locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Tpau_0001 Tpau_0001 Tpau_0001 190 1662 + chromosomal replication initiator protein DnaA TIGRFAM: chromosomal replication initiator protein DnaA~PFAM: Chromosomal replication initiator DnaA%3B Chromosomal replication initiator DnaA domain~KEGG: mpa:MAP0001 chromosomal replication initiation protein~SMART: Chromosomal replication initiator DnaA domain%3B AAA ATPase gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0001 Tpau_0002 Tpau_0002 Tpau_0002 1699 2532 - conserved hypothetical protein KEGG: msm:MSMEG_4720 hypothetical protein gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0002 Tpau_0003 Tpau_0003 Tpau_0003 2938 4128 + DNA polymerase III%2C beta subunit SMART: DNA polymerase III beta chain~TIGRFAM: DNA polymerase III%2C beta subunit~KEGG: rha:RHA1_ro03667 DNA polymerase III subunit beta~PFAM: DNA polymerase III beta chain gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0003 Tpau_0004 Tpau_0004 Tpau_0004 4169 5053 + 6-phosphogluconate dehydrogenase%2C decarboxylating KEGG: mab:MAB_0003 6-phosphogluconate dehydrogenase- like protein~TIGRFAM: 6-phosphogluconate dehydrogenase%2C decarboxylating~PFAM: 6-phosphogluconate dehydrogenase NAD-binding%3B 6-phosphogluconate dehydrogenase domain protein gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0004 Tpau_0005 Tpau_0005 Tpau_0005 5069 6274 + DNA replication and repair protein RecF TIGRFAM: DNA replication and repair protein RecF~PFAM: SMC domain protein~KEGG: rer:RER_00040 DNA replication and repair protein RecF~SMART: AAA ATPase gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0005 Tpau_0006 Tpau_0006 Tpau_0006 6380 7675 + glycosyl transferase family 28 PFAM: glycosyl transferase family 28~KEGG: fre:Franean1_0073 glycosyl transferase family protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0006 Tpau_0007 Tpau_0007 Tpau_0007 7677 9272 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: nfa:nfa51130 putative transporter~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0007 Tpau_0008 Tpau_0008 Tpau_0008 9357 9899 + protein of unknown function DUF721 PFAM: protein of unknown function DUF721~KEGG: rer:RER_00050 hypothetical protein gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0008 Tpau_0009 Tpau_0009 Tpau_0009 10151 12217 + DNA gyrase%2C B subunit SMART: DNA topoisomerase II%3B ATP-binding region ATPase domain protein~TIGRFAM: DNA gyrase%2C B subunit~KEGG: nfa:nfa60 DNA gyrase subunit B~PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein%3B DNA gyrase subunit B domain protein%3B TOPRIM domain protein%3B ATP-binding region ATPase domain protein gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0009 Tpau_0010 Tpau_0010 Tpau_0010 12278 14791 + DNA gyrase%2C A subunit SMART: DNA gyrase/topoisomerase IV subunit A~TIGRFAM: DNA gyrase%2C A subunit~KEGG: rop:ROP_34970 DNA gyrase subunit A~PFAM: DNA gyrase/topoisomerase IV subunit A%3B DNA gyrase repeat beta-propeller gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0010 Tpau_0011 Tpau_0011 Tpau_0011 14819 15517 + conserved hypothetical protein KEGG: rop:ROP_34980 hypothetical membrane protein gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0011 Tpau_0012 Tpau_0012 Tpau_0012 15745 16197 - hypothetical protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0012 Tpau_0013 Tpau_0013 Tpau_0013 16298 16852 + hypothetical protein KEGG: mbt:JTY_1130 putative membrane glycine and proline rich protein gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0013 Tpau_0014 Tpau_0014 Tpau_0014 16946 17272 + hypothetical protein gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0014 Tpau_0015 Tpau_0015 Tpau_0015 17428 18780 + protein of unknown function DUF21 KEGG: mgi:Mflv_2683 CBS domain-containing protein~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0015 Tpau_0016 Tpau_0016 Tpau_0016 18773 19777 + protein of unknown function DUF21 PFAM: protein of unknown function DUF21%3B CBS domain containing protein~KEGG: rha:RHA1_ro03326 CBS domain-containing protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0016 Tpau_0017 Tpau_0017 Tpau_0017 19774 21666 - hypothetical protein KEGG: msm:MSMEG_2737 PPE family protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0017 Tpau_0018 Tpau_0018 Tpau_0018 21868 22077 + conserved hypothetical protein KEGG: mmi:MMAR_5098 hypothetical protein gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0018 Tpau_0019 Tpau_0019 Tpau_0019 22086 22838 + conserved hypothetical protein KEGG: cai:Caci_5841 hypothetical protein gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0019 Tpau_0020 Tpau_0020 Tpau_0020 22874 23047 + hypothetical protein gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0020 Tpau_0021 Tpau_0021 Tpau_0021 23079 23600 - hypothetical protein KEGG: mjl:Mjls_0009 hypothetical protein gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0021 Tpau_0022 Tpau_0022 Tpau_0022 23704 24237 + Peptidylprolyl isomerase KEGG: msm:MSMEG_0024 peptidyl-prolyl cis-trans isomerase B~PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0022 Tpau_0023 Tpau_0023 Tpau_0023 24555 25049 + NLP/P60 protein PFAM: NLP/P60 protein~KEGG: rop:ROP_08530 NlpC/P60 family protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0023 Tpau_0024 Tpau_0024 Tpau_0024 25056 25457 - hypothetical protein KEGG: sen:SACE_0036 hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0024 Tpau_0025 Tpau_0025 Tpau_0025 25511 25804 - protein of unknown function UPF0233 PFAM: protein of unknown function UPF0233~KEGG: nfa:nfa760 putative septation inhibitor protein gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0025 Tpau_0026 Tpau_0026 Tpau_0026 25886 26527 + glutamine amidotransferase of anthranilate synthase KEGG: rop:ROP_35100 anthranilate synthase component II~TIGRFAM: glutamine amidotransferase of anthranilate synthase~PFAM: glutamine amidotransferase class-I gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0026 Tpau_0027 Tpau_0027 Tpau_0027 26548 28542 - serine/threonine protein kinase with PASTA sensor(s) KEGG: rer:RER_00280 serine/threonine protein kinase PknB~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase%3B PASTA domain containing protein~SMART: serine/threonine protein kinase%3B tyrosine protein kinase%3B PASTA domain containing protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0027 Tpau_0028 Tpau_0028 Tpau_0028 28563 29957 - serine/threonine protein kinase KEGG: nfa:nfa810 putative serine/threonine protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0028 Tpau_0029 Tpau_0029 Tpau_0029 29957 31471 - penicillin-binding protein transpeptidase PFAM: penicillin-binding protein transpeptidase~KEGG: rha:RHA1_ro03698 peptidoglycan glycosyltransferase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0029 Tpau_0030 Tpau_0030 Tpau_0030 31468 32895 - cell cycle protein PFAM: cell cycle protein~KEGG: nfa:nfa830 putative cell division protein gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0030 Tpau_0031 Tpau_0031 Tpau_0031 32892 34325 - protein serine/threonine phosphatase PFAM: Protein phosphatase 2C-like~KEGG: rha:RHA1_ro03700 phosphoprotein phosphatase~SMART: protein phosphatase 2C domain protein gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0031 Tpau_0032 Tpau_0032 Tpau_0032 34322 34786 - FHA domain containing protein KEGG: nfa:nfa850 hypothetical protein~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0032 Tpau_0033 Tpau_0033 Tpau_0033 34883 36169 - FHA domain containing protein KEGG: rer:RER_00340 hypothetical protein~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0033 Tpau_0034 Tpau_0034 Tpau_0034 36682 38145 + L-carnitine dehydratase/bile acid-inducible protein F PFAM: L-carnitine dehydratase/bile acid-inducible protein F~KEGG: mag:amb0722 acyl-CoA transferase/carnitine dehydratase gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0034 Tpau_0035 Tpau_0035 Tpau_0035 38180 38713 - hypothetical protein KEGG: sma:SAV_4901 hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0035 Tpau_0036 Tpau_0036 Tpau_0036 38890 39852 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: mpa:MAP0135 CmaA1~PFAM: Cyclopropane-fatty-acyl-phospholipid synthase%3B Methyltransferase type 11%3B Methyltransferase type 12 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0036 Tpau_0037 Tpau_0037 Tpau_0037 39836 41014 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: car:cauri_2115 permease of the major facilitator superfamily gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0037 Tpau_0038 Tpau_0038 Tpau_0038 40993 41511 - flavoprotein PFAM: flavoprotein~KEGG: fra:Francci3_1816 flavoprotein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0038 Tpau_0039 Tpau_0039 Tpau_0039 41508 42641 - transcriptional regulator%2C XRE family KEGG: saq:Sare_3599 XRE family transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0039 Tpau_0040 Tpau_0040 Tpau_0040 42899 43486 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_5722 TetR family transcriptional regulator gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0040 Tpau_0041 Tpau_0041 Tpau_0041 43676 44668 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: cmi:CMM_0578 putative quinone reductase gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0041 Tpau_0042 Tpau_0042 Tpau_0042 44811 45920 + hypothetical protein KEGG: bpl:BURPS1106A_A1951 membrane-anchored cell surface protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0042 Tpau_0043 Tpau_0043 Tpau_0043 45949 47412 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase~KEGG: mab:MAB_1527 monooxygenase gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0043 Tpau_0044 Tpau_0044 Tpau_0044 47409 48338 - Patatin PFAM: Patatin~KEGG: rer:RER_48540 hypothetical protein gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0044 Tpau_0045 Tpau_0045 Tpau_0045 48335 49228 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: mab:MAB_1526 short chain dehydrogenase gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0045 Tpau_0046 Tpau_0046 Tpau_0046 49326 49955 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_15500 putative TetR family transcriptional regulator gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0046 Tpau_0047 Tpau_0047 Tpau_0047 49962 50105 - hypothetical protein gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0047 Tpau_0048 Tpau_0048 Tpau_0048 50270 51568 + Triacylglycerol lipase KEGG: nfa:nfa54830 putative lipase~PFAM: secretory lipase gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0048 Tpau_0049 Tpau_0049 Tpau_0049 51608 52165 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: rop:ROP_55140 hypothetical protein gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0049 Tpau_0050 Tpau_0050 Tpau_0050 52162 52539 - camphor resistance CrcB protein KEGG: rha:RHA1_ro06412 camphor resistance CrcB protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0050 Tpau_0051 Tpau_0051 Tpau_0051 52536 52976 - camphor resistance protein CrcB KEGG: nca:Noca_2957 camphor resistance protein CrcB gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0051 Tpau_0052 Tpau_0052 Tpau_0052 52982 54580 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~KEGG: rer:RER_13170 glycosyltransferase~PFAM: sugar transferase gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0052 Tpau_0053 Tpau_0053 Tpau_0053 54737 55291 - dTDP-4-dehydrorhamnose 3%2C5-epimerase TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~KEGG: msm:MSMEG_5977 dTDP-4-dehydrorhamnose 3%2C5- epimerase~PFAM: dTDP-4-dehydrorhamnose 35-epimerase related gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0053 Tpau_0054 Tpau_0054 Tpau_0054 55306 56325 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: bbt:BBta_7048 putative O-antigen export system permease protein gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0054 Tpau_0055 Tpau_0055 Tpau_0055 56326 57198 + glucose-1-phosphate thymidylyltransferase KEGG: aau:AAur_3159 glucose-1-phosphate thymidylyltransferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0055 Tpau_0056 Tpau_0056 Tpau_0056 57143 57829 - protein of unknown function DUF1361 PFAM: protein of unknown function DUF1361~KEGG: msm:MSMEG_0492 hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0056 Tpau_0057 Tpau_0057 Tpau_0057 57964 58539 + dTDP-4-dehydrorhamnose 3%2C5-epimerase KEGG: rop:ROP_39590 dTDP-6-deoxy-D-xylo-4-hexulose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 35-epimerase related gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0057 Tpau_0058 Tpau_0058 Tpau_0058 58574 59674 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: mmi:MMAR_4514 glycosyl transferase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0058 Tpau_0059 Tpau_0059 Tpau_0059 59652 60677 - conserved hypothetical protein KEGG: mpa:MAP0961c hypothetical protein gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0059 Tpau_0060 Tpau_0060 Tpau_0060 60674 62644 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1%3B glycosyl transferase family 2~KEGG: mul:MUL_4676 glycosyltransferase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0060 Tpau_0061 Tpau_0061 Tpau_0061 62641 64212 - polysaccharide biosynthesis protein PFAM: polysaccharide biosynthesis protein%3B virulence factor MVIN family protein%3B multi antimicrobial extrusion protein MatE~KEGG: mpa:MAP0963c hypothetical protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0061 Tpau_0062 Tpau_0062 Tpau_0062 64248 65309 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: fre:Franean1_0751 glycosyl transferase group 1 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0062 Tpau_0063 Tpau_0063 Tpau_0063 65269 66063 - glycosyl transferase%2C WecB/TagA/CpsF family KEGG: mmi:MMAR_4502 teichoic acid biosynthesis protein~TIGRFAM: glycosyl transferase%2C WecB/TagA/CpsF family~PFAM: glycosyl transferase WecB/TagA/CpsF gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0063 Tpau_0064 Tpau_0064 Tpau_0064 66371 67345 + hypothetical protein KEGG: ace:Acel_1928 lipopolysaccharide biosynthesis gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0064 Tpau_0065 Tpau_0065 Tpau_0065 67342 68091 + lipopolysaccharide biosynthesis protein PFAM: lipopolysaccharide biosynthesis protein~KEGG: ace:Acel_1928 lipopolysaccharide biosynthesis gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0065 Tpau_0066 Tpau_0066 Tpau_0066 68178 69494 + O-antigen polymerase KEGG: art:Arth_4126 O-antigen polymerase gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0066 Tpau_0067 Tpau_0067 Tpau_0067 69641 70882 + C-methyltransferase PFAM: C-methyltransferase%3B Methyltransferase domain protein%3B Methyltransferase type 12%3B Methyltransferase type 11~KEGG: msm:MSMEG_5980 methyltransferase gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0067 Tpau_0068 Tpau_0068 Tpau_0068 70896 71678 + Glucose-1-phosphate cytidylyltransferase KEGG: sco:SCO0393 transferase gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0068 Tpau_0069 Tpau_0069 Tpau_0069 71675 72328 + LmbE family protein PFAM: LmbE family protein~KEGG: msm:MSMEG_5978 GlcNAc-PI de-N-acetylase family protein gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0069 Tpau_0070 Tpau_0070 Tpau_0070 72325 73341 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4- dehydrorhamnose reductase~KEGG: msm:MSMEG_5976 epimerase/dehydratase gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0070 Tpau_0071 Tpau_0071 Tpau_0071 73344 75797 + aminotransferase class-III PFAM: aminotransferase class-III%3B C- methyltransferase~KEGG: rha:RHA1_ro05728 glutamate-1-semialdehyde 2%2C1- aminomutase gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0071 Tpau_0072 Tpau_0072 Tpau_0072 75862 76335 + conserved hypothetical protein KEGG: rop:ROP_23330 hypothetical membrane protein gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0072 Tpau_0073 Tpau_0073 Tpau_0073 76388 77113 + hypothetical protein KEGG: nfa:nfa11270 hypothetical protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0073 Tpau_0074 Tpau_0074 Tpau_0074 77116 78957 + Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related protein PFAM: Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related~KEGG: mbt:JTY_0106 putative integral membrane protein gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0074 Tpau_0075 Tpau_0075 Tpau_0075 79012 80133 - conserved hypothetical protein KEGG: swi:Swit_0389 hypothetical protein gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0075 Tpau_0076 Tpau_0076 Tpau_0076 80455 82071 + hypothetical protein KEGG: jan:Jann_4243 hypothetical protein gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0076 Tpau_0077 Tpau_0077 Tpau_0077 82495 83697 + glycoside hydrolase family 5 PFAM: glycoside hydrolase family 5~KEGG: psa:PST_2494 endoglucanase precursor(endo-1%2C4- beta-glucanase)protein gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0077 Tpau_0078 Tpau_0078 Tpau_0078 83839 85104 - hypothetical protein KEGG: xop:PXO_03299 endoglucanase gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0078 Tpau_0079 Tpau_0079 Tpau_0079 85384 86559 - glycoside hydrolase family 5 PFAM: glycoside hydrolase family 5~KEGG: xop:PXO_03301 endoglucanase gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0079 Tpau_0080 Tpau_0080 Tpau_0080 86828 87277 + surface-exposed protein KEGG: bgl:bglu_1g24300 surface-exposed protein gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0080 Tpau_0081 Tpau_0081 Tpau_0081 87293 89548 - heavy metal translocating P-type ATPase KEGG: mmi:MMAR_0264 cation transporter p-type ATPase A CtpA~TIGRFAM: heavy metal translocating P-type ATPase%3B copper-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase domain protein hydrolase gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0081 Tpau_0082 Tpau_0082 Tpau_0082 89785 90867 - Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: ami:Amir_0226 alpha/beta hydrolase fold-3 domain protein gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0082 Tpau_0083 Tpau_0083 Tpau_0083 90889 91491 - FMN-binding negative transcriptional regulator PFAM: Negative transcriptional regulator~KEGG: pmy:Pmen_0131 FMN-binding negative transcriptional regulator gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0083 Tpau_0084 Tpau_0084 Tpau_0084 91502 91891 - conserved hypothetical protein KEGG: msm:MSMEG_2697 hypothetical protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0084 Tpau_0085 Tpau_0085 Tpau_0085 92044 92703 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_3479 TetR family transcriptional regulator gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0085 Tpau_0086 Tpau_0086 Tpau_0086 92700 93197 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: tfu:Tfu_0561 putative acetyltransferase gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0086 Tpau_0087 Tpau_0087 Tpau_0087 93197 93838 + cob(II)yrinic acid a%2Cc-diamide reductase KEGG: rer:RER_23360 oxidoreductase~TIGRFAM: cob(II)yrinic acid a%2Cc-diamide reductase~PFAM: nitroreductase gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0087 Tpau_0088 Tpau_0088 Tpau_0088 93866 95221 + ErfK/YbiS/YcfS/YnhG family protein PFAM: ErfK/YbiS/YcfS/YnhG family protein~KEGG: rha:RHA1_ro08338 ErfK/YbiS/YcfS/YnhG family lipoprotein gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0088 Tpau_0089 Tpau_0089 Tpau_0089 95218 96444 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: nfa:nfa38830 putative transporter gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0089 Tpau_0090 Tpau_0090 Tpau_0090 96544 96873 + putative transcriptional regulator%2C ArsR family SMART: regulatory protein ArsR~KEGG: mjl:Mjls_5113 ArsR family transcriptional regulator gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0090 Tpau_0091 Tpau_0091 Tpau_0091 96809 97504 - conserved hypothetical protein KEGG: rha:RHA1_ro03732 hypothetical protein gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0091 Tpau_0092 Tpau_0092 Tpau_0092 97515 98438 - Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related protein PFAM: Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related~KEGG: mva:Mvan_3709 hypothetical protein gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0092 Tpau_0093 Tpau_0093 Tpau_0093 98459 99157 + two component transcriptional regulator%2C winged helix family KEGG: nca:Noca_0312 response regulator receiver~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0093 Tpau_0094 Tpau_0094 Tpau_0094 99157 100284 + integral membrane sensor signal transduction histidine kinase KEGG: mgi:Mflv_3888 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0094 Tpau_0095 Tpau_0095 Tpau_0095 100379 102559 + Carbonate dehydratase KEGG: nfa:pnf1540 putative transporter~PFAM: sulphate transporter%3B carbonic anhydrase%3B Xanthine/uracil/vitamin C permease gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0095 Tpau_0096 Tpau_0096 Tpau_0096 102709 103356 + conserved hypothetical protein KEGG: rer:RER_19470 hypothetical protein gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0096 Tpau_0097 Tpau_0097 Tpau_0097 103328 104035 + two component transcriptional regulator%2C winged helix family KEGG: rer:RER_19460 OmpR family two-component response regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0097 Tpau_0098 Tpau_0098 Tpau_0098 104035 105387 + integral membrane sensor signal transduction histidine kinase KEGG: rer:RER_19450 two-component histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0098 Tpau_0099 Tpau_0099 Tpau_0099 105399 106196 + Glutamate racemase KEGG: sgr:SGR_6566 putative glutamate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0099 Tpau_0100 Tpau_0100 Tpau_0100 106398 107978 - anibiotic ABC transporter efflux pump KEGG: rha:RHA1_ro02954 anibiotic ABC transporter efflux pump gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0100 Tpau_0101 Tpau_0101 Tpau_0101 107975 108874 - ABC transporter related protein KEGG: nfa:nfa24770 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0101 Tpau_0102 Tpau_0102 Tpau_0102 108915 109400 + conserved hypothetical protein KEGG: sco:SCO3632 hypothetical protein gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0102 Tpau_0103 Tpau_0103 Tpau_0103 109597 110211 + hypothetical protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0103 Tpau_0104 Tpau_0104 Tpau_0104 110276 110866 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin~KEGG: bcv:Bcav_2708 peptidase M15B and M15C dd- carboxypeptidase VanY/endolysin gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0104 Tpau_0105 Tpau_0105 Tpau_0105 110968 112128 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: mab:MAB_4743c putative dehydrogenase/reductase gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0105 Tpau_0106 Tpau_0106 Tpau_0106 112155 112748 - conserved hypothetical protein KEGG: mab:MAB_4744c hypothetical protein gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0106 Tpau_0107 Tpau_0107 Tpau_0107 113146 117753 + Glutamate synthase (ferredoxin) KEGG: rop:ROP_35350 glutamate synthase large subunit~PFAM: ferredoxin-dependent glutamate synthase%3B glutamate synthase alpha subunit domain protein%3B glutamate synthase%3B glutamine amidotransferase class-II gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0107 Tpau_0108 Tpau_0108 Tpau_0108 117746 119212 + glutamate synthase%2C NADH/NADPH%2C small subunit KEGG: nfa:nfa970 glutamate synthase subunit beta~TIGRFAM: glutamate synthase%2C NADH/NADPH%2C small subunit~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0108 Tpau_0109 Tpau_0109 Tpau_0109 119269 119781 - Protein of unknown function DUF2302 PFAM: Protein of unknown function DUF2302~KEGG: rer:RER_47870 hypothetical protein gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0109 Tpau_0110 Tpau_0110 Tpau_0110 120144 121070 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rha:RHA1_ro03731 alpha/beta hydrolase gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0110 Tpau_0111 Tpau_0111 Tpau_0111 121306 121866 + conserved hypothetical protein KEGG: mab:MAB_3790 hypothetical protein gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0111 Tpau_0112 Tpau_0112 Tpau_0112 121868 122110 + RNA-binding S4 domain protein PFAM: RNA-binding S4 domain protein~KEGG: mgi:Mflv_3643 RNA-binding S4 domain- containing protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0112 Tpau_0113 Tpau_0113 Tpau_0113 122175 122957 + Isochorismatase KEGG: mab:MAB_4406 isochorismatase/phenazine biosynthesis protein PhzD~PFAM: isochorismatase hydrolase gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0113 Tpau_0114 Tpau_0114 Tpau_0114 122979 123470 - regulator of ribonuclease activity A KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA~TIGRFAM: regulator of ribonuclease activity A~PFAM: Dimethylmenaquinone methyltransferase gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0114 Tpau_0115 Tpau_0115 Tpau_0115 123531 125081 + Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: rha:RHA1_ro03944 succinic semialdehyde dehydrogenase gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0115 Tpau_0116 Tpau_0116 Tpau_0116 125200 125745 + conserved hypothetical protein KEGG: mab:MAB_0800 hypothetical protein gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0116 Tpau_0117 Tpau_0117 Tpau_0117 125702 126616 - GDSL family lipase KEGG: nca:Noca_4490 GDSL family lipase gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0117 Tpau_0118 Tpau_0118 Tpau_0118 126666 127361 - conserved hypothetical protein KEGG: mav:MAV_0179 hypothetical protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0118 Tpau_0119 Tpau_0119 Tpau_0119 127572 129011 + RecB family nuclease%2C putative TIGRFAM: RecB family nuclease%2C putative~KEGG: nfa:nfa1140 hypothetical protein gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0119 Tpau_0120 Tpau_0120 Tpau_0120 129044 130132 - hypothetical protein KEGG: hypothetical protein LOC762216 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0120 Tpau_0121 Tpau_0121 Tpau_0121 130325 130810 + putative transcriptional regulator%2C XRE family KEGG: cai:Caci_8936 hypothetical protein gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0121 Tpau_0122 Tpau_0122 Tpau_0122 130875 131378 + hypothetical protein KEGG: stp:Strop_4198 hypothetical protein gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0122 Tpau_0123 Tpau_0123 Tpau_0123 131375 132481 + hypothetical protein KEGG: svi:Svir_26770 hypothetical protein gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0123 Tpau_0124 Tpau_0124 Tpau_0124 132482 133240 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: rha:RHA1_ro04000 short chain dehydrogenase gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0124 Tpau_0125 Tpau_0125 Tpau_0125 133297 134004 - protein of unknown function UPF0016 PFAM: protein of unknown function UPF0016~KEGG: rha:RHA1_ro04005 hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0125 Tpau_0126 Tpau_0126 Tpau_0126 134490 135092 - Superoxide dismutase KEGG: rer:RER_48670 superoxide dismutase~PFAM: Manganese/iron superoxide dismutase-like gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0126 Tpau_0127 Tpau_0127 Tpau_0127 135231 135434 - hypothetical protein gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0127 Tpau_0128 Tpau_0128 Tpau_0128 135665 136063 + hypothetical protein gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0128 Tpau_0129 Tpau_0129 Tpau_0129 136080 136499 + conserved hypothetical protein KEGG: rer:RER_05160 hypothetical protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0129 Tpau_0130 Tpau_0130 Tpau_0130 136532 137452 + peptidase S49 PFAM: peptidase S49~KEGG: ami:Amir_0066 peptidase S49 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0130 Tpau_0131 Tpau_0131 Tpau_0131 137586 137936 + Rhodanese domain protein KEGG: nfa:nfa1230 hypothetical protein~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0131 Tpau_0132 Tpau_0132 Tpau_0132 137936 138772 + conserved hypothetical protein KEGG: nfa:nfa1240 hypothetical protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0132 Tpau_0133 Tpau_0133 Tpau_0133 138757 139515 + glycerophosphoryl diester phosphodiesterase PFAM: glycerophosphoryl diester phosphodiesterase~KEGG: nfa:nfa1250 putative glycerophosphoryl diester phosphodiesterase gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0133 Tpau_0134 Tpau_0134 Tpau_0134 139530 140426 + conserved hypothetical protein KEGG: rer:RER_01720 hypothetical protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0134 Tpau_0135 Tpau_0135 Tpau_0135 140423 141076 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa33150 putative transcriptional regulator gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0135 Tpau_0136 Tpau_0136 Tpau_0136 141087 142487 - cell envelope-related transcriptional attenuator KEGG: nfa:nfa1290 putative transcriptional regulator~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: cell envelope-related transcriptional attenuator gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0136 Tpau_0137 Tpau_0137 Tpau_0137 142577 143356 - Abortive infection protein PFAM: Abortive infection protein~KEGG: mgi:Mflv_2806 abortive infection protein gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0137 Tpau_0138 Tpau_0138 Tpau_0138 143423 144883 + Xanthine/uracil/vitamin C permease PFAM: Xanthine/uracil/vitamin C permease~KEGG: rer:RER_46260 hypoxanthine/guanine permease gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0138 Tpau_0139 Tpau_0139 Tpau_0139 144880 145698 - hypothetical protein KEGG: mab:MAB_1432 hypothetical protein gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0139 Tpau_0140 Tpau_0140 Tpau_0140 145812 146390 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mmi:MMAR_1611 transcriptional regulatory protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0140 Tpau_0141 Tpau_0141 Tpau_0141 146387 147922 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sav:SAVP032 QacA protein gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0141 Tpau_0142 Tpau_0142 Tpau_0142 147928 148665 - conserved hypothetical protein KEGG: rer:RER_01850 hypothetical protein gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0142 Tpau_0143 Tpau_0143 Tpau_0143 148750 149148 + conserved hypothetical protein KEGG: rer:RER_01860 hypothetical protein gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0143 Tpau_0144 Tpau_0144 Tpau_0144 149152 150135 - hypothetical protein KEGG: mab:MAB_2775c hypothetical protein gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0144 Tpau_0145 Tpau_0145 Tpau_0145 150242 151177 + Prephenate dehydratase KEGG: mjl:Mjls_5415 prephenate dehydratase~PFAM: prephenate dehydratase%3B amino acid-binding ACT domain protein gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0145 Tpau_0146 Tpau_0146 Tpau_0146 151174 151809 + Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: rer:RER_01880 phosphoglycerate mutase gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0146 Tpau_0147 Tpau_0147 Tpau_0147 151806 152153 - protein of unknown function DUF1025 PFAM: protein of unknown function DUF1025~KEGG: mab:MAB_0150c hypothetical protein gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0147 Tpau_0148 Tpau_0148 Tpau_0148 152156 153244 - conserved hypothetical protein KEGG: rop:ROP_39180 hypothetical protein gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0148 Tpau_0149 Tpau_0149 Tpau_0149 153319 154572 + seryl-tRNA synthetase TIGRFAM: seryl-tRNA synthetase~KEGG: mab:MAB_0153 seryl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Seryl- tRNA synthetase%2C class IIa-like gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0149 Tpau_0150 Tpau_0150 Tpau_0150 154581 154928 - hypothetical protein gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0150 Tpau_0151 Tpau_0151 Tpau_0151 155001 155735 - hypothetical protein KEGG: npu:Npun_F0186 hypothetical protein gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0151 Tpau_0152 Tpau_0152 Tpau_0152 155735 156154 - hypothetical protein gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0152 Tpau_0153 Tpau_0153 Tpau_0153 156176 156268 - hypothetical protein gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0153 Tpau_0154 Tpau_0154 Tpau_0154 156355 156942 - hypothetical protein KEGG: rer:RER_00790 hypothetical protein gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0154 Tpau_0155 Tpau_0155 Tpau_0155 156980 158038 - hypothetical protein KEGG: sgr:SGR_4457 hypothetical protein gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0155 Tpau_0156 Tpau_0156 Tpau_0156 158035 159612 - Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: rop:ROP_39230 hypothetical protein gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0156 Tpau_0157 Tpau_0157 Tpau_0157 159698 160468 + phospholipid/glycerol acyltransferase KEGG: mab:MAB_0165 putative acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0157 Tpau_0158 Tpau_0158 Tpau_0158 160461 161294 + Cof-like hydrolase KEGG: mjl:Mjls_5404 Cof-like hydrolase~TIGRFAM: Cof-like hydrolase%3B HAD-superfamily hydrolase%2C subfamily IIB~PFAM: Haloacid dehalogenase domain protein hydrolase type 3%3B Haloacid dehalogenase domain protein hydrolase gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0158 Tpau_0159 Tpau_0159 Tpau_0159 161328 161924 - hypothetical protein gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0159 Tpau_0160 Tpau_0160 Tpau_0160 162462 164669 + SpoIID/LytB domain protein KEGG: rop:ROP_39290 hypothetical protein~TIGRFAM: SpoIID/LytB domain protein~PFAM: Stage II sporulation D domain protein gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0160 Tpau_0161 Tpau_0161 Tpau_0161 164728 165936 + UDP-galactopyranose mutase TIGRFAM: UDP-galactopyranose mutase~KEGG: msm:MSMEG_6404 UDP-galactopyranose mutase~PFAM: UDP-galactopyranose mutase-like gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0161 Tpau_0162 Tpau_0162 Tpau_0162 165933 167888 + putative galactofuranosyltransferase KEGG: nfa:nfa1770 putative galactofuranosyltransferase gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0162 Tpau_0163 Tpau_0163 Tpau_0163 167885 168493 + phosphoesterase PA-phosphatase related protein KEGG: mva:Mvan_5648 phosphoesterase%2C PA-phosphatase related~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0163 Tpau_0164 Tpau_0164 Tpau_0164 168493 169413 + UbiA prenyltransferase PFAM: UbiA prenyltransferase~KEGG: rer:RER_02140 hypothetical protein gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0164 Tpau_0165 Tpau_0165 Tpau_0165 169391 171394 + arabinosyltransferase AftB KEGG: rop:ROP_39350 arabinosyltransferase AftB gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0165 Tpau_0166 Tpau_0166 Tpau_0166 171494 172405 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES domain protein~KEGG: fal:FRAAL1683 putative zinc-binding oxidoreductase gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0166 Tpau_0167 Tpau_0167 Tpau_0167 172554 173516 + diguanylate cyclase with GAF sensor TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein%3B GAF domain protein~KEGG: smd:Smed_3728 diguanylate cyclase~SMART: GGDEF domain containing protein gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0167 Tpau_0168 Tpau_0168 Tpau_0168 173601 175241 + putative esterase PFAM: putative esterase%3B LGFP repeat protein~KEGG: nfa:nfa1840 putative esterase gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0168 Tpau_0169 Tpau_0169 Tpau_0169 175339 175806 + hypothetical protein KEGG: rha:RHA1_ro04061 hypothetical protein gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0169 Tpau_0170 Tpau_0170 Tpau_0170 175813 176817 + conserved hypothetical protein KEGG: nfa:nfa1860 hypothetical protein gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0170 Tpau_0171 Tpau_0171 Tpau_0171 176836 177777 + cutinase precursor KEGG: mab:MAB_0178 cutinase precursor gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0171 Tpau_0172 Tpau_0172 Tpau_0172 177780 178904 - Agmatine deiminase KEGG: mab:MAB_0588c peptidyl-arginine deiminase~PFAM: Porphyromonas-type peptidyl-arginine deiminase gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0172 Tpau_0173 Tpau_0173 Tpau_0173 179298 180278 + putative F420-dependent oxidoreductase KEGG: rop:ROP_39410 putative oxidoreductase~TIGRFAM: probable F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0173 Tpau_0174 Tpau_0174 Tpau_0174 180492 182402 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rop:ROP_39420 long-chain fatty acyl-AMP ligase FadD32 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0174 Tpau_0175 Tpau_0175 Tpau_0175 182483 187597 + Beta-ketoacyl synthase PFAM: Beta-ketoacyl synthase %3B Acyl transferase%3B Thioesterase%3B phosphopantetheine-binding~KEGG: rha:RHA1_ro04065 polyketide synthase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0175 Tpau_0176 Tpau_0176 Tpau_0176 187610 189193 + carboxyl transferase PFAM: carboxyl transferase~KEGG: rha:RHA1_ro04066 propionyl-CoA carboxylase gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0176 Tpau_0177 Tpau_0177 Tpau_0177 189196 190545 + D-lactate dehydrogenase (cytochrome) KEGG: rer:RER_51320 FAD-linked oxidase~PFAM: FAD linked oxidase domain protein gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0177 Tpau_0178 Tpau_0178 Tpau_0178 190740 191225 - putative GAF sensor protein PFAM: GAF domain protein~KEGG: xfn:XfasM23_0503 putative GAF sensor protein gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0178 Tpau_0179 Tpau_0179 Tpau_0179 191588 192571 + putative esterase PFAM: putative esterase~KEGG: rop:ROP_50250 mycolyltransferase gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0179 Tpau_0180 Tpau_0180 Tpau_0180 192884 193849 + putative esterase PFAM: putative esterase~KEGG: rop:ROP_50250 mycolyltransferase gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0180 Tpau_0181 Tpau_0181 Tpau_0181 194055 194900 + HpcH/HpaI aldolase PFAM: HpcH/HpaI aldolase~KEGG: mgi:Mflv_4009 HpcH/HpaI aldolase gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0181 Tpau_0182 Tpau_0182 Tpau_0182 194953 195345 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mjl:Mjls_0601 glyoxalase/bleomycin resistance protein/dioxygenase gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0182 Tpau_0183 Tpau_0183 Tpau_0183 195428 197104 - phosphoenolpyruvate-protein phosphotransferase KEGG: mgi:Mflv_0749 phosphoenolpyruvate-protein phosphotransferase~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilizing protein%3B PEP-utilising protein mobile region%3B PEP-utilising protein domain protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0183 Tpau_0184 Tpau_0184 Tpau_0184 197207 197977 + transcriptional regulator%2C DeoR family KEGG: mjl:Mjls_0072 DeoR family transcriptional regulator~PFAM: regulatory protein DeoR%3B Helix-turn-helix type 11 domain protein~SMART: regulatory protein DeoR gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0184 Tpau_0185 Tpau_0185 Tpau_0185 197974 198945 + 1-phosphofructokinase KEGG: mkm:Mkms_0090 ribokinase-like domain- containing protein~TIGRFAM: 1-phosphofructokinase~PFAM: PfkB domain protein gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0185 Tpau_0186 Tpau_0186 Tpau_0186 198942 200963 + PTS system%2C fructose subfamily%2C IIC subunit KEGG: mkm:Mkms_0089 PTS system%2C fructose subfamily%2C IIC subunit~TIGRFAM: PTS system%2C fructose subfamily%2C IIC subunit%3B PTS system%2C fructose subfamily%2C IIA subunit%3B PTS system%2C fructose-specific%2C IIB subunnit~PFAM: phosphotransferase system PTS fructose- specific IIB subunit%3B phosphotransferase system EIIC%3B phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0186 Tpau_0187 Tpau_0187 Tpau_0187 201026 201283 + Phosphotransferase system%2C phosphocarrier protein HPr KEGG: mjl:Mjls_0069 phosphotransferase system%2C phosphocarrier protein HPr~TIGRFAM: phosphocarrier%2C HPr family~PFAM: phosphoryl transfer system HPr gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0187 Tpau_0188 Tpau_0188 Tpau_0188 201303 201929 - hypothetical protein KEGG: ami:Amir_0454 hypothetical protein gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0188 Tpau_0189 Tpau_0189 Tpau_0189 202037 202954 + D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~KEGG: rer:RER_37880 dehydrogenase gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0189 Tpau_0190 Tpau_0190 Tpau_0190 202954 203472 + transcriptional regulator%2C MarR family KEGG: sma:SAV_1295 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0190 Tpau_0191 Tpau_0191 Tpau_0191 203697 205223 + NAD(P) transhydrogenase%2C alpha subunit KEGG: mva:Mvan_0120 NAD(P) transhydrogenase subunit alpha~TIGRFAM: NAD(P) transhydrogenase%2C alpha subunit~PFAM: alanine dehydrogenase/PNT domain protein gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0191 Tpau_0192 Tpau_0192 Tpau_0192 205225 206646 + NAD(P)(+) transhydrogenase (AB-specific) KEGG: msm:MSMEG_4108 NAD(P) transhydrogenase%2C beta subunit~PFAM: NAD(P) transhydrogenase beta subunit gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0192 Tpau_0193 Tpau_0193 Tpau_0193 206711 207361 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: ach:Achl_2748 NAD-dependent epimerase/dehydratase gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0193 Tpau_0194 Tpau_0194 Tpau_0194 207406 208017 - Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: kra:Krad_4013 lysine exporter protein (LysE/YggA) gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0194 Tpau_0195 Tpau_0195 Tpau_0195 208089 208982 + transcriptional regulator%2C ArgP%2C LysR family KEGG: ach:Achl_0269 transcriptional regulator%2C ArgP%2C LysR family~TIGRFAM: transcriptional regulator%2C ArgP family~PFAM: regulatory protein LysR%3B LysR substrate- binding gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0195 Tpau_0196 Tpau_0196 Tpau_0196 209019 210491 + phosphoesterase PA-phosphatase related protein KEGG: mgi:Mflv_0311 phosphoesterase%2C PA-phosphatase related~PFAM: phosphoesterase PA-phosphatase related%3B diacylglycerol kinase catalytic region~SMART: phosphoesterase PA-phosphatase related%3B diacylglycerol kinase catalytic region gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0196 Tpau_0197 Tpau_0197 Tpau_0197 210488 211297 - hypothetical protein KEGG: mgi:Mflv_0488 hypothetical protein gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0197 Tpau_0198 Tpau_0198 Tpau_0198 211336 212199 - peptidase S58 DmpA PFAM: peptidase S58 DmpA~KEGG: fal:FRAAL5354 hypothetical protein gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0198 Tpau_0199 Tpau_0199 Tpau_0199 212210 212596 - conserved hypothetical protein KEGG: rha:RHA1_ro00326 hypothetical protein gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0199 Tpau_0200 Tpau_0200 Tpau_0200 212597 213076 - transcriptional regulator%2C MarR family KEGG: rer:RER_45540 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0200 Tpau_0201 Tpau_0201 Tpau_0201 213125 215461 - DNA polymerase LigD%2C polymerase domain protein KEGG: mav:MAV_1056 ATP-dependent DNA ligase~TIGRFAM: DNA polymerase LigD%2C polymerase domain protein%3B DNA ligase D%2C 3'-phosphoesterase domain protein%3B DNA polymerase LigD%2C ligase domain protein~PFAM: ATP dependent DNA ligase%3B DNA primase small subunit%3B ATP dependent DNA ligase domain protein%3B mRNA capping enzyme gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0201 Tpau_0202 Tpau_0202 Tpau_0202 215644 216480 + Ku protein TIGRFAM: Ku protein~PFAM: Ku domain protein~KEGG: mav:MAV_1050 Ku protein~SMART: Ku domain protein gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0202 Tpau_0203 Tpau_0203 Tpau_0203 216477 217037 - regulatory protein TetR PFAM: regulatory protein TetR~KEGG: mva:Mvan_1927 TetR family transcriptional regulator gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0203 Tpau_0204 Tpau_0204 Tpau_0204 217064 217945 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B dTDP-4- dehydrorhamnose reductase%3B Male sterility domain~KEGG: acp:A2cp1_1649 NAD-dependent epimerase/dehydratase gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0204 Tpau_0205 Tpau_0205 Tpau_0205 218023 219828 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase%3B condensation domain protein~KEGG: mmi:MMAR_0087 hypothetical protein gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0205 Tpau_0206 Tpau_0206 Tpau_0206 219880 220659 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: mmi:MMAR_0086 hydrolase gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0206 Tpau_0207 Tpau_0207 Tpau_0207 220459 221529 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: svi:Svir_15760 DMT(drug/metabolite transporter) superfamily permease gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0207 Tpau_0208 Tpau_0208 Tpau_0208 221612 222517 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: mmi:MMAR_4902 putative regulatory protein gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0208 Tpau_0209 Tpau_0209 Tpau_0209 222504 223862 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: art:Arth_3774 major facilitator transporter gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0209 Tpau_0210 Tpau_0210 Tpau_0210 223887 225317 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mva:Mvan_4580 H+ antiporter protein gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0210 Tpau_0211 Tpau_0211 Tpau_0211 225328 225654 + transcriptional regulator%2C XRE family KEGG: rsa:RSal33209_1649 trancriptional regulator%2C PopR-like protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0211 Tpau_0212 Tpau_0212 Tpau_0212 225659 226672 - adenylate/guanylate cyclase PFAM: adenylyl cyclase class-3/4/guanylyl cyclase~KEGG: mab:MAB_4771 putative adenylate cyclase~SMART: adenylyl cyclase class-3/4/guanylyl cyclase gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0212 Tpau_0213 Tpau_0213 Tpau_0213 226704 228092 + L-serine dehydratase 1 TIGRFAM: L-serine dehydratase 1~KEGG: rha:RHA1_ro05336 L-serine ammonia-lyase~PFAM: serine dehydratase alpha chain%3B serine dehydratase beta chain gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0213 Tpau_0214 Tpau_0214 Tpau_0214 228130 228534 + NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: art:Arth_0808 NUDIX hydrolase gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0214 Tpau_0215 Tpau_0215 Tpau_0215 228531 229688 + protein of unknown function DUF1006 PFAM: protein of unknown function DUF1006~KEGG: kse:Ksed_08640 hypothetical protein gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0215 Tpau_0216 Tpau_0216 Tpau_0216 229685 230569 - filamentation induced by cAMP protein Fic PFAM: filamentation induced by cAMP protein Fic~KEGG: msm:MSMEG_2181 cell filamentation protein gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0216 Tpau_0217 Tpau_0217 Tpau_0217 230579 232114 - ABC transporter related protein KEGG: sma:SAV_1689 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0217 Tpau_0218 Tpau_0218 Tpau_0218 232538 233836 + ROK family protein PFAM: ROK family protein~KEGG: rha:RHA1_ro02081 ROK family transcriptional regulator gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0218 Tpau_0219 Tpau_0219 Tpau_0219 233733 234827 - filamentation induced by cAMP protein Fic PFAM: filamentation induced by cAMP protein Fic~KEGG: btr:Btr_2350 hypothetical protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0219 Tpau_0220 Tpau_0220 Tpau_0220 234837 235076 - hypothetical protein gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0220 Tpau_0221 Tpau_0221 Tpau_0221 235514 237211 + transposase KEGG: art:Arth_1780 transposase gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0221 Tpau_0222 Tpau_0222 Tpau_0222 237208 238032 + IstB domain protein ATP-binding protein PFAM: IstB domain protein ATP-binding protein~KEGG: art:Arth_1779 IstB ATP binding domain- containing protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0222 Tpau_0223 Tpau_0223 Tpau_0223 238083 238316 + hypothetical protein gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0223 Tpau_0224 Tpau_0224 Tpau_0224 238343 239791 - plasmid pRiA4b ORF-3 family protein PFAM: plasmid pRiA4b ORF-3 family protein~KEGG: nca:Noca_0009 plasmid pRiA4b ORF-3 family protein gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0224 Tpau_0225 Tpau_0225 Tpau_0225 239949 240716 - Abortive infection protein PFAM: Abortive infection protein~KEGG: bcz:BCZK2732 CAAX amino protease gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0225 Tpau_0226 Tpau_0226 Tpau_0226 240730 241104 - hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0226 Tpau_0227 Tpau_0227 Tpau_0227 241182 241331 - pseudogene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0227 Tpau_0228 Tpau_0228 Tpau_0228 241483 241869 - prevent-host-death family protein TIGRFAM: prevent-host-death family protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0228 Tpau_0229 Tpau_0229 Tpau_0229 241967 243022 - protein of unknown function DUF323 PFAM: protein of unknown function DUF323~KEGG: aau:AAur_1451 domain of unknown function (DUF323) protein gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0229 Tpau_0230 Tpau_0230 Tpau_0230 243221 244120 - pseudogene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0230 Tpau_0231 Tpau_0231 Tpau_0231 244120 244413 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0231 Tpau_0232 Tpau_0232 Tpau_0232 244484 244753 + pseudogene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0232 Tpau_0233 Tpau_0233 Tpau_0233 244748 245608 - hypothetical protein KEGG: similar to aspartic acid-rich protein aspolin2-1 gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0233 Tpau_0234 Tpau_0234 Tpau_0234 246027 246320 + pseudogene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0234 Tpau_0235 Tpau_0235 Tpau_0235 246684 248798 + hypothetical protein KEGG: similar to CG4090-PA gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0235 Tpau_0236 Tpau_0236 Tpau_0236 248791 249426 + GAD-like domain protein PFAM: GAD-like domain protein~KEGG: pst:PSPTO_2458 hypothetical protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0236 Tpau_0237 Tpau_0237 Tpau_0237 249520 250155 + GAD-like domain protein PFAM: GAD-like domain protein~KEGG: pst:PSPTO_2458 hypothetical protein gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0237 Tpau_0238 Tpau_0238 Tpau_0238 251269 251544 + prevent-host-death family protein KEGG: lxx:Lxx22678 hypothetical protein~TIGRFAM: prevent-host-death family protein~PFAM: protein of unknown function DUF172 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0238 Tpau_0239 Tpau_0239 Tpau_0239 251541 251834 + plasmid stabilization system PFAM: plasmid stabilization system~KEGG: mbt:JTY_1281 hypothetical protein gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0239 Tpau_0240 Tpau_0240 Tpau_0240 252079 252414 + protein lsr2 precursor KEGG: mab:MAB_0545 protein lsr2 precursor gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0240 Tpau_0241 Tpau_0241 Tpau_0241 252539 252673 + hypothetical protein gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0241 Tpau_0242 Tpau_0242 Tpau_0242 252710 252943 + hypothetical protein gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0242 Tpau_0243 Tpau_0243 Tpau_0243 253245 253424 - hypothetical protein gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0243 Tpau_0244 Tpau_0244 Tpau_0244 253736 255646 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: rop:ROP_61080 hypothetical membrane protein gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0244 Tpau_0245 Tpau_0245 Tpau_0245 255666 256460 - ABC transporter related protein KEGG: fre:Franean1_0530 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0245 Tpau_0246 Tpau_0246 Tpau_0246 256567 259257 - serine/threonine protein kinase SMART: serine/threonine protein kinase~KEGG: sen:SACE_4230 serine/threonine protein kinase gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0246 Tpau_0247 Tpau_0247 Tpau_0247 259624 259848 - hypothetical protein gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0247 Tpau_0248 Tpau_0248 Tpau_0248 260224 260799 + prevent-host-death family protein TIGRFAM: prevent-host-death family protein~KEGG: mpo:Mpop_4538 prevent-host-death family protein gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0248 Tpau_0249 Tpau_0249 Tpau_0249 260842 261657 + Abortive infection protein PFAM: Abortive infection protein~KEGG: nfa:pnf160 hypothetical protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0249 Tpau_0250 Tpau_0250 Tpau_0250 261721 262053 + hypothetical protein gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0250 Tpau_0251 Tpau_0251 Tpau_0251 262050 262622 - conserved hypothetical protein KEGG: rer:pREC1_0014 hypothetical protein gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0251 Tpau_0252 Tpau_0252 Tpau_0252 263397 263804 - hypothetical protein gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0252 Tpau_0253 Tpau_0253 Tpau_0253 264528 267401 + TrwC relaxase PFAM: TrwC relaxase~KEGG: car:cauri_pET4482726 TraA protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0253 Tpau_0254 Tpau_0254 Tpau_0254 267433 268332 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0254 Tpau_0255 Tpau_0255 Tpau_0255 268332 268625 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0255 Tpau_0256 Tpau_0256 Tpau_0256 268697 268810 + hypothetical protein gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0256 Tpau_0257 Tpau_0257 Tpau_0257 269213 269518 + hypothetical protein gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0257 Tpau_0258 Tpau_0258 Tpau_0258 269575 269745 + hypothetical protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0258 Tpau_0259 Tpau_0259 Tpau_0259 269742 270095 + hypothetical protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0259 Tpau_0260 Tpau_0260 Tpau_0260 270155 270730 + hypothetical protein gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0260 Tpau_0261 Tpau_0261 Tpau_0261 270787 271530 + hypothetical protein gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0261 Tpau_0262 Tpau_0262 Tpau_0262 271527 271991 + hypothetical protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0262 Tpau_0263 Tpau_0263 Tpau_0263 271984 273735 + conjugal transfer protein KEGG: cms:CMS_2699 conjugal transfer protein gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0263 Tpau_0264 Tpau_0264 Tpau_0264 273732 274226 + hypothetical protein KEGG: rer:pREC1_0028 hypothetical protein gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0264 Tpau_0265 Tpau_0265 Tpau_0265 274219 274860 + hypothetical protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0265 Tpau_0266 Tpau_0266 Tpau_0266 275068 275673 + hypothetical protein gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0266 Tpau_0267 Tpau_0267 Tpau_0267 275927 277090 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: art:Arth_1766 transposase IS116/IS110/IS902 family protein gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0267 Tpau_0268 Tpau_0268 Tpau_0268 277087 277995 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0268 Tpau_0269 Tpau_0269 Tpau_0269 278036 278356 + pseudogene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0269 Tpau_0270 Tpau_0270 Tpau_0270 278376 279470 + N-acetylmuramoyl-L-alanine amidase family 2 KEGG: cjk:jk0553 putative secreted protein~PFAM: N-acetylmuramoyl-L-alanine amidase family 2~SMART: Animal peptidoglycan recognition protein PGRP gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0270 Tpau_0271 Tpau_0271 Tpau_0271 280311 280439 - hypothetical protein gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0271 Tpau_0272 Tpau_0272 Tpau_0272 280680 281588 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0272 Tpau_0273 Tpau_0273 Tpau_0273 281585 281914 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0273 Tpau_0274 Tpau_0274 Tpau_0274 282026 283240 + transposase IS116/IS110/IS902 family protein PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~KEGG: sen:SACE_4185 hypothetical protein gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0274 Tpau_0275 Tpau_0275 Tpau_0275 283780 285885 - hypothetical protein KEGG: nca:Noca_4254 kinetoplast DNA-associated protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0275 Tpau_0276 Tpau_0276 Tpau_0276 286000 286293 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0276 Tpau_0277 Tpau_0277 Tpau_0277 286293 287192 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0277 Tpau_0278 Tpau_0278 Tpau_0278 287267 287596 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0278 Tpau_0279 Tpau_0279 Tpau_0279 287593 288501 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0279 Tpau_0280 Tpau_0280 Tpau_0280 288586 289368 + F420-dependent oxidoreductase%2C G6PDH family KEGG: mva:Mvan_5448 luciferase family protein~TIGRFAM: F420-dependent oxidoreductase%2C G6PDH family~PFAM: Luciferase-like%2C subgroup gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0280 Tpau_0281 Tpau_0281 Tpau_0281 289404 290277 + pseudogene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0281 Tpau_0282 Tpau_0282 Tpau_0282 290280 290714 - protein of unknown function UCP032285 PFAM: protein of unknown function UCP032285~KEGG: cgb:cg1510 hypothetical protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0282 Tpau_0283 Tpau_0283 Tpau_0283 290779 290997 + pseudogene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0283 Tpau_0284 Tpau_0284 Tpau_0284 291081 292820 - thiamine pyrophosphate protein domain protein TPP-binding protein PFAM: thiamine pyrophosphate protein domain protein TPP-binding%3B thiamine pyrophosphate protein central region%3B thiamine pyrophosphate protein TPP binding domain protein~KEGG: msm:MSMEG_3964 pyruvate dehydrogenase gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0284 Tpau_0285 Tpau_0285 Tpau_0285 293552 293983 + transcriptional regulator%2C MarR family KEGG: rsa:RSal33209_0055 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0285 Tpau_0286 Tpau_0286 Tpau_0286 294186 294719 - conserved hypothetical protein KEGG: mab:MAB_1242c hypothetical protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0286 Tpau_0287 Tpau_0287 Tpau_0287 294716 295498 - conserved hypothetical protein KEGG: mab:MAB_1243c hypothetical protein gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0287 Tpau_0288 Tpau_0288 Tpau_0288 295501 295686 - conserved hypothetical protein KEGG: mab:MAB_1244c hypothetical protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0288 Tpau_0289 Tpau_0289 Tpau_0289 295692 296018 - hypothetical protein KEGG: mab:MAB_1246c hypothetical protein gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0289 Tpau_0290 Tpau_0290 Tpau_0290 296015 296491 - protein of unknown function DUF322 PFAM: protein of unknown function DUF322~KEGG: mab:MAB_1247c hypothetical protein gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0290 Tpau_0291 Tpau_0291 Tpau_0291 296615 296935 - hypothetical protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0291 Tpau_0292 Tpau_0292 Tpau_0292 297464 298561 - pseudogene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0292 Tpau_0293 Tpau_0293 Tpau_0293 298595 299371 - hypothetical protein gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0293 Tpau_0294 Tpau_0294 Tpau_0294 299408 300718 - transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: kse:Ksed_06390 transposase gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0294 Tpau_0295 Tpau_0295 Tpau_0295 301522 301731 + CsbD family protein PFAM: CsbD family protein~KEGG: mab:MAB_1241c hypothetical protein gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0295 Tpau_0296 Tpau_0296 Tpau_0296 301832 302647 + DoxX family protein PFAM: DoxX family protein~KEGG: rop:ROP_07010 hypothetical protein gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0296 Tpau_0297 Tpau_0297 Tpau_0297 302887 304365 - condensation domain protein PFAM: condensation domain protein~KEGG: nfa:nfa30230 hypothetical protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0297 Tpau_0298 Tpau_0298 Tpau_0298 304595 304720 + hypothetical protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0298 Tpau_0299 Tpau_0299 Tpau_0299 304793 305662 - hypothetical protein KEGG: rer:RER_02300 porin MspA gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0299 Tpau_0300 Tpau_0300 Tpau_0300 307376 308275 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0300 Tpau_0301 Tpau_0301 Tpau_0301 308275 308568 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0301 Tpau_0302 Tpau_0302 Tpau_0302 308608 309519 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0302 Tpau_0303 Tpau_0303 Tpau_0303 309516 309845 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0303 Tpau_0304 Tpau_0304 Tpau_0304 309871 311073 + hypothetical protein gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0304 Tpau_0305 Tpau_0305 Tpau_0305 311070 312260 + Mur ligase middle domain protein PFAM: Mur ligase middle domain protein~KEGG: dsy:DSY4395 hypothetical protein gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0305 Tpau_0306 Tpau_0306 Tpau_0306 312260 312739 + poly-gamma-glutamate synthesis protein PgsC KEGG: sha:SH0532 poly-gamma-glutamate synthesis protein PgsC gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0306 Tpau_0307 Tpau_0307 Tpau_0307 312736 313752 + hypothetical protein KEGG: sco:SCO4672 secreted protein gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0307 Tpau_0308 Tpau_0308 Tpau_0308 313749 314651 + hypothetical protein KEGG: scl:sce4411 putative secreted protein gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0308 Tpau_0309 Tpau_0309 Tpau_0309 314913 315704 - helix-turn-helix domain protein SMART: helix-turn-helix domain protein~KEGG: cai:Caci_1970 transcriptional regulator%2C XRE family gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0309 Tpau_0310 Tpau_0310 Tpau_0310 315830 316759 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: sco:SCO3245 salicylate hydroxylase (secreted protein) gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0310 Tpau_0311 Tpau_0311 Tpau_0311 317426 317962 - hypothetical protein gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0311 Tpau_0312 Tpau_0312 Tpau_0312 318554 320206 + hypothetical protein KEGG: bch:Bcen2424_6766 PE-PGRS family protein gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0312 Tpau_0313 Tpau_0313 Tpau_0313 320206 320835 + Lipoprotein LpqT%2C predicted PFAM: Lipoprotein LpqT%2C predicted~KEGG: mjl:Mjls_5766 hypothetical protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0313 Tpau_0314 Tpau_0314 Tpau_0314 321366 322082 - pseudogene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0314 Tpau_0315 Tpau_0315 Tpau_0315 322162 323295 - conserved hypothetical protein KEGG: hypothetical protein gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0315 Tpau_0316 Tpau_0316 Tpau_0316 324014 324661 + conserved hypothetical protein KEGG: mab:MAB_2560 hypothetical protein gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0316 Tpau_0317 Tpau_0317 Tpau_0317 324996 325427 - regulatory protein ArsR SMART: regulatory protein ArsR~KEGG: rha:RHA1_ro04775 hypothetical protein gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0317 Tpau_0318 Tpau_0318 Tpau_0318 325435 326004 - hypothetical protein KEGG: sgr:SGR_1516 hypothetical protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0318 Tpau_0319 Tpau_0319 Tpau_0319 326008 327711 - hypothetical protein KEGG: sgr:SGR_1515 hypothetical protein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0319 Tpau_0320 Tpau_0320 Tpau_0320 327823 328044 - hypothetical protein gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0320 Tpau_0321 Tpau_0321 Tpau_0321 328558 328884 - pseudogene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0321 Tpau_0322 Tpau_0322 Tpau_0322 329376 330293 + hypothetical protein KEGG: mtb:TBMG_00761 hypothetical protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0322 Tpau_0323 Tpau_0323 Tpau_0323 330247 331533 + transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: mul:MUL_4727 transposase for IS2606 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0323 Tpau_0324 Tpau_0324 Tpau_0324 331543 333093 - conserved hypothetical protein KEGG: cmi:pCM2_0032 hypothetical protein gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0324 Tpau_0325 Tpau_0325 Tpau_0325 333298 336843 + pseudogene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0325 Tpau_0326 Tpau_0326 Tpau_0326 336938 337228 + PE domain protein PFAM: PE domain protein~KEGG: mgi:Mflv_5460 PE domain-containing protein gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0326 Tpau_0327 Tpau_0327 Tpau_0327 337242 338579 + PPE protein PFAM: PPE protein~KEGG: mkm:Mkms_0078 PPE protein gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0327 Tpau_0328 Tpau_0328 Tpau_0328 338675 338974 + hypothetical protein gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0328 Tpau_0329 Tpau_0329 Tpau_0329 339014 339313 + hypothetical protein gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0329 Tpau_0330 Tpau_0330 Tpau_0330 339315 340178 + hypothetical protein KEGG: nfa:nfa8210 hypothetical protein gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0330 Tpau_0331 Tpau_0331 Tpau_0331 340258 341997 + conserved hypothetical protein KEGG: msm:MSMEG_0067 hypothetical protein gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0331 Tpau_0332 Tpau_0332 Tpau_0332 342002 343588 + secretion protein snm4 KEGG: msm:MSMEG_0068 transmembrane protein~TIGRFAM: secretion protein snm4~PFAM: protein of unknown function DUF571 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0332 Tpau_0333 Tpau_0333 Tpau_0333 343589 345031 + peptidase S8 and S53 subtilisin kexin sedolisin PFAM: peptidase S8 and S53 subtilisin kexin sedolisin~KEGG: msm:MSMEG_0083 membrane-anchored mycosin mycp1 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0333 Tpau_0334 Tpau_0334 Tpau_0334 345032 347185 + hypothetical protein KEGG: mgi:Mflv_5453 hypothetical protein gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0334 Tpau_0335 Tpau_0335 Tpau_0335 347256 349271 + serine/threonine protein kinase KEGG: mul:MUP011 transmembrane serine/threonine- protein kinase PknQ~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase%3B periplasmic binding protein~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0335 Tpau_0336 Tpau_0336 Tpau_0336 349271 349861 + conserved hypothetical protein KEGG: rop:ROP_51460 hypothetical protein gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0336 Tpau_0337 Tpau_0337 Tpau_0337 349870 350526 + nitroreductase PFAM: nitroreductase~KEGG: fal:FRAAL6601 putative oxidoreductase gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0337 Tpau_0338 Tpau_0338 Tpau_0338 350611 351162 + isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: cai:Caci_2169 isochorismatase hydrolase gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0338 Tpau_0339 Tpau_0339 Tpau_0339 351185 352072 + transcriptional regulator%2C AraC family KEGG: sen:SACE_5167 AraC family transcriptional regulator~PFAM: helix-turn-helix- domain containing protein AraC type%3B ThiJ/PfpI domain protein~SMART: Helix-turn-helix%2C AraC domain gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0339 Tpau_0340 Tpau_0340 Tpau_0340 352100 353266 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: svi:Svir_30260 transcriptional regulator gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0340 Tpau_0341 Tpau_0341 Tpau_0341 353423 354634 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: svi:Svir_30250 acetyl-CoA acetyltransferase~PFAM: Thiolase gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0341 Tpau_0342 Tpau_0342 Tpau_0342 354669 356861 + 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding%3B Enoyl-CoA hydratase/isomerase%3B 3-hydroxyacyl-CoA dehydrogenase domain protein~KEGG: mab:MAB_0851 fatty oxidation protein FadB gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0342 Tpau_0343 Tpau_0343 Tpau_0343 356948 357592 - conserved hypothetical protein KEGG: nfa:nfa31070 hypothetical protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0343 Tpau_0344 Tpau_0344 Tpau_0344 357676 358293 - conserved hypothetical protein KEGG: gox:GOX1008 hypothetical protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0344 Tpau_0345 Tpau_0345 Tpau_0345 358595 359365 - ANTAR domain protein with unknown sensor PFAM: ANTAR domain protein%3B GAF domain protein~KEGG: kra:Krad_2459 response regulator receiver and ANTAR domain protein gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0345 Tpau_0346 Tpau_0346 Tpau_0346 359481 361511 - Neprilysin KEGG: nfa:nfa56400 putative peptidase~PFAM: peptidase M13%3B Peptidase M13%2C neprilysin- like gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0346 Tpau_0347 Tpau_0347 Tpau_0347 361672 363732 + peptidase S15 PFAM: peptidase S15%3B X-Pro dipeptidyl-peptidase domain protein~KEGG: nfa:nfa51880 putative peptidase gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0347 Tpau_0348 Tpau_0348 Tpau_0348 363745 364470 - Pirin domain protein PFAM: Pirin domain protein~KEGG: rop:ROP_51800 hypothetical protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0348 Tpau_0349 Tpau_0349 Tpau_0349 364553 366175 + penicillin-binding protein KEGG: rer:RER_10670 penicillin-binding protein gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0349 Tpau_0350 Tpau_0350 Tpau_0350 366165 366605 - conserved hypothetical protein KEGG: cmi:CMM_2441 hypothetical protein gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0350 Tpau_0351 Tpau_0351 Tpau_0351 366663 367787 - diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: mgi:Mflv_5498 diguanylate cyclase~SMART: GGDEF domain containing protein gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0351 Tpau_0352 Tpau_0352 Tpau_0352 368056 369246 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: mab:MAB_4524 hypothetical protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0352 Tpau_0353 Tpau_0353 Tpau_0353 369344 370549 + putative signal transduction histidine kinase PFAM: ATP-binding region ATPase domain protein~KEGG: mkm:Mkms_3090 putative signal transduction histidine kinase gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0353 Tpau_0354 Tpau_0354 Tpau_0354 370522 371190 + two component transcriptional regulator%2C LuxR family KEGG: rop:ROP_52210 putative NarL family two- component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0354 Tpau_0355 Tpau_0355 Tpau_0355 371187 373244 - copper-translocating P-type ATPase KEGG: mgi:Mflv_2852 copper-translocating P-type ATPase~TIGRFAM: copper-translocating P-type ATPase%3B heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0355 Tpau_0356 Tpau_0356 Tpau_0356 373284 374729 - fumarate lyase PFAM: fumarate lyase%3B Fumarase C-like~KEGG: aau:AAur_3794 aspartate ammonia-lyase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0356 Tpau_0357 Tpau_0357 Tpau_0357 374803 375081 - conserved hypothetical protein KEGG: mab:MAB_2469 hypothetical protein gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0357 Tpau_0358 Tpau_0358 Tpau_0358 375083 375469 - guanine-specific ribonuclease N1 and T1 PFAM: guanine-specific ribonuclease N1 and T1~KEGG: mab:MAB_2468 putative guanyl-specific ribonuclease Sa gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0358 Tpau_0359 Tpau_0359 Tpau_0359 375522 376223 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_11210 putative TetR family transcriptional regulator gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0359 Tpau_0360 Tpau_0360 Tpau_0360 376305 377357 + Oxidoreductase FAD-binding domain protein PFAM: Oxidoreductase FAD-binding domain protein%3B oxidoreductase FAD/NAD(P)-binding domain protein%3B ferredoxin~KEGG: mab:MAB_1588c putative oxidoreductase gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0360 Tpau_0361 Tpau_0361 Tpau_0361 377385 378557 + fatty acid desaturase PFAM: fatty acid desaturase~KEGG: mab:MAB_1587c fatty acid desaturase gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0361 Tpau_0362 Tpau_0362 Tpau_0362 378583 378810 + conserved hypothetical protein KEGG: rop:ROP_11180 hypothetical protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0362 Tpau_0363 Tpau_0363 Tpau_0363 378910 379404 + alginate regulatory protein AlgP KEGG: pag:PLES_56471 alginate regulatory protein AlgP gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0363 Tpau_0364 Tpau_0364 Tpau_0364 379474 382467 - large membrane protein KEGG: mva:Mvan_0196 large membrane protein gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0364 Tpau_0365 Tpau_0365 Tpau_0365 382501 383166 - conserved hypothetical protein KEGG: nfa:nfa54850 hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0365 Tpau_0366 Tpau_0366 Tpau_0366 383163 383966 - tRNA (guanine-N(7)-)-methyltransferase TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase~KEGG: nfa:nfa54840 tRNA (guanine-N(7)-)- methyltransferase~PFAM: putative methyltransferase gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0366 Tpau_0367 Tpau_0367 Tpau_0367 384004 384735 + protein of unknown function DUF1396 PFAM: protein of unknown function DUF1396~KEGG: mjl:Mjls_2429 hypothetical protein gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0367 Tpau_0368 Tpau_0368 Tpau_0368 384732 386321 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mjl:Mjls_2428 major facilitator transporter gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0368 Tpau_0369 Tpau_0369 Tpau_0369 386360 387073 + conserved hypothetical protein KEGG: nfa:nfa54810 hypothetical protein gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0369 Tpau_0370 Tpau_0370 Tpau_0370 387070 388110 + hypothetical protein KEGG: rop:ROP_52280 hypothetical membrane protein gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0370 Tpau_0371 Tpau_0371 Tpau_0371 388100 388435 + hypothetical protein KEGG: mab:MAB_4503c hypothetical protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0371 Tpau_0372 Tpau_0372 Tpau_0372 388524 390368 + Phosphoenolpyruvate carboxykinase (GTP) KEGG: mgi:Mflv_0451 phosphoenolpyruvate carboxykinase~PFAM: phosphoenolpyruvate carboxykinase (GTP) gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0372 Tpau_0373 Tpau_0373 Tpau_0373 390500 391252 - major intrinsic protein PFAM: major intrinsic protein~KEGG: ach:Achl_1986 major intrinsic protein gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0373 Tpau_0374 Tpau_0374 Tpau_0374 391371 392237 - pseudogene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0374 Tpau_0375 Tpau_0375 Tpau_0375 392525 393835 + flavin-containing monooxygenase FMO KEGG: msm:MSMEG_1682 flavin-containing monooxygenase FMO gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0375 Tpau_0376 Tpau_0376 Tpau_0376 393832 394281 + Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: msm:MSMEG_1681 endoribonuclease L-PSP superfamily protein gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0376 Tpau_0377 Tpau_0377 Tpau_0377 394402 394695 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0377 Tpau_0378 Tpau_0378 Tpau_0378 394695 395594 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0378 Tpau_0379 Tpau_0379 Tpau_0379 395613 396248 + protein of unknown function DUF1028 PFAM: protein of unknown function DUF1028~KEGG: msm:MSMEG_1680 hypothetical protein gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0379 Tpau_0380 Tpau_0380 Tpau_0380 396245 397399 + amidohydrolase KEGG: msm:MSMEG_1679 AmiB~TIGRFAM: amidohydrolase~PFAM: peptidase M20 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0380 Tpau_0381 Tpau_0381 Tpau_0381 397470 399572 + NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase%3B FAD- dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rop:ROP_14630 histamine dehydrogenase gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0381 Tpau_0382 Tpau_0382 Tpau_0382 399604 400512 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: rha:RHA1_ro01787 LysR family transcriptional regulator gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0382 Tpau_0383 Tpau_0383 Tpau_0383 400652 403444 + pseudogene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0383 Tpau_0384 Tpau_0384 Tpau_0384 400843 401742 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0384 Tpau_0385 Tpau_0385 Tpau_0385 401742 402035 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0385 Tpau_0386 Tpau_0386 Tpau_0386 403499 405001 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: rop:ROP_14650 aldehyde dehydrogenase gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0386 Tpau_0387 Tpau_0387 Tpau_0387 405131 405982 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: rop:ROP_38490 putative oxidoreductase gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0387 Tpau_0388 Tpau_0388 Tpau_0388 405832 407010 - Beta-lactamase KEGG: mpo:Mpop_1481 beta-lactamase~PFAM: beta-lactamase gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0388 Tpau_0389 Tpau_0389 Tpau_0389 407180 407938 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: rop:ROP_38490 putative oxidoreductase gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0389 Tpau_0390 Tpau_0390 Tpau_0390 407941 409158 - HNH endonuclease KEGG: mjl:Mjls_0290 hypothetical protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0390 Tpau_0391 Tpau_0391 Tpau_0391 409336 409761 - dual specificity protein phosphatase KEGG: sma:SAV_5613 hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0391 Tpau_0392 Tpau_0392 Tpau_0392 409758 410909 - monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: kra:Krad_0778 monooxygenase FAD-binding gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0392 Tpau_0393 Tpau_0393 Tpau_0393 411087 411617 + hypothetical protein KEGG: sgr:SGR_2883 hypothetical protein gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0393 Tpau_0394 Tpau_0394 Tpau_0394 411614 413290 - AAA ATPase central domain protein KEGG: nfa:nfa8260 hypothetical protein~PFAM: AAA ATPase central domain protein%3B Tetratricopeptide TPR_4~SMART: AAA ATPase gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0394 Tpau_0395 Tpau_0395 Tpau_0395 413334 413816 - hypothetical protein KEGG: rer:RER_50940 hypothetical protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0395 Tpau_0396 Tpau_0396 Tpau_0396 413835 414623 + ABC transporter related protein KEGG: nfa:nfa46550 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0396 Tpau_0397 Tpau_0397 Tpau_0397 414625 417195 + protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: rop:ROP_61080 hypothetical membrane protein gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0397 Tpau_0398 Tpau_0398 Tpau_0398 417264 418307 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: mmi:MMAR_4486 dehydrogenase gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0398 Tpau_0399 Tpau_0399 Tpau_0399 418304 419179 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mva:Mvan_4806 ECF subfamily RNA polymerase sigma-24 factor~TIGRFAM: RNA polymerase sigma-70 factor%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70 region 4 type 2%3B sigma-70 region 2 domain protein%3B sigma-70 region 4 domain protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0399 Tpau_0400 Tpau_0400 Tpau_0400 419618 421666 + MgtE intracellular region PFAM: MgtE intracellular region~KEGG: similar to gag protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0400 Tpau_0401 Tpau_0401 Tpau_0401 421736 422509 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: rha:RHA1_ro05186 methyltransferase gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0401 Tpau_0402 Tpau_0402 Tpau_0402 422544 423686 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: rop:ROP_52370 putative glycosyltransferase gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0402 Tpau_0403 Tpau_0403 Tpau_0403 423716 423955 - hypothetical protein gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0403 Tpau_0404 Tpau_0404 Tpau_0404 424105 424320 + hypothetical protein gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0404 Tpau_0405 Tpau_0405 Tpau_0405 424313 425068 + hypothetical protein gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0405 Tpau_0406 Tpau_0406 Tpau_0406 425078 426751 + response regulator receiver modulated FAD- dependent pyridine nucleotide-disulfide oxidoreductase PFAM: response regulator receiver%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rer:RER_40230 two-component system thioredoxin reductase~SMART: response regulator receiver gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0406 Tpau_0407 Tpau_0407 Tpau_0407 426751 428208 + histidine kinase KEGG: rer:RER_40240 two-component histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B cyclic nucleotide-binding~SMART: ATP-binding region ATPase domain protein gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0407 Tpau_0408 Tpau_0408 Tpau_0408 428252 429337 + mycothiol-dependent formaldehyde dehydrogenase KEGG: rha:RHA1_ro02587 mycothiol-dependent formaldehyde dehydrogenase~TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase~PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0408 Tpau_0409 Tpau_0409 Tpau_0409 429334 429960 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: rer:RER_54690 hypothetical protein gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0409 Tpau_0410 Tpau_0410 Tpau_0410 429988 431412 - condensation domain protein PFAM: condensation domain protein~KEGG: nfa:nfa30230 hypothetical protein gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0410 Tpau_0411 Tpau_0411 Tpau_0411 431633 432331 + hypothetical protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0411 Tpau_0412 Tpau_0412 Tpau_0412 432396 433100 + hypothetical protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0412 Tpau_0413 Tpau_0413 Tpau_0413 433142 433777 + hypothetical protein gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0413 Tpau_0414 Tpau_0414 Tpau_0414 433915 435594 - conserved hypothetical protein KEGG: rha:RHA1_ro05188 hypothetical protein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0414 Tpau_0415 Tpau_0415 Tpau_0415 435625 436824 + xylose transporter KEGG: rha:RHA1_ro05189 xylose transporter gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0415 Tpau_0416 Tpau_0416 Tpau_0416 436754 438085 - conserved hypothetical protein KEGG: rer:RER_11110 hypothetical protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0416 Tpau_0417 Tpau_0417 Tpau_0417 438243 439457 + acyltransferase 3 PFAM: acyltransferase 3~KEGG: rop:ROP_52410 putative acyltransferase gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0417 Tpau_0418 Tpau_0418 Tpau_0418 439423 443637 - coagulation factor 5/8 type domain protein PFAM: coagulation factor 5/8 type domain protein~KEGG: rha:RHA1_ro05192 hypothetical protein gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0418 Tpau_0419 Tpau_0419 Tpau_0419 443678 443878 - hypothetical protein gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0419 Tpau_0420 Tpau_0420 Tpau_0420 443916 444410 - UspA domain protein PFAM: UspA domain protein~KEGG: rop:ROP_52450 putative Usp family protein gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0420 Tpau_0421 Tpau_0421 Tpau_0421 444568 445296 + conserved hypothetical protein KEGG: mab:MAB_3767c hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0421 Tpau_0422 Tpau_0422 Tpau_0422 445355 446245 + SMP-30/Gluconolaconase/LRE domain protein PFAM: SMP-30/Gluconolaconase/LRE domain protein~KEGG: rop:ROP_65780 hypothetical protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0422 Tpau_0423 Tpau_0423 Tpau_0423 446268 447431 + glycoside hydrolase family 3 domain protein PFAM: glycoside hydrolase family 3 domain protein~KEGG: rop:ROP_52460 putative glycosidase gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0423 Tpau_0424 Tpau_0424 Tpau_0424 447510 448115 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa54640 putative transcriptional regulator gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0424 Tpau_0425 Tpau_0425 Tpau_0425 448126 448233 - hypothetical protein gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0425 Tpau_0426 Tpau_0426 Tpau_0426 448266 449150 - MaoC domain protein dehydratase PFAM: MaoC domain protein dehydratase~KEGG: rha:RHA1_ro05198 MaoC-like dehydratase gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0426 Tpau_0427 Tpau_0427 Tpau_0427 449152 450510 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_52490 putative 3-oxoacyl-[acyl- carrier-protein] reductase gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0427 Tpau_0428 Tpau_0428 Tpau_0428 450616 451899 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: nfa:nfa54600 acetyl-CoA acetyltransferase~PFAM: Thiolase gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0428 Tpau_0429 Tpau_0429 Tpau_0429 451985 452407 + CoA-binding domain protein PFAM: CoA-binding domain protein~KEGG: stp:Strop_0728 CoA-binding domain-containing protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0429 Tpau_0430 Tpau_0430 Tpau_0430 452409 452912 + hypothetical protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0430 Tpau_0431 Tpau_0431 Tpau_0431 452890 453963 - acyltransferase 3 PFAM: acyltransferase 3~KEGG: mmi:MMAR_4188 integral membrane acyltransferase gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0431 Tpau_0432 Tpau_0432 Tpau_0432 453967 455967 - YhgE/Pip C-terminal domain protein KEGG: mab:MAB_4762 hypothetical protein~TIGRFAM: YhgE/Pip C-terminal domain protein%3B YhgE/Pip N-terminal domain protein~PFAM: ABC-2 type transporter gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0432 Tpau_0433 Tpau_0433 Tpau_0433 455973 456641 - conserved hypothetical protein KEGG: mpa:MAP2368c hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0433 Tpau_0434 Tpau_0434 Tpau_0434 456804 458636 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: nfa:nfa54510 putative acyl-CoA dehydrogenase gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0434 Tpau_0435 Tpau_0435 Tpau_0435 458777 459508 - Methyltransferase type 12 PFAM: Methyltransferase type 12%3B Methyltransferase type 11~KEGG: rha:RHA1_ro05204 3-demethylubiquinone-9 3- methyltransferase gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0435 Tpau_0436 Tpau_0436 Tpau_0436 459505 460275 - Xylose isomerase domain protein TIM barrel KEGG: rop:ROP_15710 putative endonuclease IV~PFAM: Xylose isomerase domain protein TIM barrel~SMART: AP endonuclease family 2 gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0436 Tpau_0437 Tpau_0437 Tpau_0437 460418 461599 + protein of unknown function DUF1023 PFAM: protein of unknown function DUF1023~KEGG: mjl:Mjls_0770 hypothetical protein gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0437 Tpau_0438 Tpau_0438 Tpau_0438 461783 463333 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: bfa:Bfae_02660 arabinose efflux permease family protein gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0438 Tpau_0439 Tpau_0439 Tpau_0439 463433 463975 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: aau:AAur_0986 TetR family transcriptional regulator gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0439 Tpau_0440 Tpau_0440 Tpau_0440 464123 464338 - hypothetical protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0440 Tpau_0441 Tpau_0441 Tpau_0441 464858 465343 - hypothetical protein KEGG: mlu:Mlut_12550 guanylate kinase gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0441 Tpau_0442 Tpau_0442 Tpau_0442 466529 466750 + hypothetical protein gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0442 Tpau_0443 Tpau_0443 Tpau_0443 466942 467712 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: ckp:ckrop_0178 putative short-chain alcohol dehydrogenase gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0443 Tpau_0444 Tpau_0444 Tpau_0444 467787 469415 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: nfa:nfa7120 acyl-CoA synthetase gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0444 Tpau_0445 Tpau_0445 Tpau_0445 469526 470026 - hypothetical protein gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0445 Tpau_0446 Tpau_0446 Tpau_0446 470052 471290 - Glutaminase KEGG: sgr:SGR_6768 putative glutaminase~PFAM: Glutaminase%2C core gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0446 Tpau_0447 Tpau_0447 Tpau_0447 471439 472824 + aminotransferase class-III PFAM: aminotransferase class-III~KEGG: msm:MSMEG_2450 hypothetical protein gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0447 Tpau_0448 Tpau_0448 Tpau_0448 472842 473333 + conserved hypothetical protein KEGG: mab:MAB_3139c hypothetical protein gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0448 Tpau_0449 Tpau_0449 Tpau_0449 473554 475011 + Catalase KEGG: sgr:SGR_1958 putative catalase~PFAM: Catalase related subgroup%3B Catalase domain protein gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0449 Tpau_0450 Tpau_0450 Tpau_0450 475018 475791 - methylthioadenosine phosphorylase TIGRFAM: methylthioadenosine phosphorylase~KEGG: msm:MSMEG_0990 5'-methylthioadenosine phosphorylase~PFAM: purine or other phosphorylase family 1 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0450 Tpau_0451 Tpau_0451 Tpau_0451 475788 476099 - hypothetical protein gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0451 Tpau_0452 Tpau_0452 Tpau_0452 476177 476542 + conserved hypothetical protein KEGG: nfa:nfa26690 hypothetical protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0452 Tpau_0453 Tpau_0453 Tpau_0453 476594 477640 + conserved hypothetical protein KEGG: mab:MAB_0392c hypothetical protein gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0453 Tpau_0454 Tpau_0454 Tpau_0454 477655 479139 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: mmi:MMAR_4815 L-asparagine permease AnsP1 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0454 Tpau_0455 Tpau_0455 Tpau_0455 479481 480554 + N-acetylmuramoyl-L-alanine amidase family 2 KEGG: cjk:jk0553 putative secreted protein~PFAM: N-acetylmuramoyl-L-alanine amidase family 2~SMART: Animal peptidoglycan recognition protein PGRP gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0455 Tpau_0456 Tpau_0456 Tpau_0456 480700 481929 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: bcj:BCAM1381 major facilitator superfamily protein gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0456 Tpau_0457 Tpau_0457 Tpau_0457 481922 482686 + amidohydrolase 2 PFAM: amidohydrolase 2~KEGG: cgb:cg0540 hypothetical protein gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0457 Tpau_0458 Tpau_0458 Tpau_0458 482836 484209 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: nfa:nfa12290 putative amino acid transporter gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0458 Tpau_0459 Tpau_0459 Tpau_0459 484292 484861 + deoxycytidine triphosphate deaminase KEGG: rop:ROP_54420 deoxycytidine triphosphate deaminase~TIGRFAM: deoxycytidine triphosphate deaminase~PFAM: deoxyUTP pyrophosphatase gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0459 Tpau_0460 Tpau_0460 Tpau_0460 484865 486556 - YibE/F family protein PFAM: YibE/F family protein~KEGG: rop:ROP_55290 hypothetical membrane protein gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0460 Tpau_0461 Tpau_0461 Tpau_0461 486567 487823 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: rer:RER_13320 alanine aminotransferase gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0461 Tpau_0462 Tpau_0462 Tpau_0462 487870 488877 - conserved hypothetical protein KEGG: mjl:Mjls_0458 hypothetical protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0462 Tpau_0463 Tpau_0463 Tpau_0463 488975 489556 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: bcv:Bcav_3630 transcriptional regulator%2C TetR family gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0463 Tpau_0464 Tpau_0464 Tpau_0464 489647 490231 - conserved hypothetical protein KEGG: mmi:MMAR_2661 hypothetical protein gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0464 Tpau_0465 Tpau_0465 Tpau_0465 490277 493672 - protein of unknown function DUF224 cysteine-rich region domain protein PFAM: protein of unknown function DUF224 cysteine- rich region domain protein%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: nfa:nfa54200 putative iron-sulphur-binding reductase gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0465 Tpau_0466 Tpau_0466 Tpau_0466 493808 494359 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: rer:RER_53690 hypothetical protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0466 Tpau_0467 Tpau_0467 Tpau_0467 494382 494711 + hypothetical protein gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0467 Tpau_0468 Tpau_0468 Tpau_0468 494882 495841 + putative transcriptional regulator%2C TetR family PFAM: regulatory protein TetR%3B Polyketide cyclase/dehydrase~KEGG: fal:FRAAL5132 TetR family transcriptional repressor gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0468 Tpau_0469 Tpau_0469 Tpau_0469 496069 496563 + conserved hypothetical protein KEGG: bcv:Bcav_3729 hypothetical protein gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0469 Tpau_0470 Tpau_0470 Tpau_0470 496582 497451 - exodeoxyribonuclease III Xth KEGG: fal:FRAAL1883 putative exodeoxyribonuclease III~TIGRFAM: exodeoxyribonuclease III Xth%3B exodeoxyribonuclease III~PFAM: Endonuclease/exonuclease/phosphatase gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0470 Tpau_0471 Tpau_0471 Tpau_0471 497482 498531 - conserved hypothetical protein KEGG: rer:RER_53080 hypothetical protein gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0471 Tpau_0472 Tpau_0472 Tpau_0472 498620 499429 + Squalene/phytoene synthase PFAM: Squalene/phytoene synthase~KEGG: krh:KRH_20840 phytoene synthase gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0472 Tpau_0473 Tpau_0473 Tpau_0473 499506 500516 + hypothetical protein KEGG: kra:Krad_2817 hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0473 Tpau_0474 Tpau_0474 Tpau_0474 500513 500854 + transcriptional regulator%2C PadR-like family PFAM: transcriptional regulator PadR family protein~KEGG: kra:Krad_2816 transcriptional regulator%2C PadR- like family gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0474 Tpau_0475 Tpau_0475 Tpau_0475 500923 501795 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: cmi:CMM_2872 putative hydrolase/acyltransferase gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0475 Tpau_0476 Tpau_0476 Tpau_0476 501792 502688 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: mav:MAV_4120 hydrolase%2C alpha/beta fold family protein%2C putative gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0476 Tpau_0477 Tpau_0477 Tpau_0477 502698 503855 - ferredoxin PFAM: ferredoxin%3B Oxidoreductase FAD-binding domain protein%3B oxidoreductase FAD/NAD(P)-binding domain protein~KEGG: msm:MSMEG_3676 phenoxybenzoate dioxygenase beta subunit gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0477 Tpau_0478 Tpau_0478 Tpau_0478 503852 504748 - Uncharacterized conserved protein UCP07580 PFAM: Uncharacterised conserved protein UCP07580~KEGG: mjl:Mjls_2904 hypothetical protein gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0478 Tpau_0479 Tpau_0479 Tpau_0479 504906 505250 + transcriptional regulator%2C ArsR family KEGG: fal:FRAAL3030 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0479 Tpau_0480 Tpau_0480 Tpau_0480 505254 505730 + Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein~KEGG: bcv:Bcav_2882 activator of HSP90 ATPase 1 family protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0480 Tpau_0481 Tpau_0481 Tpau_0481 505734 506516 - Nucleotidyltransferase%2C predicted PFAM: Nucleotidyltransferase%2C predicted~KEGG: tfu:Tfu_1072 hypothetical protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0481 Tpau_0482 Tpau_0482 Tpau_0482 506585 507997 + Methyltransferase type 12 PFAM: Methyltransferase type 12~KEGG: rop:ROP_04910 hypothetical protein gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0482 Tpau_0483 Tpau_0483 Tpau_0483 507990 510482 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: rop:ROP_04920 serine/threonine protein phosphatase PrpA gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0483 Tpau_0484 Tpau_0484 Tpau_0484 510490 511971 - phytoene desaturase KEGG: rha:RHA1_ro01107 phytoene dehydrogenase~TIGRFAM: phytoene desaturase~PFAM: amine oxidase%3B FAD dependent oxidoreductase gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0484 Tpau_0485 Tpau_0485 Tpau_0485 512096 514141 + heavy metal translocating P-type ATPase KEGG: cgt:cgR_0148 hypothetical protein~TIGRFAM: heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC%3B cadmium-translocating P-type ATPase~PFAM: E1-E2 ATPase-associated domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0485 Tpau_0486 Tpau_0486 Tpau_0486 514723 516564 + chaperone protein DnaK KEGG: nfa:nfa54090 molecular chaperone DnaK~TIGRFAM: chaperone protein DnaK~PFAM: Heat shock protein 70 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0486 Tpau_0487 Tpau_0487 Tpau_0487 516564 517163 + GrpE protein PFAM: GrpE protein~KEGG: rha:RHA1_ro05498 heat shock protein GrpE gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0487 Tpau_0488 Tpau_0488 Tpau_0488 517180 518382 + chaperone protein DnaJ TIGRFAM: chaperone protein DnaJ~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein%3B DnaJ central domain protein~KEGG: rop:ROP_55740 chaperone protein DnaJ~SMART: heat shock protein DnaJ domain protein gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0488 Tpau_0489 Tpau_0489 Tpau_0489 518382 518780 + transcriptional regulator%2C MerR family KEGG: rop:ROP_55750 putative heat shock protein HspR~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0489 Tpau_0490 Tpau_0490 Tpau_0490 518802 519062 + conserved hypothetical protein KEGG: mab:MAB_1837c hypothetical protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0490 Tpau_0491 Tpau_0491 Tpau_0491 519117 519878 + S1/P1 nuclease PFAM: S1/P1 nuclease~KEGG: mab:MAB_1838 endonuclease gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0491 Tpau_0492 Tpau_0492 Tpau_0492 519886 521034 - oxidoreductase FAD/NAD(P)-binding domain protein PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein%3B globin~KEGG: mkm:Mkms_0481 oxidoreductase FAD-binding subunit gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0492 Tpau_0493 Tpau_0493 Tpau_0493 521301 522185 + lipolytic protein G-D-S-L family PFAM: lipolytic protein G-D-S-L family~KEGG: ach:Achl_2886 lipolytic protein G-D-S-L family gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0493 Tpau_0494 Tpau_0494 Tpau_0494 522331 524871 + ATP-dependent chaperone ClpB TIGRFAM: ATP-dependent chaperone ClpB~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like%3B AAA ATPase central domain protein%3B Torsin%3B ATPase associated with various cellular activities AAA_5%3B Clp domain protein~KEGG: rha:RHA1_ro05514 ATP-binding subunit of heat shock protein ClpB~SMART: AAA ATPase gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0494 Tpau_0495 Tpau_0495 Tpau_0495 524969 526006 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: hypothetical protein %3B K08726 soluble epoxide hydrolase gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0495 Tpau_0496 Tpau_0496 Tpau_0496 526026 526406 + PPOX class putative F420-dependent enzyme KEGG: rha:RHA1_ro00170 hypothetical protein~TIGRFAM: PPOX class probable F420-dependent enzyme~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0496 Tpau_0497 Tpau_0497 Tpau_0497 526499 527356 + conserved hypothetical protein KEGG: mjl:Mjls_0128 hypothetical protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0497 Tpau_0498 Tpau_0498 Tpau_0498 527416 528567 - iron-containing alcohol dehydrogenase PFAM: iron-containing alcohol dehydrogenase%3B 3- dehydroquinate synthase~KEGG: tfu:Tfu_2801 glycerol dehydrogenase gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0498 Tpau_0499 Tpau_0499 Tpau_0499 528633 528905 - hypothetical protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0499 Tpau_0500 Tpau_0500 Tpau_0500 528902 529288 - protein of unknown function DUF202 PFAM: protein of unknown function DUF202~KEGG: mlu:Mlut_04300 predicted membrane protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0500 Tpau_0501 Tpau_0501 Tpau_0501 529410 529856 + hypothetical protein KEGG: nfa:nfa54010 hypothetical protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0501 Tpau_0502 Tpau_0502 Tpau_0502 529889 530581 + conserved hypothetical protein KEGG: rha:RHA1_ro05516 hypothetical protein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0502 Tpau_0503 Tpau_0503 Tpau_0503 530578 531141 + orotate phosphoribosyltransferase TIGRFAM: orotate phosphoribosyltransferase~KEGG: rop:ROP_55920 orotate phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0503 Tpau_0504 Tpau_0504 Tpau_0504 531138 531836 + tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase (SpoU)~KEGG: rop:ROP_56060 putative RNA methyltransferase gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0504 Tpau_0505 Tpau_0505 Tpau_0505 531924 533045 + alpha-1%2C6-mannanase KEGG: rha:RHA1_ro05531 alpha-1%2C6-mannanase gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0505 Tpau_0506 Tpau_0506 Tpau_0506 533263 535311 + conserved hypothetical protein KEGG: cai:Caci_6901 hypothetical protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0506 Tpau_0507 Tpau_0507 Tpau_0507 535339 536988 - ABC transporter related protein KEGG: rer:RER_45590 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0507 Tpau_0508 Tpau_0508 Tpau_0508 536988 537623 - SNARE associated Golgi protein-related protein PFAM: SNARE associated Golgi protein~KEGG: rha:RHA1_ro05534 hypothetical protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0508 Tpau_0509 Tpau_0509 Tpau_0509 537632 538351 - SNARE associated Golgi protein-related protein PFAM: SNARE associated Golgi protein~KEGG: rer:RER_14110 hypothetical protein gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0509 Tpau_0510 Tpau_0510 Tpau_0510 538370 540241 - Na+/H+ antiporter KEGG: art:Arth_3572 Na+/H+ antiporter~TIGRFAM: Na+/H+ antiporter~PFAM: sodium/hydrogen exchanger gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0510 Tpau_0511 Tpau_0511 Tpau_0511 540292 541320 + fructose-bisphosphate aldolase%2C class II KEGG: rha:RHA1_ro05536 fructose-bisphosphate aldolase~TIGRFAM: fructose-bisphosphate aldolase%2C class II%3B ketose-bisphosphate aldolase~PFAM: ketose-bisphosphate aldolase class-II gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0511 Tpau_0512 Tpau_0512 Tpau_0512 541374 541706 + malto-oligosyltrehalose trehalohydrolase KEGG: bvi:Bcep1808_5810 malto-oligosyltrehalose trehalohydrolase gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0512 Tpau_0513 Tpau_0513 Tpau_0513 541855 543582 - hypothetical protein KEGG: rop:ROP_56120 hypothetical membrane protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0513 Tpau_0514 Tpau_0514 Tpau_0514 543687 544106 + conserved hypothetical protein KEGG: mav:MAV_4783 hypothetical protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0514 Tpau_0515 Tpau_0515 Tpau_0515 544066 545232 + conserved hypothetical protein KEGG: rer:RER_14150 hypothetical protein gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0515 Tpau_0516 Tpau_0516 Tpau_0516 545237 545872 - conserved hypothetical protein KEGG: nfa:nfa53740 hypothetical protein gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0516 Tpau_0517 Tpau_0517 Tpau_0517 545957 547243 + adenylosuccinate synthetase SMART: adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthetase~KEGG: rha:RHA1_ro05551 adenylosuccinate synthetase~PFAM: adenylosuccinate synthetase gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0517 Tpau_0518 Tpau_0518 Tpau_0518 547457 549109 + hypothetical protein KEGG: bch:Bcen2424_6766 PE-PGRS family protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0518 Tpau_0519 Tpau_0519 Tpau_0519 549109 549738 + Lipoprotein LpqT%2C predicted PFAM: Lipoprotein LpqT%2C predicted~KEGG: mjl:Mjls_5766 hypothetical protein gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0519 Tpau_0520 Tpau_0520 Tpau_0520 549786 550460 + two component transcriptional regulator%2C winged helix family KEGG: cai:Caci_5788 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0520 Tpau_0521 Tpau_0521 Tpau_0521 550453 551580 + integral membrane sensor signal transduction histidine kinase KEGG: fre:Franean1_7134 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0521 Tpau_0522 Tpau_0522 Tpau_0522 551638 552270 - D-Ala-D-Ala dipeptidase KEGG: cai:Caci_5792 peptidase M15D VanX D-ala-D-ala dipeptidase~PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0522 Tpau_0523 Tpau_0523 Tpau_0523 552270 553304 - D-alanine/D-alanine ligase TIGRFAM: D-alanine/D-alanine ligase~KEGG: sco:SCO3595 D-alanine:D-lactate ligase~PFAM: D-alanine--D-alanine ligase domain protein%3B ATP-dependent carboxylate-amine ligase domain protein ATP- grasp%3B protein of unknown function DUF201 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0523 Tpau_0524 Tpau_0524 Tpau_0524 553301 554299 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: fre:Franean1_7138 D-isomer specific 2- hydroxyacid dehydrogenase NAD-binding gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0524 Tpau_0525 Tpau_0525 Tpau_0525 554366 555316 - PfkB domain protein PFAM: PfkB domain protein~KEGG: kse:Ksed_20450 sugar kinase%2C ribokinase gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0525 Tpau_0526 Tpau_0526 Tpau_0526 555318 556691 - sugar transporter KEGG: emi:Emin_0368 sugar transporter~TIGRFAM: sugar transporter~PFAM: General substrate transporter%3B major facilitator superfamily MFS_1 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0526 Tpau_0527 Tpau_0527 Tpau_0527 556800 558572 + phosphoribosylglycinamide formyltransferase 2 KEGG: rop:ROP_19590 glycinamide ribonucleotide transformylase PurT~TIGRFAM: phosphoribosylglycinamide formyltransferase 2~PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0527 Tpau_0528 Tpau_0528 Tpau_0528 558576 559337 - rRNA (adenine-N(6)-)-methyltransferase PFAM: ribosomal RNA adenine methylase transferase~KEGG: cjk:jk1436 23S rRNA methyltransferase~SMART: Ribosomal RNA adenine methylase transferase- like gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0528 Tpau_0529 Tpau_0529 Tpau_0529 559527 560249 - FAD-binding 9 siderophore-interacting domain protein PFAM: FAD-binding 9 siderophore-interacting domain protein%3B Siderophore-interacting protein~KEGG: nfa:nfa7590 putative siderophore-interacting protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0529 Tpau_0530 Tpau_0530 Tpau_0530 560438 560956 - hypothetical protein KEGG: dae:Dtox_2326 drug resistance transporter%2C EmrB/QacA subfamily gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0530 Tpau_0531 Tpau_0531 Tpau_0531 561341 562009 + peptidase S1 and S6 chymotrypsin/Hap PFAM: peptidase S1 and S6 chymotrypsin/Hap~KEGG: cgt:cgR_0900 hypothetical protein gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0531 Tpau_0532 Tpau_0532 Tpau_0532 562157 562525 + hypothetical protein gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0532 Tpau_0533 Tpau_0533 Tpau_0533 562619 564007 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rha:RHA1_ro02240 ferredoxin--NADP(+) reductase gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0533 Tpau_0534 Tpau_0534 Tpau_0534 564156 564623 + conserved hypothetical protein KEGG: mva:Mvan_0686 hypothetical protein gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0534 Tpau_0535 Tpau_0535 Tpau_0535 564605 565033 + Rhodanese domain protein SMART: Rhodanese domain protein~KEGG: rop:ROP_19530 hypothetical protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0535 Tpau_0536 Tpau_0536 Tpau_0536 565043 566245 + O-succinylhomoserine sulfhydrylase TIGRFAM: O-succinylhomoserine sulfhydrylase~KEGG: mab:MAB_4242c O-succinylhomoserine sulfhydrylase~PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0536 Tpau_0537 Tpau_0537 Tpau_0537 566271 566960 - CutC family protein PFAM: CutC family protein~KEGG: sgr:SGR_3189 putative homeostasis protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0537 Tpau_0538 Tpau_0538 Tpau_0538 566950 568164 - HNH nuclease SMART: HNH nuclease~KEGG: mbt:JTY_3094 hypothetical protein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0538 Tpau_0539 Tpau_0539 Tpau_0539 568288 568965 + hypothetical protein gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0539 Tpau_0540 Tpau_0540 Tpau_0540 568975 569499 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: cms:CMS_0876 hypothetical protein gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0540 Tpau_0541 Tpau_0541 Tpau_0541 569593 570171 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:pREL1_0102 TetR family transcriptional regulator gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0541 Tpau_0542 Tpau_0542 Tpau_0542 570239 571583 + pseudogene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0542 Tpau_0543 Tpau_0543 Tpau_0543 571798 572964 + protein of unknown function UPF0027 PFAM: protein of unknown function UPF0027~KEGG: art:Arth_3119 hypothetical protein gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0543 Tpau_0544 Tpau_0544 Tpau_0544 573034 573819 - HAD-superfamily hydrolase%2C subfamily IIA KEGG: rop:ROP_19480 putative NMP phosphatase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIA~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0544 Tpau_0545 Tpau_0545 Tpau_0545 573838 574311 - Ferritin Dps family protein PFAM: Ferritin Dps family protein~KEGG: nfa:nfa43820 hypothetical protein gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0545 Tpau_0546 Tpau_0546 Tpau_0546 574659 575948 + Cysteine desulfurase KEGG: mab:MAB_0512 aminotransferase/cysteine desulfurase~PFAM: aminotransferase class V%3B aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0546 Tpau_0547 Tpau_0547 Tpau_0547 575974 576363 + hypothetical protein KEGG: rer:RER_05550 hypothetical protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0547 Tpau_0548 Tpau_0548 Tpau_0548 576391 576882 + YbaK/prolyl-tRNA synthetase associated region PFAM: YbaK/prolyl-tRNA synthetase associated region~KEGG: bcv:Bcav_3926 YbaK/prolyl-tRNA synthetase associated region gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0548 Tpau_0549 Tpau_0549 Tpau_0549 576991 577464 + transcriptional regulator%2C MarR family KEGG: sen:SACE_0389 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0549 Tpau_0550 Tpau_0550 Tpau_0550 577465 580653 + tRNA-guanine transglycosylase%2C various specificities TIGRFAM: tRNA-guanine transglycosylase%2C various specificities%3B drug resistance transporter%2C EmrB/QacA subfamily~KEGG: rha:RHA1_ro04399 major facilitator superfamily multidrug transporter~PFAM: major facilitator superfamily MFS_1%3B Queuine/other tRNA-ribosyltransferase gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0550 Tpau_0551 Tpau_0551 Tpau_0551 580690 581367 + hypothetical protein KEGG: fra:Francci3_3820 alkaline phosphatase gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0551 Tpau_0552 Tpau_0552 Tpau_0552 581437 581937 - Inorganic diphosphatase KEGG: rer:RER_06170 inorganic pyrophosphatase~PFAM: Inorganic pyrophosphatase gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0552 Tpau_0553 Tpau_0553 Tpau_0553 