helicases superfamily
Tpau_1940	SM00490	helicase superfamily c-terminal domain
Tpau_1941	SM01323	Tpau_1941
Tpau_1945	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Tpau_1945	SM00954	Region found in RelA / SpoT proteins
Tpau_1949	SM00849	Metallo-beta-lactamase superfamily
Tpau_1953	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_1955	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Tpau_1959	SM00046	Diacylglycerol kinase catalytic domain (presumed)
Tpau_1966	SM00460	Transglutaminase/protease-like homologues
Tpau_1967	SM00382	ATPases associated with a variety of cellular activities
Tpau_1968	SM00382	ATPases associated with a variety of cellular activities
Tpau_1972	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_1974	SM00382	ATPases associated with a variety of cellular activities
Tpau_1975	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
Tpau_1976	SM00732	Likely ribonuclease with RNase H fold.
Tpau_1986	SM00062	Bacterial periplasmic substrate-binding proteins
Tpau_1987	SM00382	ATPases associated with a variety of cellular activities
Tpau_1989	SM00421	helix_turn_helix, Lux Regulon
Tpau_1989	SM00448	cheY-homologous receiver domain
Tpau_2001	SM00014	Acid phosphatase homologues
Tpau_2002	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_2002	SM00876	Biotin and Thiamin Synthesis associated domain
Tpau_2015	SM00448	cheY-homologous receiver domain
Tpau_2015	SM00862	Transcriptional regulatory protein, C terminal
Tpau_2016	SM00387	Histidine kinase-like ATPases
Tpau_2016	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_2018	SM00829	Enoylreductase
Tpau_2020	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2021	SM00563	Phosphate acyltransferases
Tpau_2032	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_2035	SM00881	CoA binding domain
Tpau_2049	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_2049	SM00866	Tpau_2049
Tpau_2050	SM00062	Bacterial periplasmic substrate-binding proteins
Tpau_2051	SM00382	ATPases associated with a variety of cellular activities
Tpau_2056	SM00267	diguanylate cyclase
Tpau_2057	SM00267	diguanylate cyclase
Tpau_2058	SM00267	diguanylate cyclase
Tpau_2059	SM00382	ATPases associated with a variety of cellular activities
Tpau_2072	SM00382	ATPases associated with a variety of cellular activities
Tpau_2080	SM00327	von Willebrand factor (vWF) type A domain
Tpau_2081	SM00822	Tpau_2081
Tpau_2091	SM00244	prohibitin homologues
Tpau_2098	SM00382	ATPases associated with a variety of cellular activities
Tpau_2101	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_2101	SM00866	Tpau_2101
Tpau_2112	SM00052	Putative diguanylate phosphodiesterase
Tpau_2112	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Tpau_2112	SM00091	PAS domain
Tpau_2112	SM00267	diguanylate cyclase
Tpau_2135	SM01130	Tpau_2135
Tpau_2136	SM00872	Alpha mannosidase, middle domain
Tpau_2137	SM00855	Phosphoglycerate mutase family
Tpau_2144	SM01018	B12 binding domain
Tpau_2153	SM00382	ATPases associated with a variety of cellular activities
Tpau_2154	SM00240	Forkhead associated domain
Tpau_2154	SM00382	ATPases associated with a variety of cellular activities
Tpau_2171	SM00487	DEAD-like helicases superfamily
Tpau_2171	SM00490	helicase superfamily c-terminal domain
Tpau_2171	SM01142	Tpau_2171
Tpau_2173	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
Tpau_2173	SM00475	5'-3' exonuclease
Tpau_2182	SM00422	helix_turn_helix, mercury resistance
Tpau_2188	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_2216	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_2216	SM00895	Tpau_2216
Tpau_2218	SM00756	Tpau_2218
Tpau_2219	SM00382	ATPases associated with a variety of cellular activities