582051 583421 + D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase KEGG: rer:RER_06180 D-alanyl-D-alanine carboxypeptidase~TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase~PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0553 Tpau_0554 Tpau_0554 Tpau_0554 583428 584465 + conserved hypothetical protein KEGG: rop:ROP_43180 hypothetical protein~TIGRFAM: conserved hypothetical protein~PFAM: Protein of unknown function DUF2342 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0554 Tpau_0555 Tpau_0555 Tpau_0555 584462 585400 + tRNA(Ile)-lysidine synthetase KEGG: mgi:Mflv_1411 tRNA(Ile)-lysidine synthetase~TIGRFAM: tRNA(Ile)-lysidine synthetase~PFAM: PP-loop domain protein gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0555 Tpau_0556 Tpau_0556 Tpau_0556 585397 585963 + hypoxanthine phosphoribosyltransferase TIGRFAM: hypoxanthine phosphoribosyltransferase~KEGG: mjl:Mjls_5161 hypoxanthine phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0556 Tpau_0557 Tpau_0557 Tpau_0557 585960 587270 + Amidase PFAM: Amidase~KEGG: rha:RHA1_ro04406 amidase gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0557 Tpau_0558 Tpau_0558 Tpau_0558 587274 587711 - conserved hypothetical protein KEGG: mva:Mvan_4969 hypothetical protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0558 Tpau_0559 Tpau_0559 Tpau_0559 587870 590275 + ATP-dependent metalloprotease FtsH SMART: AAA ATPase~TIGRFAM: ATP-dependent metalloprotease FtsH~KEGG: nfa:nfa3980 putative cell division protein~PFAM: peptidase M41%3B peptidase M41 FtsH extracellular%3B AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0559 Tpau_0560 Tpau_0560 Tpau_0560 590277 590873 + GTP cyclohydrolase I TIGRFAM: GTP cyclohydrolase I~KEGG: mjl:Mjls_5155 GTP cyclohydrolase I~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0560 Tpau_0561 Tpau_0561 Tpau_0561 590870 591742 + dihydropteroate synthase TIGRFAM: dihydropteroate synthase~KEGG: rha:RHA1_ro04409 dihydropteroate synthase~PFAM: dihydropteroate synthase DHPS gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0561 Tpau_0562 Tpau_0562 Tpau_0562 591742 592125 + dihydroneopterin aldolase TIGRFAM: dihydroneopterin aldolase~KEGG: msm:MSMEG_6102 dihydroneopterin aldolase~PFAM: dihydroneopterin aldolase gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0562 Tpau_0563 Tpau_0563 Tpau_0563 592122 592610 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase~KEGG: rop:ROP_43270 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase~PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0563 Tpau_0564 Tpau_0564 Tpau_0564 592664 593134 + conserved hypothetical protein KEGG: rop:ROP_43280 hypothetical membrane protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0564 Tpau_0565 Tpau_0565 Tpau_0565 593236 594381 + conserved hypothetical protein KEGG: mgi:Mflv_1422 hypothetical protein gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0565 Tpau_0566 Tpau_0566 Tpau_0566 594493 595434 + Domain of unknown function DUF2520 PFAM: Domain of unknown function DUF2520%3B Putative oxidoreductase/dehydrogenase%2C Rossmann-like domain~KEGG: rop:ROP_43300 hypothetical protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0566 Tpau_0567 Tpau_0567 Tpau_0567 595431 596357 + pantoate/beta-alanine ligase TIGRFAM: pantoate/beta-alanine ligase~KEGG: rha:RHA1_ro04415 pantoate--beta-alanine ligase~PFAM: Pantoate-beta-alanine ligase gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0567 Tpau_0568 Tpau_0568 Tpau_0568 596360 596767 + aspartate 1-decarboxylase TIGRFAM: aspartate 1-decarboxylase~KEGG: ami:Amir_0326 aspartate 1-decarboxylase~PFAM: aspartate decarboxylase gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0568 Tpau_0569 Tpau_0569 Tpau_0569 596767 597624 + putative transcriptional acitvator%2C Baf family KEGG: rha:RHA1_ro04417 transcriptional regulator~TIGRFAM: transcriptional activator%2C Baf family~PFAM: Bvg accessory factor gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0569 Tpau_0570 Tpau_0570 Tpau_0570 597786 598160 + conserved hypothetical protein KEGG: nfa:nfa4100 hypothetical protein gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0570 Tpau_0571 Tpau_0571 Tpau_0571 598195 599991 + lysyl-tRNA synthetase TIGRFAM: lysyl-tRNA synthetase~KEGG: sma:SAV_4749 lysyl-tRNA synthetase~PFAM: Lysyl-tRNA synthetase class 1c gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0571 Tpau_0572 Tpau_0572 Tpau_0572 600131 600475 + Lsr2 protein KEGG: msm:MSMEG_6092 Lsr2 protein gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0572 Tpau_0573 Tpau_0573 Tpau_0573 600786 603353 + ATPase AAA-2 domain protein KEGG: nfa:nfa4150 putative Clp protease~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like%3B AAA ATPase central domain protein%3B UvrB/UvrC protein%3B ATPase associated with various cellular activities AAA_5%3B Clp domain protein~SMART: AAA ATPase gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0573 Tpau_0574 Tpau_0574 Tpau_0574 603501 603611 + hypothetical protein gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0574 Tpau_0575 Tpau_0575 Tpau_0575 603690 604478 + conserved hypothetical protein KEGG: mxa:MXAN_4531 hypothetical protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0575 Tpau_0576 Tpau_0576 Tpau_0576 604551 605117 + flavin reductase domain protein FMN-binding protein PFAM: flavin reductase domain protein FMN-binding~KEGG: mul:MUL_4138 oxidase gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0576 Tpau_0577 Tpau_0577 Tpau_0577 605216 605902 + hypothetical protein KEGG: xca:xccb100_2218 flagellar hook-length control protein FliK gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0577 Tpau_0578 Tpau_0578 Tpau_0578 605896 606276 + hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0578 Tpau_0579 Tpau_0579 Tpau_0579 606421 606570 - pseudogene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0579 Tpau_0580 Tpau_0580 Tpau_0580 606748 607974 - NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase~KEGG: abb:ABBFA_001634 NADH oxidase gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0580 Tpau_0581 Tpau_0581 Tpau_0581 607980 608744 - pseudogene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0581 Tpau_0582 Tpau_0582 Tpau_0582 608741 609541 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: abb:ABBFA_001631 short chain dehydrogenase family protein gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0582 Tpau_0583 Tpau_0583 Tpau_0583 609538 610887 - flavin-containing monooxygenase FMO PFAM: flavin-containing monooxygenase FMO~KEGG: cyc:PCC7424_4856 flavin-containing monooxygenase gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0583 Tpau_0584 Tpau_0584 Tpau_0584 611083 611706 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: msm:MSMEG_2368 transcriptional regulator gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0584 Tpau_0585 Tpau_0585 Tpau_0585 611784 612470 - protein of unknown function DUF308 membrane PFAM: protein of unknown function DUF308 membrane~KEGG: nfa:nfa31070 hypothetical protein gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0585 Tpau_0586 Tpau_0586 Tpau_0586 612551 612877 - Antibiotic biosynthesis monooxygenase PFAM: Antibiotic biosynthesis monooxygenase~KEGG: rha:RHA1_ro04436 hypothetical protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0586 Tpau_0587 Tpau_0587 Tpau_0587 612912 613688 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold%3B PGAP1 family protein~KEGG: mgi:Mflv_1435 alpha/beta hydrolase fold gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0587 Tpau_0588 Tpau_0588 Tpau_0588 613691 614476 + DNA glycosylase/AP lyase%2C H2TH DNA-binding protein PFAM: DNA glycosylase/AP lyase%2C H2TH DNA-binding%3B Formamidopyrimidine-DNA glycosylase catalytic domain protein~KEGG: rer:RER_20980 DNA glycosylase gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0588 Tpau_0589 Tpau_0589 Tpau_0589 614555 615490 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rsa:RSal33209_1125 short chain dehydrogenase gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0589 Tpau_0590 Tpau_0590 Tpau_0590 615474 616043 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sco:SCO4008 TetR family regulatory protein gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0590 Tpau_0591 Tpau_0591 Tpau_0591 616044 616760 - DSBA oxidoreductase PFAM: DSBA oxidoreductase~KEGG: sma:SAV_6393 protein dithiol-disulfide isomerase gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0591 Tpau_0592 Tpau_0592 Tpau_0592 616806 616970 - hypothetical protein gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0592 Tpau_0593 Tpau_0593 Tpau_0593 617059 617904 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B Male sterility domain~KEGG: nfa:nfa10990 putative short chain dehydrogenase gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0593 Tpau_0594 Tpau_0594 Tpau_0594 617914 618891 - Protein of unknown function DUF2236 PFAM: Protein of unknown function DUF2236~KEGG: rer:RER_04190 hypothetical protein gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0594 Tpau_0595 Tpau_0595 Tpau_0595 618937 619848 - HhH-GPD family protein KEGG: nfa:nfa4290 putative A/G-specific adenine glycosylase~PFAM: HhH-GPD family protein%3B helix-hairpin-helix motif%3B iron-sulfur cluster loop~SMART: HhH-GPD family protein%3B iron-sulfur cluster loop gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0595 Tpau_0596 Tpau_0596 Tpau_0596 619867 620520 + carbonic anhydrase PFAM: carbonic anhydrase~KEGG: rop:ROP_43660 carbonic anhydrase gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0596 Tpau_0597 Tpau_0597 Tpau_0597 620581 621375 + conserved hypothetical protein KEGG: rha:RHA1_ro04450 hypothetical protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0597 Tpau_0598 Tpau_0598 Tpau_0598 621372 622454 - protein of unknown function DUF147 PFAM: protein of unknown function DUF147%3B DNA integrity scanning%2C DisA%2C linker region~KEGG: rer:RER_06820 hypothetical protein gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0598 Tpau_0599 Tpau_0599 Tpau_0599 622465 623850 - DNA repair protein RadA KEGG: rop:ROP_43750 DNA repair protein RadA~TIGRFAM: DNA repair protein RadA~SMART: AAA ATPase gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0599 Tpau_0600 Tpau_0600 Tpau_0600 623892 624482 - conserved hypothetical protein KEGG: rha:RHA1_ro04458 hypothetical protein gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0600 Tpau_0601 Tpau_0601 Tpau_0601 624817 625305 + transcriptional regulator%2C CarD family PFAM: transcription factor CarD~KEGG: nfa:nfa4350 putative transcriptional regulator gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0601 Tpau_0602 Tpau_0602 Tpau_0602 625302 625964 + 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KEGG: rha:RHA1_ro04460 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0602 Tpau_0603 Tpau_0603 Tpau_0603 625961 626434 + 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase TIGRFAM: 2C-methyl-D-erythritol 2%2C4- cyclodiphosphate synthase~KEGG: mjl:Mjls_5124 2-C-methyl-D-erythritol 2%2C4- cyclodiphosphate synthase~PFAM: MECDP-synthase gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0603 Tpau_0604 Tpau_0604 Tpau_0604 626419 627342 - RarD protein%2C DMT superfamily transporter KEGG: kse:Ksed_21390 RarD protein~TIGRFAM: RarD protein%2C DMT superfamily transporter~PFAM: protein of unknown function DUF6 transmembrane gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0604 Tpau_0605 Tpau_0605 Tpau_0605 627428 628825 + cysteinyl-tRNA synthetase TIGRFAM: cysteinyl-tRNA synthetase~KEGG: rha:RHA1_ro04462 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase class Ia %3B Cysteinyl-tRNA synthetase class Ia DALR%3B tRNA synthetase class I (M) gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0605 Tpau_0606 Tpau_0606 Tpau_0606 628840 629814 + RNA methyltransferase%2C TrmH family%2C group 3 KEGG: nfa:nfa4390 putative tRNA/rRNA methyltransferase~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 3~PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0606 Tpau_0607 Tpau_0607 Tpau_0607 629868 630452 + putative transcriptional regulator%2C TetR family KEGG: rop:ROP_63290 putative TetR family transcriptional regulator gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0607 Tpau_0608 Tpau_0608 Tpau_0608 630461 631222 - LamB/YcsF family protein PFAM: LamB/YcsF family protein~KEGG: rer:RER_07000 hypothetical protein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0608 Tpau_0609 Tpau_0609 Tpau_0609 631233 632117 - ABC-3 protein PFAM: ABC-3 protein~KEGG: rop:ROP_44050 putative ABC transporter permease protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0609 Tpau_0610 Tpau_0610 Tpau_0610 632118 632864 - ABC transporter related protein KEGG: nfa:nfa4440 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0610 Tpau_0611 Tpau_0611 Tpau_0611 632861 633757 - periplasmic solute binding protein PFAM: periplasmic solute binding protein~KEGG: rop:ROP_44070 putative ABC transporter substrate-binding protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0611 Tpau_0612 Tpau_0612 Tpau_0612 633836 634261 - conserved hypothetical protein KEGG: mgi:Mflv_3147 hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0612 Tpau_0613 Tpau_0613 Tpau_0613 634359 634916 + transcriptional regulator%2C PadR-like family PFAM: Transcriptional regulator PadR-like%3B transcriptional regulator PadR family protein~KEGG: mav:MAV_0135 transcriptional regulator%2C PadR family protein gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0613 Tpau_0614 Tpau_0614 Tpau_0614 634921 635544 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: chl:Chy400_0736 lysine exporter protein (LysE/YggA) gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0614 Tpau_0615 Tpau_0615 Tpau_0615 635625 636392 + protocatechuate 3%2C4-dioxygenase%2C beta subunit KEGG: ach:Achl_3854 protocatechuate 3%2C4- dioxygenase%2C beta subunit~TIGRFAM: protocatechuate 3%2C4-dioxygenase%2C beta subunit~PFAM: intradiol ring-cleavage dioxygenase gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0615 Tpau_0616 Tpau_0616 Tpau_0616 636389 636988 + protocatechuate 3%2C4-dioxygenase%2C alpha subunit KEGG: art:Arth_4077 protocatechuate 3%2C4- dioxygenase%2C alpha subunit~TIGRFAM: protocatechuate 3%2C4-dioxygenase%2C alpha subunit~PFAM: intradiol ring-cleavage dioxygenase gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0616 Tpau_0617 Tpau_0617 Tpau_0617 636985 638325 + fumarate lyase PFAM: fumarate lyase~KEGG: art:Arth_4076 3-carboxy-cis%2Ccis-muconate cycloisomerase gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0617 Tpau_0618 Tpau_0618 Tpau_0618 638322 639524 + 4-carboxymuconolactone decarboxylase KEGG: nca:Noca_1011 4-carboxymuconolactone decarboxylase~TIGRFAM: 4-carboxymuconolactone decarboxylase~PFAM: Carboxymuconolactone decarboxylase%3B alpha/beta hydrolase fold gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0618 Tpau_0619 Tpau_0619 Tpau_0619 639517 640740 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: aau:AAur_4039 beta-ketoadipyl-CoA thiolase~PFAM: Thiolase gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0619 Tpau_0620 Tpau_0620 Tpau_0620 640740 641402 + 3-oxoacid CoA-transferase%2C A subunit TIGRFAM: 3-oxoacid CoA-transferase%2C A subunit~KEGG: ach:Achl_3848 3-oxoacid CoA-transferase%2C A subunit~PFAM: coenzyme A transferase gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0620 Tpau_0621 Tpau_0621 Tpau_0621 641402 642061 + 3-oxoacid CoA-transferase%2C B subunit TIGRFAM: 3-oxoacid CoA-transferase%2C B subunit~KEGG: art:Arth_4071 butyryl-CoA:acetate CoA transferase~PFAM: coenzyme A transferase gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0621 Tpau_0622 Tpau_0622 Tpau_0622 642115 642921 + transcriptional regulator%2C IclR family TIGRFAM: beta-ketoadipate pathway transcriptional regulators%2C PcaR/PcaU/PobR family~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~KEGG: ach:Achl_3846 transcriptional regulator%2C IclR family~SMART: regulatory protein IclR gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0622 Tpau_0623 Tpau_0623 Tpau_0623 643089 644366 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: sco:SCO7435 transmembrane transport protein gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0623 Tpau_0624 Tpau_0624 Tpau_0624 644373 645344 - Pirin domain protein PFAM: Pirin domain protein~KEGG: mva:Mvan_0099 pirin domain-containing protein gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0624 Tpau_0625 Tpau_0625 Tpau_0625 645623 646222 + hypothetical protein gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0625 Tpau_0626 Tpau_0626 Tpau_0626 646239 647093 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_17460 putative non-heme haloperoxidase gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0626 Tpau_0627 Tpau_0627 Tpau_0627 647104 648420 + UDP-N-acetylglucosamine KEGG: rer:RER_16170 glycosyltransferase MshA~TIGRFAM: UDP-N-acetylglucosamine~PFAM: glycosyl transferase group 1 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0627 Tpau_0628 Tpau_0628 Tpau_0628 648429 648941 + Protein of unknown function DUF2596 PFAM: Protein of unknown function DUF2596~KEGG: rha:RHA1_ro02072 hypothetical protein gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0628 Tpau_0629 Tpau_0629 Tpau_0629 648883 650382 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rha:RHA1_ro10372 major facilitator superfamily multidrug resistance protein gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0629 Tpau_0630 Tpau_0630 Tpau_0630 650517 650984 + hypothetical protein KEGG: rce:RC1_2365 hypothetical protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0630 Tpau_0631 Tpau_0631 Tpau_0631 651044 651823 + glucosamine-6-phosphate isomerase KEGG: rop:ROP_12490 glucosamine-6-phosphate deaminase~TIGRFAM: glucosamine-6-phosphate isomerase~PFAM: glucosamine/galactosamine-6-phosphate isomerase gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0631 Tpau_0632 Tpau_0632 Tpau_0632 651811 652491 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_55150 TetR family transcriptional regulator gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0632 Tpau_0633 Tpau_0633 Tpau_0633 652534 653958 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rer:RER_55160 drug resistance efflux protein gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0633 Tpau_0634 Tpau_0634 Tpau_0634 653968 655092 + protein of unknown function DUF1228 PFAM: protein of unknown function DUF1228%3B major facilitator superfamily MFS_1~KEGG: rop:ROP_05550 hypothetical membrane protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0634 Tpau_0635 Tpau_0635 Tpau_0635 655113 656099 - aldo/keto reductase PFAM: aldo/keto reductase~KEGG: avi:Avi_0153 aldo-keto reductase gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0635 Tpau_0636 Tpau_0636 Tpau_0636 656101 656583 - transcriptional regulator%2C MerR family KEGG: mjl:Mjls_2649 MerR family transcriptional regulator~PFAM: regulatory protein MerR%3B Transcription regulator MerR DNA binding~SMART: regulatory protein MerR gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0636 Tpau_0637 Tpau_0637 Tpau_0637 656638 657225 - protein of unknown function DUF664 PFAM: protein of unknown function DUF664~KEGG: mab:MAB_4436c hypothetical protein gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0637 Tpau_0638 Tpau_0638 Tpau_0638 657309 657722 - pseudogene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0638 Tpau_0639 Tpau_0639 Tpau_0639 657754 658551 - ABC transporter related protein KEGG: rha:RHA1_ro05056 ABC transporter%2C ATP-binding component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0639 Tpau_0640 Tpau_0640 Tpau_0640 658588 659346 + Trans-aconitate 2-methyltransferase KEGG: nca:Noca_3852 trans-aconitate 2- methyltransferase~PFAM: Methyltransferase type 11%3B Methyltransferase type 12 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0640 Tpau_0641 Tpau_0641 Tpau_0641 659336 660265 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: nfa:nfa14310 putative transcriptional regulator gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0641 Tpau_0642 Tpau_0642 Tpau_0642 660295 661563 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rer:RER_47880 drug resistance efflux protein gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0642 Tpau_0643 Tpau_0643 Tpau_0643 661578 662354 + conserved hypothetical protein KEGG: mjl:Mjls_5757 hypothetical protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0643 Tpau_0644 Tpau_0644 Tpau_0644 662358 663596 - conserved hypothetical protein KEGG: sen:SACE_2591 hypothetical protein gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0644 Tpau_0645 Tpau_0645 Tpau_0645 663593 664957 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: lxx:Lxx14520 ABC transporter%2C permease protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0645 Tpau_0646 Tpau_0646 Tpau_0646 664954 665793 - ABC transporter related protein KEGG: lxx:Lxx14530 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0646 Tpau_0647 Tpau_0647 Tpau_0647 665860 666498 - two component transcriptional regulator%2C LuxR family KEGG: cms:CMS_1730 putative two component system response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0647 Tpau_0648 Tpau_0648 Tpau_0648 666495 667733 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: cms:CMS_1731 putative two component sensor kinase gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0648 Tpau_0649 Tpau_0649 Tpau_0649 667794 668645 - methyltransferase KEGG: mva:Mvan_5836 putative methyltransferase~TIGRFAM: methyltransferase~PFAM: O-methyltransferase domain protein gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0649 Tpau_0650 Tpau_0650 Tpau_0650 668721 669329 + TetR family transcriptional regulator KEGG: rha:RHA1_ro04522 TetR family transcriptional regulator gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0650 Tpau_0651 Tpau_0651 Tpau_0651 669335 670081 + phosphoglycerate mutase 1 family TIGRFAM: phosphoglycerate mutase 1 family~KEGG: cjk:jk1912 phosphoglycerate mutase~PFAM: Phosphoglycerate mutase gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0651 Tpau_0652 Tpau_0652 Tpau_0652 670176 670472 + conserved hypothetical protein KEGG: cms:CMS_0423 hypothetical protein gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0652 Tpau_0653 Tpau_0653 Tpau_0653 670529 671722 + histidine kinase KEGG: mab:MAB_4048c sensor-like histidine kinase senX3~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0653 Tpau_0654 Tpau_0654 Tpau_0654 671719 672408 + two component transcriptional regulator%2C winged helix family KEGG: mjl:Mjls_0654 two component transcriptional regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0654 Tpau_0655 Tpau_0655 Tpau_0655 672518 673357 - conserved hypothetical protein KEGG: rop:ROP_17380 hypothetical protein gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0655 Tpau_0656 Tpau_0656 Tpau_0656 673382 674341 + Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase~KEGG: mab:MAB_4013c hypothetical protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0656 Tpau_0657 Tpau_0657 Tpau_0657 674512 675669 + hypothetical protein KEGG: rer:RER_16250 hypothetical protein gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0657 Tpau_0658 Tpau_0658 Tpau_0658 675690 676532 + Xylose isomerase domain protein TIM barrel PFAM: Xylose isomerase domain protein TIM barrel~KEGG: rha:RHA1_ro02063 hypothetical protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0658 Tpau_0659 Tpau_0659 Tpau_0659 676562 677392 + conserved hypothetical protein KEGG: rop:ROP_17330 hypothetical protein gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0659 Tpau_0660 Tpau_0660 Tpau_0660 677404 678219 + pyrroline-5-carboxylate reductase TIGRFAM: pyrroline-5-carboxylate reductase~KEGG: rop:ROP_17320 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase coenzyme F420-dependent gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0660 Tpau_0661 Tpau_0661 Tpau_0661 678348 678590 + DNA binding domain protein%2C excisionase family TIGRFAM: DNA binding domain protein%2C excisionase family~KEGG: rop:ROP_17310 hypothetical protein gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0661 Tpau_0662 Tpau_0662 Tpau_0662 678752 678853 + Protein of unknown function DUF1713 PFAM: Protein of unknown function DUF1713~KEGG: sen:SACE_6957 hypothetical protein gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0662 Tpau_0663 Tpau_0663 Tpau_0663 678962 680047 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain~KEGG: mav:MAV_4649 NAD dependent epimerase/dehydratase family protein gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0663 Tpau_0664 Tpau_0664 Tpau_0664 680062 681132 + phospholipid/glycerol acyltransferase KEGG: rer:RER_16370 hypothetical protein~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0664 Tpau_0665 Tpau_0665 Tpau_0665 681328 682215 - HAD-superfamily subfamily IB hydrolase%2C TIGR01490 KEGG: nfa:nfa51730 hypothetical protein~TIGRFAM: HAD-superfamily subfamily IB hydrolase%2C TIGR01490%3B HAD-superfamily hydrolase%2C subfamily IB (PSPase- like)~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0665 Tpau_0666 Tpau_0666 Tpau_0666 682292 682558 + glutaredoxin 2 PFAM: glutaredoxin 2~KEGG: rop:ROP_17270 hypothetical protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0666 Tpau_0667 Tpau_0667 Tpau_0667 682686 684023 + glutamyl-tRNA reductase TIGRFAM: glutamyl-tRNA reductase~KEGG: rer:RER_16410 glutamyl-tRNA reductase~PFAM: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase-like%3B Shikimate/quinate 5-dehydrogenase gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0667 Tpau_0668 Tpau_0668 Tpau_0668 684016 684972 + porphobilinogen deaminase TIGRFAM: porphobilinogen deaminase~KEGG: nfa:nfa51690 porphobilinogen deaminase~PFAM: Porphobilinogen deaminase gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0668 Tpau_0669 Tpau_0669 Tpau_0669 685067 686770 + Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B Uroporphyrinogen III synthase HEM4~KEGG: nfa:nfa51680 putative uroporphyrin-III C- methyltransferase/uroporphyrinogen-III synthase gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0669 Tpau_0670 Tpau_0670 Tpau_0670 686792 687784 + Porphobilinogen synthase KEGG: rop:ROP_17220 delta-aminolevulinic acid dehydratase~PFAM: delta-aminolevulinic acid dehydratase gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0670 Tpau_0671 Tpau_0671 Tpau_0671 687781 688341 + conserved hypothetical protein KEGG: rop:ROP_17210 hypothetical membrane protein gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0671 Tpau_0672 Tpau_0672 Tpau_0672 688338 688805 + conserved hypothetical protein KEGG: nfa:nfa51640 hypothetical protein gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0672 Tpau_0673 Tpau_0673 Tpau_0673 688822 689298 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: rer:RER_23540 hypothetical protein gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0673 Tpau_0674 Tpau_0674 Tpau_0674 689400 689606 + Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: svi:Svir_36750 copper chaperone gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0674 Tpau_0675 Tpau_0675 Tpau_0675 689642 690265 + conserved hypothetical protein KEGG: mva:Mvan_0658 hypothetical protein gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0675 Tpau_0676 Tpau_0676 Tpau_0676 690551 692761 + MMPL domain protein PFAM: MMPL domain protein~KEGG: msm:MSMEG_5178 integral membrane protein gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0676 Tpau_0677 Tpau_0677 Tpau_0677 692762 693478 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: msm:MSMEG_5177 regulatory protein%2C TetR gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0677 Tpau_0678 Tpau_0678 Tpau_0678 693496 695460 - acyl-CoA oxidase domain protein PFAM: acyl-CoA oxidase domain protein%3B acyl-CoA dehydrogenase domain protein~KEGG: mab:MAB_3588 putative acyl-CoA oxidase gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0678 Tpau_0679 Tpau_0679 Tpau_0679 695512 697065 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: msm:MSMEG_1625 amino acid transporter%2C putative gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0679 Tpau_0680 Tpau_0680 Tpau_0680 697074 698861 - Amidase PFAM: Amidase~KEGG: mkm:Mkms_5239 amidase gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0680 Tpau_0681 Tpau_0681 Tpau_0681 698854 699900 - Agmatine deiminase KEGG: ach:Achl_0059 agmatine deiminase~PFAM: Porphyromonas-type peptidyl-arginine deiminase gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0681 Tpau_0682 Tpau_0682 Tpau_0682 699897 701435 - Putrescine oxidase KEGG: mlu:Mlut_10320 monoamine oxidase~PFAM: amine oxidase%3B FAD dependent oxidoreductase%3B HI0933 family protein gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0682 Tpau_0683 Tpau_0683 Tpau_0683 701731 702462 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR%3B Tetracyclin repressor domain protein~KEGG: mlu:Mlut_10310 transcriptional regulator%2C TetR family gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0683 Tpau_0684 Tpau_0684 Tpau_0684 702450 703970 - Carboxylesterase KEGG: nfa:nfa50190 putative carboxylesterase~PFAM: Carboxylesterase type B gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0684 Tpau_0685 Tpau_0685 Tpau_0685 703967 705433 - acyltransferase%2C WS/DGAT/MGAT KEGG: rha:RHA1_ro06855 hypothetical protein~TIGRFAM: acyltransferase%2C WS/DGAT/MGAT~PFAM: protein of unknown function UPF0089 gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0685 Tpau_0686 Tpau_0686 Tpau_0686 705602 706495 + Taurine dioxygenase KEGG: svi:Svir_18160 probable taurine catabolism dioxygenase~PFAM: Taurine catabolism dioxygenase TauD/TfdA gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0686 Tpau_0687 Tpau_0687 Tpau_0687 706609 707928 + glutamate-1-semialdehyde-2%2C1-aminomutase KEGG: nfa:nfa51600 glutamate-1-semialdehyde aminotransferase~TIGRFAM: glutamate-1-semialdehyde-2%2C1-aminomutase~PFAM: aminotransferase class-III gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0687 Tpau_0688 Tpau_0688 Tpau_0688 707937 708566 + Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: rer:RER_16670 hypothetical protein gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0688 Tpau_0689 Tpau_0689 Tpau_0689 708593 709159 + Redoxin domain protein PFAM: Redoxin domain protein%3B alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: mgi:Mflv_0052 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0689 Tpau_0690 Tpau_0690 Tpau_0690 709159 709944 + cytochrome c biogenesis protein transmembrane region PFAM: cytochrome c biogenesis protein transmembrane region~KEGG: rer:RER_16690 cytochrome c biogenesis protein CcdA gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0690 Tpau_0691 Tpau_0691 Tpau_0691 709944 711566 + ResB family protein PFAM: ResB family protein~KEGG: rer:RER_16700 cytochrome c biogenesis protein ResB gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0691 Tpau_0692 Tpau_0692 Tpau_0692 711567 712559 + cytochrome c-type biogenesis protein CcsB KEGG: rha:RHA1_ro02032 cytochrome c assembly membrane protein~TIGRFAM: cytochrome c-type biogenesis protein CcsB~PFAM: cytochrome c assembly protein gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0692 Tpau_0693 Tpau_0693 Tpau_0693 712627 712866 - DNA binding domain protein%2C excisionase family KEGG: rer:RER_16740 hypothetical protein~TIGRFAM: DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0693 Tpau_0694 Tpau_0694 Tpau_0694 712909 713310 + conserved hypothetical protein KEGG: rer:RER_16750 hypothetical protein gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0694 Tpau_0695 Tpau_0695 Tpau_0695 713307 714401 + Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~KEGG: rha:RHA1_ro02027 cysteine synthase gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0695 Tpau_0696 Tpau_0696 Tpau_0696 714429 714860 - transcriptional regulator%2C MarR family KEGG: bcv:Bcav_0927 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0696 Tpau_0697 Tpau_0697 Tpau_0697 714962 715603 + NAD(P)H dehydrogenase (quinone) PFAM: NAD(P)H dehydrogenase (quinone)~KEGG: kra:Krad_0234 NAD(P)H dehydrogenase (quinone) gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0697 Tpau_0698 Tpau_0698 Tpau_0698 715639 716115 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: sen:SACE_5162 acetyltransferase gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0698 Tpau_0699 Tpau_0699 Tpau_0699 716128 717066 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: sco:SCO0235 short chain dehydrogenase gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0699 Tpau_0700 Tpau_0700 Tpau_0700 717198 718037 + transcriptional regulator%2C XRE family SMART: helix-turn-helix domain protein~KEGG: sco:SCO0233 DNA-binding protein gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0700 Tpau_0701 Tpau_0701 Tpau_0701 718051 718926 - 1%2C4-dihydroxy-2-naphthoateoctaprenyltransferase KEGG: rer:RER_16820 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~TIGRFAM: 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~PFAM: UbiA prenyltransferase gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0701 Tpau_0702 Tpau_0702 Tpau_0702 718978 720798 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: rha:RHA1_ro02736 acyl CoA dehydrogenase gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0702 Tpau_0703 Tpau_0703 Tpau_0703 720882 722027 - conserved hypothetical protein KEGG: rop:ROP_23560 hypothetical protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0703 Tpau_0704 Tpau_0704 Tpau_0704 722091 723236 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rop:ROP_16850 putative O-succinylbenzoate-- CoA ligase gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0704 Tpau_0705 Tpau_0705 Tpau_0705 723233 723577 - conserved hypothetical protein KEGG: mab:MAB_3951 hypothetical protein gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0705 Tpau_0706 Tpau_0706 Tpau_0706 723684 723998 - conserved hypothetical protein KEGG: mab:MAB_3403c hypothetical protein gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0706 Tpau_0707 Tpau_0707 Tpau_0707 724009 724308 - conserved hypothetical protein KEGG: kra:Krad_0189 hypothetical protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0707 Tpau_0708 Tpau_0708 Tpau_0708 724312 725565 - phosphate transporter PFAM: phosphate transporter~KEGG: cmi:CMM_0453 low affinity phosphate permease gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0708 Tpau_0709 Tpau_0709 Tpau_0709 725771 726910 + transcriptional regulator%2C SARP family KEGG: nfa:nfa53810 putative transcriptional regulator~PFAM: transcriptional activator domain%3B Forkhead- associated protein%3B transcriptional regulator domain protein~SMART: Forkhead-associated protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0709 Tpau_0710 Tpau_0710 Tpau_0710 726963 728144 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: bfa:Bfae_07170 hypothetical protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0710 Tpau_0711 Tpau_0711 Tpau_0711 728186 728614 - histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: nfa:nfa10120 hypothetical protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0711 Tpau_0712 Tpau_0712 Tpau_0712 728741 729316 + hypothetical protein gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0712 Tpau_0713 Tpau_0713 Tpau_0713 729827 730627 + MspA family protein PFAM: MspA family protein~KEGG: mab:MAB_1891 hypothetical protein gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0713 Tpau_0714 Tpau_0714 Tpau_0714 730673 730996 + hypothetical protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0714 Tpau_0715 Tpau_0715 Tpau_0715 731008 731976 + hypothetical protein KEGG: sco:SCO3869 WD-40 repeat-containing protein gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0715 Tpau_0716 Tpau_0716 Tpau_0716 732283 734751 + hypothetical protein KEGG: rer:RER_02690 hypothetical protein gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0716 Tpau_0717 Tpau_0717 Tpau_0717 735736 736662 - naphthoate synthase KEGG: rer:RER_16980 naphthoate synthase~TIGRFAM: naphthoate synthase~PFAM: Enoyl-CoA hydratase/isomerase gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0717 Tpau_0718 Tpau_0718 Tpau_0718 736730 737617 + low-density lipoprotein receptor YWTD repeat protein SMART: low-density lipoprotein receptor YWTD repeat~KEGG: mab:MAB_0760c hypothetical protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0718 Tpau_0719 Tpau_0719 Tpau_0719 737642 738505 + 3-hydroxyacyl-CoA dehydrogenase domain protein PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein%3B 3-hydroxyacyl-CoA dehydrogenase NAD-binding~KEGG: mmi:MMAR_1322 3-hydroxybutyryl-CoA dehydrogenase FadB3 gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0719 Tpau_0720 Tpau_0720 Tpau_0720 738527 739507 + Mandelate racemase/muconate lactonizing protein PFAM: Mandelate racemase/muconate lactonizing protein~KEGG: rer:RER_17000 O-succinylbenzoate synthase gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0720 Tpau_0721 Tpau_0721 Tpau_0721 739521 740012 - hypothetical protein KEGG: lrf:LAR_1283 hypothetical protein gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0721 Tpau_0722 Tpau_0722 Tpau_0722 740079 740561 + conserved hypothetical protein KEGG: nfa:nfa11310 hypothetical protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0722 Tpau_0723 Tpau_0723 Tpau_0723 740577 740744 - conserved hypothetical protein KEGG: nfa:pnf2683 hypothetical protein gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0723 Tpau_0724 Tpau_0724 Tpau_0724 740835 742991 - MMPL domain protein PFAM: MMPL domain protein~KEGG: nca:Noca_0144 MmpL domain-containing protein gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0724 Tpau_0725 Tpau_0725 Tpau_0725 743119 743379 + protein of unknown function DUF156 PFAM: protein of unknown function DUF156~KEGG: nfa:nfa41000 hypothetical protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0725 Tpau_0726 Tpau_0726 Tpau_0726 743419 744684 - Saccharopine dehydrogenase PFAM: Saccharopine dehydrogenase~KEGG: rha:RHA1_ro00897 hypothetical protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0726 Tpau_0727 Tpau_0727 Tpau_0727 744681 745784 - membrane protein AbrB duplication KEGG: msm:MSMEG_1698 putative ammonia monooxygenase superfamily protein~TIGRFAM: membrane protein AbrB duplication~PFAM: putative ammonia monooxygenase gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0727 Tpau_0728 Tpau_0728 Tpau_0728 745847 746275 + transcriptional regulator%2C MarR family KEGG: mkm:Mkms_1259 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0728 Tpau_0729 Tpau_0729 Tpau_0729 746317 747963 + thiamine pyrophosphate protein TPP binding domain protein PFAM: thiamine pyrophosphate protein TPP binding domain protein~KEGG: nfa:nfa51330 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate synthase gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0729 Tpau_0730 Tpau_0730 Tpau_0730 747960 748442 + hypothetical protein KEGG: rer:RER_17050 hypothetical protein gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0730 Tpau_0731 Tpau_0731 Tpau_0731 748481 749635 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: rop:ROP_16690 mannosyltransferase MgtA gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0731 Tpau_0732 Tpau_0732 Tpau_0732 749646 750335 + ubiquinone/menaquinone biosynthesis methyltransferase KEGG: mgi:Mflv_5258 ubiquinone/menaquinone biosynthesis methyltransferase~TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase~PFAM: UbiE/COQ5 methyltransferase%3B Methyltransferase type 11%3B Methyltransferase type 12 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0732 Tpau_0733 Tpau_0733 Tpau_0733 750352 751332 + Trans-hexaprenyltranstransferase KEGG: rha:RHA1_ro01991 polyprenyl synthetase~PFAM: Polyprenyl synthetase gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0733 Tpau_0734 Tpau_0734 Tpau_0734 751349 752197 + peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: sen:SACE_6884 protease HtpX-like protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0734 Tpau_0735 Tpau_0735 Tpau_0735 752397 753314 + conserved hypothetical protein KEGG: rop:ROP_16860 hypothetical protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0735 Tpau_0736 Tpau_0736 Tpau_0736 753436 753927 - protein of unknown function DUF520 PFAM: protein of unknown function DUF520~KEGG: nfa:nfa51200 putative nucleotide-binding protein gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0736 Tpau_0737 Tpau_0737 Tpau_0737 754462 754629 + ribosomal protein L33 KEGG: mbt:JTY_0653 50S ribosomal protein L33~TIGRFAM: ribosomal protein L33~PFAM: ribosomal protein L33 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0737 Tpau_0738 Tpau_0738 Tpau_0738 754717 755283 + MaoC domain protein dehydratase PFAM: MaoC domain protein dehydratase~KEGG: nfa:nfa51180 hypothetical protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0738 Tpau_0739 Tpau_0739 Tpau_0739 755270 755695 + MaoC domain protein dehydratase PFAM: MaoC domain protein dehydratase~KEGG: rop:ROP_16600 beta-hydroxyacyl-[acyl-carrier- protein] dehydratase subunit HadB gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0739 Tpau_0740 Tpau_0740 Tpau_0740 755961 756338 + preprotein translocase%2C SecE subunit KEGG: mab:MAB_3895c preprotein translocase subunit SecE~TIGRFAM: preprotein translocase%2C SecE subunit~PFAM: protein secE/sec61-gamma protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0740 Tpau_0741 Tpau_0741 Tpau_0741 756382 757212 + NusG antitermination factor TIGRFAM: transcription termination/antitermination factor NusG~PFAM: NGN domain protein~KEGG: rop:ROP_16580 transcription antitermination protein NusG~SMART: NGN domain protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0741 Tpau_0742 Tpau_0742 Tpau_0742 757278 757709 + ribosomal protein L11 TIGRFAM: ribosomal protein L11~PFAM: ribosomal protein L11~KEGG: mgi:Mflv_5116 50S ribosomal protein L11~SMART: ribosomal protein L11 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0742 Tpau_0743 Tpau_0743 Tpau_0743 757807 758520 + ribosomal protein L1 KEGG: rer:RER_17180 50S ribosomal protein L1~TIGRFAM: ribosomal protein L1~PFAM: ribosomal protein L1 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0743 Tpau_0744 Tpau_0744 Tpau_0744 758593 758973 - conserved hypothetical protein KEGG: saq:Sare_0670 hypothetical protein gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0744 Tpau_0745 Tpau_0745 Tpau_0745 758976 759470 - conserved hypothetical protein KEGG: blt:Balat_0249 hypothetical protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0745 Tpau_0746 Tpau_0746 Tpau_0746 759611 760432 + conserved hypothetical protein KEGG: mav:MAV_4996 hypothetical protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0746 Tpau_0747 Tpau_0747 Tpau_0747 760429 761202 + putative membrane glycine and proline rich protein KEGG: mbt:JTY_1130 putative membrane glycine and proline rich protein gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0747 Tpau_0748 Tpau_0748 Tpau_0748 761199 762083 + membrane glycine and proline rich protein KEGG: mul:MUL_0182 membrane glycine and proline rich protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0748 Tpau_0749 Tpau_0749 Tpau_0749 762080 762562 + conserved hypothetical protein KEGG: mkm:Mkms_0152 hypothetical protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0749 Tpau_0750 Tpau_0750 Tpau_0750 762832 763362 + ribosomal protein L10 PFAM: ribosomal protein L10~KEGG: rer:RER_17200 50S ribosomal protein L10 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0750 Tpau_0751 Tpau_0751 Tpau_0751 763435 763830 + ribosomal protein L7/L12 KEGG: rop:ROP_16530 50S ribosomal protein L7/L12~TIGRFAM: ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12 gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0751 Tpau_0752 Tpau_0752 Tpau_0752 764082 765275 + ABC transporter related protein KEGG: nfa:nfa51100 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0752 Tpau_0753 Tpau_0753 Tpau_0753 765706 769218 + DNA-directed RNA polymerase%2C beta subunit TIGRFAM: DNA-directed RNA polymerase%2C beta subunit~KEGG: msm:MSMEG_1367 DNA-directed RNA polymerase subunit beta~PFAM: RNA polymerase Rpb2 domain 6%3B RNA polymerase Rpb2 domain 7%3B RNA polymerase Rpb2 domain 3%3B RNA polymerase Rpb2 domain 2%3B RNA polymerase beta subunit%3B DNA- directed RNA polymerase%2C beta subunit%2C external 1 domain gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0753 Tpau_0754 Tpau_0754 Tpau_0754 769249 773205 + DNA-directed RNA polymerase%2C beta' subunit TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit~PFAM: RNA polymerase Rpb1 domain 1%3B RNA polymerase alpha subunit%3B RNA polymerase Rpb1 domain 5%3B RNA polymerase Rpb1 domain 3%3B RNA polymerase Rpb1 domain 4~KEGG: nfa:nfa50980 DNA-directed RNA polymerase subunit beta'~SMART: RNA polymerase I subunit A domain protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0754 Tpau_0755 Tpau_0755 Tpau_0755 773543 773965 + conserved hypothetical protein KEGG: rop:ROP_03570 hypothetical membrane protein gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0755 Tpau_0756 Tpau_0756 Tpau_0756 774052 774873 - amidohydrolase 2 PFAM: amidohydrolase 2~KEGG: sma:SAV_7286 hypothetical protein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0756 Tpau_0757 Tpau_0757 Tpau_0757 774870 775193 - protein of unknown function DUF718 PFAM: protein of unknown function DUF718~KEGG: sen:SACE_3935 hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0757 Tpau_0758 Tpau_0758 Tpau_0758 775190 776443 - L-lactate dehydrogenase (cytochrome) KEGG: nfa:nfa32960 putative L-lactate dehydrogenase~PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0758 Tpau_0759 Tpau_0759 Tpau_0759 776631 777482 + 5-carboxymethyl-2-hydroxymuconateDelta-isomerase KEGG: sco:SCO2850 2-hydroxyhepta-2%2C4-diene-1%2C7- dioate isomerase~PFAM: fumarylacetoacetate (FAA) hydrolase gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0759 Tpau_0760 Tpau_0760 Tpau_0760 777482 778789 + Mandelate racemase/muconate lactonizing protein PFAM: Mandelate racemase/muconate lactonizing protein~KEGG: kra:Krad_4193 mandelate racemase/muconate lactonizing protein gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0760 Tpau_0761 Tpau_0761 Tpau_0761 778786 779547 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: sma:SAV_7283 dehydrogenase gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0761 Tpau_0762 Tpau_0762 Tpau_0762 779544 780509 + Pyridoxal 4-dehydrogenase KEGG: sma:SAV_7284 oxidoreductase~PFAM: aldo/keto reductase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0762 Tpau_0763 Tpau_0763 Tpau_0763 780545 781264 + GntR domain protein KEGG: cai:Caci_1453 GntR domain protein~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0763 Tpau_0764 Tpau_0764 Tpau_0764 781261 781632 - protein of unknown function DUF307 PFAM: protein of unknown function DUF307~KEGG: ami:Amir_0476 protein of unknown function DUF307 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0764 Tpau_0765 Tpau_0765 Tpau_0765 781700 782038 + conserved hypothetical protein KEGG: nfa:nfa34980 hypothetical protein gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0765 Tpau_0766 Tpau_0766 Tpau_0766 782048 782959 - Helix-turn-helix type 11 domain protein PFAM: Helix-turn-helix type 11 domain protein%3B regulatory protein DeoR%3B protein of unknown function UPF0074~KEGG: rha:RHA1_ro04425 transcriptional regulator gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0766 Tpau_0767 Tpau_0767 Tpau_0767 783022 783600 + pseudogene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0767 Tpau_0768 Tpau_0768 Tpau_0768 783642 784016 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: scl:sce3980 hypothetical protein gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0768 Tpau_0769 Tpau_0769 Tpau_0769 784064 784570 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mjl:Mjls_0139 GCN5-related N- acetyltransferase gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0769 Tpau_0770 Tpau_0770 Tpau_0770 784605 787850 - SNF2-related protein KEGG: rha:RHA1_ro01653 helicase~PFAM: SNF2-related protein%3B zinc finger SWIM domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0770 Tpau_0771 Tpau_0771 Tpau_0771 787920 788819 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: nfa:nfa28680 putative transcriptional regulator gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0771 Tpau_0772 Tpau_0772 Tpau_0772 788942 790294 + General substrate transporter PFAM: General substrate transporter%3B major facilitator superfamily MFS_1~KEGG: rop:ROP_48690 putative MFS transporter gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0772 Tpau_0773 Tpau_0773 Tpau_0773 790291 791022 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: krh:KRH_02330 3-hydroxybutyrate dehydrogenase gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0773 Tpau_0774 Tpau_0774 Tpau_0774 791160 792566 + hypothetical protein KEGG: kra:Krad_1450 acyltransferase 3 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0774 Tpau_0775 Tpau_0775 Tpau_0775 792571 793749 - acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: rer:RER_56240 acetyl-CoA acyltransferase~PFAM: Thiolase gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0775 Tpau_0776 Tpau_0776 Tpau_0776 793924 794298 - conserved hypothetical protein KEGG: fal:FRAAL0902 hypothetical protein gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0776 Tpau_0777 Tpau_0777 Tpau_0777 794309 795172 - transcriptional regulator%2C XRE family SMART: helix-turn-helix domain protein~KEGG: rha:RHA1_ro00561 DNA binding protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0777 Tpau_0778 Tpau_0778 Tpau_0778 795321 796232 + peptidase S15 PFAM: peptidase S15~KEGG: pen:PSEEN2773 alpha/beta fold family hydrolase gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0778 Tpau_0779 Tpau_0779 Tpau_0779 796283 797923 - Glycerone kinase KEGG: mab:MAB_0194 dihydroxyacetone kinase family protein~PFAM: Dak kinase%3B Dak phosphatase gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0779 Tpau_0780 Tpau_0780 Tpau_0780 797934 798365 - putative phosphohistidine phosphatase%2C SixA PFAM: Phosphoglycerate mutase~KEGG: rop:ROP_16360 hypothetical protein gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0780 Tpau_0781 Tpau_0781 Tpau_0781 798376 798828 - putative phosphohistidine phosphatase%2C SixA PFAM: Phosphoglycerate mutase~KEGG: met:M446_6214 putative phosphohistidine phosphatase%2C SixA gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0781 Tpau_0782 Tpau_0782 Tpau_0782 798868 799080 + conserved hypothetical protein KEGG: mul:MUL_2416 hypothetical protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0782 Tpau_0783 Tpau_0783 Tpau_0783 799086 799439 + RNA-binding S4 domain protein KEGG: nfa:nfa55940 hypothetical protein~PFAM: RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0783 Tpau_0784 Tpau_0784 Tpau_0784 799510 800574 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: sen:SACE_2751 hypothetical protein gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0784 Tpau_0785 Tpau_0785 Tpau_0785 800574 801104 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mva:Mvan_2492 GCN5-related N- acetyltransferase gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0785 Tpau_0786 Tpau_0786 Tpau_0786 801005 802624 - adenylate/guanylate cyclase with integral membrane sensor KEGG: mab:MAB_1459c hypothetical protein~PFAM: adenylyl cyclase class-3/4/guanylyl cyclase%3B histidine kinase HAMP region domain protein~SMART: histidine kinase HAMP region domain protein%3B adenylyl cyclase class-3/4/guanylyl cyclase gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0786 Tpau_0787 Tpau_0787 Tpau_0787 802635 803120 - Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein~KEGG: fre:Franean1_4113 activator of HSP90 ATPase 1 family protein gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0787 Tpau_0788 Tpau_0788 Tpau_0788 803117 803491 - transcriptional regulator%2C ArsR family KEGG: fre:Franean1_4112 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0788 Tpau_0789 Tpau_0789 Tpau_0789 803619 805022 + Amidase PFAM: Amidase~KEGG: nfa:nfa33260 amidase gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0789 Tpau_0790 Tpau_0790 Tpau_0790 805025 806476 + polar amino acid ABC transporter%2C inner membrane subunit TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: extracellular solute-binding protein family 3%3B binding-protein-dependent transport systems inner membrane component~KEGG: mkm:Mkms_5030 polar amino acid ABC transporter%2C inner membrane subunit~SMART: extracellular solute-binding protein family 3 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0790 Tpau_0791 Tpau_0791 Tpau_0791 806473 807228 + ABC transporter related protein KEGG: rha:RHA1_ro01895 ABC amino acid transporter%2C ATP-binding component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0791 Tpau_0792 Tpau_0792 Tpau_0792 807271 807906 + pyridoxamine 5'-phosphate oxidase-related FMN- binding protein PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding~KEGG: mjl:Mjls_0718 pyridoxamine 5'-phosphate oxidase-related%2C FMN-binding gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0792 Tpau_0793 Tpau_0793 Tpau_0793 807908 808738 + phenazine biosynthesis protein PhzF family KEGG: nca:Noca_2310 PhzF family phenazine biosynthesis protein~TIGRFAM: phenazine biosynthesis protein PhzF family~PFAM: Phenazine biosynthesis PhzC/PhzF protein gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0793 Tpau_0794 Tpau_0794 Tpau_0794 808781 809929 - N-acetylglucosamine-6-phosphate deacetylase TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase~KEGG: rop:ROP_12500 N-acetylglucosamine-6-phosphate deacetylase~PFAM: amidohydrolase gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0794 Tpau_0795 Tpau_0795 Tpau_0795 809935 811170 - Protein-N(pi)-phosphohistidine--sugarphosphotran sferase KEGG: rha:RHA1_ro01550 protein-N(pi)- phosphohistidine--sugar phosphotransferase~PFAM: phosphotransferase system EIIC gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0795 Tpau_0796 Tpau_0796 Tpau_0796 811274 811501 + Phosphotransferase system EIIB/cysteine%2C phosphorylation site PFAM: Phosphotransferase system EIIB/cysteine%2C phosphorylation site~KEGG: art:Arth_3515 phosphotransferase system PTS%2C EIIB protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0796 Tpau_0797 Tpau_0797 Tpau_0797 811498 811950 + sugar-specific permease EIIA 1 domain protein PFAM: sugar-specific permease EIIA 1 domain~KEGG: kse:Ksed_16940 PTS system N-acetylglucosamine- specific EIIA component gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0797 Tpau_0798 Tpau_0798 Tpau_0798 812176 813459 + conserved hypothetical protein KEGG: rer:RER_07600 hypothetical protein gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0798 Tpau_0799 Tpau_0799 Tpau_0799 813464 814261 + conserved hypothetical protein KEGG: rer:RER_07590 hypothetical protein gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0799 Tpau_0800 Tpau_0800 Tpau_0800 814265 815242 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: rop:ROP_24580 putative oxidoreductase gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0800 Tpau_0801 Tpau_0801 Tpau_0801 815324 816040 - transcriptional regulator%2C GntR family KEGG: rer:RER_39640 GntR family transcriptional regulator~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0801 Tpau_0802 Tpau_0802 Tpau_0802 816134 816715 - putative alkylated DNA repair protein KEGG: nfa:nfa36260 putative alkylated DNA repair protein gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0802 Tpau_0803 Tpau_0803 Tpau_0803 816776 817762 + putative F420-dependent oxidoreductase KEGG: rha:RHA1_ro04948 hypothetical protein~TIGRFAM: probable F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0803 Tpau_0804 Tpau_0804 Tpau_0804 817763 818932 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: nfa:nfa6260 aminotransferase gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0804 Tpau_0805 Tpau_0805 Tpau_0805 818970 820283 + dehydrogenase KEGG: sen:SACE_3726 dehydrogenase gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0805 Tpau_0806 Tpau_0806 Tpau_0806 820290 820667 - hypothetical protein KEGG: SORBIDRAFT_10g027460%3B hypothetical protein gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0806 Tpau_0807 Tpau_0807 Tpau_0807 820788 822488 - HNH endonuclease KEGG: mav:MAV_4456 13e12 repeat-containing protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0807 Tpau_0808 Tpau_0808 Tpau_0808 822637 822924 + hypothetical protein gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0808 Tpau_0809 Tpau_0809 Tpau_0809 822929 824599 - type III restriction protein res subunit KEGG: nfa:nfa6290 putative DNA helicase~PFAM: type III restriction protein res subunit%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0809 Tpau_0810 Tpau_0810 Tpau_0810 824600 825295 - hypothetical protein KEGG: bay:RBAM_002560 YqeB gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0810 Tpau_0811 Tpau_0811 Tpau_0811 825292 825876 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_1576 TetR family transcriptional regulator gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0811 Tpau_0812 Tpau_0812 Tpau_0812 825912 826322 - hypothetical protein KEGG: rca:Rcas_0275 hypothetical protein gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0812 Tpau_0813 Tpau_0813 Tpau_0813 826513 826875 + YCII-related protein PFAM: YCII-related~KEGG: nca:Noca_0396 DGPFAETKE family protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0813 Tpau_0814 Tpau_0814 Tpau_0814 826872 828083 + putative RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: nca:Noca_4614 sigma-70 region 2 domain- containing protein~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70 region 4 type 2%3B sigma-70 region 2 domain protein gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0814 Tpau_0815 Tpau_0815 Tpau_0815 828085 830265 - conserved hypothetical protein KEGG: rer:RER_46410 hypothetical protein gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0815 Tpau_0816 Tpau_0816 Tpau_0816 830305 830493 + conserved hypothetical protein KEGG: mab:MAB_0863 hypothetical protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0816 Tpau_0817 Tpau_0817 Tpau_0817 830495 830965 + molybdenum cofactor biosynthesis protein C KEGG: sen:SACE_0564 molybdenum cofactor biosynthesis protein~TIGRFAM: molybdenum cofactor biosynthesis protein C~PFAM: molybdopterin cofactor biosynthesis MoaC region gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0817 Tpau_0818 Tpau_0818 Tpau_0818 830958 831461 + molybdenum cofactor synthesis domain protein KEGG: mab:MAB_0865 molybdopterin biosynthesis protein Mog~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: molybdopterin binding domain gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0818 Tpau_0819 Tpau_0819 Tpau_0819 831454 831879 + molybdopterin biosynthesis MoaE protein PFAM: molybdopterin biosynthesis MoaE protein~KEGG: msm:MSMEG_5701 molybdopterin converting factor%2C subunit 2 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0819 Tpau_0820 Tpau_0820 Tpau_0820 831911 833107 + glycosyltransferase%2C MGT family KEGG: sen:SACE_4644 putative glycosyltransferase~TIGRFAM: glycosyltransferase%2C MGT family~PFAM: UDP-glucuronosyl/UDP-glucosyltransferase gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0820 Tpau_0821 Tpau_0821 Tpau_0821 833203 833871 - Transglycosylase domain protein PFAM: Transglycosylase domain protein~KEGG: nfa:nfa6370 hypothetical protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0821 Tpau_0822 Tpau_0822 Tpau_0822 834038 834277 - thiamineS protein PFAM: thiamineS protein~KEGG: mab:MAB_0870c putative molybdenum cofactor biosynthesis protein D2 (MoaD2) / thiamineS gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0822 Tpau_0823 Tpau_0823 Tpau_0823 834281 835309 - molybdenum cofactor biosynthesis protein A TIGRFAM: molybdenum cofactor biosynthesis protein A~PFAM: molybdenum cofactor synthesis domain protein%3B Radical SAM domain protein~KEGG: mab:MAB_0871c molybdenum cofactor biosynthesis protein A~SMART: Elongator protein 3/MiaB/NifB gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0823 Tpau_0824 Tpau_0824 Tpau_0824 835319 835534 - hypothetical protein KEGG: nfa:nfa6380 hypothetical protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0824 Tpau_0825 Tpau_0825 Tpau_0825 835611 836030 + cold-shock DNA-binding domain protein KEGG: rop:ROP_50310 cold shock protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0825 Tpau_0826 Tpau_0826 Tpau_0826 836031 836243 - hypothetical protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0826 Tpau_0827 Tpau_0827 Tpau_0827 836246 836779 - hypothetical protein KEGG: rop:ROP_50320 hypothetical protein gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0827 Tpau_0828 Tpau_0828 Tpau_0828 836780 838462 - major facilitator superfamily transporter KEGG: mva:Mvan_5040 major facilitator superfamily transporter gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0828 Tpau_0829 Tpau_0829 Tpau_0829 838546 839274 + conserved hypothetical protein KEGG: nfa:nfa6430 hypothetical protein gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0829 Tpau_0830 Tpau_0830 Tpau_0830 839276 841819 + conserved hypothetical protein KEGG: nfa:nfa6440 hypothetical protein gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0830 Tpau_0831 Tpau_0831 Tpau_0831 841816 842415 + phosphoesterase PA-phosphatase related protein KEGG: rha:RHA1_ro04970 hypothetical protein~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0831 Tpau_0832 Tpau_0832 Tpau_0832 842354 842623 - conserved hypothetical protein KEGG: nfa:nfa6480 hypothetical protein gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0832 Tpau_0833 Tpau_0833 Tpau_0833 842666 843121 + transcriptional regulator%2C MarR family KEGG: nfa:nfa6490 putative transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0833 Tpau_0834 Tpau_0834 Tpau_0834 843270 844421 - conserved hypothetical protein KEGG: mkm:Mkms_2745 hypothetical protein gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0834 Tpau_0835 Tpau_0835 Tpau_0835 844452 845252 + tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase (SpoU)~KEGG: nfa:nfa6510 putative ribosomal RNA methyltransferase gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0835 Tpau_0836 Tpau_0836 Tpau_0836 845257 845532 + conserved hypothetical protein KEGG: rer:RER_46200 hypothetical protein gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0836 Tpau_0837 Tpau_0837 Tpau_0837 845546 846934 - transcriptional regulator%2C GntR family with aminotransferase domain KEGG: fal:FRAAL1414 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B aminotransferase class I and II~SMART: regulatory protein GntR HTH gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0837 Tpau_0838 Tpau_0838 Tpau_0838 847056 847904 + Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: msm:MSMEG_3555 hydrolase gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0838 Tpau_0839 Tpau_0839 Tpau_0839 847915 849336 + dihydropyrimidinase TIGRFAM: dihydropyrimidinase~KEGG: mab:MAB_2817c phenylhydantoinase~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0839 Tpau_0840 Tpau_0840 Tpau_0840 849346 850368 + pseudogene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0840 Tpau_0841 Tpau_0841 Tpau_0841 850370 851692 + aminotransferase class-III PFAM: aminotransferase class-III~KEGG: aau:AAur_1939 hypothetical protein gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0841 Tpau_0842 Tpau_0842 Tpau_0842 851689 853185 + methylmalonate-semialdehyde dehydrogenase KEGG: ami:Amir_2105 methylmalonate-semialdehyde dehydrogenase~TIGRFAM: methylmalonate-semialdehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0842 Tpau_0843 Tpau_0843 Tpau_0843 853207 854673 + permease for cytosine/purines uracil thiamine allantoin PFAM: permease for cytosine/purines uracil thiamine allantoin~KEGG: mab:MAB_2815c NCS1 nucleoside transporter family protein gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0843 Tpau_0844 Tpau_0844 Tpau_0844 854711 855922 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B protein of unknown function DUF894 DitE~KEGG: rer:RER_46240 drug resistance efflux protein gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0844 Tpau_0845 Tpau_0845 Tpau_0845 855985 856743 - conserved hypothetical protein KEGG: rha:RHA1_ro04983 hypothetical protein gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0845 Tpau_0846 Tpau_0846 Tpau_0846 856789 857592 - conserved hypothetical protein KEGG: mab:MAB_0883c hypothetical protein gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0846 Tpau_0847 Tpau_0847 Tpau_0847 857618 858742 - phosphoserine aminotransferase KEGG: rer:RER_46170 phosphoserine aminotransferase~TIGRFAM: phosphoserine aminotransferase~PFAM: aminotransferase class V gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0847 Tpau_0848 Tpau_0848 Tpau_0848 858746 859852 - Citrate (Si)-synthase KEGG: mbt:JTY_0911 citrate synthase II~PFAM: Citrate synthase gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0848 Tpau_0849 Tpau_0849 Tpau_0849 859898 860518 + pyridoxamine 5'-phosphate oxidase TIGRFAM: pyridoxamine 5'-phosphate oxidase~KEGG: mjl:Mjls_4840 pyridoxamine 5'-phosphate oxidase~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding%3B Pyridoxine 5'-phosphate oxidase%2C dimerisation- like gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0849 Tpau_0850 Tpau_0850 Tpau_0850 860646 861872 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rop:ROP_50560 putative MFS transporter gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0850 Tpau_0851 Tpau_0851 Tpau_0851 861913 862827 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: msm:MSMEG_0876 short chain dehydrogenase gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0851 Tpau_0852 Tpau_0852 Tpau_0852 862883 863806 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: msm:MSMEG_0876 short chain dehydrogenase gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0852 Tpau_0853 Tpau_0853 Tpau_0853 863919 864590 + regulatory protein TetR PFAM: regulatory protein TetR~KEGG: sco:SCO0241 transcriptional regulator gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0853 Tpau_0854 Tpau_0854 Tpau_0854 864659 865561 + Aldose 1-epimerase PFAM: Aldose 1-epimerase~KEGG: rha:RHA1_ro04996 aldose 1-epimerase gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0854 Tpau_0855 Tpau_0855 Tpau_0855 865685 866983 + citrate synthase I TIGRFAM: citrate synthase I~KEGG: rha:RHA1_ro04998 type II citrate synthase~PFAM: Citrate synthase gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0855 Tpau_0856 Tpau_0856 Tpau_0856 866980 867393 + peptidylprolyl isomerase FKBP-type PFAM: peptidylprolyl isomerase FKBP-type~KEGG: mgi:Mflv_1740 peptidylprolyl isomerase%2C FKBP- type gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0856 Tpau_0857 Tpau_0857 Tpau_0857 867449 868252 - pyridoxamine 5'-phosphate oxidase-related FMN- binding protein PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding%3B Protein of unknown function DUF2470~KEGG: mab:MAB_1906 pyridoxamine 5'-phosphate oxidase-related gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0857 Tpau_0858 Tpau_0858 Tpau_0858 868340 869581 + Mn2+/Fe2+ transporter%2C NRAMP family KEGG: lxx:Lxx20950 transport protein~TIGRFAM: Mn2+/Fe2+ transporter%2C NRAMP family~PFAM: natural resistance-associated macrophage protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0858 Tpau_0859 Tpau_0859 Tpau_0859 869670 870194 + hypothetical protein KEGG: mva:Mvan_3404 hypothetical protein gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0859 Tpau_0860 Tpau_0860 Tpau_0860 870210 871739 - carboxyl transferase PFAM: carboxyl transferase~KEGG: rer:RER_45670 acetyl-CoA carboxylase beta chain gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0860 Tpau_0861 Tpau_0861 Tpau_0861 871838 872662 + aldo/keto reductase PFAM: aldo/keto reductase~KEGG: mab:MAB_1528c oxidoreductase gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0861 Tpau_0862 Tpau_0862 Tpau_0862 872665 873111 + protein of unknown function DUF985 PFAM: protein of unknown function DUF985~KEGG: fal:FRAAL5908 hypothetical protein gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0862 Tpau_0863 Tpau_0863 Tpau_0863 873113 874399 - peptidase S8 and S53 subtilisin kexin sedolisin PFAM: peptidase S8 and S53 subtilisin kexin sedolisin~KEGG: nfa:nfa8280 putative protease gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0863 Tpau_0864 Tpau_0864 Tpau_0864 874399 875892 - secretion protein snm4 KEGG: nfa:nfa8270 hypothetical protein~TIGRFAM: secretion protein snm4~PFAM: protein of unknown function DUF571 gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0864 Tpau_0865 Tpau_0865 Tpau_0865 876080 880087 + cell division FtsK/SpoIIIE KEGG: nfa:nfa8290 putative FtsK/SpoIIIE family protein~PFAM: cell divisionFtsK/SpoIIIE~SMART: AAA ATPase gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0865 Tpau_0866 Tpau_0866 Tpau_0866 880084 882955 - pseudogene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0866 Tpau_0867 Tpau_0867 Tpau_0867 880873 882087 - transposase IS116/IS110/IS902 family protein PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~KEGG: sen:SACE_4185 hypothetical protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0867 Tpau_0868 Tpau_0868 Tpau_0868 882978 884357 - conserved hypothetical protein KEGG: mab:MAB_4706c hypothetical protein gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0868 Tpau_0869 Tpau_0869 Tpau_0869 884640 885086 + ribosomal protein L13 KEGG: rha:RHA1_ro06170 50S ribosomal protein L13~TIGRFAM: ribosomal protein L13~PFAM: ribosomal protein L13 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0869 Tpau_0870 Tpau_0870 Tpau_0870 885083 885586 + ribosomal protein S9 PFAM: ribosomal protein S9~KEGG: rop:ROP_62310 30S ribosomal protein S9 gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0870 Tpau_0871 Tpau_0871 Tpau_0871 885681 887015 + phosphoglucosamine mutase TIGRFAM: phosphoglucosamine mutase~KEGG: rha:RHA1_ro06173 phosphoglucosamine mutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase %3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0871 Tpau_0872 Tpau_0872 Tpau_0872 887058 887750 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: rha:RHA1_ro02529 hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0872 Tpau_0873 Tpau_0873 Tpau_0873 887811 888131 + conserved hypothetical protein KEGG: hypothetical protein gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0873 Tpau_0874 Tpau_0874 Tpau_0874 888124 889773 + hypothetical protein KEGG: bld:BLi00801 hypothetical protein gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0874 Tpau_0875 Tpau_0875 Tpau_0875 889782 889964 + hypothetical protein gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0875 Tpau_0876 Tpau_0876 Tpau_0876 889969 890823 - conserved hypothetical protein KEGG: mbt:JTY_3504 hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0876 Tpau_0877 Tpau_0877 Tpau_0877 890844 892259 + carbohydrate kinase%2C YjeF related protein KEGG: rer:RER_19130 hypothetical protein~TIGRFAM: carbohydrate kinase%2C YjeF related protein~PFAM: protein of unknown function UPF0031%3B YjeF- family domain protein gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0877 Tpau_0878 Tpau_0878 Tpau_0878 892264 893406 + alanine racemase TIGRFAM: alanine racemase~KEGG: rop:ROP_62400 alanine racemase~PFAM: alanine racemase domain protein gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0878 Tpau_0879 Tpau_0879 Tpau_0879 893403 894452 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: mab:MAB_3738c putative hydrolase alpha/beta fold gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0879 Tpau_0880 Tpau_0880 Tpau_0880 894449 894895 + protein of unknown function UPF0079 PFAM: protein of unknown function UPF0079~KEGG: rha:RHA1_ro06182 hypothetical protein gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0880 Tpau_0881 Tpau_0881 Tpau_0881 895078 902007 + hypothetical protein KEGG: spn:SP_1772 cell wall surface anchor family protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0881 Tpau_0882 Tpau_0882 Tpau_0882 902015 902650 - pterin-4-alpha-carbinolamine dehydratase KEGG: nca:Noca_3393 pterin-4-alpha-carbinolamine dehydratase gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0882 Tpau_0883 Tpau_0883 Tpau_0883 902757 903332 + peptidase M22 glycoprotease PFAM: peptidase M22 glycoprotease~KEGG: nfa:nfa8820 hypothetical protein gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0883 Tpau_0884 Tpau_0884 Tpau_0884 903325 903810 + ribosomal-protein-alanine acetyltransferase KEGG: rha:RHA1_ro06184 acetyltransferase~TIGRFAM: ribosomal-protein-alanine acetyltransferase~PFAM: GCN5-related N-acetyltransferase gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0884 Tpau_0885 Tpau_0885 Tpau_0885 903807 904841 + metalloendopeptidase%2C glycoprotease family TIGRFAM: metalloendopeptidase%2C glycoprotease family~KEGG: rop:ROP_62450 O-sialoglycoprotein endopeptidase~PFAM: peptidase M22 glycoprotease gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0885 Tpau_0886 Tpau_0886 Tpau_0886 904846 905274 - transcriptional regulator%2C MarR family KEGG: sgr:SGR_4034 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0886 Tpau_0887 Tpau_0887 Tpau_0887 905404 906888 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sco:SCO7346 membrane transport protein gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0887 Tpau_0888 Tpau_0888 Tpau_0888 906936 908741 + conserved hypothetical protein KEGG: mva:Mvan_2837 hypothetical protein gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0888 Tpau_0889 Tpau_0889 Tpau_0889 908761 909480 - transcriptional regulator%2C AraC family KEGG: mab:MAB_0767c AraC family transcriptional regulator~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0889 Tpau_0890 Tpau_0890 Tpau_0890 909704 910399 + conserved hypothetical protein KEGG: mab:MAB_0768 hypothetical protein gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0890 Tpau_0891 Tpau_0891 Tpau_0891 910422 910892 - transcriptional regulator%2C MarR family KEGG: sco:SCO1069 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0891 Tpau_0892 Tpau_0892 Tpau_0892 910958 912484 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: nfa:nfa2050 putative transporter gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0892 Tpau_0893 Tpau_0893 Tpau_0893 912438 912866 - hypothetical protein KEGG: msm:MSMEG_6323 hypothetical protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0893 Tpau_0894 Tpau_0894 Tpau_0894 912944 913780 + transcriptional regulator%2C XRE family KEGG: rpa:RPA3869 XRE family transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0894 Tpau_0895 Tpau_0895 Tpau_0895 913848 914909 + Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase%3B Twin- arginine translocation pathway%2C signal sequence%2C subgroup~KEGG: rer:RER_56610 hypothetical protein gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0895 Tpau_0896 Tpau_0896 Tpau_0896 914978 916192 - transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0896 Tpau_0897 Tpau_0897 Tpau_0897 916463 917827 + conserved hypothetical protein KEGG: abo:ABO_0057 hypothetical protein gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0897 Tpau_0898 Tpau_0898 Tpau_0898 917995 918294 + chaperonin Cpn10 PFAM: chaperonin Cpn10~KEGG: rop:ROP_62490 10 kDa chaperonin gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0898 Tpau_0899 Tpau_0899 Tpau_0899 918376 919989 + chaperonin GroEL KEGG: nfa:nfa8870 chaperonin GroEL~TIGRFAM: chaperonin GroEL~PFAM: chaperonin Cpn60/TCP-1 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0899 Tpau_0900 Tpau_0900 Tpau_0900 920092 920946 + luciferase-like protein KEGG: mab:MAB_2114c luciferase-like gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0900 Tpau_0901 Tpau_0901 Tpau_0901 920956 921252 - transcription factor WhiB PFAM: transcription factor WhiB~KEGG: mab:MAB_3726 WhiB family transcriptional regulator gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0901 Tpau_0902 Tpau_0902 Tpau_0902 921599 922474 + conserved hypothetical protein KEGG: mab:MAB_3725c hypothetical protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0902 Tpau_0903 Tpau_0903 Tpau_0903 922495 923067 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: nfa:nfa8920 RNA polymerase sigma factor SigD~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70 region 4 type 2%3B sigma-70 region 2 domain protein%3B sigma-70 region 4 domain protein gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0903 Tpau_0904 Tpau_0904 Tpau_0904 923067 924176 + hypothetical protein KEGG: rer:RER_19310 hypothetical protein gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0904 Tpau_0905 Tpau_0905 Tpau_0905 924237 924626 - conserved hypothetical protein KEGG: mgi:Mflv_4910 hypothetical protein gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0905 Tpau_0906 Tpau_0906 Tpau_0906 924711 926255 + inosine-5'-monophosphate dehydrogenase SMART: CBS domain containing protein~TIGRFAM: inosine-5'-monophosphate dehydrogenase~KEGG: rer:RER_19330 inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B CBS domain containing protein gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0906 Tpau_0907 Tpau_0907 Tpau_0907 926319 927485 + IMP dehydrogenase family protein TIGRFAM: IMP dehydrogenase family protein~KEGG: rha:RHA1_ro06200 inosine 5-monophosphate dehydrogenase gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0907 Tpau_0908 Tpau_0908 Tpau_0908 927633 929366 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase%3B glucose- methanol-choline oxidoreductase~KEGG: rer:RER_19350 hypothetical protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0908 Tpau_0909 Tpau_0909 Tpau_0909 929460 930113 + conserved hypothetical protein KEGG: bcv:Bcav_0529 hypothetical protein gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0909 Tpau_0910 Tpau_0910 Tpau_0910 930138 931697 + GMP synthase%2C large subunit KEGG: rop:ROP_62620 GMP synthetase~TIGRFAM: GMP synthase%2C large subunit%3B GMP synthase%2C small subunit~PFAM: GMP synthase domain protein%3B glutamine amidotransferase class-I gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0910 Tpau_0911 Tpau_0911 Tpau_0911 931738 932547 + NmrA family protein PFAM: NmrA family protein~KEGG: rop:ROP_40780 hypothetical protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0911 Tpau_0912 Tpau_0912 Tpau_0912 932617 932868 - hypothetical protein KEGG: rer:RER_19390 hypothetical protein gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0912 Tpau_0913 Tpau_0913 Tpau_0913 932858 934261 - phage shock protein C%2C PspC PFAM: PspC domain protein~KEGG: nfa:nfa9000 hypothetical protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0913 Tpau_0914 Tpau_0914 Tpau_0914 934415 935815 + putative signal transduction histidine kinase PFAM: PspC domain protein%3B ATP-binding region ATPase domain protein~KEGG: rop:ROP_62650 putative two-component histidine kinase gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0914 Tpau_0915 Tpau_0915 Tpau_0915 935812 936483 + two component transcriptional regulator%2C LuxR family KEGG: nfa:nfa9030 putative two-component system response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2%3B Bacterio-opsin activator HTH domain protein~SMART: regulatory protein LuxR%3B response regulator receiver gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0915 Tpau_0916 Tpau_0916 Tpau_0916 936488 937645 - serine/threonine protein kinase KEGG: rop:ROP_62710 putative serine/threonine protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0916 Tpau_0917 Tpau_0917 Tpau_0917 937662 938210 - protein of unknown function DUF1470 PFAM: protein of unknown function DUF1470~KEGG: stp:Strop_4227 hypothetical protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0917 Tpau_0918 Tpau_0918 Tpau_0918 938260 939762 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: mlu:Mlut_00990 amino acid transporter gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0918 Tpau_0919 Tpau_0919 Tpau_0919 939936 942077 + conserved hypothetical protein KEGG: cai:Caci_5177 hypothetical protein gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0919 Tpau_0920 Tpau_0920 Tpau_0920 942074 942787 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: ace:Acel_0687 short-chain dehydrogenase/reductase SDR gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0920 Tpau_0921 Tpau_0921 Tpau_0921 942784 943836 + Threonine aldolase KEGG: mlu:Mlut_01000 L-threonine aldolase~PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0921 Tpau_0922 Tpau_0922 Tpau_0922 944059 944784 + conserved hypothetical protein KEGG: rha:RHA1_ro06212 hypothetical protein gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0922 Tpau_0923 Tpau_0923 Tpau_0923 944781 946364 + conserved hypothetical protein KEGG: rop:ROP_62730 hypothetical protein gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0923 Tpau_0924 Tpau_0924 Tpau_0924 946372 947673 - hypothetical protein KEGG: snm:SP70585_1816 cell wall surface anchor family protein gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0924 Tpau_0925 Tpau_0925 Tpau_0925 947763 949028 - proteinase inhibitor I4 serpin KEGG: art:Arth_0592 proteinase inhibitor I4%2C serpin~PFAM: proteinase inhibitor I4 serpin~SMART: proteinase inhibitor I4 serpin gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0925 Tpau_0926 Tpau_0926 Tpau_0926 949082 950158 - amidohydrolase 2 PFAM: amidohydrolase 2~KEGG: sma:SAV_4199 hypothetical protein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0926 Tpau_0927 Tpau_0927 Tpau_0927 950170 950685 + transcriptional regulator%2C MarR family KEGG: sen:SACE_3497 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0927 Tpau_0928 Tpau_0928 Tpau_0928 950635 951611 - pseudogene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0928 Tpau_0929 Tpau_0929 Tpau_0929 951720 952262 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_35340 putative TetR family transcriptional regulator gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0929 Tpau_0930 Tpau_0930 Tpau_0930 952240 952800 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rsa:RSal33209_1228 putative acetyltransferase gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0930 Tpau_0931 Tpau_0931 Tpau_0931 952787 953116 - protein of unknown function UPF0060 PFAM: protein of unknown function UPF0060~KEGG: rop:ROP_66440 hypothetical protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0931 Tpau_0932 Tpau_0932 Tpau_0932 953218 956499 + DNA polymerase III%2C alpha subunit TIGRFAM: DNA polymerase III%2C alpha subunit~PFAM: DNA polymerase III alpha subunit%3B PHP domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~KEGG: rer:RER_19790 error-prone DNA polymerase~SMART: phosphoesterase PHP domain protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0932 Tpau_0933 Tpau_0933 Tpau_0933 956597 956926 + conserved hypothetical protein KEGG: mlo:mll2787 hypothetical protein gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0933 Tpau_0934 Tpau_0934 Tpau_0934 956923 957345 + conserved hypothetical protein KEGG: kra:Krad_0790 hypothetical protein gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0934 Tpau_0935 Tpau_0935 Tpau_0935 957386 958330 - Patatin PFAM: Patatin~KEGG: cai:Caci_2574 patatin gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0935 Tpau_0936 Tpau_0936 Tpau_0936 958327 958923 - conserved hypothetical protein KEGG: rop:ROP_61140 hypothetical membrane protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0936 Tpau_0937 Tpau_0937 Tpau_0937 958984 962370 - pyruvate carboxylase TIGRFAM: pyruvate carboxylase~KEGG: rha:RHA1_ro06517 pyruvate carboxylase~PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B pyruvate carboxyltransferase%3B Conserved carboxylase region%3B biotin/lipoyl attachment domain-containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0937 Tpau_0938 Tpau_0938 Tpau_0938 962835 964718 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: mab:MAB_1509 hypothetical protein gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0938 Tpau_0939 Tpau_0939 Tpau_0939 964719 965183 - tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase (SpoU)~KEGG: msm:MSMEG_1636 RNA methyltransferase%2C TrmH family protein%2C group 2 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0939 Tpau_0940 Tpau_0940 Tpau_0940 965235 965813 - protein of unknown function DUF308 membrane PFAM: protein of unknown function DUF308 membrane~KEGG: nfa:nfa31070 hypothetical protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0940 Tpau_0941 Tpau_0941 Tpau_0941 965883 966767 + Methylenetetrahydrofolate dehydrogenase (NADP(+)) KEGG: rer:RER_19980 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase~PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0941 Tpau_0942 Tpau_0942 Tpau_0942 966767 967081 + hypothetical protein KEGG: fra:Francci3_0659 hypothetical protein gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0942 Tpau_0943 Tpau_0943 Tpau_0943 967207 968613 + hypothetical protein KEGG: rop:ROP_62460 hypothetical protein gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0943 Tpau_0944 Tpau_0944 Tpau_0944 968610 969764 - homoserine O-acetyltransferase TIGRFAM: homoserine O-acetyltransferase~KEGG: mmi:MMAR_1184 homoserine O-acetyltransferase~PFAM: alpha/beta hydrolase fold gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0944 Tpau_0945 Tpau_0945 Tpau_0945 969967 971196 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mab:MAB_1429 major facilitator superfamily permease gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0945 Tpau_0946 Tpau_0946 Tpau_0946 971207 971662 + guanine-specific ribonuclease N1 and T1 PFAM: guanine-specific ribonuclease N1 and T1~KEGG: rer:RER_20080 guanyl-specific ribonuclease gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0946 Tpau_0947 Tpau_0947 Tpau_0947 971659 972090 + hypothetical protein KEGG: fre:Franean1_5433 hypothetical protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0947 Tpau_0948 Tpau_0948 Tpau_0948 972087 972905 + exodeoxyribonuclease III Xth TIGRFAM: exodeoxyribonuclease III Xth%3B exodeoxyribonuclease III~KEGG: nfa:nfa9310 putative exonuclease~PFAM: Endonuclease/exonuclease/phosphatase gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0948 Tpau_0949 Tpau_0949 Tpau_0949 972929 973954 + tryptophanyl-tRNA synthetase TIGRFAM: tryptophanyl-tRNA synthetase~KEGG: nfa:nfa9360 tryptophanyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0949 Tpau_0950 Tpau_0950 Tpau_0950 973985 974983 + ribonuclease KEGG: msm:MSMEG_1658 ribonuclease%2C putative~TIGRFAM: ribonuclease~PFAM: ribonuclease BN gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0950 Tpau_0951 Tpau_0951 Tpau_0951 975003 976487 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: kra:Krad_0773 amino acid permease-associated region gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0951 Tpau_0952 Tpau_0952 Tpau_0952 976488 977786 - peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1~KEGG: nfa:nfa9380 putative penicillin-binding protein gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0952 Tpau_0953 Tpau_0953 Tpau_0953 977815 978249 - transcriptional regulator%2C MarR family KEGG: mkm:Mkms_4541 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0953 Tpau_0954 Tpau_0954 Tpau_0954 978239 979615 - drug resistance transporter%2C EmrB/QacA subfamily KEGG: mab:MAB_0945 EmrB/QacA family drug resistance transporter~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0954 Tpau_0955 Tpau_0955 Tpau_0955 979644 980585 + Sucraseferredoxin family protein PFAM: Sucraseferredoxin family protein~KEGG: rer:RER_19650 hypothetical protein gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0955 Tpau_0956 Tpau_0956 Tpau_0956 980578 981063 + conserved hypothetical protein KEGG: nfa:nfa48300 hypothetical protein gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0956 Tpau_0957 Tpau_0957 Tpau_0957 981098 981712 + transcriptional regulator%2C PadR-like family PFAM: transcriptional regulator PadR family protein~KEGG: rha:RHA1_ro06022 transcriptional regulator gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0957 Tpau_0958 Tpau_0958 Tpau_0958 981699 983234 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: rha:RHA1_ro06023 multidrug efflux transport protein~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0958 Tpau_0959 Tpau_0959 Tpau_0959 983295 984065 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: aau:AAur_3851 putative ABC transporter%2C efflux permease protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0959 Tpau_0960 Tpau_0960 Tpau_0960 984062 984859 - ABC transporter related protein KEGG: ach:Achl_3015 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0960 Tpau_0961 Tpau_0961 Tpau_0961 984886 985731 - conserved hypothetical protein KEGG: rop:ROP_03210 hypothetical protein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0961 Tpau_0962 Tpau_0962 Tpau_0962 985833 986342 - response regulator receiver KEGG: ami:Amir_2083 response regulator receiver gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0962 Tpau_0963 Tpau_0963 Tpau_0963 986456 987604 - conserved hypothetical protein KEGG: sco:SCO0604 hypothetical protein gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0963 Tpau_0964 Tpau_0964 Tpau_0964 987697 988467 - succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: nfa:nfa9460 succinate dehydrogenase iron- sulfur subunit~TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0964 Tpau_0965 Tpau_0965 Tpau_0965 988467 990218 - succinate dehydrogenase or fumarate reductase%2C flavoprotein subunit KEGG: rop:ROP_63050 succinate dehydrogenase flavoprotein subunit~TIGRFAM: succinate dehydrogenase or fumarate reductase%2C flavoprotein subunit%3B succinate dehydrogenase%2C flavoprotein subunit~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0965 Tpau_0966 Tpau_0966 Tpau_0966 990243 990710 - succinate dehydrogenase cytochrome b subunit PFAM: succinate dehydrogenase cytochrome b subunit~KEGG: rop:ROP_63060 succinate dehydrogenase hydrophobic membrane anchor protein gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0966 Tpau_0967 Tpau_0967 Tpau_0967 990722 991126 - succinate dehydrogenase%2C cytochrome b556 subunit KEGG: rop:ROP_63070 succinate dehydrogenase cytochrome b subunit~TIGRFAM: succinate dehydrogenase%2C cytochrome b556 subunit~PFAM: succinate dehydrogenase cytochrome b subunit gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0967 Tpau_0968 Tpau_0968 Tpau_0968 991369 991767 + cytidine deaminase KEGG: mjl:Mjls_1257 cytidine deaminase~TIGRFAM: cytidine deaminase~PFAM: CMP/dCMP deaminase zinc-binding gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0968 Tpau_0969 Tpau_0969 Tpau_0969 991767 993065 + pyrimidine-nucleoside phosphorylase TIGRFAM: pyrimidine-nucleoside phosphorylase~KEGG: nca:Noca_3535 thymidine phosphorylase~PFAM: Pyrimidine nucleoside phosphorylase domain%3B glycosyl transferase family 3%3B Glycosyl transferase%2C family 3-like gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0969 Tpau_0970 Tpau_0970 Tpau_0970 993062 993988 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: svi:Svir_15320 phosphoglycerate dehydrogenase- like oxidoreductase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0970 Tpau_0971 Tpau_0971 Tpau_0971 994087 995340 + integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: ami:Amir_0531 histidine kinase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0971 Tpau_0972 Tpau_0972 Tpau_0972 995352 995978 + two component transcriptional regulator%2C LuxR family KEGG: saq:Sare_0423 two component LuxR family transcriptional regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0972 Tpau_0973 Tpau_0973 Tpau_0973 995960 996319 - hypothetical protein gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0973 Tpau_0974 Tpau_0974 Tpau_0974 996331 997209 - hypothetical protein KEGG: pjd:Pjdr2_3229 phytanoyl-CoA dioxygenase gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0974 Tpau_0975 Tpau_0975 Tpau_0975 997285 998100 + transcriptional regulator%2C AraC family KEGG: cai:Caci_0885 transcriptional regulator%2C AraC family~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0975 Tpau_0976 Tpau_0976 Tpau_0976 998121 999248 + adenosine deaminase TIGRFAM: adenosine deaminase~KEGG: nfa:nfa9530 adenosine deaminase~PFAM: adenosine/AMP deaminase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0976 Tpau_0977 Tpau_0977 Tpau_0977 999255 1000565 - conserved hypothetical protein KEGG: rha:RHA1_ro06252 hypothetical protein gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0977 Tpau_0978 Tpau_0978 Tpau_0978 1000592 1001746 - NLP/P60 protein PFAM: NLP/P60 protein~KEGG: rop:ROP_63140 NlpC/P60 family protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0978 Tpau_0979 Tpau_0979 Tpau_0979 1001743 1002045 - conserved hypothetical protein KEGG: hypothetical protein gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0979 Tpau_0980 Tpau_0980 Tpau_0980 1002136 1002765 + uracil phosphoribosyltransferase TIGRFAM: uracil phosphoribosyltransferase~KEGG: rop:ROP_63160 uracil phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0980 Tpau_0981 Tpau_0981 Tpau_0981 1002776 1003324 - conserved hypothetical protein KEGG: rer:RER_58340 hypothetical protein gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0981 Tpau_0982 Tpau_0982 Tpau_0982 1003321 1004946 - Glucose-1%2C6-bisphosphate synthase KEGG: rop:ROP_63170 putative phosphoglucomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0982 Tpau_0983 Tpau_0983 Tpau_0983 1004947 1005783 - purine nucleotide phosphorylase KEGG: mmc:Mmcs_1244 purine nucleoside phosphorylase~TIGRFAM: purine nucleotide phosphorylase%3B inosine guanosine and xanthosine phosphorylase family~PFAM: purine or other phosphorylase family 1 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0983 Tpau_0984 Tpau_0984 Tpau_0984 1005816 1006526 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rer:RER_20760 enoyl-CoA hydratase gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0984 Tpau_0985 Tpau_0985 Tpau_0985 1006529 1007728 + amidohydrolase KEGG: rer:RER_20770 amidohydrolase~TIGRFAM: amidohydrolase~PFAM: peptidase dimerisation domain protein%3B peptidase M20 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0985 Tpau_0986 Tpau_0986 Tpau_0986 1007725 1008906 + amidohydrolase TIGRFAM: amidohydrolase~KEGG: rop:ROP_63210 putative amidohydrolase~PFAM: peptidase M20 gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0986 Tpau_0987 Tpau_0987 Tpau_0987 1008932 1009918 - transcriptional regulator%2C ArsR family PFAM: regulatory protein ArsR~KEGG: sgr:SGR_2124 ArsR family transcriptional regulator gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0987 Tpau_0988 Tpau_0988 Tpau_0988 1010334 1010834 - AIG2 family protein PFAM: AIG2 family protein~KEGG: rha:RHA1_ro06261 hypothetical protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0988 Tpau_0989 Tpau_0989 Tpau_0989 1010924 1012327 + pyridine nucleotide-disulfide oxidoreductase dimerization region PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase%3B FAD dependent oxidoreductase%3B HI0933 family protein~KEGG: rer:RER_20810 oxidoreductase gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0989 Tpau_0990 Tpau_0990 Tpau_0990 1012334 1013191 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: sco:SCO7112 ECF family RNA polymerase sigma factor~TIGRFAM: RNA polymerase sigma-70 factor%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70 region 4 type 2%3B sigma-70 region 2 domain protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0990 Tpau_0991 Tpau_0991 Tpau_0991 1013269 1014000 + NmrA family protein PFAM: NmrA family protein~KEGG: mjl:Mjls_5307 NmrA family protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0991 Tpau_0992 Tpau_0992 Tpau_0992 1014090 1015256 + putative transcriptional regulator%2C GntR family PFAM: aminotransferase class I and II~KEGG: nfa:nfa9700 putative aminotransferase gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0992 Tpau_0993 Tpau_0993 Tpau_0993 1015356 1017065 + SSS sodium solute transporter superfamily KEGG: msm:MSMEG_3689 sodium:solute symporter~TIGRFAM: SSS sodium solute transporter superfamily~PFAM: Na+/solute symporter gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0993 Tpau_0994 Tpau_0994 Tpau_0994 1017101 1017394 + conserved hypothetical protein KEGG: msm:MSMEG_3688 hypothetical protein gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0994 Tpau_0995 Tpau_0995 Tpau_0995 1017401 1018195 + transcriptional regulator%2C DeoR family KEGG: aau:AAur_3354 DeoR family transcriptional regulator~PFAM: regulatory protein DeoR%3B Helix-turn-helix type 11 domain protein%3B PaaX domain protein~SMART: regulatory protein DeoR gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0995 Tpau_0996 Tpau_0996 Tpau_0996 1018192 1019289 + galactose-1-phosphate uridylyltransferase TIGRFAM: galactose-1-phosphate uridylyltransferase~KEGG: mbt:JTY_0635 putative galactose-1-phosphate uridylyltransferase~PFAM: galactose-1-phosphate uridyl transferase domain protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0996 Tpau_0997 Tpau_0997 Tpau_0997 1019286 1020374 + galactokinase KEGG: mmi:MMAR_0941 galactokinase~TIGRFAM: galactokinase~PFAM: GHMP kinase%3B GHMP kinase domain protein%3B Galactokinase galactose-binding domain gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0997 Tpau_0998 Tpau_0998 Tpau_0998 1020511 1023549 + Beta-galactosidase KEGG: ere:EUBREC_1385 beta-galactosidase~PFAM: glycoside hydrolase family 2 TIM barrel%3B glycoside hydrolase family 2 sugar binding%3B glycoside hydrolase family 42 domain 5 loop region%3B glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0998 Tpau_0999 Tpau_0999 Tpau_0999 1023673 1024617 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rop:ROP_55670 putative ABC transporter permease protein gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_0999 Tpau_1000 Tpau_1000 Tpau_1000 1024614 1025534 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rop:ROP_55660 putative ABC transporter permease protein gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1000 Tpau_1001 Tpau_1001 Tpau_1001 1025531 1026814 - extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1%3B Twin-arginine translocation pathway%2C signal sequence%2C subgroup~KEGG: rop:ROP_55650 putative ABC transporter substrate-binding protein gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1001 Tpau_1002 Tpau_1002 Tpau_1002 1027083 1027694 + ABC transporter related protein KEGG: rop:ROP_55600 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1002 Tpau_1003 Tpau_1003 Tpau_1003 1027734 1028027 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1003 Tpau_1004 Tpau_1004 Tpau_1004 1028027 1028926 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1004 Tpau_1005 Tpau_1005 Tpau_1005 1028939 1029784 - Carbohydrate kinase%2C FGGY-like protein PFAM: Carbohydrate kinase%2C FGGY-like~KEGG: rop:ROP_63250 glycerol kinase gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1005 Tpau_1006 Tpau_1006 Tpau_1006 1029880 1031610 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase%3B monooxygenase FAD-binding~KEGG: mgi:Mflv_4821 FAD dependent oxidoreductase gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1006 Tpau_1007 Tpau_1007 Tpau_1007 1031728 1032711 + protein of unknown function DUF405 PFAM: protein of unknown function DUF405%3B protein of unknown function DUF418~KEGG: sen:SACE_0552 membrane spanning protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1007 Tpau_1008 Tpau_1008 Tpau_1008 1032717 1033841 + integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: ami:Amir_4000 histidine kinase gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1008 Tpau_1009 Tpau_1009 Tpau_1009 1033843 1034487 + two component transcriptional regulator%2C LuxR family KEGG: svi:Svir_39200 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1009 Tpau_1010 Tpau_1010 Tpau_1010 1034491 1035087 - protein of unknown function DUF306 Meta and HslJ PFAM: protein of unknown function DUF306 Meta and HslJ~KEGG: spv:SPH_1885 cell wall surface anchor family protein gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1010 Tpau_1011 Tpau_1011 Tpau_1011 1035132 1036700 - drug resistance transporter%2C EmrB/QacA subfamily KEGG: rha:RHA1_ro05369 major facilitator superfamily multidrug transporter~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1011 Tpau_1012 Tpau_1012 Tpau_1012 1036832 1037275 + Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase%3B cyclase/dehydrase%3B Activator of Hsp90 ATPase 1 family protein~KEGG: nfa:nfa42570 hypothetical protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1012 Tpau_1013 Tpau_1013 Tpau_1013 1037332 1037721 - thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: pen:PSEEN2794 phenylacetic acid degradation protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1013 Tpau_1014 Tpau_1014 Tpau_1014 1037745 1042226 - DEAD/H associated domain protein KEGG: rop:ROP_63320 putative ATP-dependent helicase~PFAM: DEAD/H associated domain protein%3B DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein%3B AAA ATPase gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1014 Tpau_1015 Tpau_1015 Tpau_1015 1042388 1043812 + Carboxylesterase type B PFAM: Carboxylesterase type B~KEGG: sgr:SGR_2081 putative carboxylesterase gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1015 Tpau_1016 Tpau_1016 Tpau_1016 1043974 1044591 + LGFP repeat protein PFAM: LGFP repeat protein~KEGG: car:cauri_0314 putative secreted protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1016 Tpau_1017 Tpau_1017 Tpau_1017 1044593 1046242 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: rha:RHA1_ro04250 acyl-CoA dehydrogenase gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1017 Tpau_1018 Tpau_1018 Tpau_1018 1046263 1046880 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: pla:Plav_0651 TetR family transcriptional regulator gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1018 Tpau_1019 Tpau_1019 Tpau_1019 1046952 1048715 - conserved hypothetical protein KEGG: mab:MAB_0680c hypothetical protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1019 Tpau_1020 Tpau_1020 Tpau_1020 1048817 1049368 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase~KEGG: cef:CE2756 hypothetical protein gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1020 Tpau_1021 Tpau_1021 Tpau_1021 1049506 1050081 + transcriptional regulator%2C XRE family KEGG: aau:AAur_0978 helix-turn-helix domain- containing protein~PFAM: helix-turn-helix domain protein%3B Cupin 2 conserved barrel domain protein~SMART: helix-turn-helix domain protein gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1021 Tpau_1022 Tpau_1022 Tpau_1022 1050181 1050540 - conserved hypothetical protein KEGG: sen:SACE_4361 hypothetical protein gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1022 Tpau_1023 Tpau_1023 Tpau_1023 1050540 1050968 - protein of unknown function DUF1130 PFAM: protein of unknown function DUF1130~KEGG: mpo:Mpop_4371 protein of unknown function DUF1130 gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1023 Tpau_1024 Tpau_1024 Tpau_1024 1050987 1052279 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: lxx:Lxx13880 transposase%2C ISlxx1-degenerated gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1024 Tpau_1025 Tpau_1025 Tpau_1025 1052276 1053118 + IstB domain protein ATP-binding protein KEGG: lxx:Lxx22700 transposase~PFAM: IstB domain protein ATP-binding protein~SMART: AAA ATPase gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1025 Tpau_1026 Tpau_1026 Tpau_1026 1053166 1053312 - hypothetical protein gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1026 Tpau_1027 Tpau_1027 Tpau_1027 1053385 1053780 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: bcv:Bcav_2495 endoribonuclease L-PSP gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1027 Tpau_1028 Tpau_1028 Tpau_1028 1053886 1054857 + Helix-turn-helix type 11 domain protein PFAM: Helix-turn-helix type 11 domain protein%3B regulatory protein DeoR~KEGG: sgr:SGR_6161 DeoR family transcriptional regulator gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1028 Tpau_1029 Tpau_1029 Tpau_1029 1055440 1055844 - conserved hypothetical protein KEGG: mgi:Mflv_5145 hypothetical protein gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1029 Tpau_1030 Tpau_1030 Tpau_1030 1055901 1056128 - conserved hypothetical protein KEGG: mva:Mvan_1663 hypothetical protein gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1030 Tpau_1031 Tpau_1031 Tpau_1031 1056138 1057946 - Carbamoyl-phosphate synthase L chain ATP- binding protein PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B biotin/lipoyl attachment domain-containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein~KEGG: rer:RER_21210 acyl-CoA carboxylase alpha chain gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1031 Tpau_1032 Tpau_1032 Tpau_1032 1058078 1059538 - condensation domain protein PFAM: condensation domain protein~KEGG: rer:RER_47370 hypothetical protein gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1032 Tpau_1033 Tpau_1033 Tpau_1033 1059553 1059987 - Fe-S metabolism associated SufE PFAM: Fe-S metabolism associated SufE~KEGG: msm:MSMEG_1808 Fe-S metabolism associated SufE gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1033 Tpau_1034 Tpau_1034 Tpau_1034 1059984 1060877 - Rhodanese domain protein KEGG: mab:MAB_3641 putative thiosulfate sulfurtransferase~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1034 Tpau_1035 Tpau_1035 Tpau_1035 1060916 1062217 - protein of unknown function UPF0089 PFAM: protein of unknown function UPF0089~KEGG: mav:MAV_4881 hypothetical protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1035 Tpau_1036 Tpau_1036 Tpau_1036 1062214 1063473 - acyltransferase PapA5 KEGG: nfa:nfa14610 acyltransferase PapA5 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1036 Tpau_1037 Tpau_1037 Tpau_1037 1063475 1064863 - Sterol 3-beta-glucosyltransferase KEGG: msm:MSMEG_4740 glycosyltransferase family protein 28~PFAM: glycosyl transferase family 28 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1037 Tpau_1038 Tpau_1038 Tpau_1038 1064860 1065564 - conserved hypothetical protein KEGG: sen:SACE_1411 hypothetical protein gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1038 Tpau_1039 Tpau_1039 Tpau_1039 1065561 1066853 - acyltransferase PapA5 KEGG: nfa:nfa14610 acyltransferase PapA5 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1039 Tpau_1040 Tpau_1040 Tpau_1040 1066876 1068138 - hypothetical protein KEGG: mab:MAB_3092c acyltransferase PapA5 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1040 Tpau_1041 Tpau_1041 Tpau_1041 1068428 1069072 - maf protein KEGG: svi:Svir_05870 MAF protein~TIGRFAM: maf protein~PFAM: Maf family protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1041 Tpau_1042 Tpau_1042 Tpau_1042 1069090 1069365 - hypothetical protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1042 Tpau_1043 Tpau_1043 Tpau_1043 1069362 1071011 - carboxyl transferase PFAM: carboxyl transferase~KEGG: nfa:nfa9940 putative acyl-CoA carboxylase beta subunit gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1043 Tpau_1044 Tpau_1044 Tpau_1044 1071107 1071916 + biotin/acetyl-CoA-carboxylase ligase KEGG: mva:Mvan_1722 biotin--acetyl-CoA-carboxylase ligase~TIGRFAM: biotin/acetyl-CoA-carboxylase ligase~PFAM: biotin/lipoate A/B protein ligase%3B biotin protein ligase domain protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1044 Tpau_1045 Tpau_1045 Tpau_1045 1071926 1072474 + membrane-flanked domain protein PFAM: membrane-flanked domain~KEGG: msm:MSMEG_1818 membrane flanked domain- containing protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1045 Tpau_1046 Tpau_1046 Tpau_1046 1072486 1073178 + two component transcriptional regulator%2C winged helix family KEGG: rop:ROP_63600 putative OmpR family two- component response regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1046 Tpau_1047 Tpau_1047 Tpau_1047 1073192 1074478 - integral membrane sensor signal transduction histidine kinase KEGG: rer:RER_21360 two-component histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1047 Tpau_1048 Tpau_1048 Tpau_1048 1074506 1075090 - GtrA family protein PFAM: GtrA family protein~KEGG: rha:RHA1_ro06298 hypothetical protein gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1048 Tpau_1049 Tpau_1049 Tpau_1049 1075198 1076382 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~KEGG: rha:RHA1_ro06299 phosphoribosylaminoimidazole carboxylase ATPase subunit~PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1049 Tpau_1050 Tpau_1050 Tpau_1050 1076375 1076887 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~KEGG: rha:RHA1_ro06300 phosphoribosylaminoimidazole carboxylase catalytic subunit~PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1050 Tpau_1051 Tpau_1051 Tpau_1051 1076910 1077566 + bifunctional deaminase-reductase domain protein KEGG: ach:Achl_0378 bifunctional deaminase- reductase domain protein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1051 Tpau_1052 Tpau_1052 Tpau_1052 1077605 1079199 - pseudogene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1052 Tpau_1053 Tpau_1053 Tpau_1053 1079538 1080506 - beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: rer:RER_02100 hypothetical protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1053 Tpau_1054 Tpau_1054 Tpau_1054 1080754 1081131 + putative transcriptional regulator%2C XRE family KEGG: rha:RHA1_ro08680 hypothetical protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1054 Tpau_1055 Tpau_1055 Tpau_1055 1081151 1081750 - phosphoesterase PA-phosphatase related protein PFAM: phosphoesterase PA-phosphatase related~KEGG: rha:RHA1_ro08681 hypothetical protein gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1055 Tpau_1056 Tpau_1056 Tpau_1056 1081747 1082793 - conserved hypothetical protein KEGG: rha:RHA1_ro08682 hypothetical protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1056 Tpau_1057 Tpau_1057 Tpau_1057 1082797 1083312 - conserved hypothetical protein KEGG: rha:RHA1_ro08683 hypothetical protein gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1057 Tpau_1058 Tpau_1058 Tpau_1058 1083555 1084715 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mab:MAB_3618c acyl-CoA dehydrogenase FadE gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1058 Tpau_1059 Tpau_1059 Tpau_1059 1084786 1085385 + hypothetical protein KEGG: rer:RER_40920 hypothetical protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1059 Tpau_1060 Tpau_1060 Tpau_1060 1085393 1086079 - conserved hypothetical protein KEGG: rha:RHA1_ro06303 hypothetical protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1060 Tpau_1061 Tpau_1061 Tpau_1061 1086082 1087785 - cell envelope-related transcriptional attenuator KEGG: nfa:nfa46390 putative transcriptional regulator~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: cell envelope-related transcriptional attenuator gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1061 Tpau_1062 Tpau_1062 Tpau_1062 1087929 1088894 + dTDP-4-dehydrorhamnose reductase TIGRFAM: dTDP-4-dehydrorhamnose reductase~KEGG: nfa:nfa46380 putative dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase%3B Male sterility domain%3B NAD-dependent epimerase/dehydratase gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1062 Tpau_1063 Tpau_1063 Tpau_1063 1088899 1089816 + glycosyl transferase family 2 PFAM: glycosyl transferase family 2~KEGG: rop:ROP_63700 dTDP-rhamnose--alpha-D-N- acetylglucosamine-diphosphoryl polyprenol%2C alpha-3-L- rhamnosyl transferase gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1063 Tpau_1064 Tpau_1064 Tpau_1064 1089813 1090904 + Nucleotidyl transferase PFAM: Nucleotidyl transferase%3B transferase hexapeptide repeat containing protein~KEGG: rer:RER_21490 mannose-1-phosphate guanylyltransferase gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1064 Tpau_1065 Tpau_1065 Tpau_1065 1090897 1091673 + lipolytic protein G-D-S-L family PFAM: lipolytic protein G-D-S-L family~KEGG: rer:RER_21500 hypothetical protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1065 Tpau_1066 Tpau_1066 Tpau_1066 1091674 1092336 - O-methyltransferase family 3 PFAM: O-methyltransferase family 3%3B Methyltransferase type 11~KEGG: mgi:Mflv_2199 O-methyltransferase family protein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1066 Tpau_1067 Tpau_1067 Tpau_1067 1092584 1093231 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: nfa:nfa47290 RNA polymerase sigma factor SigE~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2%3B sigma-70 region 4 domain protein gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1067 Tpau_1068 Tpau_1068 Tpau_1068 1093351 1093740 + conserved hypothetical protein KEGG: mab:MAB_1363 hypothetical protein gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1068 Tpau_1069 Tpau_1069 Tpau_1069 1093758 1095251 + PDZ/DHR/GLGF domain protein KEGG: mab:MAB_1364 serine protease HtrA~PFAM: PDZ/DHR/GLGF domain protein%3B peptidase S1 and S6 chymotrypsin/Hap~SMART: PDZ/DHR/GLGF domain protein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1069 Tpau_1070 Tpau_1070 Tpau_1070 1095277 1095756 + twin-arginine translocation protein%2C TatB subunit TIGRFAM: twin-arginine translocation protein%2C TatB subunit~KEGG: nfa:nfa47320 sec-independent translocase gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1070 Tpau_1071 Tpau_1071 Tpau_1071 1095910 1096824 + conserved hypothetical protein KEGG: rop:ROP_16860 hypothetical protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1071 Tpau_1072 Tpau_1072 Tpau_1072 1096922 1097320 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: bcv:Bcav_2132 GCN5-related protein N- acetyltransferase gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1072 Tpau_1073 Tpau_1073 Tpau_1073 1097317 1098453 - ATPase-like%2C ParA/MinD PFAM: ATPase-like%2C ParA/MinD%3B protein of unknown function DUF59~KEGG: nfa:nfa47210 hypothetical protein gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1073 Tpau_1074 Tpau_1074 Tpau_1074 1098488 1099759 - conserved hypothetical protein KEGG: mjl:Mjls_4003 hypothetical protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1074 Tpau_1075 Tpau_1075 Tpau_1075 1099846 1100487 - thymidylate kinase PFAM: thymidylate kinase~KEGG: rop:ROP_63840 thymidylate kinase gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1075 Tpau_1076 Tpau_1076 Tpau_1076 1100540 1101226 + two component transcriptional regulator%2C winged helix family KEGG: mjl:Mjls_1381 two component transcriptional regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1076 Tpau_1077 Tpau_1077 Tpau_1077 1101246 1102910 + integral membrane sensor signal transduction histidine kinase KEGG: rha:RHA1_ro06325 sensor histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1077 Tpau_1078 Tpau_1078 Tpau_1078 1102903 1104687 + Lipoprotein LpqB%2C beta-propeller domain-like protein PFAM: Lipoprotein LpqB%2C beta-propeller domain-like%3B Lipoprotein LpqB%2C GerMN domain~KEGG: rha:RHA1_ro06326 lipoprotein LpqB gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1078 Tpau_1079 Tpau_1079 Tpau_1079 1104717 1105385 + conserved hypothetical protein KEGG: mab:MAB_3585c hypothetical protein gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1079 Tpau_1080 Tpau_1080 Tpau_1080 1105638 1106354 + sigma 54 modulation protein/ribosomal protein S30EA KEGG: rha:RHA1_ro06328 hypothetical protein~TIGRFAM: ribosomal subunit interface protein~PFAM: sigma 54 modulation protein/ribosomal protein S30EA gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1080 Tpau_1081 Tpau_1081 Tpau_1081 1106448 1109201 + preprotein translocase%2C SecA subunit KEGG: nfa:nfa45990 preprotein translocase subunit SecA~TIGRFAM: preprotein translocase%2C SecA subunit~PFAM: SecA DEAD domain protein%3B SecA Wing and Scaffold%3B SecA preprotein cross-linking region gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1081 Tpau_1082 Tpau_1082 Tpau_1082 1109229 1109912 - phospholipid/glycerol acyltransferase KEGG: rop:ROP_41110 putative acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1082 Tpau_1083 Tpau_1083 Tpau_1083 1109998 1110618 - hypothetical protein KEGG: msm:MSMEG_1880 hypothetical protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1083 Tpau_1084 Tpau_1084 Tpau_1084 1110714 1112120 + putative diguanylate cyclase KEGG: rha:RHA1_ro06332 hypothetical protein~TIGRFAM: acyltransferase%2C WS/DGAT/MGAT~PFAM: protein of unknown function UPF0089 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1084 Tpau_1085 Tpau_1085 Tpau_1085 1112117 1112650 + conserved hypothetical protein KEGG: mab:MAB_3550c hypothetical protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1085 Tpau_1086 Tpau_1086 Tpau_1086 1112753 1113349 + conserved hypothetical protein KEGG: mav:MAV_5046 hypothetical protein gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1086 Tpau_1087 Tpau_1087 Tpau_1087 1113431 1114576 + ferredoxin PFAM: ferredoxin%3B oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein~KEGG: rha:RHA1_ro06334 oxidoreductase gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1087 Tpau_1088 Tpau_1088 Tpau_1088 1114685 1115941 + fatty acid desaturase PFAM: fatty acid desaturase~KEGG: rop:ROP_63970 acyl-CoA desaturase DesA3 gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1088 Tpau_1089 Tpau_1089 Tpau_1089 1116006 1116371 - hypothetical protein gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1089 Tpau_1090 Tpau_1090 Tpau_1090 1116647 1117933 + fatty acid desaturase PFAM: fatty acid desaturase~KEGG: nfa:nfa46040 putative fatty acid desaturase gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1090 Tpau_1091 Tpau_1091 Tpau_1091 1117973 1119382 + fatty acid desaturase PFAM: fatty acid desaturase~KEGG: rop:ROP_63970 acyl-CoA desaturase DesA3 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1091 Tpau_1092 Tpau_1092 Tpau_1092 1119487 1120854 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: cag:Cagg_2469 ferredoxin--NADP(+) reductase gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1092 Tpau_1093 Tpau_1093 Tpau_1093 1120931 1121812 + Uncharacterized conserved protein UCP07580 PFAM: Uncharacterised conserved protein UCP07580~KEGG: mjl:Mjls_2904 hypothetical protein gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1093 Tpau_1094 Tpau_1094 Tpau_1094 1121809 1122270 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mab:MAB_4889 GCN5-related N-acetyltransferase gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1094 Tpau_1095 Tpau_1095 Tpau_1095 1122358 1122894 + peptide methionine sulfoxide reductase TIGRFAM: peptide methionine sulfoxide reductase~KEGG: msm:MSMEG_6477 methionine sulfoxide reductase A~PFAM: Methionine sulfoxide reductase A gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1095 Tpau_1096 Tpau_1096 Tpau_1096 1122916 1123908 - GTPase EngC PFAM: GTPase EngC~KEGG: rop:ROP_63980 putative GTPase gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1096 Tpau_1097 Tpau_1097 Tpau_1097 1123905 1125197 - 3-phosphoshikimate 1-carboxyvinyltransferase KEGG: rer:RER_21820 3-phosphoshikimate 1- carboxyvinyltransferase~TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1097 Tpau_1098 Tpau_1098 Tpau_1098 1125269 1126156 + hypothetical protein KEGG: mav:MAV_2859 ModD protein gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1098 Tpau_1099 Tpau_1099 Tpau_1099 1126189 1126644 + transcriptional regulator%2C MerR family TIGRFAM: redox-sensitive transcriptional activator SoxR~PFAM: Transcription regulator MerR DNA binding%3B regulatory protein MerR~KEGG: rha:RHA1_ro05652 redox-sensitive transcriptional activator~SMART: regulatory protein MerR gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1099 Tpau_1100 Tpau_1100 Tpau_1100 1126645 1127409 + protein of unknown function DUF159 PFAM: protein of unknown function DUF159~KEGG: nfa:nfa45870 hypothetical protein gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1100 Tpau_1101 Tpau_1101 Tpau_1101 1127416 1128975 - peptidase S1 and S6 chymotrypsin/Hap KEGG: sco:SCO4985 hypothetical protein~PFAM: peptidase S1 and S6 chymotrypsin/Hap~SMART: peptidase S1 and S6 chymotrypsin/Hap gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1101 Tpau_1102 Tpau_1102 Tpau_1102 1129375 1129749 + hypothetical protein gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1102 Tpau_1103 Tpau_1103 Tpau_1103 1129830 1131182 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: msm:MSMEG_6452 [NADP+] succinate-semialdehyde dehydrogenase gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1103 Tpau_1104 Tpau_1104 Tpau_1104 1131328 1133433 - Male sterility domain protein PFAM: Male sterility domain%3B KR domain protein%3B 3- beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4- dehydrorhamnose reductase%3B short-chain dehydrogenase/reductase SDR%3B NAD-dependent epimerase/dehydratase~KEGG: rha:RHA1_ro06221 short chain dehydrogenase gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1104 Tpau_1105 Tpau_1105 Tpau_1105 1133502 1133990 - ybaK/ebsC protein KEGG: aau:AAur_1805 putative YbaK/EbsC protein~TIGRFAM: ybaK/ebsC protein~PFAM: YbaK/prolyl-tRNA synthetase associated region gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1105 Tpau_1106 Tpau_1106 Tpau_1106 1134090 1134605 + conserved hypothetical protein KEGG: mav:MAV_3285 hypothetical protein gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1106 Tpau_1107 Tpau_1107 Tpau_1107 1134708 1135388 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: rop:ROP_64020 RNA polymerase ECF-type sigma factor SigH~TIGRFAM: RNA polymerase sigma-70 factor%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2%3B sigma-70 region 4 domain protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1107 Tpau_1108 Tpau_1108 Tpau_1108 1135385 1135666 + anti-sigma factor TIGRFAM: anti-sigma factor~KEGG: nfa:nfa45830 putative anti-sigma factor gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1108 Tpau_1109 Tpau_1109 Tpau_1109 1135900 1137405 + signal transduction histidine kinase KEGG: rer:RER_21890 two-component histidine kinase~PFAM: histidine kinase dimerisation/phosphoacceptor%3B PAS fold-4 domain protein%3B ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1109 Tpau_1110 Tpau_1110 Tpau_1110 1137470 1137724 - transcription factor WhiB PFAM: transcription factor WhiB~KEGG: rop:ROP_64060 WhiB family regulatory protein gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1110 Tpau_1111 Tpau_1111 Tpau_1111 1138099 1139094 - diacylglycerol kinase catalytic region KEGG: mab:MAB_3538 hypothetical protein~PFAM: diacylglycerol kinase catalytic region~SMART: diacylglycerol kinase catalytic region gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1111 Tpau_1112 Tpau_1112 Tpau_1112 1139134 1139574 + conserved hypothetical protein KEGG: rha:RHA1_ro06347 hypothetical protein gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1112 Tpau_1113 Tpau_1113 Tpau_1113 1139576 1140196 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: msm:MSMEG_1926 acid phosphatase gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1113 Tpau_1114 Tpau_1114 Tpau_1114 1140234 1141052 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase~KEGG: rop:ROP_64110 putative Soj/ParA-related protein gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1114 Tpau_1115 Tpau_1115 Tpau_1115 1141057 1142295 - conserved hypothetical protein KEGG: rha:RHA1_ro06355 hypothetical protein gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1115 Tpau_1116 Tpau_1116 Tpau_1116 1142325 1142552 - conserved hypothetical protein KEGG: rer:RER_21990 hypothetical protein gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1116 Tpau_1117 Tpau_1117 Tpau_1117 1142609 1143280 - conserved hypothetical protein KEGG: mab:MAB_3530c hypothetical protein gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1117 Tpau_1118 Tpau_1118 Tpau_1118 1143482 1145092 + DEAD/DEAH box helicase domain protein KEGG: rop:ROP_64170 putative ATP-dependent RNA helicase~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1118 Tpau_1119 Tpau_1119 Tpau_1119 1145179 1146324 + protein of unknown function DUF405 PFAM: protein of unknown function DUF405%3B protein of unknown function DUF418~KEGG: nfa:nfa31750 hypothetical protein gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1119 Tpau_1120 Tpau_1120 Tpau_1120 1146340 1147011 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_22000 TetR family transcriptional regulator gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1120 Tpau_1121 Tpau_1121 Tpau_1121 1147122 1148090 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: svi:Svir_06730 predicted hydrolase or acyltransferase of alpha/beta superfamily gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1121 Tpau_1122 Tpau_1122 Tpau_1122 1148143 1149135 + conserved hypothetical protein KEGG: rop:ROP_64210 hypothetical membrane protein gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1122 Tpau_1123 Tpau_1123 Tpau_1123 1149188 1150378 + UBA/THIF-type NAD/FAD binding protein KEGG: mab:MAB_3525c molybdenum cofactor biosynthesis protein MoeB1~PFAM: UBA/THIF-type NAD/FAD binding protein%3B MoeZ/MoeB domain protein%3B Rhodanese domain protein~SMART: Rhodanese domain protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1123 Tpau_1124 Tpau_1124 Tpau_1124 1150382 1151911 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: nfa:nfa30980 acyl-CoA synthetase gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1124 Tpau_1125 Tpau_1125 Tpau_1125 1152007 1152618 - hypothetical protein KEGG: mrd:Mrad2831_3620 hypothetical protein gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1125 Tpau_1126 Tpau_1126 Tpau_1126 1152645 1153085 + conserved hypothetical protein KEGG: sma:SAV_7465 hypothetical protein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1126 Tpau_1127 Tpau_1127 Tpau_1127 1153121 1153975 + conserved hypothetical protein KEGG: mab:MAB_3524c hypothetical protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1127 Tpau_1128 Tpau_1128 Tpau_1128 1153963 1154649 + cobalamin (vitamin B12) biosynthesis CbiX protein PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein~KEGG: rop:ROP_64300 hypothetical protein gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1128 Tpau_1129 Tpau_1129 Tpau_1129 1154637 1154927 - Methylated-DNA-(protein)-cysteine S- methyltransferase DNA binding protein PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding~KEGG: msm:MSMEG_1939 6-O-methylguanine DNA methyltransferase gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1129 Tpau_1130 Tpau_1130 Tpau_1130 1154928 1155692 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_64360 putative hydrolase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1130 Tpau_1131 Tpau_1131 Tpau_1131 1155774 1159058 + UvrD/REP helicase PFAM: UvrD/REP helicase~KEGG: rha:RHA1_ro06375 ATP-dependent DNA helicase gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1131 Tpau_1132 Tpau_1132 Tpau_1132 1159051 1162386 + UvrD/REP helicase PFAM: UvrD/REP helicase~KEGG: rha:RHA1_ro06376 ATP-dependent DNA helicase gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1132 Tpau_1133 Tpau_1133 Tpau_1133 1162532 1163134 + putative hydrolase KEGG: nfa:nfa55080 putative hydrolase gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1133 Tpau_1134 Tpau_1134 Tpau_1134 1163177 1164550 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1134 Tpau_1135 Tpau_1135 Tpau_1135 1164607 1164799 - pseudogene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1135 Tpau_1136 Tpau_1136 Tpau_1136 1164932 1166476 + TAP domain protein PFAM: TAP domain protein~KEGG: nfa:nfa55080 putative hydrolase gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1136 Tpau_1137 Tpau_1137 Tpau_1137 1166484 1166888 - membrane protein KEGG: msm:MSMEG_1944 membrane protein gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1137 Tpau_1138 Tpau_1138 Tpau_1138 1166991 1168091 + TrkA-N domain protein PFAM: TrkA-N domain protein%3B Ion transport 2 domain protein~KEGG: mab:MAB_3514c transmembrane cation transporter gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1138 Tpau_1139 Tpau_1139 Tpau_1139 1168088 1168957 - putative F420-dependent oxidoreductase KEGG: nfa:nfa26880 hypothetical protein~TIGRFAM: probable F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1139 Tpau_1140 Tpau_1140 Tpau_1140 1169071 1170288 + HNH nuclease SMART: HNH nuclease~KEGG: mab:MAB_1907 hypothetical protein gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1140 Tpau_1141 Tpau_1141 Tpau_1141 1170290 1171324 - cation diffusion facilitator family transporter KEGG: bfa:Bfae_18150 cation diffusion facilitator family transporter~TIGRFAM: cation diffusion facilitator family transporter~PFAM: cation efflux protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1141 Tpau_1142 Tpau_1142 Tpau_1142 1171491 1172201 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_48200 putative TetR family transcriptional regulator gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1142 Tpau_1143 Tpau_1143 Tpau_1143 1172245 1172442 - conserved hypothetical protein KEGG: rop:ROP_59930 hypothetical protein gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1143 Tpau_1144 Tpau_1144 Tpau_1144 1172624 1174531 + GTP-binding protein TypA KEGG: rha:RHA1_ro05933 GTP binding elongation factor~TIGRFAM: GTP-binding protein TypA%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1144 Tpau_1145 Tpau_1145 Tpau_1145 1174606 1176474 + extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: nfa:nfa47580 hypothetical protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1145 Tpau_1146 Tpau_1146 Tpau_1146 1176471 1177364 + 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase KEGG: rer:RER_41900 N-acetyl-1-D-myo-Inosityl-2- amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB~TIGRFAM:1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D- glucopyranosidedeacetylase~PFAM: LmbE family protein gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1146 Tpau_1147 Tpau_1147 Tpau_1147 1177361 1177714 + conserved hypothetical protein KEGG: mav:MAV_1311 hypothetical protein gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1147 Tpau_1148 Tpau_1148 Tpau_1148 1177711 1180302 + 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase%2C CofH subunit TIGRFAM: 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase%2C CofH subunit%3B 7%2C8-didemethyl-8-hydroxy-5- deazariboflavin synthase%2C CofG subunit~PFAM: Radical SAM domain protein~KEGG: rop:ROP_60060 7%2C8-didemethyl-8-hydroxy-5- deazariboflavine synthase~SMART: Elongator protein 3/MiaB/NifB gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1148 Tpau_1149 Tpau_1149 Tpau_1149 1180299 1181051 + hypothetical protein KEGG: rop:ROP_60070 hypothetical protein gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1149 Tpau_1150 Tpau_1150 Tpau_1150 1181053 1182270 - Na+ dependent nucleoside transporter domain protein PFAM: Na+ dependent nucleoside transporter domain protein%3B nucleoside recognition domain protein%3B Na+ dependent nucleoside transporter~KEGG: bpu:BPUM_3586 CNT family concentrative nucleoside transporter gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1150 Tpau_1151 Tpau_1151 Tpau_1151 1182379 1182705 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: rer:RER_41810 7Fe ferredoxin gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1151 Tpau_1152 Tpau_1152 Tpau_1152 1182719 1183825 + succinyldiaminopimelate transaminase KEGG: rop:ROP_60090 succinyldiaminopimelate aminotransferase~TIGRFAM: succinyldiaminopimelate transaminase~PFAM: aminotransferase class I and II gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1152 Tpau_1153 Tpau_1153 Tpau_1153 1183822 1184715 + protein of unknown function DUF692 PFAM: protein of unknown function DUF692%3B Xylose isomerase domain protein TIM barrel~KEGG: mab:MAB_3022c hypothetical protein gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1153 Tpau_1154 Tpau_1154 Tpau_1154 1184729 1184986 + hypothetical protein KEGG: YFW1%3B one of eight Candida genes similar to N. crassa NCU02877.1%2C and to several plant orfs with glycine-rich C termini%3B designated YFW for conserved residues gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1154 Tpau_1155 Tpau_1155 Tpau_1155 1185018 1185311 + conserved hypothetical protein KEGG: hypothetical protein LOC100029683 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1155 Tpau_1156 Tpau_1156 Tpau_1156 1185298 1185729 + conserved hypothetical protein KEGG: mab:MAB_3021c hypothetical protein gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1156 Tpau_1157 Tpau_1157 Tpau_1157 1185827 1186273 + hypothetical protein gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1157 Tpau_1158 Tpau_1158 Tpau_1158 1186280 1187230 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylateN-su ccinyltransferase TIGRFAM:2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase~KEGG: rer:RER_41720 tetrahydrodipicolinate N- succinyltransferase gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1158 Tpau_1159 Tpau_1159 Tpau_1159 1187326 1188678 + magnesium transporter TIGRFAM: magnesium transporter~PFAM: MgtE intracellular region%3B CBS domain containing protein%3B MgtE integral membrane region~KEGG: mgi:Mflv_4176 magnesium transporter~SMART: CBS domain containing protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1159 Tpau_1160 Tpau_1160 Tpau_1160 1188692 1189801 + succinyl-diaminopimelate desuccinylase KEGG: rop:ROP_60240 succinyl-diaminopimelate desuccinylase~TIGRFAM: succinyl-diaminopimelate desuccinylase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1160 Tpau_1161 Tpau_1161 Tpau_1161 1189812 1190606 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: rer:RER_41700 hypothetical protein gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1161 Tpau_1162 Tpau_1162 Tpau_1162 1190603 1191151 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: rop:ROP_60260 hypothetical protein gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1162 Tpau_1163 Tpau_1163 Tpau_1163 1191162 1192973 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rha:RHA1_ro05967 acyl-CoA synthetase gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1163 Tpau_1164 Tpau_1164 Tpau_1164 1192990 1193853 + dihydropteroate synthase TIGRFAM: dihydropteroate synthase~KEGG: rha:RHA1_ro05968 dihydropteroate synthase~PFAM: dihydropteroate synthase DHPS gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1164 Tpau_1165 Tpau_1165 Tpau_1165 1193850 1194758 + glycosyl transferase family 2 PFAM: glycosyl transferase family 2~KEGG: rop:ROP_60290 putative glucosyl-3- phosphoglycerate synthase gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1165 Tpau_1166 Tpau_1166 Tpau_1166 1194755 1195240 + hypothetical protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1166 Tpau_1167 Tpau_1167 Tpau_1167 1195244 1195951 - transcriptional regulator%2C MerR family KEGG: sgr:SGR_431 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1167 Tpau_1168 Tpau_1168 Tpau_1168 1196025 1197197 + Erythromycin esterase PFAM: Erythromycin esterase~KEGG: dra:DR_A0345 hypothetical protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1168 Tpau_1169 Tpau_1169 Tpau_1169 1197347 1198354 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase~KEGG: bja:bll5833 putative dihydroflavonol-4- reductase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1169 Tpau_1170 Tpau_1170 Tpau_1170 1198408 1198962 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: msm:MSMEG_0227 transcriptional regulator%2C TetR family protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1170 Tpau_1171 Tpau_1171 Tpau_1171 1199055 1199375 + DivIVA domain protein TIGRFAM: DivIVA domain~KEGG: rer:RER_41650 hypothetical protein gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1171 Tpau_1172 Tpau_1172 Tpau_1172 1199485 1199652 + conserved hypothetical protein KEGG: rop:ROP_60320 hypothetical protein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1172 Tpau_1173 Tpau_1173 Tpau_1173 1199745 1200602 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: sen:SACE_1994 rRNA guanine-N1- methyltransferase gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1173 Tpau_1174 Tpau_1174 Tpau_1174 1200603 1201766 - glycogen synthase KEGG: rha:RHA1_ro05974 glycosyltransferase~TIGRFAM: glycogen synthase~PFAM: glycosyl transferase group 1 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1174 Tpau_1175 Tpau_1175 Tpau_1175 1201888 1203171 + glucose-1-phosphate adenylyltransferase KEGG: rer:RER_41600 glucose-1-phosphate adenylyltransferase~TIGRFAM: glucose-1-phosphate adenylyltransferase~PFAM: Nucleotidyl transferase%3B transferase hexapeptide repeat containing protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1175 Tpau_1176 Tpau_1176 Tpau_1176 1203391 1204983 + Elongator protein 3/MiaB/NifB SMART: Elongator protein 3/MiaB/NifB~KEGG: mtp:Mthe_0201 radical SAM domain-containing protein gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1176 Tpau_1177 Tpau_1177 Tpau_1177 1204986 1205600 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: nfa:nfa3800 putative translocator gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1177 Tpau_1178 Tpau_1178 Tpau_1178 1205740 1205925 - hypothetical protein KEGG: ebd:ECBD_4206 conserved hypothetical protein%2C hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1178 Tpau_1179 Tpau_1179 Tpau_1179 1206101 1206622 - hypothetical protein KEGG: hne:HNE_2946 hypothetical protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1179 Tpau_1180 Tpau_1180 Tpau_1180 1206735 1207574 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B Male sterility domain~KEGG: mkm:Mkms_2663 short-chain dehydrogenase/reductase SDR gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1180 Tpau_1181 Tpau_1181 Tpau_1181 1207575 1208132 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: rer:RER_21510 hypothetical protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1181 Tpau_1182 Tpau_1182 Tpau_1182 1208141 1209493 - F420 biosynthesis protein FbiB%2C C-terminal domain protein KEGG: mav:MAV_4225 F420-0--gamma-glutamyl ligase~TIGRFAM: F420 biosynthesis protein FbiB%2C C-terminal domain%3B F420-dependent oxidoreductase~PFAM: protein of unknown function DUF129%3B nitroreductase gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1182 Tpau_1183 Tpau_1183 Tpau_1183 1209490 1210497 - LPPG domain protein containing protein KEGG: rop:ROP_63740 LPPG--FO 2-phopspho-L-lactate transferase~TIGRFAM: LPPG domain protein containing protein~PFAM: protein of unknown function UPF0052 and CofD gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1183 Tpau_1184 Tpau_1184 Tpau_1184 1210748 1211074 + transcription factor WhiB PFAM: transcription factor WhiB~KEGG: rer:RER_21540 WhiB family regulatory protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1184 Tpau_1185 Tpau_1185 Tpau_1185 1211097 1211588 - conserved hypothetical protein KEGG: nfa:nfa46230 hypothetical protein gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1185 Tpau_1186 Tpau_1186 Tpau_1186 1211647 1212189 + conserved hypothetical protein KEGG: mgi:Mflv_4727 hypothetical protein gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1186 Tpau_1187 Tpau_1187 Tpau_1187 1212299 1213669 + Phosphomannomutase KEGG: rha:RHA1_ro06316 phosphomannomutase/phosphoglucomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase %3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1187 Tpau_1188 Tpau_1188 Tpau_1188 1213719 1214819 + conserved hypothetical protein KEGG: rop:ROP_63790 hypothetical protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1188 Tpau_1189 Tpau_1189 Tpau_1189 1214819 1216042 + mannose-6-phosphate isomerase%2C class I TIGRFAM: mannose-6-phosphate isomerase%2C class I~KEGG: mgi:Mflv_4724 mannose-6-phosphate isomerase%2C class I~PFAM: mannose-6-phosphate isomerase type I gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1189 Tpau_1190 Tpau_1190 Tpau_1190 1216062 1216265 - hypothetical protein gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1190 Tpau_1191 Tpau_1191 Tpau_1191 1216456 1217955 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: mjl:Mjls_1368 amino acid permease-associated region gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1191 Tpau_1192 Tpau_1192 Tpau_1192 1218185 1219651 + adenosylhomocysteinase TIGRFAM: adenosylhomocysteinase~KEGG: mab:MAB_3595c S-adenosyl-L-homocysteine hydrolase~PFAM: S-adenosyl-L-homocysteine hydrolase%3B S- adenosyl-L-homocysteine hydrolase%2C NAD binding%3B D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1192 Tpau_1193 Tpau_1193 Tpau_1193 1219652 1220365 - conserved hypothetical protein KEGG: bcv:Bcav_1798 hypothetical protein gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1193 Tpau_1194 Tpau_1194 Tpau_1194 1220352 1220879 - protein of unknown function DUF1003 PFAM: protein of unknown function DUF1003~KEGG: mjl:Mjls_4002 hypothetical protein gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1194 Tpau_1195 Tpau_1195 Tpau_1195 1220876 1222159 - MgtE intracellular region PFAM: MgtE intracellular region%3B CBS domain containing protein~KEGG: rer:RER_41500 hypothetical protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1195 Tpau_1196 Tpau_1196 Tpau_1196 1222212 1222724 + conserved hypothetical protein KEGG: rer:RER_41480 hypothetical protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1196 Tpau_1197 Tpau_1197 Tpau_1197 1222875 1223873 + conserved hypothetical protein KEGG: nfa:nfa26160 hypothetical protein gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1197 Tpau_1198 Tpau_1198 Tpau_1198 1223883 1224662 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_37140 TetR family transcriptional regulator gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1198 Tpau_1199 Tpau_1199 Tpau_1199 1224809 1226260 + extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: msm:MSMEG_5061 extracellular solute-binding protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1199 Tpau_1200 Tpau_1200 Tpau_1200 1226257 1227189 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rer:RER_41460 ABC transporter permease protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1200 Tpau_1201 Tpau_1201 Tpau_1201 1227200 1228033 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rop:ROP_60500 putative ABC transporter permease protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1201 Tpau_1202 Tpau_1202 Tpau_1202 1228062 1229243 + ABC transporter related protein KEGG: rer:RER_41440 ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1202 Tpau_1203 Tpau_1203 Tpau_1203 1229251 1229931 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: rer:RER_41390 hypothetical protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1203 Tpau_1204 Tpau_1204 Tpau_1204 1229921 1230793 + conserved hypothetical protein KEGG: rop:ROP_60540 hypothetical protein gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1204 Tpau_1205 Tpau_1205 Tpau_1205 1230821 1231420 + conserved hypothetical protein KEGG: rop:ROP_60560 hypothetical protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1205 Tpau_1206 Tpau_1206 Tpau_1206 1231417 1232217 - hypothetical protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1206 Tpau_1207 Tpau_1207 Tpau_1207 1232260 1233336 - magnesium and cobalt transport protein CorA KEGG: rop:ROP_60570 putative magnesium transporter CorA~TIGRFAM: magnesium and cobalt transport protein CorA~PFAM: Mg2 transporter protein CorA family protein gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1207 Tpau_1208 Tpau_1208 Tpau_1208 1233427 1234326 + Substrate-binding region of ABC-type glycine betaine transport system PFAM: Substrate-binding region of ABC-type glycine betaine transport system~KEGG: rop:ROP_60650 putative ABC transporter substrate-binding protein gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1208 Tpau_1209 Tpau_1209 Tpau_1209 1234390 1235217 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rer:RER_41250 alcohol dehydrogenase gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1209 Tpau_1210 Tpau_1210 Tpau_1210 1235338 1235988 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_41230 TetR family transcriptional regulator gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1210 Tpau_1211 Tpau_1211 Tpau_1211 1236070 1239789 - 2-oxoglutarate dehydrogenase%2C E1 subunit KEGG: rha:RHA1_ro06012 alpha-ketoglutarate decarboxylase~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E1 subunit~PFAM: Transketolase central region%3B dehydrogenase E1 component%3B catalytic domain of components of various dehydrogenase complexes gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1211 Tpau_1212 Tpau_1212 Tpau_1212 1239904 1240659 - conserved hypothetical protein KEGG: nfa:nfa46910 hypothetical protein gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1212 Tpau_1213 Tpau_1213 Tpau_1213 1240784 1241236 + thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: bpr:GBP346_A1693 thioesterase family protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1213 Tpau_1214 Tpau_1214 Tpau_1214 1241247 1241870 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: aau:AAur_3257 putative amino-acid acetyltransferase gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1214 Tpau_1215 Tpau_1215 Tpau_1215 1241873 1244749 + SNF2-related protein KEGG: nfa:nfa10310 putative helicase~PFAM: SNF2-related protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1215 Tpau_1216 Tpau_1216 Tpau_1216 1244749 1245546 + zinc finger SWIM domain protein PFAM: zinc finger SWIM domain protein~KEGG: rha:RHA1_ro01558 hypothetical protein gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1216 Tpau_1217 Tpau_1217 Tpau_1217 1245660 1246799 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: mjl:Mjls_3950 metallophosphoesterase gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1217 Tpau_1218 Tpau_1218 Tpau_1218 1246796 1249429 + SMC domain protein PFAM: SMC domain protein~KEGG: mav:MAV_1428 hypothetical protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1218 Tpau_1219 Tpau_1219 Tpau_1219 1249436 1249897 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: rha:RHA1_ro05887 hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1219 Tpau_1220 Tpau_1220 Tpau_1220 1249916 1251049 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: ami:Amir_3856 major facilitator superfamily MFS_1 gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1220 Tpau_1221 Tpau_1221 Tpau_1221 1251046 1251543 - hypothetical protein KEGG: mab:MAB_3709c hypothetical protein gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1221 Tpau_1222 Tpau_1222 Tpau_1222 1251557 1254016 + ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC KEGG: nfa:nfa17840 putative transporter ATPase~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1222 Tpau_1223 Tpau_1223 Tpau_1223 1254020 1254421 + hypothetical protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1223 Tpau_1224 Tpau_1224 Tpau_1224 1254473 1254997 + hypothetical protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1224 Tpau_1225 Tpau_1225 Tpau_1225 1255002 1255907 - UspA domain protein PFAM: UspA domain protein~KEGG: mkm:Mkms_1198 UspA domain-containing protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1225 Tpau_1226 Tpau_1226 Tpau_1226 1256007 1256468 + hypothetical protein KEGG: mno:Mnod_5602 hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1226 Tpau_1227 Tpau_1227 Tpau_1227 1256809 1258413 - conserved hypothetical protein KEGG: mab:MAB_2268c hypothetical protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1227 Tpau_1228 Tpau_1228 Tpau_1228 1258818 1260470 + arginyl-tRNA synthetase TIGRFAM: arginyl-tRNA synthetase~KEGG: rer:RER_39240 arginyl-tRNA synthetase gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1228 Tpau_1229 Tpau_1229 Tpau_1229 1260483 1261844 + diaminopimelate decarboxylase TIGRFAM: diaminopimelate decarboxylase~KEGG: rer:RER_39230 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2 gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1229 Tpau_1230 Tpau_1230 Tpau_1230 1261844 1263160 + Homoserine dehydrogenase KEGG: mab:MAB_1435 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B amino acid-binding ACT domain protein%3B homoserine dehydrogenase NAD-binding gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1230 Tpau_1231 Tpau_1231 Tpau_1231 1263153 1264253 + threonine synthase KEGG: rer:RER_39210 threonine synthase~TIGRFAM: threonine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1231 Tpau_1232 Tpau_1232 Tpau_1232 1264261 1265253 + homoserine kinase TIGRFAM: homoserine kinase~KEGG: rer:RER_39200 homoserine kinase~PFAM: GHMP kinase%3B GHMP kinase domain protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1232 Tpau_1233 Tpau_1233 Tpau_1233 1265592 1267553 + transcription termination factor Rho TIGRFAM: transcription termination factor Rho~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B Rho termination factor domain protein%3B Rho termination factor RNA-binding~KEGG: rer:RER_39190 transcription termination factor Rho~SMART: AAA ATPase%3B Cold shock protein gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1233 Tpau_1234 Tpau_1234 Tpau_1234 1267617 1269236 - serine/threonine protein kinase KEGG: mjl:Mjls_4697 protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1234 Tpau_1235 Tpau_1235 Tpau_1235 1269457 1269687 + ribosomal protein L31 KEGG: rop:ROP_11940 50S ribosomal protein L31~TIGRFAM: ribosomal protein L31~PFAM: ribosomal protein L31 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1235 Tpau_1236 Tpau_1236 Tpau_1236 1269775 1270863 + peptide chain release factor 1 KEGG: nfa:nfa10540 peptide chain release factor 1~TIGRFAM: peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B PCRF domain protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1236 Tpau_1237 Tpau_1237 Tpau_1237 1270869 1271711 + modification methylase%2C HemK family KEGG: stp:Strop_3642 HemK family modification methylase~TIGRFAM: modification methylase%2C HemK family~PFAM: methyltransferase small gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1237 Tpau_1238 Tpau_1238 Tpau_1238 1271708 1272358 + Sua5/YciO/YrdC/YwlC family protein KEGG: nfa:nfa10560 hypothetical protein~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein~PFAM: SUA5/yciO/yrdC domain gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1238 Tpau_1239 Tpau_1239 Tpau_1239 1272429 1273280 - hypothetical protein KEGG: nfa:nfa6070 hypothetical protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1239 Tpau_1240 Tpau_1240 Tpau_1240 1273351 1274313 - Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11200 putative Mce family protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1240 Tpau_1241 Tpau_1241 Tpau_1241 1274310 1275365 - Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11190 putative Mce family protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1241 Tpau_1242 Tpau_1242 Tpau_1242 1275365 1277488 - Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11180 putative Mce family protein gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1242 Tpau_1243 Tpau_1243 Tpau_1243 1277473 1278507 - virulence factor Mce family protein KEGG: nfa:nfa11160 putative Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1243 Tpau_1244 Tpau_1244 Tpau_1244 1278514 1279668 - Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11150 putative Mce family protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1244 Tpau_1245 Tpau_1245 Tpau_1245 1279672 1280535 - protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: nfa:nfa11140 putative YrbE family protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1245 Tpau_1246 Tpau_1246 Tpau_1246 1280584 1281441 - protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: nfa:nfa11130 putative YrbE family protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1246 Tpau_1247 Tpau_1247 Tpau_1247 1281711 1282928 + Glycosyl transferase%2C family 4%2C conserved region PFAM: Glycosyl transferase%2C family 4%2C conserved region~KEGG: rer:RER_39130 UDP-N-acetylglucosamine-- undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1247 Tpau_1248 Tpau_1248 Tpau_1248 1283133 1283546 + ATP synthase I PFAM: ATP synthase I~KEGG: mmi:MMAR_4094 hypothetical protein gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1248 Tpau_1249 Tpau_1249 Tpau_1249 1283543 1284295 + ATP synthase F0%2C A subunit KEGG: mgi:Mflv_2312 F0F1 ATP synthase subunit A~TIGRFAM: ATP synthase F0%2C A subunit~PFAM: H+transporting two-sector ATPase A subunit gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1249 Tpau_1250 Tpau_1250 Tpau_1250 1284373 1284618 + ATP synthase F0%2C C subunit KEGG: mjl:Mjls_3867 F0F1 ATP synthase subunit C~TIGRFAM: ATP synthase F0%2C C subunit~PFAM: H+transporting two-sector ATPase C subunit gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1250 Tpau_1251 Tpau_1251 Tpau_1251 1284648 1285160 + H+transporting two-sector ATPase B/B' subunit PFAM: H+transporting two-sector ATPase B/B' subunit~KEGG: mab:MAB_1449 F0F1 ATP synthase subunit B gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1251 Tpau_1252 Tpau_1252 Tpau_1252 1285161 1286507 + ATP synthase F1%2C delta subunit KEGG: mab:MAB_1450 F0F1 ATP synthase subunit delta~TIGRFAM: ATP synthase F1%2C delta subunit~PFAM: H+transporting two-sector ATPase B/B' subunit%3B H+transporting two-sector ATPase delta (OSCP) subunit gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1252 Tpau_1253 Tpau_1253 Tpau_1253 1286555 1288189 + ATP synthase F1%2C alpha subunit TIGRFAM: ATP synthase F1%2C alpha subunit~KEGG: rha:RHA1_ro01474 F0F1 ATP synthase subunit alpha~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B HerA-ATP synthase%2C barrel domain%3B H+transporting two-sector ATPase alpha/beta subunit domain protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1253 Tpau_1254 Tpau_1254 Tpau_1254 1288182 1289102 + ATP synthase F1%2C gamma subunit KEGG: rha:RHA1_ro01473 F0F1 ATP synthase subunit gamma~TIGRFAM: ATP synthase F1%2C gamma subunit~PFAM: H+transporting two-sector ATPase gamma subunit gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1254 Tpau_1255 Tpau_1255 Tpau_1255 1289121 1290566 + ATP synthase F1%2C beta subunit SMART: AAA ATPase~TIGRFAM: ATP synthase F1%2C beta subunit~KEGG: rer:RER_39050 ATP synthase beta chain~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1255 Tpau_1256 Tpau_1256 Tpau_1256 1290574 1290957 + ATP synthase F1%2C epsilon subunit KEGG: rop:ROP_11810 ATP synthase epsilon chain~TIGRFAM: ATP synthase F1%2C epsilon subunit~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit- like gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1256 Tpau_1257 Tpau_1257 Tpau_1257 1291051 1291485 + Protein of unknown function DUF2550 PFAM: Protein of unknown function DUF2550~KEGG: mpa:MAP2449c hypothetical protein gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1257 Tpau_1258 Tpau_1258 Tpau_1258 1291489 1292085 - ATP/cobalamin adenosyltransferase KEGG: mpa:MAP2448 hypothetical protein~TIGRFAM: ATP/cobalamin adenosyltransferase~PFAM: cobalamin adenosyltransferase gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1258 Tpau_1259 Tpau_1259 Tpau_1259 1292149 1293402 + UDP-N-acetylglucosamine1-carboxyvinyltransferase KEGG: rha:RHA1_ro01468 UDP-N-acetylglucosamine 1- carboxyvinyltransferase~TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1259 Tpau_1260 Tpau_1260 Tpau_1260 1295648 1295782 + hypothetical protein gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1260 Tpau_1261 Tpau_1261 Tpau_1261 1299493 1300200 + protein of unknown function DUF91 PFAM: protein of unknown function DUF91~KEGG: rha:RHA1_ro01459 hypothetical protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1261 Tpau_1262 Tpau_1262 Tpau_1262 1300206 1300493 + hypothetical protein KEGG: sen:SACE_6244 hypothetical protein gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1262 Tpau_1263 Tpau_1263 Tpau_1263 1300474 1301520 - myosin KEGG: rha:RHA1_ro01457 myosin gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1263 Tpau_1264 Tpau_1264 Tpau_1264 1301620 1302123 - methylmalonyl-CoA epimerase KEGG: rer:RER_38950 methylmalonyl-CoA epimerase~TIGRFAM: methylmalonyl-CoA epimerase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1264 Tpau_1265 Tpau_1265 Tpau_1265 1302188 1303390 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: mav:MAV_1544 acetyl-CoA acetyltransferase~PFAM: Thiolase gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1265 Tpau_1266 Tpau_1266 Tpau_1266 1303399 1303749 + conserved hypothetical protein KEGG: rer:RER_38930 hypothetical protein gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1266 Tpau_1267 Tpau_1267 Tpau_1267 1303820 1306765 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rha:RHA1_ro00948 acyl-CoA synthetase gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1267 Tpau_1268 Tpau_1268 Tpau_1268 1306854 1307825 + Thioredoxin domain protein PFAM: Thioredoxin domain~KEGG: rer:RER_38920 hypothetical protein gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1268 Tpau_1269 Tpau_1269 Tpau_1269 1307906 1309144 + extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: ami:Amir_4241 extracellular solute-binding protein family 1 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1269 Tpau_1270 Tpau_1270 Tpau_1270 1309144 1310070 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: sma:SAV_2093 sugar ABC transporter permeases protein gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1270 Tpau_1271 Tpau_1271 Tpau_1271 1310067 1310891 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: sma:SAV_2094 sugar ABC transporter permeases protein gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1271 Tpau_1272 Tpau_1272 Tpau_1272 1311018 1311974 + Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: mab:MAB_0484 putative hydrolase/esterase/lipase gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1272 Tpau_1273 Tpau_1273 Tpau_1273 1312094 1313512 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: nfa:nfa47430 acyl-CoA synthetase gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1273 Tpau_1274 Tpau_1274 Tpau_1274 1313537 1314031 + hypothetical protein KEGG: smt:Smal_2155 hypothetical protein gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1274 Tpau_1275 Tpau_1275 Tpau_1275 1314032 1314907 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: mab:MAB_2680c LysR family transcriptional regulator gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1275 Tpau_1276 Tpau_1276 Tpau_1276 1314992 1316388 + pseudogene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1276 Tpau_1277 Tpau_1277 Tpau_1277 1316385 1317113 - beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: rha:RHA1_ro08118 beta-lactamase gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1277 Tpau_1278 Tpau_1278 Tpau_1278 1317113 1319317 - 1%2C4-alpha-glucan branching enzyme TIGRFAM: 1%2C4-alpha-glucan branching enzyme~PFAM: alpha amylase all-beta%3B glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~KEGG: rer:RER_38900 1%2C4-alpha-glucan branching enzyme~SMART: alpha amylase catalytic sub domain gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1278 Tpau_1279 Tpau_1279 Tpau_1279 1319317 1321317 - alpha amylase catalytic region KEGG: rha:RHA1_ro01448 alpha amylase~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1279 Tpau_1280 Tpau_1280 Tpau_1280 1321381 1323414 - helicase c2 SMART: helicase c2%3B DEAD-like helicase~KEGG: rer:RER_38870 ATP-dependent DNA helicase DinG gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1280 Tpau_1281 Tpau_1281 Tpau_1281 1323489 1324361 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: fal:FRAAL2999 LysR family transcriptional regulator gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1281 Tpau_1282 Tpau_1282 Tpau_1282 1324432 1324791 + conserved hypothetical protein KEGG: rsa:RSal33209_1522 hypothetical protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1282 Tpau_1283 Tpau_1283 Tpau_1283 1324813 1325502 + TetR family transcriptional regulator KEGG: mab:MAB_3300c TetR family transcriptional regulator gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1283 Tpau_1284 Tpau_1284 Tpau_1284 1325544 1326740 + conserved hypothetical protein KEGG: rha:RHA1_ro03056 hypothetical protein gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1284 Tpau_1285 Tpau_1285 Tpau_1285 1326768 1327340 - isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: nfa:nfa10840 putative nicotinamidase gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1285 Tpau_1286 Tpau_1286 Tpau_1286 1327337 1328704 - nicotinate phosphoribosyltransferase KEGG: rha:RHA1_ro01442 nicotinate phosphoribosyltransferase~TIGRFAM: nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1286 Tpau_1287 Tpau_1287 Tpau_1287 1328723 1329052 + ATP-dependent Clp protease adaptor protein ClpS PFAM: ATP-dependent Clp protease adaptor protein ClpS~KEGG: rop:ROP_11500 putative ATP-dependent Clp protease adaptor protein ClpS gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1287 Tpau_1288 Tpau_1288 Tpau_1288 1329053 1329661 + Domain of unknown function DUF2017 PFAM: Domain of unknown function DUF2017~KEGG: mab:MAB_1476 hypothetical protein gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1288 Tpau_1289 Tpau_1289 Tpau_1289 1329690 1330115 + Mov34/MPN/PAD-1 family protein KEGG: sen:SACE_1204 Mov34/MPN/PAD-1~PFAM: Mov34/MPN/PAD-1 family protein~SMART: Mov34/MPN/PAD-1 family protein gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1289 Tpau_1290 Tpau_1290 Tpau_1290 1330115 1330387 + thiamineS protein PFAM: thiamineS protein~KEGG: mmi:MMAR_4063 putative antigen Cfp10A gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1290 Tpau_1291 Tpau_1291 Tpau_1291 1330395 1331381 + cysteine synthase KEGG: rha:RHA1_ro01436 cysteine synthase~TIGRFAM: cysteine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1291 Tpau_1292 Tpau_1292 Tpau_1292 1331412 1332068 + Rhomboid family protein PFAM: Rhomboid family protein~KEGG: mab:MAB_1481 hypothetical protein gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1292 Tpau_1293 Tpau_1293 Tpau_1293 1332088 1332856 + pseudogene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1293 Tpau_1294 Tpau_1294 Tpau_1294 1332890 1333672 + ribonuclease PH TIGRFAM: ribonuclease PH~KEGG: rer:RER_38790 ribonuclease PH~PFAM: 3' exoribonuclease%3B Exoribonuclease%2C phosphorolytic domain 2 gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1294 Tpau_1295 Tpau_1295 Tpau_1295 1333669 1334292 + non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family KEGG: rop:ROP_11400 nucleoside-triphosphatase~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family~PFAM: Ham1 family protein gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1295 Tpau_1296 Tpau_1296 Tpau_1296 1334320 1335564 + cell envelope-related transcriptional attenuator KEGG: mbt:JTY_3548 hypothetical protein~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: cell envelope-related transcriptional attenuator gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1296 Tpau_1297 Tpau_1297 Tpau_1297 1335676 1336941 + peptidase S8 and S53 subtilisin kexin sedolisin PFAM: peptidase S8 and S53 subtilisin kexin sedolisin~KEGG: rop:ROP_55190 putative subtilisin family peptidase gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1297 Tpau_1298 Tpau_1298 Tpau_1298 1336938 1337168 + conserved hypothetical protein KEGG: mno:Mnod_8802 hypothetical protein gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1298 Tpau_1299 Tpau_1299 Tpau_1299 1337237 1338844 - hypothetical protein KEGG: bld:BLi00801 hypothetical protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1299 Tpau_1300 Tpau_1300 Tpau_1300 1339603 1340043 + conserved hypothetical protein KEGG: mav:MAV_1560 hypothetical protein gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1300 Tpau_1301 Tpau_1301 Tpau_1301 1340040 1340417 + conserved hypothetical protein KEGG: rer:RER_38770 hypothetical protein gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1301 Tpau_1302 Tpau_1302 Tpau_1302 1340479 1342170 - Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: rer:RER_56610 hypothetical protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1302 Tpau_1303 Tpau_1303 Tpau_1303 1342372 1343925 - Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: rer:RER_56610 hypothetical protein gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1303 Tpau_1304 Tpau_1304 Tpau_1304 1344141 1345916 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rer:RER_40980 long-chain fatty-acid--CoA ligase gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1304 Tpau_1305 Tpau_1305 Tpau_1305 1346024 1347832 + DEAD/DEAH box helicase domain protein KEGG: rha:RHA1_ro06038 cold-shock DEAD-box protein~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B DbpA RNA-binding domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1305 Tpau_1306 Tpau_1306 Tpau_1306 1347969 1352201 + DNA helicase KEGG: rha:RHA1_ro01677 DNA helicase gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1306 Tpau_1307 Tpau_1307 Tpau_1307 1352203 1353678 - transcriptional regulator%2C PucR family PFAM: purine catabolism PurC domain protein~KEGG: rop:ROP_56700 putative CdaR family transcriptional regulator gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1307 Tpau_1308 Tpau_1308 Tpau_1308 1353806 1355158 + 4-aminobutyrate aminotransferase KEGG: rop:ROP_56630 4-aminobutyrate aminotransferase~TIGRFAM: 4-aminobutyrate aminotransferase~PFAM: aminotransferase class-III gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1308 Tpau_1309 Tpau_1309 Tpau_1309 1355155 1356606 + Succinate-semialdehyde dehydrogenase KEGG: rha:RHA1_ro05596 succinate-semialdehyde dehydrogenase (NAD(P)+)~PFAM: Aldehyde Dehydrogenase gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1309 Tpau_1310 Tpau_1310 Tpau_1310 1356610 1357434 - Shikimate dehydrogenase substrate binding domain protein PFAM: Shikimate dehydrogenase substrate binding domain protein%3B Shikimate/quinate 5-dehydrogenase~KEGG: rha:RHA1_ro01564 shikimate 5-dehydrogenase gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1310 Tpau_1311 Tpau_1311 Tpau_1311 1357483 1358064 - conserved hypothetical protein KEGG: mab:MAB_0011c hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1311 Tpau_1312 Tpau_1312 Tpau_1312 1358064 1358444 - hypothetical protein gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1312 Tpau_1313 Tpau_1313 Tpau_1313 1358565 1359890 + hypothetical protein KEGG: mab:MAB_1280c hypothetical protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1313 Tpau_1314 Tpau_1314 Tpau_1314 1359865 1360686 - Silent information regulator protein Sir2 PFAM: Silent information regulator protein Sir2~KEGG: mbt:JTY_1185 NAD-dependent deacetylase gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1314 Tpau_1315 Tpau_1315 Tpau_1315 1361005 1370313 + MaoC domain protein dehydratase PFAM: MaoC domain protein dehydratase%3B Beta- ketoacyl synthase %3B Acyl transferase%3B domain of unknown function DUF1729~KEGG: nfa:nfa12570 putative fatty acid synthase gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1315 Tpau_1316 Tpau_1316 Tpau_1316 1370331 1370714 + 4'-phosphopantetheinyl transferase PFAM: 4'-phosphopantetheinyl transferase~KEGG: mjl:Mjls_3660 4'-phosphopantetheinyl transferase gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1316 Tpau_1317 Tpau_1317 Tpau_1317 1370761 1376196 + Carbamoyl-phosphate synthase L chain ATP- binding protein PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B carboxyl transferase%3B biotin/lipoyl attachment domain- containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein~KEGG: tfu:Tfu_1530 acetyl/propionyl-CoA carboxylase alpha subunit gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1317 Tpau_1318 Tpau_1318 Tpau_1318 1376370 1376705 - histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: bcv:Bcav_2569 histidine triad (HIT) protein gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1318 Tpau_1319 Tpau_1319 Tpau_1319 1376978 1377415 - conserved hypothetical protein KEGG: rop:ROP_03480 hypothetical protein gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1319 Tpau_1320 Tpau_1320 Tpau_1320 1377455 1378219 + transcriptional regulator%2C MerR family KEGG: nfa:nfa22770 putative transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1320 Tpau_1321 Tpau_1321 Tpau_1321 1378221 1379366 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rha:RHA1_ro02754 long-chain-acyl-CoA dehydrogenase gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1321 Tpau_1322 Tpau_1322 Tpau_1322 1379378 1379851 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein~KEGG: mmi:MMAR_3956 bacterioferritin comigratory protein Bcp gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1322 Tpau_1323 Tpau_1323 Tpau_1323 1379870 1380244 + conserved hypothetical protein KEGG: mjl:Mjls_2449 hypothetical protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1323 Tpau_1324 Tpau_1324 Tpau_1324 1380246 1381112 - transcriptional regulator%2C LysR family PFAM: regulatory protein LysR%3B LysR substrate- binding~KEGG: nfa:nfa42770 putative transcriptional regulator gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1324 Tpau_1325 Tpau_1325 Tpau_1325 1381259 1382587 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: nfa:nfa42760 putative NADH dehydrogenase gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1325 Tpau_1326 Tpau_1326 Tpau_1326 1382528 1383748 - ErfK/YbiS/YcfS/YnhG family protein PFAM: ErfK/YbiS/YcfS/YnhG family protein~KEGG: mab:MAB_1530 lipoprotein LppS gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1326 Tpau_1327 Tpau_1327 Tpau_1327 1383858 1384100 + hypothetical protein KEGG: pzu:PHZ_c2602 hypothetical protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1327 Tpau_1328 Tpau_1328 Tpau_1328 1384286 1384681 + hypothetical protein KEGG: rpe:RPE_3858 binding-protein-dependent transport systems inner membrane component gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1328 Tpau_1329 Tpau_1329 Tpau_1329 1385164 1386333 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: svi:Svir_17470 acyl-CoA dehydrogenase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1329 Tpau_1330 Tpau_1330 Tpau_1330 1386405 1386929 + membrane-flanked domain protein PFAM: membrane-flanked domain~KEGG: mtb:TBMG_02755 hypothetical protein gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1330 Tpau_1331 Tpau_1331 Tpau_1331 1386916 1388451 + membrane-flanked domain protein PFAM: membrane-flanked domain~KEGG: msm:MSMEG_0865 membrane flanked domain- containing protein gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1331 Tpau_1332 Tpau_1332 Tpau_1332 1388423 1388899 - conserved hypothetical protein KEGG: saq:Sare_1321 hypothetical protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1332 Tpau_1333 Tpau_1333 Tpau_1333 1388938 1389819 - hypothetical protein KEGG: rha:RHA1_ro05481 protease gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1333 Tpau_1334 Tpau_1334 Tpau_1334 1390008 1391507 + sodium/proline symporter KEGG: krh:KRH_05020 sodium/proline symporter~TIGRFAM: sodium/proline symporter%3B SSS sodium solute transporter superfamily~PFAM: Na+/solute symporter gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1334 Tpau_1335 Tpau_1335 Tpau_1335 1391550 1392251 - putative integral membrane protein KEGG: ach:Achl_2887 putative integral membrane protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1335 Tpau_1336 Tpau_1336 Tpau_1336 1392248 1393162 - ABC transporter related protein PFAM: ABC transporter related~KEGG: ach:Achl_2888 ABC transporter related gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1336 Tpau_1337 Tpau_1337 Tpau_1337 1393159 1393554 - transcriptional regulator%2C GntR family KEGG: ach:Achl_2889 transcriptional regulator%2C GntR family~PFAM: regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1337 Tpau_1338 Tpau_1338 Tpau_1338 1393701 1393919 + hypothetical protein gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1338 Tpau_1339 Tpau_1339 Tpau_1339 1394159 1394755 - Exonuclease RNase T and DNA polymerase III KEGG: rha:RHA1_ro01418 oligoribonuclease~PFAM: Exonuclease RNase T and DNA polymerase III~SMART: Exonuclease gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1339 Tpau_1340 Tpau_1340 Tpau_1340 1394790 1396337 + protein of unknown function DUF853 NPT hydrolase putative PFAM: protein of unknown function DUF853 NPT hydrolase putative~KEGG: nfa:nfa12880 hypothetical protein gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1340 Tpau_1341 Tpau_1341 Tpau_1341 1396412 1397218 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rha:RHA1_ro01416 short chain dehydrogenase gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1341 Tpau_1342 Tpau_1342 Tpau_1342 1397399 1397836 + DoxX family protein PFAM: DoxX family protein~KEGG: sco:SCO7224 integral membrane protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1342 Tpau_1343 Tpau_1343 Tpau_1343 1397833 1398231 + PPOX class putative F420-dependent enzyme KEGG: cai:Caci_7774 pyridoxamine 5'-phosphate oxidase-related FMN-binding~TIGRFAM: PPOX class probable F420-dependent enzyme~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1343 Tpau_1344 Tpau_1344 Tpau_1344 1398235 1400265 - NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase%3B FAD- dependent pyridine nucleotide-disulphide oxidoreductase%3B HI0933 family protein~KEGG: nfa:nfa12900 putative 2%2C4-dienoyl-CoA reductase gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1344 Tpau_1345 Tpau_1345 Tpau_1345 1400275 1400847 - transcriptional regulator%2C PadR-like family PFAM: Transcriptional regulator PadR-like%3B transcriptional regulator PadR family protein~KEGG: nfa:nfa12910 putative transcriptional regulator gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1345 Tpau_1346 Tpau_1346 Tpau_1346 1400886 1402151 - conserved hypothetical protein KEGG: mkm:Mkms_0813 hypothetical protein gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1346 Tpau_1347 Tpau_1347 Tpau_1347 1402338 1402865 - hypothetical protein KEGG: stp:Strop_3941 hypothetical protein gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1347 Tpau_1348 Tpau_1348 Tpau_1348 1403018 1404763 - PA14 domain protein SMART: PA14 domain protein~KEGG: ote:Oter_0060 hypothetical protein gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1348 Tpau_1349 Tpau_1349 Tpau_1349 1405049 1406485 + citrate/H+ symporter%2C CitMHS family KEGG: rer:RER_13860 citrate transporter~TIGRFAM: citrate/H+ symporter%2C CitMHS family~PFAM: Citrate transporter gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1349 Tpau_1350 Tpau_1350 Tpau_1350 1406514 1408145 + signal transduction histidine kinase regulating citrate/malate metabolism KEGG: cmi:CMM_2877 putative two-component system%2C sensor kinase~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1350 Tpau_1351 Tpau_1351 Tpau_1351 1408135 1408797 + response regulator receiver and unknown domain protein KEGG: cgt:cgR_0089 hypothetical protein~PFAM: response regulator receiver~SMART: response regulator receiver gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1351 Tpau_1352 Tpau_1352 Tpau_1352 1408870 1410036 + conserved hypothetical protein KEGG: msm:MSMEG_2381 hypothetical protein gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1352 Tpau_1353 Tpau_1353 Tpau_1353 1410107 1411996 + peptidase S9 prolyl oligopeptidase active site domain protein PFAM: peptidase S9 prolyl oligopeptidase active site domain protein%3B peptidase S15%3B dienelactone hydrolase~KEGG: mva:Mvan_5922 peptidase S9 prolyl oligopeptidase gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1353 Tpau_1354 Tpau_1354 Tpau_1354 1411987 1412751 - transcriptional regulator%2C MerR family KEGG: sen:SACE_4775 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1354 Tpau_1355 Tpau_1355 Tpau_1355 1412753 1413631 - ABC transporter integral membrane protein KEGG: sma:SAV_5345 ABC transporter integral membrane protein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1355 Tpau_1356 Tpau_1356 Tpau_1356 1413628 1416072 - ABC transporter related protein KEGG: sco:SCO2723 ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B X-Pro dipeptidyl- peptidase domain protein%3B peptidase S15~SMART: AAA ATPase gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1356 Tpau_1357 Tpau_1357 Tpau_1357 1416275 1417456 + oxidoreductase domain protein PFAM: oxidoreductase domain protein%3B Oxidoreductase domain~KEGG: sco:SCO6988 oxidoreductase gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1357 Tpau_1358 Tpau_1358 Tpau_1358 1417581 1418594 + putative ABC transporter substrate-binding protein KEGG: rop:ROP_05200 putative ABC transporter substrate-binding protein gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1358 Tpau_1359 Tpau_1359 Tpau_1359 1418591 1419649 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: rop:ROP_10620 putative ABC transporter permease protein gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1359 Tpau_1360 Tpau_1360 Tpau_1360 1419655 1420464 + ABC transporter related protein KEGG: rop:ROP_05220 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1360 Tpau_1361 Tpau_1361 Tpau_1361 1420499 1421500 + Inositol 2-dehydrogenase KEGG: cgt:cgR_2947 hypothetical protein~PFAM: oxidoreductase domain protein%3B Oxidoreductase domain gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1361 Tpau_1362 Tpau_1362 Tpau_1362 1421567 1422451 - Myo-inosose-2 dehydratase KEGG: rha:RHA1_ro01363 sugar phosphate isomerase/epimerase IolE~PFAM: Xylose isomerase domain protein TIM barrel gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1362 Tpau_1363 Tpau_1363 Tpau_1363 1422646 1423668 + pseudogene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1363 Tpau_1364 Tpau_1364 Tpau_1364 1423672 1424412 - transcriptional regulator%2C GntR family KEGG: rer:RER_20220 GntR family transcriptional regulator~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1364 Tpau_1365 Tpau_1365 Tpau_1365 1424692 1425657 + PfkB domain protein PFAM: PfkB domain protein~KEGG: cmi:CMM_0774 putative sugar kinase gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1365 Tpau_1366 Tpau_1366 Tpau_1366 1425650 1426600 + putative aldolase KEGG: cmi:CMM_0775 putative aldolase gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1366 Tpau_1367 Tpau_1367 Tpau_1367 1426597 1428132 + methylmalonate-semialdehyde dehydrogenase KEGG: cmi:CMM_0776 putative NAD-dependent aldehyde dehydrogenase~TIGRFAM: methylmalonate-semialdehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1367 Tpau_1368 Tpau_1368 Tpau_1368 1428156 1429079 + Myo-inositol catabolism IolB domain protein PFAM: Myo-inositol catabolism IolB domain protein~KEGG: cgb:cg0201 hypothetical protein gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1368 Tpau_1369 Tpau_1369 Tpau_1369 1429076 1431010 + thiamine pyrophosphate protein central region PFAM: thiamine pyrophosphate protein central region%3B thiamine pyrophosphate protein domain protein TPP- binding%3B thiamine pyrophosphate protein TPP binding domain protein~KEGG: cmi:CMM_0778 putative acetolactate synthase gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1369 Tpau_1370 Tpau_1370 Tpau_1370 1431014 1432201 - Acyl-CoA dehydrogenase type 2 domain protein PFAM: Acyl-CoA dehydrogenase type 2 domain%3B acyl- CoA dehydrogenase domain protein~KEGG: sen:SACE_4060 acyl-CoA dehydrogenase%2C type 2- like gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1370 Tpau_1371 Tpau_1371 Tpau_1371 1432198 1433307 - Alkanesulfonate monooxygenase KEGG: nfa:nfa54330 putative monooxygenase~PFAM: Luciferase-like%2C subgroup gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1371 Tpau_1372 Tpau_1372 Tpau_1372 1433332 1434516 - Alkanesulfonate monooxygenase KEGG: rer:RER_53410 alkanesulfonate monooxygenase gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1372 Tpau_1373 Tpau_1373 Tpau_1373 1434681 1437998 + thioester reductase domain protein KEGG: mab:MAB_2962 fatty-acid-CoA ligase FadD~TIGRFAM: thioester reductase domain protein~PFAM: Male sterility domain%3B AMP-dependent synthetase and ligase%3B phosphopantetheine-binding gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1373 Tpau_1374 Tpau_1374 Tpau_1374 1438143 1438670 + single-strand binding protein/Primosomal replication protein n PFAM: single-strand binding protein/Primosomal replication protein n~KEGG: mul:MUL_3758 hypothetical protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1374 Tpau_1375 Tpau_1375 Tpau_1375 1438675 1439886 - sodium/hydrogen exchanger PFAM: sodium/hydrogen exchanger~KEGG: msm:MSMEG_5825 Na+/H+ antiporter gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1375 Tpau_1376 Tpau_1376 Tpau_1376 1440042 1441454 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mjl:Mjls_0254 major facilitator transporter gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1376 Tpau_1377 Tpau_1377 Tpau_1377 1441481 1442617 + Uroporphyrinogen III synthase HEM4 PFAM: Uroporphyrinogen III synthase HEM4%3B transcriptional regulator domain protein~KEGG: nfa:nfa45590 bifunctional uroporphyrinogen- III synthetase/response regulator domain protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1377 Tpau_1378 Tpau_1378 Tpau_1378 1442641 1443357 + cobalamin (vitamin B12) biosynthesis CbiX protein PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein~KEGG: mkm:Mkms_0272 cobalamin (vitamin B12) biosynthesis CbiX protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1378 Tpau_1379 Tpau_1379 Tpau_1379 1443429 1443839 - nitrite reductase (NAD(P)H)%2C small subunit TIGRFAM: nitrite reductase [NAD(P)H]%2C small subunit~KEGG: mva:Mvan_0298 nitrite reductase (NAD(P)H)%2C small subunit gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1379 Tpau_1380 Tpau_1380 Tpau_1380 1443841 1446390 - nitrite reductase (NAD(P)H)%2C large subunit KEGG: mgi:Mflv_0387 nitrite reductase (NAD(P)H)%2C large subunit~TIGRFAM: nitrite reductase [NAD(P)H]%2C large subunit~PFAM: nitrite and sulphite reductase 4Fe-4S region%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B BFD domain protein [2Fe-2S]-binding domain protein%3B nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1380 Tpau_1381 Tpau_1381 Tpau_1381 1446529 1450227 - molybdopterin oxidoreductase PFAM: molybdopterin oxidoreductase%3B flavodoxin/nitric oxide synthase%3B FAD-binding domain protein%3B molybdopterin oxidoreductase Fe4S4 region%3B oxidoreductase FAD/NAD(P)-binding domain protein%3B molydopterin dinucleotide-binding region~KEGG: ppw:PputW619_1259 molybdopterin oxidoreductase gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1381 Tpau_1382 Tpau_1382 Tpau_1382 1450390 1451364 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: svi:Svir_23320 Zn-dependent oxidoreductase%2C NADPH:quinone reductase gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1382 Tpau_1383 Tpau_1383 Tpau_1383 1451418 1451675 + hypothetical protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1383 Tpau_1384 Tpau_1384 Tpau_1384 1451781 1453454 + ABC transporter related protein KEGG: rer:RER_38330 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1384 Tpau_1385 Tpau_1385 Tpau_1385 1453651 1457865 + NAD-glutamate dehydrogenase PFAM: NAD-glutamate dehydrogenase~KEGG: nfa:nfa13060 putative NAD-dependent glutamate dehydrogenase gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1385 Tpau_1386 Tpau_1386 Tpau_1386 1457875 1458351 + conserved hypothetical protein KEGG: rop:ROP_11060 hypothetical protein gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1386 Tpau_1387 Tpau_1387 Tpau_1387 1458348 1458989 + conserved hypothetical protein KEGG: rha:RHA1_ro01391 hypothetical protein gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1387 Tpau_1388 Tpau_1388 Tpau_1388 1458953 1459618 - transcriptional regulator%2C MerR family SMART: regulatory protein MerR~KEGG: svi:Svir_05650 predicted transcriptional regulator gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1388 Tpau_1389 Tpau_1389 Tpau_1389 1459707 1460192 + conserved hypothetical protein KEGG: sma:SAV_2688 hypothetical protein gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1389 Tpau_1390 Tpau_1390 Tpau_1390 1460209 1461810 - alpha amylase catalytic region KEGG: rha:RHA1_ro01389 alpha-glucosidase~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1390 Tpau_1391 Tpau_1391 Tpau_1391 1461873 1462280 - globin PFAM: globin~KEGG: mva:Mvan_4066 globin gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1391 Tpau_1392 Tpau_1392 Tpau_1392 1462360 1463811 + diguanylate cyclase with PAS/PAC sensor TIGRFAM: diguanylate cyclase%3B PAS sensor protein~PFAM: GGDEF domain containing protein%3B PAS fold-3 domain protein%3B PAS fold domain protein%3B PAS fold-4 domain protein~KEGG: tmz:Tmz1t_1382 diguanylate cyclase with PAS/PAC sensor~SMART: GGDEF domain containing protein%3B PAC repeat- containing protein%3B PAS domain containing protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1392 Tpau_1393 Tpau_1393 Tpau_1393 1463955 1464545 + HNH endonuclease KEGG: msm:MSMEG_4694 HNH endonuclease family protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1393 Tpau_1394 Tpau_1394 Tpau_1394 1464610 1464867 + conserved hypothetical protein KEGG: mtc:MT2544 hypothetical protein gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1394 Tpau_1395 Tpau_1395 Tpau_1395 1464854 1465336 + conserved hypothetical protein KEGG: rer:RER_38230 hypothetical protein gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1395 Tpau_1396 Tpau_1396 Tpau_1396 1465398 1465724 - SecC motif-containing protein KEGG: msm:MSMEG_1921 SecC motif-containing protein gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1396 Tpau_1397 Tpau_1397 Tpau_1397 1465827 1466294 + protein of unknown function DUF1486 PFAM: protein of unknown function DUF1486~KEGG: rer:RER_54570 hypothetical protein gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1397 Tpau_1398 Tpau_1398 Tpau_1398 1466354 1468924 - aminopeptidase N KEGG: nfa:nfa13180 putative aminopeptidase~TIGRFAM: aminopeptidase N~PFAM: Peptidase M1 membrane alanine aminopeptidase gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1398 Tpau_1399 Tpau_1399 Tpau_1399 1469083 1469706 + DSBA oxidoreductase PFAM: DSBA oxidoreductase~KEGG: mab:MAB_1572 hypothetical protein gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1399 Tpau_1400 Tpau_1400 Tpau_1400 1469753 1471078 - peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: rer:RER_38200 hypothetical protein gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1400 Tpau_1401 Tpau_1401 Tpau_1401 1471141 1471623 + ribose 5-phosphate isomerase KEGG: nfa:nfa13270 ribose-5-phosphate isomerase B~TIGRFAM: ribose 5-phosphate isomerase%3B sugar- phosphate isomerase%2C RpiB/LacA/LacB family~PFAM: Ribose/galactose isomerase gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1401 Tpau_1402 Tpau_1402 Tpau_1402 1471630 1472433 + DNA-(apurinic or apyrimidinic site) lyase KEGG: rop:ROP_10910 putative DNA glycosylase~PFAM: DNA glycosylase/AP lyase%2C H2TH DNA-binding%3B Formamidopyrimidine-DNA glycosylase catalytic domain protein gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1402 Tpau_1403 Tpau_1403 Tpau_1403 1472542 1473513 + conserved hypothetical protein KEGG: rop:ROP_59440 hypothetical protein gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1403 Tpau_1404 Tpau_1404 Tpau_1404 1473531 1473806 + conserved hypothetical protein KEGG: cjk:jk0504 hypothetical protein gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1404 Tpau_1405 Tpau_1405 Tpau_1405 1473878 1474210 + hypothetical protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1405 Tpau_1406 Tpau_1406 Tpau_1406 1474251 1474943 + hypothetical protein KEGG: mab:MAB_0672c hypothetical protein gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1406 Tpau_1407 Tpau_1407 Tpau_1407 1474948 1475616 - hypothetical protein KEGG: mab:MAB_2112 hypothetical protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1407 Tpau_1408 Tpau_1408 Tpau_1408 1475613 1476203 - HhH-GPD family protein KEGG: nca:Noca_2964 HhH-GPD family protein~TIGRFAM: HhH-GPD family protein~PFAM: HhH-GPD family protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1408 Tpau_1409 Tpau_1409 Tpau_1409 1476306 1477097 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: mab:MAB_4431 enoyl-CoA hydratase/isomerase family protein gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1409 Tpau_1410 Tpau_1410 Tpau_1410 1477100 1477768 - two component transcriptional regulator%2C LuxR family KEGG: rop:ROP_53160 putative NarL family two- component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1410 Tpau_1411 Tpau_1411 Tpau_1411 1477765 1478925 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: rha:RHA1_ro05271 sensor kinase%2C two-component system gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1411 Tpau_1412 Tpau_1412 Tpau_1412 1479099 1479251 + hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1412 Tpau_1413 Tpau_1413 Tpau_1413 1479313 1480785 + cytochrome P450 PFAM: cytochrome P450~KEGG: mjl:Mjls_0781 cytochrome P450 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1413 Tpau_1414 Tpau_1414 Tpau_1414 1480790 1482487 - amine oxidase PFAM: amine oxidase%3B FAD dependent oxidoreductase~KEGG: rha:RHA1_ro03531 tryptophan 2-monooxygenase gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1414 Tpau_1415 Tpau_1415 Tpau_1415 1482484 1483299 - Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: rer:RER_05780 hydrolase gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1415 Tpau_1416 Tpau_1416 Tpau_1416 1483296 1484756 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: rha:RHA1_ro03529 amino acid transporter gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1416 Tpau_1417 Tpau_1417 Tpau_1417 1484753 1485730 - agmatinase KEGG: rer:RER_05760 agmatinase~TIGRFAM: agmatinase~PFAM: Arginase/agmatinase/formiminoglutamase gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1417 Tpau_1418 Tpau_1418 Tpau_1418 1485828 1486439 + transcriptional regulator%2C XRE family KEGG: rop:ROP_33220 putative Xre family DNA-binding protein~PFAM: helix-turn-helix domain protein%3B Cupin 2 conserved barrel domain protein~SMART: helix-turn-helix domain protein gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1418 Tpau_1419 Tpau_1419 Tpau_1419 1486426 1487226 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rop:ROP_16190 putative enoyl-CoA hydratase gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1419 Tpau_1420 Tpau_1420 Tpau_1420 1487236 1488009 - AraC protein arabinose-binding/dimerization KEGG: sco:SCO7497 transcriptional regulator~PFAM: AraC protein arabinose-binding/dimerisation~SMART: Helix-turn-helix%2C AraC domain gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1420 Tpau_1421 Tpau_1421 Tpau_1421 1488093 1488875 + protein of unknown function DUF81 PFAM: protein of unknown function DUF81~KEGG: sco:SCO7496 integral membrane protein gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1421 Tpau_1422 Tpau_1422 Tpau_1422 1489530 1490237 + hypothetical protein KEGG: mab:MAB_1179c hypothetical protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1422 Tpau_1423 Tpau_1423 Tpau_1423 1490234 1491763 - integrase family protein PFAM: integrase family protein~KEGG: rop:ROP_54360 phage integrase family protein gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1423 Tpau_1424 Tpau_1424 Tpau_1424 1491765 1492412 - Resolvase domain protein PFAM: Resolvase domain~KEGG: mmi:MMAR_4443 site-specific recombinase gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1424 Tpau_1425 Tpau_1425 Tpau_1425 1492735 1493595 - hypothetical protein KEGG: mgi:Mflv_1982 hypothetical protein gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1425 Tpau_1426 Tpau_1426 Tpau_1426 1493728 1496154 - Bifunctional DNA primase/polymerase PFAM: Bifunctional DNA primase/polymerase~KEGG: bln:Blon_1128 pancreatic ribonuclease gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1426 Tpau_1427 Tpau_1427 Tpau_1427 1496151 1496573 - hypothetical protein gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1427 Tpau_1428 Tpau_1428 Tpau_1428 1496770 1497615 - hypothetical protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1428 Tpau_1429 Tpau_1429 Tpau_1429 1497692 1498591 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1429 Tpau_1430 Tpau_1430 Tpau_1430 1498591 1498884 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1430 Tpau_1431 Tpau_1431 Tpau_1431 1498935 1499147 - hypothetical protein gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1431 Tpau_1432 Tpau_1432 Tpau_1432 1499669 1501036 + conserved hypothetical protein KEGG: rop:ROP_54300 hypothetical protein gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1432 Tpau_1433 Tpau_1433 Tpau_1433 1501137 1501436 + hypothetical protein gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1433 Tpau_1434 Tpau_1434 Tpau_1434 1501429 1501893 + hypothetical protein KEGG: hypothetical protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1434 Tpau_1435 Tpau_1435 Tpau_1435 1501901 1502224 - hypothetical protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1435 Tpau_1436 Tpau_1436 Tpau_1436 1502360 1502611 + transcriptional regulator%2C XRE family KEGG: fra:Francci3_0889 XRE family transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1436 Tpau_1437 Tpau_1437 Tpau_1437 1502629 1503057 - hypothetical protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1437 Tpau_1438 Tpau_1438 Tpau_1438 1503105 1504004 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1438 Tpau_1439 Tpau_1439 Tpau_1439 1504004 1504297 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1439 Tpau_1440 Tpau_1440 Tpau_1440 1504348 1504758 - hypothetical protein gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1440 Tpau_1441 Tpau_1441 Tpau_1441 1505303 1505725 + DoxX family protein PFAM: DoxX family protein~KEGG: rha:RHA1_ro05666 hypothetical protein gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1441 Tpau_1442 Tpau_1442 Tpau_1442 1505807 1507126 + conserved hypothetical protein KEGG: mab:MAB_0392c hypothetical protein gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1442 Tpau_1443 Tpau_1443 Tpau_1443 1507177 1508589 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: rer:RER_53470 hypothetical protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1443 Tpau_1444 Tpau_1444 Tpau_1444 1508434 1509816 - acyltransferase 3 KEGG: kra:Krad_1450 acyltransferase 3 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1444 Tpau_1445 Tpau_1445 Tpau_1445 1509960 1510472 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: cmi:CMM_1961 putative acetyltransferase gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1445 Tpau_1446 Tpau_1446 Tpau_1446 1510502 1512488 + pseudogene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1446 Tpau_1447 Tpau_1447 Tpau_1447 1512472 1513221 - PEP phosphonomutase and related enzymes KEGG: mab:MAB_4410c PEP phosphonomutase and related enzymes gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1447 Tpau_1448 Tpau_1448 Tpau_1448 1513218 1513910 - peptidase S51 dipeptidase E PFAM: peptidase S51 dipeptidase E~KEGG: dra:DR_1070 peptidase E%2C putative gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1448 Tpau_1449 Tpau_1449 Tpau_1449 1513946 1514896 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: svi:Svir_28050 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1449 Tpau_1450 Tpau_1450 Tpau_1450 1514893 1515936 + transport system permease protein PFAM: transport system permease protein~KEGG: tfu:Tfu_0657 ABC-type transporter%2C permease component gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1450 Tpau_1451 Tpau_1451 Tpau_1451 1515933 1516709 + ABC transporter related protein KEGG: cai:Caci_8853 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1451 Tpau_1452 Tpau_1452 Tpau_1452 1516764 1517291 + putative lipoprotein KEGG: mbt:JTY_0353 putative lipoprotein gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1452 Tpau_1453 Tpau_1453 Tpau_1453 1517288 1517803 - transcriptional regulator%2C XRE family KEGG: mab:MAB_0769c putative transcriptional regulator~PFAM: helix-turn-helix domain protein%3B Cupin 2 conserved barrel domain protein~SMART: helix-turn-helix domain protein gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1453 Tpau_1454 Tpau_1454 Tpau_1454 1517826 1519037 + benzoate transporter KEGG: ach:Achl_1661 benzoate transporter~TIGRFAM: benzoate transporter~PFAM: Benzoate membrane transport protein gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1454 Tpau_1455 Tpau_1455 Tpau_1455 1519151 1519573 - hypothetical protein KEGG: nfa:nfa36270 hypothetical protein gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1455 Tpau_1456 Tpau_1456 Tpau_1456 1519790 1521151 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: rer:RER_53420 MFS transporter gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1456 Tpau_1457 Tpau_1457 Tpau_1457 1521215 1521958 - protein of unknown function DUF1275 PFAM: protein of unknown function DUF1275~KEGG: mab:MAB_3210c hypothetical protein gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1457 Tpau_1458 Tpau_1458 Tpau_1458 1522067 1522585 - Diamine N-acetyltransferase KEGG: nfa:nfa27360 putative acetyltransferase~PFAM: GCN5-related N-acetyltransferase gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1458 Tpau_1459 Tpau_1459 Tpau_1459 1522595 1522978 - protein of unknown function DUF1304 PFAM: protein of unknown function DUF1304~KEGG: rha:RHA1_ro02814 hypothetical protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1459 Tpau_1460 Tpau_1460 Tpau_1460 1523149 1524534 + trigger factor KEGG: nfa:nfa13320 trigger factor~TIGRFAM: trigger factor~PFAM: trigger factor domain%3B trigger factor domain protein%3B peptidylprolyl isomerase FKBP-type gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1460 Tpau_1461 Tpau_1461 Tpau_1461 1524670 1525263 + Endopeptidase Clp KEGG: rop:ROP_10880 ATP-dependent Clp protease proteolytic subunit~PFAM: peptidase S14 ClpP gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1461 Tpau_1462 Tpau_1462 Tpau_1462 1525281 1525949 + Endopeptidase Clp KEGG: rer:RER_38140 ATP-dependent Clp protease proteolytic subunit ClpP~PFAM: peptidase S14 ClpP gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1462 Tpau_1463 Tpau_1463 Tpau_1463 1526136 1527413 + ATP-dependent Clp protease%2C ATP-binding subunit ClpX TIGRFAM: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase AAA-2 domain protein%3B zinc finger C4 domain protein%3B AAA ATPase central domain protein%3B Clp ATPase-like~KEGG: mab:MAB_1583 ATP-dependent protease ATP- binding subunit ClpX~SMART: AAA ATPase gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1463 Tpau_1464 Tpau_1464 Tpau_1464 1527438 1528223 - aminoglycoside phosphotransferase PFAM: aminoglycoside phosphotransferase~KEGG: mmi:MMAR_5380 phosphotransferase gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1464 Tpau_1465 Tpau_1465 Tpau_1465 1528220 1529854 - ABC transporter related protein KEGG: sma:SAV_1878 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1465 Tpau_1466 Tpau_1466 Tpau_1466 1529937 1531334 - conserved hypothetical protein KEGG: mab:MAB_2776 hypothetical protein gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1466 Tpau_1467 Tpau_1467 Tpau_1467 1531907 1532983 + protein of unknown function zinc metallopeptidase putative PFAM: protein of unknown function zinc metallopeptidase putative~KEGG: mab:MAB_2775c hypothetical protein gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1467 Tpau_1468 Tpau_1468 Tpau_1468 1533032 1535713 + valyl-tRNA synthetase KEGG: mab:MAB_1603 valyl-tRNA synthetase~TIGRFAM: valyl-tRNA synthetase gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1468 Tpau_1469 Tpau_1469 Tpau_1469 1535710 1537125 + FolC bifunctional protein TIGRFAM: FolC bifunctional protein~KEGG: nfa:nfa13490 putative folylpolyglutamate synthetase~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1469 Tpau_1470 Tpau_1470 Tpau_1470 1537122 1537523 + conserved hypothetical protein KEGG: rer:RER_37980 hypothetical protein gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1470 Tpau_1471 Tpau_1471 Tpau_1471 1537642 1538052 + Nucleoside-diphosphate kinase PFAM: nucleoside diphosphate kinase~KEGG: msm:MSMEG_4627 nucleoside diphosphate kinase~SMART: nucleoside diphosphate kinase gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1471 Tpau_1472 Tpau_1472 Tpau_1472 1538394 1541516 + ribonuclease%2C Rne/Rng family TIGRFAM: ribonuclease%2C Rne/Rng family~KEGG: rop:ROP_10360 putative ribonuclease~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B RNA binding S1 domain protein%3B translation initiation factor IF-2 domain protein gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1472 Tpau_1473 Tpau_1473 Tpau_1473 1541667 1541978 + ribosomal protein L21 KEGG: mab:MAB_1610 50S ribosomal protein L21~TIGRFAM: ribosomal protein L21~PFAM: ribosomal protein L21 gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1473 Tpau_1474 Tpau_1474 Tpau_1474 1542026 1542289 + ribosomal protein L27 KEGG: rha:RHA1_ro01312 50S ribosomal protein L27~TIGRFAM: ribosomal protein L27~PFAM: ribosomal protein L27 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1474 Tpau_1475 Tpau_1475 Tpau_1475 1542430 1543890 + GTP-binding protein Obg/CgtA KEGG: nfa:nfa13550 GTPase ObgE~TIGRFAM: GTP-binding protein Obg/CgtA%3B Obg family GTPase CgtA~PFAM: GTP1/OBG sub domain protein%3B GTP-binding protein HSR1-related%3B GTP1/OBG domain protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1475 Tpau_1476 Tpau_1476 Tpau_1476 1543887 1545020 + glutamate 5-kinase SMART: PUA domain containing protein~TIGRFAM: glutamate 5-kinase~KEGG: rer:RER_37910 glutamate 5-kinase~PFAM: aspartate/glutamate/uridylate kinase%3B PUA domain containing protein gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1476 Tpau_1477 Tpau_1477 Tpau_1477 1545110 1546117 + conserved hypothetical protein KEGG: mab:MAB_0929 hypothetical protein gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1477 Tpau_1478 Tpau_1478 Tpau_1478 1546237 1546857 + Endopeptidase Clp KEGG: nfa:nfa11710 putative Clp protease proteolytic subunit~PFAM: peptidase S14 ClpP gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1478 Tpau_1479 Tpau_1479 Tpau_1479 1546854 1547441 + Endopeptidase Clp KEGG: cai:Caci_2038 endopeptidase Clp~PFAM: peptidase S14 ClpP gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1479 Tpau_1480 Tpau_1480 Tpau_1480 1547443 1547793 - transcriptional regulator%2C XRE family KEGG: cai:Caci_2037 transcriptional regulator%2C XRE family~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1480 Tpau_1481 Tpau_1481 Tpau_1481 1547856 1550069 - glycoside hydrolase family 3 domain protein PFAM: glycoside hydrolase family 3 domain protein~KEGG: fre:Franean1_3155 glycoside hydrolase family 3 protein gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1481 Tpau_1482 Tpau_1482 Tpau_1482 1550080 1550904 - Silent information regulator protein Sir2 PFAM: Silent information regulator protein Sir2~KEGG: rer:RER_37900 NAD-dependent deacetylase gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1482 Tpau_1483 Tpau_1483 Tpau_1483 1551017 1552387 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: ckp:ckrop_1232 permease of the major facilitator superfamily gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1483 Tpau_1484 Tpau_1484 Tpau_1484 1552460 1552849 - pseudogene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1484 Tpau_1485 Tpau_1485 Tpau_1485 1552881 1553780 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1485 Tpau_1486 Tpau_1486 Tpau_1486 1553780 1554073 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1486 Tpau_1487 Tpau_1487 Tpau_1487 1554143 1554490 + pseudogene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1487 Tpau_1488 Tpau_1488 Tpau_1488 1554521 1555327 + acyl-ACP thioesterase PFAM: acyl-ACP thioesterase~KEGG: mtb:TBMG_01985 hypothetical protein gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1488 Tpau_1489 Tpau_1489 Tpau_1489 1555339 1556745 + ribonuclease II PFAM: ribonuclease II~KEGG: rha:RHA1_ro01172 ribonuclease R gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1489 Tpau_1490 Tpau_1490 Tpau_1490 1556750 1557484 + cutinase PFAM: cutinase~KEGG: msm:MSMEG_1403 cutinase superfamily protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1490 Tpau_1491 Tpau_1491 Tpau_1491 1557489 1558961 - CHAD domain containing protein PFAM: CHAD domain containing protein%3B adenylate cyclase~KEGG: ami:Amir_1092 CHAD domain containing protein gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1491 Tpau_1492 Tpau_1492 Tpau_1492 1558964 1559956 - proline iminopeptidase TIGRFAM: proline iminopeptidase~KEGG: rop:ROP_08970 prolyl aminopeptidase~PFAM: alpha/beta hydrolase fold gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1492 Tpau_1493 Tpau_1493 Tpau_1493 1559956 1560816 - 3-methyl-2-oxobutanoatehydroxymethyltransferase TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~KEGG: rop:ROP_08950 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1493 Tpau_1494 Tpau_1494 Tpau_1494 1560883 1562631 - NAD+ synthetase TIGRFAM: NAD+ synthetase~KEGG: ami:Amir_0908 NAD+ synthetase~PFAM: NAD synthase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1494 Tpau_1495 Tpau_1495 Tpau_1495 1562686 1564264 + pseudogene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1495 Tpau_1496 Tpau_1496 Tpau_1496 1564266 1564847 - peptidylprolyl isomerase FKBP-type PFAM: peptidylprolyl isomerase FKBP-type~KEGG: mva:Mvan_2950 peptidylprolyl isomerase%2C FKBP- type gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1496 Tpau_1497 Tpau_1497 Tpau_1497 1564958 1566298 + glutamine synthetase%2C type I KEGG: rop:ROP_08930 glutamine synthetase I~TIGRFAM: glutamine synthetase%2C type I~PFAM: glutamine synthetase catalytic region%3B glutamine synthetase beta-Grasp gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1497 Tpau_1498 Tpau_1498 Tpau_1498 1566310 1569339 + (Glutamate--ammonia-ligase) adenylyltransferase KEGG: rha:RHA1_ro01166 glutamate--ammonia-ligase adenylyltransferase~PFAM: glutamate-ammonia ligase adenylyltransferase%3B GlnD PII-uridylyltransferase%3B protein of unknown function DUF294 nucleotidyltransferase putative gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1498 Tpau_1499 Tpau_1499 Tpau_1499 1569395 1570333 + Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: nfa:nfa44940 hypothetical protein gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1499 Tpau_1500 Tpau_1500 Tpau_1500 1570337 1570813 - conserved hypothetical protein KEGG: nfa:nfa27990 hypothetical protein gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1500 Tpau_1501 Tpau_1501 Tpau_1501 1570894 1571445 - peptidylprolyl isomerase FKBP-type PFAM: peptidylprolyl isomerase FKBP-type~KEGG: mab:MAB_2559c peptidyl-prolyl cis-trans isomerase gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1501 Tpau_1502 Tpau_1502 Tpau_1502 1571487 1572158 - Methyltransferase type 12 PFAM: Methyltransferase type 12%3B Methyltransferase type 11%3B methyltransferase small~KEGG: kse:Ksed_01410 methylase involved in ubiquinone/menaquinone biosynthesis gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1502 Tpau_1503 Tpau_1503 Tpau_1503 1572415 1573407 + o-pyrocatechuate decarboxylase KEGG: bur:Bcep18194_B3061 amidohydrolase 2~PFAM: amidohydrolase 2 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1503 Tpau_1504 Tpau_1504 Tpau_1504 1573428 1573661 - DNA binding domain protein%2C excisionase family TIGRFAM: DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR~KEGG: stp:Strop_4091 DNA binding domain-containing protein gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1504 Tpau_1505 Tpau_1505 Tpau_1505 1574429 1575268 + MspA family protein PFAM: MspA family protein~KEGG: rop:ROP_39490 putative porin MspA gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1505 Tpau_1506 Tpau_1506 Tpau_1506 1575507 1577096 + Carboxylesterase KEGG: sco:SCO4298 carboxylesterase~PFAM: Carboxylesterase type B gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1506 Tpau_1507 Tpau_1507 Tpau_1507 1577108 1577938 - transcriptional regulator%2C IclR family KEGG: rop:ROP_15450 putative IclR family transcriptional regulator~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1507 Tpau_1508 Tpau_1508 Tpau_1508 1578006 1579031 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES domain protein%3B Alcohol dehydrogenase zinc-binding domain protein~KEGG: msm:MSMEG_4064 zinc-binding alcohol dehydrogenase gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1508 Tpau_1509 Tpau_1509 Tpau_1509 1579062 1579355 + hypothetical protein KEGG: efa:EF1055 tunicamycin resistance protein%2C putative gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1509 Tpau_1510 Tpau_1510 Tpau_1510 1579439 1580872 - glutamine synthetase%2C type I KEGG: mab:MAB_1933c glutamine synthetase%2C type I (GlnA1)~TIGRFAM: glutamine synthetase%2C type I~PFAM: glutamine synthetase catalytic region%3B glutamine synthetase beta-Grasp gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1510 Tpau_1511 Tpau_1511 Tpau_1511 1581063 1581545 + RDD domain containing protein PFAM: RDD domain containing protein~KEGG: rop:ROP_08830 hypothetical membrane protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1511 Tpau_1512 Tpau_1512 Tpau_1512 1581562 1582323 - conserved hypothetical protein KEGG: rop:ROP_08820 hypothetical membrane protein gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1512 Tpau_1513 Tpau_1513 Tpau_1513 1582345 1583370 - lipoic acid synthetase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: lipoic acid synthetase~KEGG: rop:ROP_08810 lipoyl synthase~PFAM: Radical SAM domain protein gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1513 Tpau_1514 Tpau_1514 Tpau_1514 1583468 1584649 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: bmj:BMULJ_05434 major facilitator family transporter gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1514 Tpau_1515 Tpau_1515 Tpau_1515 1584654 1585358 - lipoate-protein ligase B TIGRFAM: lipoate-protein ligase B~KEGG: rha:RHA1_ro01153 lipoyltransferase~PFAM: biotin/lipoate A/B protein ligase gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1515 Tpau_1516 Tpau_1516 Tpau_1516 1585369 1586283 - domain of unknown function DUF1731 PFAM: domain of unknown function DUF1731%3B NAD- dependent epimerase/dehydratase~KEGG: rop:ROP_08790 hypothetical protein gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1516 Tpau_1517 Tpau_1517 Tpau_1517 1586312 1588072 - 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase KEGG: nfa:nfa16900 dihydrolipoamide acetyltransferase~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase~PFAM: catalytic domain of components of various dehydrogenase complexes%3B biotin/lipoyl attachment domain- containing protein%3B E3 binding domain protein gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1517 Tpau_1518 Tpau_1518 Tpau_1518 1588229 1589746 - Leucyl aminopeptidase KEGG: rop:ROP_08760 aminopeptidase A~PFAM: peptidase M17 leucyl aminopeptidase domain protein gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1518 Tpau_1519 Tpau_1519 Tpau_1519 1589791 1590858 + transcriptional regulator%2C AraC family KEGG: bur:Bcep18194_B3011 AraC family transcriptional regulator~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1519 Tpau_1520 Tpau_1520 Tpau_1520 1590942 1592258 + alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: rsa:RSal33209_0021 hypothetical protein gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1520 Tpau_1521 Tpau_1521 Tpau_1521 1592255 1593592 + FAD-linked oxidoreductase KEGG: rsa:RSal33209_0022 FAD/FMN-containing dehydrogenase~TIGRFAM: FAD-linked oxidoreductase~PFAM: D-arabinono-14-lactone oxidase%3B FAD linked oxidase domain protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1521 Tpau_1522 Tpau_1522 Tpau_1522 1593660 1593776 + pseudogene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1522 Tpau_1523 Tpau_1523 Tpau_1523 1593862 1594962 + glycine cleavage system T protein KEGG: nfa:nfa16960 glycine cleavage system aminomethyltransferase T~TIGRFAM: glycine cleavage system T protein~PFAM: glycine cleavage T protein (aminomethyl transferase)%3B Glycine cleavage T-protein barrel gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1523 Tpau_1524 Tpau_1524 Tpau_1524 1595050 1596153 + branched-chain amino acid aminotransferase KEGG: mab:MAB_1950 branched-chain amino acid aminotransferase (IlvE)~TIGRFAM: branched-chain amino acid aminotransferase~PFAM: aminotransferase class IV gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1524 Tpau_1525 Tpau_1525 Tpau_1525 1596165 1597382 - conserved hypothetical protein KEGG: msm:MSMEG_6811 hypothetical protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1525 Tpau_1526 Tpau_1526 Tpau_1526 1597534 1598286 - cobalamin-5-phosphate synthase CobS PFAM: cobalamin-5-phosphate synthase CobS~KEGG: nfa:nfa16990 cobalamin synthase gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1526 Tpau_1527 Tpau_1527 Tpau_1527 1598288 1599967 - nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase KEGG: nfa:nfa17000 nicotinate-nucleotide-- dimethylbenzimidazole phosphoribosyltransferase~TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazolep hosphoribosyltransferase~PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase%3B cobalbumin biosynthesis protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1527 Tpau_1528 Tpau_1528 Tpau_1528 1599971 1600657 - conserved hypothetical protein KEGG: nfa:nfa17040 hypothetical protein gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1528 Tpau_1529 Tpau_1529 Tpau_1529 1600713 1601813 + glycerate kinase TIGRFAM: glycerate kinase~KEGG: mab:MAB_1956 glycerate kinase~PFAM: glycerate kinase gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1529 Tpau_1530 Tpau_1530 Tpau_1530 1601884 1602237 + iron-sulfur cluster assembly accessory protein KEGG: nfa:nfa17050 hypothetical protein~TIGRFAM: iron-sulfur cluster assembly accessory protein~PFAM: HesB/YadR/YfhF-family protein gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1530 Tpau_1531 Tpau_1531 Tpau_1531 1602317 1603306 + PfkB domain protein PFAM: PfkB domain protein~KEGG: rer:RER_36040 adenosine kinase gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1531 Tpau_1532 Tpau_1532 Tpau_1532 1603353 1604009 + channel protein%2C hemolysin III family KEGG: rha:RHA1_ro05855 hemolytic factor~TIGRFAM: channel protein%2C hemolysin III family~PFAM: Hly-III family protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1532 Tpau_1533 Tpau_1533 Tpau_1533 1604006 1604677 + Protein of unknown function DUF2236 PFAM: Protein of unknown function DUF2236~KEGG: rer:RER_20960 hypothetical protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1533 Tpau_1534 Tpau_1534 Tpau_1534 1604729 1605478 + transcriptional regulator%2C MerR family KEGG: cai:Caci_0913 transcriptional regulator%2C MerR family~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1534 Tpau_1535 Tpau_1535 Tpau_1535 1605475 1606122 + hypothetical protein KEGG: sgr:SGR_5218 hypothetical protein gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1535 Tpau_1536 Tpau_1536 Tpau_1536 1606119 1608083 - asparagine synthase (glutamine-hydrolyzing) TIGRFAM: asparagine synthase (glutamine- hydrolyzing)~KEGG: nfa:nfa17070 putative asparagine synthetase~PFAM: asparagine synthase%3B glutamine amidotransferase class-II gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1536 Tpau_1537 Tpau_1537 Tpau_1537 1608316 1609416 + cytochrome c oxidase subunit II PFAM: cytochrome c oxidase subunit II~KEGG: nfa:nfa17080 putative cytochrome c oxidase subunit II gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1537 Tpau_1538 Tpau_1538 Tpau_1538 1609420 1609851 + Cytochrome-c oxidase KEGG: mgi:Mflv_2950 putative integral membrane protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1538 Tpau_1539 Tpau_1539 Tpau_1539 1609952 1610680 + Protein of unknown function DUF2174-like protein PFAM: Protein of unknown function DUF2174-like~KEGG: bid:Bind_2941 hypothetical protein gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1539 Tpau_1540 Tpau_1540 Tpau_1540 1610811 1612184 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1540 Tpau_1541 Tpau_1541 Tpau_1541 1612238 1612433 - pseudogene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1541 Tpau_1542 Tpau_1542 Tpau_1542 1612538 1612924 - hypothetical protein KEGG: bcj:BCAM0069 hypothetical protein gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1542 Tpau_1543 Tpau_1543 Tpau_1543 1612957 1614000 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: dhd:Dhaf_3417 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1543 Tpau_1544 Tpau_1544 Tpau_1544 1613997 1614884 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~KEGG: sus:Acid_5133 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1544 Tpau_1545 Tpau_1545 Tpau_1545 1614884 1615513 - aconitate hydratase domain protein PFAM: aconitate hydratase domain protein~KEGG: syd:Syncc9605_0257 3-isopropylmalate dehydratase%2C small subunit gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1545 Tpau_1546 Tpau_1546 Tpau_1546 1615510 1616976 - aconitate hydratase domain protein PFAM: aconitate hydratase domain protein~KEGG: scl:sce0086 isopropylmalate isomerase large subunit gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1546 Tpau_1547 Tpau_1547 Tpau_1547 1617015 1617824 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: bbt:BBta_2283 putative short-chain dehydrogenase/reductase gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1547 Tpau_1548 Tpau_1548 Tpau_1548 1617997 1618461 + conserved hypothetical protein KEGG: mab:MAB_1173c hypothetical protein gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1548 Tpau_1549 Tpau_1549 Tpau_1549 1618433 1619017 + hypothetical protein KEGG: mab:MAB_1172c hypothetical protein gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1549 Tpau_1550 Tpau_1550 Tpau_1550 1619020 1620201 + conserved hypothetical protein KEGG: mab:MAB_1171c hypothetical protein gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1550 Tpau_1551 Tpau_1551 Tpau_1551 1620306 1621082 + conserved hypothetical protein KEGG: cmi:CMM_2461 hypothetical protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1551 Tpau_1552 Tpau_1552 Tpau_1552 1621312 1621611 + pseudogene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1552 Tpau_1553 Tpau_1553 Tpau_1553 1621631 1622530 + serine/threonine protein kinase KEGG: nfa:nfa24260 putative serine/threonine protein kinase~PFAM: tyrosine protein kinase%3B aminoglycoside phosphotransferase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1553 Tpau_1554 Tpau_1554 Tpau_1554 1622623 1624098 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: mab:MAB_2914 L-asparagine permease 1 (L- asparagine transport) gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1554 Tpau_1555 Tpau_1555 Tpau_1555 1624124 1624516 - Ectoine synthase KEGG: nfa:nfa27180 L-ectoine synthase~PFAM: Ectoine synthase%3B Cupin 2 conserved barrel domain protein gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1555 Tpau_1556 Tpau_1556 Tpau_1556 1624513 1625844 - diaminobutyrate/2-oxoglutarate aminotransferase KEGG: rha:RHA1_ro01306 diaminobutyrate--2- oxoglutarate aminotransferase~TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase%3B 2%2C4-diaminobutyrate 4-transaminase~PFAM: aminotransferase class-III gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1556 Tpau_1557 Tpau_1557 Tpau_1557 1625906 1626436 - L-2%2C4-diaminobutyric acid acetyltransferase TIGRFAM: L-2%2C4-diaminobutyric acid acetyltransferase~KEGG: rop:ROP_10270 L-2%2C4-diaminobutyric acid acetyltransferase~PFAM: GCN5-related N-acetyltransferase gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1557 Tpau_1558 Tpau_1558 Tpau_1558 1626541 1627425 - hydrolase KEGG: sco:SCO4449 hydrolase gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1558 Tpau_1559 Tpau_1559 Tpau_1559 1627422 1628282 - PfkB domain protein PFAM: PfkB domain protein~KEGG: nfa:nfa13700 putative ribokinase gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1559 Tpau_1560 Tpau_1560 Tpau_1560 1628391 1629776 + FMNH2-dependent monooxygenase KEGG: rer:RER_45000 FMNH2-dependent monooxygenase gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1560 Tpau_1561 Tpau_1561 Tpau_1561 1629749 1631374 - Alkaline phosphatase D-related protein PFAM: Alkaline phosphatase D-related~KEGG: msm:MSMEG_5508 alkaline phosphatase gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1561 Tpau_1562 Tpau_1562 Tpau_1562 1631582 1633000 + General substrate transporter PFAM: General substrate transporter%3B major facilitator superfamily MFS_1~KEGG: mab:MAB_2263c major facilitator transporter gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1562 Tpau_1563 Tpau_1563 Tpau_1563 1633025 1633585 + methyltransferase KEGG: rha:RHA1_ro06518 methyltransferase~TIGRFAM: methyltransferase~PFAM: Protein of unknown function methylase putative gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1563 Tpau_1564 Tpau_1564 Tpau_1564 1633582 1634055 + pantetheine-phosphate adenylyltransferase TIGRFAM: pantetheine-phosphate adenylyltransferase%3B cytidyltransferase-related domain protein~KEGG: mgi:Mflv_4196 phosphopantetheine adenylyltransferase~PFAM: cytidylyltransferase gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1564 Tpau_1565 Tpau_1565 Tpau_1565 1634186 1634977 + conserved hypothetical protein KEGG: mva:Mvan_2169 hypothetical protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1565 Tpau_1566 Tpau_1566 Tpau_1566 1635050 1635634 + protein of unknown function DUF177 PFAM: protein of unknown