Tpau_2224	SM00135	Low-density lipoprotein-receptor YWTD domain
Tpau_2230	SM00822	Tpau_2230
Tpau_2232	SM00226	Low molecular weight phosphatase family
Tpau_2235	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_2253	SM00633	Glycosyl hydrolase family 10
Tpau_2257	SM00822	Tpau_2257
Tpau_2263	SM00422	helix_turn_helix, mercury resistance
Tpau_2263	SM00871	Bacterial transcription activator, effector binding domain
Tpau_2286	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_2293	SM00507	HNH nucleases
Tpau_2294	SM00382	ATPases associated with a variety of cellular activities
Tpau_2304	SM00382	ATPases associated with a variety of cellular activities
Tpau_2316	SM01240	Tpau_2316
Tpau_2317	SM01091	Transporter associated domain
Tpau_2322	SM00382	ATPases associated with a variety of cellular activities
Tpau_2327	SM00382	ATPases associated with a variety of cellular activities
Tpau_2336	SM00422	helix_turn_helix, mercury resistance
Tpau_2338	SM00422	helix_turn_helix, mercury resistance
Tpau_2339	SM00240	Forkhead associated domain
Tpau_2342	SM00487	DEAD-like helicases superfamily
Tpau_2342	SM00957	SecA DEAD-like domain
Tpau_2342	SM00958	SecA preprotein cross-linking domain
Tpau_2347	SM00852	Probable molybdopterin binding domain
Tpau_2369	SM00382	ATPases associated with a variety of cellular activities
Tpau_2371	SM00363	S4 RNA-binding domain
Tpau_2383	SM00363	S4 RNA-binding domain
Tpau_2391	SM00829	Enoylreductase
Tpau_2393	SM00382	ATPases associated with a variety of cellular activities
Tpau_2403	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Tpau_2408	SM00873	B3/4 domain
Tpau_2408	SM00874	tRNA synthetase B5 domain
Tpau_2408	SM00896	Ferredoxin-fold anticodon binding domain
Tpau_2414	SM00421	helix_turn_helix, Lux Regulon
Tpau_2414	SM00448	cheY-homologous receiver domain
Tpau_2415	SM00967	RNA 2'-O ribose methyltransferase substrate binding
Tpau_2423	SM00849	Metallo-beta-lactamase superfamily
Tpau_2427	SM00487	DEAD-like helicases superfamily
Tpau_2427	SM00490	helicase superfamily c-terminal domain
Tpau_2435	SM00316	Ribosomal protein S1-like RNA-binding domain
Tpau_2441	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_2445	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
Tpau_2445	SM00474	3'-5' exonuclease
Tpau_2445	SM00475	5'-3' exonuclease
Tpau_2445	SM00482	DNA polymerase A domain
Tpau_2451	SM00422	helix_turn_helix, mercury resistance
Tpau_2451	SM00567	E-Z type HEAT repeats
Tpau_2458	SM00422	helix_turn_helix, mercury resistance
Tpau_2463	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2468	SM00825	Beta-ketoacyl synthase
Tpau_2470	SM00507	HNH nucleases
Tpau_2483	SM00448	cheY-homologous receiver domain
Tpau_2483	SM01012	Tpau_2483
Tpau_2487	SM00382	ATPases associated with a variety of cellular activities
Tpau_2494	SM00421	helix_turn_helix, Lux Regulon
Tpau_2494	SM00448	cheY-homologous receiver domain
Tpau_2497	SM00108	Bulb-type mannose-specific lectin
Tpau_2497	SM00257	Lysin motif
Tpau_2501	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_2502	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2507	SM00382	ATPases associated with a variety of cellular activities
Tpau_2512	SM00382	ATPases associated with a variety of cellular activities
Tpau_2517	SM00829	Enoylreductase
Tpau_2522	SM00861	Transketolase, pyrimidine binding domain
Tpau_2534	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_2540	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Tpau_2550	SM00278	Helix-hairpin-helix DNA-binding motif class 1
Tpau_2550	SM00465	GIY-YIG type nucleases (URI domain)
Tpau_2554	SM00382	ATPases associated with a variety of cellular activities
Tpau_2577	SM01409	Tpau_2577
Tpau_2578	SM00072	Guanylate kinase homologues.