function DUF177~KEGG: nfa:nfa41860 hypothetical protein gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1566 Tpau_1567 Tpau_1567 Tpau_1567 1635631 1636380 + ribonuclease III SMART: ribonuclease III%3B double-stranded RNA binding domain protein~TIGRFAM: ribonuclease III~KEGG: rop:ROP_65740 ribonuclease III~PFAM: ribonuclease III%3B double-stranded RNA binding domain protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1567 Tpau_1568 Tpau_1568 Tpau_1568 1636380 1637240 + formamidopyrimidine-DNA glycosylase TIGRFAM: formamidopyrimidine-DNA glycosylase~KEGG: rop:ROP_65750 formamidopyrimidine-DNA glycosylase/AP lyase~PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein%3B zinc finger Fpg domain protein%3B DNA glycosylase/AP lyase%2C H2TH DNA-binding gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1568 Tpau_1569 Tpau_1569 Tpau_1569 1637409 1637936 - protein of unknown function DUF1648 PFAM: protein of unknown function DUF1648~KEGG: kra:Krad_2624 protein of unknown function DUF1648 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1569 Tpau_1570 Tpau_1570 Tpau_1570 1637979 1638416 + OsmC family protein PFAM: OsmC family protein~KEGG: rha:RHA1_ro06525 hypothetical protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1570 Tpau_1571 Tpau_1571 Tpau_1571 1638417 1638704 + acylphosphatase PFAM: acylphosphatase~KEGG: nfa:nfa41730 putative acylphosphatase gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1571 Tpau_1572 Tpau_1572 Tpau_1572 1638708 1639517 + conserved hypothetical protein KEGG: ami:Amir_0114 hypothetical protein gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1572 Tpau_1573 Tpau_1573 Tpau_1573 1639517 1640722 + glutathionylspermidine synthase PFAM: glutathionylspermidine synthase~KEGG: nfa:nfa41710 hypothetical protein gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1573 Tpau_1574 Tpau_1574 Tpau_1574 1640719 1641168 + protein of unknown function DUF350 PFAM: protein of unknown function DUF350~KEGG: nfa:nfa41700 hypothetical protein gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1574 Tpau_1575 Tpau_1575 Tpau_1575 1641177 1642073 + conserved hypothetical protein KEGG: rop:ROP_58200 hypothetical protein gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1575 Tpau_1576 Tpau_1576 Tpau_1576 1642272 1642508 + phosphopantetheine-binding protein PFAM: phosphopantetheine-binding~KEGG: rer:RER_43060 acyl carrier protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1576 Tpau_1577 Tpau_1577 Tpau_1577 1642505 1643620 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: rha:RHA1_ro05732 hypothetical protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1577 Tpau_1578 Tpau_1578 Tpau_1578 1643617 1645410 + condensation domain protein PFAM: condensation domain protein~KEGG: pde:Pden_2564 enterobactin synthase subunit F gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1578 Tpau_1579 Tpau_1579 Tpau_1579 1645407 1646483 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: mab:MAB_1019c glycosyl transferase gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1579 Tpau_1580 Tpau_1580 Tpau_1580 1646480 1647622 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: mab:MAB_1018c glycosyl transferase gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1580 Tpau_1581 Tpau_1581 Tpau_1581 1647640 1648860 + polysaccharide biosynthesis protein PFAM: polysaccharide biosynthesis protein~KEGG: rha:RHA1_ro05738 MOP superfamily O-antigen transporter gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1581 Tpau_1582 Tpau_1582 Tpau_1582 1648857 1649861 + conserved hypothetical protein KEGG: mab:MAB_1016c hypothetical protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1582 Tpau_1583 Tpau_1583 Tpau_1583 1649845 1651326 + conserved hypothetical protein KEGG: rha:RHA1_ro05736 hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1583 Tpau_1584 Tpau_1584 Tpau_1584 1651326 1652621 + lipopolysaccharide biosynthesis protein PFAM: lipopolysaccharide biosynthesis protein~KEGG: rha:RHA1_ro05735 protein-tyrosine kinase%2C C- terminal gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1584 Tpau_1585 Tpau_1585 Tpau_1585 1652618 1654384 + conserved hypothetical protein KEGG: rer:RER_42890 hypothetical protein gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1585 Tpau_1586 Tpau_1586 Tpau_1586 1654377 1655663 + mannuronan epimerase KEGG: rha:RHA1_ro05734 mannuronan epimerase gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1586 Tpau_1587 Tpau_1587 Tpau_1587 1655746 1659330 + chromosome segregation protein SMC KEGG: rha:RHA1_ro06528 chromosome partition protein~TIGRFAM: chromosome segregation protein SMC~PFAM: SMC domain protein%3B SMCs flexible hinge domain protein gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1587 Tpau_1588 Tpau_1588 Tpau_1588 1659482 1660639 + DNA-cytosine methyltransferase KEGG: bln:Blon_0092 DNA-cytosine methyltransferase~TIGRFAM: DNA-cytosine methyltransferase~PFAM: C-5 cytosine-specific DNA methylase gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1588 Tpau_1589 Tpau_1589 Tpau_1589 1660655 1662751 - hypothetical protein KEGG: lmc:Lm4b_00680 hypothetical protein gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1589 Tpau_1590 Tpau_1590 Tpau_1590 1663010 1663705 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: msm:MSMEG_4300 transcription regulator AmtR gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1590 Tpau_1591 Tpau_1591 Tpau_1591 1663840 1665381 + permease%2C urea carboxylase system KEGG: msm:MSMEG_2184 amino acid permease~TIGRFAM: permease%2C urea carboxylase system~PFAM: amino acid permease-associated region gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1591 Tpau_1592 Tpau_1592 Tpau_1592 1665378 1666229 + urea carboxylase-associated protein 2 KEGG: msm:MSMEG_2185 hypothetical protein~TIGRFAM: urea carboxylase-associated protein 2~PFAM: Domain of unknown function DUF1989 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1592 Tpau_1593 Tpau_1593 Tpau_1593 1666226 1666825 + urea carboxylase-associated protein 1 KEGG: msm:MSMEG_2186 hypothetical protein~TIGRFAM: urea carboxylase-associated protein 1~PFAM: Domain of unknown function DUF1989 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1593 Tpau_1594 Tpau_1594 Tpau_1594 1666822 1668813 + urea amidolyase related protein SMART: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1~TIGRFAM: urea amidolyase related protein~KEGG: msm:MSMEG_2187 UreA amidolyase~PFAM: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1594 Tpau_1595 Tpau_1595 Tpau_1595 1668810 1670474 + allophanate hydrolase KEGG: msm:MSMEG_2189 allophanate hydrolase~TIGRFAM: allophanate hydrolase~PFAM: Amidase gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1595 Tpau_1596 Tpau_1596 Tpau_1596 1670567 1672009 + 6-phosphogluconate dehydrogenase%2C decarboxylating TIGRFAM: 6-phosphogluconate dehydrogenase%2C decarboxylating~KEGG: lxx:Lxx17380 6-phosphogluconate dehydrogenase~PFAM: 6-phosphogluconate dehydrogenase domain protein%3B 6-phosphogluconate dehydrogenase NAD-binding gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1596 Tpau_1597 Tpau_1597 Tpau_1597 1672021 1672593 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: bcv:Bcav_3843 GCN5-related protein N- acetyltransferase gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1597 Tpau_1598 Tpau_1598 Tpau_1598 1672610 1673626 - Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: ami:Amir_3561 luciferase-like monooxygenase gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1598 Tpau_1599 Tpau_1599 Tpau_1599 1673623 1674363 - conserved hypothetical protein KEGG: nca:Noca_2884 hypothetical protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1599 Tpau_1600 Tpau_1600 Tpau_1600 1674360 1675325 - periplasmic binding protein PFAM: periplasmic binding protein~KEGG: pac:PPA0656 iron transport system substrate- binding protein gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1600 Tpau_1601 Tpau_1601 Tpau_1601 1675518 1677008 - ABC transporter related protein KEGG: nfa:nfa53360 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1601 Tpau_1602 Tpau_1602 Tpau_1602 1677005 1677805 - conserved hypothetical protein KEGG: mab:MAB_0844 hypothetical protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1602 Tpau_1603 Tpau_1603 Tpau_1603 1677845 1678636 - conserved hypothetical protein KEGG: mab:MAB_0843 hypothetical protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1603 Tpau_1604 Tpau_1604 Tpau_1604 1678633 1679610 - conserved hypothetical protein KEGG: mab:MAB_0842 hypothetical protein gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1604 Tpau_1605 Tpau_1605 Tpau_1605 1679607 1680203 - conserved hypothetical protein KEGG: mab:MAB_0841 hypothetical protein gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1605 Tpau_1606 Tpau_1606 Tpau_1606 1680364 1681605 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: mab:MAB_1646c hypothetical protein gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1606 Tpau_1607 Tpau_1607 Tpau_1607 1681647 1683086 + signal recognition particle-docking protein FtsY TIGRFAM: signal recognition particle-docking protein FtsY~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle~KEGG: rha:RHA1_ro06529 cell division protein~SMART: AAA ATPase gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1607 Tpau_1608 Tpau_1608 Tpau_1608 1683236 1684564 + ammonium transporter KEGG: mjl:Mjls_1936 ammonium transporter~TIGRFAM: ammonium transporter~PFAM: ammonium transporter gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1608 Tpau_1609 Tpau_1609 Tpau_1609 1684612 1684950 + nitrogen regulatory protein P-II PFAM: nitrogen regulatory protein P-II~KEGG: rop:ROP_65830 nitrogen regulatory protein PII gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1609 Tpau_1610 Tpau_1610 Tpau_1610 1684965 1687418 + UTP-GlnB uridylyltransferase%2C GlnD SMART: metal-dependent phosphohydrolase HD region~TIGRFAM: protein-P-II uridylyltransferase~KEGG: rer:RER_24410 PII uridylyltransferase~PFAM: metal-dependent phosphohydrolase HD sub domain%3B GlnD PII-uridylyltransferase%3B amino acid-binding ACT domain protein gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1610 Tpau_1611 Tpau_1611 Tpau_1611 1687438 1689006 + signal recognition particle protein TIGRFAM: signal recognition particle protein~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B Signal peptide binding (SRP54) M- domain protein%3B GTP-binding signal recognition particle SRP54 helical bundle~KEGG: nfa:nfa41600 putative signal recognition particle protein~SMART: AAA ATPase gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1611 Tpau_1612 Tpau_1612 Tpau_1612 1689030 1690106 + amidohydrolase PFAM: amidohydrolase~KEGG: ami:Amir_5929 amidohydrolase gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1612 Tpau_1613 Tpau_1613 Tpau_1613 1690176 1691060 + conserved hypothetical protein KEGG: cai:Caci_2470 hypothetical protein gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1613 Tpau_1614 Tpau_1614 Tpau_1614 1691076 1691963 - transcriptional regulator%2C MerR family KEGG: sma:SAV_2781 MerR family transcriptional regulator~PFAM: regulatory protein MerR%3B Transcription regulator MerR DNA binding~SMART: regulatory protein MerR gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1614 Tpau_1615 Tpau_1615 Tpau_1615 1691998 1693215 - acyltransferase 3 PFAM: acyltransferase 3~KEGG: kra:Krad_1450 acyltransferase 3 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1615 Tpau_1616 Tpau_1616 Tpau_1616 1693415 1694881 - glutamate decarboxylase KEGG: rop:ROP_60750 glutamate decarboxylase~TIGRFAM: glutamate decarboxylase~PFAM: Pyridoxal-dependent decarboxylase gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1616 Tpau_1617 Tpau_1617 Tpau_1617 1695019 1695486 + ribosomal protein S16 KEGG: msm:MSMEG_2435 30S ribosomal protein S16~TIGRFAM: ribosomal protein S16~PFAM: ribosomal protein S16 gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1617 Tpau_1618 Tpau_1618 Tpau_1618 1695487 1695735 + conserved hypothetical protein KEGG: rop:ROP_65880 hypothetical protein gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1618 Tpau_1619 Tpau_1619 Tpau_1619 1695741 1696262 + 16S rRNA processing protein RimM KEGG: nfa:nfa41550 16S rRNA-processing protein RimM~TIGRFAM: 16S rRNA processing protein RimM~PFAM: RimM protein%3B PRC-barrel domain protein gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1619 Tpau_1620 Tpau_1620 Tpau_1620 1696259 1696951 + tRNA (guanine-N1)-methyltransferase TIGRFAM: tRNA (guanine-N1)-methyltransferase~KEGG: rop:ROP_65900 tRNA (guanine-N(1)-)- methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1620 Tpau_1621 Tpau_1621 Tpau_1621 1697097 1697387 + hypothetical protein gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1621 Tpau_1622 Tpau_1622 Tpau_1622 1697470 1698141 + two component transcriptional regulator%2C winged helix family KEGG: rha:RHA1_ro00074 response regulator%2C two- component system~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1622 Tpau_1623 Tpau_1623 Tpau_1623 1698156 1699214 + integral membrane sensor signal transduction histidine kinase KEGG: sgr:SGR_2134 putative two-component system sensor kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1623 Tpau_1624 Tpau_1624 Tpau_1624 1699296 1699598 + hypothetical protein KEGG: svi:Svir_07850 hypothetical protein gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1624 Tpau_1625 Tpau_1625 Tpau_1625 1699595 1699873 + hypothetical protein gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1625 Tpau_1626 Tpau_1626 Tpau_1626 1699870 1700757 + hypothetical protein KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain-containing protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1626 Tpau_1627 Tpau_1627 Tpau_1627 1700741 1701160 + hypothetical protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1627 Tpau_1628 Tpau_1628 Tpau_1628 1701170 1703560 + Tex-like protein protein-like protein KEGG: msm:MSMEG_2839 transcriptional accessory protein~PFAM: Tex-like protein-like%3B RNA binding S1 domain protein~SMART: Resolvase RNase H domain protein fold gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1628 Tpau_1629 Tpau_1629 Tpau_1629 1703617 1704594 + conserved hypothetical protein KEGG: rer:RER_24560 hypothetical protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1629 Tpau_1630 Tpau_1630 Tpau_1630 1704656 1704997 + ribosomal protein L19 KEGG: nfa:nfa41470 50S ribosomal protein L19~TIGRFAM: ribosomal protein L19~PFAM: ribosomal protein L19 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1630 Tpau_1631 Tpau_1631 Tpau_1631 1705061 1705927 + signal peptidase I TIGRFAM: signal peptidase I~KEGG: mmi:MMAR_1805 signal peptidase I LepB~PFAM: Peptidase S24/S26A/S26B%2C conserved region gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1631 Tpau_1632 Tpau_1632 Tpau_1632 1705934 1706620 + Ribonuclease H KEGG: rer:RER_24590 ribonuclease HII~PFAM: ribonuclease HII/HIII gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1632 Tpau_1633 Tpau_1633 Tpau_1633 1706663 1706968 + Protein of unknown function DUF2469 PFAM: Protein of unknown function DUF2469~KEGG: rop:ROP_65970 hypothetical protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1633 Tpau_1634 Tpau_1634 Tpau_1634 1707116 1707382 - hypothetical protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1634 Tpau_1635 Tpau_1635 Tpau_1635 1707379 1708602 - oxidoreductase domain protein PFAM: oxidoreductase domain protein~KEGG: ach:Achl_1753 oxidoreductase domain protein gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1635 Tpau_1636 Tpau_1636 Tpau_1636 1708637 1709707 - ABC transporter related protein KEGG: rop:ROP_55600 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1636 Tpau_1637 Tpau_1637 Tpau_1637 1710224 1711135 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: bfa:Bfae_07470 carbohydrate ABC transporter membrane protein gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1637 Tpau_1638 Tpau_1638 Tpau_1638 1711149 1712084 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: bcv:Bcav_2818 binding-protein-dependent transport systems inner membrane component gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1638 Tpau_1639 Tpau_1639 Tpau_1639 1712084 1713475 + extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: aau:AAur_3361 putative extracellular sugar- binding protein gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1639 Tpau_1640 Tpau_1640 Tpau_1640 1713602 1714870 + conserved hypothetical protein KEGG: mjl:Mjls_1274 hypothetical protein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1640 Tpau_1641 Tpau_1641 Tpau_1641 1715063 1715431 + protein of unknown function UPF0102 PFAM: protein of unknown function UPF0102~KEGG: fra:Francci3_3586 hypothetical protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1641 Tpau_1642 Tpau_1642 Tpau_1642 1715431 1716951 + Mg chelatase%2C subunit ChlI TIGRFAM: Mg chelatase%2C subunit ChlI~PFAM: magnesium chelatase ChlI subunit%3B ATPase associated with various cellular activities AAA_5~KEGG: rop:ROP_66040 hypothetical protein~SMART: AAA ATPase gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1642 Tpau_1643 Tpau_1643 Tpau_1643 1716948 1718114 + DNA protecting protein DprA KEGG: mmi:MMAR_1814 hypothetical protein~TIGRFAM: DNA protecting protein DprA~PFAM: SMF family protein gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1643 Tpau_1644 Tpau_1644 Tpau_1644 1718132 1718584 - hypothetical protein KEGG: hne:HNE_0286 DNA-binding protein gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1644 Tpau_1645 Tpau_1645 Tpau_1645 1718754 1718891 - hypothetical protein gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1645 Tpau_1646 Tpau_1646 Tpau_1646 1719496 1720515 - acyltransferase PapA5 KEGG: saq:Sare_1262 acyltransferase PapA5 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1646 Tpau_1647 Tpau_1647 Tpau_1647 1720595 1720924 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1647 Tpau_1648 Tpau_1648 Tpau_1648 1720921 1721829 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1648 Tpau_1649 Tpau_1649 Tpau_1649 1722323 1723600 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: sco:SCO6690 transmembrane transport protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1649 Tpau_1650 Tpau_1650 Tpau_1650 1723604 1724137 - Domain of unknown function DUF1905 PFAM: Domain of unknown function DUF1905~KEGG: bfa:Bfae_06800 protein of unknown function (DUF1905) gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1650 Tpau_1651 Tpau_1651 Tpau_1651 1724405 1725280 + NLPA lipoprotein PFAM: NLPA lipoprotein~KEGG: rha:RHA1_ro01756 D-methionine-binding lipoprotein gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1651 Tpau_1652 Tpau_1652 Tpau_1652 1725277 1726323 + ABC transporter related protein KEGG: aau:AAur_3447 putative ABC transporter%2C ATP- binding protein~PFAM: ABC transporter related%3B NIL domain~SMART: AAA ATPase gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1652 Tpau_1653 Tpau_1653 Tpau_1653 1726320 1727012 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: cdi:DIP0608 ABC transporter gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1653 Tpau_1654 Tpau_1654 Tpau_1654 1727148 1728044 + integrase family protein PFAM: integrase family protein%3B integrase domain protein SAM domain protein~KEGG: mva:Mvan_2207 site-specific tyrosine recombinase XerC gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1654 Tpau_1655 Tpau_1655 Tpau_1655 1728070 1728408 + AIG2 family protein PFAM: AIG2 family protein~KEGG: bcv:Bcav_1012 AIG2 family protein gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1655 Tpau_1656 Tpau_1656 Tpau_1656 1728410 1729985 - pseudogene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1656 Tpau_1657 Tpau_1657 Tpau_1657 1730036 1730545 - Peptidase M23 PFAM: Peptidase M23~KEGG: nfa:nfa41330 putative peptidase gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1657 Tpau_1658 Tpau_1658 Tpau_1658 1730648 1731706 - peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: rop:ROP_28800 peptidase M48 family protein gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1658 Tpau_1659 Tpau_1659 Tpau_1659 1731716 1732912 - drug resistance transporter%2C Bcr/CflA subfamily KEGG: svi:Svir_13380 drug resistance transporter%2C Bcr/CflA subfamily~TIGRFAM: drug resistance transporter%2C Bcr/CflA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1659 Tpau_1660 Tpau_1660 Tpau_1660 1733134 1734498 + sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter~KEGG: rha:RHA1_ro01794 dicarboxylate/amino acid:cation symporter gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1660 Tpau_1661 Tpau_1661 Tpau_1661 1734485 1735393 - Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein~KEGG: kpe:KPK_3189 acohol dehydrogenase domain protein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1661 Tpau_1662 Tpau_1662 Tpau_1662 1735451 1736092 + transcriptional regulator%2C TetR family PFAM: Tetracyclin repressor domain protein%3B regulatory protein TetR~KEGG: sma:SAV_3379 TetR family transcriptional regulator gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1662 Tpau_1663 Tpau_1663 Tpau_1663 1736097 1737572 - Carboxylesterase type B PFAM: Carboxylesterase type B~KEGG: sen:SACE_2543 putative para-nitrobenzyl esterase gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1663 Tpau_1664 Tpau_1664 Tpau_1664 1737669 1738262 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_2542 TetR family transcriptional regulator gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1664 Tpau_1665 Tpau_1665 Tpau_1665 1738350 1741232 + pseudogene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1665 Tpau_1666 Tpau_1666 Tpau_1666 1738700 1739608 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1666 Tpau_1667 Tpau_1667 Tpau_1667 1739605 1739934 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1667 Tpau_1668 Tpau_1668 Tpau_1668 1741498 1742346 + ribosomal protein S2 KEGG: nfa:nfa41310 30S ribosomal protein S2~TIGRFAM: ribosomal protein S2~PFAM: ribosomal protein S2 gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1668 Tpau_1669 Tpau_1669 Tpau_1669 1742395 1743219 + translation elongation factor Ts KEGG: rop:ROP_66130 elongation factor Ts~TIGRFAM: translation elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B dimerisation%3B ubiquitin-associated- domain-containing protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1669 Tpau_1670 Tpau_1670 Tpau_1670 1743340 1743735 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: rop:ROP_60780 hypothetical protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1670 Tpau_1671 Tpau_1671 Tpau_1671 1743708 1744493 + Helix-turn-helix%2C AraC domain protein SMART: Helix-turn-helix%2C AraC domain~KEGG: fre:Franean1_7200 AraC family transcriptional regulator gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1671 Tpau_1672 Tpau_1672 Tpau_1672 1744540 1745427 + GDSL-like lipase/acylhydrolase KEGG: svi:Svir_03570 GDSL-like lipase/acylhydrolase gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1672 Tpau_1673 Tpau_1673 Tpau_1673 1745438 1746196 + uridylate kinase KEGG: rer:RER_25440 uridylate kinase~TIGRFAM: uridylate kinase~PFAM: aspartate/glutamate/uridylate kinase gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1673 Tpau_1674 Tpau_1674 Tpau_1674 1746242 1746799 + ribosome recycling factor KEGG: nfa:nfa41280 ribosome recycling factor~TIGRFAM: ribosome recycling factor~PFAM: ribosome recycling factor gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1674 Tpau_1675 Tpau_1675 Tpau_1675 1746802 1747692 + phosphatidate cytidylyltransferase PFAM: phosphatidate cytidylyltransferase~KEGG: rer:RER_25460 phosphatidate cytidylyltransferase gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1675 Tpau_1676 Tpau_1676 Tpau_1676 1747689 1748960 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rer:RER_50480 MFS transporter gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1676 Tpau_1677 Tpau_1677 Tpau_1677 1749010 1749390 - conserved hypothetical protein KEGG: rop:ROP_66190 hypothetical membrane protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1677 Tpau_1678 Tpau_1678 Tpau_1678 1749448 1750563 + radical SAM enzyme%2C Cfr family KEGG: rer:RER_25500 rRNA methyltransferase~TIGRFAM: radical SAM enzyme%2C Cfr family~PFAM: Radical SAM domain protein gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1678 Tpau_1679 Tpau_1679 Tpau_1679 1750607 1750867 - conserved hypothetical protein KEGG: nfa:nfa41210 hypothetical protein gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1679 Tpau_1680 Tpau_1680 Tpau_1680 1750994 1751305 + protein of unknown function DUF952 PFAM: protein of unknown function DUF952~KEGG: syd:Syncc9605_1636 glutathione S-transferase domain-containing protein gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1680 Tpau_1681 Tpau_1681 Tpau_1681 1751383 1751955 - hypothetical protein KEGG: cur:cur_1560 hypothetical protein gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1681 Tpau_1682 Tpau_1682 Tpau_1682 1752067 1753209 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~KEGG: nfa:nfa41200 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1682 Tpau_1683 Tpau_1683 Tpau_1683 1753298 1754536 + peptidase M50 KEGG: mab:MAB_3170c protease/peptidase~PFAM: peptidase M50~SMART: PDZ/DHR/GLGF domain protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1683 Tpau_1684 Tpau_1684 Tpau_1684 1754553 1755704 + 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase~KEGG: nfa:nfa41180 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~PFAM: IspG family protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1684 Tpau_1685 Tpau_1685 Tpau_1685 1755736 1756569 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rha:RHA1_ro06591 acetyltransferase gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1685 Tpau_1686 Tpau_1686 Tpau_1686 1756662 1757138 + protein of unknown function DUF456 PFAM: protein of unknown function DUF456~KEGG: rha:RHA1_ro02244 hypothetical protein gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1686 Tpau_1687 Tpau_1687 Tpau_1687 1757142 1757513 - Ion transport 2 domain protein PFAM: Ion transport 2 domain protein~KEGG: esi:Exig_2746 ion transport 2 domain- containing protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1687 Tpau_1688 Tpau_1688 Tpau_1688 1757552 1758283 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: hypothetical protein gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1688 Tpau_1689 Tpau_1689 Tpau_1689 1758284 1759578 - pseudogene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1689 Tpau_1690 Tpau_1690 Tpau_1690 1759701 1761539 + penicillin-binding protein transpeptidase PFAM: penicillin-binding protein transpeptidase%3B NTF2 domain protein transpeptidase~KEGG: rop:ROP_66260 putative penicillin-binding protein gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1690 Tpau_1691 Tpau_1691 Tpau_1691 1761588 1762184 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rer:RER_19660 hypothetical protein gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1691 Tpau_1692 Tpau_1692 Tpau_1692 1762241 1763101 + methionine aminopeptidase%2C type I TIGRFAM: methionine aminopeptidase%2C type I~KEGG: rer:RER_25890 methionine aminopeptidase~PFAM: peptidase M24 gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1692 Tpau_1693 Tpau_1693 Tpau_1693 1763108 1764631 + cobyric acid synthase CobQ KEGG: rer:RER_25900 cobyric acid synthase~TIGRFAM: cobyric acid synthase CobQ~PFAM: CobB/CobQ domain protein glutamine amidotransferase%3B Cobyrinic acid ac-diamide synthase gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1693 Tpau_1694 Tpau_1694 Tpau_1694 1764643 1765476 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rha:RHA1_ro01411 haloalkane dehalogenase gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1694 Tpau_1695 Tpau_1695 Tpau_1695 1765482 1765574 + hypothetical protein gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1695 Tpau_1696 Tpau_1696 Tpau_1696 1765590 1766999 - pyridine nucleotide-disulfide oxidoreductase dimerization region PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase~KEGG: mab:MAB_0062 mycothione reductase gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1696 Tpau_1697 Tpau_1697 Tpau_1697 1766996 1767994 - conserved hypothetical protein KEGG: tfu:Tfu_1558 hypothetical protein gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1697 Tpau_1698 Tpau_1698 Tpau_1698 1768129 1769625 + malate/quinone oxidoreductase TIGRFAM: malate/quinone oxidoreductase~KEGG: rer:RER_26040 malate--quinone oxidoreductase~PFAM: Malate:quinone-oxidoreductase%3B FAD dependent oxidoreductase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1698 Tpau_1699 Tpau_1699 Tpau_1699 1769629 1770063 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mlu:Mlut_20990 predicted acyltransferase gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1699 Tpau_1700 Tpau_1700 Tpau_1700 1770056 1771912 + Sigma 54 interacting domain protein KEGG: nfa:nfa40830 putative magnesium chelatase subunit~PFAM: ATPase associated with various cellular activities AAA_5%3B magnesium chelatase ChlI subunit%3B von Willebrand factor type A~SMART: von Willebrand factor type A%3B AAA ATPase gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1700 Tpau_1701 Tpau_1701 Tpau_1701 1771929 1772546 + cob(I)alamin adenosyltransferase TIGRFAM: cob(I)alamin adenosyltransferase~KEGG: rer:RER_26070 cob(I)alamin adenosyltransferase~PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1701 Tpau_1702 Tpau_1702 Tpau_1702 1772557 1773882 + cobyrinic acid a%2Cc-diamide synthase KEGG: rha:RHA1_ro06616 cobyrinic acid a%2Cc-diamide synthase~TIGRFAM: cobyrinic acid a%2Cc-diamide synthase~PFAM: Cobyrinic acid ac-diamide synthase%3B CobB/CobQ domain protein glutamine amidotransferase gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1702 Tpau_1703 Tpau_1703 Tpau_1703 1774000 1775235 + uroporphyrin-III C-methyltransferase KEGG: nfa:nfa40770 putative uroporphyrinogen III methylase~TIGRFAM: uroporphyrin-III C-methyltransferase%3B siroheme synthase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1703 Tpau_1704 Tpau_1704 Tpau_1704 1775450 1777723 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: rop:ROP_66540 putative MFS transporter~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1704 Tpau_1705 Tpau_1705 Tpau_1705 1777832 1780033 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rha:RHA1_ro06618 major facilitator superfamily multidrug transporter gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1705 Tpau_1706 Tpau_1706 Tpau_1706 1780066 1780821 - protein of unknown function DUF328 PFAM: protein of unknown function DUF328~KEGG: nfa:nfa40740 hypothetical protein gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1706 Tpau_1707 Tpau_1707 Tpau_1707 1780838 1782595 + prolyl-tRNA synthetase TIGRFAM: prolyl-tRNA synthetase~KEGG: rer:RER_26150 prolyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B YbaK/prolyl-tRNA synthetase associated region%3B Anticodon- binding domain protein gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1707 Tpau_1708 Tpau_1708 Tpau_1708 1782713 1784272 + HNH endonuclease KEGG: mmi:MMAR_2226 13e12 repeat-containing protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1708 Tpau_1709 Tpau_1709 Tpau_1709 1784358 1785107 - conserved hypothetical protein KEGG: stp:Strop_3808 hypothetical protein gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1709 Tpau_1710 Tpau_1710 Tpau_1710 1785135 1785569 - conserved hypothetical protein KEGG: rha:RHA1_ro06639 hypothetical protein gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1710 Tpau_1711 Tpau_1711 Tpau_1711 1785566 1786075 - conserved hypothetical protein KEGG: nfa:nfa40700 hypothetical protein gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1711 Tpau_1712 Tpau_1712 Tpau_1712 1786197 1786769 + protein of unknown function DUF150 PFAM: protein of unknown function DUF150~KEGG: rop:ROP_66800 hypothetical protein gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1712 Tpau_1713 Tpau_1713 Tpau_1713 1786770 1787771 + NusA antitermination factor KEGG: nfa:nfa40680 transcription elongation factor NusA~TIGRFAM: transcription termination factor NusA~PFAM: NusA domain protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1713 Tpau_1714 Tpau_1714 Tpau_1714 1787768 1788013 + protein of unknown function DUF448 PFAM: protein of unknown function DUF448~KEGG: rha:RHA1_ro06643 hypothetical protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1714 Tpau_1715 Tpau_1715 Tpau_1715 1788214 1791018 + translation initiation factor IF-2 KEGG: rop:ROP_66830 translation initiation factor IF-2~TIGRFAM: translation initiation factor IF-2%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B translation initiation factor IF-2 domain protein%3B Miro domain protein%3B elongation factor Tu domain 2 protein gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1715 Tpau_1716 Tpau_1716 Tpau_1716 1791030 1791320 + protein of unknown function DUF503 PFAM: protein of unknown function DUF503~KEGG: nfa:nfa40660 hypothetical protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1716 Tpau_1717 Tpau_1717 Tpau_1717 1791410 1791883 + ribosome-binding factor A KEGG: rer:RER_26340 ribosome-binding factor A~TIGRFAM: ribosome-binding factor A~PFAM: ribosome-binding factor A gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1717 Tpau_1718 Tpau_1718 Tpau_1718 1791880 1792824 + phosphoesterase RecJ domain protein PFAM: phosphoesterase RecJ domain protein%3B phosphoesterase DHHA1~KEGG: rer:RER_26350 hypothetical protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1718 Tpau_1719 Tpau_1719 Tpau_1719 1792821 1794146 + MATE efflux family protein KEGG: nfa:nfa40630 putative DNA-damage-inducible protein F~TIGRFAM: MATE efflux family protein~PFAM: multi antimicrobial extrusion protein MatE gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1719 Tpau_1720 Tpau_1720 Tpau_1720 1794183 1794614 + hypothetical protein KEGG: predicted protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1720 Tpau_1721 Tpau_1721 Tpau_1721 1794624 1795880 - Formamidase KEGG: msm:MSMEG_4367 formamidase~PFAM: Acetamidase/Formamidase gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1721 Tpau_1722 Tpau_1722 Tpau_1722 1795910 1796185 - regulatory protein%2C FmdB family KEGG: rop:ROP_18420 putative regulatory protein~TIGRFAM: regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1722 Tpau_1723 Tpau_1723 Tpau_1723 1796252 1796593 + HNH nuclease SMART: HNH nuclease~KEGG: msm:MSMEG_4691 HNH nuclease gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1723 Tpau_1724 Tpau_1724 Tpau_1724 1796508 1797380 - conserved hypothetical protein KEGG: nfa:nfa3120 hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1724 Tpau_1725 Tpau_1725 Tpau_1725 1797422 1798408 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: rha:RHA1_ro06649 metallophosphoesterase gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1725 Tpau_1726 Tpau_1726 Tpau_1726 1798405 1799076 + 4'-phosphopantetheinyl transferase PFAM: 4'-phosphopantetheinyl transferase~KEGG: rer:RER_26380 phosphopantetheinyl transferase gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1726 Tpau_1727 Tpau_1727 Tpau_1727 1799078 1799971 + tRNA pseudouridine synthase B KEGG: rha:RHA1_ro06651 tRNA pseudouridine synthase B~TIGRFAM: tRNA pseudouridine synthase B~PFAM: pseudouridylate synthase TruB domain protein%3B tRNA pseudouridine synthase II gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1727 Tpau_1728 Tpau_1728 Tpau_1728 1799924 1801099 - hypothetical protein KEGG: rha:RHA1_ro05731 ribosomal-protein-alanine N- acetyltransferase gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1728 Tpau_1729 Tpau_1729 Tpau_1729 1801178 1802299 - Citrate (Si)-synthase KEGG: sgr:SGR_1691 putative citrate synthase~PFAM: Citrate synthase gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1729 Tpau_1730 Tpau_1730 Tpau_1730 1802353 1803426 + DNA binding domain protein%2C excisionase family KEGG: sma:SAV_2428 citrate synthase-like protein~TIGRFAM: DNA binding domain protein%2C excisionase family~PFAM: Citrate synthase%3B regulatory protein MerR gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1730 Tpau_1731 Tpau_1731 Tpau_1731 1803423 1804094 + DNA alkylation repair enzyme PFAM: DNA alkylation repair enzyme~KEGG: rsa:RSal33209_3303 hypothetical protein gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1731 Tpau_1732 Tpau_1732 Tpau_1732 1804101 1804799 - iron (metal) dependent repressor%2C DtxR family KEGG: mtb:TBMG_01186 transcriptional repressor SirR~PFAM: iron dependent repressor%3B FeoA family protein%3B regulatory protein MarR~SMART: iron dependent repressor%3B regulatory protein Crp gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1732 Tpau_1733 Tpau_1733 Tpau_1733 1804834 1805796 + riboflavin biosynthesis protein RibF KEGG: rop:ROP_66920 flavokinase/FAD synthetase~TIGRFAM: riboflavin biosynthesis protein RibF~PFAM: FAD synthetase%3B Riboflavin kinase gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1733 Tpau_1734 Tpau_1734 Tpau_1734 1805884 1806153 + ribosomal protein S15 KEGG: mab:MAB_3108c 30S ribosomal protein S15~TIGRFAM: ribosomal protein S15~PFAM: ribosomal protein S15 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1734 Tpau_1735 Tpau_1735 Tpau_1735 1806319 1807935 + Alkaline phosphatase KEGG: sgr:SGR_5228 putative alkaline phosphatase~PFAM: Alkaline phosphatase D-related gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1735 Tpau_1736 Tpau_1736 Tpau_1736 1807962 1808609 - conserved hypothetical protein KEGG: kse:Ksed_10070 hypothetical protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1736 Tpau_1737 Tpau_1737 Tpau_1737 1808615 1811977 - lysyl-tRNA synthetase TIGRFAM: lysyl-tRNA synthetase~KEGG: krh:KRH_21510 putative lysyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B protein of unknown function DUF472%3B protein of unknown function DUF471%3B protein of unknown function DUF470%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1737 Tpau_1738 Tpau_1738 Tpau_1738 1812311 1814563 + polyribonucleotide nucleotidyltransferase SMART: KH domain protein~TIGRFAM: polyribonucleotide nucleotidyltransferase%3B guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase~KEGG: rha:RHA1_ro06655 polynucleotide phosphorylase/polyadenylase~PFAM: 3' exoribonuclease%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type%3B RNA binding S1 domain protein%3B Exoribonuclease%2C phosphorolytic domain 2%3B K Homology%2C type 1%2C subgroup gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1738 Tpau_1739 Tpau_1739 Tpau_1739 1814567 1815898 + peptidase M16 domain protein PFAM: peptidase M16 domain protein~KEGG: rha:RHA1_ro06734 metalloendopeptidase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1739 Tpau_1740 Tpau_1740 Tpau_1740 1815958 1816962 - glycerophosphoryl diester phosphodiesterase PFAM: glycerophosphoryl diester phosphodiesterase~KEGG: mkm:Mkms_4820 glycerophosphoryl diester phosphodiesterase gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1740 Tpau_1741 Tpau_1741 Tpau_1741 1817049 1818620 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: sen:SACE_5170 L-asparagine permease gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1741 Tpau_1742 Tpau_1742 Tpau_1742 1818759 1820639 + cyclic nucleotide-binding protein KEGG: mkm:Mkms_2510 cyclic nucleotide-binding protein~PFAM: protein of unknown function DUF294 nucleotidyltransferase putative%3B Domain of unknown function DUF294%2C putative nucleotidyltransferase substrate-binding%3B CBS domain containing protein~SMART: CBS domain containing protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1742 Tpau_1743 Tpau_1743 Tpau_1743 1820649 1821764 - alanine dehydrogenase TIGRFAM: alanine dehydrogenase~KEGG: mjl:Mjls_2087 L-alanine dehydrogenase~PFAM: alanine dehydrogenase/PNT domain protein gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1743 Tpau_1744 Tpau_1744 Tpau_1744 1821863 1822372 + transcriptional regulator%2C AsnC family KEGG: mab:MAB_3099c AsnC family transcriptional regulator~PFAM: Transcription regulator%2C AsnC-type-like~SMART: Transcription regulator%2C AsnC-type gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1744 Tpau_1745 Tpau_1745 Tpau_1745 1822485 1823960 + permease for cytosine/purines uracil thiamine allantoin PFAM: permease for cytosine/purines uracil thiamine allantoin~KEGG: aau:AAur_3952 putative cytosine/purine/uracil/thiamine/allantoin permease family protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1745 Tpau_1746 Tpau_1746 Tpau_1746 1823957 1825615 + Amidohydrolase 3 PFAM: Amidohydrolase 3%3B amidohydrolase~KEGG: rer:RER_47290 hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1746 Tpau_1747 Tpau_1747 Tpau_1747 1825625 1826350 + Pirin domain protein PFAM: Pirin domain protein~KEGG: rer:RER_49560 hypothetical protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1747 Tpau_1748 Tpau_1748 Tpau_1748 1826405 1829140 + conserved hypothetical protein KEGG: kra:Krad_4427 hypothetical protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1748 Tpau_1749 Tpau_1749 Tpau_1749 1829233 1830567 + L-lysine 6-monooxygenase (NADPH) KEGG: cur:cur_0328 putative L-ornithine N5- oxygenase gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1749 Tpau_1750 Tpau_1750 Tpau_1750 1830564 1831394 + conserved hypothetical protein KEGG: mab:MAB_1936 hypothetical protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1750 Tpau_1751 Tpau_1751 Tpau_1751 1831391 1833607 + MMPL domain protein PFAM: MMPL domain protein~KEGG: mjl:Mjls_4293 MmpL domain-containing protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1751 Tpau_1752 Tpau_1752 Tpau_1752 1833634 1834908 + AAA ATPase central domain protein KEGG: cai:Caci_2076 AAA ATPase central domain protein~PFAM: AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5~SMART: AAA ATPase gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1752 Tpau_1753 Tpau_1753 Tpau_1753 1834905 1836005 + TPR repeat-containing protein KEGG: msm:MSMEG_1855 TPR repeat-containing protein~PFAM: TPR repeat-containing protein%3B Tetratricopeptide TPR_2 repeat protein~SMART: Tetratricopeptide repeat gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1753 Tpau_1754 Tpau_1754 Tpau_1754 1836002 1836976 - Mg2 transporter protein CorA family protein PFAM: Mg2 transporter protein CorA family protein~KEGG: rop:ROP_15480 putative metal ion transport protein gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1754 Tpau_1755 Tpau_1755 Tpau_1755 1836987 1837367 - conserved hypothetical protein KEGG: bcv:Bcav_3381 hypothetical protein gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1755 Tpau_1756 Tpau_1756 Tpau_1756 1837391 1838134 + dihydrodipicolinate reductase TIGRFAM: dihydrodipicolinate reductase~KEGG: mva:Mvan_2374 dihydrodipicolinate reductase~PFAM: dihydrodipicolinate reductase gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1756 Tpau_1757 Tpau_1757 Tpau_1757 1838131 1838607 + conserved hypothetical protein KEGG: msm:MSMEG_2665 hypothetical protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1757 Tpau_1758 Tpau_1758 Tpau_1758 1838607 1839062 + conserved hypothetical protein KEGG: nfa:nfa38790 hypothetical protein gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1758 Tpau_1759 Tpau_1759 Tpau_1759 1839178 1840410 + HNH nuclease SMART: HNH nuclease~KEGG: mpa:MAP3151 hypothetical protein gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1759 Tpau_1760 Tpau_1760 Tpau_1760 1840468 1841265 + thymidylate synthase TIGRFAM: thymidylate synthase~KEGG: mab:MAB_3091c thymidylate synthase (ThyA)~PFAM: thymidylate synthase gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1760 Tpau_1761 Tpau_1761 Tpau_1761 1841265 1841741 + Dihydrofolate reductase KEGG: kra:Krad_4438 dihydrofolate reductase~PFAM: dihydrofolate reductase region gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1761 Tpau_1762 Tpau_1762 Tpau_1762 1841778 1842683 + dihydrodipicolinate synthase KEGG: rer:RER_27320 dihydrodipicolinate synthase~TIGRFAM: dihydrodipicolinate synthase~PFAM: dihydrodipicolinate synthetase gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1762 Tpau_1763 Tpau_1763 Tpau_1763 1842687 1844639 + beta-lactamase domain protein PFAM: beta-lactamase domain protein%3B RNA- metabolising metallo-beta-lactamase~KEGG: rha:RHA1_ro06748 hypothetical protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1763 Tpau_1764 Tpau_1764 Tpau_1764 1844662 1845273 - hypothetical protein gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1764 Tpau_1765 Tpau_1765 Tpau_1765 1845270 1845869 - hypothetical protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1765 Tpau_1766 Tpau_1766 Tpau_1766 1845866 1846435 - hypothetical protein gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1766 Tpau_1767 Tpau_1767 Tpau_1767 1846432 1847007 - hypothetical protein gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1767 Tpau_1768 Tpau_1768 Tpau_1768 1847004 1847576 - hypothetical protein gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1768 Tpau_1769 Tpau_1769 Tpau_1769 1847605 1848198 - hypothetical protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1769 Tpau_1770 Tpau_1770 Tpau_1770 1848308 1848925 + conserved hypothetical protein KEGG: msm:MSMEG_0703 hypothetical protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1770 Tpau_1771 Tpau_1771 Tpau_1771 1848999 1851683 + cell division FtsK/SpoIIIE PFAM: cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~KEGG: rha:RHA1_ro06750 DNA translocase FtsK gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1771 Tpau_1772 Tpau_1772 Tpau_1772 1851830 1852828 + Integral membrane protein TerC PFAM: Integral membrane protein TerC~KEGG: rop:ROP_67370 putative TerC family integral membrane protein gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1772 Tpau_1773 Tpau_1773 Tpau_1773 1852838 1853575 - modification methylase%2C HemK family KEGG: cai:Caci_4759 modification methylase%2C HemK family gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1773 Tpau_1774 Tpau_1774 Tpau_1774 1853656 1854162 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rop:ROP_67390 putative acetyltransferase gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1774 Tpau_1775 Tpau_1775 Tpau_1775 1854218 1854805 + CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase KEGG: sen:SACE_5881 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1775 Tpau_1776 Tpau_1776 Tpau_1776 1854783 1855274 + CinA domain protein PFAM: CinA domain protein~KEGG: svi:Svir_25150 competence/damage-inducible protein CinA gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1776 Tpau_1777 Tpau_1777 Tpau_1777 1855350 1855625 + helix-turn-helix domain protein KEGG: rop:ROP_67420 putative Xre family DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1777 Tpau_1778 Tpau_1778 Tpau_1778 1855791 1856609 + phage shock protein A%2C PspA PFAM: PspA/IM30 family protein~KEGG: mab:MAB_3067c hypothetical protein gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1778 Tpau_1779 Tpau_1779 Tpau_1779 1856680 1857486 + conserved hypothetical protein KEGG: rer:RER_27430 hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1779 Tpau_1780 Tpau_1780 Tpau_1780 1857611 1857781 + conserved hypothetical protein KEGG: rop:ROP_67450 hypothetical membrane protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1780 Tpau_1781 Tpau_1781 Tpau_1781 1857813 1858955 + conserved hypothetical protein KEGG: rha:RHA1_ro06763 hypothetical protein gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1781 Tpau_1782 Tpau_1782 Tpau_1782 1858965 1859156 + conserved hypothetical protein KEGG: nfa:nfa38490 hypothetical protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1782 Tpau_1783 Tpau_1783 Tpau_1783 1859157 1862306 - cell wall arabinan synthesis protein PFAM: cell wall arabinan synthesis protein~KEGG: rop:ROP_39470 arabinosyltransferase gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1783 Tpau_1784 Tpau_1784 Tpau_1784 1862474 1866058 + Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase~KEGG: rha:RHA1_ro00724 2-oxoacid ferredoxin oxidoreductase gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1784 Tpau_1785 Tpau_1785 Tpau_1785 1866415 1867467 + recA protein TIGRFAM: recA protein~PFAM: RecA domain protein~KEGG: rer:RER_27530 RecA protein~SMART: AAA ATPase gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1785 Tpau_1786 Tpau_1786 Tpau_1786 1867473 1868069 + regulatory protein RecX PFAM: regulatory protein RecX~KEGG: nfa:nfa38410 recombination regulator RecX gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1786 Tpau_1787 Tpau_1787 Tpau_1787 1868298 1868672 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: nfa:nfa19730 hypothetical protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1787 Tpau_1788 Tpau_1788 Tpau_1788 1868723 1869619 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: rop:ROP_67530 glutamate ABC transporter permease protein~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1788 Tpau_1789 Tpau_1789 Tpau_1789 1869616 1870299 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: mab:MAB_3052 putative glutamate ABC transporter%2C permease~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1789 Tpau_1790 Tpau_1790 Tpau_1790 1870296 1871267 - extracellular solute-binding protein family 3 KEGG: mab:MAB_3051 putative glutamate ABC transporter%2C periplasmic protein~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1790 Tpau_1791 Tpau_1791 Tpau_1791 1871267 1872037 - ABC transporter related protein KEGG: mab:MAB_3050 putative glutamate ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1791 Tpau_1792 Tpau_1792 Tpau_1792 1872195 1872350 + hypothetical protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1792 Tpau_1793 Tpau_1793 Tpau_1793 1872411 1873922 + RNA modification enzyme%2C MiaB family TIGRFAM: RNA modification enzyme%2C MiaB family%3B tRNA- i(6)A37 thiotransferase enzyme MiaB~PFAM: Protein of unknown function UPF0004 %3B Radical SAM domain protein~KEGG: nfa:nfa38350 hypothetical protein~SMART: Elongator protein 3/MiaB/NifB gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1793 Tpau_1794 Tpau_1794 Tpau_1794 1873972 1874613 + conserved hypothetical protein KEGG: rha:RHA1_ro06772 hypothetical protein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1794 Tpau_1795 Tpau_1795 Tpau_1795 1874615 1875454 - AAA ATPase SMART: AAA ATPase~KEGG: fal:FRAAL1799 putative ABC transporter gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1795 Tpau_1796 Tpau_1796 Tpau_1796 1875461 1876807 - protein of unknown function DUF349 PFAM: protein of unknown function DUF349~KEGG: rer:RER_27610 hypothetical protein gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1796 Tpau_1797 Tpau_1797 Tpau_1797 1876933 1877553 + conserved hypothetical protein KEGG: rha:RHA1_ro06774 hypothetical protein gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1797 Tpau_1798 Tpau_1798 Tpau_1798 1877550 1878470 + tRNA delta(2)-isopentenylpyrophosphate transferase TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~KEGG: rha:RHA1_ro06775 tRNA delta(2)- isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1798 Tpau_1799 Tpau_1799 Tpau_1799 1878481 1879353 + diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase~KEGG: rer:RER_27650 diaminopimelate epimerase~PFAM: diaminopimelate epimerase gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1799 Tpau_1800 Tpau_1800 Tpau_1800 1879416 1880855 + GTP-binding proten HflX KEGG: rha:RHA1_ro06778 GTP-binding protein~TIGRFAM: GTP-binding proten HflX~PFAM: GTP-binding protein HSR1-related gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1800 Tpau_1801 Tpau_1801 Tpau_1801 1880879 1881505 + protein of unknown function DUF1345 PFAM: protein of unknown function DUF1345~KEGG: rha:RHA1_ro03524 hypothetical protein gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1801 Tpau_1802 Tpau_1802 Tpau_1802 1881502 1882338 - transcriptional regulator%2C LysR family PFAM: regulatory protein LysR%3B LysR substrate- binding~KEGG: mav:MAV_0094 transcriptional regulator%2C LysR family protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1802 Tpau_1803 Tpau_1803 Tpau_1803 1882417 1883391 + protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: mab:MAB_3180 hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1803 Tpau_1804 Tpau_1804 Tpau_1804 1883462 1883809 + hypothetical protein gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1804 Tpau_1805 Tpau_1805 Tpau_1805 1883834 1884433 - putative transcriptional regulator KEGG: nfa:nfa23590 putative transcriptional regulator gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1805 Tpau_1806 Tpau_1806 Tpau_1806 1884489 1885721 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: mab:MAB_2495 acyl-CoA dehydrogenase gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1806 Tpau_1807 Tpau_1807 Tpau_1807 1885722 1886867 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mjl:Mjls_1723 acyl-CoA dehydrogenase domain- containing protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1807 Tpau_1808 Tpau_1808 Tpau_1808 1886933 1887643 - transcriptional repressor%2C LexA family TIGRFAM: LexA repressor~KEGG: mva:Mvan_2441 LexA repressor~PFAM: LexA DNA-binding domain protein%3B Peptidase S24/S26A/S26B%2C conserved region gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1808 Tpau_1809 Tpau_1809 Tpau_1809 1887898 1888542 + Peptidoglycan-binding lysin domain protein PFAM: Peptidoglycan-binding lysin domain~KEGG: msm:MSMEG_2742 DNA-damage-inducible protein gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1809 Tpau_1810 Tpau_1810 Tpau_1810 1888773 1889243 + ATP-cone domain protein PFAM: ATP-cone domain protein~KEGG: mab:MAB_3036c transcriptional regulator NrdR gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1810 Tpau_1811 Tpau_1811 Tpau_1811 1889254 1893189 - ATP-dependent helicase HrpA TIGRFAM: ATP-dependent helicase HrpA~PFAM: helicase-associated domain protein%3B protein of unknown function DUF1605%3B helicase domain protein~KEGG: nfa:nfa37970 putative ATP-dependent helicase~SMART: DEAD-like helicase %3B helicase domain protein%3B AAA ATPase gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1811 Tpau_1812 Tpau_1812 Tpau_1812 1893209 1894462 + aminotransferase class-III PFAM: aminotransferase class-III~KEGG: rha:RHA1_ro06796 adenosylmethionine-8-amino-7- oxononanoate transaminase gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1812 Tpau_1813 Tpau_1813 Tpau_1813 1894564 1894911 + protein of unknown function DUF485 PFAM: protein of unknown function DUF485~KEGG: bcv:Bcav_3374 protein of unknown function DUF485 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1813 Tpau_1814 Tpau_1814 Tpau_1814 1894908 1896545 + SSS sodium solute transporter superfamily KEGG: rer:RER_45270 acetate permease~TIGRFAM: SSS sodium solute transporter superfamily~PFAM: Na+/solute symporter gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1814 Tpau_1815 Tpau_1815 Tpau_1815 1896622 1897287 - hypothetical protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1815 Tpau_1816 Tpau_1816 Tpau_1816 1897367 1898281 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: rer:RER_27880 oxidative stress response regulatory protein OxyR gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1816 Tpau_1817 Tpau_1817 Tpau_1817 1898306 1898875 + isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: pjd:Pjdr2_2934 isochorismatase hydrolase gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1817 Tpau_1818 Tpau_1818 Tpau_1818 1898872 1899612 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding~KEGG: mjl:Mjls_1801 LysR family transcriptional regulator gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1818 Tpau_1819 Tpau_1819 Tpau_1819 1899642 1900028 + conserved hypothetical protein KEGG: mab:MAB_3410 hypothetical protein gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1819 Tpau_1820 Tpau_1820 Tpau_1820 1900075 1900536 + Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: msm:MSMEG_4744 hypothetical protein gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1820 Tpau_1821 Tpau_1821 Tpau_1821 1900538 1903033 - DEAD/DEAH box helicase domain protein KEGG: rop:ROP_67880 putative helicase~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1821 Tpau_1822 Tpau_1822 Tpau_1822 1903044 1904381 - amine oxidase PFAM: amine oxidase%3B FAD dependent oxidoreductase~KEGG: rop:ROP_04550 putative flavin-containing amine oxidase gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1822 Tpau_1823 Tpau_1823 Tpau_1823 1904471 1905439 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: mav:MAV_3609 hydrolase gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1823 Tpau_1824 Tpau_1824 Tpau_1824 1905511 1906440 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: mkm:Mkms_2218 alpha/beta hydrolase fold gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1824 Tpau_1825 Tpau_1825 Tpau_1825 1906437 1907372 - protein of unknown function DUF75 PFAM: protein of unknown function DUF75~KEGG: rop:ROP_67900 hypothetical protein gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1825 Tpau_1826 Tpau_1826 Tpau_1826 1907476 1907901 - transcriptional regulator%2C MarR family KEGG: rer:RER_52300 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1826 Tpau_1827 Tpau_1827 Tpau_1827 1907959 1908771 + hydrolase KEGG: rha:RHA1_ro06422 hydrolase gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1827 Tpau_1828 Tpau_1828 Tpau_1828 1908778 1910730 - conserved hypothetical protein KEGG: lxx:Lxx07620 hypothetical protein gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1828 Tpau_1829 Tpau_1829 Tpau_1829 1910919 1911980 + conserved hypothetical protein KEGG: mmi:MMAR_2001 hypothetical protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1829 Tpau_1830 Tpau_1830 Tpau_1830 1912003 1912986 - UDP-glucose 4-epimerase KEGG: cef:CE1813 UDP-glucose 4-epimerase~TIGRFAM: UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase%3B dTDP-4- dehydrorhamnose reductase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B polysaccharide biosynthesis protein CapD gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1830 Tpau_1831 Tpau_1831 Tpau_1831 1912993 1913676 - iron (metal) dependent repressor%2C DtxR family KEGG: nfa:nfa37790 putative transcriptional regulator~PFAM: iron dependent repressor%3B FeoA family protein~SMART: iron dependent repressor gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1831 Tpau_1832 Tpau_1832 Tpau_1832 1913874 1915106 + Histone deacetylase KEGG: rer:RER_28020 acetoin utilization protein~PFAM: histone deacetylase superfamily gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1832 Tpau_1833 Tpau_1833 Tpau_1833 1915099 1917810 + CoA-binding domain protein PFAM: CoA-binding domain protein%3B GCN5-related N- acetyltransferase~KEGG: rop:ROP_67970 putative acetate--CoA ligase gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1833 Tpau_1834 Tpau_1834 Tpau_1834 1917851 1918843 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily KEGG: nfa:nfa37750 RNA polymerase sigma factor SigB~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 3 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 region 4 domain protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1834 Tpau_1835 Tpau_1835 Tpau_1835 1918955 1920439 - methyltransferase small PFAM: methyltransferase small~KEGG: rer:RER_28050 hypothetical protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1835 Tpau_1836 Tpau_1836 Tpau_1836 1920456 1920812 - conserved hypothetical protein KEGG: rop:ROP_68000 hypothetical membrane protein gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1836 Tpau_1837 Tpau_1837 Tpau_1837 1920842 1921087 + conserved hypothetical protein KEGG: mva:Mvan_2453 hypothetical protein gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1837 Tpau_1838 Tpau_1838 Tpau_1838 1921088 1922302 - ribonuclease BN PFAM: ribonuclease BN~KEGG: rer:RER_28080 hypothetical protein gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1838 Tpau_1839 Tpau_1839 Tpau_1839 1922434 1924125 + type III restriction protein res subunit KEGG: rop:ROP_68030 hypothetical protein~PFAM: type III restriction protein res subunit~SMART: DEAD-like helicase gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1839 Tpau_1840 Tpau_1840 Tpau_1840 1924203 1924412 - hypothetical protein KEGG: rer:RER_28110 hypothetical protein gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1840 Tpau_1841 Tpau_1841 Tpau_1841 1924568 1927186 + pseudogene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1841 Tpau_1842 Tpau_1842 Tpau_1842 1924796 1926169 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1842 Tpau_1843 Tpau_1843 Tpau_1843 1926226 1926418 - pseudogene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1843 Tpau_1844 Tpau_1844 Tpau_1844 1927190 1927972 - hypothetical protein KEGG: cai:Caci_5231 hypothetical protein gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1844 Tpau_1845 Tpau_1845 Tpau_1845 1928145 1930211 + Endothelin-converting enzyme 1 KEGG: bcv:Bcav_2621 neprilysin~PFAM: peptidase M13%3B Peptidase M13%2C neprilysin- like gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1845 Tpau_1846 Tpau_1846 Tpau_1846 1930212 1931000 - Ethanolamine ammonia-lyase KEGG: rop:ROP_61430 ethanolamine ammonia-lyase small subunit~PFAM: Ethanolamine ammonia-lyase light chain gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1846 Tpau_1847 Tpau_1847 Tpau_1847 1930997 1932442 - Ethanolamine ammonia-lyase KEGG: rer:RER_18130 ethanolamine ammonia-lyase large subunit~PFAM: Ethanolamine ammonia lyase large subunit gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1847 Tpau_1848 Tpau_1848 Tpau_1848 1932492 1933931 - ethanolamine transporter KEGG: rha:RHA1_ro06083 ethanolamine permease%2C APC superfamily~TIGRFAM: ethanolamine transproter~PFAM: amino acid permease-associated region gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1848 Tpau_1849 Tpau_1849 Tpau_1849 1934079 1934249 - conserved hypothetical protein KEGG: tga:TGAM_1870 hypothetical protein gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1849 Tpau_1850 Tpau_1850 Tpau_1850 1934328 1935485 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: sgr:SGR_4769 putative acyl-CoA dehydrogenase gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1850 Tpau_1851 Tpau_1851 Tpau_1851 1935519 1936124 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa34140 putative transcriptional regulator gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1851 Tpau_1852 Tpau_1852 Tpau_1852 1936298 1937507 + pseudogene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1852 Tpau_1853 Tpau_1853 Tpau_1853 1937507 1938262 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: nfa:nfa34120 3-ketoacyl-(acyl-carrier- protein) reductase gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1853 Tpau_1854 Tpau_1854 Tpau_1854 1938267 1939070 + pseudogene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1854 Tpau_1855 Tpau_1855 Tpau_1855 1939070 1940059 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: rha:RHA1_ro01498 quinone oxidoreductase gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1855 Tpau_1856 Tpau_1856 Tpau_1856 1940056 1940730 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: rha:RHA1_ro02725 hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1856 Tpau_1857 Tpau_1857 Tpau_1857 1940727 1941482 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rha:RHA1_ro02340 3-oxoacyl-[acyl-carrier- protein] reductase gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1857 Tpau_1858 Tpau_1858 Tpau_1858 1941494 1941946 + Enoyl-CoA hydratase KEGG: sma:SAV_6603 hypothetical protein~PFAM: MaoC domain protein dehydratase gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1858 Tpau_1859 Tpau_1859 Tpau_1859 1941946 1942962 + aminoglycoside phosphotransferase PFAM: aminoglycoside phosphotransferase~KEGG: rha:RHA1_ro02722 phosphotransferase gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1859 Tpau_1860 Tpau_1860 Tpau_1860 1942964 1944187 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: nfa:nfa34080 putative acyl-CoA dehydrogenase gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1860 Tpau_1861 Tpau_1861 Tpau_1861 1944184 1945371 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: svi:Svir_16750 acyl-CoA dehydrogenase gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1861 Tpau_1862 Tpau_1862 Tpau_1862 1945368 1946453 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rop:ROP_12060 putative acyl-CoA dehydrogenase gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1862 Tpau_1863 Tpau_1863 Tpau_1863 1946482 1947462 + Aryldialkylphosphatase KEGG: rha:RHA1_ro01514 phosphotriesterase~PFAM: aryldialkylphosphatase gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1863 Tpau_1864 Tpau_1864 Tpau_1864 1947465 1948985 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: cai:Caci_4379 AMP-dependent synthetase and ligase gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1864 Tpau_1865 Tpau_1865 Tpau_1865 1949185 1950576 + General substrate transporter PFAM: General substrate transporter%3B major facilitator superfamily MFS_1~KEGG: rop:ROP_12170 putative MFS transporter gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1865 Tpau_1866 Tpau_1866 Tpau_1866 1950623 1951246 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_23970 putative TetR family transcriptional regulator gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1866 Tpau_1867 Tpau_1867 Tpau_1867 1951280 1957564 + pseudogene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1867 Tpau_1868 Tpau_1868 Tpau_1868 1952883 1954331 + plasmid pRiA4b ORF-3 family protein PFAM: plasmid pRiA4b ORF-3 family protein~KEGG: nca:Noca_0009 plasmid pRiA4b ORF-3 family protein gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1868 Tpau_1869 Tpau_1869 Tpau_1869 1954358 1954591 - hypothetical protein gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1869 Tpau_1870 Tpau_1870 Tpau_1870 1954642 1955466 - IstB domain protein ATP-binding protein PFAM: IstB domain protein ATP-binding protein~KEGG: art:Arth_1779 IstB ATP binding domain- containing protein gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1870 Tpau_1871 Tpau_1871 Tpau_1871 1955463 1957160 - transposase KEGG: art:Arth_1780 transposase gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1871 Tpau_1872 Tpau_1872 Tpau_1872 1957561 1960725 + Carbamoyl-phosphate synthase L chain ATP- binding protein PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B carboxyl transferase%3B biotin/lipoyl attachment domain-containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein~KEGG: rha:RHA1_ro02782 carboxylase gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1872 Tpau_1873 Tpau_1873 Tpau_1873 1960750 1961181 - conserved hypothetical protein KEGG: rer:RER_25930 hypothetical protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1873 Tpau_1874 Tpau_1874 Tpau_1874 1961286 1961927 - two component transcriptional regulator%2C LuxR family KEGG: bcv:Bcav_0335 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1874 Tpau_1875 Tpau_1875 Tpau_1875 1961924 1963042 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: rer:RER_29170 two-component histidine kinase gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1875 Tpau_1876 Tpau_1876 Tpau_1876 1963151 1963708 + conserved hypothetical protein KEGG: nfa:nfa32410 hypothetical protein gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1876 Tpau_1877 Tpau_1877 Tpau_1877 1963856 1964941 + Epoxide hydrolase domain protein PFAM: Epoxide hydrolase domain protein%3B alpha/beta hydrolase fold~KEGG: mem:Memar_1075 epocide hydrolase domain- containing protein gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1877 Tpau_1878 Tpau_1878 Tpau_1878 1965002 1966453 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily KEGG: mab:MAB_3009 RNA polymerase sigma factor~TIGRFAM: RNA polymerase sigma factor RpoD%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 3 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 region 4 domain protein gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1878 Tpau_1879 Tpau_1879 Tpau_1879 1966685 1967425 - ROK family protein PFAM: ROK family protein~KEGG: rop:ROP_68090 polyphosphate glucokinase gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1879 Tpau_1880 Tpau_1880 Tpau_1880 1967538 1968401 + inositol monophosphatase PFAM: inositol monophosphatase~KEGG: rop:ROP_68100 inositol monophosphatase SuhB gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1880 Tpau_1881 Tpau_1881 Tpau_1881 1968413 1969117 - secreted alanine rich protein KEGG: rha:RHA1_ro06826 secreted alanine rich protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1881 Tpau_1882 Tpau_1882 Tpau_1882 1969350 1969649 + conserved hypothetical protein KEGG: mab:MAB_3005c hypothetical protein gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1882 Tpau_1883 Tpau_1883 Tpau_1883 1969682 1970155 - conserved hypothetical protein KEGG: mmi:MMAR_2016 hypothetical protein gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1883 Tpau_1884 Tpau_1884 Tpau_1884 1970197 1970652 + deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~KEGG: rer:RER_28220 deoxyuridine 5'-triphosphate nucleotidohydrolase~PFAM: deoxyUTP pyrophosphatase gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1884 Tpau_1885 Tpau_1885 Tpau_1885 1970711 1971535 + conserved hypothetical protein KEGG: nfa:nfa37520 hypothetical protein gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1885 Tpau_1886 Tpau_1886 Tpau_1886 1971519 1972226 - conserved hypothetical protein KEGG: mav:MAV_3587 hypothetical protein gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1886 Tpau_1887 Tpau_1887 Tpau_1887 1972336 1972983 + integral membrane alanine and leucine rich protein KEGG: msm:MSMEG_2770 integral membrane alanine and leucine rich protein gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1887 Tpau_1888 Tpau_1888 Tpau_1888 1972967 1974145 + deoxyribonuclease/rho motif-related TRAM PFAM: deoxyribonuclease/rho motif-related TRAM~KEGG: mjl:Mjls_2188 deoxyribonuclease gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1888 Tpau_1889 Tpau_1889 Tpau_1889 1974209 1976155 + deoxyxylulose-5-phosphate synthase KEGG: rha:RHA1_ro06843 1-deoxy-D-xylulose-5- phosphate synthase~TIGRFAM: deoxyxylulose-5-phosphate synthase~PFAM: Transketolase central region%3B Transketolase domain protein gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1889 Tpau_1890 Tpau_1890 Tpau_1890 1976160 1977374 - 3'-5' exonuclease KEGG: nfa:nfa37400 putative RNase D~PFAM: 3'-5' exonuclease%3B HRDC domain protein~SMART: 3'-5' exonuclease%3B HRDC domain protein gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1890 Tpau_1891 Tpau_1891 Tpau_1891 1977379 1977999 - conserved hypothetical protein KEGG: mmi:MMAR_2036 hypothetical protein gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1891 Tpau_1892 Tpau_1892 Tpau_1892 1978096 1979169 + uroporphyrinogen decarboxylase TIGRFAM: uroporphyrinogen decarboxylase~KEGG: rop:ROP_68430 uroporphyrinogen decarboxylase~PFAM: Uroporphyrinogen decarboxylase (URO-D) gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1892 Tpau_1893 Tpau_1893 Tpau_1893 1979166 1980431 + protoporphyrinogen oxidase TIGRFAM: protoporphyrinogen oxidase~KEGG: rop:ROP_68440 protoporphyrinogen oxidase~PFAM: amine oxidase gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1893 Tpau_1894 Tpau_1894 Tpau_1894 1980477 1981187 + Chlorite dismutase PFAM: Chlorite dismutase~KEGG: nfa:nfa37360 hypothetical protein gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1894 Tpau_1895 Tpau_1895 Tpau_1895 1981203 1981643 - methionine-R-sulfoxide reductase TIGRFAM: methionine-R-sulfoxide reductase~KEGG: car:cauri_1440 peptide methionine sulfoxide reductase~PFAM: Methionine sulfoxide reductase B gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1895 Tpau_1896 Tpau_1896 Tpau_1896 1981653 1982942 - Protein of unknown function DUF2029 PFAM: Protein of unknown function DUF2029~KEGG: rer:RER_28550 arabinosyltransferase AftC gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1896 Tpau_1897 Tpau_1897 Tpau_1897 1982990 1984552 - TAP domain protein PFAM: TAP domain protein%3B alpha/beta hydrolase fold~KEGG: mab:MAB_2977 hypothetical protein gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1897 Tpau_1898 Tpau_1898 Tpau_1898 1984589 1985212 - bifunctional deaminase-reductase domain protein PFAM: bifunctional deaminase-reductase domain protein~KEGG: mab:MAB_2976 hypothetical protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1898 Tpau_1899 Tpau_1899 Tpau_1899 1985269 1986300 + AFG1-family ATPase PFAM: AFG1-family ATPase~KEGG: rha:RHA1_ro06866 AFG1-like ATPase gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1899 Tpau_1900 Tpau_1900 Tpau_1900 1986484 1986813 - protein of unknown function DUF156 PFAM: protein of unknown function DUF156~KEGG: nfa:nfa8420 hypothetical protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1900 Tpau_1901 Tpau_1901 Tpau_1901 1986810 1989059 - heavy metal translocating P-type ATPase KEGG: nfa:nfa1600 putative cation transporter~TIGRFAM: heavy metal translocating P-type ATPase%3B copper-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase domain protein hydrolase gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1901 Tpau_1902 Tpau_1902 Tpau_1902 1989049 1989207 - hypothetical protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1902 Tpau_1903 Tpau_1903 Tpau_1903 1989407 1989976 + conserved hypothetical protein KEGG: rha:RHA1_ro02077 hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1903 Tpau_1904 Tpau_1904 Tpau_1904 1989982 1990155 + hypothetical protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1904 Tpau_1905 Tpau_1905 Tpau_1905 1990163 1990681 + protein of unknown function DUF1470 PFAM: protein of unknown function DUF1470~KEGG: ami:Amir_3432 protein of unknown function DUF1470 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1905 Tpau_1906 Tpau_1906 Tpau_1906 1990678 1992261 - carboxyl transferase PFAM: carboxyl transferase~KEGG: scl:sce1787 acyl-CoA carboxylase subunit gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1906 Tpau_1907 Tpau_1907 Tpau_1907 1992336 1993223 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) KEGG: ami:Amir_4015 methylenetetrahydrofolate dehydrogenase (NADP(+))~PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1907 Tpau_1908 Tpau_1908 Tpau_1908 1993400 1994263 - membrane protein insertase%2C YidC/Oxa1 family KEGG: nfa:nfa56700 putative inner membrane protein translocase component YidC~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family~PFAM: 60 kDa inner membrane insertion protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1908 Tpau_1909 Tpau_1909 Tpau_1909 1994346 1994666 - hypothetical protein KEGG: rer:RER_47450 hypothetical protein gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1909 Tpau_1910 Tpau_1910 Tpau_1910 1995874 1996311 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: ach:Achl_3375 glyoxalase/bleomycin resistance protein/dioxygenase gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1910 Tpau_1911 Tpau_1911 Tpau_1911 1996360 1996512 + hypothetical protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1911 Tpau_1912 Tpau_1912 Tpau_1912 1996558 1997190 - hypothetical protein KEGG: sma:SAV_4727 hypothetical protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1912 Tpau_1913 Tpau_1913 Tpau_1913 1997187 1998047 - glycosyl transferase family 2 PFAM: glycosyl transferase family 2~KEGG: rer:RER_18450 glycosyltransferase gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1913 Tpau_1914 Tpau_1914 Tpau_1914 1998207 1998824 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_4684 TetR family transcriptional regulator gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1914 Tpau_1915 Tpau_1915 Tpau_1915 1998827 2000071 + Sterol 3-beta-glucosyltransferase KEGG: sen:SACE_6675 UDP-glucose:sterol glucosyltransferase~PFAM: glycosyl transferase family 28 gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1915 Tpau_1916 Tpau_1916 Tpau_1916 2000129 2000842 + conserved hypothetical protein KEGG: bcv:Bcav_3735 hypothetical protein gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1916 Tpau_1917 Tpau_1917 Tpau_1917 2000890 2001339 + Protein of unknown function%2C PGPGW%2C transmembrane PFAM: Protein of unknown function%2C PGPGW%2C transmembrane~KEGG: rha:RHA1_ro06877 hypothetical protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1917 Tpau_1918 Tpau_1918 Tpau_1918 2001339 2001893 + conserved hypothetical protein KEGG: svi:Svir_09690 hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1918 Tpau_1919 Tpau_1919 Tpau_1919 2001954 2003987 + threonyl-tRNA synthetase KEGG: rer:RER_29030 threonyl-tRNA synthetase~TIGRFAM: threonyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein%3B Threonyl/alanyl tRNA synthetase SAD gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1919 Tpau_1920 Tpau_1920 Tpau_1920 2004019 2004567 + histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: rop:ROP_68580 HIT family protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1920 Tpau_1921 Tpau_1921 Tpau_1921 2004567 2005226 + CDP-alcohol phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase~KEGG: rer:RER_29050 phosphatidylinositol synthase gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1921 Tpau_1922 Tpau_1922 Tpau_1922 2005223 2006134 + lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase~KEGG: rer:RER_29060 acyltransferase gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1922 Tpau_1923 Tpau_1923 Tpau_1923 2006134 2007258 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: rer:RER_29070 mannosyltransferase PimA gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1923 Tpau_1924 Tpau_1924 Tpau_1924 2007266 2008288 + NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: rop:ROP_68620 hypothetical protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1924 Tpau_1925 Tpau_1925 Tpau_1925 2008362 2009066 - hypothetical protein gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1925 Tpau_1926 Tpau_1926 Tpau_1926 2009173 2010078 + pyridoxine biosynthesis protein KEGG: rop:ROP_68630 pyridoxal phosphate synthase component Pdx1~TIGRFAM: pyridoxine biosynthesis protein~PFAM: Vitamin B6 biosynthesis protein gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1926 Tpau_1927 Tpau_1927 Tpau_1927 2010201 2011496 + RDD domain containing protein PFAM: RDD domain containing protein~KEGG: bcv:Bcav_3212 FHA domain containing protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1927 Tpau_1928 Tpau_1928 Tpau_1928 2011493 2012305 + protein serine/threonine phosphatase PFAM: Protein phosphatase 2C-like~KEGG: bfa:Bfae_21560 serine/threonine protein phosphatase~SMART: protein phosphatase 2C domain protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1928 Tpau_1929 Tpau_1929 Tpau_1929 2012324 2013148 + Choloyl-CoA hydrolase KEGG: rop:ROP_68660 acyl-CoA thioesterase~PFAM: acyl-CoA thioesterase gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1929 Tpau_1930 Tpau_1930 Tpau_1930 2013193 2013798 + SNO glutamine amidotransferase PFAM: SNO glutamine amidotransferase%3B CobB/CobQ domain protein glutamine amidotransferase~KEGG: rer:RER_29150 pyridoxal phosphate synthase component Pdx2 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1930 Tpau_1931 Tpau_1931 Tpau_1931 2013888 2015282 + acyltransferase%2C WS/DGAT/MGAT KEGG: rha:RHA1_ro01601 hypothetical protein~TIGRFAM: acyltransferase%2C WS/DGAT/MGAT~PFAM: protein of unknown function UPF0089 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1931 Tpau_1932 Tpau_1932 Tpau_1932 2015328 2016083 + protein of unknown function DUF28 PFAM: protein of unknown function DUF28~KEGG: rop:ROP_68700 hypothetical protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1932 Tpau_1933 Tpau_1933 Tpau_1933 2016156 2017859 + VanW family protein PFAM: VanW family protein~KEGG: nfa:nfa54560 hypothetical protein gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1933 Tpau_1934 Tpau_1934 Tpau_1934 2017941 2018588 + crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC~KEGG: nfa:nfa36970 Holliday junction resolvase~PFAM: Crossover junction endodeoxyribonuclease RuvC gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1934 Tpau_1935 Tpau_1935 Tpau_1935 2018585 2019184 + Holliday junction DNA helicase RuvA KEGG: rop:ROP_68720 Holliday junction DNA helicase RuvA~TIGRFAM: Holliday junction DNA helicase RuvA~PFAM: DNA recombination protein RuvA domain I%3B RuvA domain protein gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1935 Tpau_1936 Tpau_1936 Tpau_1936 2019186 2020280 + Holliday junction DNA helicase RuvB TIGRFAM: Holliday junction DNA helicase RuvB~PFAM: AAA ATPase central domain protein%3B Holliday junction DNA helicase RuvB domain%3B ATPase associated with various cellular activities AAA_5~KEGG: rha:RHA1_ro06894 Holliday junction DNA helicase RuvB~SMART: AAA ATPase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1936 Tpau_1937 Tpau_1937 Tpau_1937 2020324 2021250 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: fre:Franean1_0246 short chain dehydrogenase gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1937 Tpau_1938 Tpau_1938 Tpau_1938 2021251 2023158 - glycosyl transferase family 39 PFAM: glycosyl transferase family 39~KEGG: rha:RHA1_ro04745 hypothetical protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1938 Tpau_1939 Tpau_1939 Tpau_1939 2023155 2024402 - glycosyl transferase family 2 PFAM: glycosyl transferase family 2%3B GtrA family protein~KEGG: rop:ROP_48360 putative glycosyltransferase gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1939 Tpau_1940 Tpau_1940 Tpau_1940 2024531 2026651 + DEAD/DEAH box helicase domain protein KEGG: mlu:Mlut_03530 ATP-dependent DNA helicase RecQ~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1940 Tpau_1941 Tpau_1941 Tpau_1941 2026788 2027129 + preprotein translocase%2C YajC subunit KEGG: mjl:Mjls_2314 preprotein translocase subunit YajC~TIGRFAM: preprotein translocase%2C YajC subunit~PFAM: YajC family protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1941 Tpau_1942 Tpau_1942 Tpau_1942 2027200 2028816 + protein-export membrane protein SecD KEGG: rer:RER_29270 protein-export membrane protein SecD~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family~PFAM: SecD/SecF/SecDF export membrane protein gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1942 Tpau_1943 Tpau_1943 Tpau_1943 2028813 2029937 + protein-export membrane protein SecF KEGG: rer:RER_29280 protein-export membrane protein SecF~TIGRFAM: protein-export membrane protein SecF%3B protein-export membrane protein%2C SecD/SecF family~PFAM: SecD/SecF/SecDF export membrane protein gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1943 Tpau_1944 Tpau_1944 Tpau_1944 2029930 2030490 + Adenine phosphoribosyltransferase KEGG: mab:MAB_2877c adenine phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1944 Tpau_1945 Tpau_1945 Tpau_1945 2030530 2032869 + (p)ppGpp synthetase I%2C SpoT/RelA SMART: metal-dependent phosphohydrolase HD region~TIGRFAM: RelA/SpoT family protein~KEGG: rop:ROP_68790 GTP pyrophosphokinase/guanosine- 3'%2C5'-bis (diphosphate) 3-pyrophosphohydrolase~PFAM: RelA/SpoT domain protein%3B TGS domain protein%3B amino acid-binding ACT domain protein%3B metal-dependent phosphohydrolase HD sub domain gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1945 Tpau_1946 Tpau_1946 Tpau_1946 2033042 2033234 + pseudogene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1946 Tpau_1947 Tpau_1947 Tpau_1947 2033291 2034664 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1947 Tpau_1948 Tpau_1948 Tpau_1948 2034749 2035822 - putative peptidyl-prolyl cis-trans isomerase KEGG: sen:SACE_2030 putative peptidyl-prolyl cis- trans isomerase gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1948 Tpau_1949 Tpau_1949 Tpau_1949 2035979 2036716 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: mab:MAB_2873c hypothetical protein gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1949 Tpau_1950 Tpau_1950 Tpau_1950 2036713 2038038 + histidyl-tRNA synthetase TIGRFAM: histidyl-tRNA synthetase~KEGG: nfa:nfa36640 histidyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1950 Tpau_1951 Tpau_1951 Tpau_1951 2038043 2038735 + conserved hypothetical protein KEGG: rha:RHA1_ro06905 hypothetical protein gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1951 Tpau_1952 Tpau_1952 Tpau_1952 2038793 2039827 + Radical SAM domain protein PFAM: Radical SAM domain protein~KEGG: rer:RER_29600 hypothetical protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1952 Tpau_1953 Tpau_1953 Tpau_1953 2039860 2040240 + transcriptional regulator%2C ArsR family KEGG: scl:sce6059 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1953 Tpau_1954 Tpau_1954 Tpau_1954 2040237 2040731 + Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein~KEGG: scl:sce6060 hypothetical protein gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1954 Tpau_1955 Tpau_1955 Tpau_1955 2040746 2041924 + cobalamin synthesis protein P47K PFAM: cobalamin synthesis protein P47K%3B cobalamin synthesis CobW domain protein~KEGG: mva:Mvan_5321 cobalamin synthesis protein%2C P47K gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1955 Tpau_1956 Tpau_1956 Tpau_1956 2041918 2043480 - FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: sen:SACE_3958 glycerol-3-phosphate dehydrogenase gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1956 Tpau_1957 Tpau_1957 Tpau_1957 2043477 2044094 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_3959 TetR family transcriptional regulator gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1957 Tpau_1958 Tpau_1958 Tpau_1958 2044110 2045705 + Alkylglycerone-phosphate synthase KEGG: sen:SACE_3960 alkyl-dihydroxyacetonephosphate synthase%2Cputative~PFAM: FAD linked oxidase domain protein gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1958 Tpau_1959 Tpau_1959 Tpau_1959 2045702 2046586 + diacylglycerol kinase catalytic region PFAM: diacylglycerol kinase catalytic region~KEGG: sen:SACE_3961 secreted protein gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1959 Tpau_1960 Tpau_1960 Tpau_1960 2046591 2048219 - protein of unknown function DUF885 PFAM: protein of unknown function DUF885~KEGG: mva:Mvan_2607 hypothetical protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1960 Tpau_1961 Tpau_1961 Tpau_1961 2048275 2048769 - hypothetical protein gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1961 Tpau_1962 Tpau_1962 Tpau_1962 2048774 2049676 - protein of unknown function zinc metallopeptidase putative PFAM: protein of unknown function zinc metallopeptidase putative~KEGG: msm:MSMEG_3000 metallopeptidase%2C zinc binding gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1962 Tpau_1963 Tpau_1963 Tpau_1963 2049773 2051578 + aspartyl-tRNA synthetase KEGG: nfa:nfa36490 aspartyl-tRNA synthetase~TIGRFAM: aspartyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B GAD domain protein%3B nucleic acid binding OB-fold tRNA/helicase- type gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1963 Tpau_1964 Tpau_1964 Tpau_1964 2051602 2052534 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: rop:ROP_69110 hypothetical membrane protein gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1964 Tpau_1965 Tpau_1965 Tpau_1965 2052531 2054987 + protein of unknown function DUF404 PFAM: protein of unknown function DUF404%3B protein of unknown function DUF403%3B protein of unknown function DUF407~KEGG: mbt:JTY_2584 hypothetical alanine and leucine rich protein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1965 Tpau_1966 Tpau_1966 Tpau_1966 2054978 2055892 + transglutaminase domain protein KEGG: rha:RHA1_ro07132 transglutaminase-like enzyme~PFAM: transglutaminase domain protein%3B transglutaminase domain protein~SMART: transglutaminase domain protein gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1966 Tpau_1967 Tpau_1967 Tpau_1967 2055832 2056494 - ABC transporter related protein KEGG: mgi:Mflv_0115 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1967 Tpau_1968 Tpau_1968 Tpau_1968 2056491 2057222 - ABC transporter related protein KEGG: mgi:Mflv_0116 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1968 Tpau_1969 Tpau_1969 Tpau_1969 2057219 2058019 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: mgi:Mflv_0117 binding-protein-dependent transport systems inner membrane component gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1969 Tpau_1970 Tpau_1970 Tpau_1970 2058016 2059035 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: mgi:Mflv_0118 binding-protein-dependent transport systems inner membrane component gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1970 Tpau_1971 Tpau_1971 Tpau_1971 2059008 2060585 - extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: mgi:Mflv_0119 extracellular solute-binding protein gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1971 Tpau_1972 Tpau_1972 Tpau_1972 2060640 2060948 + transcriptional regulator%2C ArsR family KEGG: kse:Ksed_03940 transcriptional regulator%2C ArsR family~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1972 Tpau_1973 Tpau_1973 Tpau_1973 2061019 2062125 + conserved hypothetical protein KEGG: rop:ROP_69140 hypothetical protein gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1973 Tpau_1974 Tpau_1974 Tpau_1974 2062122 2063492 + AAA ATPase central domain protein KEGG: rop:ROP_69150 putative AAA family ATPase~PFAM: AAA ATPase central domain protein%3B magnesium chelatase ChlI subunit%3B ATPase associated with various cellular activities AAA_5~SMART: AAA ATPase gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1974 Tpau_1975 Tpau_1975 Tpau_1975 2063546 2066218 + alanyl-tRNA synthetase TIGRFAM: alanyl-tRNA synthetase~KEGG: rha:RHA1_ro07135 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc-like%3B phosphoesterase DHHA1%3B Threonyl/alanyl tRNA synthetase SAD gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1975 Tpau_1976 Tpau_1976 Tpau_1976 2066221 2066706 + Holliday junction resolvase YqgF KEGG: rop:ROP_69170 putative Holliday junction resolvase~PFAM: Holliday junction resolvase YqgF~SMART: Resolvase RNase H domain protein fold gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1976 Tpau_1977 Tpau_1977 Tpau_1977 2066703 2067959 + aminodeoxychorismate lyase PFAM: aminodeoxychorismate lyase~KEGG: mgi:Mflv_3761 aminodeoxychorismate lyase gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1977 Tpau_1978 Tpau_1978 Tpau_1978 2067956 2068783 + shikimate-5-dehydrogenase KEGG: rop:ROP_69190 shikimate dehydrogenase~TIGRFAM: shikimate-5-dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding domain protein%3B Shikimate/quinate 5-dehydrogenase gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1978 Tpau_1979 Tpau_1979 Tpau_1979 2068780 2069190 + thioesterase superfamily protein KEGG: mkm:Mkms_2777 thioesterase superfamily protein gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1979 Tpau_1980 Tpau_1980 Tpau_1980 2069203 2069631 + peptidase A24A prepilin type IV PFAM: peptidase A24A prepilin type IV~KEGG: mva:Mvan_2644 peptidase A24A%2C prepilin type IV gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1980 Tpau_1981 Tpau_1981 Tpau_1981 2069677 2070774 + fmnh2-utilizing oxygenase KEGG: msm:MSMEG_2177 fmnh2-utilizing oxygenase gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1981 Tpau_1982 Tpau_1982 Tpau_1982 2070771 2071811 + luciferase family oxidoreductase%2C group 1 KEGG: mav:MAV_2049 hypothetical protein~TIGRFAM: luciferase family oxidoreductase%2C group 1~PFAM: Luciferase-like%2C subgroup gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1982 Tpau_1983 Tpau_1983 Tpau_1983 2071796 2073142 + fmnh2-utilizing oxygenase KEGG: mav:MAV_2048 fmnh2-utilizing oxygenase gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1983 Tpau_1984 Tpau_1984 Tpau_1984 2073165 2074823 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: afo:Afer_1027 AMP-dependent synthetase and ligase gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1984 Tpau_1985 Tpau_1985 Tpau_1985 2074833 2075828 - Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: fal:FRAAL3568 monooxygenase (partial match) gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1985 Tpau_1986 Tpau_1986 Tpau_1986 2075828 2076766 - extracellular solute-binding protein family 3 KEGG: cai:Caci_3769 extracellular solute-binding protein family 3~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1986 Tpau_1987 Tpau_1987 Tpau_1987 2076814 2077584 - ABC transporter related protein KEGG: cai:Caci_3799 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1987 Tpau_1988 Tpau_1988 Tpau_1988 2077581 2078531 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: cai:Caci_3798 polar amino acid ABC transporter%2C inner membrane subunit~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1988 Tpau_1989 Tpau_1989 Tpau_1989 2078574 2079263 - two component transcriptional regulator%2C LuxR family KEGG: sco:SCO4363 two component system response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: regulatory protein LuxR%3B response regulator receiver gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1989 Tpau_1990 Tpau_1990 Tpau_1990 2079260 2080354 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: sco:SCO4362 two component system sensor kinase gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1990 Tpau_1991 Tpau_1991 Tpau_1991 2080437 2081756 + threonine dehydratase KEGG: nfa:nfa18070 threonine dehydratase~TIGRFAM: threonine dehydratase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit%3B Threonine dehydratase domain protein gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1991 Tpau_1992 Tpau_1992 Tpau_1992 2081757 2082257 - hypothetical protein KEGG: rsa:RSal33209_3468 hypothetical protein gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1992 Tpau_1993 Tpau_1993 Tpau_1993 2082338 2082772 + PPOX class putative F420-dependent enzyme KEGG: mpa:MAP2229 hypothetical protein~TIGRFAM: PPOX class probable F420-dependent enzyme~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1993 Tpau_1994 Tpau_1994 Tpau_1994 2082784 2083809 - luciferase family oxidoreductase%2C group 1 KEGG: sen:SACE_1310 luciferase-like monooxygenase~TIGRFAM: luciferase family oxidoreductase%2C group 1~PFAM: Luciferase-like%2C subgroup gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1994 Tpau_1995 Tpau_1995 Tpau_1995 2083865 2084905 - putative F420-dependent oxidoreductase KEGG: nfa:nfa34240 putative oxidoreductase~TIGRFAM: putative F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1995 Tpau_1996 Tpau_1996 Tpau_1996 2084997 2085680 - hypothetical protein gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1996 Tpau_1997 Tpau_1997 Tpau_1997 2085800 2086318 - hypothetical protein gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1997 Tpau_1998 Tpau_1998 Tpau_1998 2086577 2087848 + adenosylmethionine-8-amino-7-oxononanoateaminotr ansferase KEGG: nfa:nfa18180 adenosylmethionine--8-amino-7- oxononanoate transaminase~TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase~PFAM: aminotransferase class-III gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1998 Tpau_1999 Tpau_1999 Tpau_1999 2087853 2089004 + 8-amino-7-oxononanoate synthase KEGG: rop:ROP_07820 8-amino-7-oxononanoate synthase~PFAM: aminotransferase class I and II%3B aminotransferase class-III%3B aromatic amino acid beta- eliminating lyase/threonine aldolase gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_1999 Tpau_2000 Tpau_2000 Tpau_2000 2089001 2089711 + dethiobiotin synthase KEGG: rha:RHA1_ro01053 dithiobiotin synthetase~TIGRFAM: dethiobiotin synthase gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2000 Tpau_2001 Tpau_2001 Tpau_2001 2089689 2090825 - phosphoesterase PA-phosphatase related protein KEGG: cmi:CMM_2657 putative phosphatase~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2001 Tpau_2002 Tpau_2002 Tpau_2002 2091005 2092012 + biotin synthase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: biotin synthase~KEGG: nfa:nfa18320 biotin synthase~PFAM: biotin and thiamin synthesis associated%3B Radical SAM domain protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2002 Tpau_2003 Tpau_2003 Tpau_2003 2092009 2092236 + conserved hypothetical protein KEGG: mjl:Mjls_3089 hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2003 Tpau_2004 Tpau_2004 Tpau_2004 2092273 2092821 + hypothetical protein KEGG: msm:MSMEG_3196 hypothetical protein gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2004 Tpau_2005 Tpau_2005 Tpau_2005 2092857 2093513 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase~KEGG: cef:CE1759 putative oxidoreductase gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2005 Tpau_2006 Tpau_2006 Tpau_2006 2093516 2094649 - Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: ckp:ckrop_1424 putative monooxygenase gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2006 Tpau_2007 Tpau_2007 Tpau_2007 2094736 2095707 - Patatin PFAM: Patatin~KEGG: mlb:MLBr_01423 hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2007 Tpau_2008 Tpau_2008 Tpau_2008 2095765 2096478 - conserved hypothetical protein KEGG: ami:Amir_1171 hypothetical protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2008 Tpau_2009 Tpau_2009 Tpau_2009 2096530 2097234 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: mab:MAB_2675 hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2009 Tpau_2010 Tpau_2010 Tpau_2010 2097308 2098357 + quinolinate synthetase complex%2C A subunit KEGG: mva:Mvan_2798 quinolinate synthetase~TIGRFAM: quinolinate synthetase complex%2C A subunit~PFAM: Quinolinate synthetase A gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2010 Tpau_2011 Tpau_2011 Tpau_2011 2098354 2099802 + L-aspartate oxidase KEGG: msm:MSMEG_3200 L-aspartate oxidase~TIGRFAM: L-aspartate oxidase~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2011 Tpau_2012 Tpau_2012 Tpau_2012 2099799 2100662 + nicotinate-nucleotide pyrophosphorylase TIGRFAM: nicotinate-nucleotide pyrophosphorylase~KEGG: nfa:nfa18390 nicotinate-nucleotide pyrophosphorylase~PFAM: Quinolinate phosphoribosyl transferase gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2012 Tpau_2013 Tpau_2013 Tpau_2013 2100619 2101092 - DoxX family protein PFAM: DoxX family protein~KEGG: mab:MAB_1882c hypothetical protein gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2013 Tpau_2014 Tpau_2014 Tpau_2014 2101089 2101556 - Electron transfer DM13 PFAM: Electron transfer DM13~KEGG: mab:MAB_1883c hypothetical protein gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2014 Tpau_2015 Tpau_2015 Tpau_2015 2101721 2102407 + two component transcriptional regulator%2C winged helix family KEGG: cmi:CMM_2335 putative two-component system response regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2015 Tpau_2016 Tpau_2016 Tpau_2016 2102404 2103546 + integral membrane sensor signal transduction histidine kinase KEGG: sco:SCO3740 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2016 Tpau_2017 Tpau_2017 Tpau_2017 2103547 2104245 - protein of unknown function DUF1345 PFAM: protein of unknown function DUF1345~KEGG: art:Arth_4121 hypothetical protein gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2017 Tpau_2018 Tpau_2018 Tpau_2018 2104344 2105390 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES domain protein%3B Alcohol dehydrogenase zinc-binding domain protein~KEGG: mmi:MMAR_1649 NADP-dependent alcohol dehydrogenase Adh gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2018 Tpau_2019 Tpau_2019 Tpau_2019 2105446 2105850 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: cai:Caci_3171 glyoxalase/bleomycin resistance protein/dioxygenase gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2019 Tpau_2020 Tpau_2020 Tpau_2020 2105862 2106293 - transcriptional regulator%2C AraC family KEGG: mva:Mvan_3008 helix-turn-helix domain- containing protein~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2020 Tpau_2021 Tpau_2021 Tpau_2021 2106295 2107008 - phospholipid/glycerol acyltransferase KEGG: nfa:nfa17120 putative 1-acylglycerol-3- phosphate O-acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2021 Tpau_2022 Tpau_2022 Tpau_2022 2107059 2107724 + isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: mab:MAB_1852c isochorismatase hydrolase gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2022 Tpau_2023 Tpau_2023 Tpau_2023 2107734 2109080 + histidinol dehydrogenase TIGRFAM: histidinol dehydrogenase~KEGG: rer:RER_34520 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2023 Tpau_2024 Tpau_2024 Tpau_2024 2109077 2110201 + histidinol-phosphate aminotransferase KEGG: nfa:nfa18460 histidinol-phosphate aminotransferase~TIGRFAM: histidinol-phosphate aminotransferase~PFAM: aminotransferase class I and II gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2024 Tpau_2025 Tpau_2025 Tpau_2025 2110211 2110825 + Imidazoleglycerol-phosphate dehydratase KEGG: rer:RER_34500 imidazoleglycerol-phosphate dehydratase~PFAM: imidazoleglycerol-phosphate dehydratase gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2025 Tpau_2026 Tpau_2026 Tpau_2026 2110849 2112198 - allantoinase KEGG: mgi:Mflv_3169 allantoinase~TIGRFAM: allantoinase~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2026 Tpau_2027 Tpau_2027 Tpau_2027 2112447 2113994 + permease for cytosine/purines uracil thiamine allantoin PFAM: permease for cytosine/purines uracil thiamine allantoin~KEGG: mgi:Mflv_3170 permease for cytosine/purines%2C uracil%2C thiamine%2C allantoin gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2027 Tpau_2028 Tpau_2028 Tpau_2028 2114007 2114729 + Asp/Glu/hydantoin racemase PFAM: Asp/Glu/hydantoin racemase~KEGG: mgi:Mflv_3171 Asp/Glu racemase gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2028 Tpau_2029 Tpau_2029 Tpau_2029 2114795 2116693 + peptidase M61 domain protein PFAM: peptidase M61 domain protein~KEGG: sml:Smlt1343 hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2029 Tpau_2030 Tpau_2030 Tpau_2030 2116711 2117526 - allantoin catabolism protein KEGG: mgi:Mflv_3172 hypothetical protein~TIGRFAM: allantoin catabolism protein~PFAM: Cupin 2 conserved barrel domain protein%3B protein of unknown function DUF861 cupin_3 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2030 Tpau_2031 Tpau_2031 Tpau_2031 2117519 2118802 - conserved hypothetical protein KEGG: mgi:Mflv_3173 hypothetical protein gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2031 Tpau_2032 Tpau_2032 Tpau_2032 2118989 2119753 + transcriptional regulator%2C IclR family KEGG: mgi:Mflv_3174 regulatory protein%2C IclR~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2032 Tpau_2033 Tpau_2033 Tpau_2033 2119776 2120648 - transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: svi:Svir_23580 transcriptional regulator gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2033 Tpau_2034 Tpau_2034 Tpau_2034 2120753 2121553 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rer:RER_17500 enoyl-CoA hydratase gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2034 Tpau_2035 Tpau_2035 Tpau_2035 2121550 2123733 - CoA-binding domain protein PFAM: CoA-binding domain protein~KEGG: tmz:Tmz1t_0645 CoA-binding domain protein gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2035 Tpau_2036 Tpau_2036 Tpau_2036 2123736 2124509 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: eba:ebA2191 crotonase gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2036 Tpau_2037 Tpau_2037 Tpau_2037 2124690 2125319 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit KEGG: nfa:nfa18480 imidazole glycerol phosphate synthase subunit HisH~TIGRFAM: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~PFAM: glutamine amidotransferase class-I gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2037 Tpau_2038 Tpau_2038 Tpau_2038 2125316 2125555 + hypothetical protein KEGG: rer:RER_34460 hypothetical protein gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2038 Tpau_2039 Tpau_2039 Tpau_2039 2125565 2126299 + bifunctional HisA/TrpF protein TIGRFAM: bifunctional HisA/TrpF protein~KEGG: rop:ROP_07500 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino) methylideneamino] imidazole-4- carboxamide isomerase~PFAM: histidine biosynthesis protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2039 Tpau_2040 Tpau_2040 Tpau_2040 2126299 2127162 + inositol monophosphatase PFAM: inositol monophosphatase~KEGG: rop:ROP_07490 putative inositol monophosphatase ImpA gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2040 Tpau_2041 Tpau_2041 Tpau_2041 2127200 2127976 + imidazoleglycerol phosphate synthase%2C cyclase subunit KEGG: rop:ROP_07480 imidazole glycerol phosphate synthase subunit HisF~TIGRFAM: imidazoleglycerol phosphate synthase%2C cyclase subunit~PFAM: histidine biosynthesis protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2041 Tpau_2042 Tpau_2042 Tpau_2042 2127973 2128332 + Phosphoribosyl-AMP cyclohydrolase KEGG: cur:cur_1168 hypothetical protein~PFAM: phosphoribosyl-AMP cyclohydrolase gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2042 Tpau_2043 Tpau_2043 Tpau_2043 2128336 2128794 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein~KEGG: nfa:nfa18570 hypothetical protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2043 Tpau_2044 Tpau_2044 Tpau_2044 2128832 2130397 + anthranilate synthase component I TIGRFAM: anthranilate synthase component I~KEGG: mab:MAB_2647c anthranilate synthase component I~PFAM: Chorismate binding-like%3B Anthranilate synthase component I domain protein gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2044 Tpau_2045 Tpau_2045 Tpau_2045 2130394 2131029 + trp region conserved hypothetical protein KEGG: rop:ROP_07410 hypothetical membrane protein~TIGRFAM: trp region conserved hypothetical protein~PFAM: Trp biosynthesis associated%2C transmembrane protein%2C Oprn/Chp gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2045 Tpau_2046 Tpau_2046 Tpau_2046 2131071 2131889 + Indole-3-glycerol-phosphate synthase KEGG: mab:MAB_2645c indole-3-glycerol-phosphate synthase~PFAM: Indole-3-glycerol phosphate synthase gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2046 Tpau_2047 Tpau_2047 Tpau_2047 2131890 2132789 - ATPase BadF/BadG/BcrA/BcrD type PFAM: ATPase BadF/BadG/BcrA/BcrD type~KEGG: mab:MAB_0364c ATPase%2C BadF/BadG/BcrA/BcrD type gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2047 Tpau_2048 Tpau_2048 Tpau_2048 2132786 2134222 - sugar transporter KEGG: mul:MUL_1444 sugar-transport integral membrane protein SugI~TIGRFAM: sugar transporter~PFAM: General substrate transporter%3B major facilitator superfamily MFS_1 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2048 Tpau_2049 Tpau_2049 Tpau_2049 2134321 2135058 + transcriptional regulator%2C GntR family KEGG: aau:AAur_2055 GntR family transcriptional regulator~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2049 Tpau_2050 Tpau_2050 Tpau_2050 2135065 2136060 - extracellular solute-binding protein family 3 KEGG: sgr:SGR_5758 putative ABC transporter substrate-binding protein~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2050 Tpau_2051 Tpau_2051 Tpau_2051 2136057 2136845 - ABC transporter related protein KEGG: sgr:SGR_5757 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2051 Tpau_2052 Tpau_2052 Tpau_2052 2136842 2137765 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: kra:Krad_0928 polar amino acid ABC transporter%2C inner membrane subunit~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2052 Tpau_2053 Tpau_2053 Tpau_2053 2137762 2138484 - FR47 domain protein PFAM: FR47 domain protein%3B GCN5-related N- acetyltransferase~KEGG: rha:RHA1_ro01753 acetyltransferase gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2053 Tpau_2054 Tpau_2054 Tpau_2054 2138555 2139886 + tryptophan synthase%2C beta subunit KEGG: nfa:nfa18610 tryptophan synthase subunit beta~TIGRFAM: tryptophan synthase%2C beta subunit~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2054 Tpau_2055 Tpau_2055 Tpau_2055 2139883 2140665 + tryptophan synthase%2C alpha subunit KEGG: nfa:nfa18620 tryptophan synthase subunit alpha~TIGRFAM: tryptophan synthase%2C alpha subunit~PFAM: tryptophan synthase alpha chain gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2055 Tpau_2056 Tpau_2056 Tpau_2056 2140703 2141884 + diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: mab:MAB_0124 hypothetical protein~SMART: GGDEF domain containing protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2056 Tpau_2057 Tpau_2057 Tpau_2057 2141955 2143091 + diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: mab:MAB_1867 hypothetical protein~SMART: GGDEF domain containing protein gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2057 Tpau_2058 Tpau_2058 Tpau_2058 2143234 2144430 + diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: mab:MAB_0124 hypothetical protein~SMART: GGDEF domain containing protein gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2058 Tpau_2059 Tpau_2059 Tpau_2059 2144494 2146122 + ABC transporter related protein KEGG: rha:RHA1_ro07204 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2059 Tpau_2060 Tpau_2060 Tpau_2060 2146135 2146929 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: mva:Mvan_0398 short-chain dehydrogenase/reductase SDR gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2060 Tpau_2061 Tpau_2061 Tpau_2061 2146954 2147538 - peptidase C60 sortase A and B PFAM: peptidase C60 sortase A and B~KEGG: rer:RER_32360 hypothetical protein gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2061 Tpau_2062 Tpau_2062 Tpau_2062 2147540 2148742 - hypothetical protein KEGG: similar to CG16995 CG16995-PA gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2062 Tpau_2063 Tpau_2063 Tpau_2063 2148980 2149747 - LmbE family protein PFAM: LmbE family protein~KEGG: mav:MAV_3781 GlcNAc-PI de-N-acetylase family protein gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2063 Tpau_2064 Tpau_2064 Tpau_2064 2149777 2153139 - conserved hypothetical protein KEGG: sml:Smlt4656 hypothetical protein gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2064 Tpau_2065 Tpau_2065 Tpau_2065 2153136 2153897 - conserved hypothetical protein KEGG: msm:MSMEG_0369 hypothetical protein gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2065 Tpau_2066 Tpau_2066 Tpau_2066 2153899 2155407 - hypothetical protein KEGG: mjl:Mjls_0871 hypothetical protein gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2066 Tpau_2067 Tpau_2067 Tpau_2067 2155517 2156554 + glycerophosphoryl diester phosphodiesterase PFAM: glycerophosphoryl diester phosphodiesterase~KEGG: sen:SACE_6355 glycerophosphoryl diester phosphodiesterase gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2067 Tpau_2068 Tpau_2068 Tpau_2068 2156634 2157149 + conserved hypothetical protein KEGG: mgi:Mflv_1048 hypothetical protein gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2068 Tpau_2069 Tpau_2069 Tpau_2069 2157238 2157999 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: rha:RHA1_ro05676 hypothetical protein gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2069 Tpau_2070 Tpau_2070 Tpau_2070 2158134 2159171 + extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: mva:Mvan_3093 extracellular solute-binding protein gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2070 Tpau_2071 Tpau_2071 Tpau_2071 2159161 2160681 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: mva:Mvan_3092 binding-protein-dependent transport systems inner membrane component gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2071 Tpau_2072 Tpau_2072 Tpau_2072 2160678 2161703 + ABC transporter related protein KEGG: rxy:Rxyl_1173 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2072 Tpau_2073 Tpau_2073 Tpau_2073 2161723 2162580 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mgi:Mflv_4018 glyoxalase/bleomycin resistance protein/dioxygenase gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2073 Tpau_2074 Tpau_2074 Tpau_2074 2162588 2163157 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa34840 putative transcriptional regulator gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2074 Tpau_2075 Tpau_2075 Tpau_2075 2163237 2166053 - aconitate hydratase 1 KEGG: rop:ROP_69950 aconitase~TIGRFAM: aconitate hydratase 1~PFAM: aconitate hydratase domain protein gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2075 Tpau_2076 Tpau_2076 Tpau_2076 2166222 2166827 + conserved hypothetical protein KEGG: rop:ROP_69960 hypothetical membrane protein gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2076 Tpau_2077 Tpau_2077 Tpau_2077 2167063 2168559 + NLP/P60 protein PFAM: NLP/P60 protein~KEGG: rer:RER_30700 Rpf-interacting protein gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2077 Tpau_2078 Tpau_2078 Tpau_2078 2168684 2169772 + ATPase associated with various cellular activities AAA_3 PFAM: ATPase associated with various cellular activities AAA_3%3B ATPase associated with various cellular activities AAA_5~KEGG: nfa:nfa34800 putative regulator gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2078 Tpau_2079 Tpau_2079 Tpau_2079 2169776 2170708 + conserved hypothetical protein KEGG: nfa:nfa34790 hypothetical protein gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2079 Tpau_2080 Tpau_2080 Tpau_2080 2170709 2171692 + von Willebrand factor type A KEGG: rer:RER_30730 hypothetical protein~PFAM: von Willebrand factor type A~SMART: von Willebrand factor type A gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2080 Tpau_2081 Tpau_2081 Tpau_2081 2171741 2172490 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: rop:ROP_70010 3-oxoacyl-[acyl-carrier- protein] reductase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2081 Tpau_2082 Tpau_2082 Tpau_2082 2172543 2173382 + Enoyl-(acyl-carrier-protein) reductase (NADH) KEGG: nfa:nfa34760 enoyl-(acyl carrier protein) reductase gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2082 Tpau_2083 Tpau_2083 Tpau_2083 2173386 2174402 + ferrochelatase TIGRFAM: ferrochelatase~KEGG: rop:ROP_70030 ferrochelatase~PFAM: ferrochelatase gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2083 Tpau_2084 Tpau_2084 Tpau_2084 2174452 2175237 - conserved hypothetical protein KEGG: rha:RHA1_ro07216 hypothetical protein gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2084 Tpau_2085 Tpau_2085 Tpau_2085 2175371 2176192 + conserved hypothetical protein KEGG: nfa:nfa34730 hypothetical protein gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2085 Tpau_2086 Tpau_2086 Tpau_2086 2176173 2177099 - hypothetical protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2086 Tpau_2087 Tpau_2087 Tpau_2087 2177196 2177816 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_3473 TetR family transcriptional regulator gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2087 Tpau_2088 Tpau_2088 Tpau_2088 2177886 2178791 + conserved hypothetical protein KEGG: rha:RHA1_ro05227 hypothetical protein gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2088 Tpau_2089 Tpau_2089 Tpau_2089 2178788 2179555 + hypothetical protein KEGG: mbt:JTY_0967 putative monooxygenase gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2089 Tpau_2090 Tpau_2090 Tpau_2090 2179652 2180083 + protein of unknown function DUF107 PFAM: protein of unknown function DUF107~KEGG: rop:ROP_70060 hypothetical membrane protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2090 Tpau_2091 Tpau_2091 Tpau_2091 2180115 2181320 + band 7 protein KEGG: rop:ROP_70070 stomatin family protein~PFAM: band 7 protein~SMART: band 7 protein gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2091 Tpau_2092 Tpau_2092 Tpau_2092 2181322 2181900 - conserved hypothetical protein KEGG: rha:RHA1_ro07229 hypothetical protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2092 Tpau_2093 Tpau_2093 Tpau_2093 2181897 2182496 - conserved hypothetical protein KEGG: rop:ROP_70140 hypothetical protein gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2093 Tpau_2094 Tpau_2094 Tpau_2094 2182525 2183712 - C4-dicarboxylate transporter/malic acid transport protein PFAM: C4-dicarboxylate transporter/malic acid transport protein~KEGG: art:Arth_4391 C4-dicarboxylate transporter/malic acid transport protein gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2094 Tpau_2095 Tpau_2095 Tpau_2095 2183784 2184713 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: bcv:Bcav_0524 transcriptional regulator%2C LysR family gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2095 Tpau_2096 Tpau_2096 Tpau_2096 2184658 2185452 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: mab:MAB_1504 ABC transporter permease gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2096 Tpau_2097 Tpau_2097 Tpau_2097 2185452 2186321 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: sgr:SGR_4695 putative ABC transporter permease protein gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2097 Tpau_2098 Tpau_2098 Tpau_2098 2186318 2187475 - ABC transporter related protein KEGG: rer:RER_25610 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2098 Tpau_2099 Tpau_2099 Tpau_2099 2187472 2188503 - extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: rop:ROP_66360 putative ABC transporter substrate-binding protein gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2099 Tpau_2100 Tpau_2100 Tpau_2100 2188574 2189677 - FAD dependent oxidoreductase TIGR03364 KEGG: aau:AAur_1206 FAD dependent oxidoreductase domain-containing protein~TIGRFAM: FAD dependent oxidoreductase TIGR03364~PFAM: FAD dependent oxidoreductase gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2100 Tpau_2101 Tpau_2101 Tpau_2101 2189832 2190596 + transcriptional regulator%2C GntR family KEGG: aau:AAur_1207 GntR family transcriptional regulator~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2101 Tpau_2102 Tpau_2102 Tpau_2102 2190593 2191294 + Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase domain protein hydrolase~KEGG: aau:AAur_1208 putative phosphonoacetaldehyde hydrolase gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2102 Tpau_2103 Tpau_2103 Tpau_2103 2191313 2192002 - SNARE associated Golgi protein-related protein PFAM: SNARE associated Golgi protein~KEGG: rer:RER_30870 hypothetical protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2103 Tpau_2104 Tpau_2104 Tpau_2104 2192162 2193955 + Methylmalonyl-CoA mutase KEGG: nfa:nfa34670 putative methylmalonyl-CoA mutase beta subunit~PFAM: methylmalonyl-CoA mutase gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2104 Tpau_2105 Tpau_2105 Tpau_2105 2193955 2196192 + methylmalonyl-CoA mutase%2C large subunit TIGRFAM: methylmalonyl-CoA mutase%2C large subunit~KEGG: msm:MSMEG_3159 methylmalonyl-CoA mutase~PFAM: methylmalonyl-CoA mutase%3B cobalamin B12- binding domain protein gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2105 Tpau_2106 Tpau_2106 Tpau_2106 2196192 2197184 + LAO/AO transport system ATPase KEGG: mgi:Mflv_3648 arginine/ornithine transport system ATPase~TIGRFAM: LAO/AO transport system ATPase~PFAM: ArgK protein gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2106 Tpau_2107 Tpau_2107 Tpau_2107 2197298 2198936 + pseudogene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2107 Tpau_2108 Tpau_2108 Tpau_2108 2198933 2199565 + conserved hypothetical protein KEGG: mav:MAV_4423 hypothetical protein gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2108 Tpau_2109 Tpau_2109 Tpau_2109 2199565 2200578 + 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein~KEGG: mab:MAB_2167 putative 3-oxoacyl-ACP synthase III gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2109 Tpau_2110 Tpau_2110 Tpau_2110 2200579 2201811 - putative esterase PFAM: putative esterase~KEGG: rop:ROP_52000 putative esterase gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2110 Tpau_2111 Tpau_2111 Tpau_2111 2201909 2202250 - hypothetical protein KEGG: rop:ROP_06880 hypothetical protein gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2111 Tpau_2112 Tpau_2112 Tpau_2112 2202334 2204844 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: diguanylate cyclase%3B PAS sensor protein~PFAM: EAL domain protein%3B PAS fold-3 domain protein%3B GGDEF domain containing protein%3B PAS fold domain protein%3B PAS fold-4 domain protein~KEGG: rca:Rcas_3136 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: EAL domain protein%3B GGDEF domain containing protein%3B PAC repeat-containing protein%3B PAS domain containing protein gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2112 Tpau_2113 Tpau_2113 Tpau_2113 2204841 2205725 - oxidoreductase domain protein PFAM: oxidoreductase domain protein%3B Semialdehyde dehydrogenase NAD - binding%3B Oxidoreductase domain~KEGG: sen:SACE_0323 hypothetical protein gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2113 Tpau_2114 Tpau_2114 Tpau_2114 2205730 2207187 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: sen:SACE_3862 amino acid permease-associated region gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2114 Tpau_2115 Tpau_2115 Tpau_2115 2207261 2208568 - monooxygenase KEGG: rha:RHA1_ro02881 monooxygenase gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2115 Tpau_2116 Tpau_2116 Tpau_2116 2208583 2209794 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: nfa:nfa54360 putative acyl-CoA dehydrogenase gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2116 Tpau_2117 Tpau_2117 Tpau_2117 2209924 2211171 + secreted protein KEGG: sco:SCO2394 secreted protein gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2117 Tpau_2118 Tpau_2118 Tpau_2118 2211295 2212932 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rer:RER_53370 fatty-acid--CoA ligase gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2118 Tpau_2119 Tpau_2119 Tpau_2119 2212929 2213078 - conserved hypothetical protein KEGG: rha:RHA1_ro02469 hypothetical protein gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2119 Tpau_2120 Tpau_2120 Tpau_2120 2213121 2213546 - conserved hypothetical protein KEGG: sen:SACE_3690 hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2120 Tpau_2121 Tpau_2121 Tpau_2121 2213551 2214024 - conserved hypothetical protein KEGG: sen:SACE_3425 hypothetical protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2121 Tpau_2122 Tpau_2122 Tpau_2122 2214011 2215048 - Inosine/uridine-preferring nucleoside hydrolase PFAM: Inosine/uridine-preferring nucleoside hydrolase~KEGG: rha:RHA1_ro07236 purine nucleosidase gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2122 Tpau_2123 Tpau_2123 Tpau_2123 2215098 2216555 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: nfa:nfa25540 putative short chain dehydrogenase gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2123 Tpau_2124 Tpau_2124 Tpau_2124 2216604 2217128 + carbohydrate kinase%2C thermoresistant glucokinase family TIGRFAM: carbohydrate kinase%2C thermoresistant glucokinase family~KEGG: afw:Anae109_0595 carbohydrate kinase~PFAM: shikimate kinase gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2124 Tpau_2125 Tpau_2125 Tpau_2125 2217138 2218100 - conserved hypothetical protein KEGG: sen:SACE_2856 hypothetical protein gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2125 Tpau_2126 Tpau_2126 Tpau_2126 2218152 2218619 - protein of unknown function DUF417 PFAM: protein of unknown function DUF417~KEGG: mmr:Mmar10_2310 hypothetical protein gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2126 Tpau_2127 Tpau_2127 Tpau_2127 2218759 2219004 + hypothetical protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2127 Tpau_2128 Tpau_2128 Tpau_2128 2219260 2220600 + peptidase M20 PFAM: peptidase M20%3B peptidase dimerisation domain protein~KEGG: nfa:nfa29100 hypothetical protein gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2128 Tpau_2129 Tpau_2129 Tpau_2129 2220632 2221168 + PEBP family protein PFAM: PEBP family protein~KEGG: mav:MAV_2351 hypothetical protein gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2129 Tpau_2130 Tpau_2130 Tpau_2130 2221170 2222252 - dihydroorotate dehydrogenase KEGG: rop:ROP_06260 dihydroorotate dehydrogenase~TIGRFAM: dihydroorotate dehydrogenase~PFAM: dihydroorotate oxidase gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2130 Tpau_2131 Tpau_2131 Tpau_2131 2222258 2222512 - hypothetical protein KEGG: nfa:nfa29170 hypothetical protein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2131 Tpau_2132 Tpau_2132 Tpau_2132 2222521 2223522 - conserved hypothetical protein KEGG: rer:RER_32090 hypothetical protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2132 Tpau_2133 Tpau_2133 Tpau_2133 2223585 2224430 + undecaprenol kinase TIGRFAM: undecaprenol kinase~KEGG: rer:RER_32020 undecaprenyl-diphosphatase~PFAM: Bacitracin resistance protein BacA gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2133 Tpau_2134 Tpau_2134 Tpau_2134 2224417 2225280 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: nfa:nfa26710 putative transcriptional regulator gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2134 Tpau_2135 Tpau_2135 Tpau_2135 2225351 2226241 + dihydrodipicolinate synthase KEGG: sen:SACE_1629 dihydrodipicolinate synthase~TIGRFAM: dihydrodipicolinate synthase~PFAM: dihydrodipicolinate synthetase gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2135 Tpau_2136 Tpau_2136 Tpau_2136 2226228 2229239 - glycoside hydrolase family 38 PFAM: glycoside hydrolase family 38%3B Glycoside hydrolase family 38 central region%3B glycosyl hydrolase 38 domain protein~KEGG: sco:SCO0948 alpha-mannosidase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2136 Tpau_2137 Tpau_2137 Tpau_2137 2229371 2230036 + Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: mgi:Mflv_3044 phosphoglycerate mutase gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2137 Tpau_2138 Tpau_2138 Tpau_2138 2230098 2230679 + conserved hypothetical protein KEGG: rer:RER_32000 hypothetical protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2138 Tpau_2139 Tpau_2139 Tpau_2139 2230680 2231471 + conserved hypothetical protein KEGG: nfa:nfa29330 hypothetical protein gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2139 Tpau_2140 Tpau_2140 Tpau_2140 2231550 2232794 + cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase TIGRFAM: cysteine/1-D-myo-inosityl 2-amino-2-deoxy- alpha-D-glucopyranoside ligase~KEGG: rer:RER_31960 cysteine--1D-myo-inosityl 2- amino-2-deoxy-alpha-D-glucopyranoside ligase MshC~PFAM: Cysteinyl-tRNA synthetase class Ia %3B tRNA synthetase class I (M) gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2140 Tpau_2141 Tpau_2141 Tpau_2141 2232820 2233131 + hypothetical protein gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2141 Tpau_2142 Tpau_2142 Tpau_2142 2233137 2234297 + type I phosphodiesterase/nucleotide pyrophosphatase PFAM: type I phosphodiesterase/nucleotide pyrophosphatase~KEGG: ami:Amir_3008 type I phosphodiesterase/nucleotide pyrophosphatase gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2142 Tpau_2143 Tpau_2143 Tpau_2143 2234294 2235199 - protein of unknown function DUF75 PFAM: protein of unknown function DUF75~KEGG: rha:RHA1_ro00860 hypothetical protein gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2143 Tpau_2144 Tpau_2144 Tpau_2144 2235284 2239015 - methionine synthase KEGG: mjl:Mjls_3161 B12-dependent methionine synthase~TIGRFAM: methionine synthase~PFAM: homocysteine S-methyltransferase%3B Methionine synthase B12-binding module cap domain protein%3B cobalamin B12-binding domain protein%3B dihydropteroate synthase DHPS%3B Vitamin B12 dependent methionine synthase activation region gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2144 Tpau_2145 Tpau_2145 Tpau_2145 2239248 2240957 - 5'-Nucleotidase domain protein PFAM: 5'-Nucleotidase domain protein%3B metallophosphoesterase~KEGG: rpc:RPC_1152 5'-nucleotidase-like gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2145 Tpau_2146 Tpau_2146 Tpau_2146 2241106 2241747 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: nfa:nfa31900 putative hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2146 Tpau_2147 Tpau_2147 Tpau_2147 2241744 2242193 - hypothetical protein KEGG: similar to H02F09.3 gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2147 Tpau_2148 Tpau_2148 Tpau_2148 2242280 2244169 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: msm:MSMEG_5823 membrane-spanning protein gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2148 Tpau_2149 Tpau_2149 Tpau_2149 2244211 2244492 + phosphoribosyl-ATP diphosphatase KEGG: msm:MSMEG_4181 phosphoribosyl-ATP pyrophosphatase~TIGRFAM: phosphoribosyl-ATP diphosphatase~PFAM: phosphoribosyl-ATP pyrophosphohydrolase gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2149 Tpau_2150 Tpau_2150 Tpau_2150 2244516 2245361 + ATP phosphoribosyltransferase TIGRFAM: ATP phosphoribosyltransferase~KEGG: nfa:nfa31850 ATP phosphoribosyltransferase~PFAM: ATP phosphoribosyltransferase catalytic region%3B Histidine biosynthesis protein HisG domain gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2150 Tpau_2151 Tpau_2151 Tpau_2151 2245372 2246202 - conserved hypothetical protein KEGG: rer:RER_31830 hypothetical protein gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2151 Tpau_2152 Tpau_2152 Tpau_2152 2246317 2247144 + tRNA (adenine-N(1)-)-methyltransferase KEGG: rha:RHA1_ro00851 S-adenosylmethionine- dependent methyltransferase~PFAM: tRNA methyltransferase complex GCD14 subunit gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2152 Tpau_2153 Tpau_2153 Tpau_2153 2247175 2248896 + AAA ATPase central domain protein KEGG: nfa:nfa31800 putative AAA ATPase~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2153 Tpau_2154 Tpau_2154 Tpau_2154 2248954 2251509 + FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits KEGG: nfa:nfa8640 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related%3B ABC-2 type transporter%3B Forkhead-associated protein~SMART: AAA ATPase%3B Forkhead-associated protein gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2154 Tpau_2155 Tpau_2155 Tpau_2155 2251534 2253027 + protein of unknown function DUF245 domain protein PFAM: protein of unknown function DUF245 domain protein%3B protein of unknown function DUF275 domain protein~KEGG: rop:ROP_05840 putative proteasome accessory factor gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2155 Tpau_2156 Tpau_2156 Tpau_2156 2253030 2253497 + conserved hypothetical protein KEGG: rha:RHA1_ro04145 hypothetical protein gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2156 Tpau_2157 Tpau_2157 Tpau_2157 2253491 2253865 - conserved hypothetical protein KEGG: tfu:Tfu_2225 hypothetical protein gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2157 Tpau_2158 Tpau_2158 Tpau_2158 2253986 2254180 + protein of unknown function DUF797 PFAM: protein of unknown function DUF797~KEGG: rha:RHA1_ro00845 hypothetical protein gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2158 Tpau_2159 Tpau_2159 Tpau_2159 2254177 2254998 + 20S proteasome A and B subunits PFAM: 20S proteasome A and B subunits~KEGG: rer:RER_31740 20S proteasome beta-type subunit gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2159 Tpau_2160 Tpau_2160 Tpau_2160 2254995 2255723 + 20S proteasome A and B subunits PFAM: 20S proteasome A and B subunits~KEGG: rer:RER_31730 20S proteasome alpha-type subunit gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2160 Tpau_2161 Tpau_2161 Tpau_2161 2255786 2256231 + pseudogene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2161 Tpau_2162 Tpau_2162 Tpau_2162 2256340 2257893 + sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter~KEGG: svi:Svir_14380 SNF family Na+-dependent transporter gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2162 Tpau_2163 Tpau_2163 Tpau_2163 2257890 2258003 + conserved hypothetical protein KEGG: svi:Svir_14370 hypothetical protein gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2163 Tpau_2164 Tpau_2164 Tpau_2164 2258007 2258726 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: cai:Caci_0404 short-chain dehydrogenase/reductase SDR gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2164 Tpau_2165 Tpau_2165 Tpau_2165 2258781 2259347 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: cai:Caci_0403 transcriptional regulator%2C TetR family gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2165 Tpau_2166 Tpau_2166 Tpau_2166 2259389 2260732 + protein of unknown function DUF245 domain protein PFAM: protein of unknown function DUF245 domain protein%3B protein of unknown function DUF275 domain protein~KEGG: mab:MAB_2183 hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2166 Tpau_2167 Tpau_2167 Tpau_2167 2260766 2261743 + conserved hypothetical protein KEGG: mav:MAV_2407 hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2167 Tpau_2168 Tpau_2168 Tpau_2168 2261740 2262714 + conserved hypothetical protein KEGG: mav:MAV_2408 hypothetical protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2168 Tpau_2169 Tpau_2169 Tpau_2169 2262809 2263060 + twin-arginine translocation protein%2C TatA/E family subunit KEGG: msm:MSMEG_3887 twin arginine-targeting protein translocase%2C TatA/E family protein~TIGRFAM: twin-arginine translocation protein%2C TatA/E family subunit~PFAM: sec-independent translocation protein mttA/Hcf106 gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2169 Tpau_2170 Tpau_2170 Tpau_2170 2263089 2264093 + Sec-independent protein translocase%2C TatC subunit KEGG: rop:ROP_05740 sec-independent protein translocase protein TatC~TIGRFAM: Sec-independent protein translocase%2C TatC subunit~PFAM: Sec-independent periplasmic protein translocase gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2170 Tpau_2171 Tpau_2171 Tpau_2171 2264080 2266833 + DEAD/DEAH box helicase domain protein KEGG: rop:ROP_05730 putative helicase~PFAM: DEAD/DEAH box helicase domain protein%3B DSH domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2171 Tpau_2172 Tpau_2172 Tpau_2172 2266906 2267589 + conserved hypothetical protein KEGG: mjl:Mjls_2514 hypothetical protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2172 Tpau_2173 Tpau_2173 Tpau_2173 2267602 2268564 - 5'-3' exonuclease%2C N-terminal resolvase-like domain protein KEGG: rop:ROP_05710 putative 5'-3' exonuclease~PFAM: 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain~SMART: 5'-3' exonuclease%3B Helix-hairpin-helix domain protein class 2 gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2173 Tpau_2174 Tpau_2174 Tpau_2174 2268631 2269746 + peptidase M24 PFAM: peptidase M24~KEGG: rop:ROP_05700 putative Xaa-Pro dipeptidase gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2174 Tpau_2175 Tpau_2175 Tpau_2175 2269796 2271244 + sugar transporter KEGG: mva:Mvan_3472 sugar transporter~TIGRFAM: sugar transporter~PFAM: General substrate transporter%3B major facilitator superfamily MFS_1 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2175 Tpau_2176 Tpau_2176 Tpau_2176 2271241 2271639 - PPOX class putative F420-dependent enzyme KEGG: rer:RER_31620 hypothetical protein~TIGRFAM: PPOX class probable F420-dependent enzyme~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2176 Tpau_2177 Tpau_2177 Tpau_2177 2271680 2272450 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: rer:RER_31610 oxidoreductase gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2177 Tpau_2178 Tpau_2178 Tpau_2178 2272447 2273583 + precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit TIGRFAM: precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit%3B precorrin-6Y C5%2C15- methyltransferase (decarboxylating)%2C CbiT subunit~KEGG: msm:MSMEG_3878 precorrin-6Y C5%2C15- methyltransferase (decarboxylating)~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2178 Tpau_2179 Tpau_2179 Tpau_2179 2273580 2274338 + precorrin-4 C11-methyltransferase TIGRFAM: precorrin-4 C11-methyltransferase~KEGG: fra:Francci3_1523 precorrin-4 C11- methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2179 Tpau_2180 Tpau_2180 Tpau_2180 2274335 2275081 + precorrin-6x reductase TIGRFAM: precorrin-6x reductase~KEGG: nfa:nfa31540 precorrin-6x reductase~PFAM: Precorrin-6x reductase CbiJ/CobK gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2180 Tpau_2181 Tpau_2181 Tpau_2181 2275132 2275401 + conserved hypothetical protein KEGG: mab:MAB_1108c hypothetical protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2181 Tpau_2182 Tpau_2182 Tpau_2182 2275379 2275750 - transcriptional regulator%2C MerR family KEGG: sgr:SGR_5718 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2182 Tpau_2183 Tpau_2183 Tpau_2183 2275778 2276575 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: sma:SAV_541 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2183 Tpau_2184 Tpau_2184 Tpau_2184 2276598 2277182 + isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: sen:SACE_3320 isochorismatase gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2184 Tpau_2185 Tpau_2185 Tpau_2185 2277194 2277388 - pseudogene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2185 Tpau_2186 Tpau_2186 Tpau_2186 2277398 2278588 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rha:RHA1_ro04582 major facilitator superfamily sugar transporter gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2186 Tpau_2187 Tpau_2187 Tpau_2187 2278585 2279493 - Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: rha:RHA1_ro03436 esterase/lipase gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2187 Tpau_2188 Tpau_2188 Tpau_2188 2279585 2280430 - transcriptional regulator%2C XRE family KEGG: aau:AAur_3974 putative DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2188 Tpau_2189 Tpau_2189 Tpau_2189 2280510 2280800 - protein of unknown function DUF1330 PFAM: protein of unknown function DUF1330~KEGG: vap:Vapar_1007 protein of unknown function DUF1330 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2189 Tpau_2190 Tpau_2190 Tpau_2190 2280827 2282299 - precorrin-3B C17-methyltransferase KEGG: rer:RER_31440 precorrin-2 C(20)- methyltransferase/precorrin-3B C(17)-methyltransferase~TIGRFAM: precorrin-3B C17-methyltransferase%3B precorrin-2 C20-methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2190 Tpau_2191 Tpau_2191 Tpau_2191 2282296 2282931 - Precorrin-8X methylmutase KEGG: nfa:nfa31510 precorrin-8X methylmutase~PFAM: Precorrin-8X methylmutase CbiC/CobH gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2191 Tpau_2192 Tpau_2192 Tpau_2192 2282941 2283996 - precorrin-3B synthase KEGG: nfa:nfa31400 hypothetical protein~TIGRFAM: precorrin-3B synthase~PFAM: nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2192 Tpau_2193 Tpau_2193 Tpau_2193 2283993 2285063 - 3-oxoacyl-(acyl-carrier-protein) synthase III TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III~KEGG: nfa:nfa52820 3-oxoacyl-(acyl carrier protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein%3B 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2193 Tpau_2194 Tpau_2194 Tpau_2194 2285222 2285833 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa48140 putative transcriptional regulator gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2194 Tpau_2195 Tpau_2195 Tpau_2195 2285830 2286312 + hypothetical protein KEGG: rop:ROP_16610 beta-hydroxyacyl-[acyl-carrier- protein] dehydratase subunit HadA gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2195 Tpau_2196 Tpau_2196 Tpau_2196 2286348 2289923 + cobaltochelatase%2C CobN subunit TIGRFAM: cobaltochelatase%2C CobN subunit~KEGG: rha:RHA1_ro00171 cobaltochelatase subunit CobN~PFAM: CobN/magnesium chelatase gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2196 Tpau_2197 Tpau_2197 Tpau_2197 2290040 2290594 + FxsA cytoplasmic membrane protein PFAM: FxsA cytoplasmic membrane protein~KEGG: mab:MAB_2204 FxsA gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2197 Tpau_2198 Tpau_2198 Tpau_2198 2290615 2292177 + Amidohydrolase 3 PFAM: Amidohydrolase 3~KEGG: nfa:nfa31190 hypothetical protein gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2198 Tpau_2199 Tpau_2199 Tpau_2199 2292174 2293742 + apolipoprotein N-acyltransferase KEGG: rer:RER_31290 apolipoprotein N- acyltransferase~TIGRFAM: apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2199 Tpau_2200 Tpau_2200 Tpau_2200 2293739 2294497 + Dolichyl-phosphate beta-D-mannosyltransferase KEGG: cjk:jk0935 polyprenol-phosphate-mannose synthase~PFAM: glycosyl transferase family 2 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2200 Tpau_2201 Tpau_2201 Tpau_2201 2294563 2294898 - conserved hypothetical protein KEGG: rop:ROP_02600 hypothetical protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2201 Tpau_2202 Tpau_2202 Tpau_2202 2295021 2295356 + conserved hypothetical protein KEGG: rop:ROP_02590 hypothetical protein gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2202 Tpau_2203 Tpau_2203 Tpau_2203 2295387 2296232 + hypothetical protein KEGG: mgi:Mflv_0517 putative secreted protein gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2203 Tpau_2204 Tpau_2204 Tpau_2204 2296229 2296843 + Abortive infection protein PFAM: Abortive infection protein~KEGG: nfa:nfa5750 hypothetical protein gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2204 Tpau_2205 Tpau_2205 Tpau_2205 2296883 2297497 + ErfK/YbiS/YcfS/YnhG family protein PFAM: ErfK/YbiS/YcfS/YnhG family protein~KEGG: rop:ROP_51750 hypothetical protein gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2205 Tpau_2206 Tpau_2206 Tpau_2206 2297562 2299043 - FAD dependent oxidoreductase KEGG: mjl:Mjls_1528 FAD dependent oxidoreductase gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2206 Tpau_2207 Tpau_2207 Tpau_2207 2299167 2299643 - Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: kra:Krad_1910 Rieske (2Fe-2S) domain protein gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2207 Tpau_2208 Tpau_2208 Tpau_2208 2299670 2300155 + conserved hypothetical protein KEGG: fra:Francci3_3736 hypothetical protein gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2208 Tpau_2209 Tpau_2209 Tpau_2209 2300160 2300678 - conserved hypothetical protein KEGG: nfa:nfa16240 hypothetical protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2209 Tpau_2210 Tpau_2210 Tpau_2210 2300699 2301439 - protein of unknown function DUF125 transmembrane PFAM: protein of unknown function DUF125 transmembrane~KEGG: rha:RHA1_ro04892 hypothetical protein gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2210 Tpau_2211 Tpau_2211 Tpau_2211 2301467 2302624 + iron-containing alcohol dehydrogenase PFAM: iron-containing alcohol dehydrogenase~KEGG: rop:ROP_72070 iron-containing alcohol dehydrogenase gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2211 Tpau_2212 Tpau_2212 Tpau_2212 2302621 2304027 - hypothetical protein KEGG: mjl:Mjls_3011 hypothetical protein gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2212 Tpau_2213 Tpau_2213 Tpau_2213 2304115 2305509 - hypothetical protein KEGG: bpy:Bphyt_6225 ABC-type sugar transport system periplasmic component-like protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2213 Tpau_2214 Tpau_2214 Tpau_2214 2305725 2306348 - protein of unknown function DUF305 PFAM: protein of unknown function DUF305~KEGG: rha:RHA1_ro05613 hypothetical protein gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2214 Tpau_2215 Tpau_2215 Tpau_2215 2306429 2306809 - conserved hypothetical protein KEGG: rha:RHA1_ro05612 hypothetical protein gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2215 Tpau_2216 Tpau_2216 Tpau_2216 2306851 2307528 - GntR domain protein KEGG: mab:MAB_2272c putative transcriptional regulator%2C GntR~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2216 Tpau_2217 Tpau_2217 Tpau_2217 2307612 2308853 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mab:MAB_2273 MFS family transporter gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2217 Tpau_2218 Tpau_2218 Tpau_2218 2308862 2309458 - Vitamin K epoxide reductase KEGG: mkm:Mkms_1988 vitamin K epoxide reductase~PFAM: Vitamin K epoxide reductase~SMART: Vitamin K epoxide reductase gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2218 Tpau_2219 Tpau_2219 Tpau_2219 2309476 2311842 - ABC transporter related protein PFAM: ABC transporter related~KEGG: rha:RHA1_ro03835 UvrABC system protein A gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2219 Tpau_2220 Tpau_2220 Tpau_2220 2311902 2312393 - hypothetical protein gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2220 Tpau_2221 Tpau_2221 Tpau_2221 2312556 2313176 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_56630 TetR family transcriptional regulator gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2221 Tpau_2222 Tpau_2222 Tpau_2222 2313251 2314021 + conserved hypothetical protein KEGG: mjl:Mjls_4332 hypothetical protein gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2222 Tpau_2223 Tpau_2223 Tpau_2223 2314348 2315736 + L-carnitine dehydratase/bile acid-inducible protein F PFAM: L-carnitine dehydratase/bile acid-inducible protein F~KEGG: bvi:Bcep1808_2609 L-carnitine dehydratase/bile acid-inducible protein F gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2223 Tpau_2224 Tpau_2224 Tpau_2224 2315757 2316665 + low-density lipoprotein receptor YWTD repeat protein SMART: low-density lipoprotein receptor YWTD repeat~KEGG: ara:Arad_4078 hypothetical protein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2224 Tpau_2225 Tpau_2225 Tpau_2225 2316704 2317654 + 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding%3B 3-hydroxyacyl-CoA dehydrogenase domain protein~KEGG: bxe:Bxe_C0922 putative 3-hydroxyacyl-CoA dehydrogenase gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2225 Tpau_2226 Tpau_2226 Tpau_2226 2317743 2318273 + conserved hypothetical protein KEGG: mjl:Mjls_3957 hypothetical protein gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2226 Tpau_2227 Tpau_2227 Tpau_2227 2318837 2320177 - cytochrome P450 PFAM: cytochrome P450~KEGG: rer:pREC1_0055 cytochrome P450 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2227 Tpau_2228 Tpau_2228 Tpau_2228 2320177 2321268 - L-carnitine dehydratase/bile acid-inducible protein F PFAM: L-carnitine dehydratase/bile acid-inducible protein F~KEGG: ank:AnaeK_1527 L-carnitine dehydratase/bile acid-inducible protein F gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2228 Tpau_2229 Tpau_2229 Tpau_2229 2321265 2322335 - aminoglycoside phosphotransferase PFAM: aminoglycoside phosphotransferase~KEGG: rha:RHA1_ro10360 hypothetical protein gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2229 Tpau_2230 Tpau_2230 Tpau_2230 2322332 2323057 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B Male sterility domain%3B NAD-dependent epimerase/dehydratase~KEGG: bja:bll4020 short chain dehydrogenase gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2230 Tpau_2231 Tpau_2231 Tpau_2231 2323057 2324043 - Beta-ketoacyl-acyl-carrier-protein synthase I KEGG: btl:BALH_1036 3-oxoacyl-(acyl carrier protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein%3B 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2231 Tpau_2232 Tpau_2232 Tpau_2232 2324700 2325137 - Protein-tyrosine phosphatase%2C low molecular weight KEGG: nfa:pnf2260 putative arsenate reductase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2232 Tpau_2233 Tpau_2233 Tpau_2233 2325137 2326234 - arsenical-resistance protein KEGG: mva:Mvan_3222 arsenical-resistance protein~TIGRFAM: arsenical-resistance protein~PFAM: Bile acid:sodium symporter gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2233 Tpau_2234 Tpau_2234 Tpau_2234 2326231 2326656 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mbt:JTY_2662 cadmium inducible protein gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2234 Tpau_2235 Tpau_2235 Tpau_2235 2326759 2327112 + transcriptional regulator%2C ArsR family KEGG: mav:MAV_1492 putative transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2235 Tpau_2236 Tpau_2236 Tpau_2236 2327158 2327568 - rifampin ADP-ribosyl transferase KEGG: aau:AAur_2842 rifampin ADP-ribosyl transferase gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2236 Tpau_2237 Tpau_2237 Tpau_2237 2327592 2328164 - acid phosphatase (Class B) PFAM: acid phosphatase (Class B)~KEGG: sco:SCO3371 hypothetical protein gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2237 Tpau_2238 Tpau_2238 Tpau_2238 2328273 2329205 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: bln:Blon_1408 protein of unknown function DUF6%2C transmembrane gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2238 Tpau_2239 Tpau_2239 Tpau_2239 2329321 2329572 - conserved hypothetical protein KEGG: car:cauri_1895 hypothetical protein gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2239 Tpau_2240 Tpau_2240 Tpau_2240 2329685 2330122 + conserved hypothetical protein KEGG: rop:ROP_69240 hypothetical membrane protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2240 Tpau_2241 Tpau_2241 Tpau_2241 2330137 2330922 - conserved hypothetical protein KEGG: svi:Svir_03790 hypothetical protein gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2241 Tpau_2242 Tpau_2242 Tpau_2242 2330919 2331563 - conserved hypothetical protein KEGG: nfa:nfa51010 hypothetical protein gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2242 Tpau_2243 Tpau_2243 Tpau_2243 2331560 2332822 - virulence factor Mce family protein KEGG: rer:RER_17300 Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2243 Tpau_2244 Tpau_2244 Tpau_2244 2332819 2333889 - virulence factor Mce family protein KEGG: rer:RER_17290 Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2244 Tpau_2245 Tpau_2245 Tpau_2245 2333886 2335238 - virulence factor Mce family protein KEGG: rop:ROP_16460 putative Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2245 Tpau_2246 Tpau_2246 Tpau_2246 2335268 2336320 - virulence factor Mce family protein KEGG: rha:RHA1_ro01969 Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2246 Tpau_2247 Tpau_2247 Tpau_2247 2336317 2337408 - virulence factor Mce family protein KEGG: rop:ROP_16480 putative Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2247 Tpau_2248 Tpau_2248 Tpau_2248 2337405 2338742 - virulence factor Mce family protein KEGG: nfa:nfa51070 putative Mce family protein~TIGRFAM: virulence factor Mce family protein~PFAM: Mammalian cell entry related domain protein gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2248 Tpau_2249 Tpau_2249 Tpau_2249 2338739 2339578 - protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: rha:RHA1_ro01972 hypothetical protein gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2249 Tpau_2250 Tpau_2250 Tpau_2250 2339579 2340382 - protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: rop:ROP_16510 putative YrbE family protein gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2250 Tpau_2251 Tpau_2251 Tpau_2251 2340794 2341357 - putative transcriptional regulator%2C TetR family KEGG: mva:Mvan_0102 TetR family transcriptional regulator gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2251 Tpau_2252 Tpau_2252 Tpau_2252 2341440 2342330 + conserved hypothetical protein KEGG: rer:RER_00810 hypothetical protein gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2252 Tpau_2253 Tpau_2253 Tpau_2253 2342340 2343485 + glycoside hydrolase family 10 KEGG: sma:SAV_4984 beta-1%2C4-xylanase~PFAM: glycoside hydrolase family 10~SMART: glycoside hydrolase family 10 gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2253 Tpau_2254 Tpau_2254 Tpau_2254 2343638 2344003 - hypothetical protein gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2254 Tpau_2255 Tpau_2255 Tpau_2255 2344368 2345810 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sco:SCO7346 membrane transport protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2255 Tpau_2256 Tpau_2256 Tpau_2256 2345817 2347010 + secretory lipase PFAM: secretory lipase~KEGG: mkm:Mkms_1963 secretory lipase gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2256 Tpau_2257 Tpau_2257 Tpau_2257 2347034 2347861 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_60670 putative alcohol dehydrogenase gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2257 Tpau_2258 Tpau_2258 Tpau_2258 2347869 2348525 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa9270 putative transcriptional regulator gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2258 Tpau_2259 Tpau_2259 Tpau_2259 2348530 2349909 - amine oxidase PFAM: amine oxidase%3B FAD dependent oxidoreductase~KEGG: rop:ROP_04530 flavin-containing amine oxidase gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2259 Tpau_2260 Tpau_2260 Tpau_2260 2350039 2350644 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_0341 TetR family transcriptional regulator gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2260 Tpau_2261 Tpau_2261 Tpau_2261 2350723 2352960 - isocitrate dehydrogenase%2C NADP-dependent TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent~KEGG: rha:RHA1_ro00618 isocitrate dehydrogenase (NADP+)~PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2261 Tpau_2262 Tpau_2262 Tpau_2262 2353274 2354359 + protein of unknown function DUF808 PFAM: protein of unknown function DUF808~KEGG: mva:Mvan_1939 hypothetical protein gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2262 Tpau_2263 Tpau_2263 Tpau_2263 2354341 2355186 - transcriptional regulator%2C MerR family KEGG: kse:Ksed_03030 predicted transcriptional regulator~PFAM: transcription activator effector binding%3B regulatory protein MerR~SMART: regulatory protein MerR gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2263 Tpau_2264 Tpau_2264 Tpau_2264 2355221 2355919 - YhhN family protein PFAM: YhhN family protein~KEGG: nca:Noca_2687 YhhN family protein gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2264 Tpau_2265 Tpau_2265 Tpau_2265 2355980 2357233 + beta-lactamase PFAM: beta-lactamase~KEGG: mab:MAB_0064c lipase LipE gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2265 Tpau_2266 Tpau_2266 Tpau_2266 2357288 2359205 + pseudogene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2266 Tpau_2267 Tpau_2267 Tpau_2267 2359456 2361666 + catalase/peroxidase HPI KEGG: msm:MSMEG_6384 catalase/peroxidase HPI~TIGRFAM: catalase/peroxidase HPI~PFAM: Haem peroxidase gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2267 Tpau_2268 Tpau_2268 Tpau_2268 2361793 2362563 + conserved hypothetical protein KEGG: bcv:Bcav_1778 hypothetical protein gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2268 Tpau_2269 Tpau_2269 Tpau_2269 2362624 2363184 + LGFP repeat protein PFAM: LGFP repeat protein~KEGG: mav:MAV_1082 hypothetical protein gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2269 Tpau_2270 Tpau_2270 Tpau_2270 2363239 2364210 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: sen:SACE_6310 hypothetical protein gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2270 Tpau_2271 Tpau_2271 Tpau_2271 2364302 2365663 + exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~KEGG: rha:RHA1_ro05742 sugar transferase~PFAM: sugar transferase gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2271 Tpau_2272 Tpau_2272 Tpau_2272 2366032 2367012 + conserved hypothetical protein KEGG: rha:RHA1_ro05757 hypothetical protein gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2272 Tpau_2273 Tpau_2273 Tpau_2273 2367124 2367690 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: rha:RHA1_ro05733 hypothetical protein gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2273 Tpau_2274 Tpau_2274 Tpau_2274 2367700 2368923 - amino acid permease-associated region PFAM: amino acid permease-associated region%3B Amino acid transporter transmembrane~KEGG: sco:SCO4612 amino acid transporter gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2274 Tpau_2275 Tpau_2275 Tpau_2275 2368920 2369375 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: bcv:Bcav_2607 activator of HSP90 ATPase 1 family protein gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2275 Tpau_2276 Tpau_2276 Tpau_2276 2369493 2370659 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: mtb:TBMG_03771 dehydrogenase gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2276 Tpau_2277 Tpau_2277 Tpau_2277 2370677 2371552 + exodeoxyribonuclease III Xth KEGG: rha:RHA1_ro00291 exodeoxyribonuclease III~TIGRFAM: exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2277 Tpau_2278 Tpau_2278 Tpau_2278 2371563 2371832 + hypothetical protein gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2278 Tpau_2279 Tpau_2279 Tpau_2279 2371879 2372688 + pseudogene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2279 Tpau_2280 Tpau_2280 Tpau_2280 2372688 2373869 - sodium/hydrogen exchanger PFAM: sodium/hydrogen exchanger~KEGG: rer:RER_55610 hypothetical protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2280 Tpau_2281 Tpau_2281 Tpau_2281 2373880 2374425 - hypothetical protein gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2281 Tpau_2282 Tpau_2282 Tpau_2282 2374422 2375561 - Lactate 2-monooxygenase KEGG: mab:MAB_2126 putative L-lactate 2- monooxygenase~PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2282 Tpau_2283 Tpau_2283 Tpau_2283 2375599 2376396 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: kra:Krad_0337 alpha/beta hydrolase fold gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2283 Tpau_2284 Tpau_2284 Tpau_2284 2376471 2376914 + flavodoxin/nitric oxide synthase PFAM: flavodoxin/nitric oxide synthase~KEGG: rha:RHA1_ro01798 NADPH--hemoprotein reductase gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2284 Tpau_2285 Tpau_2285 Tpau_2285 2376977 2377510 - conserved hypothetical protein KEGG: ach:Achl_2309 hypothetical protein gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2285 Tpau_2286 Tpau_2286 Tpau_2286 2377538 2377978 - transcriptional regulator%2C MarR family KEGG: bpm:BURPS1710b_A1004 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2286 Tpau_2287 Tpau_2287 Tpau_2287 2377989 2379392 - band 7 protein PFAM: band 7 protein~KEGG: rer:RER_05390 hypothetical protein gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2287 Tpau_2288 Tpau_2288 Tpau_2288 2379452 2379973 - conserved hypothetical protein KEGG: rer:RER_05400 hypothetical protein gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2288 Tpau_2289 Tpau_2289 Tpau_2289 2380107 2380397 + YiaAB two helix domain protein PFAM: YiaAB two helix domain protein~KEGG: rer:RER_10520 hypothetical protein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2289 Tpau_2290 Tpau_2290 Tpau_2290 2380450 2381076 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_4684 TetR family transcriptional regulator gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2290 Tpau_2291 Tpau_2291 Tpau_2291 2381073 2382320 + Sterol 3-beta-glucosyltransferase KEGG: sen:SACE_6675 UDP-glucose:sterol glucosyltransferase~PFAM: glycosyl transferase family 28 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2291 Tpau_2292 Tpau_2292 Tpau_2292 2382331 2382600 + ATP synthase F0%2C C subunit KEGG: msm:MSMEG_4941 F0F1 ATP synthase subunit C~TIGRFAM: ATP synthase F0%2C C subunit~PFAM: H+transporting two-sector ATPase C subunit gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2292 Tpau_2293 Tpau_2293 Tpau_2293 2382882 2384504 + protein of unknown function DUF222 KEGG: rha:RHA1_ro02511 hypothetical protein~PFAM: protein of unknown function DUF222%3B HNH endonuclease~SMART: HNH nuclease gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2293 Tpau_2294 Tpau_2294 Tpau_2294 2384545 2386341 - exodeoxyribonuclease V%2C alpha subunit TIGRFAM: exodeoxyribonuclease V%2C alpha subunit~KEGG: rha:RHA1_ro01836 exodeoxyribonuclease V alpha chain~SMART: AAA ATPase gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2294 Tpau_2295 Tpau_2295 Tpau_2295 2386341 2389673 - Exodeoxyribonuclease V KEGG: rha:RHA1_ro01837 exodeoxyribonuclease V beta subunit~PFAM: UvrD/REP helicase gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2295 Tpau_2296 Tpau_2296 Tpau_2296 2389673 2392984 - exodeoxyribonuclease V%2C gamma subunit TIGRFAM: exodeoxyribonuclease V%2C gamma subunit~KEGG: rop:ROP_15200 exodeoxyribonuclease V gamma chain~PFAM: Exodeoxyribonuclease V RecC subunit gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2296 Tpau_2297 Tpau_2297 Tpau_2297 2393032 2393838 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 KEGG: bcv:Bcav_1566 HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2297 Tpau_2298 Tpau_2298 Tpau_2298 2393867 2394301 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: rer:RER_45260 hypothetical protein gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2298 Tpau_2299 Tpau_2299 Tpau_2299 2394380 2395237 + conserved hypothetical protein KEGG: rha:RHA1_ro07244 hypothetical protein gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2299 Tpau_2300 Tpau_2300 Tpau_2300 2395249 2395770 + Domain of unknown function DUF1990 PFAM: Domain of unknown function DUF1990~KEGG: rop:ROP_12570 hypothetical protein gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2300 Tpau_2301 Tpau_2301 Tpau_2301 2395767 2396216 - thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: mab:MAB_1888 hypothetical protein gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2301 Tpau_2302 Tpau_2302 Tpau_2302 2396267 2397034 + molybdenum ABC transporter%2C periplasmic molybdate-binding protein KEGG: mva:Mvan_2538 molybdenum ABC transporter%2C periplasmic molybdate-binding protein~TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein~PFAM: extracellular solute-binding protein family 1 gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2302 Tpau_2303 Tpau_2303 Tpau_2303 2397031 2397804 + NifC-like ABC-type porter KEGG: mab:MAB_2434 molybdenum ABC transporter permease~TIGRFAM: NifC-like ABC-type porter%3B molybdate ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2303 Tpau_2304 Tpau_2304 Tpau_2304 2397801 2398808 + ABC transporter related protein KEGG: rop:ROP_34560 putative molybdate ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2304 Tpau_2305 Tpau_2305 Tpau_2305 2398783 2399535 - transcriptional regulator%2C PadR-like family PFAM: transcriptional regulator PadR family protein~KEGG: sco:SCO1366 hypothetical protein gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2305 Tpau_2306 Tpau_2306 Tpau_2306 2399684 2400556 - conserved hypothetical protein KEGG: sma:SAV_5728 hypothetical protein gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2306 Tpau_2307 Tpau_2307 Tpau_2307 2400722 2401195 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mlo:mll4016 acetyltransferase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2307 Tpau_2308 Tpau_2308 Tpau_2308 2401208 2402194 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: nca:Noca_1792 hypothetical protein gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2308 Tpau_2309 Tpau_2309 Tpau_2309 2402280 2402849 + protein of unknown function DUF1470 PFAM: protein of unknown function DUF1470~KEGG: art:Arth_4103 hypothetical protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2309 Tpau_2310 Tpau_2310 Tpau_2310 2402926 2404377 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: mva:Mvan_3078 FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2310 Tpau_2311 Tpau_2311 Tpau_2311 2404447 2404872 - thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: rer:RER_31100 thioesterase gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2311 Tpau_2312 Tpau_2312 Tpau_2312 2404971 2405201 + phage shock protein C%2C PspC PFAM: PspC domain protein~KEGG: rer:RER_48860 hypothetical protein gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2312 Tpau_2313 Tpau_2313 Tpau_2313 2405470 2405859 + transcriptional repressor%2C CopY family PFAM: Penicillinase repressor~KEGG: mav:MAV_2869 transcriptional repressor%2C CopY family protein gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2313 Tpau_2314 Tpau_2314 Tpau_2314 2405880 2406821 + peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: rer:RER_31030 hypothetical protein gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2314 Tpau_2315 Tpau_2315 Tpau_2315 2406943 2407383 + conserved hypothetical protein KEGG: nfa:nfa18640 hypothetical protein gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2315 Tpau_2316 Tpau_2316 Tpau_2316 2407418 2408857 + IMP dehydrogenase family protein TIGRFAM: IMP dehydrogenase family protein~KEGG: mgi:Mflv_3360 inosine 5-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B CBS domain containing protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2316 Tpau_2317 Tpau_2317 Tpau_2317 2409023 2410375 + protein of unknown function DUF21 PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~KEGG: rer:RER_30970 hypothetical protein gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2317 Tpau_2318 Tpau_2318 Tpau_2318 2410368 2411441 + protein of unknown function DUF21 PFAM: protein of unknown function DUF21%3B CBS domain containing protein~KEGG: nfa:nfa25120 hypothetical protein gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2318 Tpau_2319 Tpau_2319 Tpau_2319 2411438 2412328 + conserved hypothetical protein KEGG: nfa:nfa25070 hypothetical protein gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2319 Tpau_2320 Tpau_2320 Tpau_2320 2412423 2412944 + Peptidase M23 PFAM: Peptidase M23~KEGG: sco:SCO0974 secreted protein gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2320 Tpau_2321 Tpau_2321 Tpau_2321 2413198 2414238 + transport system permease protein PFAM: transport system permease protein~KEGG: mab:MAB_0549c putative heme/hemin ABC transporter%2C permease protein gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2321 Tpau_2322 Tpau_2322 Tpau_2322 2414240 2415025 + ABC transporter related protein KEGG: mab:MAB_0548c putative iron compound ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2322 Tpau_2323 Tpau_2323 Tpau_2323 2415035 2416051 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: mab:MAB_0547c putative iron compound ABC transporter%2C substrate-binding protein gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2323 Tpau_2324 Tpau_2324 Tpau_2324 2416068 2416874 - protein of unknown function DUF1396 PFAM: protein of unknown function DUF1396~KEGG: mbt:JTY_1404 putative lipoprotein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2324 Tpau_2325 Tpau_2325 Tpau_2325 2417117 2418682 + cytochrome b5 PFAM: cytochrome b5%3B fatty acid desaturase~KEGG: nfa:nfa49300 hypothetical protein gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2325 Tpau_2326 Tpau_2326 Tpau_2326 2418716 2419897 + chalcone and stilbene synthase domain protein PFAM: chalcone and stilbene synthase domain protein%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein~KEGG: nfa:nfa49290 putative type III polyketide synthase gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2326 Tpau_2327 Tpau_2327 Tpau_2327 2419894 2421633 + cyclic peptide transporter TIGRFAM: cyclic peptide transporter~PFAM: ABC transporter related~KEGG: nfa:nfa49280 putative ABC transporter ATP- binding protein~SMART: AAA ATPase gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2327 Tpau_2328 Tpau_2328 Tpau_2328 2421677 2423863 + malate synthase G TIGRFAM: malate synthase G~KEGG: rha:RHA1_ro02564 malate synthase G~PFAM: Malate synthase family protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2328 Tpau_2329 Tpau_2329 Tpau_2329 2423860 2424681 + conserved hypothetical protein KEGG: lxx:Lxx20650 hypothetical protein gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2329 Tpau_2330 Tpau_2330 Tpau_2330 2424692 2425798 + conserved hypothetical protein KEGG: mab:MAB_2408c hypothetical protein gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2330 Tpau_2331 Tpau_2331 Tpau_2331 2425834 2425971 - hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2331 Tpau_2332 Tpau_2332 Tpau_2332 2426052 2427269 - hypothetical protein gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2332 Tpau_2333 Tpau_2333 Tpau_2333 2427266 2427931 - hypothetical protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2333 Tpau_2334 Tpau_2334 Tpau_2334 2428002 2430821 - glycine dehydrogenase TIGRFAM: glycine dehydrogenase~KEGG: rop:ROP_06370 glycine dehydrogenase~PFAM: Glycine cleavage system P-protein-like gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2334 Tpau_2335 Tpau_2335 Tpau_2335 2431059 2432246 - glycosyltransferase%2C MGT family TIGRFAM: glycosyltransferase%2C MGT family~KEGG: rha:RHA1_ro04832 glycosyltransferase gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2335 Tpau_2336 Tpau_2336 Tpau_2336 2432290 2432907 - transcriptional regulator%2C MerR family SMART: regulatory protein MerR~KEGG: mab:MAB_2406 putative HTH-type transcriptional regulator gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2336 Tpau_2337 Tpau_2337 Tpau_2337 2433101 2433619 - protein of unknown function DUF151 PFAM: protein of unknown function DUF151~KEGG: mpa:MAP1542 hypothetical protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2337 Tpau_2338 Tpau_2338 Tpau_2338 2433658 2434392 - transcriptional regulator%2C MerR family KEGG: rha:RHA1_ro00905 transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2338 Tpau_2339 Tpau_2339 Tpau_2339 2434398 2434838 - FHA domain containing protein KEGG: rer:RER_32240 signal transduction protein GarA~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2339 Tpau_2340 Tpau_2340 Tpau_2340 2434986 2435390 - glycine cleavage system H protein KEGG: mjl:Mjls_2876 glycine cleavage system protein H~TIGRFAM: glycine cleavage system H protein~PFAM: glycine cleavage H-protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2340 Tpau_2341 Tpau_2341 Tpau_2341 2435503 2436111 - CDP-alcohol phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase~KEGG: mab:MAB_2398 putative phosphatidylglycerophosphate synthase PgsA2 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2341 Tpau_2342 Tpau_2342 Tpau_2342 2436116 2438425 - SecA DEAD domain protein PFAM: SecA DEAD domain protein%3B SecA preprotein cross-linking region%3B SecA Wing and Scaffold~KEGG: msm:MSMEG_3654 preprotein translocase subunit SecA gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2342 Tpau_2343 Tpau_2343 Tpau_2343 2438471 2440009 - Aminopeptidase Y KEGG: rop:ROP_19000 putative M28A family peptidase~PFAM: peptidase M28%3B protease-associated PA domain protein gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2343 Tpau_2344 Tpau_2344 Tpau_2344 2440014 2440169 + pseudogene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2344 Tpau_2345 Tpau_2345 Tpau_2345 2440201 2442546 - oxidoreductase alpha (molybdopterin) subunit KEGG: sgr:SGR_6456 putative oxidoreductase~TIGRFAM: oxidoreductase alpha (molybdopterin) subunit~PFAM: molybdopterin oxidoreductase%3B molydopterin dinucleotide-binding region gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2345 Tpau_2346 Tpau_2346 Tpau_2346 2442588 2443442 - formate dehydrogenase family accessory protein FdhD KEGG: kse:Ksed_15020 formate dehydrogenase family accessory protein FdhD~TIGRFAM: formate dehydrogenase family accessory protein FdhD~PFAM: formate dehydrogenase subunit FdhD gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2346 Tpau_2347 Tpau_2347 Tpau_2347 2443575 2444771 + molybdenum cofactor synthesis domain protein KEGG: sgr:SGR_4297 putative molybdopterin biosynthesis protein~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B MoeA domain protein domain IV%3B molybdopterin binding domain gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2347 Tpau_2348 Tpau_2348 Tpau_2348 2444768 2445328 + molybdopterin-guanine dinucleotide biosynthesis protein KEGG: bcv:Bcav_2808 molybdopterin-guanine dinucleotide biosynthesis protein gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2348 Tpau_2349 Tpau_2349 Tpau_2349 2445325 2446191 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: ami:Amir_5124 alpha/beta hydrolase fold protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2349 Tpau_2350 Tpau_2350 Tpau_2350 2446214 2446777 + conserved hypothetical protein KEGG: kse:Ksed_02890 conserved hypothetical protein TIGR03086 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2350 Tpau_2351 Tpau_2351 Tpau_2351 2446979 2447164 + conserved hypothetical protein KEGG: mab:MAB_1241c hypothetical protein gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2351 Tpau_2352 Tpau_2352 Tpau_2352 2447223 2447675 - conserved hypothetical protein KEGG: mab:MAB_4008c hypothetical protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2352 Tpau_2353 Tpau_2353 Tpau_2353 2447672 2448406 - NAD(P)H dehydrogenase (quinone) KEGG: msm:MSMEG_5564 NAD(P)H dehydrogenase%2C quinone family protein~PFAM: NAD(P)H dehydrogenase (quinone) gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2353 Tpau_2354 Tpau_2354 Tpau_2354 2448523 2449077 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_3705 TetR family regulatory protein gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2354 Tpau_2355 Tpau_2355 Tpau_2355 2449183 2449959 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: bch:Bcen2424_6247 short chain dehydrogenase gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2355 Tpau_2356 Tpau_2356 Tpau_2356 2449952 2450350 + protein of unknown function DUF336 PFAM: protein of unknown function DUF336~KEGG: mab:MAB_3505c hypothetical protein gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2356 Tpau_2357 Tpau_2357 Tpau_2357 2450347 2451003 - transcriptional regulator%2C TetR family PFAM: Tetracyclin repressor domain protein%3B regulatory protein TetR~KEGG: rha:RHA1_ro02950 TetR family transcriptional regulator gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2357 Tpau_2358 Tpau_2358 Tpau_2358 2451081 2451776 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: gem:GM21_1022 short-chain dehydrogenase/reductase SDR gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2358 Tpau_2359 Tpau_2359 Tpau_2359 2451773 2452351 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: ami:Amir_5751 GCN5-related N- acetyltransferase gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2359 Tpau_2360 Tpau_2360 Tpau_2360 2452364 2453191 + Protein of unknown function DUF998 PFAM: Protein of unknown function DUF998~KEGG: bcv:Bcav_2142 protein of unknown function DUF998 gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2360 Tpau_2361 Tpau_2361 Tpau_2361 2453553 2454011 + hypothetical protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2361 Tpau_2362 Tpau_2362 Tpau_2362 2454033 2454767 - protein tyrosine/serine phosphatase KEGG: rop:ROP_15590 putative protein-tyrosine- phosphatase gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2362 Tpau_2363 Tpau_2363 Tpau_2363 2454789 2455586 - protein of unknown function DUF1684 PFAM: protein of unknown function DUF1684~KEGG: ami:Amir_2981 protein of unknown function DUF1684 gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2363 Tpau_2364 Tpau_2364 Tpau_2364 2455537 2456091 - hypothetical protein gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2364 Tpau_2365 Tpau_2365 Tpau_2365 2456178 2457554 - Protein of unknown function DUF2252 PFAM: Protein of unknown function DUF2252~KEGG: rop:ROP_21970 hypothetical protein gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2365 Tpau_2366 Tpau_2366 Tpau_2366 2457716 2458492 + Siderophore-interacting protein PFAM: Siderophore-interacting protein%3B FAD-binding 9 siderophore-interacting domain protein~KEGG: rsa:RSal33209_0474 siderophore-interacting protein gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2366 Tpau_2367 Tpau_2367 Tpau_2367 2458607 2459752 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11150 putative Mce family protein gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2367 Tpau_2368 Tpau_2368 Tpau_2368 2459759 2461096 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rer:RER_38560 MFS transporter gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2368 Tpau_2369 Tpau_2369 Tpau_2369 2461083 2462531 - ribosome-associated GTPase EngA TIGRFAM: ribosome-associated GTPase EngA%3B small GTP- binding protein~PFAM: GTP-binding protein HSR1-related%3B Miro domain protein~KEGG: nfa:nfa20130 GTP-binding protein EngA~SMART: AAA ATPase gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2369 Tpau_2370 Tpau_2370 Tpau_2370 2462528 2463220 - cytidylate kinase KEGG: nfa:nfa20120 cytidylate kinase~TIGRFAM: cytidylate kinase~PFAM: cytidylate kinase region gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2370 Tpau_2371 Tpau_2371 Tpau_2371 2463217 2464176 - pseudouridine synthase KEGG: rop:ROP_06590 pseudouridine synthase~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2371 Tpau_2372 Tpau_2372 Tpau_2372 2464223 2464936 - chromosome segregation and condensation protein%2C ScpB KEGG: mav:MAV_3066 segregation and condensation protein B~TIGRFAM: segregation and condensation protein B~PFAM: chromosome segregation and condensation protein ScpB gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2372 Tpau_2373 Tpau_2373 Tpau_2373 2464933 2465820 - chromosome segregation and condensation protein ScpA PFAM: chromosome segregation and condensation protein ScpA~KEGG: mab:MAB_2368 hypothetical protein gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2373 Tpau_2374 Tpau_2374 Tpau_2374 2465817 2466737 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase~KEGG: rer:RER_32590 Soj/ParA-related protein gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2374 Tpau_2375 Tpau_2375 Tpau_2375 2466875 2467849 - tyrosine recombinase XerD KEGG: msm:MSMEG_3744 site-specific tyrosine recombinase XerD~TIGRFAM: tyrosine recombinase XerD~PFAM: integrase family protein%3B integrase domain protein SAM domain protein gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2375 Tpau_2376 Tpau_2376 Tpau_2376 2467854 2468501 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: mjl:Mjls_2958 NUDIX hydrolase gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2376 Tpau_2377 Tpau_2377 Tpau_2377 2468494 2470239 - CTP synthase TIGRFAM: CTP synthase~KEGG: rop:ROP_06640 CTP synthase~PFAM: CTP synthase-like%3B glutamine amidotransferase class-I gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2377 Tpau_2378 Tpau_2378 Tpau_2378 2470304 2471224 - channel protein KEGG: rer:RER_32630 channel protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2378 Tpau_2379 Tpau_2379 Tpau_2379 2471225 2472424 - conserved hypothetical protein KEGG: rha:RHA1_ro00933 hypothetical protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2379 Tpau_2380 Tpau_2380 Tpau_2380 2472592 2473611 + conserved hypothetical protein KEGG: sco:SCO0224 hypothetical protein gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2380 Tpau_2381 Tpau_2381 Tpau_2381 2473648 2475420 - DNA repair protein RecN KEGG: nfa:nfa19980 putative DNA repair protein~TIGRFAM: DNA repair protein RecN~PFAM: SMC domain protein gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2381 Tpau_2382 Tpau_2382 Tpau_2382 2475424 2476311 - ATP-NAD/AcoX kinase PFAM: ATP-NAD/AcoX kinase~KEGG: rer:RER_32660 inorganic polyphosphate/ATP-NAD kinase gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2382 Tpau_2383 Tpau_2383 Tpau_2383 2476308 2477123 - hemolysin A TIGRFAM: hemolysin A~PFAM: RNA-binding S4 domain protein%3B ribosomal RNA methyltransferase RrmJ/FtsJ~KEGG: nfa:nfa19960 putative cytotoxin/hemolysin~SMART: RNA-binding S4 domain protein gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2383 Tpau_2384 Tpau_2384 Tpau_2384 2477126 2477359 - hypothetical protein gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2384 Tpau_2385 Tpau_2385 Tpau_2385 2477370 2478320 - HAD-superfamily hydrolase%2C subfamily IIA KEGG: rop:ROP_06710 putative hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIA~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2385 Tpau_2386 Tpau_2386 Tpau_2386 2478317 2478919 - conserved hypothetical protein KEGG: rer:RER_32690 hypothetical protein gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2386 Tpau_2387 Tpau_2387 Tpau_2387 2479202 2479474 + hypothetical protein KEGG: GK21250 gene product from transcript GK21250- RA gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2387 Tpau_2388 Tpau_2388 Tpau_2388 2485602 2486870 - tyrosyl-tRNA synthetase TIGRFAM: tyrosyl-tRNA synthetase~KEGG: cgb:cg1594 tyrosyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2388 Tpau_2389 Tpau_2389 Tpau_2389 2486905 2487492 - DNA-3-methyladenine glycosylase KEGG: mab:MAB_2352 putative 3-methyladenine DNA glycosylase~TIGRFAM: DNA-3-methyladenine glycosylase~PFAM: methylpurine-DNA glycosylase (MPG) gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2389 Tpau_2390 Tpau_2390 Tpau_2390 2487501 2487716 - protein of unknown function DUF343 PFAM: protein of unknown function DUF343~KEGG: rer:RER_32750 hypothetical protein gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2390 Tpau_2391 Tpau_2391 Tpau_2391 2487718 2488794 - Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: msm:MSMEG_2034 aryl-alcohol dehydrogenase gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2391 Tpau_2392 Tpau_2392 Tpau_2392 2488791 2489282 - conserved hypothetical protein KEGG: mmi:MMAR_5327 hypothetical protein gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2392 Tpau_2393 Tpau_2393 Tpau_2393 2489435 2490166 + ABC transporter related protein KEGG: aau:AAur_1551 putative ABC transporter%2C ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2393 Tpau_2394 Tpau_2394 Tpau_2394 2490163 2490921 + ABC drug efflux pump%2C inner membrane subunit%2C DrrB family KEGG: saq:Sare_3403 multidrug ABC transporter inner membrane protein~TIGRFAM: ABC drug efflux pump%2C inner membrane subunit%2C DrrB family~PFAM: ABC-2 type transporter gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2394 Tpau_2395 Tpau_2395 Tpau_2395 2490918 2491535 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_06770 putative TetR family transcriptional regulator gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2395 Tpau_2396 Tpau_2396 Tpau_2396 2491606 2493054 - argininosuccinate lyase KEGG: nfa:nfa19630 argininosuccinate lyase~TIGRFAM: argininosuccinate lyase~PFAM: fumarate lyase gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2396 Tpau_2397 Tpau_2397 Tpau_2397 2493063 2494484 - argininosuccinate synthase TIGRFAM: argininosuccinate synthase~KEGG: lxx:Lxx21970 argininosuccinate synthase~PFAM: argininosuccinate synthase gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2397 Tpau_2398 Tpau_2398 Tpau_2398 2494508 2494993 - arginine repressor%2C ArgR KEGG: rop:ROP_06820 arginine repressor ArgR~TIGRFAM: arginine repressor~PFAM: arginine repressor gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2398 Tpau_2399 Tpau_2399 Tpau_2399 2494990 2495928 - ornithine carbamoyltransferase TIGRFAM: ornithine carbamoyltransferase~KEGG: mva:Mvan_3310 ornithine carbamoyltransferase~PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region%3B aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2399 Tpau_2400 Tpau_2400 Tpau_2400 2495925 2497106 - acetylornithine and succinylornithine aminotransferase KEGG: rop:ROP_06840 acetylornithine aminotransferase~TIGRFAM: acetylornithine and succinylornithine aminotransferase~PFAM: aminotransferase class-III gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2400 Tpau_2401 Tpau_2401 Tpau_2401 2497115 2498020 - acetylglutamate kinase KEGG: rer:RER_32820 acetylglutamate kinase~TIGRFAM: acetylglutamate kinase~PFAM: aspartate/glutamate/uridylate kinase gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2401 Tpau_2402 Tpau_2402 Tpau_2402 2498017 2499219 - arginine biosynthesis bifunctional protein ArgJ TIGRFAM: arginine biosynthesis bifunctional protein ArgJ~KEGG: nfa:nfa19370 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein~PFAM: arginine biosynthesis protein ArgJ gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2402 Tpau_2403 Tpau_2403 Tpau_2403 2499216 2500250 - N-acetyl-gamma-glutamyl-phosphate reductase TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase~KEGG: rer:RER_32840 N-acetyl-gamma-glutamyl- phosphate reductase~PFAM: Semialdehyde dehydrogenase dimerisation region%3B Semialdehyde dehydrogenase NAD - binding gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2403 Tpau_2404 Tpau_2404 Tpau_2404 2500402 2500617 + hypothetical protein gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2404 Tpau_2405 Tpau_2405 Tpau_2405 2500634 2501302 - LmbE family protein PFAM: LmbE family protein~KEGG: msm:MSMEG_2046 GlcNAc-PI de-N-acetylase family protein gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2405 Tpau_2406 Tpau_2406 Tpau_2406 2501321 2502556 - putative phytochrome sensor protein PFAM: GAF domain protein~KEGG: mgi:Mflv_0123 putative GAF sensor protein gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2406 Tpau_2407 Tpau_2407 Tpau_2407 2502684 2504546 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rha:RHA1_ro04244 flavin binding monooxygenase gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2407 Tpau_2408 Tpau_2408 Tpau_2408 2504554 2507046 - phenylalanyl-tRNA synthetase%2C beta subunit TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit~KEGG: rer:RER_32900 phenylalanyl-tRNA synthetase beta chain gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2408 Tpau_2409 Tpau_2409 Tpau_2409 2507093 2508148 - phenylalanyl-tRNA synthetase%2C alpha subunit TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit~KEGG: nfa:nfa19180 phenylalanyl-tRNA synthetase subunit alpha~PFAM: phenylalanyl-tRNA synthetase class IIc%3B aminoacyl tRNA synthetase class II domain protein gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2409 Tpau_2410 Tpau_2410 Tpau_2410 2508337 2508672 + small multidrug resistance protein PFAM: small multidrug resistance protein~KEGG: bte:BTH_I2505 SMR family multidrug efflux pump gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2410 Tpau_2411 Tpau_2411 Tpau_2411 2508677 2509417 + conserved hypothetical protein KEGG: rer:RER_56570 hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2411 Tpau_2412 Tpau_2412 Tpau_2412 2509268 2510692 - conserved hypothetical protein KEGG: mmi:MMAR_2582 hypothetical protein gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2412 Tpau_2413 Tpau_2413 Tpau_2413 2510758 2511879 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: sma:SAV_1281 two-component system sensor kinase gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2413 Tpau_2414 Tpau_2414 Tpau_2414 2511876 2512523 - two component transcriptional regulator%2C LuxR family KEGG: sma:SAV_1282 two-component system response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2414 Tpau_2415 Tpau_2415 Tpau_2415 2512676 2513473 - tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding~KEGG: rha:RHA1_ro00960 tRNA/rRNA methyltransferase gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2415 Tpau_2416 Tpau_2416 Tpau_2416 2513475 2513855 - ribosomal protein L20 KEGG: mab:MAB_2323 50S ribosomal protein L20~TIGRFAM: ribosomal protein L20~PFAM: ribosomal protein L20 gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2416 Tpau_2417 Tpau_2417 Tpau_2417 2513905 2514099 - ribosomal protein L35 KEGG: sco:SCO1599 50S ribosomal protein L35~TIGRFAM: ribosomal protein L35~PFAM: ribosomal protein L35 gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2417 Tpau_2418 Tpau_2418 Tpau_2418 2514142 2514732 - translation initiation factor IF-3 KEGG: rer:RER_32950 translation initiation factor IF-3~TIGRFAM: translation initiation factor IF-3~PFAM: Translation initiation factor 3-like gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2418 Tpau_2419 Tpau_2419 Tpau_2419 2515061 2515450 + conserved hypothetical protein KEGG: msm:MSMEG_3795 hypothetical protein gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2419 Tpau_2420 Tpau_2420 Tpau_2420 2515534 2515872 + hypothetical protein KEGG: sth:STH1888 hypothetical protein gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2420 Tpau_2421 Tpau_2421 Tpau_2421 2515943 2516176 - glutaredoxin-like protein NrdH KEGG: msm:MSMEG_2297 glutaredoxin~TIGRFAM: glutaredoxin-like protein NrdH~PFAM: glutaredoxin gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2421 Tpau_2422 Tpau_2422 Tpau_2422 2516303 2519161 - excinuclease ABC%2C A subunit KEGG: rer:RER_33000 UvrABC system protein A~TIGRFAM: excinuclease ABC%2C A subunit~PFAM: ABC transporter related gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2422 Tpau_2423 Tpau_2423 Tpau_2423 2519253 2519867 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: nfa:nfa14650 hypothetical protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2423 Tpau_2424 Tpau_2424 Tpau_2424 2519872 2521053 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: sen:SACE_6186 monooxygenase%2C FAD-binding gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2424 Tpau_2425 Tpau_2425 Tpau_2425 2521170 2523485 + conserved hypothetical protein KEGG: rop:ROP_07020 hypothetical protein gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2425 Tpau_2426 Tpau_2426 Tpau_2426 2523499 2523945 - UspA domain protein PFAM: UspA domain protein~KEGG: rop:ROP_07030 putative Usp family protein gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2426 Tpau_2427 Tpau_2427 Tpau_2427 2524080 2526242 - excinuclease ABC%2C B subunit TIGRFAM: excinuclease ABC%2C B subunit~PFAM: helicase domain protein%3B UvrB/UvrC protein~KEGG: rop:ROP_07050 UvrABC system protein B~SMART: DEAD-like helicase %3B helicase domain protein gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2427 Tpau_2428 Tpau_2428 Tpau_2428 2526277 2527308 - conserved hypothetical protein KEGG: svi:Svir_14610 hypothetical protein gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2428 Tpau_2429 Tpau_2429 Tpau_2429 2527393 2528202 + protein of unknown function DUF402 PFAM: protein of unknown function DUF402~KEGG: rer:RER_33090 hypothetical protein gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2429 Tpau_2430 Tpau_2430 Tpau_2430 2528189 2528947 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR%3B Tetracyclin repressor domain protein~KEGG: nfa:nfa37640 putative transcriptional regulator gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2430 Tpau_2431 Tpau_2431 Tpau_2431 2529029 2530728 + pseudogene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2431 Tpau_2432 Tpau_2432 Tpau_2432 2530730 2531287 + zinc finger SWIM domain protein PFAM: zinc finger SWIM domain protein~KEGG: nfa:nfa37660 hypothetical protein gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2432 Tpau_2433 Tpau_2433 Tpau_2433 2531263 2532153 - dephospho-CoA kinase KEGG: rer:RER_33100 dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2433 Tpau_2434 Tpau_2434 Tpau_2434 2532168 2533412 - conserved hypothetical protein KEGG: rer:RER_54290 hypothetical protein gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2434 Tpau_2435 Tpau_2435 Tpau_2435 2533545 2535044 - RNA binding S1 domain protein PFAM: RNA binding S1 domain protein~KEGG: nfa:nfa18970 30S ribosomal protein S1 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2435 Tpau_2436 Tpau_2436 Tpau_2436 2535175 2535981 + Methyltransferase type 11 PFAM: Methyltransferase type 11%3B UbiE/COQ5 methyltransferase%3B Methyltransferase type 12~KEGG: rop:ROP_07100 putative methyltransferase gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2436 Tpau_2437 Tpau_2437 Tpau_2437 2536119 2536580 + hypothetical protein KEGG: nfa:nfa6650 hypothetical protein gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2437 Tpau_2438 Tpau_2438 Tpau_2438 2536708 2537073 + conserved hypothetical protein KEGG: nfa:nfa6650 hypothetical protein gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2438 Tpau_2439 Tpau_2439 Tpau_2439 2537106 2537525 + hypothetical protein gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2439 Tpau_2440 Tpau_2440 Tpau_2440 2537673 2538497 + conserved hypothetical protein KEGG: pjd:Pjdr2_0504 hypothetical protein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2440 Tpau_2441 Tpau_2441 Tpau_2441 2538501 2538842 - transcriptional regulator%2C XRE family KEGG: cdi:DIP0643 putative DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2441 Tpau_2442 Tpau_2442 Tpau_2442 2538937 2539542 - Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase domain protein hydrolase~KEGG: sma:SAV_3908 hydrolase gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2442 Tpau_2443 Tpau_2443 Tpau_2443 2539586 2540485 - Patatin PFAM: Patatin~KEGG: art:Arth_0447 patatin gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2443 Tpau_2444 Tpau_2444 Tpau_2444 2540672 2541919 - hypothetical protein KEGG: rer:RER_58620 RNA-directed DNA polymerase gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2444 Tpau_2445 Tpau_2445 Tpau_2445 2542183 2544936 - DNA polymerase I SMART: 5'-3' exonuclease%3B DNA-directed DNA polymerase%3B 3'-5' exonuclease%3B Helix-hairpin-helix domain protein class 2~TIGRFAM: DNA polymerase I~KEGG: rha:RHA1_ro00990 DNA polymerase I~PFAM: DNA-directed DNA polymerase%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2445 Tpau_2446 Tpau_2446 Tpau_2446 2544946 2545377 - hypothetical protein gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2446 Tpau_2447 Tpau_2447 Tpau_2447 2545377 2546615 - conserved hypothetical protein KEGG: aba:Acid345_4150 hypothetical protein gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2447 Tpau_2448 Tpau_2448 Tpau_2448 2546612 2547754 - conserved hypothetical protein KEGG: rba:RB3221 hypothetical protein gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2448 Tpau_2449 Tpau_2449 Tpau_2449 2547963 2548148 + protein of unknown function DUF1508 PFAM: protein of unknown function DUF1508~KEGG: tde:TDE0826 hypothetical protein gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2449 Tpau_2450 Tpau_2450 Tpau_2450 2548285 2548941 + conserved hypothetical protein KEGG: sgr:SGR_5956 hypothetical protein gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2450 Tpau_2451 Tpau_2451 Tpau_2451 2548966 2549985 + transcriptional regulator%2C MerR family KEGG: sco:SCO0407 transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR%3B PBS lyase HEAT domain protein repeat-containing protein gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2451 Tpau_2452 Tpau_2452 Tpau_2452 2549972 2551747 - Phospholipase C KEGG: rer:RER_56920 phospholipase C~PFAM: phosphoesterase%3B protein of unknown function DUF756 gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2452 Tpau_2453 Tpau_2453 Tpau_2453 2551833 2552504 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_2957c TetR family transcriptional regulator gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2453 Tpau_2454 Tpau_2454 Tpau_2454 2552614 2554086 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mab:MAB_2958 putative transmembrane-transport protein gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2454 Tpau_2455 Tpau_2455 Tpau_2455 2554126 2554740 + hypothetical protein KEGG: aau:AAur_0984 hypothetical protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2455 Tpau_2456 Tpau_2456 Tpau_2456 2554744 2555166 - conserved hypothetical protein KEGG: fal:FRAAL1295 hypothetical protein gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2456 Tpau_2457 Tpau_2457 Tpau_2457 2555201 2556016 + aminoglycoside/hydroxyurea antibiotic resistance kinase PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase~KEGG: pfo:Pfl01_3891 aminoglycoside/hydroxyurea antibiotic resistance kinase gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2457 Tpau_2458 Tpau_2458 Tpau_2458 2556013 2556372 - transcriptional regulator%2C MerR family KEGG: sma:SAV_4015 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2458 Tpau_2459 Tpau_2459 Tpau_2459 2556414 2557499 + NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase~KEGG: sco:SCO7586 oxidoreductase gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2459 Tpau_2460 Tpau_2460 Tpau_2460 2557479 2558492 - Glutathione transferase KEGG: mav:MAV_1003 glutathione S-transferase gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2460 Tpau_2461 Tpau_2461 Tpau_2461 2558594 2559121 + lipoprotein LppP KEGG: mul:MUL_1475 lipoprotein LppP gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2461 Tpau_2462 Tpau_2462 Tpau_2462 2559122 2559631 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: aau:AAur_0179 putative glyoxalase family protein gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2462 Tpau_2463 Tpau_2463 Tpau_2463 2559728 2560474 + transcriptional regulator%2C AraC family KEGG: kra:Krad_0958 helix-turn-helix-domain containing protein AraC type~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2463 Tpau_2464 Tpau_2464 Tpau_2464 2560475 2560738 - hypothetical protein KEGG: mmi:MMAR_2786 hypothetical protein gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2464 Tpau_2465 Tpau_2465 Tpau_2465 2560782 2561390 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro00436 hypothetical protein gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2465 Tpau_2466 Tpau_2466 Tpau_2466 2561441 2562376 + Uncharacterized conserved protein UCP07580 PFAM: Uncharacterised conserved protein UCP07580~KEGG: rop:ROP_04670 hypothetical protein gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2466 Tpau_2467 Tpau_2467 Tpau_2467 2562380 2563531 + conserved hypothetical protein KEGG: nfa:nfa11910 hypothetical protein gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2467 Tpau_2468 Tpau_2468 Tpau_2468 2563573 2564877 + Beta-ketoacyl synthase PFAM: Beta-ketoacyl synthase~KEGG: mva:Mvan_3756 3-oxoacyl-(acyl carrier protein) synthase II gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2468 Tpau_2469 Tpau_2469 Tpau_2469 2564878 2565123 - hypothetical protein gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2469 Tpau_2470 Tpau_2470 Tpau_2470 2565302 2566615 + protein of unknown function DUF222 KEGG: rha:RHA1_ro02511 hypothetical protein~PFAM: protein of unknown function DUF222~SMART: HNH nuclease gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2470 Tpau_2471 Tpau_2471 Tpau_2471 2566596 2567882 - transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: mul:MUL_4727 transposase for IS2606 gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2471 Tpau_2472 Tpau_2472 Tpau_2472 2568009 2568338 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2472 Tpau_2473 Tpau_2473 Tpau_2473 2568335 2569243 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2473 Tpau_2474 Tpau_2474 Tpau_2474 2569296 2569643 + hypothetical protein gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2474 Tpau_2475 Tpau_2475 Tpau_2475 2569685 2570548 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: nfa:nfa26230 haloalkane dehalogenase gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2475 Tpau_2476 Tpau_2476 Tpau_2476 2570588 2570722 - hypothetical protein gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2476 Tpau_2477 Tpau_2477 Tpau_2477 2570786 2571199 + hypothetical protein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2477 Tpau_2478 Tpau_2478 Tpau_2478 2571183 2572322 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mgm:Mmc1_2934 GCN5-related N- acetyltransferase gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2478 Tpau_2479 Tpau_2479 Tpau_2479 2572457 2573724 + pseudogene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2479 Tpau_2480 Tpau_2480 Tpau_2480 2573710 2574735 - conserved hypothetical protein KEGG: mgi:Mflv_0919 hypothetical protein gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2480 Tpau_2481 Tpau_2481 Tpau_2481 2574732 2575226 - hypothetical protein gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2481 Tpau_2482 Tpau_2482 Tpau_2482 2575496 2576602 - putative hydrolase KEGG: mab:MAB_2917 putative hydrolase gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2482 Tpau_2483 Tpau_2483 Tpau_2483 2576683 2577300 + response regulator receiver and ANTAR domain protein KEGG: mab:MAB_2627c two-component response regulatory protein~PFAM: response regulator receiver%3B ANTAR domain protein~SMART: response regulator receiver gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2483 Tpau_2484 Tpau_2484 Tpau_2484 2577329 2577634 - hypothetical protein gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2484 Tpau_2485 Tpau_2485 Tpau_2485 2577765 2578745 + Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related protein PFAM: Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related~KEGG: fra:Francci3_2497 putative copper resistance protein D gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2485 Tpau_2486 Tpau_2486 Tpau_2486 2578748 2579470 - Rhomboid family protein PFAM: Rhomboid family protein~KEGG: rop:ROP_35060 rhomboid family protein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2486 Tpau_2487 Tpau_2487 Tpau_2487 2579513 2582347 - ABC transporter related protein KEGG: mpa:MAP3132 hypothetical protein~PFAM: ABC transporter related%3B cobalt transport protein~SMART: AAA ATPase gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2487 Tpau_2488 Tpau_2488 Tpau_2488 2582344 2582913 - hypothetical protein gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2488 Tpau_2489 Tpau_2489 Tpau_2489 2582910 2583800 - Choloyl-CoA hydrolase KEGG: mav:MAV_3169 acyl-CoA thioesterase~PFAM: acyl-CoA thioesterase gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2489 Tpau_2490 Tpau_2490 Tpau_2490 2583825 2585255 - pyruvate kinase TIGRFAM: pyruvate kinase~KEGG: rha:RHA1_ro01007 pyruvate kinase~PFAM: Pyruvate kinase barrel%3B Pyruvate kinase alpha/beta gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2490 Tpau_2491 Tpau_2491 Tpau_2491 2585257 2586291 - prolipoprotein diacylglyceryl transferase KEGG: msm:MSMEG_3222 prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase~PFAM: prolipoprotein diacylglyceryl transferase gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2491 Tpau_2492 Tpau_2492 Tpau_2492 2586325 2587797 - conserved hypothetical protein KEGG: mab:MAB_1277 hypothetical protein gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2492 Tpau_2493 Tpau_2493 Tpau_2493 2587874 2588995 + histidine kinase KEGG: bcv:Bcav_0103 histidine kinase gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2493 Tpau_2494 Tpau_2494 Tpau_2494 2588992 2589618 + two component transcriptional regulator%2C LuxR family KEGG: ami:Amir_4995 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2494 Tpau_2495 Tpau_2495 Tpau_2495 2589615 2590670 + Lycopene beta and epsilon cyclase PFAM: Lycopene beta and epsilon cyclase~KEGG: nfa:nfa34900 putative lycopene cyclase gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2495 Tpau_2496 Tpau_2496 Tpau_2496 2590639 2591007 - thioredoxin KEGG: rop:ROP_07180 thioredoxin~TIGRFAM: thioredoxin~PFAM: Thioredoxin domain gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2496 Tpau_2497 Tpau_2497 Tpau_2497 2591135 2591707 + Curculin domain protein (mannose-binding) lectin KEGG: nfa:nfa49840 hypothetical protein~PFAM: Curculin domain protein (mannose-binding) lectin%3B Peptidoglycan-binding lysin domain~SMART: Curculin domain protein (mannose-binding) lectin%3B Peptidoglycan-binding LysM gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2497 Tpau_2498 Tpau_2498 Tpau_2498 2591780 2591917 - hypothetical protein KEGG: msm:MSMEG_5646 hypothetical protein gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2498 Tpau_2499 Tpau_2499 Tpau_2499 2592397 2593620 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rop:ROP_52020 putative acyl-CoA dehydrogenase gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2499 Tpau_2500 Tpau_2500 Tpau_2500 2593641 2594162 + conserved hypothetical protein KEGG: sgr:SGR_2669 hypothetical protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2500 Tpau_2501 Tpau_2501 Tpau_2501 2594217 2595086 + transcriptional regulator%2C MarR family with acetyltransferase activity KEGG: mab:MAB_1138c MarR family transcriptional regulator~PFAM: GCN5-related N-acetyltransferase%3B regulatory protein MarR~SMART: regulatory protein MarR gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2501 Tpau_2502 Tpau_2502 Tpau_2502 2595151 2596134 + transcriptional regulator%2C AraC family KEGG: mva:Mvan_0972 AraC family transcriptional regulator~PFAM: ThiJ/PfpI domain protein%3B helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2502 Tpau_2503 Tpau_2503 Tpau_2503 2596172 2596873 + ThiJ/PfpI domain protein PFAM: ThiJ/PfpI domain protein~KEGG: msm:MSMEG_1107 isonitrile hydratase%2C putative gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2503 Tpau_2504 Tpau_2504 Tpau_2504 2596870 2597277 - protein of unknown function DUF59 PFAM: protein of unknown function DUF59~KEGG: fra:Francci3_1666 hypothetical protein gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2504 Tpau_2505 Tpau_2505 Tpau_2505 2597274 2597729 - SUF system FeS assembly protein%2C NifU family KEGG: msm:MSMEG_3126 SUF system FeS assembly protein%2C NifU family protein~TIGRFAM: SUF system FeS assembly protein%2C NifU family~PFAM: nitrogen-fixing NifU domain protein gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2505 Tpau_2506 Tpau_2506 Tpau_2506 2597729 2598994 - cysteine desulfurase%2C SufS subfamily KEGG: rop:ROP_69870 cysteine desulfurase/selenocysteine lyase~TIGRFAM: cysteine desulfurase%2C SufS subfamily~PFAM: aminotransferase class V gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2506 Tpau_2507 Tpau_2507 Tpau_2507 2598997 2599773 - FeS assembly ATPase SufC TIGRFAM: FeS assembly ATPase SufC~PFAM: ABC transporter related~KEGG: rer:RER_30570 iron-sulfur cluster assembly protein SufC~SMART: AAA ATPase gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2507 Tpau_2508 Tpau_2508 Tpau_2508 2599794 2600972 - FeS assembly protein SufD KEGG: rop:ROP_69850 putative iron-sulfur cluster assembly protein SufD~TIGRFAM: FeS assembly protein SufD~PFAM: SufBD protein gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2508 Tpau_2509 Tpau_2509 Tpau_2509 2600972 2602429 - FeS assembly protein SufB KEGG: nfa:nfa35600 hypothetical protein~TIGRFAM: FeS assembly protein SufB~PFAM: SufBD protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2509 Tpau_2510 Tpau_2510 Tpau_2510 2602426 2603136 - putative transcriptional regulator PFAM: regulatory protein ArsR%3B Helix-turn-helix type 11 domain protein~KEGG: rer:RER_30540 hypothetical protein gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2510 Tpau_2511 Tpau_2511 Tpau_2511 2603242 2605026 + conserved hypothetical protein KEGG: rha:RHA1_ro07194 hypothetical protein gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2511 Tpau_2512 Tpau_2512 Tpau_2512 2605033 2605965 + ABC transporter related protein KEGG: rop:ROP_69810 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2512 Tpau_2513 Tpau_2513 Tpau_2513 2605967 2606752 + ABC drug efflux pump%2C inner membrane subunit%2C DrrB family KEGG: nfa:nfa35660 putative ABC transporter membrane protein~TIGRFAM: ABC drug efflux pump%2C inner membrane subunit%2C DrrB family~PFAM: ABC-2 type transporter gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2513 Tpau_2514 Tpau_2514 Tpau_2514 2606888 2607868 + cytochrome oxidase assembly PFAM: cytochrome oxidase assembly~KEGG: mkm:Mkms_2474 cytochrome oxidase assembly gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2514 Tpau_2515 Tpau_2515 Tpau_2515 2607865 2608158 + conserved hypothetical protein KEGG: mab:MAB_2756c hypothetical protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2515 Tpau_2516 Tpau_2516 Tpau_2516 2608162 2608731 - bifunctional deaminase-reductase domain protein PFAM: bifunctional deaminase-reductase domain protein~KEGG: aau:AAur_0663 riboflavin biosynthesis protein RibD gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2516 Tpau_2517 Tpau_2517 Tpau_2517 2608791 2609756 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: rha:RHA1_ro07188 NADPH:quinone reductase gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2517 Tpau_2518 Tpau_2518 Tpau_2518 2609813 2610388 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro03103 TetR family transcriptional regulator gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2518 Tpau_2519 Tpau_2519 Tpau_2519 2610451 2611287 - transglutaminase domain protein PFAM: transglutaminase domain protein~KEGG: rer:RER_56580 hypothetical protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2519 Tpau_2520 Tpau_2520 Tpau_2520 2611303 2611824 - conserved hypothetical protein KEGG: sco:SCO6238 hypothetical protein gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2520 Tpau_2521 Tpau_2521 Tpau_2521 2611936 2612922 - protoheme IX farnesyltransferase KEGG: nfa:nfa35720 protoheme IX farnesyltransferase~TIGRFAM: protoheme IX farnesyltransferase~PFAM: UbiA prenyltransferase gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2521 Tpau_2522 Tpau_2522 Tpau_2522 2613278 2615377 + transketolase KEGG: msm:MSMEG_3103 transketolase~TIGRFAM: transketolase~PFAM: Transketolase central region%3B Transketolase domain protein gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2522 Tpau_2523 Tpau_2523 Tpau_2523 2615382 2616488 + transaldolase TIGRFAM: transaldolase~KEGG: msm:MSMEG_3102 transaldolase~PFAM: Transaldolase gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2523 Tpau_2524 Tpau_2524 Tpau_2524 2616496 2618034 + glucose-6-phosphate 1-dehydrogenase TIGRFAM: glucose-6-phosphate 1-dehydrogenase~KEGG: mab:MAB_2761 glucose-6-phosphate 1- dehydrogenase~PFAM: glucose-6-phosphate dehydrogenase gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2524 Tpau_2525 Tpau_2525 Tpau_2525 2618031 2618948 + Glucose-6-phosphate dehydrogenase subunit PFAM: Glucose-6-phosphate dehydrogenase subunit~KEGG: rha:RHA1_ro07183 hypothetical protein gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2525 Tpau_2526 Tpau_2526 Tpau_2526 2618945 2619709 + 6-phosphogluconolactonase TIGRFAM: 6-phosphogluconolactonase~KEGG: rer:RER_30410 6-phosphogluconolactonase gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2526 Tpau_2527 Tpau_2527 Tpau_2527 2619717 2620409 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mab:MAB_4629 hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2527 Tpau_2528 Tpau_2528 Tpau_2528 2620427 2621356 - hypothetical protein KEGG: ami:Amir_6275 hypothetical protein gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2528 Tpau_2529 Tpau_2529 Tpau_2529 2621353 2621658 - conserved hypothetical protein KEGG: svi:Svir_32840 hypothetical protein gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2529 Tpau_2530 Tpau_2530 Tpau_2530 2621655 2621954 - hypothetical protein KEGG: ami:Amir_6455 hypothetical protein gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2530 Tpau_2531 Tpau_2531 Tpau_2531 2622243 2624069 + hypothetical protein KEGG: aav:Aave_1398 hypothetical protein gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2531 Tpau_2532 Tpau_2532 Tpau_2532 2624044 2624442 - pseudogene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2532 Tpau_2533 Tpau_2533 Tpau_2533 2624604 2625752 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mjl:Mjls_3197 acyl-CoA dehydrogenase domain- containing protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2533 Tpau_2534 Tpau_2534 Tpau_2534 2625848 2627440 + serine/threonine protein kinase KEGG: mpa:MAP2026 hypothetical protein~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2534 Tpau_2535 Tpau_2535 Tpau_2535 2627448 2627891 - Limonene-12-epoxide hydrolase PFAM: Limonene-12-epoxide hydrolase~KEGG: mmi:MMAR_1973 hypothetical protein gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2535 Tpau_2536 Tpau_2536 Tpau_2536 2627920 2630685 - Phosphoenolpyruvate carboxylase KEGG: rha:RHA1_ro07181 phosphoenolpyruvate carboxylase~PFAM: phosphoenolpyruvate carboxylase gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2536 Tpau_2537 Tpau_2537 Tpau_2537 2630805 2631050 - preprotein translocase%2C SecG subunit KEGG: nfa:nfa35840 preprotein translocase subunit SecG~TIGRFAM: preprotein translocase%2C SecG subunit~PFAM: Preprotein translocase SecG subunit gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2537 Tpau_2538 Tpau_2538 Tpau_2538 2631111 2631893 - triosephosphate isomerase KEGG: rer:RER_30310 triose-phosphate isomerase~TIGRFAM: triosephosphate isomerase~PFAM: triosephosphate isomerase gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2538 Tpau_2539 Tpau_2539 Tpau_2539 2631890 2633128 - Phosphoglycerate kinase KEGG: msm:MSMEG_3085 phosphoglycerate kinase~PFAM: phosphoglycerate kinase gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2539 Tpau_2540 Tpau_2540 Tpau_2540 2633141 2634157 - glyceraldehyde-3-phosphate dehydrogenase%2C type I TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I~KEGG: mab:MAB_2779c glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: glyceraldehyde 3-phosphate dehydrogenase gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2540 Tpau_2541 Tpau_2541 Tpau_2541 2634320 2634961 - hypothetical protein KEGG: rpe:RPE_2782 putative beta (1-6) glucans synthase gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2541 Tpau_2542 Tpau_2542 Tpau_2542 2634996 2635982 - protein of unknown function DUF199 PFAM: protein of unknown function DUF199%3B Sporulation regulator WhiA-like~KEGG: rer:RER_30280 WhiA-like protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2542 Tpau_2543 Tpau_2543 Tpau_2543 2636041 2637003 - protein of unknown function UPF0052 and CofD PFAM: protein of unknown function UPF0052 and CofD~KEGG: rop:ROP_69560 hypothetical protein gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2543 Tpau_2544 Tpau_2544 Tpau_2544 2637000 2637929 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: mmi:MMAR_2228 hypothetical protein gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2544 Tpau_2545 Tpau_2545 Tpau_2545 2638101 2638514 + peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin~KEGG: nfa:nfa32010 hypothetical protein gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2545 Tpau_2546 Tpau_2546 Tpau_2546 2638585 2640561 + gamma-glutamyltransferase TIGRFAM: gamma-glutamyltransferase~KEGG: rop:ROP_41600 putative gamma-glutamyl transpeptidase~PFAM: gamma-glutamyltranspeptidase gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2546 Tpau_2547 Tpau_2547 Tpau_2547 2640616 2641179 + hypothetical protein gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2547 Tpau_2548 Tpau_2548 Tpau_2548 2641230 2641811 + hypothetical protein gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2548 Tpau_2549 Tpau_2549 Tpau_2549 2641815 2642882 - Arsenical pump membrane protein PFAM: Arsenical pump membrane protein%3B Citrate transporter~KEGG: kra:Krad_3328 arsenical pump membrane protein gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2549 Tpau_2550 Tpau_2550 Tpau_2550 2642879 2644906 - excinuclease ABC%2C C subunit TIGRFAM: excinuclease ABC%2C C subunit~PFAM: excinuclease ABC C subunit domain protein%3B Excinuclease ABC C subunit domain protein%3B helix-hairpin- helix motif%3B UvrB/UvrC protein~KEGG: rop:ROP_69540 UvrABC system protein C~SMART: Excinuclease ABC C subunit domain protein%3B Helix-hairpin-helix DNA-binding class 1 gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2550 Tpau_2551 Tpau_2551 Tpau_2551 2644954 2645292 - conserved hypothetical protein KEGG: mva:Mvan_2955 hypothetical protein gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2551 Tpau_2552 Tpau_2552 Tpau_2552 2645357 2647084 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: nfa:nfa7120 acyl-CoA synthetase gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2552 Tpau_2553 Tpau_2553 Tpau_2553 2647131 2648012 - hypothetical protein KEGG: rer:RER_40460 hypothetical protein gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2553 Tpau_2554 Tpau_2554 Tpau_2554 2648098 2649972 - Protein of unknown function DUF2075 KEGG: rer:RER_40450 hypothetical protein~PFAM: Protein of unknown function DUF2075~SMART: AAA ATPase gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2554 Tpau_2555 Tpau_2555 Tpau_2555 2650137 2651141 + hypothetical protein KEGG: rer:pREC1_0076 hypothetical protein gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2555 Tpau_2556 Tpau_2556 Tpau_2556 2651179 2652633 + amino acid/peptide transporter KEGG: rha:RHA1_ro05158 di/tripeptide permease~TIGRFAM: amino acid/peptide transporter~PFAM: TGF-beta receptor type I/II extracellular region%3B major facilitator superfamily MFS_1 gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2556 Tpau_2557 Tpau_2557 Tpau_2557 2652746 2654326 + glucose-methanol-choline oxidoreductase PFAM: glucose-methanol-choline oxidoreductase%3B GMC oxidoreductase~KEGG: dra:DR_0965 GMC oxidoreductase gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2557 Tpau_2558 Tpau_2558 Tpau_2558 2654323 2655813 + Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: nca:Noca_1053 aldehyde dehydrogenase gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2558 Tpau_2559 Tpau_2559 Tpau_2559 2655815 2656270 - Protein of unknown function DUF2581 PFAM: Protein of unknown function DUF2581~KEGG: rha:RHA1_ro07172 hypothetical protein gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2559 Tpau_2560 Tpau_2560 Tpau_2560 2656295 2656771 - 6%2C7-dimethyl-8-ribityllumazine synthase TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~KEGG: nfa:nfa35990 6%2C7-dimethyl-8-ribityllumazine synthase~PFAM: 67-dimethyl-8-ribityllumazine synthase gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2560 Tpau_2561 Tpau_2561 Tpau_2561 2656768 2658015 - GTP cyclohydrolase II KEGG: rop:ROP_69510 3%2C4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II~TIGRFAM: GTP cyclohydrolase II%3B 3%2C4-dihydroxy-2- butanone 4-phosphate synthase~PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2561 Tpau_2562 Tpau_2562 Tpau_2562 2658018 2658641 - riboflavin synthase%2C alpha subunit TIGRFAM: riboflavin synthase%2C alpha subunit~KEGG: mkm:Mkms_2436 riboflavin synthase subunit alpha~PFAM: Lumazine-binding protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2562 Tpau_2563 Tpau_2563 Tpau_2563 2658930 2659928 - riboflavin biosynthesis protein RibD TIGRFAM: riboflavin biosynthesis protein RibD~KEGG: rop:ROP_69490 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5- amino-6-(5-phosphoribosylamino)uracil reductase~PFAM: bifunctional deaminase-reductase domain protein%3B CMP/dCMP deaminase zinc-binding gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2563 Tpau_2564 Tpau_2564 Tpau_2564 2659925 2660611 - ribulose-phosphate 3-epimerase TIGRFAM: ribulose-phosphate 3-epimerase~KEGG: rha:RHA1_ro07167 ribulose-phosphate 3- epimerase~PFAM: ribulose-phosphate 3-epimerase gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2564 Tpau_2565 Tpau_2565 Tpau_2565 2660753 2661691 + LGFP repeat protein PFAM: LGFP repeat protein~KEGG: car:cauri_0314 putative secreted protein gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2565 Tpau_2566 Tpau_2566 Tpau_2566 2661789 2663147 - Fmu (Sun) domain protein PFAM: Fmu (Sun) domain protein%3B NusB/RsmB/TIM44~KEGG: rop:ROP_69450 putative rRNA methyltransferase gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2566 Tpau_2567 Tpau_2567 Tpau_2567 2663144 2664079 - methionyl-tRNA formyltransferase KEGG: rer:RER_30160 methionyl-tRNA formyltransferase~TIGRFAM: methionyl-tRNA formyltransferase~PFAM: formyl transferase domain protein gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2567 Tpau_2568 Tpau_2568 Tpau_2568 2664079 2664621 - peptide deformylase TIGRFAM: peptide deformylase~KEGG: ami:Amir_5225 peptide deformylase~PFAM: formylmethionine deformylase gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2568 Tpau_2569 Tpau_2569 Tpau_2569 2664804 2665838 + conserved hypothetical protein KEGG: msm:MSMEG_5171 hypothetical protein gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2569 Tpau_2570 Tpau_2570 Tpau_2570 2665873 2667705 - Ceramidase KEGG: cai:Caci_0673 neutral/alkaline nonlysosomal ceramidase~PFAM: Neutral/alkaline nonlysosomal ceramidase gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2570 Tpau_2571 Tpau_2571 Tpau_2571 2667737 2668306 - protein of unknown function DUF1486 PFAM: protein of unknown function DUF1486~KEGG: saq:Sare_2735 hypothetical protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2571 Tpau_2572 Tpau_2572 Tpau_2572 2668354 2669073 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR%3B Tetracyclin repressor domain protein~KEGG: ami:Amir_4056 transcriptional regulator%2C TetR family gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2572 Tpau_2573 Tpau_2573 Tpau_2573 2669081 2670700 - Na+/H+ antiporter NhaA KEGG: ach:Achl_3027 Na+/H+ antiporter NhaA~TIGRFAM: Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter NhaA%3B sodium/hydrogen exchanger gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2573 Tpau_2574 Tpau_2574 Tpau_2574 2670827 2672800 - primosomal protein N' TIGRFAM: primosomal protein N'~KEGG: rer:RER_30120 primosomal protein N' gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2574 Tpau_2575 Tpau_2575 Tpau_2575 2672818 2674041 - S-adenosylmethionine synthetase TIGRFAM: S-adenosylmethionine synthetase~KEGG: rer:RER_30110 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2575 Tpau_2576 Tpau_2576 Tpau_2576 2674077 2675315 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~KEGG: rha:RHA1_ro07157 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase~PFAM: DNA/pantothenate metabolism flavoprotein domain protein%3B flavoprotein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2576 Tpau_2577 Tpau_2577 Tpau_2577 2675327 2675602 - DNA-directed RNA polymerase%2C omega subunit TIGRFAM: DNA-directed RNA polymerase%2C omega subunit~KEGG: mjl:Mjls_2412 DNA-directed RNA polymerase subunit omega gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2577 Tpau_2578 Tpau_2578 Tpau_2578 2675650 2676258 - guanylate kinase SMART: guanylate kinase/L-type calcium channel region~TIGRFAM: guanylate kinase~KEGG: rer:RER_30080 guanylate kinase~PFAM: guanylate kinase gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2578 Tpau_2579 Tpau_2579 Tpau_2579 2676255 2676569 - putative integration host factor KEGG: mbt:JTY_1424 putative