Tpau_2580	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
Tpau_2581	SM00851	MGS-like domain
Tpau_2581	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
Tpau_2582	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
Tpau_2590	SM00841	Elongation factor P, C-terminal
Tpau_2590	SM01185	Tpau_2590
Tpau_2592	SM00867	YceI-like domain 
Tpau_2594	SM00421	helix_turn_helix, Lux Regulon
Tpau_2620	SM00481	DNA polymerase alpha chain like domain
Tpau_2621	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_2622	SM00382	ATPases associated with a variety of cellular activities
Tpau_2631	SM00870	Tpau_2631
Tpau_2643	SM00864	Tubulin/FtsZ family, GTPase domain
Tpau_2643	SM00865	Tubulin/FtsZ family, C-terminal domain
Tpau_2666	SM00382	ATPases associated with a variety of cellular activities
Tpau_2669	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_2669	SM00740	Tpau_2669
Tpau_2670	SM00954	Region found in RelA / SpoT proteins
Tpau_2674	SM00563	Phosphate acyltransferases
Tpau_2686	SM00465	GIY-YIG type nucleases (URI domain)
Tpau_2686	SM00479	Tpau_2686
Tpau_2700	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Tpau_2708	SM00382	ATPases associated with a variety of cellular activities
Tpau_2710	SM00855	Phosphoglycerate mutase family
Tpau_2713	SM00226	Low molecular weight phosphatase family
Tpau_2724	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_2726	SM00825	Beta-ketoacyl synthase
Tpau_2731	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2734	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Tpau_2739	SM00400	zinc finger
Tpau_2739	SM00493	Tpau_2739
Tpau_2739	SM00766	DNA primase DnaG DnaB-binding
Tpau_2740	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Tpau_2741	SM00357	Cold shock protein domain
Tpau_2744	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_2751	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_2753	SM00829	Enoylreductase
Tpau_2760	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_2760	SM01091	Transporter associated domain
Tpau_2765	SM00271	DnaJ molecular chaperone homology domain
Tpau_2770	SM00729	Elongator protein 3, MiaB family, Radical SAM
Tpau_2777	SM00382	ATPases associated with a variety of cellular activities
Tpau_2790	SM00838	Elongation factor G C-terminus
Tpau_2797	SM00460	Transglutaminase/protease-like homologues
Tpau_2803	SM00278	Helix-hairpin-helix DNA-binding motif class 1
Tpau_2806	SM00855	Phosphoglycerate mutase family
Tpau_2810	SM00382	ATPases associated with a variety of cellular activities
Tpau_2819	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_2829	SM00878	Biotin carboxylase C-terminal domain
Tpau_2833	SM00487	DEAD-like helicases superfamily
Tpau_2833	SM00490	helicase superfamily c-terminal domain
Tpau_2834	SM01120	Tpau_2834
Tpau_2834	SM01121	Tpau_2834
Tpau_2838	SM00986	Uracil DNA glycosylase superfamily
Tpau_2838	SM00987	UreE urease accessory protein, C-terminal domain 
Tpau_2845	SM00855	Phosphoglycerate mutase family
Tpau_2846	SM00411	bacterial (prokaryotic) histone like domain
Tpau_2849	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_2855	SM01329	Tpau_2855
Tpau_2869	SM00845	GatB domain
Tpau_2872	SM00421	helix_turn_helix, Lux Regulon
Tpau_2872	SM00448	cheY-homologous receiver domain
Tpau_2883	SM00829	Enoylreductase
Tpau_2888	SM01230	Tpau_2888
Tpau_2893	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2900	SM00292	breast cancer carboxy-terminal domain
Tpau_2900	SM00532	Ligase N family
Tpau_2911	SM00563	Phosphate acyltransferases
Tpau_2916	SM00893	Electron transfer flavoprotein domain
Tpau_2917	SM00893	Electron transfer flavoprotein domain
Tpau_2928	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_2938	SM00382	ATPases associated with a variety of cellular activities
Tpau_2939	SM00642	Alpha-amylase domain
Tpau_2947	SM00947	Carbonic anhydrase
Tpau_2956	SM00464	Found in ATP-dependent protease La (LON)
Tpau_2968	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Tpau_2975	SM00646	Tpau_2975
Tpau_2976	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Tpau_2977	SM00450	Rhodanese Homology Domain
Tpau_2980	SM00382	ATPases associated with a variety of cellular activities
Tpau_2984	SM00984	UDP binding domain
Tpau_2986	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_2988	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_2996	SM00882	Coenzyme A transferase
Tpau_3007	SM01119	Tpau_3007
Tpau_3009	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_3018	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_3022	SM00382	ATPases associated with a variety of cellular activities
Tpau_3025	SM00937	Tpau_3025
Tpau_3034	SM01266	Tpau_3034
Tpau_3046	SM00341	Helicase and RNase D C-terminal
Tpau_3051	SM00450	Rhodanese Homology Domain
Tpau_3052	SM00507	HNH nucleases
Tpau_3054	SM00382	ATPases associated with a variety of cellular activities
Tpau_3061	SM00354	helix_turn _helix lactose operon repressor
Tpau_3065	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_3067	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_3072	SM00382	ATPases associated with a variety of cellular activities
Tpau_3074	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_3082	SM00422	helix_turn_helix, mercury resistance
Tpau_3088	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_3104	SM00382	ATPases associated with a variety of cellular activities
Tpau_3128	SM00670	Large family of predicted nucleotide-binding domains
Tpau_3136	SM00382	ATPases associated with a variety of cellular activities
Tpau_3152	SM00116	Domain in cystathionine beta-synthase and other proteins.
Tpau_3165	SM01192	Tpau_3165
Tpau_3165	SM01193	Tpau_3165
Tpau_3173	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Tpau_3174	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Tpau_3174	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Tpau_3184	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_3187	SM00507	HNH nucleases
Tpau_3189	SM00487	DEAD-like helicases superfamily
Tpau_3189	SM00490	helicase superfamily c-terminal domain
Tpau_3189	SM00982	Tpau_3189
Tpau_3189	SM01058	CarD-like/TRCF domain
Tpau_3195	SM01400	Tpau_3195
Tpau_3203	SM00382	ATPases associated with a variety of cellular activities
Tpau_3203	SM01086	C-terminal, D2-small domain, of ClpB protein
Tpau_3223	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_3225	SM00382	ATPases associated with a variety of cellular activities
Tpau_3232	SM00650	Ribosomal RNA adenine dimethylases
Tpau_3233	SM01208	Tpau_3233
Tpau_3247	SM00387	Histidine kinase-like ATPases
Tpau_3247	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_3248	SM00448	cheY-homologous receiver domain
Tpau_3248	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3254	SM00344	helix_turn_helix ASNC type
Tpau_3260	SM00563	Phosphate acyltransferases
Tpau_3267	SM00852	Probable molybdopterin binding domain
Tpau_3272	SM00834	Putative regulatory protein
Tpau_3274	SM00858	Tpau_3274
Tpau_3283	SM00852	Probable molybdopterin binding domain
Tpau_3285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_3285	SM00387	Histidine kinase-like ATPases
Tpau_3285	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_3286	SM00448	cheY-homologous receiver domain
Tpau_3286	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3290	SM00833	Cobalamin synthesis protein cobW C-terminal domain
Tpau_3298	SM00327	von Willebrand factor (vWF) type A domain
Tpau_3302	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_3304	SM00798	AICARFT/IMPCHase bienzyme
Tpau_3304	SM00851	MGS-like domain
Tpau_3310	SM00881	CoA binding domain