integration host factor gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2579 Tpau_2580 Tpau_2580 Tpau_2580 2676898 2677710 - orotidine 5'-phosphate decarboxylase TIGRFAM: orotidine 5'-phosphate decarboxylase~KEGG: rer:RER_30050 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2580 Tpau_2581 Tpau_2581 Tpau_2581 2677707 2681036 - carbamoyl-phosphate synthase%2C large subunit KEGG: rha:RHA1_ro07152 carbamoyl phosphate synthase large subunit~TIGRFAM: carbamoyl-phosphate synthase%2C large subunit~PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B MGS domain protein%3B Carbamoyl-phosphate synthetase large chain oligomerisation%3B Carbamoyl- phosphate synthetase large chain domain protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2581 Tpau_2582 Tpau_2582 Tpau_2582 2681036 2682172 - carbamoyl-phosphate synthase%2C small subunit TIGRFAM: carbamoyl-phosphate synthase%2C small subunit~KEGG: nfa:nfa36200 carbamoyl phosphate synthase small subunit~PFAM: Carbamoyl-phosphate synthase small chain%3B glutamine amidotransferase class-I gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2582 Tpau_2583 Tpau_2583 Tpau_2583 2682173 2682664 - conserved hypothetical protein KEGG: rha:RHA1_ro07150 hypothetical protein gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2583 Tpau_2584 Tpau_2584 Tpau_2584 2682661 2683974 - dihydroorotase%2C multifunctional complex type KEGG: nfa:nfa36220 dihydroorotase~TIGRFAM: dihydroorotase%2C multifunctional complex type~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2584 Tpau_2585 Tpau_2585 Tpau_2585 2684030 2684986 - aspartate carbamoyltransferase TIGRFAM: aspartate carbamoyltransferase~KEGG: mjl:Mjls_2404 aspartate carbamoyltransferase catalytic subunit~PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain%3B aspartate/ornithine carbamoyltransferase Asp/Orn-binding region gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2585 Tpau_2586 Tpau_2586 Tpau_2586 2684983 2685561 - Uracil phosphoribosyltransferase KEGG: rop:ROP_69280 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2586 Tpau_2587 Tpau_2587 Tpau_2587 2685663 2687639 + glucose-methanol-choline oxidoreductase PFAM: glucose-methanol-choline oxidoreductase%3B FAD dependent oxidoreductase~KEGG: nfa:nfa9780 putative oxidoreductase gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2587 Tpau_2588 Tpau_2588 Tpau_2588 2687636 2688604 - Bile acid:sodium symporter PFAM: Bile acid:sodium symporter~KEGG: kra:Krad_0419 bile acid:sodium symporter gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2588 Tpau_2589 Tpau_2589 Tpau_2589 2688654 2689151 - NusB antitermination factor KEGG: rop:ROP_69270 transcription antitermination protein NusB~TIGRFAM: transcription antitermination factor NusB~PFAM: NusB/RsmB/TIM44 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2589 Tpau_2590 Tpau_2590 Tpau_2590 2689152 2689715 - translation elongation factor P KEGG: rha:RHA1_ro07145 elongation factor P~TIGRFAM: translation elongation factor P~PFAM: Elongation factor KOW domain protein%3B Elongation factor P %3B Elongation factor P/YeiP protein gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2590 Tpau_2591 Tpau_2591 Tpau_2591 2689731 2690819 - peptidase M24 PFAM: peptidase M24%3B creatinase~KEGG: rer:RER_29960 aminopeptidase gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2591 Tpau_2592 Tpau_2592 Tpau_2592 2690875 2691411 - conserved hypothetical protein KEGG: mmi:MMAR_2781 hypothetical protein gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2592 Tpau_2593 Tpau_2593 Tpau_2593 2691449 2691814 - YCII-related protein PFAM: YCII-related~KEGG: nca:Noca_0396 DGPFAETKE family protein gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2593 Tpau_2594 Tpau_2594 Tpau_2594 2691890 2694652 - transcriptional regulator%2C LuxR family KEGG: nfa:nfa18100 putative transcriptional regulator~PFAM: regulatory protein LuxR%3B Tetratricopeptide TPR_4~SMART: regulatory protein LuxR gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2594 Tpau_2595 Tpau_2595 Tpau_2595 2694693 2695148 - conserved hypothetical protein KEGG: svi:Svir_37010 conserved hypothetical protein TIGR00026 gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2595 Tpau_2596 Tpau_2596 Tpau_2596 2695259 2695924 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: svi:Svir_37020 transcriptional regulator%2C TetR family gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2596 Tpau_2597 Tpau_2597 Tpau_2597 2695959 2697176 + secretory lipase PFAM: secretory lipase~KEGG: rop:ROP_51020 hypothetical protein gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2597 Tpau_2598 Tpau_2598 Tpau_2598 2697183 2698205 - conserved hypothetical protein KEGG: rer:RER_42950 hypothetical protein gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2598 Tpau_2599 Tpau_2599 Tpau_2599 2698239 2698922 - lipolytic protein G-D-S-L family PFAM: lipolytic protein G-D-S-L family~KEGG: mbt:JTY_0531 hypothetical protein gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2599 Tpau_2600 Tpau_2600 Tpau_2600 2698885 2700129 - hypothetical protein KEGG: cms:CMS_1589 putative surface polysaccharide flippase gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2600 Tpau_2601 Tpau_2601 Tpau_2601 2700188 2701006 - glycosyl transferase family 2 PFAM: glycosyl transferase family 2~KEGG: bbe:BBR47_17410 hypothetical protein gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2601 Tpau_2602 Tpau_2602 Tpau_2602 2700999 2701556 - acetyltransferase-like protein KEGG: kra:Krad_1829 acetyltransferase-like protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2602 Tpau_2603 Tpau_2603 Tpau_2603 2701553 2702167 - lipopolysaccharide biosynthesis protein PFAM: lipopolysaccharide biosynthesis protein~KEGG: rop:ROP_55230 putative protein-tyrosine kinase gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2603 Tpau_2604 Tpau_2604 Tpau_2604 2702125 2703492 - O-antigen polymerase PFAM: O-antigen polymerase~KEGG: rhi:NGR_b18250 exopolysaccharide production protein ExoQ gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2604 Tpau_2605 Tpau_2605 Tpau_2605 2703496 2704032 - conserved hypothetical protein KEGG: pna:Pnap_3184 hypothetical protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2605 Tpau_2606 Tpau_2606 Tpau_2606 2704147 2705055 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2606 Tpau_2607 Tpau_2607 Tpau_2607 2705052 2705381 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2607 Tpau_2608 Tpau_2608 Tpau_2608 2705392 2705565 - hypothetical protein gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2608 Tpau_2609 Tpau_2609 Tpau_2609 2705546 2706148 - lipopolysaccharide biosynthesis protein PFAM: lipopolysaccharide biosynthesis protein~KEGG: sco:SCO2712 hypothetical protein gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2609 Tpau_2610 Tpau_2610 Tpau_2610 2706145 2707281 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: msm:MSMEG_5951 glycosyl transferase%2C group 1%2C putative gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2610 Tpau_2611 Tpau_2611 Tpau_2611 2707278 2708486 - hypothetical protein KEGG: rha:RHA1_ro05767 hypothetical protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2611 Tpau_2612 Tpau_2612 Tpau_2612 2708479 2709705 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: msm:MSMEG_5964 glycosyl transferase%2C group 1%2C putative gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2612 Tpau_2613 Tpau_2613 Tpau_2613 2709702 2710676 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B dTDP-4- dehydrorhamnose reductase~KEGG: krh:KRH_20470 GDP-L-fucose synthase gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2613 Tpau_2614 Tpau_2614 Tpau_2614 2710673 2711701 - GDP-mannose 4%2C6-dehydratase KEGG: krh:KRH_20460 GDP-mannose 4%2C6-dehydratase~TIGRFAM: GDP-mannose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2614 Tpau_2615 Tpau_2615 Tpau_2615 2711752 2713251 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~KEGG: rha:RHA1_ro05438 undecaprenyl-phosphate galactose phosphotransferase~PFAM: sugar transferase gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2615 Tpau_2616 Tpau_2616 Tpau_2616 2713844 2714959 - 3-dehydroquinate synthase TIGRFAM: 3-dehydroquinate synthase~KEGG: rop:ROP_69230 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2616 Tpau_2617 Tpau_2617 Tpau_2617 2714964 2715584 - Shikimate kinase KEGG: nfa:nfa36360 shikimate kinase~PFAM: shikimate kinase gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2617 Tpau_2618 Tpau_2618 Tpau_2618 2715584 2716798 - chorismate synthase TIGRFAM: chorismate synthase~KEGG: rop:ROP_69210 chorismate synthase~PFAM: chorismate synthase gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2618 Tpau_2619 Tpau_2619 Tpau_2619 2716870 2717121 + conserved hypothetical protein KEGG: rop:ROP_07960 hypothetical membrane protein gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2619 Tpau_2620 Tpau_2620 Tpau_2620 2717206 2720757 - DNA polymerase III%2C alpha subunit TIGRFAM: DNA polymerase III%2C alpha subunit~PFAM: DNA polymerase III alpha subunit%3B PHP domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~KEGG: rha:RHA1_ro01069 DNA polymerase III subunit alpha~SMART: phosphoesterase PHP domain protein gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2620 Tpau_2621 Tpau_2621 Tpau_2621 2720895 2722154 - serine/threonine protein kinase KEGG: nfa:nfa8550 putative serine/threonine protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2621 Tpau_2622 Tpau_2622 Tpau_2622 2722244 2724064 - ABC transporter transmembrane region KEGG: nca:Noca_0737 ABC transporter related~PFAM: ABC transporter transmembrane region%3B ABC transporter related~SMART: AAA ATPase gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2622 Tpau_2623 Tpau_2623 Tpau_2623 2724061 2725793 - pseudogene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2623 Tpau_2624 Tpau_2624 Tpau_2624 2725790 2726422 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nca:Noca_0735 regulatory protein%2C TetR gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2624 Tpau_2625 Tpau_2625 Tpau_2625 2726533 2727899 - pseudogene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2625 Tpau_2626 Tpau_2626 Tpau_2626 2728016 2728678 - conserved hypothetical protein KEGG: rha:RHA1_ro01071 hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2626 Tpau_2627 Tpau_2627 Tpau_2627 2728675 2729601 - pseudouridine synthase%2C RluA family KEGG: rop:ROP_08000 pseudouridine synthase RluD~TIGRFAM: pseudouridine synthase%2C RluA family~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2627 Tpau_2628 Tpau_2628 Tpau_2628 2729594 2730142 - lipoprotein signal peptidase KEGG: rop:ROP_08010 signal peptidase II~TIGRFAM: lipoprotein signal peptidase~PFAM: peptidase A8 signal peptidase II gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2628 Tpau_2629 Tpau_2629 Tpau_2629 2730192 2731139 + conserved hypothetical protein KEGG: rer:RER_35360 hypothetical protein gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2629 Tpau_2630 Tpau_2630 Tpau_2630 2731143 2731640 - conserved hypothetical protein KEGG: rha:RHA1_ro01840 hypothetical protein gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2630 Tpau_2631 Tpau_2631 Tpau_2631 2731765 2732712 + Asparaginase/glutaminase PFAM: Asparaginase/glutaminase~KEGG: rop:ROP_43680 putative L-asparaginase gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2631 Tpau_2632 Tpau_2632 Tpau_2632 2732725 2733513 - hypothetical protein KEGG: rer:RER_04540 hypothetical protein gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2632 Tpau_2633 Tpau_2633 Tpau_2633 2733580 2733978 + conserved hypothetical protein KEGG: rha:RHA1_ro03710 hypothetical protein gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2633 Tpau_2634 Tpau_2634 Tpau_2634 2734132 2735743 + pseudogene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2634 Tpau_2635 Tpau_2635 Tpau_2635 2735763 2737163 - DNA-directed DNA polymerase KEGG: msm:MSMEG_3172 DNA polymerase IV~PFAM: UMUC domain protein DNA-repair protein gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2635 Tpau_2636 Tpau_2636 Tpau_2636 2737132 2740284 - isoleucyl-tRNA synthetase KEGG: rer:RER_35420 isoleucyl-tRNA synthetase~TIGRFAM: isoleucyl-tRNA synthetase gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2636 Tpau_2637 Tpau_2637 Tpau_2637 2740514 2741182 - hypothetical protein KEGG: mab:MAB_2018 hypothetical protein gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2637 Tpau_2638 Tpau_2638 Tpau_2638 2741212 2742012 - DivIVA domain protein KEGG: mkm:Mkms_3310 DivIVA family protein~TIGRFAM: DivIVA domain~PFAM: DivIVA family protein gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2638 Tpau_2639 Tpau_2639 Tpau_2639 2742171 2742470 - protein of unknown function YGGT PFAM: protein of unknown function YGGT~KEGG: rop:ROP_08090 hypothetical membrane protein gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2639 Tpau_2640 Tpau_2640 Tpau_2640 2742493 2743161 - protein of unknown function DUF552 PFAM: protein of unknown function DUF552~KEGG: mgi:Mflv_2994 hypothetical protein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2640 Tpau_2641 Tpau_2641 Tpau_2641 2743214 2743924 - alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: rop:ROP_08110 hypothetical protein gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2641 Tpau_2642 Tpau_2642 Tpau_2642 2743921 2744682 - protein of unknown function DUF152 PFAM: protein of unknown function DUF152~KEGG: rha:RHA1_ro01084 hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2642 Tpau_2643 Tpau_2643 Tpau_2643 2744717 2745865 - cell division protein FtsZ KEGG: rer:RER_35490 cell division protein FtsZ~TIGRFAM: cell division protein FtsZ~PFAM: Tubulin/FtsZ GTPase%3B Tubulin/FtsZ%2C 2-layer sandwich domain gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2643 Tpau_2644 Tpau_2644 Tpau_2644 2746055 2746756 - Polypeptide-transport-associated domain protein FtsQ-type PFAM: Polypeptide-transport-associated domain protein FtsQ-type~KEGG: mav:MAV_2338 putative cell division protein FtsQ-like protein gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2644 Tpau_2645 Tpau_2645 Tpau_2645 2746753 2748240 - UDP-N-acetylmuramate/alanine ligase KEGG: rha:RHA1_ro01087 UDP-N-acetylmuramate--L- alanine ligase~TIGRFAM: UDP-N-acetylmuramate/alanine ligase~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2645 Tpau_2646 Tpau_2646 Tpau_2646 2748237 2749319 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase~KEGG: rop:ROP_08160 UDP-N-acetylglucosamine--N- acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase~PFAM: glycosyl transferase family 28%3B Glycosyltransferase 28 domain gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2646 Tpau_2647 Tpau_2647 Tpau_2647 2749313 2750932 - cell division protein FtsW KEGG: rer:RER_35530 cell division protein FtsW~TIGRFAM: cell division protein FtsW~PFAM: cell cycle protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2647 Tpau_2648 Tpau_2648 Tpau_2648 2750929 2752389 - UDP-N-acetylmuramoylalanine/D-glutamate ligase KEGG: msm:MSMEG_4229 UDP-N-acetylmuramoyl-L-alanyl- D-glutamate synthetase~TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2648 Tpau_2649 Tpau_2649 Tpau_2649 2752390 2753469 - phospho-N-acetylmuramoyl-pentapeptide-transferas e TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase~KEGG: rha:RHA1_ro01091 phospho-N-acetylmuramoyl- pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4%2C conserved region%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2649 Tpau_2650 Tpau_2650 Tpau_2650 2753466 2754998 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanylligase KEGG: nfa:nfa17620 putative UDP-N- acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate-D- alanyl-D -alanine ligase~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-di aminopimelate/D-alanyl-D-alanylligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2650 Tpau_2651 Tpau_2651 Tpau_2651 2754995 2756563 - UDP-N-acetylmuramyl-tripeptide synthetase KEGG: rha:RHA1_ro01093 UDP-N-acetylmuramoylalanyl-D- glutamate--2%2C6-diaminopimelate ligase~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2651 Tpau_2652 Tpau_2652 Tpau_2652 2756588 2758552 - Peptidoglycan glycosyltransferase KEGG: rha:RHA1_ro01094 peptidoglycan glycosyltransferase~PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2652 Tpau_2653 Tpau_2653 Tpau_2653 2758549 2759433 - FHA domain-containing protein KEGG: mkm:Mkms_3325 FHA domain-containing protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2653 Tpau_2654 Tpau_2654 Tpau_2654 2759430 2760425 - S-adenosyl-methyltransferase MraW KEGG: nfa:nfa17580 putative methyltransferase~TIGRFAM: S-adenosyl-methyltransferase MraW~PFAM: methyltransferase gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2654 Tpau_2655 Tpau_2655 Tpau_2655 2760605 2761036 - MraZ protein KEGG: nfa:nfa17570 cell division protein MraZ~TIGRFAM: MraZ protein~PFAM: MraZ domain gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2655 Tpau_2656 Tpau_2656 Tpau_2656 2761816 2762229 - conserved hypothetical protein KEGG: rer:RER_35640 hypothetical protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2656 Tpau_2657 Tpau_2657 Tpau_2657 2762334 2762747 - conserved hypothetical protein KEGG: rop:ROP_08270 hypothetical protein gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2657 Tpau_2658 Tpau_2658 Tpau_2658 2763002 2763604 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rop:ROP_08280 hypothetical protein gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2658 Tpau_2659 Tpau_2659 Tpau_2659 2763601 2765181 + beta-carotene ketolase KEGG: rer:RER_35670 beta-carotene ketolase gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2659 Tpau_2660 Tpau_2660 Tpau_2660 2765169 2765936 + putative lipoprotein KEGG: nfa:nfa17510 putative lipoprotein gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2660 Tpau_2661 Tpau_2661 Tpau_2661 2765926 2766867 - 5%2C10-methylenetetrahydrofolate reductase TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase~KEGG: rop:ROP_08330 5%2C10-methylenetetrahydrofolate reductase~PFAM: methylenetetrahydrofolate reductase gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2661 Tpau_2662 Tpau_2662 Tpau_2662 2766892 2767980 + Polyprenyl synthetase PFAM: Polyprenyl synthetase~KEGG: nfa:nfa17390 putative polyprenyl synthase gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2662 Tpau_2663 Tpau_2663 Tpau_2663 2768098 2769090 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: cjk:jk1887 putative iron ABC transport system%2C solute-binding protein gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2663 Tpau_2664 Tpau_2664 Tpau_2664 2769087 2770055 + transport system permease protein PFAM: transport system permease protein~KEGG: car:cauri_0742 iron ABC transport system%2C permease protein gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2664 Tpau_2665 Tpau_2665 Tpau_2665 2770042 2771076 + transport system permease protein PFAM: transport system permease protein~KEGG: kra:Krad_3704 transport system permease protein gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2665 Tpau_2666 Tpau_2666 Tpau_2666 2771073 2771864 + ABC transporter related protein KEGG: ypb:YPTS_4078 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2666 Tpau_2667 Tpau_2667 Tpau_2667 2771901 2773460 + carotene biosynthesis associated membrane protein TIGRFAM: carotene biosynthesis associated membrane protein~KEGG: rop:ROP_08360 mannosyltransferase MptA gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2667 Tpau_2668 Tpau_2668 Tpau_2668 2773470 2773850 - conserved hypothetical protein KEGG: rer:RER_35740 hypothetical protein gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2668 Tpau_2669 Tpau_2669 Tpau_2669 2773970 2776156 + serine/threonine protein kinase with PASTA sensor(s) KEGG: rha:RHA1_ro01111 protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase%3B PASTA domain containing protein~SMART: serine/threonine protein kinase%3B tyrosine protein kinase%3B PASTA domain containing protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2669 Tpau_2670 Tpau_2670 Tpau_2670 2776164 2776949 + RelA/SpoT domain protein PFAM: RelA/SpoT domain protein~KEGG: jde:Jden_0358 RelA/SpoT domain protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2670 Tpau_2671 Tpau_2671 Tpau_2671 2776951 2778825 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: svi:Svir_32550 acyl-CoA synthetase/AMP-acid ligase gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2671 Tpau_2672 Tpau_2672 Tpau_2672 2778864 2780267 - phospho-2-dehydro-3-deoxyheptonate aldolase TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase~KEGG: mgi:Mflv_2971 phospho-2-dehydro-3- deoxyheptonate aldolase~PFAM: DAHP synthetase class II gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2672 Tpau_2673 Tpau_2673 Tpau_2673 2780313 2780789 - conserved hypothetical protein KEGG: rha:RHA1_ro01113 hypothetical protein gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2673 Tpau_2674 Tpau_2674 Tpau_2674 2780801 2781511 - phospholipid/glycerol acyltransferase KEGG: rha:RHA1_ro01115 1-acyl-sn-glycerol-3- phosphate acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2674 Tpau_2675 Tpau_2675 Tpau_2675 2781635 2782579 - ROK family protein PFAM: ROK family protein~KEGG: nfa:nfa17130 putative sugar kinase gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2675 Tpau_2676 Tpau_2676 Tpau_2676 2782576 2783061 - conserved hypothetical protein KEGG: rsq:Rsph17025_4215 hypothetical protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2676 Tpau_2677 Tpau_2677 Tpau_2677 2783054 2784268 - arsenite-transporting ATPase KEGG: mjl:Mjls_3290 arsenite-transporting ATPase gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2677 Tpau_2678 Tpau_2678 Tpau_2678 2784268 2784729 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase%3B cyclase/dehydrase~KEGG: rop:ROP_08470 hypothetical protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2678 Tpau_2679 Tpau_2679 Tpau_2679 2784722 2785132 - conserved hypothetical protein KEGG: rop:ROP_08480 hypothetical protein gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2679 Tpau_2680 Tpau_2680 Tpau_2680 2785281 2787086 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rha:RHA1_ro01121 long-chain-fatty-acid--CoA ligase gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2680 Tpau_2681 Tpau_2681 Tpau_2681 2787143 2788273 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: nfa:nfa17180 putative glycosyltransferase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2681 Tpau_2682 Tpau_2682 Tpau_2682 2788333 2790051 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: rop:ROP_66650 putative acyl-CoA dehydrogenase gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2682 Tpau_2683 Tpau_2683 Tpau_2683 2790095 2791141 - NLP/P60 protein PFAM: NLP/P60 protein~KEGG: rop:ROP_08520 NlpC/P60 family protein gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2683 Tpau_2684 Tpau_2684 Tpau_2684 2791217 2791915 - NLP/P60 protein PFAM: NLP/P60 protein~KEGG: mjl:Mjls_4528 NLP/P60 protein gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2684 Tpau_2685 Tpau_2685 Tpau_2685 2792213 2792449 - conserved hypothetical protein KEGG: kra:Krad_3245 hypothetical protein gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2685 Tpau_2686 Tpau_2686 Tpau_2686 2792597 2794429 + DNA polymerase III%2C epsilon subunit SMART: Exonuclease%3B Excinuclease ABC C subunit domain protein~TIGRFAM: DNA polymerase III%2C epsilon subunit~KEGG: rha:RHA1_ro01126 hypothetical protein~PFAM: Exonuclease RNase T and DNA polymerase III%3B Excinuclease ABC C subunit domain protein gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2686 Tpau_2687 Tpau_2687 Tpau_2687 2794455 2794730 + transcriptional regulator%2C AsnC family PFAM: Transcription regulator%2C AsnC-type-like~KEGG: rop:ROP_08550 hypothetical protein gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2687 Tpau_2688 Tpau_2688 Tpau_2688 2794734 2795585 - HpcH/HpaI aldolase PFAM: HpcH/HpaI aldolase~KEGG: rsa:RSal33209_0935 citrate lyase beta chain gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2688 Tpau_2689 Tpau_2689 Tpau_2689 2795666 2796130 - YbaK/prolyl-tRNA synthetase associated region PFAM: YbaK/prolyl-tRNA synthetase associated region~KEGG: ach:Achl_2700 YbaK/prolyl-tRNA synthetase associated region gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2689 Tpau_2690 Tpau_2690 Tpau_2690 2796127 2797173 - anthranilate phosphoribosyltransferase TIGRFAM: anthranilate phosphoribosyltransferase~KEGG: rha:RHA1_ro01128 anthranilate phosphoribosyltransferase~PFAM: glycosyl transferase family 3%3B Glycosyl transferase%2C family 3-like gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2690 Tpau_2691 Tpau_2691 Tpau_2691 2797197 2797637 - conserved hypothetical protein KEGG: nfa:nfa17250 hypothetical protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2691 Tpau_2692 Tpau_2692 Tpau_2692 2797853 2798398 + Cytochrome-c oxidase KEGG: mjl:Mjls_3302 cytochrome c oxidase%2C subunit III~PFAM: cytochrome c oxidase subunit III gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2692 Tpau_2693 Tpau_2693 Tpau_2693 2798437 2799357 + cytochrome c class I PFAM: cytochrome c class I~KEGG: rop:ROP_08590 menaquinol-cytochrome c reductase cytochrome c subunit gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2693 Tpau_2694 Tpau_2694 Tpau_2694 2799336 2800535 + Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: mab:MAB_1967c ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein) gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2694 Tpau_2695 Tpau_2695 Tpau_2695 2800535 2802160 + Cytochrome b/b6 domain protein PFAM: Cytochrome b/b6 domain~KEGG: rer:RER_35980 menaquinol-cytochrome c reductase cytochrome b subunit gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2695 Tpau_2696 Tpau_2696 Tpau_2696 2802298 2802490 + pseudogene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2696 Tpau_2697 Tpau_2697 Tpau_2697 2802547 2803920 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2697 Tpau_2698 Tpau_2698 Tpau_2698 2804021 2805274 + GH3 auxin-responsive promoter PFAM: GH3 auxin-responsive promoter~KEGG: bcj:BCAM0069 hypothetical protein gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2698 Tpau_2699 Tpau_2699 Tpau_2699 2805271 2806113 + putative hydrolase KEGG: bcj:BCAM0070 putative hydrolase gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2699 Tpau_2700 Tpau_2700 Tpau_2700 2806110 2807300 + Mandelate racemase/muconate lactonizing protein PFAM: Mandelate racemase/muconate lactonizing protein~KEGG: bcj:BCAM0071 putative mandelate racemase/muconate lactonizing enzyme gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2700 Tpau_2701 Tpau_2701 Tpau_2701 2807297 2808052 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2701 Tpau_2702 Tpau_2702 Tpau_2702 2808084 2809553 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase~KEGG: mes:Meso_0482 fumarate reductase/succinate dehydrogenase flavoprotein-like gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2702 Tpau_2703 Tpau_2703 Tpau_2703 2809601 2810731 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rop:ROP_05990 putative drug resistance efflux protein gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2703 Tpau_2704 Tpau_2704 Tpau_2704 2810731 2811537 + fumarylacetoacetate (FAA) hydrolase PFAM: fumarylacetoacetate (FAA) hydrolase~KEGG: ace:Acel_0713 5-carboxymethyl-2- hydroxymuconate delta-isomerase gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2704 Tpau_2705 Tpau_2705 Tpau_2705 2811681 2811974 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2705 Tpau_2706 Tpau_2706 Tpau_2706 2811974 2812873 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2706 Tpau_2707 Tpau_2707 Tpau_2707 2812905 2813375 - pseudogene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2707 Tpau_2708 Tpau_2708 Tpau_2708 2813372 2814361 - daunorubicin resistance ABC transporter ATPase subunit TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit~PFAM: ABC transporter related~KEGG: mgi:Mflv_1936 daunorubicin resistance ABC transporter ATPase subunit~SMART: AAA ATPase gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2708 Tpau_2709 Tpau_2709 Tpau_2709 2814432 2815181 - Protein of unknown function DUF2068%2C transmembrane PFAM: Protein of unknown function DUF2068%2C transmembrane~KEGG: mab:MAB_2589c hypothetical protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2709 Tpau_2710 Tpau_2710 Tpau_2710 2815659 2816306 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: nfa:nfa16400 bifunctional RNase H/acid phosphatase gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2710 Tpau_2711 Tpau_2711 Tpau_2711 2816303 2817043 - protein of unknown function DUF164 PFAM: protein of unknown function DUF164~KEGG: nfa:nfa16390 hypothetical protein gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2711 Tpau_2712 Tpau_2712 Tpau_2712 2817049 2818170 - protein of unknown function DUF34 PFAM: protein of unknown function DUF34~KEGG: nfa:nfa16340 hypothetical protein gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2712 Tpau_2713 Tpau_2713 Tpau_2713 2818237 2818704 + protein tyrosine phosphatase KEGG: rer:RER_36630 protein-tyrosine-phosphatase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2713 Tpau_2714 Tpau_2714 Tpau_2714 2818697 2819581 + putative transmembrane protein KEGG: mjl:Mjls_3359 putative transmembrane protein gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2714 Tpau_2715 Tpau_2715 Tpau_2715 2819523 2820455 - cobalamin biosynthesis protein CobD KEGG: rha:RHA1_ro01188 cobalamin biosynthesis protein~TIGRFAM: cobalamin biosynthesis protein CobD~PFAM: cobalamin biosynthesis protein CbiB gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2715 Tpau_2716 Tpau_2716 Tpau_2716 2820470 2821084 - conserved hypothetical protein KEGG: rer:RER_34320 hypothetical protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2716 Tpau_2717 Tpau_2717 Tpau_2717 2821431 2822849 + pyridine nucleotide-disulfide oxidoreductase dimerization region PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase~KEGG: cmi:CMM_1132 putative pyridine nucleotide- disulphide oxidoreductase gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2717 Tpau_2718 Tpau_2718 Tpau_2718 2822853 2823467 - Methyltransferase type 12 PFAM: Methyltransferase type 12%3B Methyltransferase type 11~KEGG: ami:Amir_3205 methyltransferase type 11 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2718 Tpau_2719 Tpau_2719 Tpau_2719 2823589 2823951 + hypothetical protein gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2719 Tpau_2720 Tpau_2720 Tpau_2720 2824059 2824556 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein~KEGG: nfa:nfa16100 hypothetical protein gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2720 Tpau_2721 Tpau_2721 Tpau_2721 2824553 2824969 - conserved hypothetical protein KEGG: rop:ROP_09180 hypothetical protein gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2721 Tpau_2722 Tpau_2722 Tpau_2722 2825209 2828022 + 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type~KEGG: mva:Mvan_3752 pyruvate dehydrogenase subunit E1 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2722 Tpau_2723 Tpau_2723 Tpau_2723 2828029 2829318 + putative transcriptional regulator%2C PucR family KEGG: rha:RHA1_ro01198 hypothetical protein gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2723 Tpau_2724 Tpau_2724 Tpau_2724 2829456 2830358 + Acyl transferase PFAM: Acyl transferase~KEGG: nfa:nfa16150 acyl-carrier-protein S- malonyltransferase gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2724 Tpau_2725 Tpau_2725 Tpau_2725 2830483 2830788 + phosphopantetheine-binding protein PFAM: phosphopantetheine-binding~KEGG: nfa:nfa16160 acyl carrier protein gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2725 Tpau_2726 Tpau_2726 Tpau_2726 2830792 2832099 + Beta-ketoacyl synthase PFAM: Beta-ketoacyl synthase~KEGG: mva:Mvan_3756 3-oxoacyl-(acyl carrier protein) synthase II gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2726 Tpau_2727 Tpau_2727 Tpau_2727 2832176 2832592 - pyridoxamine 5'-phosphate oxidase-related FMN- binding protein PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding~KEGG: msm:MSMEG_5717 pyridoxamine 5'-phosphate oxidase family protein gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2727 Tpau_2728 Tpau_2728 Tpau_2728 2832722 2833237 - conserved hypothetical protein KEGG: mgi:Mflv_2770 hypothetical protein gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2728 Tpau_2729 Tpau_2729 Tpau_2729 2833373 2834194 - beta-lactamase PFAM: beta-lactamase~KEGG: rop:ROP_09270 hypothetical protein gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2729 Tpau_2730 Tpau_2730 Tpau_2730 2834401 2836386 + conserved hypothetical protein KEGG: mab:MAB_1013 hypothetical protein gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2730 Tpau_2731 Tpau_2731 Tpau_2731 2836391 2837176 - Helix-turn-helix%2C AraC domain protein SMART: Helix-turn-helix%2C AraC domain~KEGG: nfa:nfa15840 putative transcriptional regulator gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2731 Tpau_2732 Tpau_2732 Tpau_2732 2837220 2837585 + conserved hypothetical protein KEGG: bph:Bphy_6314 hypothetical protein gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2732 Tpau_2733 Tpau_2733 Tpau_2733 2837858 2839444 - hypothetical protein KEGG: cag:Cagg_1035 hypothetical protein gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2733 Tpau_2734 Tpau_2734 Tpau_2734 2839588 2840415 - adenylate/guanylate cyclase KEGG: nfa:nfa53340 hypothetical protein~PFAM: adenylyl cyclase class-3/4/guanylyl cyclase~SMART: adenylyl cyclase class-3/4/guanylyl cyclase gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2734 Tpau_2735 Tpau_2735 Tpau_2735 2840476 2840655 - hypothetical protein gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2735 Tpau_2736 Tpau_2736 Tpau_2736 2840973 2841326 + conserved hypothetical protein KEGG: nfa:nfa6650 hypothetical protein gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2736 Tpau_2737 Tpau_2737 Tpau_2737 2841461 2842240 - alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: msm:MSMEG_2032 hypothetical protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2737 Tpau_2738 Tpau_2738 Tpau_2738 2842239 2842481 + conserved hypothetical protein KEGG: rha:RHA1_ro01213 hypothetical protein gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2738 Tpau_2739 Tpau_2739 Tpau_2739 2842478 2844403 - DNA primase TIGRFAM: DNA primase~PFAM: zinc finger CHC2-family protein%3B DNA primase catalytic core domain%3B TOPRIM domain protein%3B DNA primase%2C DnaB-helicase binding domain%3B DNA primase DnaG DnaB-binding~KEGG: rop:ROP_09350 DNA primase~SMART: zinc finger CHC2-family protein%3B DNA primase DnaG DnaB-binding%3B Toprim sub domain protein gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2739 Tpau_2740 Tpau_2740 Tpau_2740 2844423 2845739 - deoxyguanosinetriphosphate triphosphohydrolase TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~KEGG: rer:RER_37000 deoxyguanosinetriphosphate triphosphohydrolase~SMART: metal-dependent phosphohydrolase HD region gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2740 Tpau_2741 Tpau_2741 Tpau_2741 2845743 2846201 - cold-shock DNA-binding domain protein KEGG: nfa:nfa25610 putative cold shock protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2741 Tpau_2742 Tpau_2742 Tpau_2742 2846234 2846665 + 19 kDa lipoprotein antigen precursor LpqH-like protein KEGG: mmi:MMAR_5244 19 kDa lipoprotein antigen precursor LpqH-like protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2742 Tpau_2743 Tpau_2743 Tpau_2743 2846718 2848154 - glycyl-tRNA synthetase KEGG: rop:ROP_09410 glycyl-tRNA synthetase~TIGRFAM: glycyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2743 Tpau_2744 Tpau_2744 Tpau_2744 2848236 2848610 + transcriptional regulator%2C ArsR family KEGG: rha:RHA1_ro01221 arsenical resistance operon repressor~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2744 Tpau_2745 Tpau_2745 Tpau_2745 2848607 2849023 + ferric uptake regulator%2C Fur family PFAM: ferric-uptake regulator~KEGG: mmi:MMAR_3669 zinc uptake regulation protein Zur gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2745 Tpau_2746 Tpau_2746 Tpau_2746 2849031 2849636 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:RER_07500 TetR family transcriptional regulator gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2746 Tpau_2747 Tpau_2747 Tpau_2747 2849633 2850814 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rer:RER_07490 rubredoxin reductase gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2747 Tpau_2748 Tpau_2748 Tpau_2748 2850811 2850999 - Rubredoxin-type Fe(Cys)4 protein PFAM: Rubredoxin-type Fe(Cys)4 protein~KEGG: rop:ROP_22590 rubredoxin gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2748 Tpau_2749 Tpau_2749 Tpau_2749 2851023 2851184 - Rubredoxin-type Fe(Cys)4 protein PFAM: Rubredoxin-type Fe(Cys)4 protein~KEGG: rha:RHA1_ro02535 alkene monooxygenase rubredoxin gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2749 Tpau_2750 Tpau_2750 Tpau_2750 2851181 2852443 - Alkane 1-monooxygenase KEGG: rop:ROP_22570 alkane-1-monooxygenase~PFAM: fatty acid desaturase gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2750 Tpau_2751 Tpau_2751 Tpau_2751 2852641 2853066 + transcriptional regulator%2C MarR family KEGG: krh:KRH_22880 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2751 Tpau_2752 Tpau_2752 Tpau_2752 2853100 2853525 + peroxiredoxin%2C Ohr subfamily KEGG: mjl:Mjls_1204 OsmC family protein~TIGRFAM: peroxiredoxin%2C Ohr subfamily~PFAM: OsmC family protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2752 Tpau_2753 Tpau_2753 Tpau_2753 2853555 2854550 + Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: smt:Smal_2297 alcohol dehydrogenase zinc- binding domain protein gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2753 Tpau_2754 Tpau_2754 Tpau_2754 2854601 2855383 + Methyltransferase type 12 PFAM: Methyltransferase type 12%3B Methyltransferase type 11~KEGG: sen:SACE_3172 putative methyltransferase gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2754 Tpau_2755 Tpau_2755 Tpau_2755 2855385 2855792 - hypothetical protein KEGG: mgi:Mflv_2715 hypothetical protein gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2755 Tpau_2756 Tpau_2756 Tpau_2756 2855789 2856604 - undecaprenyl diphosphate synthase KEGG: nfa:nfa14530 putative undecaprenyl pyrophosphate synthetase~TIGRFAM: undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2756 Tpau_2757 Tpau_2757 Tpau_2757 2856582 2857394 - DNA repair protein RecO KEGG: rha:RHA1_ro01225 DNA repair protein RecO~TIGRFAM: DNA repair protein RecO~PFAM: Recombination protein O RecO gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2757 Tpau_2758 Tpau_2758 Tpau_2758 2857511 2858467 - GTP-binding protein Era KEGG: rha:RHA1_ro01238 GTP-binding protein Era~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein~PFAM: GTP-binding protein HSR1-related%3B KH type 2 domain protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2758 Tpau_2759 Tpau_2759 Tpau_2759 2858464 2858787 - conserved hypothetical protein KEGG: mjl:Mjls_3464 hypothetical protein gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2759 Tpau_2760 Tpau_2760 Tpau_2760 2858784 2860097 - protein of unknown function DUF21 KEGG: rop:ROP_09620 hypothetical membrane protein~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2760 Tpau_2761 Tpau_2761 Tpau_2761 2860101 2860640 - protein of unknown function UPF0054 PFAM: protein of unknown function UPF0054~KEGG: rer:RER_37330 hypothetical protein gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2761 Tpau_2762 Tpau_2762 Tpau_2762 2860637 2861722 - PhoH family protein PFAM: PhoH family protein~KEGG: msm:MSMEG_4497 PhoH family protein gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2762 Tpau_2763 Tpau_2763 Tpau_2763 2861800 2862516 - conserved hypothetical protein KEGG: rop:ROP_09650 hypothetical protein gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2763 Tpau_2764 Tpau_2764 Tpau_2764 2862545 2863303 - protein of unknown function DUF558 PFAM: protein of unknown function DUF558~KEGG: msm:MSMEG_4502 hypothetical protein gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2764 Tpau_2765 Tpau_2765 Tpau_2765 2863310 2864479 - chaperone protein DnaJ TIGRFAM: chaperone protein DnaJ~PFAM: chaperone DnaJ domain protein%3B DnaJ central domain protein%3B heat shock protein DnaJ domain protein~KEGG: rha:RHA1_ro01246 chaperone protein~SMART: heat shock protein DnaJ domain protein gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2765 Tpau_2766 Tpau_2766 Tpau_2766 2864593 2865627 - heat-inducible transcription repressor HrcA KEGG: rha:RHA1_ro01247 heat-inducible transcription repressor~TIGRFAM: heat-inducible transcription repressor HrcA~PFAM: Negative regulator of class I heat shock protein gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2766 Tpau_2767 Tpau_2767 Tpau_2767 2865698 2866051 + Transcription regulator of the Arc/MetJ class- like protein KEGG: msm:MSMEG_4507 hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2767 Tpau_2768 Tpau_2768 Tpau_2768 2866063 2866695 + protein of unknown function DUF541 PFAM: protein of unknown function DUF541~KEGG: mab:MAB_0525c lipoprotein LpqG gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2768 Tpau_2769 Tpau_2769 Tpau_2769 2866757 2867500 + protein of unknown function DUF541 PFAM: protein of unknown function DUF541~KEGG: msm:MSMEG_6109 LpqG protein gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2769 Tpau_2770 Tpau_2770 Tpau_2770 2867504 2868679 - oxygen-independent coproporphyrinogen III oxidase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: oxygen-independent coproporphyrinogen III oxidase~KEGG: nfa:nfa14210 coproporphyrinogen III oxidase~PFAM: Radical SAM domain protein%3B HemN domain protein gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2770 Tpau_2771 Tpau_2771 Tpau_2771 2868954 2870675 + Sulfite reductase (ferredoxin) KEGG: rop:ROP_09710 sulfite reductase~PFAM: nitrite and sulphite reductase 4Fe-4S region%3B nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2771 Tpau_2772 Tpau_2772 Tpau_2772 2870672 2871394 + adenylylsulfate reductase%2C thioredoxin dependent TIGRFAM: adenylylsulfate reductase%2C thioredoxin dependent%3B phosphoadenosine phosphosulfate reductase~KEGG: rer:RER_37470 adenosine 5'-phosphosulfate reductase~PFAM: phosphoadenosine phosphosulfate reductase gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2772 Tpau_2773 Tpau_2773 Tpau_2773 2871391 2872317 + sulfate adenylyltransferase%2C small subunit KEGG: rer:RER_37480 sulfate adenylyltransferase subunit 2~TIGRFAM: sulfate adenylyltransferase%2C small subunit~PFAM: phosphoadenosine phosphosulfate reductase gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2773 Tpau_2774 Tpau_2774 Tpau_2774 2872317 2873594 + sulfate adenylyltransferase%2C large subunit TIGRFAM: sulfate adenylyltransferase%2C large subunit%3B small GTP-binding protein~KEGG: rha:RHA1_ro01254 sulfate adenylyltransferase large subunit~PFAM: protein synthesis factor GTP-binding gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2774 Tpau_2775 Tpau_2775 Tpau_2775 2873784 2874188 - hypothetical protein gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2775 Tpau_2776 Tpau_2776 Tpau_2776 2874188 2875426 - conserved hypothetical protein KEGG: sco:SCO4186 hypothetical protein gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2776 Tpau_2777 Tpau_2777 Tpau_2777 2875467 2876465 - sulfate ABC transporter%2C ATPase subunit TIGRFAM: sulfate ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Transport-associated OB domain protein~KEGG: rop:ROP_09900 sulfate ABC transporter ATP- binding protein~SMART: AAA ATPase gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2777 Tpau_2778 Tpau_2778 Tpau_2778 2876455 2877273 - sulfate ABC transporter%2C inner membrane subunit CysW KEGG: rer:RER_37540 sulfate ABC transporter permease protein~TIGRFAM: sulfate ABC transporter%2C inner membrane subunit CysW%3B sulfate ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2778 Tpau_2779 Tpau_2779 Tpau_2779 2877270 2878061 - sulfate ABC transporter%2C inner membrane subunit CysT KEGG: rer:RER_37550 sulfate ABC transporter permease protein~TIGRFAM: sulfate ABC transporter%2C inner membrane subunit CysT%3B sulfate ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2779 Tpau_2780 Tpau_2780 Tpau_2780 2878061 2879179 - sulfate ABC transporter%2C periplasmic sulfate- binding protein KEGG: nfa:nfa14040 putative transporter~TIGRFAM: sulfate ABC transporter%2C periplasmic sulfate-binding protein~PFAM: extracellular solute-binding protein family 1 gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2780 Tpau_2781 Tpau_2781 Tpau_2781 2879232 2879342 - hypothetical protein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2781 Tpau_2782 Tpau_2782 Tpau_2782 2879335 2879571 - hypothetical protein KEGG: mbt:JTY_2411 hypothetical protein gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2782 Tpau_2783 Tpau_2783 Tpau_2783 2879630 2881618 + glycoside hydrolase 15-related protein PFAM: glycoside hydrolase 15-related~KEGG: mkm:Mkms_3547 glycoside hydrolase 15-related gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2783 Tpau_2784 Tpau_2784 Tpau_2784 2881623 2883653 - Peptidyl-dipeptidase Dcp KEGG: svi:Svir_19990 peptidyl-dipeptidase DCP~PFAM: peptidase M3A and M3B thimet/oligopeptidase F gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2784 Tpau_2785 Tpau_2785 Tpau_2785 2883717 2884121 + hypothetical protein KEGG: mbt:JTY_0986 integral membrane protein gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2785 Tpau_2786 Tpau_2786 Tpau_2786 2884129 2884782 - conserved hypothetical protein KEGG: cgt:cgR_1490 hypothetical protein gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2786 Tpau_2787 Tpau_2787 Tpau_2787 2884779 2885774 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: rha:RHA1_ro01277 2-nitropropane dioxygenase gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2787 Tpau_2788 Tpau_2788 Tpau_2788 2885794 2886903 + conserved hypothetical protein KEGG: ach:Achl_2734 hypothetical protein gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2788 Tpau_2789 Tpau_2789 Tpau_2789 2886963 2887361 - hypothetical protein gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2789 Tpau_2790 Tpau_2790 Tpau_2790 2887744 2889627 - GTP-binding protein LepA KEGG: mva:Mvan_3881 GTP-binding protein LepA~TIGRFAM: GTP-binding protein LepA%3B small GTP- binding protein~PFAM: GTP-binding protein LepA domain protein%3B elongation factor G domain protein%3B protein synthesis factor GTP-binding gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2790 Tpau_2791 Tpau_2791 Tpau_2791 2889646 2890284 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: nca:Noca_4638 GCN5-related N- acetyltransferase gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2791 Tpau_2792 Tpau_2792 Tpau_2792 2890360 2892495 + choline/carnitine/betaine transporter KEGG: art:Arth_3745 choline/carnitine/betaine transporter~TIGRFAM: choline/carnitine/betaine transporter~PFAM: BCCT transporter gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2792 Tpau_2793 Tpau_2793 Tpau_2793 2892492 2894009 + Betaine-aldehyde dehydrogenase KEGG: cmi:CMM_1951 putative glycine betaine aldehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2793 Tpau_2794 Tpau_2794 Tpau_2794 2894006 2895583 + glucose-methanol-choline oxidoreductase PFAM: glucose-methanol-choline oxidoreductase%3B GMC oxidoreductase~KEGG: aau:AAur_0512 choline oxidase gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2794 Tpau_2795 Tpau_2795 Tpau_2795 2895604 2896221 + conserved hypothetical protein KEGG: rop:ROP_09990 hypothetical protein gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2795 Tpau_2796 Tpau_2796 Tpau_2796 2896223 2896612 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: rer:RER_12050 hypothetical protein gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2796 Tpau_2797 Tpau_2797 Tpau_2797 2896624 2897466 - transglutaminase domain protein KEGG: rer:RER_37640 hypothetical protein~PFAM: transglutaminase domain protein%3B transglutaminase domain protein~SMART: transglutaminase domain protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2797 Tpau_2798 Tpau_2798 Tpau_2798 2897463 2898446 - protein of unknown function DUF403 PFAM: protein of unknown function DUF403~KEGG: rha:RHA1_ro01283 hypothetical protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2798 Tpau_2799 Tpau_2799 Tpau_2799 2898433 2900094 - protein of unknown function DUF404 PFAM: protein of unknown function DUF404%3B protein of unknown function DUF407~KEGG: rha:RHA1_ro01284 hypothetical protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2799 Tpau_2800 Tpau_2800 Tpau_2800 2900285 2900545 + ribosomal protein S20 KEGG: msm:MSMEG_4571 30S ribosomal protein S20~TIGRFAM: ribosomal protein S20~PFAM: ribosomal protein S20 gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2800 Tpau_2801 Tpau_2801 Tpau_2801 2900676 2901581 - DNA polymerase III delta PFAM: DNA polymerase III delta~KEGG: nfa:nfa13940 hypothetical protein gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2801 Tpau_2802 Tpau_2802 Tpau_2802 2901553 2903127 - ComEC/Rec2-related protein KEGG: mva:Mvan_3914 ComEC/Rec2-related protein~TIGRFAM: ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2802 Tpau_2803 Tpau_2803 Tpau_2803 2903129 2903962 - competence protein ComEA helix-hairpin-helix repeat protein TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein~PFAM: Soluble ligand binding domain%3B helix-hairpin- helix motif~KEGG: rop:ROP_10140 putative DNA-binding protein~SMART: Helix-hairpin-helix DNA-binding class 1 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2803 Tpau_2804 Tpau_2804 Tpau_2804 2904089 2904928 - degV family protein KEGG: rop:ROP_10150 hypothetical protein~TIGRFAM: degV family protein~PFAM: DegV family protein gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2804 Tpau_2805 Tpau_2805 Tpau_2805 2904932 2905648 - conserved hypothetical protein KEGG: rha:RHA1_ro01294 hypothetical protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2805 Tpau_2806 Tpau_2806 Tpau_2806 2905645 2906349 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: mmi:MMAR_3747 phosphoglycerate mutase%2C Gpm_1 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2806 Tpau_2807 Tpau_2807 Tpau_2807 2906349 2906756 - iojap-like protein KEGG: rha:RHA1_ro01296 hypothetical protein~TIGRFAM: iojap-like protein~PFAM: Iojap-related protein gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2807 Tpau_2808 Tpau_2808 Tpau_2808 2906753 2907436 - nicotinate (nicotinamide) nucleotide adenylyltransferase TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain protein~KEGG: mva:Mvan_3926 nicotinic acid mononucleotide adenylyltransferase~PFAM: cytidylyltransferase gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2808 Tpau_2809 Tpau_2809 Tpau_2809 2907471 2908949 - VWA containing CoxE family protein PFAM: VWA containing CoxE family protein~KEGG: nfa:nfa13730 hypothetical protein gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2809 Tpau_2810 Tpau_2810 Tpau_2810 2908954 2909853 - ATPase associated with various cellular activities AAA_5 KEGG: mkm:Mkms_3610 ATPase~PFAM: ATPase associated with various cellular activities AAA_5~SMART: AAA ATPase gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2810 Tpau_2811 Tpau_2811 Tpau_2811 2909850 2910302 - cyclase/dehydrase PFAM: cyclase/dehydrase~KEGG: rop:ROP_67300 hypothetical protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2811 Tpau_2812 Tpau_2812 Tpau_2812 2910361 2910810 - cyclase/dehydrase PFAM: cyclase/dehydrase~KEGG: mbt:JTY_0876 hypothetical protein gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2812 Tpau_2813 Tpau_2813 Tpau_2813 2910842 2912116 - gamma-glutamyl phosphate reductase TIGRFAM: gamma-glutamyl phosphate reductase~KEGG: rer:RER_37790 gamma-glutamyl phosphate reductase~PFAM: Aldehyde Dehydrogenase gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2813 Tpau_2814 Tpau_2814 Tpau_2814 2912113 2913726 - monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: mmi:MMAR_2987 3-(3-hydroxyphenyl)propionate hydroxylase gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2814 Tpau_2815 Tpau_2815 Tpau_2815 2913723 2914661 - fumarylacetoacetate (FAA) hydrolase PFAM: fumarylacetoacetate (FAA) hydrolase~KEGG: mav:MAV_1803 2-hydroxyhepta-2%2C4-diene-1%2C7- dioate isomerase gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2815 Tpau_2816 Tpau_2816 Tpau_2816 2914658 2915830 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mav:MAV_1802 2%2C3-dihydroxybiphenyl-1%2C2- dioxygenase gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2816 Tpau_2817 Tpau_2817 Tpau_2817 2915940 2916572 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro00766 TetR family transcriptional regulator gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2817 Tpau_2818 Tpau_2818 Tpau_2818 2916684 2917379 + Domain of unknown function DUF1994 PFAM: Domain of unknown function DUF1994~KEGG: mkm:Mkms_1983 hypothetical protein gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2818 Tpau_2819 Tpau_2819 Tpau_2819 2917363 2918148 - transcriptional regulator%2C XRE family KEGG: sco:SCO0307 DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2819 Tpau_2820 Tpau_2820 Tpau_2820 2918226 2919167 + amidohydrolase 2 PFAM: amidohydrolase 2~KEGG: bur:Bcep18194_B2954 amidohydrolase 2 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2820 Tpau_2821 Tpau_2821 Tpau_2821 2919219 2919902 - ThiJ/PfpI domain protein PFAM: ThiJ/PfpI domain protein~KEGG: putative intracellular protease/amidase gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2821 Tpau_2822 Tpau_2822 Tpau_2822 2919940 2920884 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B dTDP-4- dehydrorhamnose reductase~KEGG: vpa:VPA1564 hypothetical protein gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2822 Tpau_2823 Tpau_2823 Tpau_2823 2921062 2921976 + conserved hypothetical protein KEGG: rha:RHA1_ro03102 hypothetical protein gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2823 Tpau_2824 Tpau_2824 Tpau_2824 2921997 2923208 - transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2824 Tpau_2825 Tpau_2825 Tpau_2825 2923558 2924340 + conserved hypothetical protein KEGG: mva:Mvan_6059 hypothetical protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2825 Tpau_2826 Tpau_2826 Tpau_2826 2924337 2926079 + protein of unknown function DUF1446 PFAM: protein of unknown function DUF1446~KEGG: msm:MSMEG_5490 hypothetical protein gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2826 Tpau_2827 Tpau_2827 Tpau_2827 2926076 2927251 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rer:RER_17530 acyl-CoA dehydrogenase gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2827 Tpau_2828 Tpau_2828 Tpau_2828 2927270 2928859 + carboxyl transferase PFAM: carboxyl transferase~KEGG: rha:RHA1_ro01931 methylcrotonoyl-CoA carboxylase%2C beta chain gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2828 Tpau_2829 Tpau_2829 Tpau_2829 2928867 2930822 + Carbamoyl-phosphate synthase L chain ATP- binding protein PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B biotin/lipoyl attachment domain-containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein~KEGG: rer:RER_17550 acyl-CoA carboxylase alpha chain gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2829 Tpau_2830 Tpau_2830 Tpau_2830 2930825 2931994 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mva:Mvan_4850 acyl-CoA dehydrogenase domain- containing protein gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2830 Tpau_2831 Tpau_2831 Tpau_2831 2932003 2932791 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rer:RER_17570 enoyl-CoA hydratase gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2831 Tpau_2832 Tpau_2832 Tpau_2832 2932802 2933416 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro01927 TetR family transcriptional regulator gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2832 Tpau_2833 Tpau_2833 Tpau_2833 2933417 2935753 - DEAD/DEAH box helicase domain protein KEGG: rer:RER_24240 ATP-dependent DNA helicase RecG~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B type III restriction protein res subunit%3B nucleic acid binding OB-fold tRNA/helicase-type~SMART: DEAD-like helicase %3B helicase domain protein gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2833 Tpau_2834 Tpau_2834 Tpau_2834 2935750 2937387 - Dak phosphatase PFAM: Dak phosphatase~KEGG: rha:RHA1_ro06515 kinase related to hydroxyacetone kinase gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2834 Tpau_2835 Tpau_2835 Tpau_2835 2937586 2937777 + ribosomal protein L28 KEGG: nfa:nfa41960 50S ribosomal protein L28~TIGRFAM: ribosomal protein L28~PFAM: ribosomal protein L28 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2835 Tpau_2836 Tpau_2836 Tpau_2836 2937856 2938479 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nca:Noca_3999 regulatory protein%2C TetR gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2836 Tpau_2837 Tpau_2837 Tpau_2837 2938526 2939872 - amine oxidase PFAM: amine oxidase~KEGG: rha:RHA1_ro05327 oxidase gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2837 Tpau_2838 Tpau_2838 Tpau_2838 2939952 2940647 - uracil-DNA glycosylase KEGG: rer:RER_24200 uracil-DNA glycosylase~TIGRFAM: uracil-DNA glycosylase~PFAM: Uracil-DNA glycosylase superfamily gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2838 Tpau_2839 Tpau_2839 Tpau_2839 2940644 2941669 - thiamine-monophosphate kinase TIGRFAM: thiamine-monophosphate kinase~KEGG: svi:Svir_09190 thiamine-phosphate kinase~PFAM: AIR synthase related protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2839 Tpau_2840 Tpau_2840 Tpau_2840 2941689 2942267 + conserved hypothetical protein KEGG: rer:RER_24170 hypothetical protein gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2840 Tpau_2841 Tpau_2841 Tpau_2841 2942268 2943356 - D-alanine/D-alanine ligase TIGRFAM: D-alanine/D-alanine ligase~KEGG: nfa:nfa42050 D-alanyl-alanine synthetase A~PFAM: D-alanine--D-alanine ligase domain protein%3B ATP-dependent carboxylate-amine ligase domain protein ATP- grasp gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2841 Tpau_2842 Tpau_2842 Tpau_2842 2943400 2944431 - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) KEGG: ami:Amir_5998 glycerol-3-phosphate dehydrogenase (NAD(P)(+))~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein%3B Ketopantoate reductase ApbA/PanE domain protein gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2842 Tpau_2843 Tpau_2843 Tpau_2843 2944550 2945224 + 2-phospho-L-lactate guanylyltransferase CofC TIGRFAM: 2-phospho-L-lactate guanylyltransferase CofC~KEGG: nfa:nfa42070 hypothetical protein gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2843 Tpau_2844 Tpau_2844 Tpau_2844 2945242 2947428 + Polyphosphate kinase KEGG: rer:RER_24120 polyphosphate kinase~PFAM: Polyphosphate kinase gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2844 Tpau_2845 Tpau_2845 Tpau_2845 2947425 2948372 + putative phosphohistidine phosphatase%2C SixA PFAM: NUDIX hydrolase%3B Phosphoglycerate mutase~KEGG: rha:RHA1_ro06502 MutT family hydrolase gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2845 Tpau_2846 Tpau_2846 Tpau_2846 2948401 2949108 - histone family protein DNA-binding protein KEGG: mgi:Mflv_4225 histone family protein DNA- binding protein~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2846 Tpau_2847 Tpau_2847 Tpau_2847 2949278 2949865 - 3-isopropylmalate dehydratase%2C small subunit KEGG: rer:RER_24090 3-isopropylmalate dehydratase small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~PFAM: aconitate hydratase domain protein gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2847 Tpau_2848 Tpau_2848 Tpau_2848 2949910 2951355 - 3-isopropylmalate dehydratase%2C large subunit KEGG: nfa:nfa42120 isopropylmalate isomerase large subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit~PFAM: aconitate hydratase domain protein gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2848 Tpau_2849 Tpau_2849 Tpau_2849 2951443 2952168 + transcriptional regulator%2C IclR family KEGG: ami:Amir_6007 transcriptional regulator%2C IclR family~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2849 Tpau_2850 Tpau_2850 Tpau_2850 2952210 2952551 - conserved hypothetical protein KEGG: rer:RER_36380 hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2850 Tpau_2851 Tpau_2851 Tpau_2851 2952996 2954510 - glutamyl-tRNA synthetase KEGG: rer:RER_24040 glutamyl-tRNA synthetase~TIGRFAM: glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2851 Tpau_2852 Tpau_2852 Tpau_2852 2954561 2955880 + Carboxylesterase type B PFAM: Carboxylesterase type B~KEGG: rsa:RSal33209_1935 carboxylesterase type B gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2852 Tpau_2853 Tpau_2853 Tpau_2853 2955881 2956654 - 5-carboxymethyl-2-hydroxymuconateDelta-isomerase KEGG: nfa:nfa42170 putative hydrolase~PFAM: fumarylacetoacetate (FAA) hydrolase%3B Domain of unknown function DUF2437 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2853 Tpau_2854 Tpau_2854 Tpau_2854 2956745 2957974 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: nca:Noca_4400 major facilitator transporter gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2854 Tpau_2855 Tpau_2855 Tpau_2855 2958046 2959065 - 3-isopropylmalate dehydrogenase KEGG: cgb:cg1453 3-isopropylmalate dehydrogenase~PFAM: isocitrate/isopropylmalate dehydrogenase gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2855 Tpau_2856 Tpau_2856 Tpau_2856 2959062 2960648 - D-3-phosphoglycerate dehydrogenase KEGG: rha:RHA1_ro06489 D-3-phosphoglycerate dehydrogenase~TIGRFAM: D-3-phosphoglycerate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region%3B amino acid-binding ACT domain protein gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2856 Tpau_2857 Tpau_2857 Tpau_2857 2960688 2961953 - putative transcriptional regulator%2C PucR family KEGG: mmi:MMAR_1323 hypothetical protein gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2857 Tpau_2858 Tpau_2858 Tpau_2858 2962103 2963560 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: sma:SAV_1346 acid:CoA ligase gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2858 Tpau_2859 Tpau_2859 Tpau_2859 2963587 2965356 + conserved hypothetical protein KEGG: mmi:MMAR_1581 hypothetical protein gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2859 Tpau_2860 Tpau_2860 Tpau_2860 2965353 2966759 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: mmi:MMAR_1580 dehydrogenase gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2860 Tpau_2861 Tpau_2861 Tpau_2861 2966760 2967767 - conserved hypothetical protein KEGG: mab:MAB_0929 hypothetical protein gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2861 Tpau_2862 Tpau_2862 Tpau_2862 2967958 2968959 - ketol-acid reductoisomerase TIGRFAM: ketol-acid reductoisomerase~KEGG: nfa:nfa42300 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein%3B acetohydroxy acid isomeroreductase gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2862 Tpau_2863 Tpau_2863 Tpau_2863 2969012 2969515 - acetolactate synthase%2C small subunit KEGG: rop:ROP_65400 acetolactate synthase small subunit~TIGRFAM: acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit-like%3B amino acid-binding ACT domain protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2863 Tpau_2864 Tpau_2864 Tpau_2864 2969512 2971491 - acetolactate synthase%2C large subunit%2C biosynthetic type KEGG: rop:ROP_65390 acetolactate synthase large subunit~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type~PFAM: thiamine pyrophosphate protein TPP binding domain protein%3B thiamine pyrophosphate protein domain protein TPP-binding%3B thiamine pyrophosphate protein central region gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2864 Tpau_2865 Tpau_2865 Tpau_2865 2971797 2972300 + hypothetical protein KEGG: rop:ROP_65380 hypothetical membrane protein gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2865 Tpau_2866 Tpau_2866 Tpau_2866 2972379 2974220 + dihydroxy-acid dehydratase TIGRFAM: dihydroxy-acid dehydratase~KEGG: rer:RER_23950 dihydroxy-acid dehydratase~PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2866 Tpau_2867 Tpau_2867 Tpau_2867 2974289 2975425 - DoxX family protein PFAM: DoxX family protein~KEGG: rop:ROP_65350 hypothetical membrane protein gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2867 Tpau_2868 Tpau_2868 Tpau_2868 2975502 2976620 + conserved hypothetical protein KEGG: rop:ROP_65340 hypothetical protein gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2868 Tpau_2869 Tpau_2869 Tpau_2869 2976624 2978135 - glutamyl-tRNA(Gln) amidotransferase%2C B subunit KEGG: rer:RER_23900 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C B subunit~PFAM: GatB region%3B Asn/Gln amidotransferase%3B GatB central domain protein gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2869 Tpau_2870 Tpau_2870 Tpau_2870 2978161 2979309 - conserved hypothetical protein KEGG: mab:MAB_0652 hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2870 Tpau_2871 Tpau_2871 Tpau_2871 2979366 2980403 - phosphofructokinase TIGRFAM: phosphofructokinase~KEGG: mab:MAB_3335c 6-phosphofructokinase~PFAM: phosphofructokinase gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2871 Tpau_2872 Tpau_2872 Tpau_2872 2980458 2981114 - two component transcriptional regulator%2C LuxR family KEGG: rer:RER_23880 NarL family two-component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2%3B Bacterio-opsin activator HTH domain protein%3B sigma-70 region 4 domain protein~SMART: regulatory protein LuxR%3B response regulator receiver gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2872 Tpau_2873 Tpau_2873 Tpau_2873 2981124 2982395 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: nfa:nfa42540 putative two-component system sensor kinase gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2873 Tpau_2874 Tpau_2874 Tpau_2874 2982507 2983097 + conserved hypothetical protein KEGG: rer:RER_23860 hypothetical protein gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2874 Tpau_2875 Tpau_2875 Tpau_2875 2983094 2984290 + conserved hypothetical protein KEGG: nfa:nfa42560 hypothetical protein gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2875 Tpau_2876 Tpau_2876 Tpau_2876 2984325 2984804 + transcriptional regulator%2C BadM/Rrf2 family KEGG: sen:SACE_2977 BadM/Rrf2 family transcriptional regulator~TIGRFAM: transcriptional regulator%2C Rrf2 family~PFAM: protein of unknown function UPF0074 gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2876 Tpau_2877 Tpau_2877 Tpau_2877 2984873 2985307 + alkylhydroperoxidase like protein%2C AhpD family KEGG: fre:Franean1_2370 alkylhydroperoxidase~TIGRFAM: alkylhydroperoxidase like protein%2C AhpD family~PFAM: Carboxymuconolactone decarboxylase gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2877 Tpau_2878 Tpau_2878 Tpau_2878 2985431 2986339 + conserved hypothetical protein KEGG: mpa:MAP2795 hypothetical protein gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2878 Tpau_2879 Tpau_2879 Tpau_2879 2986399 2987898 - glutamyl-tRNA(Gln) amidotransferase%2C A subunit KEGG: mav:MAV_3859 aspartyl/glutamyl-tRNA amidotransferase subunit A~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C A subunit~PFAM: Amidase gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2879 Tpau_2880 Tpau_2880 Tpau_2880 2987901 2988197 - glutamyl-tRNA(Gln) amidotransferase%2C C subunit KEGG: rop:ROP_65260 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase C subunit gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2880 Tpau_2881 Tpau_2881 Tpau_2881 2988316 2989536 + putative transcriptional regulator%2C PucR family KEGG: rop:ROP_01020 putative CdaR family transcriptional regulator gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2881 Tpau_2882 Tpau_2882 Tpau_2882 2989553 2991016 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: rha:RHA1_ro05322 dehydrogenase gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2882 Tpau_2883 Tpau_2883 Tpau_2883 2991013 2992164 - Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: rha:RHA1_ro05321 alcohol dehydrogenase gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2883 Tpau_2884 Tpau_2884 Tpau_2884 2992161 2994584 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase%3B Enoyl- CoA hydratase/isomerase~KEGG: rha:RHA1_ro05319 CoA ligase gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2884 Tpau_2885 Tpau_2885 Tpau_2885 2994581 2994739 - conserved hypothetical protein KEGG: rha:RHA1_ro05313 hypothetical protein gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2885 Tpau_2886 Tpau_2886 Tpau_2886 2994976 2996190 + transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2886 Tpau_2887 Tpau_2887 Tpau_2887 2996171 2996836 - peptidase C26 PFAM: peptidase C26~KEGG: rha:RHA1_ro05313 hypothetical protein gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2887 Tpau_2888 Tpau_2888 Tpau_2888 2996833 2998197 - Glutamate--ammonia ligase KEGG: rha:RHA1_ro05312 glutamate--ammonia ligase~PFAM: glutamine synthetase catalytic region gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2888 Tpau_2889 Tpau_2889 Tpau_2889 2998190 2998834 - conserved hypothetical protein KEGG: rha:RHA1_ro05311 hypothetical protein gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2889 Tpau_2890 Tpau_2890 Tpau_2890 2998866 2999792 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: bur:Bcep18194_C6846 alpha/beta hydrolase gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2890 Tpau_2891 Tpau_2891 Tpau_2891 2999785 3001296 - putative monooxygenase KEGG: mab:MAB_2654 putative monooxygenase gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2891 Tpau_2892 Tpau_2892 Tpau_2892 3001425 3001970 - bifunctional deaminase-reductase domain protein PFAM: bifunctional deaminase-reductase domain protein~KEGG: mkm:Mkms_0225 deaminase-reductase domain- containing protein gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2892 Tpau_2893 Tpau_2893 Tpau_2893 3001967 3002896 - Helix-turn-helix%2C AraC domain protein SMART: Helix-turn-helix%2C AraC domain~KEGG: mkm:Mkms_0224 AraC family transcriptional regulator gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2893 Tpau_2894 Tpau_2894 Tpau_2894 3002946 3003602 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro05317 TetR family transcriptional regulator gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2894 Tpau_2895 Tpau_2895 Tpau_2895 3003814 3005112 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: rha:RHA1_ro05325 oxidoreductase gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2895 Tpau_2896 Tpau_2896 Tpau_2896 3005130 3005819 + conserved hypothetical protein KEGG: rha:RHA1_ro05326 hypothetical protein gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2896 Tpau_2897 Tpau_2897 Tpau_2897 3005794 3006402 - Antibiotic biosynthesis monooxygenase PFAM: Antibiotic biosynthesis monooxygenase~KEGG: rha:RHA1_ro06472 hypothetical protein gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2897 Tpau_2898 Tpau_2898 Tpau_2898 3006470 3006925 - hypothetical protein KEGG: rha:RHA1_ro07003 hypothetical protein gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2898 Tpau_2899 Tpau_2899 Tpau_2899 3007047 3007700 + amino acid-binding ACT domain protein PFAM: amino acid-binding ACT domain protein~KEGG: nfa:nfa42600 hypothetical protein gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2899 Tpau_2900 Tpau_2900 Tpau_2900 3007701 3009767 - DNA ligase%2C NAD-dependent SMART: NAD-dependent DNA ligase %3B BRCT domain protein~TIGRFAM: DNA ligase%2C NAD-dependent~KEGG: msm:MSMEG_2362 NAD-dependent DNA ligase LigA~PFAM: NAD-dependent DNA ligase adenylation%3B BRCT domain protein%3B helix-hairpin-helix motif%3B zinc-finger NAD- dependent DNA ligase C4-type%3B NAD-dependent DNA ligase OB- fold gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2900 Tpau_2901 Tpau_2901 Tpau_2901 3009806 3010267 - conserved hypothetical protein KEGG: bxe:Bxe_A3682 hypothetical protein gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2901 Tpau_2902 Tpau_2902 Tpau_2902 3010429 3011088 - hypothetical protein gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2902 Tpau_2903 Tpau_2903 Tpau_2903 3011098 3011955 - putative F420-dependent oxidoreductase KEGG: mpa:MAP0899c hypothetical protein~TIGRFAM: probable F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2903 Tpau_2904 Tpau_2904 Tpau_2904 3012133 3014550 + hypothetical protein KEGG: hypothetical protein gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2904 Tpau_2905 Tpau_2905 Tpau_2905 3014602 3015018 + conserved hypothetical protein KEGG: mab:MAB_3346 hypothetical protein gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2905 Tpau_2906 Tpau_2906 Tpau_2906 3014999 3015343 - large adhesin KEGG: hso:HS_1234 large adhesin gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2906 Tpau_2907 Tpau_2907 Tpau_2907 3015419 3016747 - ammonium transporter KEGG: mab:MAB_0355 ammonium transporter~TIGRFAM: ammonium transporter~PFAM: ammonium transporter gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2907 Tpau_2908 Tpau_2908 Tpau_2908 3016764 3017771 - Methionine synthase vitamin-B12 independent PFAM: Methionine synthase vitamin-B12 independent~KEGG: rer:RER_23790 hypothetical protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2908 Tpau_2909 Tpau_2909 Tpau_2909 3017774 3018871 - tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase KEGG: nfa:nfa42670 tRNA-specific 2-thiouridylase MnmA~TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase~PFAM: tRNA methyl transferase-like gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2909 Tpau_2910 Tpau_2910 Tpau_2910 3018871 3020076 - Cysteine desulfurase KEGG: rop:ROP_65190 cysteine desulfurase~PFAM: aminotransferase class V gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2910 Tpau_2911 Tpau_2911 Tpau_2911 3020129 3021010 - phospholipid/glycerol acyltransferase KEGG: mva:Mvan_2104 phospholipid/glycerol acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2911 Tpau_2912 Tpau_2912 Tpau_2912 3021013 3021816 - conserved hypothetical protein KEGG: msm:MSMEG_2355 hypothetical protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2912 Tpau_2913 Tpau_2913 Tpau_2913 3021907 3022725 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: nfa:nfa42900 hypothetical protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2913 Tpau_2914 Tpau_2914 Tpau_2914 3022790 3023332 - conserved hypothetical protein KEGG: mgi:Mflv_1048 hypothetical protein gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2914 Tpau_2915 Tpau_2915 Tpau_2915 3023412 3025592 - Endothelin-converting enzyme 1 KEGG: nfa:nfa22800 putative peptidase~PFAM: peptidase M13%3B Peptidase M13%2C neprilysin- like gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2915 Tpau_2916 Tpau_2916 Tpau_2916 3025793 3026749 - Electron transfer flavoprotein alpha subunit PFAM: Electron transfer flavoprotein alpha subunit %3B Electron transfer flavoprotein alpha/beta-subunit~KEGG: rha:RHA1_ro06463 electron transfer flavoprotein alpha-subunit gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2916 Tpau_2917 Tpau_2917 Tpau_2917 3026782 3027567 - Electron transfer flavoprotein alpha/beta- subunit PFAM: Electron transfer flavoprotein alpha/beta- subunit~KEGG: nfa:nfa42790 putative electron transfer flavoprotein beta subunit gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2917 Tpau_2918 Tpau_2918 Tpau_2918 3027774 3028520 + Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: rer:RER_23720 methyltransferase gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2918 Tpau_2919 Tpau_2919 Tpau_2919 3028517 3030055 + glycoside hydrolase family 57 PFAM: glycoside hydrolase family 57~KEGG: rer:RER_23710 hypothetical protein gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2919 Tpau_2920 Tpau_2920 Tpau_2920 3030055 3031362 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1%3B Starch synthase catalytic domain protein~KEGG: nfa:nfa42820 putative glycosyltransferase gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2920 Tpau_2921 Tpau_2921 Tpau_2921 3031431 3031811 + hypothetical protein gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2921 Tpau_2922 Tpau_2922 Tpau_2922 3031808 3032419 + conserved hypothetical protein KEGG: mab:MAB_0011c hypothetical protein gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2922 Tpau_2923 Tpau_2923 Tpau_2923 3032474 3033091 + hypothetical protein KEGG: mab:MAB_0011c hypothetical protein gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2923 Tpau_2924 Tpau_2924 Tpau_2924 3033122 3033379 + conserved hypothetical protein KEGG: mab:MAB_1268c hypothetical protein gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2924 Tpau_2925 Tpau_2925 Tpau_2925 3033373 3033897 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rha:RHA1_ro01901 hypothetical protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2925 Tpau_2926 Tpau_2926 Tpau_2926 3033885 3034652 - conserved hypothetical protein KEGG: rer:RER_23680 hypothetical protein gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2926 Tpau_2927 Tpau_2927 Tpau_2927 3034755 3036089 + conserved hypothetical protein KEGG: rha:RHA1_ro06456 hypothetical protein gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2927 Tpau_2928 Tpau_2928 Tpau_2928 3036134 3036400 + transcriptional regulator%2C XRE family KEGG: rop:ROP_04490 putative Xre family DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2928 Tpau_2929 Tpau_2929 Tpau_2929 3036420 3037187 + methionine aminopeptidase%2C type I TIGRFAM: methionine aminopeptidase%2C type I~KEGG: mkm:Mkms_3125 methionine aminopeptidase%2C type I~PFAM: peptidase M24 gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2929 Tpau_2930 Tpau_2930 Tpau_2930 3037248 3037829 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sma:SAV_7471 TetR family transcriptional regulator gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2930 Tpau_2931 Tpau_2931 Tpau_2931 3037928 3038878 + Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: rha:RHA1_ro03099 esterase/lipase gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2931 Tpau_2932 Tpau_2932 Tpau_2932 3038882 3040042 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: rop:ROP_48710 putative alanine-- oxoisovalerate aminotransferase gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2932 Tpau_2933 Tpau_2933 Tpau_2933 3040273 3040959 + Domain of unknown function DUF1868 PFAM: Domain of unknown function DUF1868~KEGG: dze:Dd1591_3572 domain of unknown function DUF1868 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2933 Tpau_2934 Tpau_2934 Tpau_2934 3040956 3042104 - conserved hypothetical protein KEGG: nfa:nfa42870 hypothetical protein gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2934 Tpau_2935 Tpau_2935 Tpau_2935 3042105 3043067 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B UbiE/COQ5 methyltransferase%3B Methyltransferase type 12~KEGG: rha:RHA1_ro06454 hypothetical protein gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2935 Tpau_2936 Tpau_2936 Tpau_2936 3043143 3043931 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rer:RER_23640 enoyl-CoA hydratase gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2936 Tpau_2937 Tpau_2937 Tpau_2937 3043955 3044638 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: rha:RHA1_ro06452 hypothetical protein gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2937 Tpau_2938 Tpau_2938 Tpau_2938 3044635 3045489 - ABC transporter related protein KEGG: rop:ROP_65040 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2938 Tpau_2939 Tpau_2939 Tpau_2939 3045539 3047662 + glycogen debranching enzyme GlgX TIGRFAM: glycogen debranching enzyme GlgX~PFAM: glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~KEGG: rha:RHA1_ro06450 isoamylase~SMART: alpha amylase catalytic sub domain gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2939 Tpau_2940 Tpau_2940 Tpau_2940 3047674 3048939 - phosphoserine phosphatase SerB TIGRFAM: phosphoserine phosphatase SerB%3B HAD- superfamily hydrolase%2C subfamily IB (PSPase-like)~KEGG: rer:RER_23580 phosphoserine phosphatase~PFAM: Haloacid dehalogenase domain protein hydrolase%3B amino acid-binding ACT domain protein%3B sucrose- 6F-phosphate phosphohydrolase%3B Haloacid dehalogenase domain protein hydrolase type 3 gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2940 Tpau_2941 Tpau_2941 Tpau_2941 3048936 3050126 - Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: sen:SACE_0205 phytase gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2941 Tpau_2942 Tpau_2942 Tpau_2942 3050233 3051978 - cytochrome c oxidase%2C subunit I TIGRFAM: cytochrome c oxidase%2C subunit I~KEGG: mva:Mvan_2082 cytochrome-c oxidase~PFAM: cytochrome c oxidase subunit I gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2942 Tpau_2943 Tpau_2943 Tpau_2943 3052256 3053173 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: rop:ROP_64970 putative ABC transporter substrate-binding protein gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2943 Tpau_2944 Tpau_2944 Tpau_2944 3053429 3054451 + conserved hypothetical protein KEGG: mab:MAB_0929 hypothetical protein gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2944 Tpau_2945 Tpau_2945 Tpau_2945 3054536 3056068 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rer:RER_56310 ferredoxin--NADP(+) reductase gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2945 Tpau_2946 Tpau_2946 Tpau_2946 3056079 3057023 + DNA polymerase LigD%2C polymerase domain protein KEGG: nfa:nfa13650 hypothetical protein~TIGRFAM: DNA polymerase LigD%2C polymerase domain protein~PFAM: DNA primase small subunit gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2946 Tpau_2947 Tpau_2947 Tpau_2947 3057084 3057578 + carbonic anhydrase PFAM: carbonic anhydrase~KEGG: rer:RER_23060 hypothetical protein gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2947 Tpau_2948 Tpau_2948 Tpau_2948 3057603 3058295 - conserved hypothetical protein KEGG: rer:RER_25700 hypothetical protein gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2948 Tpau_2949 Tpau_2949 Tpau_2949 3058300 3058800 - hypothetical protein gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2949 Tpau_2950 Tpau_2950 Tpau_2950 3058830 3059834 - Ribonucleoside-diphosphate reductase KEGG: mab:MAB_3404c ribonucleotide-diphosphate reductase subunit beta~PFAM: ribonucleotide reductase gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2950 Tpau_2951 Tpau_2951 Tpau_2951 3059965 3060714 - protein of unknown function DUF1503 PFAM: protein of unknown function DUF1503~KEGG: mab:MAB_3408c hypothetical protein gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2951 Tpau_2952 Tpau_2952 Tpau_2952 3060832 3061464 + hypothetical protein KEGG: mav:MAV_1219 hypothetical protein gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2952 Tpau_2953 Tpau_2953 Tpau_2953 3061501 3064034 - pseudogene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2953 Tpau_2954 Tpau_2954 Tpau_2954 3062138 3062330 + pseudogene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2954 Tpau_2955 Tpau_2955 Tpau_2955 3062387 3063760 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2955 Tpau_2956 Tpau_2956 Tpau_2956 3064087 3064689 + peptidase S16 lon domain protein KEGG: rer:RER_52640 hypothetical protein~PFAM: peptidase S16 lon domain protein~SMART: peptidase S16 lon domain protein gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2956 Tpau_2957 Tpau_2957 Tpau_2957 3064749 3065213 + conserved hypothetical protein KEGG: mab:MAB_4636 hypothetical protein gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2957 Tpau_2958 Tpau_2958 Tpau_2958 3065220 3065780 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mmi:MMAR_3560 transcriptional regulatory protein gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2958 Tpau_2959 Tpau_2959 Tpau_2959 3066097 3069132 + MMPL domain protein PFAM: MMPL domain protein~KEGG: mab:MAB_1137c MmpL family protein gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2959 Tpau_2960 Tpau_2960 Tpau_2960 3069209 3069718 + OHCU decarboxylase KEGG: krh:KRH_19760 hypothetical protein~TIGRFAM: OHCU decarboxylase~PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2960 Tpau_2961 Tpau_2961 Tpau_2961 3069715 3070035 + hydroxyisourate hydrolase KEGG: mmi:MMAR_4947 hypothetical protein~TIGRFAM: hydroxyisourate hydrolase~PFAM: Transthyretin gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2961 Tpau_2962 Tpau_2962 Tpau_2962 3070115 3071308 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: mva:Mvan_5278 monooxygenase%2C FAD-binding gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2962 Tpau_2963 Tpau_2963 Tpau_2963 3071309 3072130 - protein of unknown function DUF182 PFAM: protein of unknown function DUF182~KEGG: cmi:CMM_1914 hypothetical protein gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2963 Tpau_2964 Tpau_2964 Tpau_2964 3072127 3072717 - conserved hypothetical protein KEGG: mgi:Mflv_4787 hypothetical protein gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2964 Tpau_2965 Tpau_2965 Tpau_2965 3072851 3074773 + xanthine permease KEGG: msm:MSMEG_1293 xanthine/uracil permeases family protein~TIGRFAM: xanthine permease%3B uracil-xanthine permease~PFAM: Xanthine/uracil/vitamin C permease%3B Oxo-4- hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2965 Tpau_2966 Tpau_2966 Tpau_2966 3074773 3076104 + amidohydrolase PFAM: amidohydrolase%3B Amidohydrolase 3~KEGG: mva:Mvan_5279 amidohydrolase gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2966 Tpau_2967 Tpau_2967 Tpau_2967 3076106 3077566 - transcriptional regulator%2C PucR family PFAM: purine catabolism PurC domain protein~KEGG: sen:SACE_1265 regulatory protein gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2967 Tpau_2968 Tpau_2968 Tpau_2968 3077674 3081093 + aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding%3B ferredoxin%3B molybdopterin dehydrogenase FAD-binding%3B [2Fe-2S]-binding domain protein%3B aldehyde oxidase and xanthine dehydrogenase a/b hammerhead~KEGG: rha:RHA1_ro04506 xanthine dehydrogenase molybdenum binding subunit gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2968 Tpau_2969 Tpau_2969 Tpau_2969 3081207 3083390 - ribonucleoside-diphosphate reductase%2C alpha subunit TIGRFAM: ribonucleoside-diphosphate reductase%2C alpha subunit~KEGG: rer:RER_23520 ribonucleoside-diphosphate reductase alpha chain~PFAM: ribonucleotide reductase large subunit%3B Ribonucleotide reductase domain protein%3B Ribonucleotide reductase large subunit domain protein gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2969 Tpau_2970 Tpau_2970 Tpau_2970 3083387 3083851 - NrdI protein KEGG: rer:RER_23510 NrdI protein~TIGRFAM: NrdI protein~PFAM: NrdI family protein gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2970 Tpau_2971 Tpau_2971 Tpau_2971 3083855 3084103 - glutaredoxin-like protein NrdH KEGG: mab:MAB_3415c glutaredoxin-like protein NrdH~TIGRFAM: glutaredoxin-like protein NrdH~PFAM: glutaredoxin gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2971 Tpau_2972 Tpau_2972 Tpau_2972 3084457 3084990 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase%3B NAD(P)H dehydrogenase (quinone)~KEGG: mab:MAB_3417c NADPH-dependent FMN reductase gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2972 Tpau_2973 Tpau_2973 Tpau_2973 3085127 3085723 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro06435 TetR family transcriptional regulator gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2973 Tpau_2974 Tpau_2974 Tpau_2974 3085706 3086635 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_57060 putative oxidoreductase gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2974 Tpau_2975 Tpau_2975 Tpau_2975 3086712 3088103 - cell wall hydrolase/autolysin KEGG: nfa:nfa43210 hypothetical protein~PFAM: cell wall hydrolase/autolysin~SMART: cell wall hydrolase/autolysin gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2975 Tpau_2976 Tpau_2976 Tpau_2976 3088263 3089342 - cobalamin synthesis protein P47K PFAM: cobalamin synthesis protein P47K%3B cobalamin synthesis CobW domain protein~KEGG: rha:RHA1_ro06423 CobW protein gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2976 Tpau_2977 Tpau_2977 Tpau_2977 3089339 3090175 - Rhodanese domain protein KEGG: rha:RHA1_ro00857 hypothetical protein~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2977 Tpau_2978 Tpau_2978 Tpau_2978 3090262 3091281 + conserved hypothetical protein KEGG: nfa:nfa18260 hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2978 Tpau_2979 Tpau_2979 Tpau_2979 3091278 3092168 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: nfa:nfa18270 putative transporter gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2979 Tpau_2980 Tpau_2980 Tpau_2980 3092144 3092911 + ABC transporter related protein KEGG: mlo:mll9179 ABC transporter ATP-binding subunit~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2980 Tpau_2981 Tpau_2981 Tpau_2981 3092908 3095208 + sulfatase PFAM: sulfatase~KEGG: rer:RER_16070 arylsulfatase gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2981 Tpau_2982 Tpau_2982 Tpau_2982 3095304 3096221 + Taurine dioxygenase KEGG: mjl:Mjls_2528 taurine dioxygenase~PFAM: Taurine catabolism dioxygenase TauD/TfdA gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2982 Tpau_2983 Tpau_2983 Tpau_2983 3096185 3097498 - PGAP1 family protein PFAM: PGAP1 family protein~KEGG: rop:ROP_59630 hypothetical protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2983 Tpau_2984 Tpau_2984 Tpau_2984 3097541 3098845 - nucleotide sugar dehydrogenase TIGRFAM: nucleotide sugar dehydrogenase~KEGG: rop:ROP_55130 UDP-glucose 6-dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%3B UDP- glucose/GDP-mannose dehydrogenase dimerisation%3B UDP- glucose/GDP-mannose dehydrogenase gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2984 Tpau_2985 Tpau_2985 Tpau_2985 3098985 3099941 - conserved hypothetical protein KEGG: rha:RHA1_ro04737 hypothetical protein gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2985 Tpau_2986 Tpau_2986 Tpau_2986 3100013 3100459 + transcriptional regulator%2C AraC family KEGG: rop:ROP_21420 putative AraC family transcriptional regulator~PFAM: helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2986 Tpau_2987 Tpau_2987 Tpau_2987 3100469 3100915 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: fre:Franean1_5951 glyoxalase/bleomycin resistance protein/dioxygenase gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2987 Tpau_2988 Tpau_2988 Tpau_2988 3101029 3101349 + transcriptional regulator%2C ArsR family KEGG: mav:MAV_2783 ArsR family protein transcriptional regulator~PFAM: regulatory protein ArsR%3B transcriptional regulator PadR family protein~SMART: regulatory protein ArsR gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2988 Tpau_2989 Tpau_2989 Tpau_2989 3101346 3101738 + Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein%3B Polyketide cyclase/dehydrase~KEGG: mmi:MMAR_2815 hypothetical protein gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2989 Tpau_2990 Tpau_2990 Tpau_2990 3101767 3102456 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rha:RHA1_ro01753 acetyltransferase gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2990 Tpau_2991 Tpau_2991 Tpau_2991 3102453 3103268 + polysaccharide deacetylase PFAM: polysaccharide deacetylase~KEGG: nfa:nfa55250 putative polysaccharide deacetylase gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2991 Tpau_2992 Tpau_2992 Tpau_2992 3103430 3104671 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: bfa:Bfae_28500 major facilitator superfamily transporter gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2992 Tpau_2993 Tpau_2993 Tpau_2993 3104681 3105145 + NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: ami:Amir_3404 NUDIX hydrolase gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2993 Tpau_2994 Tpau_2994 Tpau_2994 3105198 3105308 - pseudogene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2994 Tpau_2995 Tpau_2995 Tpau_2995 3105354 3105599 - conserved hypothetical protein KEGG: kra:Krad_4252 hypothetical protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2995 Tpau_2996 Tpau_2996 Tpau_2996 3105710 3107701 + coenzyme A transferase PFAM: coenzyme A transferase~KEGG: tmz:Tmz1t_0549 coenzyme A transferase gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2996 Tpau_2997 Tpau_2997 Tpau_2997 3107698 3108036 + conserved hypothetical protein KEGG: rer:RER_40250 hypothetical protein gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2997 Tpau_2998 Tpau_2998 Tpau_2998 3108102 3108305 + imidazoleglycerol-phosphate synthase KEGG: psa:PST_2887 imidazoleglycerol-phosphate synthase gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2998 Tpau_2999 Tpau_2999 Tpau_2999 3108316 3109893 - alkyl hydroperoxide reductase%2C F subunit KEGG: rha:RHA1_ro03276 alkyl hydroperoxide reductase subunit F~TIGRFAM: alkyl hydroperoxide reductase%2C F subunit~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_2999 Tpau_3000 Tpau_3000 Tpau_3000 3109983 3110546 - peroxiredoxin TIGRFAM: peroxiredoxin~KEGG: rha:RHA1_ro03275 alkyl hydroperoxide reductase~PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3000 Tpau_3001 Tpau_3001 Tpau_3001 3110772 3111053 - Antibiotic biosynthesis monooxygenase PFAM: Antibiotic biosynthesis monooxygenase~KEGG: mab:MAB_3080 putative antibiotic biosynthesis monooxygenase gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3001 Tpau_3002 Tpau_3002 Tpau_3002 3111449 3112195 - conserved hypothetical protein KEGG: rer:RER_23310 hypothetical protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3002 Tpau_3003 Tpau_3003 Tpau_3003 3112233 3113873 - phosphoglucomutase%2C alpha-D-glucose phosphate- specific KEGG: msm:MSMEG_2136 phosphoglucomutase~TIGRFAM: phosphoglucomutase%2C alpha-D-glucose phosphate-specific~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase %3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3003 Tpau_3004 Tpau_3004 Tpau_3004 3113974 3115368 - gluconate transporter KEGG: rop:ROP_21910 gluconate permease~TIGRFAM: gluconate transporter~PFAM: Gluconate transporter%3B Citrate transporter gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3004 Tpau_3005 Tpau_3005 Tpau_3005 3115378 3116001 - 2-dehydro-3-deoxyphosphogluconate aldolase/4- hydroxy-2-oxoglutarate aldolase KEGG: rop:ROP_21900 putative 4-hydroxy-2- oxoglutarate/2-dehydro-3-deoxy-phosphogluconate aldolase~TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG and KHG aldolase gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3005 Tpau_3006 Tpau_3006 Tpau_3006 3115998 3117599 - Amidohydrolase 3 PFAM: Amidohydrolase 3%3B D-aminoacylase domain protein~KEGG: rop:ROP_21890 putative D-aminoacylase gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3006 Tpau_3007 Tpau_3007 Tpau_3007 3117613 3118866 - D-amino acid deaminase KEGG: rha:RHA1_ro02460 D-amino acid deaminase gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3007 Tpau_3008 Tpau_3008 Tpau_3008 3118979 3120010 + PfkB domain protein PFAM: PfkB domain protein~KEGG: rop:ROP_21870 putative carbohydrate kinase gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3008 Tpau_3009 Tpau_3009 Tpau_3009 3120007 3120753 + transcriptional regulator%2C IclR family KEGG: msm:MSMEG_3784 transcriptional regulator%2C IclR family protein~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3009 Tpau_3010 Tpau_3010 Tpau_3010 3120809 3121213 + Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: rop:ROP_21850 YjgF/YER057c/UK114 family protein gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3010 Tpau_3011 Tpau_3011 Tpau_3011 3121301 3122344 + cation diffusion facilitator family transporter KEGG: mab:MAB_0183c putative cation transporter~TIGRFAM: cation diffusion facilitator family transporter~PFAM: cation efflux protein gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3011 Tpau_3012 Tpau_3012 Tpau_3012 3122314 3123258 - lipase class 2 PFAM: lipase class 2~KEGG: rha:RHA1_ro04422 lipase gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3012 Tpau_3013 Tpau_3013 Tpau_3013 3123363 3129124 - pseudogene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3013 Tpau_3014 Tpau_3014 Tpau_3014 3124027 3125475 + plasmid pRiA4b ORF-3 family protein PFAM: plasmid pRiA4b ORF-3 family protein~KEGG: nca:Noca_0009 plasmid pRiA4b ORF-3 family protein gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3014 Tpau_3015 Tpau_3015 Tpau_3015 3125502 3125735 - hypothetical protein gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3015 Tpau_3016 Tpau_3016 Tpau_3016 3125786 3126610 - IstB domain protein ATP-binding protein PFAM: IstB domain protein ATP-binding protein~KEGG: art:Arth_1779 IstB ATP binding domain- containing protein gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3016 Tpau_3017 Tpau_3017 Tpau_3017 3126607 3128304 - transposase KEGG: art:Arth_1780 transposase gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3017 Tpau_3018 Tpau_3018 Tpau_3018 3129252 3129608 + transcriptional regulator%2C ArsR family KEGG: gdi:GDI0988 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3018 Tpau_3019 Tpau_3019 Tpau_3019 3130353 3130472 - hypothetical protein gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3019 Tpau_3020 Tpau_3020 Tpau_3020 3130583 3131062 - SsrA-binding protein KEGG: rop:ROP_64660 SsrA-binding protein~TIGRFAM: SsrA-binding protein~PFAM: SmpB protein gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3020 Tpau_3021 Tpau_3021 Tpau_3021 3131164 3132069 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: rer:RER_23110 cell division protein FtsX gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3021 Tpau_3022 Tpau_3022 Tpau_3022 3132110 3132799 - cell division ATP-binding protein FtsE TIGRFAM: cell division ATP-binding protein FtsE~PFAM: ABC transporter related~KEGG: rer:RER_23100 cell division protein FtsE~SMART: AAA ATPase gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3022 Tpau_3023 Tpau_3023 Tpau_3023 3132870 3133073 + hypothetical protein gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3023 Tpau_3024 Tpau_3024 Tpau_3024 3133306 3134235 - MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel~KEGG: mjl:Mjls_1580 MscS mechanosensitive ion channel gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3024 Tpau_3025 Tpau_3025 Tpau_3025 3134225 3135340 - peptide chain release factor 2 KEGG: nfa:nfa44880 peptide chain release factor 2~TIGRFAM: peptide chain release factor 2~PFAM: Class I peptide chain release factor%3B PCRF domain protein gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3025 Tpau_3026 Tpau_3026 Tpau_3026 3135343 3135735 - conserved hypothetical protein KEGG: nfa:nfa42620 hypothetical protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3026 Tpau_3027 Tpau_3027 Tpau_3027 3135815 3136612 + histidinol-phosphate phosphatase KEGG: rha:RHA1_ro06402 inositol-phosphate phosphatase~TIGRFAM: histidinol-phosphate phosphatase~PFAM: inositol monophosphatase gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3027 Tpau_3028 Tpau_3028 Tpau_3028 3136747 3138123 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rha:RHA1_ro06400 butyryl-CoA dehydrogenase gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3028 Tpau_3029 Tpau_3029 Tpau_3029 3138157 3139392 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: nfa:nfa44930 putative acyl-CoA dehydrogenase gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3029 Tpau_3030 Tpau_3030 Tpau_3030 3139485 3140840 + Deoxyribodipyrimidine photo-lyase KEGG: kra:Krad_3554 deoxyribodipyrimidine photo- lyase~PFAM: DNA photolyase FAD-binding%3B DNA photolyase domain protein gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3030 Tpau_3031 Tpau_3031 Tpau_3031 3141321 3141644 + Transglycosylase domain protein PFAM: Transglycosylase domain protein~KEGG: mjl:Mjls_3569 transglycosylase domain- containing protein gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3031 Tpau_3032 Tpau_3032 Tpau_3032 3141721 3142956 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mxa:MXAN_5357 RhtX/FptX family siderophore transporter gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3032 Tpau_3033 Tpau_3033 Tpau_3033 3142961 3143920 - protein of unknown function DUF81 PFAM: protein of unknown function DUF81~KEGG: tfu:Tfu_1694 hypothetical protein gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3033 Tpau_3034 Tpau_3034 Tpau_3034 3144065 3144643 - putative sugar acetyltransferase KEGG: sgr:SGR_2400 putative sugar acetyltransferase gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3034 Tpau_3035 Tpau_3035 Tpau_3035 3144709 3144861 + pseudogene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3035 Tpau_3036 Tpau_3036 Tpau_3036 3144951 3145745 - glycerophosphoryl diester phosphodiesterase PFAM: glycerophosphoryl diester phosphodiesterase~KEGG: tte:TTE0993 glycerophosphoryl diester phosphodiesterase gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3036 Tpau_3037 Tpau_3037 Tpau_3037 3146049 3149006 - protein of unknown function UPF0182 PFAM: protein of unknown function UPF0182~KEGG: rop:ROP_64500 hypothetical membrane protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3037 Tpau_3038 Tpau_3038 Tpau_3038 3149071 3149682 + conserved hypothetical protein KEGG: rop:ROP_64490 hypothetical protein gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3038 Tpau_3039 Tpau_3039 Tpau_3039 3149683 3150699 - conserved hypothetical protein KEGG: rop:ROP_64480 hypothetical protein gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3039 Tpau_3040 Tpau_3040 Tpau_3040 3150783 3152120 + conserved hypothetical protein KEGG: rer:RER_22280 hypothetical protein~TIGRFAM: conserved hypothetical protein~PFAM: Protein of unknown function DUF2342 gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3040 Tpau_3041 Tpau_3041 Tpau_3041 3152241 3153137 + conserved hypothetical protein KEGG: nfa:nfa45300 hypothetical protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3041 Tpau_3042 Tpau_3042 Tpau_3042 3153153 3154469 + ABC-1 domain protein PFAM: ABC-1 domain protein~KEGG: mab:MAB_3504 ABC transporter ATP-binding protein gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3042 Tpau_3043 Tpau_3043 Tpau_3043 3154473 3155681 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: krh:KRH_05060 putative glutaryl-CoA dehydrogenase gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3043 Tpau_3044 Tpau_3044 Tpau_3044 3155834 3156133 - transcription factor WhiB PFAM: transcription factor WhiB~KEGG: mgi:Mflv_4659 transcription factor WhiB gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3044 Tpau_3045 Tpau_3045 Tpau_3045 3156344 3156547 - hypothetical protein gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3045 Tpau_3046 Tpau_3046 Tpau_3046 3156703 3158796 - UvrD/REP helicase KEGG: mab:MAB_3511c DNA helicase II~PFAM: UvrD/REP helicase%3B HRDC domain protein~SMART: HRDC domain protein gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3046 Tpau_3047 Tpau_3047 Tpau_3047 3158843 3159250 - hypothetical protein gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3047 Tpau_3048 Tpau_3048 Tpau_3048 3159265 3159504 + glutaredoxin-like protein KEGG: mjl:Mjls_1462 glutaredoxin-like protein~TIGRFAM: glutaredoxin-like protein~PFAM: glutaredoxin gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3048 Tpau_3049 Tpau_3049 Tpau_3049 3159505 3159819 - hypothetical protein gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3049 Tpau_3050 Tpau_3050 Tpau_3050 3159823 3160728 - NUDIX hydrolase PFAM: NUDIX hydrolase%3B NADH pyrophosphatase-like~KEGG: nfa:nfa45350 NADH pyrophosphatase gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3050 Tpau_3051 Tpau_3051 Tpau_3051 3160743 3161561 + Rhodanese domain protein KEGG: krh:KRH_21880 3-mercaptopyruvate sulfurtransferase~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3051 Tpau_3052 Tpau_3052 Tpau_3052 3161566 3162777 - HNH endonuclease KEGG: mab:MAB_1907 hypothetical protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3052 Tpau_3053 Tpau_3053 Tpau_3053 3163007 3164953 - glucose-methanol-choline oxidoreductase PFAM: glucose-methanol-choline oxidoreductase%3B FAD dependent oxidoreductase~KEGG: nfa:nfa9780 putative oxidoreductase gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3053 Tpau_3054 Tpau_3054 Tpau_3054 3164958 3165971 - ABC transporter related protein KEGG: ami:Amir_0748 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3054 Tpau_3055 Tpau_3055 Tpau_3055 3165983 3167581 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: bcv:Bcav_3808 binding-protein-dependent transport systems inner membrane component gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3055 Tpau_3056 Tpau_3056 Tpau_3056 3167604 3168665 - ABC transporter%2C periplasmic binding protein%2C thiB subfamily KEGG: sen:SACE_0981 ABC transporter substrate- binding protein~TIGRFAM: ABC transporter%2C periplasmic binding protein%2C thiB subfamily~PFAM: extracellular solute-binding protein family 1 gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3056 Tpau_3057 Tpau_3057 Tpau_3057 3168670 3170037 - Protein of unknown function DUF2029 PFAM: Protein of unknown function DUF2029~KEGG: rop:ROP_59900 mannosyltransferase PimE gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3057 Tpau_3058 Tpau_3058 Tpau_3058 3170094 3170861 + Abortive infection protein PFAM: Abortive infection protein~KEGG: mab:MAB_0497 hypothetical protein gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3058 Tpau_3059 Tpau_3059 Tpau_3059 3170997 3171833 - hypothetical protein KEGG: rop:ROP_16860 hypothetical protein gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3059 Tpau_3060 Tpau_3060 Tpau_3060 3172227 3173435 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sen:SACE_4438 putative DeoR-type transcriptional regulator gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3060 Tpau_3061 Tpau_3061 Tpau_3061 3173505 3174476 + transcriptional regulator%2C LacI family KEGG: sen:SACE_4439 LacI family transcription regulator~PFAM: periplasmic binding protein/LacI transcriptional regulator~SMART: regulatory protein LacI gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3061 Tpau_3062 Tpau_3062 Tpau_3062 3174464 3175792 - protein of unknown function UPF0089 PFAM: protein of unknown function UPF0089~KEGG: mab:MAB_1278 hypothetical protein gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3062 Tpau_3063 Tpau_3063 Tpau_3063 3175789 3176696 - pseudogene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3063 Tpau_3064 Tpau_3064 Tpau_3064 3176693 3179161 - alpha-glucan phosphorylase TIGRFAM: alpha-glucan phosphorylase~KEGG: ami:Amir_6071 alpha-glucan phosphorylase~PFAM: glycosyl transferase family 35 gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3064 Tpau_3065 Tpau_3065 Tpau_3065 3179296 3180126 - helix-turn-helix domain protein SMART: helix-turn-helix domain protein~KEGG: sco:SCO2501 DNA-binding protein gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3065 Tpau_3066 Tpau_3066 Tpau_3066 3180237 3181658 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sco:SCO2502 transport protein gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3066 Tpau_3067 Tpau_3067 Tpau_3067 3181660 3182160 - transcriptional regulator%2C MarR family KEGG: mjl:Mjls_1079 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3067 Tpau_3068 Tpau_3068 Tpau_3068 3182169 3183038 - 3-hydroxyisobutyrate dehydrogenase KEGG: mkm:Mkms_1078 3-hydroxyisobutyrate dehydrogenase~TIGRFAM: 3-hydroxyisobutyrate dehydrogenase~PFAM: 6-phosphogluconate dehydrogenase NAD-binding%3B NADP oxidoreductase coenzyme F420-dependent gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3068 Tpau_3069 Tpau_3069 Tpau_3069 3183052 3184215 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mul:MUL_0836 acyl-CoA dehydrogenase%2C FadE9 gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3069 Tpau_3070 Tpau_3070 Tpau_3070 3184234 3185754 - methylmalonate-semialdehyde dehydrogenase KEGG: mav:MAV_2521 methylmalonate-semialdehyde dehydrogenase~TIGRFAM: methylmalonate-semialdehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3070 Tpau_3071 Tpau_3071 Tpau_3071 3185863 3187542 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: ami:Amir_2275 AMP-dependent synthetase and ligase gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3071 Tpau_3072 Tpau_3072 Tpau_3072 3187602 3188366 + ABC transporter related protein KEGG: rer:RER_27090 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3072 Tpau_3073 Tpau_3073 Tpau_3073 3188363 3189964 + ABC transporter permease protein KEGG: rer:RER_27080 ABC transporter permease protein gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3073 Tpau_3074 Tpau_3074 Tpau_3074 3190018 3191013 + transcriptional regulator%2C MarR family KEGG: sgr:SGR_2124 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR%3B regulatory protein MarR~SMART: regulatory protein ArsR gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3074 Tpau_3075 Tpau_3075 Tpau_3075 3191020 3191226 - hypothetical protein gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3075 Tpau_3076 Tpau_3076 Tpau_3076 3191447 3192454 + FMN-dependent alpha-hydroxy acid dehydrogenase PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase~KEGG: scl:sce7671 (S)-2-hydroxy-acid oxidase gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3076 Tpau_3077 Tpau_3077 Tpau_3077 3192525 3193163 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: sgr:SGR_5163 putative hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3077 Tpau_3078 Tpau_3078 Tpau_3078 3193231 3193800 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: kra:Krad_0794 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3078 Tpau_3079 Tpau_3079 Tpau_3079 3193797 3194807 + conserved hypothetical protein KEGG: mmi:MMAR_3543 hypothetical protein gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3079 Tpau_3080 Tpau_3080 Tpau_3080 3194804 3195811 - hypothetical protein KEGG: rer:RER_29580 hypothetical protein gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3080 Tpau_3081 Tpau_3081 Tpau_3081 3195889 3197082 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: msm:MSMEG_3594 anthranilate dioxygenase reductase gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3081 Tpau_3082 Tpau_3082 Tpau_3082 3197198 3197551 - transcriptional regulator%2C MerR family KEGG: sma:SAV_540 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3082 Tpau_3083 Tpau_3083 Tpau_3083 3197604 3198233 + NAD(P)H dehydrogenase (quinone) PFAM: NAD(P)H dehydrogenase (quinone)%3B NADPH- dependent FMN reductase~KEGG: xac:XAC2229 NAD(P)H dehydrogenase gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3083 Tpau_3084 