Tpau_3314	SM00830	Chorismate mutase type II
Tpau_3320	SM00878	Biotin carboxylase C-terminal domain
Tpau_3325	SM00382	ATPases associated with a variety of cellular activities
Tpau_3331	SM00830	Chorismate mutase type II
Tpau_3341	SM00507	HNH nucleases
Tpau_3344	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_3349	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
Tpau_3349	SM01232	Tpau_3349
Tpau_3351	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_3360	SM00327	von Willebrand factor (vWF) type A domain
Tpau_3382	SM00662	RNA polymerases D
Tpau_3383	SM00363	S4 RNA-binding domain
Tpau_3383	SM01390	Tpau_3383
Tpau_3393	SM00422	helix_turn_helix, mercury resistance
Tpau_3420	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
Tpau_3421	SM01374	Tpau_3421
Tpau_3423	SM00382	ATPases associated with a variety of cellular activities
Tpau_3424	SM00487	DEAD-like helicases superfamily
Tpau_3424	SM00490	helicase superfamily c-terminal domain
Tpau_3429	SM00322	K homology RNA-binding domain
Tpau_3432	SM01382	Tpau_3432
Tpau_3432	SM01383	Tpau_3432
Tpau_3436	SM01403	Tpau_3436
Tpau_3448	SM00829	Enoylreductase
Tpau_3467	SM00838	Elongation factor G C-terminus
Tpau_3467	SM00889	Elongation factor G, domain IV
Tpau_3474	SM00829	Enoylreductase
Tpau_3476	SM00822	Tpau_3476
Tpau_3476	SM00823	Phosphopantetheine attachment site
Tpau_3476	SM00824	Thioesterase
Tpau_3476	SM00825	Beta-ketoacyl synthase
Tpau_3476	SM00826	Tpau_3476
Tpau_3476	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_3476	SM01294	Tpau_3476
Tpau_3477	SM00822	Tpau_3477
Tpau_3477	SM00823	Phosphopantetheine attachment site
Tpau_3477	SM00825	Beta-ketoacyl synthase
Tpau_3477	SM00826	Tpau_3477
Tpau_3477	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_3477	SM01294	Tpau_3477
Tpau_3478	SM00822	Tpau_3478
Tpau_3478	SM00823	Phosphopantetheine attachment site
Tpau_3478	SM00825	Beta-ketoacyl synthase
Tpau_3478	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_3478	SM01294	Tpau_3478
Tpau_3479	SM00823	Phosphopantetheine attachment site
Tpau_3479	SM00825	Beta-ketoacyl synthase
Tpau_3479	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_3479	SM01294	Tpau_3479
Tpau_3480	SM00822	Tpau_3480
Tpau_3480	SM00823	Phosphopantetheine attachment site
Tpau_3480	SM00825	Beta-ketoacyl synthase
Tpau_3480	SM00826	Tpau_3480
Tpau_3480	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_3480	SM01294	Tpau_3480
Tpau_3488	SM00382	ATPases associated with a variety of cellular activities
Tpau_3497	SM00382	ATPases associated with a variety of cellular activities
Tpau_3507	SM00421	helix_turn_helix, Lux Regulon
Tpau_3507	SM00448	cheY-homologous receiver domain
Tpau_3512	SM00422	helix_turn_helix, mercury resistance
Tpau_3518	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_3518	SM00895	Tpau_3518
Tpau_3520	SM00796	Allophanate hydrolase subunit 1
Tpau_3520	SM00797	Allophanate hydrolase subunit 2
Tpau_3526	SM00382	ATPases associated with a variety of cellular activities
Tpau_3531	SM00382	ATPases associated with a variety of cellular activities
Tpau_3534	SM00421	helix_turn_helix, Lux Regulon
Tpau_3534	SM00448	cheY-homologous receiver domain
Tpau_3540	SM00382	ATPases associated with a variety of cellular activities
Tpau_3545	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3547	SM00450	Rhodanese Homology Domain
Tpau_3553	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3556	SM00382	ATPases associated with a variety of cellular activities
Tpau_3559	SM00354	helix_turn _helix lactose operon repressor
Tpau_3566	SM00382	ATPases associated with a variety of cellular activities
Tpau_3567	SM00382	ATPases associated with a variety of cellular activities
Tpau_3590	SM00267	diguanylate cyclase
Tpau_3596	SM00387	Histidine kinase-like ATPases
Tpau_3597	SM00448	cheY-homologous receiver domain
Tpau_3598	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_3603	SM00382	ATPases associated with a variety of cellular activities
Tpau_3608	SM00822	Tpau_3608
Tpau_3610	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
Tpau_3613	SM01211	Tpau_3613
Tpau_3615	SM00849	Metallo-beta-lactamase superfamily
Tpau_3618	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_3624	SM00998	Adenylosuccinate lyase C-terminus
Tpau_3626	SM01209	Tpau_3626
Tpau_3626	SM01210	Tpau_3626
Tpau_3628	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_3630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_3630	SM00387	Histidine kinase-like ATPases
Tpau_3630	SM00388	His Kinase A (phosphoacceptor) domain
Tpau_3631	SM00448	cheY-homologous receiver domain
Tpau_3631	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3644	SM00460	Transglutaminase/protease-like homologues
Tpau_3653	SM01133	Tpau_3653
Tpau_3655	SM00855	Phosphoglycerate mutase family
Tpau_3659	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_3669	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_3686	SM00822	Tpau_3686
Tpau_3688	SM00382	ATPases associated with a variety of cellular activities
Tpau_3693	SM00823	Phosphopantetheine attachment site
Tpau_3693	SM00824	Thioesterase
Tpau_3699	SM00822	Tpau_3699
Tpau_3700	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_3701	SM00387	Histidine kinase-like ATPases
Tpau_3707	SM00852	Probable molybdopterin binding domain
Tpau_3711	SM00382	ATPases associated with a variety of cellular activities
Tpau_3711	SM01072	Cell division protein 48 (CDC48) domain 2
Tpau_3711	SM01073	Cell division protein 48 (CDC48) N-terminal domain
Tpau_3725	SM00382	ATPases associated with a variety of cellular activities
Tpau_3735	SM00382	ATPases associated with a variety of cellular activities
Tpau_3742	SM00382	ATPases associated with a variety of cellular activities
Tpau_3743	SM00421	helix_turn_helix, Lux Regulon
Tpau_3745	SM00507	HNH nucleases
Tpau_3754	SM00062	Bacterial periplasmic substrate-binding proteins
Tpau_3755	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_3756	SM00382	ATPases associated with a variety of cellular activities
Tpau_3760	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Tpau_3760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_3765	SM00382	ATPases associated with a variety of cellular activities
Tpau_3767	SM00422	helix_turn_helix, mercury resistance
Tpau_3767	SM00871	Bacterial transcription activator, effector binding domain
Tpau_3770	SM00823	Phosphopantetheine attachment site
Tpau_3775	SM00382	ATPases associated with a variety of cellular activities
Tpau_3801	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Tpau_3802	SM00346	helix_turn_helix isocitrate lyase regulation
Tpau_3824	SM00822	Tpau_3824
Tpau_3825	SM00822	Tpau_3825
Tpau_3827	SM00882	Coenzyme A transferase
Tpau_3828	SM00882	Coenzyme A transferase
Tpau_3831	SM00862	Transcriptional regulatory protein, C terminal
Tpau_3842	SM00903	Flavin reductase like domain
Tpau_3863	SM00244	prohibitin homologues
Tpau_3873	SM00220	Serine/Threonine protein kinases, catalytic domain
Tpau_3874	SM00382	ATPases associated with a variety of cellular activities
Tpau_3875	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
Tpau_3875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
Tpau_3876	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
Tpau_3876	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
Tpau_3876	SM00493	Tpau_3876
Tpau_3880	SM00357	Cold shock protein domain
Tpau_3881	SM00487	DEAD-like helicases superfamily
Tpau_3881	SM00490	helicase superfamily c-terminal domain
Tpau_3904	SM00857	Resolvase, N terminal domain
Tpau_3912	SM00382	ATPases associated with a variety of cellular activities
Tpau_3919	SM00382	ATPases associated with a variety of cellular activities
Tpau_3921	SM00986	Uracil DNA glycosylase superfamily
Tpau_3921	SM00987	UreE urease accessory protein, C-terminal domain 
Tpau_3930	SM00478	endonuclease III
Tpau_3930	SM00525	Tpau_3930
Tpau_3932	SM00100	Cyclic nucleotide-monophosphate binding domain
Tpau_3932	SM00419	helix_turn_helix, cAMP Regulatory protein
Tpau_3933	SM00849	Metallo-beta-lactamase superfamily
Tpau_3939	SM00740	Tpau_3939
Tpau_3947	SM00829	Enoylreductase
Tpau_3949	SM00861	Transketolase, pyrimidine binding domain
Tpau_3951	SM00344	helix_turn_helix ASNC type
Tpau_3981	SM00859	Semialdehyde dehydrogenase, NAD binding domain
Tpau_3985	SM00923	MbtH-like protein
Tpau_3987	SM00382	ATPases associated with a variety of cellular activities
Tpau_3987	SM00823	Phosphopantetheine attachment site
Tpau_3987	SM00824	Thioesterase
Tpau_3988	SM00917	LeuA allosteric (dimerisation) domain
Tpau_3990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
Tpau_3993	SM00822	Tpau_3993
Tpau_4008	SM00493	Tpau_4008
Tpau_4010	SM00646	Tpau_4010
Tpau_4016	SM00382	ATPases associated with a variety of cellular activities
Tpau_4018	SM00098	Alkaline phosphatase homologues
Tpau_4032	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
Tpau_4037	SM00344	helix_turn_helix ASNC type
Tpau_4043	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_4056	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
Tpau_4057	SM00862	Transcriptional regulatory protein, C terminal
Tpau_4059	SM00014	Acid phosphatase homologues
Tpau_4074	SM00344	helix_turn_helix ASNC type
Tpau_4079	SM00342	helix_turn_helix, arabinose operon control protein
Tpau_4094	SM00829	Enoylreductase
Tpau_4101	SM00382	ATPases associated with a variety of cellular activities
Tpau_4108	SM00530	Helix-turn-helix XRE-family like proteins 
Tpau_4127	SM00507	HNH nucleases
Tpau_4130	SM00382	ATPases associated with a variety of cellular activities
Tpau_4145	SM00421	helix_turn_helix, Lux Regulon
Tpau_4145	SM00448	cheY-homologous receiver domain
Tpau_4147	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
Tpau_4147	SM00387	Histidine kinase-like ATPases
Tpau_4148	SM00450	Rhodanese Homology Domain
Tpau_4151	SM00382	ATPases associated with a variety of cellular activities
Tpau_4161	SM00822	Tpau_4161
Tpau_4163	SM00422	helix_turn_helix, mercury resistance
Tpau_4163	SM00871	Bacterial transcription activator, effector binding domain
Tpau_4164	SM00382	ATPases associated with a variety of cellular activities
Tpau_4203	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_4205	SM00822	Tpau_4205
Tpau_4211	SM00382	ATPases associated with a variety of cellular activities
Tpau_4218	SM00347	helix_turn_helix multiple antibiotic resistance protein
Tpau_4223	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
Tpau_4234	SM00646	Tpau_4234
Tpau_4236	SM00470	ParB-like nuclease domain
Tpau_4239	SM00393	Putative single-stranded nucleic acids-binding domain
Tpau_4241	SM01234	Tpau_4241
Tpau_4244	SM00752	Horizontally Transferred TransMembrane Domain
Tpau_4273	SM00382	ATPases associated with a variety of cellular activities
Tpau_4307	SM00422	helix_turn_helix, mercury resistance
Tpau_4316	SM00382	ATPases associated with a variety of cellular activities
Tpau_4318	SM00923	MbtH-like protein
Tpau_4319	SM00823	Phosphopantetheine attachment site
Tpau_4320	SM00823	Phosphopantetheine attachment site
Tpau_4321	SM00822	Tpau_4321
Tpau_4321	SM00823	Phosphopantetheine attachment site
Tpau_4321	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
Tpau_4322	SM00825	Beta-ketoacyl synthase
Tpau_4324	SM01006	Siderophore biosynthesis protein domain
Tpau_4326	SM00823	Phosphopantetheine attachment site
Tpau_4329	SM00382	ATPases associated with a variety of cellular activities