Tpau_3084 Tpau_3084 3198282 3198911 - conserved hypothetical protein KEGG: rop:ROP_67010 hypothetical protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3084 Tpau_3085 Tpau_3085 Tpau_3085 3198985 3200184 - putative RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mjl:Mjls_3109 RNA polymerase ECF-subfamily sigma factor~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3085 Tpau_3086 Tpau_3086 Tpau_3086 3200157 3200471 - YCII-related protein PFAM: YCII-related~KEGG: krh:KRH_21960 hypothetical protein gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3086 Tpau_3087 Tpau_3087 Tpau_3087 3200623 3201315 - ThiJ/PfpI domain protein PFAM: ThiJ/PfpI domain protein~KEGG: rop:ROP_27050 ThiJ/PfpI family protein gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3087 Tpau_3088 Tpau_3088 Tpau_3088 3201407 3201841 + transcriptional regulator%2C MarR family KEGG: bcv:Bcav_0927 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3088 Tpau_3089 Tpau_3089 Tpau_3089 3201838 3202278 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: bfa:Bfae_28150 acetyltransferase gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3089 Tpau_3090 Tpau_3090 Tpau_3090 3202348 3202980 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: nca:Noca_4416 hypothetical protein gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3090 Tpau_3091 Tpau_3091 Tpau_3091 3203031 3203273 + pseudogene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3091 Tpau_3092 Tpau_3092 Tpau_3092 3203276 3203629 - conserved hypothetical protein KEGG: mmi:MMAR_0564 hypothetical protein gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3092 Tpau_3093 Tpau_3093 Tpau_3093 3203723 3204181 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein~KEGG: mav:MAV_3178 antioxidant%2C AhpC/TSA family protein gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3093 Tpau_3094 Tpau_3094 Tpau_3094 3204178 3204624 - conserved hypothetical protein KEGG: rha:RHA1_ro06736 hypothetical protein gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3094 Tpau_3095 Tpau_3095 Tpau_3095 3204629 3204976 - conserved hypothetical protein KEGG: sen:SACE_4410 hypothetical protein gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3095 Tpau_3096 Tpau_3096 Tpau_3096 3205047 3205583 - pseudogene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3096 Tpau_3097 Tpau_3097 Tpau_3097 3205564 3205998 - conserved hypothetical protein KEGG: saq:Sare_1463 hypothetical protein gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3097 Tpau_3098 Tpau_3098 Tpau_3098 3206118 3206951 - conserved hypothetical protein KEGG: stp:Strop_2862 hypothetical protein gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3098 Tpau_3099 Tpau_3099 Tpau_3099 3206984 3208459 - drug resistance transporter%2C EmrB/QacA subfamily KEGG: nfa:nfa21410 putative transporter~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3099 Tpau_3100 Tpau_3100 Tpau_3100 3208717 3209289 + protein of unknown function DUF218 PFAM: protein of unknown function DUF218~KEGG: rha:RHA1_ro02428 hypothetical protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3100 Tpau_3101 Tpau_3101 Tpau_3101 3209291 3210364 - GTP-binding protein YchF KEGG: rop:ROP_59410 putative GTP-binding protein~TIGRFAM: GTP-binding protein YchF~PFAM: Protein of unknown function DUF933%3B GTP- binding protein HSR1-related gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3101 Tpau_3102 Tpau_3102 Tpau_3102 3210448 3211428 - periplasmic binding protein/LacI transcriptional regulator PFAM: periplasmic binding protein/LacI transcriptional regulator~KEGG: pjd:Pjdr2_5327 periplasmic binding protein/LacI transcriptional regulator gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3102 Tpau_3103 Tpau_3103 Tpau_3103 3211464 3212469 - pseudogene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3103 Tpau_3104 Tpau_3104 Tpau_3104 3212469 3214004 - ABC transporter related protein KEGG: bcm:Bcenmc03_5245 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3104 Tpau_3105 Tpau_3105 Tpau_3105 3214266 3216536 + carbon starvation protein CstA PFAM: carbon starvation protein CstA~KEGG: msm:MSMEG_2259 carbon starvation protein A gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3105 Tpau_3106 Tpau_3106 Tpau_3106 3216497 3216697 + protein of unknown function DUF466 PFAM: protein of unknown function DUF466~KEGG: msm:MSMEG_2258 hypothetical protein gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3106 Tpau_3107 Tpau_3107 Tpau_3107 3216766 3219718 + pseudogene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3107 Tpau_3108 Tpau_3108 Tpau_3108 3217847 3219061 + transposase IS116/IS110/IS902 family protein PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~KEGG: sen:SACE_4185 hypothetical protein gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3108 Tpau_3109 Tpau_3109 Tpau_3109 3219715 3220224 + methylated-DNA/protein-cysteinemethyltransferase KEGG: nfa:nfa47910 putative methylated-DNA:protein- cysteine methyltransferase~TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3109 Tpau_3110 Tpau_3110 Tpau_3110 3220221 3221465 + protein of unknown function UPF0118 PFAM: protein of unknown function UPF0118~KEGG: mgi:Mflv_4850 hypothetical protein gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3110 Tpau_3111 Tpau_3111 Tpau_3111 3221502 3222587 + protein of unknown function DUF195 PFAM: protein of unknown function DUF195~KEGG: rha:RHA1_ro05872 RmuC family DNA recombination protein gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3111 Tpau_3112 Tpau_3112 Tpau_3112 3222655 3224076 + hypothetical protein KEGG: mkm:Mkms_4179 hypothetical protein gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3112 Tpau_3113 Tpau_3113 Tpau_3113 3224106 3224195 - pseudogene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3113 Tpau_3114 Tpau_3114 Tpau_3114 3224208 3225158 - hydroxymethylbutenyl pyrophosphate reductase TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase~KEGG: rop:ROP_59320 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~PFAM: LytB protein gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3114 Tpau_3115 Tpau_3115 Tpau_3115 3225219 3225836 + conserved hypothetical protein KEGG: mav:MAV_1229 hypothetical protein gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3115 Tpau_3116 Tpau_3116 Tpau_3116 3225833 3227110 + exodeoxyribonuclease VII%2C large subunit TIGRFAM: exodeoxyribonuclease VII%2C large subunit~KEGG: rer:RER_42360 exodeoxyribonuclease VII large subunit~PFAM: Exonuclease VII%2C large subunit-like%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3116 Tpau_3117 Tpau_3117 Tpau_3117 3227107 3227319 + exodeoxyribonuclease VII%2C small subunit KEGG: mmi:MMAR_4358 exodeoxyribonuclease VII small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII small subunit gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3117 Tpau_3118 Tpau_3118 Tpau_3118 3227326 3227985 - conserved hypothetical protein KEGG: mbt:JTY_1133 hypothetical protein gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3118 Tpau_3119 Tpau_3119 Tpau_3119 3228061 3229083 + fructose-1%2C6-bisphosphatase%2C class II TIGRFAM: fructose-1%2C6-bisphosphatase%2C class II~KEGG: rer:RER_42390 fructose 1%2C6-bisphosphatase class II~PFAM: GlpX family protein gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3119 Tpau_3120 Tpau_3120 Tpau_3120 3229152 3230570 + fumarate lyase PFAM: fumarate lyase%3B Fumarase C-like~KEGG: rer:RER_42400 fumarate hydratase class II gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3120 Tpau_3121 Tpau_3121 Tpau_3121 3230578 3231036 - hypothetical protein gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3121 Tpau_3122 Tpau_3122 Tpau_3122 3231240 3231896 + hypothetical protein KEGG: tde:TDE2213 hypothetical protein gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3122 Tpau_3123 Tpau_3123 Tpau_3123 3231977 3232573 + MCP methyltransferase%2C CheR-type PFAM: Methyltransferase type 12%3B Methyltransferase type 11%3B MCP methyltransferase CheR-type~KEGG: mjl:Mjls_1215 methyltransferase type 11 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3123 Tpau_3124 Tpau_3124 Tpau_3124 3232606 3234300 - hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit KEGG: nca:Noca_1061 fumarase~TIGRFAM: hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit%3B hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit~PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region%3B Fe-S type hydro-lyase tartrate/fumarate beta region gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3124 Tpau_3125 Tpau_3125 Tpau_3125 3234380 3234823 - Protein of unknown function DUF2266%2C transmembrane PFAM: Protein of unknown function DUF2266%2C transmembrane~KEGG: ret:RHE_CH00472 hypothetical protein gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3125 Tpau_3126 Tpau_3126 Tpau_3126 3234868 3236196 - conserved hypothetical protein KEGG: rha:RHA1_ro00245 hypothetical protein gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3126 Tpau_3127 Tpau_3127 Tpau_3127 3236193 3236579 - transcriptional regulator%2C PadR-like family PFAM: transcriptional regulator PadR family protein~KEGG: mjl:Mjls_5597 PadR family transcriptional regulator gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3127 Tpau_3128 Tpau_3128 Tpau_3128 3236622 3237929 - PhoH family protein KEGG: rop:ROP_59220 putative ATP-binding protein~PFAM: PhoH family protein~SMART: Nucleotide binding protein PINc gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3128 Tpau_3129 Tpau_3129 Tpau_3129 3238193 3239023 - putative fatty acid desaturase KEGG: nfa:nfa48120 putative fatty acid desaturase gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3129 Tpau_3130 Tpau_3130 Tpau_3130 3239098 3240396 - Glycine hydroxymethyltransferase KEGG: rha:RHA1_ro05859 serine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3130 Tpau_3131 Tpau_3131 Tpau_3131 3240427 3241668 - conserved hypothetical protein KEGG: nfa:nfa48160 hypothetical protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3131 Tpau_3132 Tpau_3132 Tpau_3132 3241756 3242679 + pantothenate kinase TIGRFAM: pantothenate kinase~KEGG: rop:ROP_59190 pantothenate kinase gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3132 Tpau_3133 Tpau_3133 Tpau_3133 3242703 3243317 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mab:MAB_1576 TetR family transcriptional regulator gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3133 Tpau_3134 Tpau_3134 Tpau_3134 3243340 3244344 - Protein of unknown function DUF2236 PFAM: Protein of unknown function DUF2236~KEGG: mjl:Mjls_0728 hypothetical protein gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3134 Tpau_3135 Tpau_3135 Tpau_3135 3244452 3245297 - undecaprenyl diphosphate synthase TIGRFAM: undecaprenyl diphosphate synthase~KEGG: rop:ROP_59180 short-chain Z-isoprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3135 Tpau_3136 Tpau_3136 Tpau_3136 3245340 3246125 - ABC transporter related protein KEGG: tfu:Tfu_1505 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3136 Tpau_3137 Tpau_3137 Tpau_3137 3246122 3247180 - Substrate-binding region of ABC-type glycine betaine transport system PFAM: Substrate-binding region of ABC-type glycine betaine transport system~KEGG: mgi:Mflv_0723 substrate-binding region of ABC- type glycine betaine transport system gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3137 Tpau_3138 Tpau_3138 Tpau_3138 3247177 3248037 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rer:RER_48630 ABC transporter permease protein gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3138 Tpau_3139 Tpau_3139 Tpau_3139 3248147 3248902 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B NAD- dependent epimerase/dehydratase~KEGG: ckp:ckrop_0210 putative oxidoreductase gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3139 Tpau_3140 Tpau_3140 Tpau_3140 3248949 3249497 - conserved hypothetical protein KEGG: mjl:Mjls_2341 hypothetical protein gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3140 Tpau_3141 Tpau_3141 Tpau_3141 3249507 3250568 - phospho-2-dehydro-3-deoxyheptonate aldolase TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase~KEGG: mjl:Mjls_1188 phospho-2-dehydro-3- deoxyheptonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3141 Tpau_3142 Tpau_3142 Tpau_3142 3250775 3252745 - protein of unknown function DUF255 PFAM: protein of unknown function DUF255~KEGG: nfa:nfa48210 hypothetical protein gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3142 Tpau_3143 Tpau_3143 Tpau_3143 3252763 3254667 - glycosyl transferase family 39 PFAM: glycosyl transferase family 39~KEGG: fal:FRAAL3990 putative integral membrane protein gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3143 Tpau_3144 Tpau_3144 Tpau_3144 3254732 3255031 - conserved hypothetical protein KEGG: nfa:nfa48230 hypothetical protein gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3144 Tpau_3145 Tpau_3145 Tpau_3145 3255028 3255894 - mycothiol conjugate amidase Mca KEGG: rop:ROP_59140 mycothiol S-conjugate amidase Mca~TIGRFAM: mycothiol conjugate amidase Mca~PFAM: LmbE family protein gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3145 Tpau_3146 Tpau_3146 Tpau_3146 3255947 3256384 + conserved hypothetical protein KEGG: mgi:Mflv_2049 hypothetical protein gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3146 Tpau_3147 Tpau_3147 Tpau_3147 3256381 3257151 + conserved hypothetical protein KEGG: rer:RER_03450 hypothetical protein~TIGRFAM: conserved hypothetical protein~PFAM: protein of unknown function DUF165 gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3147 Tpau_3148 Tpau_3148 Tpau_3148 3257317 3257811 + transcription elongation factor GreA KEGG: rop:ROP_59120 transcription elongation factor GreA~TIGRFAM: transcription elongation factor GreA~PFAM: transcription elongation factor GreA/GreB domain protein gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3148 Tpau_3149 Tpau_3149 Tpau_3149 3257867 3258904 - polysaccharide deacetylase PFAM: polysaccharide deacetylase~KEGG: bcv:Bcav_0113 polysaccharide deacetylase gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3149 Tpau_3150 Tpau_3150 Tpau_3150 3259052 3259897 + hypothetical protein KEGG: cai:Caci_2646 hypothetical protein gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3150 Tpau_3151 Tpau_3151 Tpau_3151 3259894 3261066 - Cystathionine gamma-synthase KEGG: rha:RHA1_ro05845 cystathionine gamma-synthase~PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein%3B aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3151 Tpau_3152 Tpau_3152 Tpau_3152 3261080 3262462 - cystathionine beta-synthase TIGRFAM: cystathionine beta-synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit%3B CBS domain containing protein~KEGG: rop:ROP_59040 cystathionine beta-synthase~SMART: CBS domain containing protein gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3152 Tpau_3153 Tpau_3153 Tpau_3153 3262533 3263450 + lipolytic protein G-D-S-L family PFAM: lipolytic protein G-D-S-L family~KEGG: mab:MAB_1193c hypothetical protein gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3153 Tpau_3154 Tpau_3154 Tpau_3154 3263556 3264455 - protein of unknown function DUF1112 PFAM: protein of unknown function DUF1112~KEGG: rer:RER_42700 hypothetical protein gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3154 Tpau_3155 Tpau_3155 Tpau_3155 3264587 3265126 - Clp domain protein PFAM: Clp domain protein~KEGG: nfa:nfa51490 putative Clp protease subunit gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3155 Tpau_3156 Tpau_3156 Tpau_3156 3265147 3265353 - conserved hypothetical protein KEGG: sen:SACE_0031 hypothetical protein gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3156 Tpau_3157 Tpau_3157 Tpau_3157 3265526 3266245 - hypothetical protein gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3157 Tpau_3158 Tpau_3158 Tpau_3158 3266356 3266922 - bifunctional deaminase-reductase domain protein PFAM: bifunctional deaminase-reductase domain protein~KEGG: sco:SCO2813 hypothetical protein gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3158 Tpau_3159 Tpau_3159 Tpau_3159 3267016 3267129 + hypothetical protein gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3159 Tpau_3160 Tpau_3160 Tpau_3160 3267212 3267526 + small multidrug resistance protein PFAM: small multidrug resistance protein~KEGG: mmi:MMAR_2872 multidrug-transport integral membrane protein Mmr-like protein gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3160 Tpau_3161 Tpau_3161 Tpau_3161 3267783 3268064 - putative short-chain dehydrogenase/reductase KEGG: mab:MAB_2236c putative short-chain dehydrogenase/reductase gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3161 Tpau_3162 Tpau_3162 Tpau_3162 3268206 3269162 - Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase~KEGG: mab:MAB_1168 hypothetical protein gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3162 Tpau_3163 Tpau_3163 Tpau_3163 3269159 3269689 - protein of unknown function DUF501 PFAM: protein of unknown function DUF501~KEGG: nfa:nfa48570 hypothetical protein gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3163 Tpau_3164 Tpau_3164 Tpau_3164 3269689 3270108 - Septum formation initiator PFAM: Septum formation initiator~KEGG: nfa:nfa48580 hypothetical protein gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3164 Tpau_3165 Tpau_3165 Tpau_3165 3270136 3271422 - enolase TIGRFAM: enolase~KEGG: nfa:nfa48590 phosphopyruvate hydratase~PFAM: enolase gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3165 Tpau_3166 Tpau_3166 Tpau_3166 3271574 3272581 + 2OG-Fe(II) oxygenase PFAM: 2OG-Fe(II) oxygenase~KEGG: mpa:MAP3695 hypothetical protein gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3166 Tpau_3167 Tpau_3167 Tpau_3167 3272578 3273000 + response regulator receiver protein KEGG: rha:RHA1_ro05908 hypothetical protein gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3167 Tpau_3168 Tpau_3168 Tpau_3168 3273117 3273476 + NADH-ubiquinone/plastoquinone oxidoreductase chain 3 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3~KEGG: rer:RER_27270 NADH-quinone oxidoreductase chain A gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3168 Tpau_3169 Tpau_3169 Tpau_3169 3273467 3274021 + NADH-quinone oxidoreductase%2C B subunit TIGRFAM: NADH-quinone oxidoreductase%2C B subunit~KEGG: nfa:nfa26660 NADH dehydrogenase subunit B~PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3169 Tpau_3170 Tpau_3170 Tpau_3170 3274018 3274728 + NADH (or F420H2) dehydrogenase%2C subunit C KEGG: nfa:nfa26650 NADH dehydrogenase subunit C~TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C~PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3170 Tpau_3171 Tpau_3171 Tpau_3171 3274725 3276005 + NADH dehydrogenase I%2C D subunit TIGRFAM: NADH dehydrogenase I%2C D subunit~KEGG: mjl:Mjls_1547 NADH dehydrogenase subunit D~PFAM: NADH-ubiquinone oxidoreductase chain 49kDa gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3171 Tpau_3172 Tpau_3172 Tpau_3172 3276002 3276715 + NADH-quinone oxidoreductase%2C E subunit KEGG: rha:RHA1_ro05913 NADH dehydrogenase subunit E~TIGRFAM: NADH-quinone oxidoreductase%2C E subunit~PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3172 Tpau_3173 Tpau_3173 Tpau_3173 3276712 3278052 + NADH-quinone oxidoreductase%2C F subunit TIGRFAM: NADH-quinone oxidoreductase%2C F subunit~KEGG: mab:MAB_2139 NADH-quinone oxidoreductase%2C F subunit NuoF~PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding%3B Soluble ligand binding domain gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3173 Tpau_3174 Tpau_3174 Tpau_3174 3278049 3280382 + NADH-quinone oxidoreductase%2C chain G KEGG: rha:RHA1_ro05915 NADH dehydrogenase subunit G~TIGRFAM: NADH-quinone oxidoreductase%2C chain G~PFAM: NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding%3B molybdopterin oxidoreductase%3B ferredoxin%3B molybdopterin oxidoreductase Fe4S4 region gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3174 Tpau_3175 Tpau_3175 Tpau_3175 3280379 3281671 + NADH dehydrogenase (quinone) KEGG: rer:RER_27200 NADH-quinone oxidoreductase chain H~PFAM: respiratory-chain NADH dehydrogenase subunit 1 gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3175 Tpau_3176 Tpau_3176 Tpau_3176 3281664 3282167 + NADH-quinone oxidoreductase%2C chain I KEGG: rer:RER_27190 NADH-quinone oxidoreductase chain I~TIGRFAM: NADH-quinone oxidoreductase%2C chain I~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3176 Tpau_3177 Tpau_3177 Tpau_3177 3282164 3282934 + NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6~KEGG: rer:RER_27180 NADH-quinone oxidoreductase chain J gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3177 Tpau_3178 Tpau_3178 Tpau_3178 3282931 3283230 + NADH-ubiquinone oxidoreductase chain 4L PFAM: NADH-ubiquinone oxidoreductase chain 4L~KEGG: rer:RER_27170 NADH-quinone oxidoreductase chain K gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3178 Tpau_3179 Tpau_3179 Tpau_3179 3283234 3285111 + proton-translocating NADH-quinone oxidoreductase%2C chain L TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain L~KEGG: mva:Mvan_1874 NADH dehydrogenase subunit L~PFAM: NADH/Ubiquinone/plastoquinone (complex I)%3B NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3179 Tpau_3180 Tpau_3180 Tpau_3180 3285108 3286583 + proton-translocating NADH-quinone oxidoreductase%2C chain M KEGG: nfa:nfa26560 NADH dehydrogenase subunit M~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain M~PFAM: NADH/Ubiquinone/plastoquinone (complex I) gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3180 Tpau_3181 Tpau_3181 Tpau_3181 3286580 3288049 + proton-translocating NADH-quinone oxidoreductase%2C chain N KEGG: rer:RER_27140 NADH-quinone oxidoreductase chain N~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N~PFAM: NADH/Ubiquinone/plastoquinone (complex I) gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3181 Tpau_3182 Tpau_3182 Tpau_3182 3288077 3288418 + hypothetical protein gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3182 Tpau_3183 Tpau_3183 Tpau_3183 3288415 3289077 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: msm:MSMEG_5424 transcriptional regulator%2C TetR family protein gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3183 Tpau_3184 Tpau_3184 Tpau_3184 3289061 3289612 - transcriptional regulator%2C XRE family KEGG: svi:Svir_15000 predicted transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3184 Tpau_3185 Tpau_3185 Tpau_3185 3289671 3290354 + AzlC family protein PFAM: AzlC family protein~KEGG: rop:ROP_70480 putative AzlC family protein gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3185 Tpau_3186 Tpau_3186 Tpau_3186 3290351 3290665 + branched-chain amino acid transport PFAM: branched-chain amino acid transport~KEGG: svi:Svir_15020 branched-chain amino acid transport protein (AzlD) gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3186 Tpau_3187 Tpau_3187 Tpau_3187 3290667 3291881 - HNH nuclease SMART: HNH nuclease~KEGG: mjl:Mjls_0290 hypothetical protein gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3187 Tpau_3188 Tpau_3188 Tpau_3188 3291956 3293350 - Triacylglycerol lipase KEGG: nfa:nfa24020 putative lipase~PFAM: secretory lipase gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3188 Tpau_3189 Tpau_3189 Tpau_3189 3293455 3297111 + transcription-repair coupling factor TIGRFAM: transcription-repair coupling factor~PFAM: transcription factor CarD%3B helicase domain protein%3B DEAD/DEAH box helicase domain protein%3B TRCF domain protein~KEGG: rha:RHA1_ro05760 transcription repair coupling factor~SMART: DEAD-like helicase %3B helicase domain protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3189 Tpau_3190 Tpau_3190 Tpau_3190 3297108 3298073 + MazG nucleotide pyrophosphohydrolase PFAM: MazG nucleotide pyrophosphohydrolase~KEGG: msm:MSMEG_5422 nucleoside triphosphate pyrophosphohydrolase gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3190 Tpau_3191 Tpau_3191 Tpau_3191 3298109 3298834 + conserved hypothetical protein KEGG: rha:RHA1_ro05776 hypothetical protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3191 Tpau_3192 Tpau_3192 Tpau_3192 3298897 3299106 + hypothetical protein gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3192 Tpau_3193 Tpau_3193 Tpau_3193 3299116 3299430 - hypothetical protein gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3193 Tpau_3194 Tpau_3194 Tpau_3194 3299700 3301151 + UDP-N-acetylglucosamine pyrophosphorylase TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase~KEGG: mva:Mvan_4782 UDP-N-acetylglucosamine pyrophosphorylase~PFAM: Nucleotidyl transferase%3B transferase hexapeptide repeat containing protein%3B 4-diphosphocytidyl- 2C-methyl-D-erythritol synthase gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3194 Tpau_3195 Tpau_3195 Tpau_3195 3301148 3302125 + ribose-phosphate pyrophosphokinase TIGRFAM: ribose-phosphate pyrophosphokinase~KEGG: rha:RHA1_ro05723 ribose-phosphate pyrophosphokinase~PFAM: phosphoribosyltransferase gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3195 Tpau_3196 Tpau_3196 Tpau_3196 3302148 3302489 + arsenate reductase KEGG: mab:MAB_0992 arsenate reductase (ArsC)~TIGRFAM: arsenate reductase~PFAM: arsenate reductase and related gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3196 Tpau_3197 Tpau_3197 Tpau_3197 3302499 3303407 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: mab:MAB_0998 LysR family transcriptional regulator gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3197 Tpau_3198 Tpau_3198 Tpau_3198 3303541 3304719 + D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: mab:MAB_0999 formate dehydrogenase gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3198 Tpau_3199 Tpau_3199 Tpau_3199 3304738 3305775 - conserved hypothetical protein KEGG: mab:MAB_0997c hypothetical protein gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3199 Tpau_3200 Tpau_3200 Tpau_3200 3305829 3306020 - hypothetical protein gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3200 Tpau_3201 Tpau_3201 Tpau_3201 3306146 3307168 + Dyp-type peroxidase family KEGG: msm:MSMEG_5829 Dyp-type peroxidase~TIGRFAM: Dyp-type peroxidase family~PFAM: Dyp-type peroxidase gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3201 Tpau_3202 Tpau_3202 Tpau_3202 3307165 3307962 + Linocin_M18 bacteriocin protein PFAM: Linocin_M18 bacteriocin protein~KEGG: mmi:MMAR_4893 29 kDa antigen Cfp29 gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3202 Tpau_3203 Tpau_3203 Tpau_3203 3308014 3310575 + ATPase AAA-2 domain protein KEGG: cai:Caci_0684 ATPase AAA-2 domain protein~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like%3B AAA ATPase central domain protein%3B Torsin%3B ATPase associated with various cellular activities AAA_5%3B Clp domain protein~SMART: AAA ATPase gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3203 Tpau_3204 Tpau_3204 Tpau_3204 3310572 3310676 + hypothetical protein gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3204 Tpau_3205 Tpau_3205 Tpau_3205 3310686 3311429 + conserved hypothetical protein KEGG: mab:MAB_2491c hypothetical protein gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3205 Tpau_3206 Tpau_3206 Tpau_3206 3311426 3312283 - dienelactone hydrolase PFAM: dienelactone hydrolase~KEGG: mab:MAB_3510c putative dienelactone hydrolase gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3206 Tpau_3207 Tpau_3207 Tpau_3207 3312286 3313104 - putative F420-dependent oxidoreductase TIGRFAM: probable F420-dependent oxidoreductase~KEGG: svi:Svir_38250 flavin-dependent oxidoreductase%2C F420-dependent methylene- tetrahydromethanopterin reductase gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3207 Tpau_3208 Tpau_3208 Tpau_3208 3313166 3313609 - Limonene-12-epoxide hydrolase PFAM: Limonene-12-epoxide hydrolase~KEGG: mmi:MMAR_1973 hypothetical protein gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3208 Tpau_3209 Tpau_3209 Tpau_3209 3313878 3314486 + ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 KEGG: rha:RHA1_ro05695 50S ribosomal protein L25/general stress protein Ctc~TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5~PFAM: Ribosomal protein L25-like gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3209 Tpau_3210 Tpau_3210 Tpau_3210 3314492 3315076 + peptidyl-tRNA hydrolase TIGRFAM: peptidyl-tRNA hydrolase~KEGG: nfa:nfa48930 peptidyl-tRNA hydrolase~PFAM: peptidyl-tRNA hydrolase gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3210 Tpau_3211 Tpau_3211 Tpau_3211 3315073 3315657 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: fal:FRAAL3380 putative aminoglycoside N6'- acetyltransferase gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3211 Tpau_3212 Tpau_3212 Tpau_3212 3315664 3317280 + peptide chain release factor 3 KEGG: nfa:nfa48950 putative peptide chain release factor~TIGRFAM: peptide chain release factor 3%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3212 Tpau_3213 Tpau_3213 Tpau_3213 3317368 3317955 + protein of unknown function DUF1349 PFAM: protein of unknown function DUF1349~KEGG: cmi:CMM_2383 hypothetical protein gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3213 Tpau_3214 Tpau_3214 Tpau_3214 3317957 3318553 - Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: fal:FRAAL4701 putative aminoacid efflux protein gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3214 Tpau_3215 Tpau_3215 Tpau_3215 3318658 3319326 + hypothetical protein KEGG: mmi:MMAR_3586 hypothetical protein gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3215 Tpau_3216 Tpau_3216 Tpau_3216 3319323 3320087 + hypothetical protein KEGG: rhi:NGR_c24260 hypothetical protein gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3216 Tpau_3217 Tpau_3217 Tpau_3217 3320293 3320562 + hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3217 Tpau_3218 Tpau_3218 Tpau_3218 3321033 3321941 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: mva:Mvan_0583 integrase catalytic subunit gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3218 Tpau_3219 Tpau_3219 Tpau_3219 3321938 3322267 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: nca:Noca_2153 transposase IS3/IS911 family protein gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3219 Tpau_3220 Tpau_3220 Tpau_3220 3322278 3322394 - pseudogene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3220 Tpau_3221 Tpau_3221 Tpau_3221 3322408 3322833 - pseudogene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3221 Tpau_3222 Tpau_3222 Tpau_3222 3322977 3323504 - hypothetical protein KEGG: mth:MTH1892 hypothetical protein gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3222 Tpau_3223 Tpau_3223 Tpau_3223 3323560 3323997 + transcriptional regulator%2C MarR family KEGG: met:M446_0049 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3223 Tpau_3224 Tpau_3224 Tpau_3224 3324119 3325129 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: fal:FRAAL2805 enoyl-CoA hydratase (enoyl-CoA hydratase/isomerase family protein) gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3224 Tpau_3225 Tpau_3225 Tpau_3225 3325203 3326336 + ABC transporter related protein KEGG: mjl:Mjls_2978 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3225 Tpau_3226 Tpau_3226 Tpau_3226 3326442 3328139 + transposase KEGG: art:Arth_1780 transposase gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3226 Tpau_3227 Tpau_3227 Tpau_3227 3328136 3328960 + IstB domain protein ATP-binding protein PFAM: IstB domain protein ATP-binding protein~KEGG: art:Arth_1779 IstB ATP binding domain- containing protein gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3227 Tpau_3228 Tpau_3228 Tpau_3228 3329011 3329244 + hypothetical protein gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3228 Tpau_3229 Tpau_3229 Tpau_3229 3329271 3330719 - plasmid pRiA4b ORF-3 family protein PFAM: plasmid pRiA4b ORF-3 family protein~KEGG: nca:Noca_0009 plasmid pRiA4b ORF-3 family protein gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3229 Tpau_3230 Tpau_3230 Tpau_3230 3330872 3331558 + ABC transporter related protein PFAM: ABC transporter related~KEGG: mjl:Mjls_2978 ABC transporter related gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3230 Tpau_3231 Tpau_3231 Tpau_3231 3331565 3332470 - 4-diphosphocytidyl-2C-methyl-D-erythritolkinase KEGG: svi:Svir_32440 4-diphosphocytidyl-2-C-methyl- D-erythritol kinase~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~PFAM: GHMP kinase%3B GHMP kinase domain protein gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3231 Tpau_3232 Tpau_3232 Tpau_3232 3332490 3333422 - dimethyladenosine transferase TIGRFAM: dimethyladenosine transferase~PFAM: ribosomal RNA adenine methylase transferase~KEGG: ami:Amir_0645 dimethyladenosine transferase~SMART: Ribosomal RNA adenine methylase transferase- like gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3232 Tpau_3233 Tpau_3233 Tpau_3233 3333438 3334895 - Transglycosylase domain protein PFAM: Transglycosylase domain protein%3B protein of unknown function DUF348%3B G5 domain protein~KEGG: rha:RHA1_ro05670 hypothetical protein gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3233 Tpau_3234 Tpau_3234 Tpau_3234 3335014 3335859 - hydrolase%2C TatD family KEGG: rha:RHA1_ro05665 TatD family deoxyribonuclease~TIGRFAM: hydrolase%2C TatD family~PFAM: TatD-related deoxyribonuclease gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3234 Tpau_3235 Tpau_3235 Tpau_3235 3335987 3337147 + hypothetical protein KEGG: nfa:nfa8570 hypothetical protein gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3235 Tpau_3236 Tpau_3236 Tpau_3236 3337165 3338715 - methionyl-tRNA synthetase KEGG: rha:RHA1_ro05663 methionyl-tRNA synthetase~TIGRFAM: methionyl-tRNA synthetase~PFAM: tRNA synthetase class I (M) gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3236 Tpau_3237 Tpau_3237 Tpau_3237 3338782 3339060 - hypothetical protein gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3237 Tpau_3238 Tpau_3238 Tpau_3238 3339181 3340296 + para-aminobenzoate synthase%2C subunit I KEGG: mjl:Mjls_4651 aminodeoxychorismate synthase component I~TIGRFAM: para-aminobenzoate synthase%2C subunit I~PFAM: Chorismate binding-like gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3238 Tpau_3239 Tpau_3239 Tpau_3239 3340329 3340796 + hypothetical protein KEGG: fal:FRAAL0526 hypothetical protein gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3239 Tpau_3240 Tpau_3240 Tpau_3240 3340772 3341623 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~KEGG: nfa:nfa49120 putative methyltransferase gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3240 Tpau_3241 Tpau_3241 Tpau_3241 3341639 3343243 + glycosyl transferase family 39 PFAM: glycosyl transferase family 39~KEGG: rop:ROP_57220 protein O-mannosyltransferase gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3241 Tpau_3242 Tpau_3242 Tpau_3242 3343251 3344456 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: rha:RHA1_ro06414 major facilitator superfamily multidrug transport protein gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3242 Tpau_3243 Tpau_3243 Tpau_3243 3344540 3344638 + K+transporting ATPase F subunit PFAM: K+transporting ATPase F subunit gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3243 Tpau_3244 Tpau_3244 Tpau_3244 3344638 3346296 + potassium-transporting ATPase%2C A subunit TIGRFAM: potassium-transporting ATPase%2C A subunit~KEGG: kra:Krad_1016 potassium-transporting ATPase%2C A subunit~PFAM: K transporting ATPase A subunit gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3244 Tpau_3245 Tpau_3245 Tpau_3245 3346293 3348320 + K+-transporting ATPase%2C B subunit KEGG: sgr:SGR_2678 potassium-transporting ATPase subunit B~TIGRFAM: K+-transporting ATPase%2C B subunit%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3245 Tpau_3246 Tpau_3246 Tpau_3246 3348339 3348935 + potassium-transporting ATPase%2C C subunit TIGRFAM: potassium-transporting ATPase%2C C subunit~KEGG: bcv:Bcav_3780 potassium-transporting ATPase%2C C subunit~PFAM: K transporting ATPase KdpC subunit gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3246 Tpau_3247 Tpau_3247 Tpau_3247 3348963 3351524 + Osmosensitive K channel His kinase sensor KEGG: sgr:SGR_1661 putative two-component system sensor kinase~PFAM: Osmosensitive K channel His kinase sensor%3B ATP-binding region ATPase domain protein%3B UspA domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3247 Tpau_3248 Tpau_3248 Tpau_3248 3351521 3352195 + two component transcriptional regulator%2C winged helix family KEGG: sma:SAV_2395 two-component system response regulator for high-affinity potassium transport system~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3248 Tpau_3249 Tpau_3249 Tpau_3249 3352205 3353179 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mpa:MAP3621c RNA polymerase factor sigma-70~TIGRFAM: RNA polymerase sigma-70 factor%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3249 Tpau_3250 Tpau_3250 Tpau_3250 3353179 3353604 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: sma:SAV_2615 hypothetical protein gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3250 Tpau_3251 Tpau_3251 Tpau_3251 3353707 3354993 - aminotransferase class-III PFAM: aminotransferase class-III~KEGG: ami:Amir_4825 aminotransferase class-III gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3251 Tpau_3252 Tpau_3252 Tpau_3252 3354990 3355946 - aminoglycoside phosphotransferase PFAM: aminoglycoside phosphotransferase~KEGG: msm:MSMEG_0270 aminoglycoside phosphotransferase gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3252 Tpau_3253 Tpau_3253 Tpau_3253 3356010 3357224 - transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3253 Tpau_3254 Tpau_3254 Tpau_3254 3357467 3357871 - transcriptional regulator%2C AsnC family KEGG: mab:MAB_3368c AsnC family transcriptional regulator~PFAM: Transcription regulator%2C AsnC-type-like~SMART: Transcription regulator%2C AsnC-type gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3254 Tpau_3255 Tpau_3255 Tpau_3255 3357935 3358627 + AzlC family protein PFAM: AzlC family protein~KEGG: mab:MAB_3369 putative integral membrane amino acid transport protein gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3255 Tpau_3256 Tpau_3256 Tpau_3256 3358620 3358946 + branched-chain amino acid transport PFAM: branched-chain amino acid transport~KEGG: mab:MAB_3370 branched chain amino acid ABC transporter gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3256 Tpau_3257 Tpau_3257 Tpau_3257 3358955 3359707 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_62750 putative hydrolase gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3257 Tpau_3258 Tpau_3258 Tpau_3258 3359764 3360651 - conserved hypothetical protein KEGG: mva:Mvan_4673 hypothetical protein gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3258 Tpau_3259 Tpau_3259 Tpau_3259 3360778 3361722 - conserved hypothetical protein KEGG: msm:MSMEG_5268 hypothetical protein gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3259 Tpau_3260 Tpau_3260 Tpau_3260 3361804 3362580 - phospholipid/glycerol acyltransferase KEGG: nfa:nfa1500 putative 1-acylglycerol-3- phosphate O-acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3260 Tpau_3261 Tpau_3261 Tpau_3261 3362651 3363292 - NAD-dependent epimerase/dehydratase family protein KEGG: sen:SACE_0813 NAD-dependent epimerase/dehydratase family protein gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3261 Tpau_3262 Tpau_3262 Tpau_3262 3363289 3363720 - DoxX family protein PFAM: DoxX family protein~KEGG: rop:ROP_57280 hypothetical membrane protein gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3262 Tpau_3263 Tpau_3263 Tpau_3263 3363822 3364160 + transcriptional regulator%2C HxlR family PFAM: helix-turn-helix HxlR type~KEGG: sma:SAV_2662 transcriptional regulator gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3263 Tpau_3264 Tpau_3264 Tpau_3264 3364160 3364939 + Extradiol ring-cleavage dioxygenase class III protein subunit B PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B~KEGG: rha:RHA1_ro01018 hypothetical protein gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3264 Tpau_3265 Tpau_3265 Tpau_3265 3365127 3366371 - conserved hypothetical protein KEGG: msm:MSMEG_5468 hypothetical protein gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3265 Tpau_3266 Tpau_3266 Tpau_3266 3366485 3367117 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rer:RER_43870 acetyltransferase gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3266 Tpau_3267 Tpau_3267 Tpau_3267 3367120 3368367 - molybdenum cofactor synthesis domain protein KEGG: rer:RER_43880 molybdopterin biosynthesis protein MoeA~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B MoeA domain protein domain IV%3B molybdopterin binding domain gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3267 Tpau_3268 Tpau_3268 Tpau_3268 3368388 3369284 - Nucleotidyl transferase PFAM: Nucleotidyl transferase~KEGG: mab:MAB_1086 putative UTP-glucose-1-phosphate uridylyltransferase (GalU) gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3268 Tpau_3269 Tpau_3269 Tpau_3269 3369337 3369897 + 5-formyltetrahydrofolate cyclo-ligase KEGG: svi:Svir_32680 5%2C10-methenyltetrahydrofolate synthetase~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3269 Tpau_3270 Tpau_3270 Tpau_3270 3369939 3370799 - conserved hypothetical protein KEGG: bfa:Bfae_27160 hypothetical protein gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3270 Tpau_3271 Tpau_3271 Tpau_3271 3370958 3371563 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mav:MAV_5227 TetR-family protein transcriptional regulator%2C putative gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3271 Tpau_3272 Tpau_3272 Tpau_3272 3371615 3371887 + regulatory protein%2C FmdB family KEGG: mab:MAB_1084c hypothetical protein~TIGRFAM: regulatory protein%2C FmdB family~PFAM: Putative regulatory protein FmdB gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3272 Tpau_3273 Tpau_3273 Tpau_3273 3371906 3372715 + conserved hypothetical protein KEGG: rer:RER_38550 hypothetical protein gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3273 Tpau_3274 Tpau_3274 Tpau_3274 3372816 3373472 + SAF domain protein PFAM: SAF domain protein~KEGG: msm:MSMEG_5481 hypothetical protein gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3274 Tpau_3275 Tpau_3275 Tpau_3275 3373482 3374480 - hypothetical protein KEGG: bcv:Bcav_0746 membrane protein gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3275 Tpau_3276 Tpau_3276 Tpau_3276 3374480 3375007 - hypothetical protein KEGG: msm:MSMEG_3892 hypothetical protein gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3276 Tpau_3277 Tpau_3277 Tpau_3277 3375078 3375524 + large conductance mechanosensitive channel protein KEGG: rha:RHA1_ro05628 large-conductance mechanosensitive channel~TIGRFAM: large conductance mechanosensitive channel protein~PFAM: large-conductance mechanosensitive channel gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3277 Tpau_3278 Tpau_3278 Tpau_3278 3375631 3375915 - hypothetical protein gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3278 Tpau_3279 Tpau_3279 Tpau_3279 3376181 3376900 - MspA family protein PFAM: MspA family protein~KEGG: rop:ROP_28660 hypothetical protein gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3279 Tpau_3280 Tpau_3280 Tpau_3280 3377233 3377940 - MspA family protein PFAM: MspA family protein~KEGG: nfa:nfa49580 hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3280 Tpau_3281 Tpau_3281 Tpau_3281 3378001 3378657 - conserved hypothetical protein KEGG: rop:ROP_56890 hypothetical protein gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3281 Tpau_3282 Tpau_3282 Tpau_3282 3379144 3379359 - conserved hypothetical protein KEGG: sen:SACE_0768 hypothetical protein gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3282 Tpau_3283 Tpau_3283 Tpau_3283 3379343 3379963 - molybdopterin binding domain protein PFAM: molybdopterin binding domain~KEGG: rha:RHA1_ro05625 molybdenum cofactor biosynthesis protein gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3283 Tpau_3284 Tpau_3284 Tpau_3284 3379960 3381222 - peptidase S1 and S6 chymotrypsin/Hap PFAM: peptidase S1 and S6 chymotrypsin/Hap~KEGG: rop:ROP_56870 S1C family peptidase gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3284 Tpau_3285 Tpau_3285 Tpau_3285 3381308 3382744 - integral membrane sensor signal transduction histidine kinase KEGG: rer:RER_43970 two-component histidine kinase MprB~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3285 Tpau_3286 Tpau_3286 Tpau_3286 3382809 3383495 - two component transcriptional regulator%2C winged helix family KEGG: rer:RER_43980 two-component response regulator MprA~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3286 Tpau_3287 Tpau_3287 Tpau_3287 3383636 3384301 - protein of unknown function UPF0126 PFAM: protein of unknown function UPF0126~KEGG: rop:ROP_56840 hypothetical membrane protein gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3287 Tpau_3288 Tpau_3288 Tpau_3288 3384384 3384557 - ribosomal protein L32 KEGG: mul:MUL_4702 50S ribosomal protein L32~TIGRFAM: ribosomal protein L32~PFAM: ribosomal L32p protein gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3288 Tpau_3289 Tpau_3289 Tpau_3289 3384636 3384899 - ribosomal protein L31 KEGG: ami:Amir_4415 ribosomal protein L31~TIGRFAM: ribosomal protein L31~PFAM: ribosomal protein L31 gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3289 Tpau_3290 Tpau_3290 Tpau_3290 3384896 3386113 - cobalamin synthesis CobW domain protein PFAM: cobalamin synthesis CobW domain protein~KEGG: rha:RHA1_ro05618 hypothetical protein gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3290 Tpau_3291 Tpau_3291 Tpau_3291 3386207 3386443 + ribosomal protein L28 KEGG: nfa:nfa49750 50S ribosomal protein L28~TIGRFAM: ribosomal protein L28~PFAM: ribosomal protein L28 gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3291 Tpau_3292 Tpau_3292 Tpau_3292 3386443 3386607 + ribosomal protein L33 KEGG: mab:MAB_0333c 50S ribosomal protein L33~TIGRFAM: ribosomal protein L33~PFAM: ribosomal protein L33 gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3292 Tpau_3293 Tpau_3293 Tpau_3293 3386607 3386912 + ribosomal protein S14 PFAM: ribosomal protein S14~KEGG: msm:MSMEG_6066 30S ribosomal protein S14 gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3293 Tpau_3294 Tpau_3294 Tpau_3294 3386918 3387157 + ribosomal protein S18 KEGG: ckp:ckrop_0479 30S ribosomal protein S18~TIGRFAM: ribosomal protein S18~PFAM: ribosomal protein S18 gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3294 Tpau_3295 Tpau_3295 Tpau_3295 3387254 3388183 + Auxin Efflux Carrier PFAM: Auxin Efflux Carrier~KEGG: rop:ROP_56750 putative AEC family transporter gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3295 Tpau_3296 Tpau_3296 Tpau_3296 3388319 3389401 + hypothetical protein KEGG: vap:Vapar_0954 putative histone H1/H5 family protein%2C HCT subfamily gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3296 Tpau_3297 Tpau_3297 Tpau_3297 3389443 3390045 + protein of unknown function DUF1707 PFAM: protein of unknown function DUF1707~KEGG: svi:Svir_05520 protein of unknown function (DUF1707) gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3297 Tpau_3298 Tpau_3298 Tpau_3298 3390046 3392037 - von Willebrand factor type A SMART: von Willebrand factor type A~KEGG: mjl:Mjls_4693 von Willebrand factor%2C type A gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3298 Tpau_3299 Tpau_3299 Tpau_3299 3392012 3393433 - magnesium chelatase subunit ChlI KEGG: rha:RHA1_ro05589 magnesium chelatase subunit ChlI gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3299 Tpau_3300 Tpau_3300 Tpau_3300 3393500 3394363 - conserved hypothetical protein KEGG: nfa:nfa30170 hypothetical protein gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3300 Tpau_3301 Tpau_3301 Tpau_3301 3394407 3394874 - Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein~KEGG: pde:Pden_4519 activator of HSP90 ATPase 1 family protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3301 Tpau_3302 Tpau_3302 Tpau_3302 3394891 3395280 + transcriptional regulator%2C ArsR family KEGG: sme:SMc02639 putative transcription regulator protein~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3302 Tpau_3303 Tpau_3303 Tpau_3303 3395353 3396192 + conserved hypothetical protein KEGG: mgi:Mflv_5265 hypothetical protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3303 Tpau_3304 Tpau_3304 Tpau_3304 3396249 3397793 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase SMART: AICARFT/IMPCHase bienzyme formylation region~TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~KEGG: rha:RHA1_ro05579 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~PFAM: AICARFT/IMPCHase bienzyme formylation region%3B MGS domain protein gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3304 Tpau_3305 Tpau_3305 Tpau_3305 3397790 3398404 - phosphoribosylglycinamide formyltransferase KEGG: rer:RER_44240 glycinamide ribonucleotide transformylase PurN~TIGRFAM: phosphoribosylglycinamide formyltransferase~PFAM: formyl transferase domain protein gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3305 Tpau_3306 Tpau_3306 Tpau_3306 3398488 3399981 - conserved hypothetical protein KEGG: rer:RER_44250 hypothetical protein gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3306 Tpau_3307 Tpau_3307 Tpau_3307 3400038 3401093 - antigen 34 kDa family protein KEGG: nfa:nfa49890 antigen 34 kDa family protein gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3307 Tpau_3308 Tpau_3308 Tpau_3308 3401151 3402050 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: sgr:SGR_674 LysR family transcriptional regulator gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3308 Tpau_3309 Tpau_3309 Tpau_3309 3402085 3403341 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rer:RER_44550 MFS transporter gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3309 Tpau_3310 Tpau_3310 Tpau_3310 3403400 3404302 - succinyl-CoA synthetase%2C alpha subunit KEGG: msm:MSMEG_5524 succinyl-CoA synthetase subunit alpha~TIGRFAM: succinyl-CoA synthetase%2C alpha subunit~PFAM: CoA-binding domain protein%3B ATP-citrate lyase/succinyl-CoA ligase gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3310 Tpau_3311 Tpau_3311 Tpau_3311 3404319 3405482 - succinyl-CoA synthetase%2C beta subunit TIGRFAM: succinyl-CoA synthetase%2C beta subunit~KEGG: mab:MAB_1056 succinyl-CoA synthetase subunit beta~PFAM: ATP-grasp domain protein%3B ATP-citrate lyase/succinyl-CoA ligase gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3311 Tpau_3312 Tpau_3312 Tpau_3312 3405792 3406580 + protein of unknown function DUF1396 PFAM: protein of unknown function DUF1396~KEGG: mbo:Mb1301c putative lipoprotein LprA gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3312 Tpau_3313 Tpau_3313 Tpau_3313 3406611 3406991 + conserved putative secreted protein KEGG: mbt:JTY_1303 conserved putative secreted protein gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3313 Tpau_3314 Tpau_3314 Tpau_3314 3407007 3407606 - chorismate mutase KEGG: mkm:Mkms_2781 chorismate mutase~TIGRFAM: chorismate mutase~PFAM: Chorismate mutase gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3314 Tpau_3315 Tpau_3315 Tpau_3315 3407649 3409511 - acetoacetyl-CoA synthase KEGG: mab:MAB_4376c putative acetoacetyl-CoA synthetase~TIGRFAM: acetoacetyl-CoA synthase~PFAM: AMP-dependent synthetase and ligase gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3315 Tpau_3316 Tpau_3316 Tpau_3316 3409516 3411141 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rer:RER_18180 fatty-acid--CoA ligase gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3316 Tpau_3317 Tpau_3317 Tpau_3317 3411161 3412003 - Citrate (pro-3S)-lyase KEGG: nfa:nfa50410 putative citrate lyase beta subunit~PFAM: HpcH/HpaI aldolase gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3317 Tpau_3318 Tpau_3318 Tpau_3318 3412004 3412531 - MaoC domain protein dehydratase PFAM: MaoC domain protein dehydratase~KEGG: mav:MAV_1673 MoaC domain-containing protein gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3318 Tpau_3319 Tpau_3319 Tpau_3319 3412528 3413676 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mmi:MMAR_3847 acyl-CoA dehydrogenase FadE19 gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3319 Tpau_3320 Tpau_3320 Tpau_3320 3413679 3415646 - Carbamoyl-phosphate synthase L chain ATP- binding protein PFAM: Carbamoyl-phosphate synthase L chain ATP- binding%3B biotin carboxylase domain protein%3B ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B biotin/lipoyl attachment domain-containing protein%3B Carbamoyl-phosphate synthetase large chain domain protein~KEGG: mgi:Mflv_2553 carbamoyl-phosphate synthase L chain%2C ATP-binding gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3320 Tpau_3321 Tpau_3321 Tpau_3321 3415653 3417185 - Methylcrotonoyl-CoA carboxylase KEGG: rha:RHA1_ro06095 fatty acid CoA carboxylase B subunit~PFAM: carboxyl transferase gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3321 Tpau_3322 Tpau_3322 Tpau_3322 3417285 3417905 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa50360 putative transcriptional regulator gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3322 Tpau_3323 Tpau_3323 Tpau_3323 3418411 3419133 + MgtC/SapB transporter PFAM: MgtC/SapB transporter~KEGG: mab:MAB_3593 Mg2+ transport P-type ATPase C MgtC gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3323 Tpau_3324 Tpau_3324 Tpau_3324 3419130 3420896 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: bln:Blon_0419 binding-protein-dependent transport systems inner membrane component gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3324 Tpau_3325 Tpau_3325 Tpau_3325 3420944 3422266 + ABC transporter related protein KEGG: bln:Blon_0418 ABC transporter related~PFAM: ABC transporter related%3B ABC nitrate/sulphonate/bicarbonate family transporter%2C ATPase subunit~SMART: AAA ATPase gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3325 Tpau_3326 Tpau_3326 Tpau_3326 3422428 3423450 + Peptidase M23 PFAM: Peptidase M23~KEGG: rer:RER_44310 hypothetical protein gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3326 Tpau_3327 Tpau_3327 Tpau_3327 3423514 3425922 - ATP-dependent DNA helicase PcrA KEGG: nfa:nfa49950 putative ATP-dependent DNA helicase~TIGRFAM: ATP-dependent DNA helicase PcrA~PFAM: UvrD/REP helicase gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3327 Tpau_3328 Tpau_3328 Tpau_3328 3426001 3426165 - pseudogene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3328 Tpau_3329 Tpau_3329 Tpau_3329 3426279 3428153 - hypothetical protein KEGG: prw:PsycPRwf_1946 hypothetical protein gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3329 Tpau_3330 Tpau_3330 Tpau_3330 3428306 3430081 - conserved hypothetical protein KEGG: rop:ROP_39000 hypothetical membrane protein gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3330 Tpau_3331 Tpau_3331 Tpau_3331 3430125 3430409 + chorismate mutase KEGG: nfa:nfa49960 hypothetical protein~TIGRFAM: chorismate mutase~PFAM: Chorismate mutase gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3331 Tpau_3332 Tpau_3332 Tpau_3332 3430506 3431303 + Stf0 sulfotransferase PFAM: Stf0 sulphotransferase~KEGG: rop:ROP_09850 hypothetical protein gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3332 Tpau_3333 Tpau_3333 Tpau_3333 3431300 3432226 + sulfate adenylyltransferase%2C small subunit TIGRFAM: sulfate adenylyltransferase%2C small subunit~KEGG: rer:RER_01270 sulfate adenylyltransferase subunit 2~PFAM: phosphoadenosine phosphosulfate reductase gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3333 Tpau_3334 Tpau_3334 Tpau_3334 3432226 3434118 + sulfate adenylyltransferase%2C large subunit TIGRFAM: sulfate adenylyltransferase%2C large subunit%3B small GTP-binding protein%3B adenylylsulfate kinase~KEGG: rer:RER_01260 bifunctional protein CysNC~PFAM: adenylylsulfate kinase%3B protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3334 Tpau_3335 Tpau_3335 Tpau_3335 3434226 3435005 + protein of unknown function DUF323 PFAM: protein of unknown function DUF323~KEGG: art:Arth_1714 hypothetical protein gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3335 Tpau_3336 Tpau_3336 Tpau_3336 3434995 3436443 - sulfatase PFAM: sulfatase~KEGG: rha:RHA1_ro01269 sulfatase gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3336 Tpau_3337 Tpau_3337 Tpau_3337 3436511 3437974 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: rha:RHA1_ro05568 succinate-semialdehyde dehydrogenase (NAD(P)+) gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3337 Tpau_3338 Tpau_3338 Tpau_3338 3438024 3439688 + Glucose-6-phosphate isomerase KEGG: rha:RHA1_ro05567 glucose-6-phosphate isomerase~PFAM: phosphoglucose isomerase (PGI) gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3338 Tpau_3339 Tpau_3339 Tpau_3339 3439691 3440836 - beta-lactamase PFAM: beta-lactamase~KEGG: stp:Strop_3984 serine-type D-Ala-D-Ala carboxypeptidase gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3339 Tpau_3340 Tpau_3340 Tpau_3340 3440833 3441054 - hypothetical protein gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3340 Tpau_3341 Tpau_3341 Tpau_3341 3441246 3442472 + HNH nuclease SMART: HNH nuclease~KEGG: mab:MAB_1907 hypothetical protein gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3341 Tpau_3342 Tpau_3342 Tpau_3342 3442477 3443214 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: nfa:nfa43220 short chain dehydrogenase gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3342 Tpau_3343 Tpau_3343 Tpau_3343 3443178 3443837 - protein of unknown function DUF161 PFAM: protein of unknown function DUF161~KEGG: rha:RHA1_ro06449 hypothetical protein gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3343 Tpau_3344 Tpau_3344 Tpau_3344 3443881 3445329 + transcriptional regulator%2C GntR family with aminotransferase domain KEGG: nfa:nfa53660 putative transcriptional regulator/aminotransferase~PFAM: regulatory protein GntR HTH%3B aminotransferase class I and II~SMART: regulatory protein GntR HTH gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3344 Tpau_3345 Tpau_3345 Tpau_3345 3445333 3445791 - hypothetical protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3345 Tpau_3346 Tpau_3346 Tpau_3346 3445952 3446572 + DoxX family protein PFAM: DoxX family protein~KEGG: kra:Krad_3171 DoxX family protein gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3346 Tpau_3347 Tpau_3347 Tpau_3347 3446658 3447920 - Dyp-type peroxidase family KEGG: mab:MAB_1160 hypothetical protein~TIGRFAM: Dyp-type peroxidase family~PFAM: Dyp-type peroxidase gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3347 Tpau_3348 Tpau_3348 Tpau_3348 3447910 3449943 - iron permease FTR1 PFAM: iron permease FTR1%3B Peptidase M75%2C Imelysin~KEGG: mab:MAB_1159 putative iron permease FTR1 gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3348 Tpau_3349 Tpau_3349 Tpau_3349 3450020 3450892 - DNA-formamidopyrimidine glycosylase KEGG: msm:MSMEG_5545 formamidopyrimidine-DNA glycosylase~PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein%3B DNA glycosylase/AP lyase%2C H2TH DNA- binding gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3349 Tpau_3350 Tpau_3350 Tpau_3350 3450915 3451667 + inositol monophosphatase PFAM: inositol monophosphatase~KEGG: cgt:cgR_0960 hypothetical protein gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3350 Tpau_3351 Tpau_3351 Tpau_3351 3451667 3452347 + Helix-turn-helix%2C AraC domain protein SMART: Helix-turn-helix%2C AraC domain~KEGG: nfa:pnf1370 putative DNA-binding protein gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3351 Tpau_3352 Tpau_3352 Tpau_3352 3452402 3453319 + fatty acid hydroxylase PFAM: fatty acid hydroxylase~KEGG: nfa:nfa53570 hypothetical protein gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3352 Tpau_3353 Tpau_3353 Tpau_3353 3453295 3454056 - precorrin-6A synthase (deacetylating) TIGRFAM: precorrin-6A synthase (deacetylating)~KEGG: cai:Caci_6988 precorrin-6A synthase (deacetylating)~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3353 Tpau_3354 Tpau_3354 Tpau_3354 3454053 3454685 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa11460 putative transcriptional regulator gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3354 Tpau_3355 Tpau_3355 Tpau_3355 3454829 3455770 + hypothetical protein KEGG: GK23094 gene product from transcript GK23094- RA gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3355 Tpau_3356 Tpau_3356 Tpau_3356 3455775 3456380 - pyridoxamine 5'-phosphate oxidase-related FMN- binding protein PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding~KEGG: mab:MAB_3653 pyridoxine 5-phosphate oxidase gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3356 Tpau_3357 Tpau_3357 Tpau_3357 3456437 3456865 + ribonuclease H PFAM: ribonuclease H~KEGG: hba:Hbal_1042 ribonuclease H gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3357 Tpau_3358 Tpau_3358 Tpau_3358 3456875 3458245 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: nfa:nfa46300 putative transporter gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3358 Tpau_3359 Tpau_3359 Tpau_3359 3458291 3459448 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: rer:RER_32190 hypothetical protein gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3359 Tpau_3360 Tpau_3360 Tpau_3360 3459576 3461159 - von Willebrand factor type A KEGG: mab:MAB_0531c hypothetical protein~PFAM: von Willebrand factor type A~SMART: von Willebrand factor type A gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3360 Tpau_3361 Tpau_3361 Tpau_3361 3461194 3461421 - hypothetical protein KEGG: nfa:nfa6780 hypothetical protein gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3361 Tpau_3362 Tpau_3362 Tpau_3362 3461431 3462621 - conserved hypothetical protein KEGG: rer:RER_45390 hypothetical protein gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3362 Tpau_3363 Tpau_3363 Tpau_3363 3462623 3463357 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rop:ROP_50970 putative enoyl-CoA hydratase gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3363 Tpau_3364 Tpau_3364 Tpau_3364 3463381 3464472 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: rer:RER_45410 oxidoreductase gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3364 Tpau_3365 Tpau_3365 Tpau_3365 3465090 3465674 + MspA family protein PFAM: MspA family protein~KEGG: rop:ROP_56890 hypothetical protein gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3365 Tpau_3366 Tpau_3366 Tpau_3366 3465705 3465920 + DNA binding domain protein%2C excisionase family TIGRFAM: DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR~KEGG: ace:Acel_0258 DNA binding domain-containing protein gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3366 Tpau_3367 Tpau_3367 Tpau_3367 3466047 3467465 - protein of unknown function DUF690 PFAM: protein of unknown function DUF690~KEGG: nfa:nfa8250 hypothetical protein gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3367 Tpau_3368 Tpau_3368 Tpau_3368 3467597 3469111 + hypothetical protein KEGG: nfa:nfa8240 hypothetical protein gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3368 Tpau_3369 Tpau_3369 Tpau_3369 3469173 3469475 - conserved hypothetical protein KEGG: cjk:jk1747 hypothetical protein gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3369 Tpau_3370 Tpau_3370 Tpau_3370 3469506 3469814 - conserved hypothetical protein KEGG: cgt:cgR_0697 hypothetical protein gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3370 Tpau_3371 Tpau_3371 Tpau_3371 3469884 3470609 - conserved hypothetical protein KEGG: nfa:nfa8210 hypothetical protein gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3371 Tpau_3372 Tpau_3372 Tpau_3372 3470606 3471616 - PPE protein PFAM: PPE protein~KEGG: nfa:nfa8200 hypothetical protein gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3372 Tpau_3373 Tpau_3373 Tpau_3373 3471619 3471930 - hypothetical protein gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3373 Tpau_3374 Tpau_3374 Tpau_3374 3472005 3473309 - conserved hypothetical protein KEGG: nfa:nfa8180 hypothetical protein gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3374 Tpau_3375 Tpau_3375 Tpau_3375 3473378 3473683 - conserved hypothetical protein KEGG: nfa:nfa8170 hypothetical protein gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3375 Tpau_3376 Tpau_3376 Tpau_3376 3473708 3474043 - conserved hypothetical protein KEGG: nfa:nfa9550 hypothetical protein gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3376 Tpau_3377 Tpau_3377 Tpau_3377 3474045 3474344 - conserved hypothetical protein KEGG: nfa:nfa8150 hypothetical protein gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3377 Tpau_3378 Tpau_3378 Tpau_3378 3474388 3475626 - hypothetical protein KEGG: nfa:nfa8520 hypothetical protein gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3378 Tpau_3379 Tpau_3379 Tpau_3379 3475645 3476295 - SNARE associated Golgi protein-related protein PFAM: SNARE associated Golgi protein~KEGG: ckp:ckrop_0881 hypothetical protein gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3379 Tpau_3380 Tpau_3380 Tpau_3380 3476415 3477236 - tRNA pseudouridine synthase A TIGRFAM: tRNA pseudouridine synthase A~KEGG: rha:RHA1_ro06164 pseudouridylate synthase~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3380 Tpau_3381 Tpau_3381 Tpau_3381 3477462 3478163 - ribosomal protein L17 KEGG: rsa:RSal33209_2116 50S ribosomal protein L17~TIGRFAM: ribosomal protein L17~PFAM: ribosomal protein L17 gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3381 Tpau_3382 Tpau_3382 Tpau_3382 3478199 3479257 - DNA-directed RNA polymerase%2C alpha subunit TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase insert%3B RNA polymerase alpha subunit domain protein%3B RNA polymerase dimerisation~KEGG: rop:ROP_62150 DNA-directed RNA polymerase alpha subunit~SMART: RNA polymerase RpoA/D/Rpb3-type gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3382 Tpau_3383 Tpau_3383 Tpau_3383 3479341 3479946 - ribosomal protein S4 TIGRFAM: ribosomal protein S4~PFAM: ribosomal protein S4%3B RNA-binding S4 domain protein~KEGG: nfa:nfa8360 30S ribosomal protein S4~SMART: RNA-binding S4 domain protein gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3383 Tpau_3384 Tpau_3384 Tpau_3384 3479968 3480381 - 30S ribosomal protein S11 KEGG: nfa:nfa8350 30S ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11~PFAM: ribosomal protein S11 gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3384 Tpau_3385 Tpau_3385 Tpau_3385 3480381 3480752 - 30S ribosomal protein S13 KEGG: nfa:nfa8340 30S ribosomal protein S13~TIGRFAM: 30S ribosomal protein S13~PFAM: ribosomal protein S13 gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3385 Tpau_3386 Tpau_3386 Tpau_3386 3480941 3481054 - ribosomal protein L36 KEGG: kse:Ksed_20630 LSU ribosomal protein L36P~TIGRFAM: ribosomal protein L36~PFAM: ribosomal protein L36 gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3386 Tpau_3387 Tpau_3387 Tpau_3387 3481290 3482012 + hypothetical protein KEGG: cgt:cgR_0900 hypothetical protein gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3387 Tpau_3388 Tpau_3388 Tpau_3388 3482088 3482309 - translation initiation factor IF-1 KEGG: mgi:Mflv_4974 translation initiation factor IF-1~TIGRFAM: translation initiation factor IF-1~PFAM: S1 IF1 family protein gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3388 Tpau_3389 Tpau_3389 Tpau_3389 3482412 3482957 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: ace:Acel_1185 NUDIX hydrolase gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3389 Tpau_3390 Tpau_3390 Tpau_3390 3483018 3484343 + O-acetylhomoserine/O-acetylserine sulfhydrylase TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~KEGG: rer:RER_20030 O-acetylhomoserine (thiol)- lyase~PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein%3B aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3390 Tpau_3391 Tpau_3391 Tpau_3391 3484354 3484446 + hypothetical protein gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3391 Tpau_3392 Tpau_3392 Tpau_3392 3484453 3485127 - conserved hypothetical protein KEGG: rer:RER_17190 hypothetical protein gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3392 Tpau_3393 Tpau_3393 Tpau_3393 3485197 3485961 - transcriptional regulator%2C MerR family KEGG: rop:ROP_35660 putative MerR family transcriptional regulator~PFAM: TipAS antibiotic-recognition domain protein%3B Transcription regulator MerR DNA binding%3B regulatory protein MerR~SMART: regulatory protein MerR gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3393 Tpau_3394 Tpau_3394 Tpau_3394 3486148 3487533 + sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter~KEGG: rer:RER_18260 C4-dicarboxylate transport protein gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3394 Tpau_3395 Tpau_3395 Tpau_3395 3487517 3488311 - methionine aminopeptidase%2C type I TIGRFAM: methionine aminopeptidase%2C type I~KEGG: nfa:nfa7960 methionine aminopeptidase~PFAM: peptidase M24 gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3395 Tpau_3396 Tpau_3396 Tpau_3396 3488308 3488853 - adenylate kinase KEGG: rer:RER_18740 adenylate kinase~TIGRFAM: adenylate kinase~PFAM: adenylate kinase gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3396 Tpau_3397 Tpau_3397 Tpau_3397 3488850 3490169 - preprotein translocase%2C SecY subunit KEGG: nfa:nfa7940 preprotein translocase subunit SecY~TIGRFAM: preprotein translocase%2C SecY subunit~PFAM: SecY protein gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3397 Tpau_3398 Tpau_3398 Tpau_3398 3490427 3490885 - ribosomal protein L15 KEGG: nfa:nfa7930 50S ribosomal protein L15~TIGRFAM: ribosomal protein L15~PFAM: ribosomal protein L15 gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3398 Tpau_3399 Tpau_3399 Tpau_3399 3490889 3491068 - ribosomal protein L30 KEGG: nfa:nfa7920 putative ribosomal protein L30~TIGRFAM: ribosomal protein L30~PFAM: ribosomal protein L30 gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3399 Tpau_3400 Tpau_3400 Tpau_3400 3491072 3491719 - ribosomal protein S5 KEGG: rop:ROP_62030 30S ribosomal protein S5~TIGRFAM: ribosomal protein S5~PFAM: Ribosomal protein S5 %3B ribosomal protein S5 domain protein gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3400 Tpau_3401 Tpau_3401 Tpau_3401 3491763 3492167 - ribosomal protein L18 KEGG: rer:RER_18690 50S ribosomal protein L18~TIGRFAM: ribosomal protein L18~PFAM: ribosomal protein L18P/L5E gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3401 Tpau_3402 Tpau_3402 Tpau_3402 3492171 3492710 - ribosomal protein L6 KEGG: rha:RHA1_ro06148 50S ribosomal protein L6~TIGRFAM: ribosomal protein L6~PFAM: Ribosomal protein L6%2C alpha-beta domain gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3402 Tpau_3403 Tpau_3403 Tpau_3403 3492724 3493122 - ribosomal protein S8 PFAM: ribosomal protein S8~KEGG: mjl:Mjls_1058 30S ribosomal protein S8 gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3403 Tpau_3404 Tpau_3404 Tpau_3404 3493591 3493971 + conserved hypothetical protein KEGG: mab:MAB_2715c hypothetical protein gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3404 Tpau_3405 Tpau_3405 Tpau_3405 3494068 3495780 - permease for cytosine/purines uracil thiamine allantoin PFAM: permease for cytosine/purines uracil thiamine allantoin~KEGG: rer:RER_04900 hypothetical protein gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3405 Tpau_3406 Tpau_3406 Tpau_3406 3495949 3496647 - putative urease accessory protein KEGG: sgr:SGR_233 putative urease accessory protein gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3406 Tpau_3407 Tpau_3407 Tpau_3407 3496648 3497400 - urease accessory protein UreG KEGG: rer:RER_47960 urease accessory protein UreG~TIGRFAM: urease accessory protein UreG~PFAM: cobalamin synthesis protein P47K gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3407 Tpau_3408 Tpau_3408 Tpau_3408 3497393 3498061 - putative urease accessory protein KEGG: sgr:SGR_235 putative urease accessory protein gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3408 Tpau_3409 Tpau_3409 Tpau_3409 3498061 3499758 - urease%2C alpha subunit TIGRFAM: urease%2C alpha subunit~KEGG: sgr:SGR_236 urease subunit alpha~PFAM: amidohydrolase%3B Urease alpha-subunit domain protein gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3409 Tpau_3410 Tpau_3410 Tpau_3410 3499758 3500096 - urease%2C beta subunit KEGG: rer:RER_47990 urease beta subunit~TIGRFAM: urease%2C beta subunit~PFAM: Urease beta subunit gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3410 Tpau_3411 Tpau_3411 Tpau_3411 3500105 3500407 - urease%2C gamma subunit TIGRFAM: urease%2C gamma subunit~KEGG: rer:RER_48000 urease gamma subunit~PFAM: Urease gamma subunit region gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3411 Tpau_3412 Tpau_3412 Tpau_3412 3500636 3502936 + TAP domain protein PFAM: TAP domain protein~KEGG: nfa:nfa55080 putative hydrolase gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3412 Tpau_3413 Tpau_3413 Tpau_3413 3502948 3503463 - OsmC family protein PFAM: OsmC family protein~KEGG: mab:MAB_0214c hypothetical protein gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3413 Tpau_3414 Tpau_3414 Tpau_3414 3503570 3504835 + hypothetical protein KEGG: hypothetical protein gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3414 Tpau_3415 Tpau_3415 Tpau_3415 3504839 3506083 - conserved hypothetical protein KEGG: mpa:MAP1971 hypothetical protein gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3415 Tpau_3416 Tpau_3416 Tpau_3416 3506178 3506852 - conserved hypothetical protein KEGG: msm:MSMEG_3344 hypothetical protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3416 Tpau_3417 Tpau_3417 Tpau_3417 3506945 3508318 - conserved hypothetical protein KEGG: rha:RHA1_ro02171 hypothetical protein gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3417 Tpau_3418 Tpau_3418 Tpau_3418 3508519 3508704 - ribosomal protein S14 PFAM: ribosomal protein S14~KEGG: rop:ROP_61990 30S ribosomal protein S14 type Z gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3418 Tpau_3419 Tpau_3419 Tpau_3419 3508708 3509271 - ribosomal protein L5 PFAM: ribosomal protein L5~KEGG: rer:RER_18640 50S ribosomal protein L5 gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3419 Tpau_3420 Tpau_3420 Tpau_3420 3509273 3509578 - ribosomal protein L24 TIGRFAM: ribosomal protein L24~PFAM: KOW domain protein~KEGG: rer:RER_18630 50S ribosomal protein L24~SMART: KOW domain protein gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3420 Tpau_3421 Tpau_3421 Tpau_3421 3509580 3509948 - ribosomal protein L14 KEGG: nfa:nfa7740 50S ribosomal protein L14~TIGRFAM: ribosomal protein L14~PFAM: ribosomal protein L14b/L23e gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3421 Tpau_3422 Tpau_3422 Tpau_3422 3510223 3510852 + conserved hypothetical protein KEGG: msm:MSMEG_3595 hypothetical protein gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3422 Tpau_3423 Tpau_3423 Tpau_3423 3510849 3514163 + AAA ATPase SMART: AAA ATPase~KEGG: mva:Mvan_1183 AAA ATPase gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3423 Tpau_3424 Tpau_3424 Tpau_3424 3514278 3515708 - DEAD/DEAH box helicase domain protein KEGG: rer:RER_23370 ATP-dependent RNA helicase~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3424 Tpau_3425 Tpau_3425 Tpau_3425 3516031 3516561 + hypothetical protein KEGG: cai:Caci_7177 hypothetical protein gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3425 Tpau_3426 Tpau_3426 Tpau_3426 3516692 3516976 - 30S ribosomal protein S17 KEGG: rop:ROP_61950 30S ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17~PFAM: ribosomal protein S17 gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3426 Tpau_3427 Tpau_3427 Tpau_3427 3516973 3517203 - ribosomal protein L29 KEGG: rop:ROP_61940 50S ribosomal protein L29~TIGRFAM: ribosomal protein L29~PFAM: ribosomal protein L29 gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3427 Tpau_3428 Tpau_3428 Tpau_3428 3517203 3517619 - ribosomal protein L16 KEGG: rer:RER_18590 50S ribosomal protein L16~TIGRFAM: ribosomal protein L16~PFAM: Ribosomal protein L10e/L16 gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3428 Tpau_3429 Tpau_3429 Tpau_3429 3517625 3518431 - ribosomal protein S3 TIGRFAM: ribosomal protein S3~PFAM: ribosomal protein S3- domain protein%3B KH type 2 domain protein%3B Ribosomal protein S3 domain~KEGG: rer:RER_18580 30S ribosomal protein S3~SMART: KH domain protein gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3429 Tpau_3430 Tpau_3430 Tpau_3430 3518434 3518844 - ribosomal protein L22 KEGG: cgt:cgR_0613 50S ribosomal protein L22~TIGRFAM: ribosomal protein L22~PFAM: ribosomal protein L22/L17 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3430 Tpau_3431 Tpau_3431 Tpau_3431 3518844 3519125 - ribosomal protein S19 KEGG: rop:ROP_61900 30S ribosomal protein S19~TIGRFAM: ribosomal protein S19~PFAM: ribosomal protein S19/S15 gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3431 Tpau_3432 Tpau_3432 Tpau_3432 3519140 3519976 - ribosomal protein L2 KEGG: rha:RHA1_ro06136 50S ribosomal protein L2~TIGRFAM: ribosomal protein L2~PFAM: ribosomal protein L2 gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3432 Tpau_3433 Tpau_3433 Tpau_3433 3519977 3520288 - Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23~KEGG: rer:RER_18540 50S ribosomal protein L23 gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3433 Tpau_3434 Tpau_3434 Tpau_3434 3520288 3520941 - ribosomal protein L4/L1e PFAM: ribosomal protein L4/L1e~KEGG: rha:RHA1_ro06134 50S ribosomal protein L4 gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3434 Tpau_3435 Tpau_3435 Tpau_3435 3520938 3521594 - 50S ribosomal protein L3 KEGG: rop:ROP_61860 50S ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3~PFAM: ribosomal protein L3 gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3435 Tpau_3436 Tpau_3436 Tpau_3436 3521615 3521920 - ribosomal protein S10 KEGG: ami:Amir_6615 ribosomal protein S10~TIGRFAM: ribosomal protein S10~PFAM: ribosomal protein S10 gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3436 Tpau_3437 Tpau_3437 Tpau_3437 3522338 3523333 + Dipeptidylaminopeptidase/acylaminoacyl-peptidase -like protein KEGG: msm:MSMEG_5171 hypothetical protein gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3437 Tpau_3438 Tpau_3438 Tpau_3438 3523340 3523906 - hypothetical protein KEGG: rsa:RSal33209_0057 hypothetical protein gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3438 Tpau_3439 Tpau_3439 Tpau_3439 3523992 3524477 + conserved hypothetical protein KEGG: rop:ROP_61840 hypothetical protein gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3439 Tpau_3440 Tpau_3440 Tpau_3440 3524623 3525330 + hypothetical protein KEGG: mav:MAV_2901 hypothetical protein gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3440 Tpau_3441 Tpau_3441 Tpau_3441 3525351 3526445 - L-carnitine dehydratase/bile acid-inducible protein F PFAM: L-carnitine dehydratase/bile acid-inducible protein F~KEGG: rer:RER_14330 alpha-methylacyl-CoA racemase gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3441 Tpau_3442 Tpau_3442 Tpau_3442 3526479 3527090 + conserved hypothetical protein KEGG: mva:Mvan_0723 hypothetical protein gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3442 Tpau_3443 Tpau_3443 Tpau_3443 3527059 3528136 - pseudogene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3443 Tpau_3444 Tpau_3444 Tpau_3444 3528313 3529788 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase~KEGG: rer:RER_34410 flavin-containing monooxygenase gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3444 Tpau_3445 Tpau_3445 Tpau_3445 3529845 3531197 + ABC-1 domain protein PFAM: ABC-1 domain protein~KEGG: nfa:nfa38150 putative ATP-binding protein gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3445 Tpau_3446 Tpau_3446 Tpau_3446 3531246 3531707 + conserved hypothetical protein KEGG: nfa:nfa21790 hypothetical protein gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3446 Tpau_3447 Tpau_3447 Tpau_3447 3531732 3532754 + ferredoxin PFAM: ferredoxin%3B oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein~KEGG: nfa:nfa50680 putative oxidoreductase gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3447 Tpau_3448 Tpau_3448 Tpau_3448 3532754 3533869 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES domain protein%3B Alcohol dehydrogenase zinc-binding domain protein~KEGG: kra:Krad_2496 alcohol dehydrogenase GroES domain protein gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3448 Tpau_3449 Tpau_3449 Tpau_3449 3533963 3535438 + conserved hypothetical protein KEGG: mab:MAB_4465 hypothetical protein gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3449 Tpau_3450 Tpau_3450 Tpau_3450 3535435 3536145 + conserved hypothetical protein KEGG: mab:MAB_4466 hypothetical protein gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3450 Tpau_3451 Tpau_3451 Tpau_3451 3536142 3536615 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: svi:Svir_21050 hypothetical protein gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3451 Tpau_3452 Tpau_3452 Tpau_3452 3536642 3537091 - conserved hypothetical protein KEGG: mab:MAB_4462c hypothetical protein gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3452 Tpau_3453 Tpau_3453 Tpau_3453 3537123 3537449 + hypothetical protein KEGG: bay:RBAM_028960 YukE gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3453 Tpau_3454 Tpau_3454 Tpau_3454 3537452 3537739 + conserved hypothetical protein KEGG: mab:MAB_4464 hypothetical protein gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3454 Tpau_3455 Tpau_3455 Tpau_3455 3537736 3538209 + hypothetical protein KEGG: mab:MAB_4461 hypothetical protein gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3455 Tpau_3456 Tpau_3456 Tpau_3456 3538206 3539621 + conserved hypothetical protein KEGG: mab:MAB_4465 hypothetical protein gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3456 Tpau_3457 Tpau_3457 Tpau_3457 3539618 3540313 + conserved hypothetical protein KEGG: mab:MAB_4466 hypothetical protein gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3457 Tpau_3458 Tpau_3458 Tpau_3458 3540318 3542912 - pseudogene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3458 Tpau_3459 Tpau_3459 Tpau_3459 3540686 3542059 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3459 Tpau_3460 Tpau_3460 Tpau_3460 3542116 3542308 - pseudogene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3460 Tpau_3461 Tpau_3461 Tpau_3461 3543009 3543167 + conserved hypothetical protein KEGG: nfa:nfa42150 hypothetical protein gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3461 Tpau_3462 Tpau_3462 Tpau_3462 3543224 3543889 - regulatory protein TetR PFAM: regulatory protein TetR~KEGG: ami:Amir_2879 regulatory protein TetR gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3462 Tpau_3463 Tpau_3463 Tpau_3463 3543965 3545095 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding%3B FAD dependent oxidoreductase~KEGG: rer:RER_19900 monooxygenase gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3463 Tpau_3464 Tpau_3464 Tpau_3464 3545149 3546033 + hypothetical protein KEGG: mmi:MMAR_1405 hypothetical protein gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3464 Tpau_3465 Tpau_3465 Tpau_3465 3546024 3546413 - hypothetical protein gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3465 Tpau_3466 Tpau_3466 Tpau_3466 3546598 3547788 - translation elongation factor Tu KEGG: nfa:nfa50750 elongation factor Tu~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain protein%3B elongation factor Tu domain 2 protein gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3466 Tpau_3467 Tpau_3467 Tpau_3467 3547926 3550031 - translation elongation factor G KEGG: rha:RHA1_ro01922 elongation factor G~TIGRFAM: translation elongation factor G%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3467 Tpau_3468 Tpau_3468 Tpau_3468 3550143 3550613 - ribosomal protein S7 KEGG: nfa:nfa50770 30S ribosomal protein S7~TIGRFAM: ribosomal protein S7~PFAM: ribosomal protein S7 gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3468 Tpau_3469 Tpau_3469 Tpau_3469 3550613 3550987 - ribosomal protein S12 KEGG: nfa:nfa50780 30S ribosomal protein S12~TIGRFAM: ribosomal protein S12~PFAM: ribosomal protein S12/S23 gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3469 Tpau_3470 Tpau_3470 Tpau_3470 3551351 3552232 - conserved hypothetical protein KEGG: mab:MAB_0395c hypothetical protein gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3470 Tpau_3471 Tpau_3471 Tpau_3471 3552242 3552553 - conserved hypothetical protein KEGG: nfa:nfa1060 hypothetical protein gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3471 Tpau_3472 Tpau_3472 Tpau_3472 3552664 3553539 - glucose-1-phosphate thymidylyltransferase KEGG: bcv:Bcav_1190 glucose-1-phosphate thymidylyltransferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3472 Tpau_3473 Tpau_3473 Tpau_3473 3553674 3554645 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: bfa:Bfae_17930 predicted hydrolase or acyltransferase of alpha/beta superfamily gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3473 Tpau_3474 Tpau_3474 Tpau_3474 3554689 3556014 - crotonyl-CoA reductase KEGG: cai:Caci_1252 crotonyl-CoA reductase~TIGRFAM: crotonyl-CoA reductase~PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3474 Tpau_3475 Tpau_3475 Tpau_3475 3556058 3556867 - Thioesterase PFAM: Thioesterase~KEGG: fra:Francci3_2412 thioesterase gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3475 Tpau_3476 Tpau_3476 Tpau_3476 3556864 3563100 - 6-deoxyerythronolide-B synthase KEGG: stp:Strop_2778 beta-ketoacyl synthase~PFAM: Beta-ketoacyl synthase %3B Acyl transferase%3B KR domain protein%3B Thioesterase%3B short-chain dehydrogenase/reductase SDR%3B phosphopantetheine-binding gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3476 Tpau_3477 Tpau_3477 Tpau_3477 3563113 3572958 - Acyl transferase PFAM: Acyl transferase%3B KR domain protein%3B Beta- ketoacyl synthase %3B short-chain dehydrogenase/reductase SDR%3B NAD-dependent epimerase/dehydratase%3B phosphopantetheine-binding~KEGG: sgr:SGR_6073 putative type-I PKS gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3477 Tpau_3478 Tpau_3478 Tpau_3478 3572955 3577676 - Acyl transferase PFAM: Acyl transferase%3B short-chain dehydrogenase/reductase SDR%3B Beta-ketoacyl synthase %3B KR domain protein%3B Erythronolide synthase docking%3B phosphopantetheine-binding%3B NAD-dependent epimerase/dehydratase~KEGG: sen:SACE_4141 type I modular polyketide synthase gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3478 Tpau_3479 Tpau_3479 Tpau_3479 3577680 3580913 - Acyl transferase PFAM: Acyl transferase%3B Beta-ketoacyl synthase %3B phosphopantetheine-binding~KEGG: sma:SAV_943 type I polyketide synthase AVES 4 gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3479 Tpau_3480 Tpau_3480 Tpau_3480 3580910 3593704 - Mycocerosate synthase.%2C 6-deoxyerythronolide-B synthase KEGG: sen:SACE_4141 type I modular polyketide synthase~PFAM: short-chain dehydrogenase/reductase SDR%3B Beta- ketoacyl synthase %3B KR domain protein%3B Acyl transferase%3B NAD-dependent epimerase/dehydratase%3B phosphopantetheine- binding gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3480 Tpau_3481 Tpau_3481 Tpau_3481 3594394 3595701 + NDP-hexose 23-dehydratase PFAM: NDP-hexose 23-dehydratase~KEGG: svi:Svir_29870 NDP-hexose 2%2C3-dehydratase gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3481 Tpau_3482 Tpau_3482 Tpau_3482 3595698 3596711 + oxidoreductase domain protein PFAM: oxidoreductase domain protein%3B Oxidoreductase domain~KEGG: stp:Strop_2218 oxidoreductase domain- containing protein gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3482 Tpau_3483 Tpau_3483 Tpau_3483 3596725 3597459 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: rlt:Rleg2_0410 NAD-dependent epimerase/dehydratase gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3483 Tpau_3484 Tpau_3484 Tpau_3484 3597663 3599984 - pseudogene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3484 Tpau_3485 Tpau_3485 Tpau_3485 3598517 3599416 - pseudogene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3485 Tpau_3486 Tpau_3486 Tpau_3486 3599416 3599718 - transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3486 Tpau_3487 Tpau_3487 Tpau_3487 3599981 3601234 - protein of unknown function DUF1205 PFAM: protein of unknown function DUF1205%3B glycosyl transferase family 28~KEGG: sen:SACE_0726 glycosyl transferase%2C NDP-D- desosamine: 3-L-mycarosyl erythronolide B gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3487 Tpau_3488 Tpau_3488 Tpau_3488 3601467 3602417 + ABC transporter related protein KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3488 Tpau_3489 Tpau_3489 Tpau_3489 3602414 3603241 + putative integral membrane protein KEGG: tfu:Tfu_1435 putative integral membrane protein gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3489 Tpau_3490 Tpau_3490 Tpau_3490 3603234 3604058 + hypothetical protein KEGG: aoe:Clos_2750 hypothetical protein gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3490 Tpau_3491 Tpau_3491 Tpau_3491 3604067 3604576 + hypothetical protein gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3491 Tpau_3492 Tpau_3492 Tpau_3492 3604580 3606175 + acyltransferase 3 PFAM: acyltransferase 3~KEGG: kra:Krad_0330 acyltransferase 3 gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3492 Tpau_3493 Tpau_3493 Tpau_3493 3606172 3606873 + MspA family protein PFAM: MspA family protein~KEGG: rop:ROP_30140 hypothetical protein gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3493 Tpau_3494 Tpau_3494 Tpau_3494 3606983 3607609 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: bfa:Bfae_17920 transcriptional regulator%2C TetR family gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3494 Tpau_3495 Tpau_3495 Tpau_3495 3607617 3608150 - putative transcriptional regulator%2C TetR family KEGG: stp:Strop_2069 regulatory protein%2C TetR gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3495 Tpau_3496 Tpau_3496 Tpau_3496 3608187 3608963 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: rer:RER_47100 ABC transporter permease protein gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3496 Tpau_3497 Tpau_3497 Tpau_3497 3608960 3609931 - ABC transporter related protein KEGG: rer:RER_47090 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3497 Tpau_3498 Tpau_3498 Tpau_3498 3610032 3610310 - Protein of unknown function DUF2277 PFAM: Protein of unknown function DUF2277~KEGG: mab:MAB_3121c hypothetical protein gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3498 Tpau_3499 Tpau_3499 Tpau_3499 3610342 3611259 - D-amino-acid oxidase KEGG: nca:Noca_1780 D-amino-acid oxidase~PFAM: FAD dependent oxidoreductase gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3499 Tpau_3500 Tpau_3500 Tpau_3500 3611252 3611812 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: fal:FRAAL0421 putative regulatory protein gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3500 Tpau_3501 Tpau_3501 Tpau_3501 3612076 3613287 + transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3501 Tpau_3502 Tpau_3502 Tpau_3502 3613369 3613791 + thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: nfa:nfa47780 hypothetical protein gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3502 Tpau_3503 Tpau_3503 Tpau_3503 3613802 3614656 + acyl-ACP thioesterase PFAM: acyl-ACP thioesterase~KEGG: nfa:nfa50880 hypothetical protein gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3503 Tpau_3504 Tpau_3504 Tpau_3504 3614737 3616473 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rha:RHA1_ro05414 major facilitator superfamily multidrug transporter gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3504 Tpau_3505 Tpau_3505 Tpau_3505 3616612 3618195 + conserved hypothetical protein KEGG: nfa:nfa25060 hypothetical protein gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3505 Tpau_3506 Tpau_3506 Tpau_3506 3618192 3618899 + protein of unknown function DUF305 PFAM: protein of unknown function DUF305~KEGG: rer:RER_11580 hypothetical protein gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3506 Tpau_3507 Tpau_3507 Tpau_3507 3618890 3619531 - two component transcriptional regulator%2C LuxR family KEGG: rop:ROP_64570 putative NarL family two- component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3507 Tpau_3508 Tpau_3508 Tpau_3508 3619528 3620658 - integral membrane sensor signal transduction histidine kinase PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~KEGG: rop:ROP_64560 putative two-component histidine kinase gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3508 Tpau_3509 Tpau_3509 Tpau_3509 3620783 3622333 + multicopper oxidase type 3 PFAM: multicopper oxidase type 3%3B multicopper oxidase type 2~KEGG: rop:ROP_64580 putative multicopper oxidase gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3509 Tpau_3510 Tpau_3510 Tpau_3510 3622330 3622848 + copper resistance protein CopC PFAM: copper resistance protein CopC~KEGG: mjl:Mjls_5431 copper resistance protein CopC gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3510 Tpau_3511 Tpau_3511 Tpau_3511 3622818 3623630 + copper resistance D domain-containing protein KEGG: mgi:Mflv_1126 copper resistance D domain- containing protein gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3511 Tpau_3512 Tpau_3512 Tpau_3512 3623634 3624389 - transcriptional regulator%2C MerR family KEGG: nfa:nfa28610 putative transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3512 Tpau_3513 Tpau_3513 Tpau_3513 3624399 3625883 - FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: nfa:nfa28620 putative monooxygenase gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3513 Tpau_3514 Tpau_3514 Tpau_3514 3625898 3626821 - conserved hypothetical protein KEGG: nfa:nfa28630 hypothetical protein gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3514 Tpau_3515 Tpau_3515 Tpau_3515 3626836 3627693 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: nfa:nfa28640 putative short chain dehydrogenase gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3515 Tpau_3516 Tpau_3516 Tpau_3516 3627693 3628679 - Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: mab:MAB_4052c putative lipase/esterase gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3516 Tpau_3517 Tpau_3517 Tpau_3517 3628768 3629808 + Oxidoreductase FAD-binding domain protein PFAM: Oxidoreductase FAD-binding domain protein%3B ferredoxin%3B oxidoreductase FAD/NAD(P)-binding domain protein~KEGG: mab:MAB_3918c putative oxidoreductase gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3517 Tpau_3518 Tpau_3518 Tpau_3518 3629801 3630460 - transcriptional regulator%2C GntR family KEGG: reu:Reut_A2447 GntR family transcriptional regulator~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3518 Tpau_3519 Tpau_3519 Tpau_3519 3630587 3631921 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: art:Arth_0094 major facilitator transporter gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3519 Tpau_3520 Tpau_3520 Tpau_3520 3631908 3633440 + Allophanate hydrolase subunit 2 KEGG: ach:Achl_0175 UreA amidolyase related protein~PFAM: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1~SMART: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1 gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3520 Tpau_3521 Tpau_3521 Tpau_3521 3633485 3634330 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: bcv:Bcav_0203 alpha/beta hydrolase fold protein gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3521 Tpau_3522 Tpau_3522 Tpau_3522 3635097 3635969 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: bcv:Bcav_4149 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3522 Tpau_3523 Tpau_3523 Tpau_3523 3636046 3636432 + conserved hypothetical protein KEGG: bcv:Bcav_4148 hypothetical protein gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3523 Tpau_3524 Tpau_3524 Tpau_3524 3636550 3636966 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase%3B 3-demethylubiquinone-9 3- methyltransferase~KEGG: aau:AAur_2201 putative glyoxalase family protein gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3524 Tpau_3525 Tpau_3525 Tpau_3525 3637067 3638320 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: mgi:Mflv_3310 glycosyl transferase%2C group 1 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3525 Tpau_3526 Tpau_3526 Tpau_3526 3638234 3639301 - ABC transporter related protein KEGG: rha:RHA1_ro05117 ABC sugar transporter%2C ATP- binding component~PFAM: ABC transporter related%3B TOBE domain protein%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3526 Tpau_3527 Tpau_3527 Tpau_3527 3639335 3640645 - extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: rha:RHA1_ro05116 ABC sugar transporter%2C solute-binding component gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3527 Tpau_3528 Tpau_3528 Tpau_3528 3640699 3641532 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rha:RHA1_ro05115 ABC sugar transporter%2C permease component gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3528 Tpau_3529 Tpau_3529 Tpau_3529 3641529 3642464 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rer:RER_49680 ABC transporter permease protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3529 Tpau_3530 Tpau_3530 Tpau_3530 3642745 3642942 + hypothetical protein gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3530 Tpau_3531 Tpau_3531 Tpau_3531 3642939 3643898 + ABC transporter related protein KEGG: rer:RER_59620 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3531 Tpau_3532 Tpau_3532 Tpau_3532 3643895 3644728 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: cef:CE1020 hypothetical protein gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3532 Tpau_3533 Tpau_3533 Tpau_3533 3644770 3645879 + histidine kinase dimerization and phosphoacceptor region PFAM: histidine kinase dimerisation and phosphoacceptor region~KEGG: rer:RER_59600 two-component histidine kinase gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3533 Tpau_3534 Tpau_3534 Tpau_3534 3645876 3646496 + two component transcriptional regulator%2C LuxR family KEGG: rer:RER_59590 NarL family two-component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3534 Tpau_3535 Tpau_3535 Tpau_3535 3646691 3647680 + fatty acid desaturase type 2 PFAM: fatty acid desaturase type 2~KEGG: rop:ROP_49510 acyl-[acyl-carrier-protein] desaturase DesA1 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3535 Tpau_3536 Tpau_3536 Tpau_3536 3647760 3648764 + fatty acid desaturase type 2 PFAM: fatty acid desaturase type 2~KEGG: nfa:nfa6080 putative fatty acid desaturase gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3536 Tpau_3537 Tpau_3537 Tpau_3537 3648839 3650029 + TIM-barrel protein%2C nifR3 family KEGG: mmi:MMAR_4857 transcriptional regulator~TIGRFAM: TIM-barrel protein%2C nifR3 family~PFAM: dihydrouridine synthase DuS gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3537 Tpau_3538 Tpau_3538 Tpau_3538 3650107 3650769 + phosphate uptake regulator%2C PhoU KEGG: mva:Mvan_5088 phosphate uptake regulator%2C PhoU~TIGRFAM: phosphate transport system regulatory protein PhoU~PFAM: PhoU family protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3538 Tpau_3539 Tpau_3539 Tpau_3539 3650776 3651891 - Forkhead-associated protein PFAM: Forkhead-associated protein~KEGG: nfa:nfa8620 hypothetical protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3539 Tpau_3540 Tpau_3540 Tpau_3540 3651972 3652748 - phosphate ABC transporter%2C ATPase subunit TIGRFAM: phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~KEGG: rop:ROP_49470 phosphate ABC transporter ATP- binding protein~SMART: AAA ATPase gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3540 Tpau_3541 Tpau_3541 Tpau_3541 3652763 3653677 - phosphate ABC transporter%2C inner membrane subunit PstA KEGG: mab:MAB_4850c phosphate ABC transporter permease~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: binding-protein-dependent transport systems inner membrane component gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3541 Tpau_3542 Tpau_3542 Tpau_3542 3653674 3654720 - phosphate ABC transporter%2C inner membrane subunit PstC KEGG: nfa:nfa6010 putative phosphate transport system permease protein~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: binding-protein-dependent transport systems inner membrane component gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3542 Tpau_3543 Tpau_3543 Tpau_3543 3654802 3655926 - phosphate ABC transporter%2C periplasmic phosphate- binding protein KEGG: mab:MAB_4852c phosphate ABC transporter periplasmic-binding protein~TIGRFAM: phosphate ABC transporter%2C periplasmic phosphate-binding protein~PFAM: extracellular solute-binding protein family 1 gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3543 Tpau_3544 Tpau_3544 Tpau_3544 3656055 3656933 - mycothiol biosynthesis acetyltransferase KEGG: nfa:nfa5990 putative acetyltransferase~TIGRFAM: mycothiol biosynthesis acetyltransferase~PFAM: GCN5-related N-acetyltransferase gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3544 Tpau_3545 Tpau_3545 Tpau_3545 3656933 3657664 - putative two component transcriptional regulator%2C winged helix family PFAM: transcriptional regulator domain protein~KEGG: mab:MAB_0744 transcriptional regulatory protein gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3545 Tpau_3546 Tpau_3546 Tpau_3546 3657782 3658609 + conserved hypothetical protein KEGG: rop:ROP_49410 hypothetical protein gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3546 Tpau_3547 Tpau_3547 Tpau_3547 3658890 3659723 + Thiosulfate sulfurtransferase PFAM: Rhodanese domain protein~KEGG: mav:MAV_0756 putative thiosulfate sulfurtransferase~SMART: Rhodanese domain protein gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3547 Tpau_3548 Tpau_3548 Tpau_3548 3659730 3660035 + conserved hypothetical protein KEGG: rer:RER_48110 hypothetical protein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3548 Tpau_3549 Tpau_3549 Tpau_3549 3660077 3660196 + hypothetical protein gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3549 Tpau_3550 Tpau_3550 Tpau_3550 3660193 3660627 + methylated-DNA/protein-cysteinemethyltransferase KEGG: kra:Krad_2866 methylated-DNA--protein- cysteine methyltransferase~TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3550 Tpau_3551 Tpau_3551 Tpau_3551 3660624 3661289 + 2OG-Fe(II) oxygenase PFAM: 2OG-Fe(II) oxygenase~KEGG: jde:Jden_0402 2OG-Fe(II) oxygenase gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3551 Tpau_3552 Tpau_3552 Tpau_3552 3661415 3662104 + hypothetical protein KEGG: rop:ROP_56890 hypothetical protein gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3552 Tpau_3553 Tpau_3553 Tpau_3553 3662207 3662890 + two component transcriptional regulator%2C winged helix family PFAM: transcriptional regulator domain protein~KEGG: sco:SCO7230 two-component system response regulator gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3553 Tpau_3554 Tpau_3554 Tpau_3554 3662899 3663516 - putative fructose transport system kinase KEGG: msm:MSMEG_6800 putative fructose transport system kinase gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3554 Tpau_3555 Tpau_3555 Tpau_3555 3663513 3664367 - PfkB domain protein PFAM: PfkB domain protein~KEGG: msm:MSMEG_6801 kinase%2C PfkB family protein gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3555 Tpau_3556 Tpau_3556 Tpau_3556 3664342 3665124 - ABC transporter related protein KEGG: msm:MSMEG_6802 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3556 Tpau_3557 Tpau_3557 Tpau_3557 3665121 3666110 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: msm:MSMEG_6803 ribose transport system permease protein RbsC gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3557 Tpau_3558 Tpau_3558 Tpau_3558 3666077 3667087 - periplasmic binding protein/LacI transcriptional regulator PFAM: periplasmic binding protein/LacI transcriptional regulator~KEGG: msm:MSMEG_6804 sugar ABC transporter substrate-binding protein gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3558 Tpau_3559 Tpau_3559 Tpau_3559 3667223 3668242 + transcriptional regulator%2C LacI family KEGG: msm:MSMEG_6798 ribose operon repressor~PFAM: periplasmic binding protein/LacI transcriptional regulator%3B regulatory protein LacI~SMART: regulatory protein LacI gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3559 Tpau_3560 Tpau_3560 Tpau_3560 3668253 3668351 + hypothetical protein gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3560 Tpau_3561 Tpau_3561 Tpau_3561 3668357 3668998 + Domain of unknown function DUF1794 PFAM: Domain of unknown function DUF1794~KEGG: rer:RER_48130 hypothetical protein gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3561 Tpau_3562 Tpau_3562 Tpau_3562 3669238 3670548 + condensation domain protein PFAM: condensation domain protein~KEGG: mav:MAV_2005 PapA2 protein gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3562 Tpau_3563 Tpau_3563 Tpau_3563 3670603 3671754 + secretory lipase PFAM: secretory lipase~KEGG: rha:RHA1_ro05038 lipase gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3563 Tpau_3564 Tpau_3564 Tpau_3564 3671962 3672651 - protein of unknown function DUF899 thioredoxin family protein PFAM: protein of unknown function DUF899 thioredoxin family protein~KEGG: rop:ROP_70390 hypothetical protein gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3564 Tpau_3565 Tpau_3565 Tpau_3565 3672732 3673307 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: bcv:Bcav_0283 transcriptional regulator%2C TetR family gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3565 Tpau_3566 Tpau_3566 Tpau_3566 3673297 3674862 - Sigma 54 interacting domain protein TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC~PFAM: ABC transporter related~KEGG: rha:RHA1_ro04850 transport ATP-binding protein CydC~SMART: AAA ATPase gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3566 Tpau_3567 Tpau_3567 Tpau_3567 3674855 3676510 - ABC transporter%2C CydDC cysteine exporter (CydDC- E) family%2C permease/ATP-binding protein CydD TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD~PFAM: ABC transporter related~KEGG: rha:RHA1_ro04849 transport ATP-binding protein CydD~SMART: AAA ATPase gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3567 Tpau_3568 Tpau_3568 Tpau_3568 3676503 3677540 - cytochrome d ubiquinol oxidase%2C subunit II KEGG: rha:RHA1_ro04848 cytochrome bd ubiquinol oxidase subunit II~TIGRFAM: cytochrome d ubiquinol oxidase%2C subunit II~PFAM: cytochrome bd ubiquinol oxidase subunit II gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3568 Tpau_3569 Tpau_3569 Tpau_3569 3677550 3679057 - pseudogene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3569 Tpau_3570 Tpau_3570 Tpau_3570 3679213 3680595 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: kra:Krad_1805 amino acid permease-associated region gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3570 Tpau_3571 Tpau_3571 Tpau_3571 3680675 3681547 - aminotransferase class IV PFAM: aminotransferase class IV~KEGG: rop:ROP_49290 putative aminotransferase gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3571 Tpau_3572 Tpau_3572 Tpau_3572 3681608 3682657 + folate-binding protein YgfZ KEGG: rha:RHA1_ro04845 hypothetical protein~TIGRFAM: folate-binding protein YgfZ~PFAM: glycine cleavage T protein (aminomethyl transferase)%3B Glycine cleavage T-protein barrel gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3572 Tpau_3573 Tpau_3573 Tpau_3573 3682666 3683298 + MOSC domain containing protein PFAM: MOSC domain containing protein~KEGG: nfa:nfa5820 hypothetical protein gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3573 Tpau_3574 Tpau_3574 Tpau_3574 3683434 3683634 + conserved hypothetical protein KEGG: mbt:JTY_0832 hypothetical protein gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3574 Tpau_3575 Tpau_3575 Tpau_3575 3683727 3684803 - phosphoribosylformylglycinamidine cyclo-ligase TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase~KEGG: rop:ROP_49240 aminoimidazole ribonucleotide synthetase~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3575 Tpau_3576 Tpau_3576 Tpau_3576 3684831 3686384 - amidophosphoribosyltransferase KEGG: rop:ROP_49230 amidophosphoribosyltransferase~TIGRFAM: amidophosphoribosyltransferase~PFAM: glutamine amidotransferase class-II%3B phosphoribosyltransferase gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3576 Tpau_3577 Tpau_3577 Tpau_3577 3686474 3686854 + conserved hypothetical protein KEGG: rop:ROP_49220 hypothetical protein gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3577 Tpau_3578 Tpau_3578 Tpau_3578 3686851 3687561 - hypothetical protein KEGG: nfa:nfa11270 hypothetical protein gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3578 Tpau_3579 Tpau_3579 Tpau_3579 3687706 3689214 + conserved hypothetical protein KEGG: rha:RHA1_ro02266 hypothetical protein gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3579 Tpau_3580 Tpau_3580 Tpau_3580 3689284 3689889 + hypothetical protein KEGG: rha:RHA1_ro08783 hypothetical protein gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3580 Tpau_3581 Tpau_3581 Tpau_3581 3689891 3690811 - beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: mjl:Mjls_5118 hypothetical protein gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3581 Tpau_3582 Tpau_3582 Tpau_3582 3690821 3692167 - domain of unknown function DUF1731 PFAM: domain of unknown function DUF1731%3B Male sterility domain%3B NAD-dependent epimerase/dehydratase~KEGG: mva:Mvan_3512 hypothetical protein gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3582 Tpau_3583 Tpau_3583 Tpau_3583 3692263 3693528 + amine oxidase PFAM: amine oxidase%3B FAD dependent oxidoreductase~KEGG: rha:RHA1_ro02557 amine oxidase gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3583 Tpau_3584 Tpau_3584 Tpau_3584 3693525 3694289 + protein of unknown function DUF1365 PFAM: protein of unknown function DUF1365~KEGG: rop:ROP_22850 hypothetical protein gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3584 Tpau_3585 Tpau_3585 Tpau_3585 3694286 3695572 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: rop:ROP_22860 putative cyclopropane fatty acid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid synthase%3B Methyltransferase type 11%3B Methyltransferase type 12 gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3585 Tpau_3586 Tpau_3586 Tpau_3586 3695569 3696363 + protein of unknown function DUF1295 PFAM: protein of unknown function DUF1295~KEGG: rop:ROP_22880 hypothetical membrane protein gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3586 Tpau_3587 Tpau_3587 Tpau_3587 3696456 3697025 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: rer:RER_19260 RNA polymerase ECF-type sigma factor SigK~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2%3B sigma-70 region 4 domain protein gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3587 Tpau_3588 Tpau_3588 Tpau_3588 3697022 3697783 + Anti-sigma-K factor RskA PFAM: Anti-sigma-K factor RskA~KEGG: rha:RHA1_ro02563 hypothetical protein gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3588 Tpau_3589 Tpau_3589 Tpau_3589 3697815 3698648 - protein of unknown function DUF574 PFAM: protein of unknown function DUF574~KEGG: sen:SACE_5650 hypothetical protein gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3589 Tpau_3590 Tpau_3590 Tpau_3590 3698702 3700033 + diguanylate cyclase with PAS/PAC sensor TIGRFAM: diguanylate cyclase%3B PAS sensor protein~PFAM: GGDEF domain containing protein%3B PAS fold-4 domain protein~KEGG: nfa:nfa11350 hypothetical protein~SMART: GGDEF domain containing protein gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3590 Tpau_3591 Tpau_3591 Tpau_3591 3700003 3701400 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: pac:PPA2254 amino acid permease%2C putative GabA permease gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3591 Tpau_3592 Tpau_3592 Tpau_3592 3701400 3703667 - phosphoribosylformylglycinamidine synthase II TIGRFAM: phosphoribosylformylglycinamidine synthase II~KEGG: rop:ROP_49190 phosphoribosylformylglycinamidine synthase II~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3592 Tpau_3593 Tpau_3593 Tpau_3593 3703658 3705511 - sulfate adenylyltransferase%2C large subunit TIGRFAM: sulfate adenylyltransferase%2C large subunit%3B small GTP-binding protein%3B adenylylsulfate kinase~KEGG: mab:MAB_4182 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein~PFAM: adenylylsulfate kinase%3B protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3593 Tpau_3594 Tpau_3594 Tpau_3594 3705511 3706440 - sulfate adenylyltransferase%2C small subunit TIGRFAM: sulfate adenylyltransferase%2C small subunit~KEGG: mab:MAB_4181 sulfate adenylyltransferase subunit 2~PFAM: phosphoadenosine phosphosulfate reductase gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3594 Tpau_3595 Tpau_3595 Tpau_3595 3706520 3707914 - sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter~KEGG: nfa:nfa46330 putative sodium:dicarboxylate symporter gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3595 Tpau_3596 Tpau_3596 Tpau_3596 3708039 3709598 + signal transduction histidine kinase regulating citrate/malate metabolism KEGG: nfa:nfa46340 putative two-component system sensor kinase~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3596 Tpau_3597 Tpau_3597 Tpau_3597 3709595 3710281 + response regulator receiver and unknown domain protein KEGG: rha:RHA1_ro04820 regulator relate~PFAM: response regulator receiver~SMART: response regulator receiver gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3597 Tpau_3598 Tpau_3598 Tpau_3598 3710278 3711150 - transcriptional regulator%2C IclR family KEGG: mab:MAB_4180 IclR family transcriptional regulator~PFAM: regulatory protein IclR~SMART: regulatory protein IclR gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3598 Tpau_3599 Tpau_3599 Tpau_3599 3711238 3712395 + conserved hypothetical protein KEGG: mab:MAB_4179c hypothetical protein gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3599 Tpau_3600 Tpau_3600 Tpau_3600 3712395 3713171 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: mjl:Mjls_5029 short chain dehydrogenase gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3600 Tpau_3601 Tpau_3601 Tpau_3601 3713183 3714340 + conserved hypothetical protein KEGG: mab:MAB_4177c hypothetical protein gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3601 Tpau_3602 Tpau_3602 Tpau_3602 3714337 3715881 - extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: rha:RHA1_ro03309 ABC peptide transporter%2C substrate-binding component gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3602 Tpau_3603 Tpau_3603 Tpau_3603 3715878 3717434 - ABC transporter related protein KEGG: rha:RHA1_ro03312 ABC peptide transporter%2C ATP- binding component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3603 Tpau_3604 Tpau_3604 Tpau_3604 3717431 3718222 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rha:RHA1_ro03311 ABC peptide transporter%2C permease component gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3604 Tpau_3605 Tpau_3605 Tpau_3605 3718219 3719196 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rha:RHA1_ro03310 ABC peptide transporter%2C permease component gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3605 Tpau_3606 Tpau_3606 Tpau_3606 3719257 3720093 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rha:RHA1_ro05664 short chain dehydrogenase gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3606 Tpau_3607 Tpau_3607 Tpau_3607 3720170 3721393 + protein of unknown function DUF418 PFAM: protein of unknown function DUF418%3B protein of unknown function DUF405~KEGG: tfu:Tfu_0622 hypothetical protein gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3607 Tpau_3608 Tpau_3608 Tpau_3608 3721390 3723303 - Male sterility domain protein PFAM: Male sterility domain%3B KR domain protein%3B 3- beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4- dehydrorhamnose reductase%3B short-chain dehydrogenase/reductase SDR%3B NAD-dependent epimerase/dehydratase~KEGG: rop:ROP_62800 putative acyl-CoA reductase gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3608 Tpau_3609 Tpau_3609 Tpau_3609 3723433 3724650 + DNA-directed DNA polymerase KEGG: nfa:nfa26700 DNA polymerase IV~PFAM: UMUC domain protein DNA-repair protein gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3609 Tpau_3610 Tpau_3610 Tpau_3610 3724726 3726927 + molybdopterin dinucleotide-binding region PFAM: molydopterin dinucleotide-binding region%3B molybdopterin oxidoreductase%3B molybdopterin oxidoreductase Fe4S4 region~KEGG: nfa:nfa29460 putative oxidoreductase gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3610 Tpau_3611 Tpau_3611 Tpau_3611 3726928 3728409 - amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: aau:AAur_3852 putative D-serine/D- alanine/glycine transporter gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3611 Tpau_3612 Tpau_3612 Tpau_3612 3728466 3729719 - Aspartyl aminopeptidase KEGG: rer:RER_48340 M18 family aminopeptidase~PFAM: peptidase M18 aminopeptidase I gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3612 Tpau_3613 Tpau_3613 Tpau_3613 3729719 3730396 - phosphoribosylformylglycinamidine synthase I KEGG: rha:RHA1_ro04827 phosphoribosylformylglycinamidine synthase I~TIGRFAM: phosphoribosylformylglycinamidine synthase I gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3613 Tpau_3614 Tpau_3614 Tpau_3614 3730393 3730632 - phosphoribosylformylglycinamidine synthase%2C purS KEGG: mva:Mvan_5129 phosphoribosylformylglycinamidine synthase subunit PurS~TIGRFAM: phosphoribosylformylglycinamidine synthase%2C purS~PFAM: phosphoribosylformylglycinamidine synthetase PurS gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3614 Tpau_3615 Tpau_3615 Tpau_3615 3730717 3731364 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: rer:RER_10450 hypothetical protein gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3615 Tpau_3616 Tpau_3616 Tpau_3616 3731368 3732066 - conserved hypothetical protein KEGG: rop:ROP_49090 hypothetical protein gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3616 Tpau_3617 Tpau_3617 Tpau_3617 3732137 3732628 - Peroxiredoxin KEGG: rop:ROP_49080 putative glutathione peroxidase~PFAM: glutathione peroxidase gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3617 Tpau_3618 Tpau_3618 Tpau_3618 3732731 3733204 + transcriptional regulator%2C MarR family KEGG: rer:RER_17430 MarR family transcriptional regulator~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3618 Tpau_3619 Tpau_3619 Tpau_3619 3733201 3734811 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: rop:ROP_16300 drug resistance efflux protein~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: major facilitator superfamily MFS_1 gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3619 Tpau_3620 Tpau_3620 Tpau_3620 3734874 3735389 - hypothetical protein KEGG: mva:Mvan_0027 protein phosphatase 2C domain- containing protein gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3620 Tpau_3621 Tpau_3621 Tpau_3621 3735400 3737490 - Oligopeptidase B KEGG: rha:RHA1_ro04818 oligopeptidase B~PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller%3B peptidase S9 prolyl oligopeptidase active site domain protein gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3621 Tpau_3622 Tpau_3622 Tpau_3622 3737487 3738380 - phosphoribosylaminoimidazole-succinocarboxamides ynthase TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase~KEGG: msm:MSMEG_5841 phosphoribosylaminoimidazole- succinocarboxamide synthase~PFAM: SAICAR synthetase gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3622 Tpau_3623 Tpau_3623 Tpau_3623 3738516 3739397 + hypothetical protein KEGG: mav:MAV_4706 hypothetical protein gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3623 Tpau_3624 Tpau_3624 Tpau_3624 3739470 3740897 - adenylosuccinate lyase TIGRFAM: adenylosuccinate lyase~KEGG: rer:RER_10250 adenylosuccinate lyase~PFAM: fumarate lyase%3B Adenylosuccinate lyase-like gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3624 Tpau_3625 Tpau_3625 Tpau_3625 3740932 3741543 - putative transcriptional regulator%2C TetR family KEGG: nfa:nfa5580 hypothetical protein gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3625 Tpau_3626 Tpau_3626 Tpau_3626 3741626 3742861 - phosphoribosylamine/glycine ligase TIGRFAM: phosphoribosylamine/glycine ligase~KEGG: mjl:Mjls_4954 phosphoribosylamine--glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP- grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N- domain%3B Phosphoribosylglycinamide synthetase%2C C-domain%3B protein of unknown function DUF201 gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3626 Tpau_3627 Tpau_3627 Tpau_3627 3742953 3743951 + conserved hypothetical protein KEGG: rha:RHA1_ro04776 hypothetical protein gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3627 Tpau_3628 Tpau_3628 Tpau_3628 3743961 3744425 + transcriptional regulator%2C ArsR family KEGG: rha:RHA1_ro04775 hypothetical protein~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3628 Tpau_3629 Tpau_3629 Tpau_3629 3744435 3744836 + histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: mab:MAB_0676c HIT-like (histidine triad) protein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3629 Tpau_3630 Tpau_3630 Tpau_3630 3744840 3746246 - integral membrane sensor signal transduction histidine kinase KEGG: rer:RER_09880 two-component histidine kinase PhoR~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3630 Tpau_3631 Tpau_3631 Tpau_3631 3746251 3746958 - two component transcriptional regulator%2C winged helix family KEGG: mva:Mvan_5175 two component transcriptional regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3631 Tpau_3632 Tpau_3632 Tpau_3632 3747069 3747404 - conserved hypothetical protein KEGG: sco:SCO7730 hypothetical protein gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3632 Tpau_3633 Tpau_3633 Tpau_3633 3747401 3748393 - Pirin domain protein PFAM: Pirin domain protein~KEGG: mab:MAB_3941c hypothetical protein gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3633 Tpau_3634 Tpau_3634 Tpau_3634 3748411 3748905 + alkylhydroperoxidase like protein%2C AhpD family KEGG: mjl:Mjls_0888 alkylhydroperoxidase~TIGRFAM: alkylhydroperoxidase like protein%2C AhpD family~PFAM: Carboxymuconolactone decarboxylase gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3634 Tpau_3635 Tpau_3635 Tpau_3635 3748988 3749833 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: bte:BTH_II1459 alpha/beta fold family hydrolase gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3635 Tpau_3636 Tpau_3636 Tpau_3636 3749834 3750331 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: hypothetical protein %3B K03823 acetyltransferase gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3636 Tpau_3637 Tpau_3637 Tpau_3637 3750365 3752077 - aminotransferase class V PFAM: aminotransferase class V~KEGG: nca:Noca_2695 aminotransferase%2C class V gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3637 Tpau_3638 Tpau_3638 Tpau_3638 3752208 3753089 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: nca:Noca_1394 enoyl-CoA hydratase gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3638 Tpau_3639 Tpau_3639 Tpau_3639 3753478 3753945 + hypothetical protein gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3639 Tpau_3640 Tpau_3640 Tpau_3640 3754026 3755429 + protein of unknown function DUF1212 PFAM: protein of unknown function DUF1212~KEGG: rop:ROP_48160 threonine export protein gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3640 Tpau_3641 Tpau_3641 Tpau_3641 3755468 3755626 + conserved hypothetical protein KEGG: rop:ROP_48070 hypothetical protein gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3641 Tpau_3642 Tpau_3642 Tpau_3642 3755633 3757087 + Alpha%2Calpha-trehalose-phosphate synthase (UDP- forming) KEGG: rer:RER_09680 alpha%2Calpha-trehalose-phosphate synthase~PFAM: glycosyl transferase family 20 gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3642 Tpau_3643 Tpau_3643 Tpau_3643 3757084 3757845 + trehalose-phosphatase KEGG: nfa:nfa4460 putative trehalose-6-phosphate phophatase~TIGRFAM: trehalose-phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIB~PFAM: trehalose-phosphatase gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3643 Tpau_3644 Tpau_3644 Tpau_3644 3757835 3758674 - transglutaminase domain protein KEGG: mjl:Mjls_1224 transglutaminase domain- containing protein~PFAM: transglutaminase domain protein~SMART: transglutaminase domain protein gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3644 Tpau_3645 Tpau_3645 Tpau_3645 3758641 3759825 - ErfK/YbiS/YcfS/YnhG family protein PFAM: ErfK/YbiS/YcfS/YnhG family protein~KEGG: rha:RHA1_ro02085 hypothetical protein gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3645 Tpau_3646 Tpau_3646 Tpau_3646 3759826 3760881 - UDP-N-acetylenolpyruvoylglucosamine reductase TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~KEGG: svi:Svir_02620 UDP-N-acetylmuramate dehydrogenase~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein%3B FAD linked oxidase domain protein gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3646 Tpau_3647 Tpau_3647 Tpau_3647 3760906 3761442 + Protein of unknown function DUF2505 PFAM: Protein of unknown function DUF2505~KEGG: rop:ROP_17590 hypothetical protein gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3647 Tpau_3648 Tpau_3648 Tpau_3648 3761461 3761979 + Protein of unknown function DUF2505 PFAM: Protein of unknown function DUF2505~KEGG: nfa:nfa51990 hypothetical protein gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3648 Tpau_3649 Tpau_3649 Tpau_3649 3761985 3762752 + conserved hypothetical protein KEGG: cur:cur_0209 hypothetical protein gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3649 Tpau_3650 Tpau_3650 Tpau_3650 3762870 3763676 + Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: mmi:MMAR_0805 amidohydrolase gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3650 Tpau_3651 Tpau_3651 Tpau_3651 3763709 3764821 + hypothetical protein KEGG: msm:MSMEG_0923 hypothetical protein gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3651 Tpau_3652 Tpau_3652 Tpau_3652 3764821 3766116 + cytochrome P450 PFAM: cytochrome P450~KEGG: mav:MAV_2156 P450 heme-thiolate protein gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3652 Tpau_3653 Tpau_3653 Tpau_3653 3766119 3766823 - deoxyribose-phosphate aldolase TIGRFAM: deoxyribose-phosphate aldolase~KEGG: rer:RER_15930 deoxyribose-phosphate aldolase~PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3653 Tpau_3654 Tpau_3654 Tpau_3654 3766843 3767715 + formyltetrahydrofolate deformylase KEGG: rop:ROP_17670 formyltetrahydrofolate deformylase~TIGRFAM: formyltetrahydrofolate deformylase~PFAM: formyl transferase domain protein%3B amino acid- binding ACT domain protein gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3654 Tpau_3655 Tpau_3655 Tpau_3655 3767796 3768920 + Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: mva:Mvan_5262 phosphoglycerate mutase gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3655 Tpau_3656 Tpau_3656 Tpau_3656 3768930 3769973 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_18200 putative hydrolase gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3656 Tpau_3657 Tpau_3657 Tpau_3657 3769998 3770297 - conserved hypothetical protein KEGG: rop:ROP_18220 hypothetical membrane protein gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3657 Tpau_3658 Tpau_3658 Tpau_3658 3770371 3770913 - conserved hypothetical protein KEGG: rha:RHA1_ro02104 hypothetical protein gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3658 Tpau_3659 Tpau_3659 Tpau_3659 3770906 3771292 - transcriptional regulator%2C XRE family KEGG: rop:ROP_18240 putative Xre family DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3659 Tpau_3660 Tpau_3660 Tpau_3660 3771378 3772685 - protein of unknown function DUF445 PFAM: protein of unknown function DUF445~KEGG: rop:ROP_18250 hypothetical membrane protein gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3660 Tpau_3661 Tpau_3661 Tpau_3661 3772747 3773601 + protein of unknown function DUF344 PFAM: protein of unknown function DUF344~KEGG: rer:RER_15850 hypothetical protein gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3661 Tpau_3662 Tpau_3662 Tpau_3662 3773639 3774877 - low temperature requirement A PFAM: low temperature requirement A~KEGG: rop:ROP_58670 hypothetical membrane protein gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3662 Tpau_3663 Tpau_3663 Tpau_3663 3774936 3775688 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: nfa:nfa30340 short chain dehydrogenase gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3663 Tpau_3664 Tpau_3664 Tpau_3664 3775816 3776709 + transcriptional regulator%2C LysR family PFAM: regulatory protein LysR%3B LysR substrate- binding~KEGG: mab:MAB_4658 LysR family transcriptional regulator gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3664 Tpau_3665 Tpau_3665 Tpau_3665 3776697 3777452 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B UbiE/COQ5 methyltransferase%3B Methyltransferase type 12~KEGG: mab:MAB_4018 similarity with UbiE/COQ5 methyltransferase gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3665 Tpau_3666 Tpau_3666 Tpau_3666 3777471 3778397 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B HI0933 family protein~KEGG: rer:RER_45520 oxidoreductase gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3666 Tpau_3667 Tpau_3667 Tpau_3667 3778479 3779348 - 3-hydroxybutyryl-CoA dehydrogenase KEGG: mab:MAB_4094c 3-hydroxybutyryl-CoA dehydrogenase~PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding%3B 3-hydroxyacyl-CoA dehydrogenase domain protein gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3667 Tpau_3668 Tpau_3668 Tpau_3668 3779470 3780762 - isocitrate lyase KEGG: mab:MAB_4095c isocitrate lyase (AceA)~TIGRFAM: isocitrate lyase~PFAM: isocitrate lyase and phosphorylmutase gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3668 Tpau_3669 Tpau_3669 Tpau_3669 3781181 3782581 + transcriptional regulator%2C XRE family KEGG: msm:MSMEG_0906 DNA-binding protein~PFAM: Protein of unknown function DUF2083%2Ctranscriptional regulator%3B protein of unknown function DUF955%3B helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3669 Tpau_3670 Tpau_3670 Tpau_3670 3782591 3783109 + Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: rer:RER_15470 hypothetical protein gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3670 Tpau_3671 Tpau_3671 Tpau_3671 3783112 3783462 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: rer:RER_55360 hypothetical protein gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3671 Tpau_3672 Tpau_3672 Tpau_3672 3783472 3784347 - ectoine hydroxylase KEGG: rha:RHA1_ro04934 hydroxylase~TIGRFAM: ectoine hydroxylase~PFAM: Phytanoyl-CoA dioxygenase gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3672 Tpau_3673 Tpau_3673 Tpau_3673 3784506 3785282 - conserved hypothetical protein KEGG: mab:MAB_3262c hypothetical protein gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3673 Tpau_3674 Tpau_3674 Tpau_3674 3785374 3786756 - dihydrolipoamide dehydrogenase KEGG: fre:Franean1_5475 dihydrolipoamide dehydrogenase~TIGRFAM: dihydrolipoamide dehydrogenase~PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase%3B HI0933 family protein gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3674 Tpau_3675 Tpau_3675 Tpau_3675 3786787 3788817 + Prolyl oligopeptidase KEGG: rha:RHA1_ro02141 prolyl oligopeptidase~PFAM: peptidase S9 prolyl oligopeptidase active site domain protein%3B peptidase S9A prolyl oligopeptidase domain protein beta-propeller gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3675 Tpau_3676 Tpau_3676 Tpau_3676 3788814 3789116 + protein of unknown function DUF77 PFAM: protein of unknown function DUF77~KEGG: mva:Mvan_0176 hypothetical protein gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3676 Tpau_3677 Tpau_3677 Tpau_3677 3789104 3789541 - DoxX family protein PFAM: DoxX family protein~KEGG: cgb:cg1010 hypothetical protein gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3677 Tpau_3678 Tpau_3678 Tpau_3678 3789716 3790384 + conserved hypothetical protein KEGG: rop:ROP_59600 hypothetical protein gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3678 Tpau_3679 Tpau_3679 Tpau_3679 3790405 3791244 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_18600 hypothetical protein gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3679 Tpau_3680 Tpau_3680 Tpau_3680 3791241 3792110 - conserved hypothetical protein KEGG: mav:MAV_4699 hypothetical protein gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3680 Tpau_3681 Tpau_3681 Tpau_3681 3792150 3793085 - protein of unknown function DUF344 PFAM: protein of unknown function DUF344~KEGG: mab:MAB_4135c hypothetical protein gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3681 Tpau_3682 Tpau_3682 Tpau_3682 3793182 3793829 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: bte:BTH_II1794 transcriptional regulator gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3682 Tpau_3683 Tpau_3683 Tpau_3683 3793863 3794969 - isochorismate synthase KEGG: rha:RHA1_ro04795 isochorismate synthase~TIGRFAM: isochorismate synthase~PFAM: Chorismate binding-like gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3683 Tpau_3684 Tpau_3684 Tpau_3684 3794966 3795589 - isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: rer:RER_26990 isochorismatase gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3684 Tpau_3685 Tpau_3685 Tpau_3685 3795586 3797262 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rop:ROP_48840 2%2C3-dihydroxybenzoate-AMP ligase gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3685 Tpau_3686 Tpau_3686 Tpau_3686 3797259 3798011 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_48850 2%2C3-dihydro-2%2C3- dihydroxybenzoate dehydrogenase gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3686 Tpau_3687 Tpau_3687 Tpau_3687 3798011 3798880 - FAD-binding 9 siderophore-interacting domain protein PFAM: FAD-binding 9 siderophore-interacting domain protein%3B Siderophore-interacting protein~KEGG: ami:Amir_2724 siderophore-interacting protein gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3687 Tpau_3688 Tpau_3688 Tpau_3688 3798877 3800706 - ABC transporter related protein KEGG: cef:CE1565 putative ABC transporter permease protein~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3688 Tpau_3689 Tpau_3689 Tpau_3689 3800703 3802385 - ABC transporter related protein PFAM: ABC transporter related%3B ABC transporter transmembrane region~KEGG: fal:FRAAL4165 putative ABC transporter transmembrane protein gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3689 Tpau_3690 Tpau_3690 Tpau_3690 3802387 3803322 - formyl transferase domain protein PFAM: formyl transferase domain protein~KEGG: rop:ROP_48100 putative formyltransferase gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3690 Tpau_3691 Tpau_3691 Tpau_3691 3803322 3804620 - L-lysine 6-monooxygenase (NADPH) KEGG: rer:RER_09790 L-ornithine N5-oxygenase gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3691 Tpau_3692 Tpau_3692 Tpau_3692 3804688 3804930 + phosphopantetheine-binding protein PFAM: phosphopantetheine-binding~KEGG: rer:RER_26960 hypothetical protein gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3692 Tpau_3693 Tpau_3693 Tpau_3693 3805004 3811828 + amino acid adenylation domain protein KEGG: rop:ROP_20370 non-ribosomal peptide synthetase~TIGRFAM: amino acid adenylation domain protein~PFAM: AMP-dependent synthetase and ligase%3B Thioesterase%3B phosphopantetheine-binding%3B condensation domain protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3693 Tpau_3694 Tpau_3694 Tpau_3694 3811825 3812850 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: rha:RHA1_ro02320 ABC Fe(3+) transporter%2C substrate binding component gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3694 Tpau_3695 Tpau_3695 Tpau_3695 3812917 3813813 - Siderophore-interacting protein PFAM: Siderophore-interacting protein%3B FAD-binding 9 siderophore-interacting domain protein~KEGG: mgi:Mflv_3144 siderophore-interacting protein gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3695 Tpau_3696 Tpau_3696 Tpau_3696 3813928 3814914 - periplasmic binding protein PFAM: periplasmic binding protein~KEGG: sgr:SGR_6411 putative ferric enterobactin (enterochelin)-binding protein gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3696 Tpau_3697 Tpau_3697 Tpau_3697 3815025 3815951 + putative F420-dependent oxidoreductase KEGG: mgi:Mflv_0268 luciferase family protein~TIGRFAM: probable F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3697 Tpau_3698 Tpau_3698 Tpau_3698 3815928 3816455 - conserved hypothetical protein KEGG: mmi:MMAR_0763 hypothetical protein gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3698 Tpau_3699 Tpau_3699 Tpau_3699 3816474 3817214 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: fre:Franean1_6415 short-chain dehydrogenase/reductase SDR gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3699 Tpau_3700 Tpau_3700 Tpau_3700 3817318 3818139 + transcriptional regulator%2C XRE family KEGG: msm:MSMEG_0260 DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3700 Tpau_3701 Tpau_3701 Tpau_3701 3818156 3820078 - Heat shock protein Hsp90-like protein KEGG: mva:Mvan_1817 heat shock protein 90~PFAM: Heat shock protein Hsp90-like%3B ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3701 Tpau_3702 Tpau_3702 Tpau_3702 3820224 3821846 - chaperonin GroEL KEGG: rop:ROP_18630 60 kDa chaperonin~TIGRFAM: chaperonin GroEL~PFAM: chaperonin Cpn60/TCP-1 gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3702 Tpau_3703 Tpau_3703 Tpau_3703 3822172 3822633 + Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: rop:ROP_18720 hypothetical protein gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3703 Tpau_3704 Tpau_3704 Tpau_3704 3822685 3823857 - hypothetical protein KEGG: nfa:nfa8590 hypothetical protein gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3704 Tpau_3705 Tpau_3705 Tpau_3705 3823875 3825059 - hypothetical protein KEGG: nfa:nfa8590 hypothetical protein gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3705 Tpau_3706 Tpau_3706 Tpau_3706 3825245 3826612 + peptidase M20 PFAM: peptidase M20%3B peptidase dimerisation domain protein~KEGG: rha:RHA1_ro03735 hypothetical protein gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3706 Tpau_3707 Tpau_3707 Tpau_3707 3826609 3827817 + molybdenum cofactor synthesis domain protein KEGG: mva:Mvan_0752 molybdenum cofactor synthesis domain-containing protein~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B MoeA domain protein domain IV%3B molybdopterin binding domain gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3707 Tpau_3708 Tpau_3708 Tpau_3708 3827833 3828144 + Transglycosylase-associated protein PFAM: Transglycosylase-associated protein~KEGG: mab:MAB_3218 hypothetical protein gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3708 Tpau_3709 Tpau_3709 Tpau_3709 3828201 3828923 + phosphatidylserine decarboxylase related protein TIGRFAM: phosphatidylserine decarboxylase related protein~KEGG: rha:RHA1_ro02159 phosphatidylserine decarboxylase~PFAM: phosphatidylserine decarboxylase-related gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3709 Tpau_3710 Tpau_3710 Tpau_3710 3828920 3829819 + CDP-diacylglycerol--serineO-phosphatidyltransfer ase KEGG: mab:MAB_0638c putative CDP-diacylglycerol-- serine O-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3710 Tpau_3711 Tpau_3711 Tpau_3711 3829853 3832054 + Adenosinetriphosphatase PFAM: AAA ATPase central domain protein~KEGG: rer:RER_15150 ATPase~SMART: AAA ATPase gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3711 Tpau_3712 Tpau_3712 Tpau_3712 3832124 3833008 - conserved hypothetical protein KEGG: art:Arth_3129 hypothetical protein gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3712 Tpau_3713 Tpau_3713 Tpau_3713 3833153 3833521 - conserved hypothetical protein KEGG: cms:CMS_2210 hypothetical protein gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3713 Tpau_3714 Tpau_3714 Tpau_3714 3833678 3836581 + NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH/Ubiquinone/plastoquinone (complex I)%3B Na+/H+ antiporter MnhB subunit-related protein~KEGG: rha:RHA1_ro02165 putative monovalent cation/H+ antiporter subunit A gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3714 Tpau_3715 Tpau_3715 Tpau_3715 3836578 3837153 + NADH-ubiquinone oxidoreductase chain 4L PFAM: NADH-ubiquinone oxidoreductase chain 4L~KEGG: rop:ROP_18820 putative Na(+)/H(+) antiporter subunit C gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3715 Tpau_3716 Tpau_3716 Tpau_3716 3837150 3838829 + NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH/Ubiquinone/plastoquinone (complex I)~KEGG: msm:MSMEG_0846 putative monovalent cation/H+ antiporter subunit D gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3716 Tpau_3717 Tpau_3717 Tpau_3717 3838822 3839523 + cation antiporter PFAM: cation antiporter~KEGG: rha:RHA1_ro02168 putative monovalent cation/H+ antiporter subunit E gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3717 Tpau_3718 Tpau_3718 Tpau_3718 3839520 3839819 + multiple resistance and pH regulation protein F PFAM: multiple resistance and pH regulation protein F~KEGG: rop:ROP_18850 putative Na(+)/H(+) antiporter subunit F gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3718 Tpau_3719 Tpau_3719 Tpau_3719 3839819 3840151 + monovalent cation/proton antiporter%2C MnhG/PhaG subunit KEGG: rer:RER_14980 Na(+)/H(+) antiporter subunit G~TIGRFAM: monovalent cation/proton antiporter%2C MnhG/PhaG subunit~PFAM: Na+/H+ antiporter subunit gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3719 Tpau_3720 Tpau_3720 Tpau_3720 3840148 3841158 - Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~KEGG: ami:Amir_4781 pyridoxal-5'-phosphate- dependent protein beta subunit gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3720 Tpau_3721 Tpau_3721 Tpau_3721 3841155 3842066 - GHMP kinase PFAM: GHMP kinase~KEGG: ami:Amir_4780 GHMP kinase gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3721 Tpau_3722 Tpau_3722 Tpau_3722 3842066 3843268 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: ami:Amir_3917 major facilitator superfamily MFS_1 gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3722 Tpau_3723 Tpau_3723 Tpau_3723 3843265 3844059 - protein of unknown function DUF364 PFAM: protein of unknown function DUF364~KEGG: ami:Amir_4779 hypothetical protein gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3723 Tpau_3724 Tpau_3724 Tpau_3724 3844056 3845054 - periplasmic binding protein PFAM: periplasmic binding protein~KEGG: ami:Amir_4782 periplasmic binding protein gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3724 Tpau_3725 Tpau_3725 Tpau_3725 3845069 3845818 - ABC transporter related protein KEGG: ami:Amir_4783 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3725 Tpau_3726 Tpau_3726 Tpau_3726 3845815 3846873 - transport system permease protein PFAM: transport system permease protein~KEGG: ami:Amir_4784 transport system permease protein gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3726 Tpau_3727 Tpau_3727 Tpau_3727 3846988 3848127 - glutamate--cysteine ligase GCS2 PFAM: glutamate--cysteine ligase GCS2~KEGG: mjl:Mjls_0563 carboxylate-amine ligase gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3727 Tpau_3728 Tpau_3728 Tpau_3728 3848127 3848861 - superoxide dismutase copper/zinc binding protein PFAM: superoxide dismutase copper/zinc binding~KEGG: mjl:Mjls_0562 superoxide dismutase%2C copper/zinc binding gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3728 Tpau_3729 Tpau_3729 Tpau_3729 3848947 3849378 - hypothetical protein gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3729 Tpau_3730 Tpau_3730 Tpau_3730 3849446 3849772 - conserved hypothetical protein KEGG: rer:RER_14930 hypothetical protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3730 Tpau_3731 Tpau_3731 Tpau_3731 3849893 3850489 + peptide deformylase TIGRFAM: peptide deformylase~KEGG: rer:RER_14920 peptide deformylase~PFAM: formylmethionine deformylase gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3731 Tpau_3732 Tpau_3732 Tpau_3732 3850489 3851358 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rer:RER_14910 acetyltransferase gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3732 Tpau_3733 Tpau_3733 Tpau_3733 3851355 3851828 + Domain of unknown function DUF1990 PFAM: Domain of unknown function DUF1990~KEGG: art:Arth_0451 hypothetical protein gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3733 Tpau_3734 Tpau_3734 Tpau_3734 3851830 3852165 - conserved hypothetical protein KEGG: krh:KRH_05670 hypothetical protein gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3734 Tpau_3735 Tpau_3735 Tpau_3735 3852299 3853138 + ABC transporter related protein KEGG: jde:Jden_0418 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3735 Tpau_3736 Tpau_3736 Tpau_3736 3853135 3854247 + conserved hypothetical protein KEGG: bcv:Bcav_0551 hypothetical protein gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3736 Tpau_3737 Tpau_3737 Tpau_3737 3854387 3856087 + thiamine biosynthesis protein ThiC KEGG: nfa:nfa53160 thiamine biosynthesis protein ThiC~TIGRFAM: thiamine biosynthesis protein ThiC~PFAM: thiamine biosynthesis protein ThiC gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3737 Tpau_3738 Tpau_3738 Tpau_3738 3856084 3856971 + phosphomethylpyrimidine kinase TIGRFAM: phosphomethylpyrimidine kinase~KEGG: rop:ROP_18980 phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1 gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3738 Tpau_3739 Tpau_3739 Tpau_3739 3856982 3857824 + phosphomethylpyrimidine kinase KEGG: msm:MSMEG_0825 phosphomethylpyrimidine kinase~TIGRFAM: phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1 gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3739 Tpau_3740 Tpau_3740 Tpau_3740 3857790 3858998 - membrane protein AbrB duplication KEGG: kra:Krad_3869 putative ammonia monooxygenase~TIGRFAM: membrane protein AbrB duplication~PFAM: putative ammonia monooxygenase gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3740 Tpau_3741 Tpau_3741 Tpau_3741 3859120 3859890 - ABC transporter permease KEGG: rha:RHA1_ro02186 ABC transporter permease gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3741 Tpau_3742 Tpau_3742 Tpau_3742 3859887 3860825 - ABC transporter related protein KEGG: rer:RER_29430 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3742 Tpau_3743 Tpau_3743 Tpau_3743 3861021 3861881 + transcriptional regulator%2C LuxR family KEGG: mva:Mvan_1565 response regulator receiver protein~PFAM: regulatory protein LuxR~SMART: regulatory protein LuxR gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3743 Tpau_3744 Tpau_3744 Tpau_3744 3861972 3863369 + General substrate transporter PFAM: General substrate transporter%3B major facilitator superfamily MFS_1~KEGG: rha:RHA1_ro08942 major facilitator transporter gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3744 Tpau_3745 Tpau_3745 Tpau_3745 3863433 3865028 - protein of unknown function DUF222 KEGG: rha:RHA1_ro02511 hypothetical protein~PFAM: protein of unknown function DUF222%3B HNH endonuclease~SMART: HNH nuclease gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3745 Tpau_3746 Tpau_3746 Tpau_3746 3865166 3865936 - thiazole biosynthesis family protein PFAM: thiazole biosynthesis family protein~KEGG: mva:Mvan_0710 thiazole synthase gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3746 Tpau_3747 Tpau_3747 Tpau_3747 3865929 3866126 - thiamine biosynthesis protein ThiS KEGG: mgi:Mflv_0196 sulfur carrier protein ThiS~TIGRFAM: thiamine biosynthesis protein ThiS~PFAM: thiamineS protein gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3747 Tpau_3748 Tpau_3748 Tpau_3748 3866117 3867145 - glycine oxidase ThiO KEGG: nfa:nfa53390 putative amino acid oxidase~TIGRFAM: glycine oxidase ThiO~PFAM: FAD dependent oxidoreductase gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3748 Tpau_3749 Tpau_3749 Tpau_3749 3867284 3867952 + thiamine-phosphate pyrophosphorylase TIGRFAM: thiamine-phosphate pyrophosphorylase~KEGG: msm:MSMEG_0789 thiamine-phosphate pyrophosphorylase~PFAM: thiamine monophosphate synthase gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3749 Tpau_3750 Tpau_3750 Tpau_3750 3867942 3868313 - transcriptional regulator%2C HxlR family PFAM: helix-turn-helix HxlR type~KEGG: sen:SACE_6745 MarR family transcriptional regulator gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3750 Tpau_3751 Tpau_3751 Tpau_3751 3868380 3868790 + putative hydrolase KEGG: saq:Sare_2084 putative hydrolase gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3751 Tpau_3752 Tpau_3752 Tpau_3752 3868811 3869281 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: rop:ROP_19070 hypothetical protein gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3752 Tpau_3753 Tpau_3753 Tpau_3753 3869431 3870768 + conserved hypothetical protein KEGG: rer:RER_14760 hypothetical protein gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3753 Tpau_3754 Tpau_3754 Tpau_3754 3870765 3871745 + extracellular solute-binding protein family 3 KEGG: rop:ROP_19090 putative ABC transporter substrate-binding protein~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3754 Tpau_3755 Tpau_3755 Tpau_3755 3871758 3874079 + serine/threonine protein kinase KEGG: mab:MAB_4224 serine/threonine-protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase%3B Tetratricopeptide TPR_4~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3755 Tpau_3756 Tpau_3756 Tpau_3756 3874087 3874911 - ABC transporter related protein KEGG: sco:SCO0495 iron-siderophore ABC-transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3756 Tpau_3757 Tpau_3757 Tpau_3757 3874908 3876011 - transport system permease protein PFAM: transport system permease protein~KEGG: sgr:SGR_6712 iron ABC transporter gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3757 Tpau_3758 Tpau_3758 Tpau_3758 3876008 3877102 - transport system permease protein PFAM: transport system permease protein~KEGG: sco:SCO0497 iron-siderophore permease transmembrane protein gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3758 Tpau_3759 Tpau_3759 Tpau_3759 3877148 3878098 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: car:cauri_0360 iron ABC transport system%2C solute-binding protein gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3759 Tpau_3760 Tpau_3760 Tpau_3760 3878106 3879674 - adenylate/guanylate cyclase with integral membrane sensor KEGG: rop:ROP_11720 adenylate cyclase~PFAM: adenylyl cyclase class-3/4/guanylyl cyclase%3B histidine kinase HAMP region domain protein~SMART: histidine kinase HAMP region domain protein%3B adenylyl cyclase class-3/4/guanylyl cyclase gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3760 Tpau_3761 Tpau_3761 Tpau_3761 3879674 3880834 - acetate kinase KEGG: rha:RHA1_ro02196 acetate kinase~TIGRFAM: acetate kinase~PFAM: acetate and butyrate kinase gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3761 Tpau_3762 Tpau_3762 Tpau_3762 3880831 3882960 - phosphate acetyltransferase TIGRFAM: phosphate acetyltransferase~KEGG: rha:RHA1_ro02197 phosphate acetyltransferase~PFAM: phosphate acetyl/butaryl transferase%3B DRTGG domain protein gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3762 Tpau_3763 Tpau_3763 Tpau_3763 3882982 3883992 - glucose-6-phosphate dehydrogenase%2C F420- dependent KEGG: mav:MAV_4761 F420-dependent glucose-6- phosphate dehydrogenase~TIGRFAM: glucose-6-phosphate dehydrogenase%2C F420- dependent%3B F420-dependent oxidoreductase%2C G6PDH family~PFAM: Luciferase-like%2C subgroup gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3763 Tpau_3764 Tpau_3764 Tpau_3764 3884067 3884984 - Stage II sporulation D domain protein PFAM: Stage II sporulation D domain protein~KEGG: rop:ROP_39290 hypothetical protein gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3764 Tpau_3765 Tpau_3765 Tpau_3765 3885221 3887089 + ABC transporter related protein KEGG: rop:ROP_61020 putative ABC transporter permease/ATP-binding protein~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3765 Tpau_3766 Tpau_3766 Tpau_3766 3887102 3887455 - conserved hypothetical protein KEGG: nfa:nfa2910 hypothetical protein gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3766 Tpau_3767 Tpau_3767 Tpau_3767 3887457 3888251 - transcriptional regulator%2C MerR family KEGG: fre:Franean1_6982 MerR family transcriptional regulator~PFAM: transcription activator effector binding~SMART: regulatory protein MerR gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3767 Tpau_3768 Tpau_3768 Tpau_3768 3888368 3888934 - hypothetical protein gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3768 Tpau_3769 Tpau_3769 Tpau_3769 3889064 3890053 - Alpha/beta hydrolase fold-3 domain protein PFAM: Alpha/beta hydrolase fold-3 domain protein~KEGG: mab:MAB_0484 putative hydrolase/esterase/lipase gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3769 Tpau_3770 Tpau_3770 Tpau_3770 3890205 3894113 + non-ribosomal peptide synthetase KEGG: rer:RER_05430 non-ribosomal peptide synthetase~TIGRFAM: non-ribosomal peptide synthetase%3B amino acid adenylation domain protein~PFAM: AMP-dependent synthetase and ligase%3B transferase hexapeptide repeat containing protein%3B phosphopantetheine-binding gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3770 Tpau_3771 Tpau_3771 Tpau_3771 3894127 3894426 - putative transmembrane anti-sigma factor KEGG: stp:Strop_2588 hypothetical protein gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3771 Tpau_3772 Tpau_3772 Tpau_3772 3894605 3895183 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mab:MAB_3428c RNA polymerase sigma-C factor~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3772 Tpau_3773 Tpau_3773 Tpau_3773 3895197 3896210 + periplasmic binding protein KEGG: bgl:bglu_2g14780 periplasmic binding protein gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3773 Tpau_3774 Tpau_3774 Tpau_3774 3896207 3897253 + transport system permease protein PFAM: transport system permease protein%3B inner- membrane translocator~KEGG: sma:SAV_601 ABC transporter iron(III)/siderophore permease protein gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3774 Tpau_3775 Tpau_3775 Tpau_3775 3897250 3898047 + ABC transporter related protein KEGG: sco:SCO7217 iron ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3775 Tpau_3776 Tpau_3776 Tpau_3776 3898090 3899331 + cytochrome P450 PFAM: cytochrome P450~KEGG: rsa:RSal33209_2066 cytochrome P450 superfamily protein gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3776 Tpau_3777 Tpau_3777 Tpau_3777 3899415 3900239 + Pyoverdine biosynthesis protein PFAM: Pyoverdine biosynthesis protein~KEGG: rsa:RSal33209_2067 pyoverdine biosynthesis protein gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3777 Tpau_3778 Tpau_3778 Tpau_3778 3900275 3901486 + cytochrome P450 PFAM: cytochrome P450~KEGG: mab:MAB_1406c cytochrome P450 gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3778 Tpau_3779 Tpau_3779 Tpau_3779 3901483 3902067 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mva:Mvan_4466 TetR family transcriptional regulator gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3779 Tpau_3780 Tpau_3780 Tpau_3780 3902064 3902543 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: rer:RER_05920 hypothetical protein gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3780 Tpau_3781 Tpau_3781 Tpau_3781 3902693 3904069 + Peptidase M1 membrane alanine aminopeptidase PFAM: Peptidase M1 membrane alanine aminopeptidase~KEGG: mab:MAB_0509c peptidase M1%2C membrane alanine aminopeptidase gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3781 Tpau_3782 Tpau_3782 Tpau_3782 3904106 3904738 + thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: nfa:nfa51370 hypothetical protein gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3782 Tpau_3783 Tpau_3783 Tpau_3783 3904781 3905845 + conserved hypothetical protein KEGG: mab:MAB_0923c hypothetical protein gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3783 Tpau_3784 Tpau_3784 Tpau_3784 3905876 3906709 + putative transcriptional regulator%2C PaaX family PFAM: PaaX domain protein domain~KEGG: mab:MAB_0920 putative repressor in the phenylacetic acid catabolism gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3784 Tpau_3785 Tpau_3785 Tpau_3785 3906828 3907211 + DGPFAETKE family protein KEGG: nca:Noca_2116 DGPFAETKE family protein gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3785 Tpau_3786 Tpau_3786 Tpau_3786 3907242 3908510 + putative RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: nca:Noca_2117 sigma-70 region 2 domain- containing protein~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3786 Tpau_3787 Tpau_3787 Tpau_3787 3908549 3909553 + dTDP-glucose 4%2C6-dehydratase KEGG: rer:RER_02500 dTDP-glucose 4%2C6-dehydratase~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4-dehydrorhamnose reductase gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3787 Tpau_3788 Tpau_3788 Tpau_3788 3909679 3910305 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: mjl:Mjls_5098 TetR family transcriptional regulator gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3788 Tpau_3789 Tpau_3789 Tpau_3789 3910436 3911254 + protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: rop:ROP_18130 putative YrbE family protein gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3789 Tpau_3790 Tpau_3790 Tpau_3790 3911254 3912108 + protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: rop:ROP_18120 putative YrbE family protein gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3790 Tpau_3791 Tpau_3791 Tpau_3791 3912117 3913151 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: mav:MAV_5052 hypothetical protein gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3791 Tpau_3792 Tpau_3792 Tpau_3792 3913156 3914154 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: rop:ROP_18100 putative Mce family protein gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3792 Tpau_3793 Tpau_3793 Tpau_3793 3914151 3915143 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: rop:ROP_18090 putative Mce family protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3793 Tpau_3794 Tpau_3794 Tpau_3794 3915113 3916228 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: rop:ROP_18080 putative Mce family protein gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3794 Tpau_3795 Tpau_3795 Tpau_3795 3916228 3917244 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: rop:ROP_18070 putative Mce family protein gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3795 Tpau_3796 Tpau_3796 Tpau_3796 3917241 3918314 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: rop:ROP_18060 putative Mce family protein gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3796 Tpau_3797 Tpau_3797 Tpau_3797 3918334 3920418 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: rer:RER_07070 hypothetical protein gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3797 Tpau_3798 Tpau_3798 Tpau_3798 3920537 3921322 + 2-oxopent-4-enoate hydratase KEGG: rop:ROP_37500 putative 2-hydroxypenta-2%2C4- dienoate hydratase~PFAM: fumarylacetoacetate (FAA) hydrolase gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3798 Tpau_3799 Tpau_3799 Tpau_3799 3921343 3921531 + 3Fe-4S ferredoxin KEGG: rer:RER_07940 3Fe-4S ferredoxin gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3799 Tpau_3800 Tpau_3800 Tpau_3800 3921645 3922694 - 4-hydroxy-2-oxovalerate aldolase KEGG: rha:RHA1_ro09019 4-hydroxy-2-ketovalerate aldolase~TIGRFAM: 4-hydroxy-2-oxovalerate aldolase~PFAM: pyruvate carboxyltransferase%3B DmpG communication domain protein gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3800 Tpau_3801 Tpau_3801 Tpau_3801 3922691 3923599 - acetaldehyde dehydrogenase (acetylating) TIGRFAM: acetaldehyde dehydrogenase (acetylating)~KEGG: rha:RHA1_ro09018 acetaldehyde dehydrogenase~PFAM: Acetaldehyde dehydrogenase %3B Semialdehyde dehydrogenase NAD - binding gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3801 Tpau_3802 Tpau_3802 Tpau_3802 3923600 3924394 + transcriptional regulator%2C IclR family KEGG: rop:ROP_34190 putative IclR family transcriptional regulator~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3802 Tpau_3803 Tpau_3803 Tpau_3803 3924417 3925091 - conserved hypothetical protein KEGG: mab:MAB_1289c hypothetical protein gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3803 Tpau_3804 Tpau_3804 Tpau_3804 3925092 3925853 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: bac:BamMC406_4593 short-chain dehydrogenase/reductase SDR gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3804 Tpau_3805 Tpau_3805 Tpau_3805 3925859 3926749 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rer:RER_09570 oxidoreductase gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3805 Tpau_3806 Tpau_3806 Tpau_3806 3926858 3928042 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: rer:RER_09550 acyl-CoA dehydrogenase gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3806 Tpau_3807 Tpau_3807 Tpau_3807 3928061 3929143 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rha:RHA1_ro04692 acyl-CoA dehydrogenase gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3807 Tpau_3808 Tpau_3808 Tpau_3808 3929140 3930783 + glucose-methanol-choline oxidoreductase PFAM: glucose-methanol-choline oxidoreductase%3B GMC oxidoreductase~KEGG: cai:Caci_4459 glucose-methanol-choline oxidoreductase gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3808 Tpau_3809 Tpau_3809 Tpau_3809 3930791 3932317 + pseudogene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3809 Tpau_3810 Tpau_3810 Tpau_3810 3932306 3933925 - DNA ligase I%2C ATP-dependent Dnl1 KEGG: rha:RHA1_ro01648 ATP-dependent DNA ligase~TIGRFAM: DNA ligase I%2C ATP-dependent Dnl1~PFAM: ATP dependent DNA ligase%3B DNA ligase domain protein%3B ATP dependent DNA ligase domain protein gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3810 Tpau_3811 Tpau_3811 Tpau_3811 3934014 3935596 - pseudogene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3811 Tpau_3812 Tpau_3812 Tpau_3812 3935642 3936661 + putative F420-dependent oxidoreductase KEGG: saq:Sare_2798 luciferase family protein~TIGRFAM: putative F420-dependent oxidoreductase~PFAM: Luciferase-like%2C subgroup gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3812 Tpau_3813 Tpau_3813 Tpau_3813 3936658 3937299 - conserved hypothetical protein KEGG: rer:RER_08830 hypothetical protein gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3813 Tpau_3814 Tpau_3814 Tpau_3814 3937306 3937803 - PPOX class putative F420-dependent enzyme KEGG: msm:MSMEG_0048 pyridoxamine 5'-phosphate oxidase family protein~TIGRFAM: PPOX class probable F420-dependent enzyme~PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3814 Tpau_3815 Tpau_3815 Tpau_3815 3937808 3938911 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: rer:RER_09370 oxidoreductase gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3815 Tpau_3816 Tpau_3816 Tpau_3816 3939035 3939826 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rha:RHA1_ro04688 enoyl-CoA hydratase gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3816 Tpau_3817 Tpau_3817 Tpau_3817 3939821 3941392 - pseudogene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3817 Tpau_3818 Tpau_3818 Tpau_3818 3941469 3942431 + protein of unknown function DUF35 PFAM: protein of unknown function DUF35~KEGG: rop:ROP_47840 hypothetical protein gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3818 Tpau_3819 Tpau_3819 Tpau_3819 3942431 3943507 + conserved hypothetical protein KEGG: rer:RER_09310 hypothetical protein gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3819 Tpau_3820 Tpau_3820 Tpau_3820 3943504 3944679 + acetyl-CoA acetyltransferase KEGG: nfa:nfa5210 acetyl-CoA acetyltransferase gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3820 Tpau_3821 Tpau_3821 Tpau_3821 3944737 3945960 - cytochrome P450 monooxygenase KEGG: nfa:nfa24320 cytochrome P450 monooxygenase gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3821 Tpau_3822 Tpau_3822 Tpau_3822 3946205 3947365 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: rop:ROP_47770 putative acetyl-CoA acyltransferase~PFAM: Thiolase gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3822 Tpau_3823 Tpau_3823 Tpau_3823 3947369 3948358 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4-dehydrorhamnose reductase~KEGG: rop:ROP_48050 NAD-dependent epimerase/dehydratase family protein gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3823 Tpau_3824 Tpau_3824 Tpau_3824 3948439 3949344 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_47520 putative oxidoreductase gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3824 Tpau_3825 Tpau_3825 Tpau_3825 3949368 3950153 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: rop:ROP_47510 putative oxidoreductase gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3825 Tpau_3826 Tpau_3826 Tpau_3826 3950256 3951038 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rha:RHA1_ro04652 enoyl-CoA hydratase gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3826 Tpau_3827 Tpau_3827 Tpau_3827 3951035 3951907 + coenzyme A transferase PFAM: coenzyme A transferase~KEGG: stp:Strop_2605 coenzyme A transferase gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3827 Tpau_3828 Tpau_3828 Tpau_3828 3951904 3952647 + coenzyme A transferase PFAM: coenzyme A transferase~KEGG: nca:Noca_2745 putative CoA transferase beta subunit gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3828 Tpau_3829 Tpau_3829 Tpau_3829 3952644 3953699 + 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: rop:ROP_47470 putative oxidoreductase gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3829 Tpau_3830 Tpau_3830 Tpau_3830 3953710 3954399 - hypothetical protein KEGG: rer:RER_02660 membrane protein gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3830 Tpau_3831 Tpau_3831 Tpau_3831 3954774 3955487 + two component transcriptional regulator%2C winged helix family PFAM: transcriptional regulator domain protein~KEGG: sgr:SGR_2635 putative two-component system response regulator gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3831 Tpau_3832 Tpau_3832 Tpau_3832 3955500 3956663 - acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: swi:Swit_3630 acetyl-CoA acetyltransferase~PFAM: Thiolase gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3832 Tpau_3833 Tpau_3833 Tpau_3833 3956660 3957274 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: nfa:nfa4880 putative transcriptional regulator gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3833 Tpau_3834 Tpau_3834 Tpau_3834 3957267 3958079 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: cai:Caci_1368 short-chain dehydrogenase/reductase SDR gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3834 Tpau_3835 Tpau_3835 Tpau_3835 3958076 3959224 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: nfa:nfa4840 putative acyl-CoA dehydrogenase gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3835 Tpau_3836 Tpau_3836 Tpau_3836 3959347 3960879 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rop:ROP_45400 putative fatty-acid--CoA ligase gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3836 Tpau_3837 Tpau_3837 Tpau_3837 3960876 3961778 + Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: nfa:nfa4820 enoyl-CoA hydratase gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3837 Tpau_3838 Tpau_3838 Tpau_3838 3961781 3962938 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein~KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3838 Tpau_3839 Tpau_3839 Tpau_3839 3962935 3963939 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: mab:MAB_0594c acyl-CoA dehydrogenase FadE gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3839 Tpau_3840 Tpau_3840 Tpau_3840 3963936 3964988 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: nfa:nfa4790 putative acyl-CoA dehydrogenase gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3840 Tpau_3841 Tpau_3841 Tpau_3841 3965060 3965977 + methyltransferase KEGG: mab:MAB_4585c hypothetical protein~TIGRFAM: methyltransferase~PFAM: O-methyltransferase domain protein gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3841 Tpau_3842 Tpau_3842 Tpau_3842 3966033 3966605 - flavin reductase domain protein FMN-binding protein PFAM: flavin reductase domain protein FMN-binding~KEGG: rer:RER_07580 oxidoreductase gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3842 Tpau_3843 Tpau_3843 Tpau_3843 3966605 3967510 - Biphenyl-2%2C3-diol 1%2C2-dioxygenase KEGG: mab:MAB_0585 2%2C3-dihydroxybiphenyl 1%2C2- dioxygenase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3843 Tpau_3844 Tpau_3844 Tpau_3844 3967528 3968397 - alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rop:ROP_44550 MetA-cleavage compound hydrolase gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3844 Tpau_3845 Tpau_3845 Tpau_3845 3968400 3969575 - Acyl-CoA dehydrogenase type 2 domain protein PFAM: Acyl-CoA dehydrogenase type 2 domain~KEGG: rop:ROP_44540 putative hydroxylase gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3845 Tpau_3846 Tpau_3846 Tpau_3846 3969783 3971243 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase~KEGG: nfa:nfa46590 hypothetical protein gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3846 Tpau_3847 Tpau_3847 Tpau_3847 3971486 3971902 + hypothetical protein KEGG: hypothetical protein gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3847 Tpau_3848 Tpau_3848 Tpau_3848 3972039 3973754 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase~KEGG: rer:RER_07370 3-keto-5alpha-steroid delta(1)- dehydrogenase KstD3 gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3848 Tpau_3849 Tpau_3849 Tpau_3849 3973751 3974932 + Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha- hydroxylase%2C oxygenase gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3849 Tpau_3850 Tpau_3850 Tpau_3850 3974938 3975288 + hypothetical protein KEGG: saq:Sare_2881 hypothetical protein gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3850 Tpau_3851 Tpau_3851 Tpau_3851 3975302 3976384 + ferredoxin PFAM: ferredoxin%3B oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein~KEGG: mkm:Mkms_4796 ferredoxin gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3851 Tpau_3852 Tpau_3852 Tpau_3852 3976392 3977249 + 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-chole st-24-enoyl-CoAhydratase KEGG: rer:RER_07360 enoyl-CoA hydratase~PFAM: MaoC domain protein dehydratase gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3852 Tpau_3853 Tpau_3853 Tpau_3853 3977257 3977667 - conserved hypothetical protein KEGG: nfa:nfa5190 hypothetical protein gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3853 Tpau_3854 Tpau_3854 Tpau_3854 3977678 3978544 - Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: nfa:nfa29530 hypothetical protein gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3854 Tpau_3855 Tpau_3855 Tpau_3855 3978645 3980900 + acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: nca:Noca_2790 acyl-CoA dehydrogenase domain- containing protein gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3855 Tpau_3856 Tpau_3856 Tpau_3856 3980897 3981865 + protein of unknown function DUF35 PFAM: protein of unknown function DUF35~KEGG: rha:RHA1_ro04486 hypothetical protein gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3856 Tpau_3857 Tpau_3857 Tpau_3857 3981862 3982278 + conserved hypothetical protein KEGG: nfa:nfa4520 hypothetical protein gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3857 Tpau_3858 Tpau_3858 Tpau_3858 3982275 3983447 + conserved hypothetical protein KEGG: rer:RER_07120 hypothetical protein gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3858 Tpau_3859 Tpau_3859 Tpau_3859 3983451 3984077 + thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: rer:RER_16990 hypothetical protein gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3859 Tpau_3860 Tpau_3860 Tpau_3860 3984090 3984779 - conserved hypothetical protein KEGG: nfa:nfa6070 hypothetical protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3860 Tpau_3861 Tpau_3861 Tpau_3861 3984916 3985389 - conserved hypothetical protein KEGG: nfa:nfa14200 hypothetical protein gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3861 Tpau_3862 Tpau_3862 Tpau_3862 3985436 3985537 - hypothetical protein gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3862 Tpau_3863 Tpau_3863 Tpau_3863 3985666 3986586 + band 7 protein KEGG: cef:CE2656 hypothetical protein~PFAM: band 7 protein~SMART: band 7 protein gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3863 Tpau_3864 Tpau_3864 Tpau_3864 3986586 3986813 + conserved hypothetical protein KEGG: sma:SAV_3227 hypothetical protein gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3864 Tpau_3865 Tpau_3865 Tpau_3865 3986897 3987886 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: rer:RER_23560 iron-siderophore binding protein gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3865 Tpau_3866 Tpau_3866 Tpau_3866 3987996 3988496 + protein of unknown function DUF664 PFAM: protein of unknown function DUF664~KEGG: aau:AAur_1134 hypothetical protein gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3866 Tpau_3867 Tpau_3867 Tpau_3867 3988744 3989538 + aminoglycoside phosphotransferase PFAM: aminoglycoside phosphotransferase~KEGG: ach:Achl_2966 aminoglycoside phosphotransferase gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3867 Tpau_3868 Tpau_3868 Tpau_3868 3989745 3990530 + hypothetical protein KEGG: cgt:cgR_0900 hypothetical protein gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3868 Tpau_3869 Tpau_3869 Tpau_3869 3990664 3991881 + putative transcriptional regulator%2C PucR family KEGG: sma:SAV_1389 hypothetical protein gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3869 Tpau_3870 Tpau_3870 Tpau_3870 3992090 3993589 + putative monooxygenase KEGG: nfa:nfa12780 putative monooxygenase gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3870 Tpau_3871 Tpau_3871 Tpau_3871 3993699 3994241 + bifunctional deaminase-reductase domain protein PFAM: bifunctional deaminase-reductase domain protein~KEGG: ami:Amir_5078 bifunctional deaminase- reductase domain protein gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3871 Tpau_3872 Tpau_3872 Tpau_3872 3994245 3994640 + hypothetical protein KEGG: rrs:RoseRS_2673 pyridoxamine 5'-phosphate oxidase-related%2C FMN-binding gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3872 Tpau_3873 Tpau_3873 Tpau_3873 3994746 3996383 + serine/threonine protein kinase KEGG: mkm:Mkms_4403 protein kinase~PFAM: Serine/threonine protein kinase-related%3B tyrosine protein kinase~SMART: serine/threonine protein kinase%3B tyrosine protein kinase gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3873 Tpau_3874 Tpau_3874 Tpau_3874 3996380 3997600 - DNA polymerase III%2C delta prime subunit TIGRFAM: DNA polymerase III%2C delta prime subunit~KEGG: msm:MSMEG_6153 DNA polymerase III subunit delta'~SMART: AAA ATPase gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3874 Tpau_3875 Tpau_3875 Tpau_3875 3997698 3999197 + adenylate/guanylate cyclase with integral membrane sensor KEGG: mva:Mvan_5395 putative adenylate/guanylate cyclase~PFAM: histidine kinase HAMP region domain protein%3B adenylyl cyclase class-3/4/guanylyl cyclase~SMART: adenylyl cyclase class-3/4/guanylyl cyclase%3B histidine kinase HAMP region domain protein gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3875 Tpau_3876 Tpau_3876 Tpau_3876 3999194 4002100 - DNA topoisomerase I SMART: DNA topoisomerase I DNA-binding%3B DNA topoisomerase I ATP-binding%3B Toprim sub domain protein~TIGRFAM: DNA topoisomerase I~KEGG: msm:MSMEG_6157 DNA topoisomerase I~PFAM: DNA topoisomerase type IA central domain protein%3B TOPRIM domain protein gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3876 Tpau_3877 Tpau_3877 Tpau_3877 4002279 4004642 - pseudogene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3877 Tpau_3878 Tpau_3878 Tpau_3878 4002665 4002857 + pseudogene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3878 Tpau_3879 Tpau_3879 Tpau_3879 4002914 4004287 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3879 Tpau_3880 Tpau_3880 Tpau_3880 4004787 4004990 - cold-shock DNA-binding domain protein KEGG: rer:RER_05110 cold shock protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3880 Tpau_3881 Tpau_3881 Tpau_3881 4005288 4007675 + Protein of unknown function DUF1998 KEGG: rer:RER_05100 ATP-dependent helicase~PFAM: Protein of unknown function DUF1998%3B DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3881 Tpau_3882 Tpau_3882 Tpau_3882 4007678 4008007 - conserved hypothetical protein KEGG: mjl:Mjls_2803 hypothetical protein gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3882 Tpau_3883 Tpau_3883 Tpau_3883 4008076 4008549 + conserved hypothetical protein KEGG: sma:SAV_5987 hypothetical protein gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3883 Tpau_3884 Tpau_3884 Tpau_3884 4008550 4008912 - conserved hypothetical protein KEGG: rer:RER_05090 hypothetical protein gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3884 Tpau_3885 Tpau_3885 Tpau_3885 4008909 4009217 - conserved hypothetical protein KEGG: rop:ROP_42540 hypothetical membrane protein gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3885 Tpau_3886 Tpau_3886 Tpau_3886 4009390 4009599 + conserved hypothetical protein KEGG: mav:MAV_2264 hypothetical protein gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3886 Tpau_3887 Tpau_3887 Tpau_3887 4009596 4009778 + hypothetical protein gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3887 Tpau_3888 Tpau_3888 Tpau_3888 4009775 4009978 + hypothetical protein gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3888 Tpau_3889 Tpau_3889 Tpau_3889 4010063 4010422 + hypothetical protein KEGG: mtb:TBMG_01317 phiRv2 phage protein gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3889 Tpau_3890 Tpau_3890 Tpau_3890 4010419 4011690 + conserved hypothetical protein KEGG: bfa:Bfae_16880 hypothetical protein gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3890 Tpau_3891 Tpau_3891 Tpau_3891 4011792 4012064 + hypothetical protein gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3891 Tpau_3892 Tpau_3892 Tpau_3892 4012057 4012566 + pseudogene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3892 Tpau_3893 Tpau_3893 Tpau_3893 4012563 4014032 + Terminase PFAM: Terminase~KEGG: mkm:Mkms_2958 phage terminase gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3893 Tpau_3894 Tpau_3894 Tpau_3894 4014043 4015317 + protein of unknown function DUF1483 PFAM: protein of unknown function DUF1483~KEGG: mkm:Mkms_2957 hypothetical protein gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3894 Tpau_3895 Tpau_3895 Tpau_3895 4015314 4015904 + conserved hypothetical protein KEGG: mkm:Mkms_3076 hypothetical protein gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3895 Tpau_3896 Tpau_3896 Tpau_3896 4015894 4016277 + conserved hypothetical protein KEGG: mkm:Mkms_3077 hypothetical protein gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3896 Tpau_3897 Tpau_3897 Tpau_3897 4016274 4016573 + hypothetical protein gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3897 Tpau_3898 Tpau_3898 Tpau_3898 4016784 4017623 + major capsid protein HK97 PFAM: major capsid protein HK97~KEGG: mkm:Mkms_2954 phage major capsid protein%2C HK97 gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3898 Tpau_3899 Tpau_3899 Tpau_3899 4017626 4017934 + conserved hypothetical protein KEGG: mkm:Mkms_3079 hypothetical protein gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3899 Tpau_3900 Tpau_3900 Tpau_3900 4017931 4018080 + hypothetical protein gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3900 Tpau_3901 Tpau_3901 Tpau_3901 4018315 4019529 + transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3901 Tpau_3902 Tpau_3902 Tpau_3902 4019581 4019736 + hypothetical protein gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3902 Tpau_3903 Tpau_3903 Tpau_3903 4019747 4019890 + hypothetical protein gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3903 Tpau_3904 Tpau_3904 Tpau_3904 4019872 4021254 - Resolvase domain protein PFAM: Resolvase domain%3B Recombinase~KEGG: mva:Mvan_1448 recombinase gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3904 Tpau_3905 Tpau_3905 Tpau_3905 4021242 4021406 - hypothetical protein KEGG: nfa:nfa3620 hypothetical protein gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3905 Tpau_3906 Tpau_3906 Tpau_3906 4021430 4022023 - Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: msm:MSMEG_6167 type II secretion system protein F gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3906 Tpau_3907 Tpau_3907 Tpau_3907 4022020 4022829 - Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: mva:Mvan_5406 type II secretion system protein gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3907 Tpau_3908 Tpau_3908 Tpau_3908 4022826 4024007 - type II secretion system protein E PFAM: type II secretion system protein E~KEGG: nfa:nfa3590 hypothetical protein gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3908 Tpau_3909 Tpau_3909 Tpau_3909 4024004 4025071 - conserved hypothetical protein KEGG: msm:MSMEG_6171 hypothetical protein gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3909 Tpau_3910 Tpau_3910 Tpau_3910 4025187 4026041 + HAD-superfamily subfamily IB hydrolase KEGG: mmi:MMAR_5149 phosphoserine phosphatase SerB~TIGRFAM: HAD-superfamily subfamily IB hydrolase%2C TIGR01490%3B HAD-superfamily hydrolase%2C subfamily IB (PSPase- like)~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3910 Tpau_3911 Tpau_3911 Tpau_3911 4026479 4027216 - conserved hypothetical protein KEGG: rer:RER_05010 hypothetical protein gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3911 Tpau_3912 Tpau_3912 Tpau_3912 4027249 4029033 - ABC transporter related protein KEGG: rer:RER_05000 ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3912 Tpau_3913 Tpau_3913 Tpau_3913 4029033 4029983 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: car:cauri_0213 iron ABC transport system%2C permease protein gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3913 Tpau_3914 Tpau_3914 Tpau_3914 4029976 4030902 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rop:ROP_42440 putative ABC transporter permease protein gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3914 Tpau_3915 Tpau_3915 Tpau_3915 4030907 4032538 - extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: rop:ROP_42430 putative ABC transporter substrate-binding protein gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3915 Tpau_3916 Tpau_3916 Tpau_3916 4032739 4034685 + acetate/CoA ligase KEGG: mab:MAB_0425c acetyl-CoA synthetase~TIGRFAM: acetate/CoA ligase~PFAM: AMP-dependent synthetase and ligase gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3916 Tpau_3917 Tpau_3917 Tpau_3917 4034721 4035575 + protein of unknown function DUF990 PFAM: protein of unknown function DUF990~KEGG: fal:FRAAL3907 putative ABC-type uncharacterized transport system%2C permease component gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3917 Tpau_3918 Tpau_3918 Tpau_3918 4035568 4036413 + protein of unknown function DUF990 PFAM: protein of unknown function DUF990~KEGG: fal:FRAAL3906 putative integral membrane transport protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3918 Tpau_3919 Tpau_3919 Tpau_3919 4036410 4037366 + ABC transporter related protein KEGG: nfa:nfa21680 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3919 Tpau_3920 Tpau_3920 Tpau_3920 4037339 4037863 - conserved hypothetical protein KEGG: rer:RER_50930 hypothetical protein gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3920 Tpau_3921 Tpau_3921 Tpau_3921 4037908 4038480 + Uracil-DNA glycosylase superfamily PFAM: Uracil-DNA glycosylase superfamily~KEGG: rop:ROP_59560 G/U mismatch-specific DNA glycosylase gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3921 Tpau_3922 Tpau_3922 Tpau_3922 4038702 4045850 + hypothetical protein KEGG: spn:SP_1772 cell wall surface anchor family protein gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3922 Tpau_3923 Tpau_3923 Tpau_3923 4045901 4047259 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: rha:RHA1_ro04330 major facilitator transporter gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3923 Tpau_3924 Tpau_3924 Tpau_3924 4047283 4048491 + Na+/H+ antiporter NhaA KEGG: rha:RHA1_ro04329 Na+/H+ antiporter 1~TIGRFAM: Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter NhaA%3B sodium/hydrogen exchanger gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3924 Tpau_3925 Tpau_3925 Tpau_3925 4048542 4049057 + protein of unknown function DUF1469 PFAM: protein of unknown function DUF1469~KEGG: mab:MAB_0423c hypothetical protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3925 Tpau_3926 Tpau_3926 Tpau_3926 4049070 4050038 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: nfa:nfa3520 putative hydrolase gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3926 Tpau_3927 Tpau_3927 Tpau_3927 4050072 4051277 - Colicin V production protein PFAM: Colicin V production protein%3B peptidase S1 and S6 chymotrypsin/Hap~KEGG: rop:ROP_42360 putative S1C family peptidase gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3927 Tpau_3928 Tpau_3928 Tpau_3928 4051274 4051978 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: msm:MSMEG_6185 NTP pyrophosphohydrolase gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3928 Tpau_3929 Tpau_3929 Tpau_3929 4051975 4052652 - Redoxin domain protein PFAM: Redoxin domain protein%3B alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: rer:RER_04830 thiol-disulfide oxidoreductase gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3929 Tpau_3930 Tpau_3930 Tpau_3930 4052649 4053419 - endonuclease III SMART: HhH-GPD family protein%3B iron-sulfur cluster loop~TIGRFAM: endonuclease III~KEGG: mab:MAB_0418 endonuclease III protein~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3930 Tpau_3931 Tpau_3931 Tpau_3931 4053495 4053716 + hypothetical protein KEGG: rop:ROP_42320 hypothetical protein gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3931 Tpau_3932 Tpau_3932 Tpau_3932 4053877 4054551 + transcriptional regulator%2C Crp/Fnr family KEGG: mva:Mvan_5435 CRP/FNR family transcriptional regulator~PFAM: cyclic nucleotide-binding%3B regulatory protein Crp~SMART: cyclic nucleotide-binding%3B regulatory protein Crp gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3932 Tpau_3933 Tpau_3933 Tpau_3933 4054618 4055448 - beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: nfa:nfa3450 putative hydrolase gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3933 Tpau_3934 Tpau_3934 Tpau_3934 4055445 4055915 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: ami:Amir_0241 endoribonuclease L-PSP gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3934 Tpau_3935 Tpau_3935 Tpau_3935 4055912 4056076 - conserved hypothetical protein KEGG: rop:ROP_42280 hypothetical protein gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3935 Tpau_3936 Tpau_3936 Tpau_3936 4056161 4057234 + Anion-transporting ATPase PFAM: Anion-transporting ATPase~KEGG: rer:RER_04660 anion-transporting ATPase gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3936 Tpau_3937 Tpau_3937 Tpau_3937 4057222 4058322 + Anion-transporting ATPase PFAM: Anion-transporting ATPase~KEGG: mgi:Mflv_1367 anion-transporting ATPase gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3937 Tpau_3938 Tpau_3938 Tpau_3938 4058372 4058683 - transcription factor WhiB PFAM: transcription factor WhiB~KEGG: msm:MSMEG_6199 transcription factor WhiB gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3938 Tpau_3939 Tpau_3939 Tpau_3939 4058928 4061450 + Peptidoglycan glycosyltransferase PFAM: glycosyl transferase family 51%3B PASTA domain containing protein%3B penicillin-binding protein transpeptidase~KEGG: rer:RER_04630 penicillin-binding protein 1~SMART: PASTA domain containing protein gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3939 Tpau_3940 Tpau_3940 Tpau_3940 4061516 4061746 - hypothetical protein gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3940 Tpau_3941 Tpau_3941 Tpau_3941 4061874 4062641 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rop:ROP_41680 enoyl-CoA hydratase/isomerase family protein gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3941 Tpau_3942 Tpau_3942 Tpau_3942 4062638 4063420 - conserved hypothetical protein KEGG: rha:RHA1_ro02978 hypothetical protein gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3942 Tpau_3943 Tpau_3943 Tpau_3943 4063437 4064093 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rop:ROP_27770 putative TetR family transcriptional regulator gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3943 Tpau_3944 Tpau_3944 Tpau_3944 4064180 4065625 + Carotenoid oxygenase PFAM: Carotenoid oxygenase~KEGG: msm:MSMEG_1564 lignostilbene-alpha%2Cbeta- dioxygenase gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3944 Tpau_3945 Tpau_3945 Tpau_3945 4065622 4066152 - conserved hypothetical protein KEGG: rer:RER_06100 hypothetical protein gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3945 Tpau_3946 Tpau_3946 Tpau_3946 4066225 4066431 + conserved hypothetical protein KEGG: mbt:JTY_1181 hypothetical protein gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3946 Tpau_3947 Tpau_3947 Tpau_3947 4066454 4067572 - Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES domain protein%3B Alcohol dehydrogenase zinc-binding domain protein~KEGG: rer:RER_26460 zinc-containing alcohol dehydrogenase gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3947 Tpau_3948 Tpau_3948 Tpau_3948 4067569 4068786 - aminotransferase class-III PFAM: aminotransferase class-III~KEGG: bmr:BMI_II1109 glutamate-1-semialdehyde 2%2C1- aminomutase%2C putative gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3948 Tpau_3949 Tpau_3949 Tpau_3949 4068783 4069799 - Transketolase domain protein PFAM: Transketolase domain protein%3B Transketolase central region~KEGG: rha:RHA1_ro00814 transketolase%2C C-terminal subunit gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3949 Tpau_3950 Tpau_3950 Tpau_3950 4069796 4070671 - Transketolase domain protein PFAM: Transketolase domain protein~KEGG: mno:Mnod_5660 transketolase domain protein gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3950 Tpau_3951 Tpau_3951 Tpau_3951 4070959 4071483 + transcriptional regulator%2C AsnC family KEGG: aau:AAur_pTC10070 AsnC family transcriptional regulator~PFAM: Transcription regulator%2C AsnC-type-like~SMART: Transcription regulator%2C AsnC-type gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3951 Tpau_3952 Tpau_3952 Tpau_3952 4071702 4073168 + Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: sus:Acid_2077 aldehyde dehydrogenase gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3952 Tpau_3953 Tpau_3953 Tpau_3953 4073245 4074702 + amino acid permease-associated region PFAM: amino acid permease-associated region~KEGG: rop:ROP_43930 putative amino acid transporter gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3953 Tpau_3954 Tpau_3954 Tpau_3954 4075299 4075592 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3954 Tpau_3955 Tpau_3955 Tpau_3955 4075592 4076491 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3955 Tpau_3956 Tpau_3956 Tpau_3956 4076571 4079300 - pseudogene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3956 Tpau_3957 Tpau_3957 Tpau_3957 4076968 4077261 + transposase IS3/IS911 family protein PFAM: transposase IS3/IS911 family protein~KEGG: mlu:Mlut_10240 transposase gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3957 Tpau_3958 Tpau_3958 Tpau_3958 4077261 4078160 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: msm:MSMEG_4105 transposase subunit gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3958 Tpau_3959 Tpau_3959 Tpau_3959 4079740 4080693 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: mav:MAV_0445 secreted protein gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3959 Tpau_3960 Tpau_3960 Tpau_3960 4080747 4081211 + conserved hypothetical protein PFAM: Protein of unknown function YOR215C%2C mitochondrial~KEGG: cef:CE0271 hypothetical protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3960 Tpau_3961 Tpau_3961 Tpau_3961 4081214 4081750 + hypothetical protein KEGG: aau:AAur_3952 putative cytosine/purine/uracil/thiamine/allantoin permease family protein gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3961 Tpau_3962 Tpau_3962 Tpau_3962 4081755 4082111 - CrcB protein KEGG: bcv:Bcav_0525 camphor resistance CrcB protein~TIGRFAM: CrcB protein~PFAM: Camphor resistance CrcB protein gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3962 Tpau_3963 Tpau_3963 Tpau_3963 4082119 4082466 - Camphor resistance CrcB protein PFAM: Camphor resistance CrcB protein~KEGG: mab:MAB_2439 hypothetical protein gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3963 Tpau_3964 Tpau_3964 Tpau_3964 4082496 4082921 - peroxiredoxin%2C Ohr subfamily KEGG: mjl:Mjls_5252 OsmC family protein~TIGRFAM: peroxiredoxin%2C Ohr subfamily~PFAM: OsmC family protein gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3964 Tpau_3965 Tpau_3965 Tpau_3965 4083026 4083442 - ferric uptake regulator%2C Fur family PFAM: ferric-uptake regulator~KEGG: nfa:nfa3250 putative ferric uptake regulator gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3965 Tpau_3966 Tpau_3966 Tpau_3966 4083496 4084392 - poly(3-hydroxyalkanoate) depolymerase KEGG: rha:RHA1_ro04489 PHA depolymerase~TIGRFAM: poly(3-hydroxyalkanoate) depolymerase~PFAM: alpha/beta hydrolase fold gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3966 Tpau_3967 Tpau_3967 Tpau_3967 4084389 4084841 - Enoyl-CoA hydratase KEGG: rha:RHA1_ro03777 nodulation protein~PFAM: MaoC domain protein dehydratase gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3967 Tpau_3968 Tpau_3968 Tpau_3968 4084869 4086578 - Poly-beta-hydroxybutyrate polymerase domain protein PFAM: Poly-beta-hydroxybutyrate polymerase domain protein%3B alpha/beta hydrolase fold~KEGG: rha:RHA1_ro04491 poly(3-hydroxyalkanoic acid) synthase gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3968 Tpau_3969 Tpau_3969 Tpau_3969 4086597 4088099 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rha:RHA1_ro04492 acyl-CoA synthetase gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3969 Tpau_3970 Tpau_3970 Tpau_3970 4088224 4089444 - putative transcriptional regulator%2C PucR family KEGG: rha:RHA1_ro04493 hypothetical protein gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3970 Tpau_3971 Tpau_3971 Tpau_3971 4089547 4090386 + transcriptional regulator%2C LysR family PFAM: regulatory protein LysR~KEGG: rha:RHA1_ro00176 LysR family transcriptional regulator gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3971 Tpau_3972 Tpau_3972 Tpau_3972 4090368 4091285 + beta-lactamase PFAM: beta-lactamase~KEGG: rop:ROP_02950 hypothetical protein gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3972 Tpau_3973 Tpau_3973 Tpau_3973 4091357 4093099 + penicillin-binding protein transpeptidase PFAM: penicillin-binding protein transpeptidase~KEGG: msm:MSMEG_6319 penicillin-binding protein%2C transpeptidase gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3973 Tpau_3974 Tpau_3974 Tpau_3974 4093162 4093437 + hypothetical protein gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3974 Tpau_3975 Tpau_3975 Tpau_3975 4093462 4094052 + Phosphoribosylanthranilate isomerase KEGG: rer:RER_48400 phosphoriborylanthranilate isomerase~PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3975 Tpau_3976 Tpau_3976 Tpau_3976 4094112 4094783 + hypothetical protein KEGG: rop:ROP_30510 hypothetical membrane protein gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3976 Tpau_3977 Tpau_3977 Tpau_3977 4094868 4096319 + PepSY-associated TM helix domain protein PFAM: PepSY-associated TM helix domain protein~KEGG: rha:RHA1_ro03324 Fe-regulated membrane protein gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3977 Tpau_3978 Tpau_3978 Tpau_3978 4096383 4096886 + Ferritin Dps family protein PFAM: Ferritin Dps family protein~KEGG: bfa:Bfae_30880 ferritin-like protein gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3978 Tpau_3979 Tpau_3979 Tpau_3979 4096993 4097661 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: sen:SACE_6110 TetR/AcrR family transcriptional regulator gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3979 Tpau_3980 Tpau_3980 Tpau_3980 4097654 4099168 + conserved hypothetical protein KEGG: msm:MSMEG_2315 hypothetical protein gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3980 Tpau_3981 Tpau_3981 Tpau_3981 4099287 4100312 - aspartate-semialdehyde dehydrogenase TIGRFAM: aspartate-semialdehyde dehydrogenase~KEGG: nfa:nfa3190 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase dimerisation region%3B Semialdehyde dehydrogenase NAD - binding gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3981 Tpau_3982 Tpau_3982 Tpau_3982 4100316 4101581 - aspartate kinase KEGG: rha:RHA1_ro04291 aspartate kinase~TIGRFAM: aspartate kinase%3B aspartate kinase%2C monofunctional class~PFAM: aspartate/glutamate/uridylate kinase%3B amino acid-binding ACT domain protein gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3982 Tpau_3983 Tpau_3983 Tpau_3983 4101741 4102496 + conserved hypothetical protein KEGG: mpa:MAP2694 hypothetical protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3983 Tpau_3984 Tpau_3984 Tpau_3984 4102493 4103752 + conserved hypothetical protein KEGG: ami:Amir_0216 hypothetical protein gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3984 Tpau_3985 Tpau_3985 Tpau_3985 4103799 4104002 - MbtH domain protein PFAM: MbtH domain protein~KEGG: mjl:Mjls_3474 MbtH domain-containing protein gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3985 Tpau_3986 Tpau_3986 Tpau_3986 4104054 4104896 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: nfa:nfa31150 putative ABC transporter membrane protein gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3986 Tpau_3987 Tpau_3987 Tpau_3987 4104896 4116256 - amino acid adenylation domain protein TIGRFAM: amino acid adenylation domain protein%3B daunorubicin resistance ABC transporter ATPase subunit~PFAM: AMP-dependent synthetase and ligase%3B Thioesterase%3B ABC transporter related%3B phosphopantetheine- binding%3B condensation domain protein~KEGG: rer:RER_30610 non-ribosomal peptide synthetase~SMART: AAA ATPase gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3987 Tpau_3988 Tpau_3988 Tpau_3988 4116808 4118676 + 2-isopropylmalate synthase KEGG: rer:RER_04110 2-isopropylmalate synthase~TIGRFAM: 2-isopropylmalate synthase~PFAM: pyruvate carboxyltransferase%3B LeuA allosteric (dimerisation) domain gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3988 Tpau_3989 Tpau_3989 Tpau_3989 4118707 4119627 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: aau:AAur_0278 hypothetical protein gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3989 Tpau_3990 Tpau_3990 Tpau_3990 4119668 4121074 + transcriptional regulator%2C GntR family with aminotransferase domain KEGG: rer:RER_10490 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B aminotransferase class I and II~SMART: regulatory protein GntR HTH gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3990 Tpau_3991 Tpau_3991 Tpau_3991 4121075 4122241 - oxidoreductase FAD/NAD(P)-binding domain protein PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein%3B globin~KEGG: rop:ROP_19740 flavohemoprotein gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3991 Tpau_3992 Tpau_3992 Tpau_3992 4122340 4122507 - hypothetical protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3992 Tpau_3993 Tpau_3993 Tpau_3993 4122596 4123402 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: sen:SACE_4214 putative dehydrogenase related to short-chain alcohol dehydrogenases gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3993 Tpau_3994 Tpau_3994 Tpau_3994 4123399 4125114 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein~KEGG: nfa:nfa11470 putative FAD-binding dehydrogenase gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3994 Tpau_3995 Tpau_3995 Tpau_3995 4125211 4125804 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: cai:Caci_5987 transcriptional regulator%2C TetR family gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3995 Tpau_3996 Tpau_3996 Tpau_3996 4125806 4126999 + conserved hypothetical protein KEGG: art:Arth_3538 hypothetical protein gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3996 Tpau_3997 Tpau_3997 Tpau_3997 4126996 4128375 - monooxygenase KEGG: mab:MAB_2482 monooxygenase gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3997 Tpau_3998 Tpau_3998 Tpau_3998 4128372 4129664 - General substrate transporter PFAM: General substrate transporter%3B major facilitator superfamily MFS_1~KEGG: rop:ROP_72140 MFS transporter gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3998 Tpau_3999 Tpau_3999 Tpau_3999 4129722 4130657 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: rop:ROP_41470 putative LysR family transcriptional regulator gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_3999 Tpau_4000 Tpau_4000 Tpau_4000 4130751 4131671 + protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: rer:RER_04080 amino acid efflux protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4000 Tpau_4001 Tpau_4001 Tpau_4001 4131678 4132424 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: mab:MAB_1972c hypothetical protein gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4001 Tpau_4002 Tpau_4002 Tpau_4002 4132463 4133701 + domain of unknown function DUF1727 PFAM: domain of unknown function DUF1727%3B Mur ligase middle domain protein~KEGG: rha:RHA1_ro04218 UDP-N-acetylmuramoylalanine-- D-glutamate ligase gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4002 Tpau_4003 Tpau_4003 Tpau_4003 4133701 4134438 + CobB/CobQ domain protein glutamine amidotransferase PFAM: CobB/CobQ domain protein glutamine amidotransferase~KEGG: rop:ROP_41440 hypothetical protein gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4003 Tpau_4004 Tpau_4004 Tpau_4004 4134441 4134965 - methylated-DNA/protein-cysteinemethyltransferase KEGG: scl:sce0906 methylated-DNA--protein-cysteine methyltransferase~TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4004 Tpau_4005 Tpau_4005 Tpau_4005 4134968 4135462 - cyclase/dehydrase KEGG: sma:SAV_7402 cyclase/dehydrase gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4005 Tpau_4006 Tpau_4006 Tpau_4006 4135472 4136041 - protein of unknown function DUF664 PFAM: protein of unknown function DUF664~KEGG: sco:SCO2990 hypothetical protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4006 Tpau_4007 Tpau_4007 Tpau_4007 4136130 4136672 - conserved hypothetical protein KEGG: sen:SACE_0256 hypothetical protein gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4007 Tpau_4008 Tpau_4008 Tpau_4008 4136675 4137322 - recombination protein RecR TIGRFAM: recombination protein RecR~PFAM: Zinc finger C4-type%2C RecR%3B TOPRIM domain protein~KEGG: mab:MAB_0320 recombination protein RecR~SMART: Toprim sub domain protein gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4008 Tpau_4009 Tpau_4009 Tpau_4009 4137327 4137617 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: mab:MAB_0319 hypothetical protein gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4009 Tpau_4010 Tpau_4010 Tpau_4010 4137728 4138492 + cell wall hydrolase/autolysin KEGG: rer:RER_03890 hydrolase~PFAM: cell wall hydrolase/autolysin~SMART: cell wall hydrolase/autolysin gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4010 Tpau_4011 Tpau_4011 Tpau_4011 4138489 4139406 - pseudouridine synthase PFAM: pseudouridine synthase~KEGG: ami:Amir_5332 pseudouridine synthase gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4011 Tpau_4012 Tpau_4012 Tpau_4012 4139406 4139852 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: rop:ROP_41360 hypothetical protein gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4012 Tpau_4013 Tpau_4013 Tpau_4013 4139948 4141393 + FAD linked oxidase domain protein PFAM: FAD linked oxidase domain protein~KEGG: rop:ROP_41350 hypothetical protein gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4013 Tpau_4014 Tpau_4014 Tpau_4014 4141397 4142704 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: mva:Mvan_5532 cyclopropane-fatty-acyl- phospholipid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid synthase%3B Methyltransferase type 11%3B Methyltransferase type 12 gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4014 Tpau_4015 Tpau_4015 Tpau_4015 4142701 4143162 - conserved hypothetical protein KEGG: mva:Mvan_1748 hypothetical protein gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4015 Tpau_4016 Tpau_4016 Tpau_4016 4143162 4145375 - DNA polymerase III%2C subunits gamma and tau TIGRFAM: DNA polymerase III%2C subunits gamma and tau~KEGG: rop:ROP_41260 DNA polymerase III gamma/tau subunit~SMART: AAA ATPase gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4016 Tpau_4017 Tpau_4017 Tpau_4017 4145405 4145950 - hypothetical protein KEGG: rsk:RSKD131_4448 NosY gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4017 Tpau_4018 Tpau_4018 Tpau_4018 4146071 4147549 - Alkaline phosphatase PFAM: Alkaline phosphatase~KEGG: rer:RER_19780 alkaline phosphatase~SMART: Alkaline phosphatase gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4018 Tpau_4019 Tpau_4019 Tpau_4019 4147617 4148852 - protein of unknown function DUF1212 PFAM: protein of unknown function DUF1212~KEGG: msm:MSMEG_3837 hypothetical protein gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4019 Tpau_4020 Tpau_4020 Tpau_4020 4148842 4150122 - Protein of unknown function DUF2029 PFAM: Protein of unknown function DUF2029~KEGG: rer:RER_03630 glycosyltransferase gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4020 Tpau_4021 Tpau_4021 Tpau_4021 4150148 4151431 - putative transcriptional regulator%2C GntR family KEGG: rop:ROP_41200 aspartate aminotransferase AspT gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4021 Tpau_4022 Tpau_4022 Tpau_4022 4151766 4152215 - Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein%3B Polyketide cyclase/dehydrase~KEGG: rop:ROP_42160 hypothetical protein gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4022 Tpau_4023 Tpau_4023 Tpau_4023 4152260 4153108 + alpha/beta hydrolase fold protein KEGG: fre:Franean1_1509 alpha/beta hydrolase fold gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4023 Tpau_4024 Tpau_4024 Tpau_4024 4153145 4153708 + hypothetical protein KEGG: rop:ROP_55300 hypothetical protein gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4024 Tpau_4025 Tpau_4025 Tpau_4025 4153716 4154876 + hypothetical protein KEGG: mab:MAB_1171c hypothetical protein gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4025 Tpau_4026 Tpau_4026 Tpau_4026 4155007 4155849 + alpha/beta hydrolase fold protein PFAM: alpha/beta hydrolase fold~KEGG: rha:RHA1_ro05146 hydrolase gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4026 Tpau_4027 Tpau_4027 Tpau_4027 4155885 4156268 - conserved hypothetical protein KEGG: mab:MAB_1173c hypothetical protein gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4027 Tpau_4028 Tpau_4028 Tpau_4028 4156342 4157199 - protein of unknown function DUF81 PFAM: protein of unknown function DUF81~KEGG: mab:MAB_1170 hypothetical protein gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4028 Tpau_4029 Tpau_4029 Tpau_4029 4157305 4158204 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: sco:SCO4897 transcriptional regulator gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4029 Tpau_4030 Tpau_4030 Tpau_4030 4158326 4159948 + PE-PPE domain protein PFAM: PE-PPE domain protein~KEGG: msm:MSMEG_2737 PPE family protein gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4030 Tpau_4031 Tpau_4031 Tpau_4031 4159945 4160586 - Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase 1 family protein%3B Polyketide cyclase/dehydrase~KEGG: rop:ROP_55980 hypothetical protein gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4031 Tpau_4032 Tpau_4032 Tpau_4032 4160583 4160921 - transcriptional regulator%2C ArsR family KEGG: rop:ROP_55970 putative ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4032 Tpau_4033 Tpau_4033 Tpau_4033 4160973 4162511 - conserved hypothetical protein KEGG: mmi:MMAR_4416 hypothetical protein gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4033 Tpau_4034 Tpau_4034 Tpau_4034 4162578 4164203 - thiamine pyrophosphate protein central region PFAM: thiamine pyrophosphate protein central region%3B thiamine pyrophosphate protein domain protein TPP- binding%3B thiamine pyrophosphate protein TPP binding domain protein~KEGG: krh:KRH_21370 putative acetolactate synthase large subunit gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4034 Tpau_4035 Tpau_4035 Tpau_4035 4164200 4165870 - Amidohydrolase 3 PFAM: Amidohydrolase 3%3B amidohydrolase~KEGG: rha:RHA1_ro06548 hypothetical protein gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4035 Tpau_4036 Tpau_4036 Tpau_4036 4165867 4167180 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: rha:RHA1_ro06547 major facilitator transporter gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4036 Tpau_4037 Tpau_4037 Tpau_4037 4167397 4168287 + transcriptional regulator%2C AsnC family KEGG: msm:MSMEG_4457 regulatory protein%2C AsnC/Lrp~PFAM: Transcription regulator%2C AsnC-type-like~SMART: Transcription regulator%2C AsnC-type gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4037 Tpau_4038 Tpau_4038 Tpau_4038 4168294 4169388 - DNA primase small subunit PFAM: DNA primase small subunit~KEGG: nca:Noca_3665 hypothetical protein gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4038 Tpau_4039 Tpau_4039 Tpau_4039 4169388 4170416 - ATP dependent DNA ligase PFAM: ATP dependent DNA ligase~KEGG: rop:ROP_51680 ATP-dependent DNA ligase LigC gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4039 Tpau_4040 Tpau_4040 Tpau_4040 4170485 4171018 - protein of unknown function DUF664 PFAM: protein of unknown function DUF664~KEGG: nfa:nfa32260 hypothetical protein gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4040 Tpau_4041 Tpau_4041 Tpau_4041 4171081 4172031 + Helix-turn-helix type 11 domain protein PFAM: Helix-turn-helix type 11 domain protein%3B regulatory protein DeoR~KEGG: nfa:nfa32250 putative transcriptional regulator gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4041 Tpau_4042 Tpau_4042 Tpau_4042 4172041 4172898 + Glutamate--tRNA ligase KEGG: nfa:nfa2690 glutamyl-Q tRNA(Asp) synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4042 Tpau_4043 Tpau_4043 Tpau_4043 4173091 4174056 - transcriptional regulator%2C AraC family KEGG: mgi:Mflv_1693 AraC family transcriptional regulator~PFAM: ThiJ/PfpI domain protein%3B helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4043 Tpau_4044 Tpau_4044 Tpau_4044 4174143 4178291 - queuine tRNA-ribosyltransferase TIGRFAM: queuine tRNA-ribosyltransferase%3B tRNA- guanine transglycosylase%2C various specificities~KEGG: rop:ROP_40970 hypothetical membrane protein~PFAM: Queuine/other tRNA-ribosyltransferase%3B MMPL domain protein gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4044 Tpau_4045 Tpau_4045 Tpau_4045 4178554 4178847 + hypothetical protein gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4045 Tpau_4046 Tpau_4046 Tpau_4046 4178834 4179685 - N-acetyltransferase PFAM: N-acetyltransferase~KEGG: mab:MAB_0013c arylamine N-acetyl transferase gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4046 Tpau_4047 Tpau_4047 Tpau_4047 4179770 4180408 + Protein of unknown function DUF2306%2C membrane PFAM: Protein of unknown function DUF2306%2C membrane~KEGG: mva:Mvan_1316 hypothetical protein gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4047 Tpau_4048 Tpau_4048 Tpau_4048 4180611 4181045 - CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase zinc-binding~KEGG: ami:Amir_0171 CMP/dCMP deaminase zinc-binding gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4048 Tpau_4049 Tpau_4049 Tpau_4049 4181077 4181595 - conserved hypothetical protein KEGG: nfa:nfa2370 hypothetical protein gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4049 Tpau_4050 Tpau_4050 Tpau_4050 4181682 4182650 + Prephenate dehydrogenase PFAM: Prephenate dehydrogenase%3B NAD-dependent glycerol-3-phosphate dehydrogenase domain protein%3B 6- phosphogluconate dehydrogenase NAD-binding~KEGG: rer:RER_03280 prephenate dehydrogenase gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4050 Tpau_4051 Tpau_4051 Tpau_4051 4182647 4183225 - protein of unknown function DUF1089 PFAM: protein of unknown function DUF1089~KEGG: rop:ROP_40830 hypothetical protein gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4051 Tpau_4052 Tpau_4052 Tpau_4052 4183332 4183724 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: rer:RER_12050 hypothetical protein gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4052 Tpau_4053 Tpau_4053 Tpau_4053 4183727 4184173 - conserved hypothetical protein KEGG: rer:RER_17010 hypothetical protein gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4053 Tpau_4054 Tpau_4054 Tpau_4054 4184536 4184728 + pseudogene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4054 Tpau_4055 Tpau_4055 Tpau_4055 4184785 4186158 - Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4055 Tpau_4056 Tpau_4056 Tpau_4056 4186220 4188187 + peptidase S15 PFAM: peptidase S15%3B X-Pro dipeptidyl-peptidase domain protein~KEGG: rha:RHA1_ro04896 hypothetical protein gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4056 Tpau_4057 Tpau_4057 Tpau_4057 4188257 4189486 + putative phytochrome sensor protein PFAM: transcriptional regulator domain protein%3B GAF domain protein~KEGG: msm:MSMEG_1542 transcriptional regulator gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4057 Tpau_4058 Tpau_4058 Tpau_4058 4189589 4191112 + Aldehyde dehydrogenase (NAD(+)) KEGG: rop:ROP_61390 aldehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4058 Tpau_4059 Tpau_4059 Tpau_4059 4191588 4192307 + phosphoesterase PA-phosphatase related protein KEGG: rha:RHA1_ro08553 membrane-associated phosphatase~PFAM: phosphoesterase PA-phosphatase related~SMART: phosphoesterase PA-phosphatase related gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4059 Tpau_4060 Tpau_4060 Tpau_4060 4192255 4192665 - Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: mva:Mvan_4934 carboxymuconolactone decarboxylase gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4060 Tpau_4061 Tpau_4061 Tpau_4061 4192724 4193101 - protein of unknown function DUF779 PFAM: protein of unknown function DUF779~KEGG: krh:KRH_16910 hypothetical protein gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4061 Tpau_4062 Tpau_4062 Tpau_4062 4193287 4193385 + hypothetical protein gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4062 Tpau_4063 Tpau_4063 Tpau_4063 4193815 4194351 - conserved hypothetical protein KEGG: mab:MAB_1249 hypothetical protein gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4063 Tpau_4064 Tpau_4064 Tpau_4064 4194422 4194982 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mab:MAB_1248 RNA polymerase sigma factor~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2 gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4064 Tpau_4065 Tpau_4065 Tpau_4065 4195096 4195563 + protein of unknown function DUF322 PFAM: protein of unknown function DUF322~KEGG: mab:MAB_1247c hypothetical protein gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4065 Tpau_4066 Tpau_4066 Tpau_4066 4195560 4195880 + response regulator receiver protein KEGG: mab:MAB_1246c hypothetical protein gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4066 Tpau_4067 Tpau_4067 Tpau_4067 4195877 4196059 + conserved hypothetical protein KEGG: mab:MAB_1244c hypothetical protein gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4067 Tpau_4068 Tpau_4068 Tpau_4068 4196062 4196838 + conserved hypothetical protein KEGG: mab:MAB_1243c hypothetical protein gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4068 Tpau_4069 Tpau_4069 Tpau_4069 4196835 4197410 + conserved hypothetical protein KEGG: mab:MAB_1242c hypothetical protein gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4069 Tpau_4070 Tpau_4070 Tpau_4070 4197466 4197675 + CsbD family protein PFAM: CsbD family protein~KEGG: mab:MAB_1241c hypothetical protein gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4070 Tpau_4071 Tpau_4071 Tpau_4071 4197750 4198373 - cyclase family protein PFAM: cyclase family protein~KEGG: kra:Krad_3853 cyclase family protein gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4071 Tpau_4072 Tpau_4072 Tpau_4072 4198370 4199722 - permease for cytosine/purines uracil thiamine allantoin PFAM: permease for cytosine/purines uracil thiamine allantoin~KEGG: pmy:Pmen_1794 permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4072 Tpau_4073 Tpau_4073 Tpau_4073 4199722 4200117 - conserved hypothetical protein KEGG: sma:SAV_790 hypothetical protein gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4073 Tpau_4074 Tpau_4074 Tpau_4074 4200337 4201212 + transcriptional regulator%2C AsnC family KEGG: msm:MSMEG_4457 regulatory protein%2C AsnC/Lrp~PFAM: Transcription regulator%2C AsnC-type-like~SMART: Transcription regulator%2C AsnC-type gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4074 Tpau_4075 Tpau_4075 Tpau_4075 4201255 4202346 + histidinol-phosphate aminotransferase KEGG: rha:RHA1_ro04128 putative aminotransferase~TIGRFAM: histidinol-phosphate aminotransferase~PFAM: aminotransferase class I and II gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4075 Tpau_4076 Tpau_4076 Tpau_4076 4202343 4202777 + conserved hypothetical protein KEGG: rop:ROP_35380 hypothetical protein gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4076 Tpau_4077 Tpau_4077 Tpau_4077 4202750 4203928 - conserved hypothetical protein KEGG: rop:ROP_15670 hypothetical protein gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4077 Tpau_4078 Tpau_4078 Tpau_4078 4203925 4205061 - acyltransferase 3 PFAM: acyltransferase 3~KEGG: msm:MSMEG_5041 acyltransferase gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4078 Tpau_4079 Tpau_4079 Tpau_4079 4205087 4206052 - transcriptional regulator%2C AraC family KEGG: msm:MSMEG_5193 transcriptional regulator%2C AraC family protein~PFAM: ThiJ/PfpI domain protein%3B helix-turn-helix- domain containing protein AraC type~SMART: Helix-turn-helix%2C AraC domain gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4079 Tpau_4080 Tpau_4080 Tpau_4080 4206123 4207397 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: msm:MSMEG_5194 integral membrane protein gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4080 Tpau_4081 Tpau_4081 Tpau_4081 4207419 4208120 - conserved hypothetical protein KEGG: sgr:SGR_4345 hypothetical protein gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4081 Tpau_4082 Tpau_4082 Tpau_4082 4208169 4208951 - protein of unknown function DUF81 PFAM: protein of unknown function DUF81~KEGG: kse:Ksed_11410 predicted permease gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4082 Tpau_4083 Tpau_4083 Tpau_4083 4208977 4209486 + protein of unknown function DUF1470 PFAM: protein of unknown function DUF1470~KEGG: rop:ROP_21400 hypothetical protein gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4083 Tpau_4084 Tpau_4084 Tpau_4084 4209559 4210116 + conserved hypothetical protein KEGG: nfa:nfa51180 hypothetical protein gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4084 Tpau_4085 Tpau_4085 Tpau_4085 4210169 4211128 - Protein of unknown function DUF2236 PFAM: Protein of unknown function DUF2236~KEGG: msm:MSMEG_6722 hypothetical protein gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4085 Tpau_4086 Tpau_4086 Tpau_4086 4211180 4211467 - Domain of unknown function DUF1905 PFAM: Domain of unknown function DUF1905~KEGG: rop:ROP_36430 hypothetical protein gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4086 Tpau_4087 Tpau_4087 Tpau_4087 4212366 4213397 + hypothetical protein KEGG: mab:MAB_1891 hypothetical protein gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4087 Tpau_4088 Tpau_4088 Tpau_4088 4213345 4214718 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4088 Tpau_4089 Tpau_4089 Tpau_4089 4214775 4214967 - pseudogene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4089 Tpau_4090 Tpau_4090 Tpau_4090 4215323 4215544 + hypothetical protein gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4090 Tpau_4091 Tpau_4091 Tpau_4091 4215541 4216023 + hypothetical protein KEGG: ami:Amir_0561 WD-40 repeat protein gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4091 Tpau_4092 Tpau_4092 Tpau_4092 4216216 4217982 + hypothetical protein KEGG: mxa:MXAN_7387 chitinase%2C class I gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4092 Tpau_4093 Tpau_4093 Tpau_4093 4218709 4219551 - GP41 protein KEGG: msm:MSMEG_5754 GP41 protein gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4093 Tpau_4094 Tpau_4094 Tpau_4094 4219873 4220850 + NAD(P)H quinone oxidoreductase%2C PIG3 family KEGG: rha:RHA1_ro03100 NADPH:quinone reductase~TIGRFAM: NAD(P)H quinone oxidoreductase%2C PIG3 family~PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4094 Tpau_4095 Tpau_4095 Tpau_4095 4220847 4221842 + conserved hypothetical protein KEGG: abo:ABO_2692 hypothetical protein gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4095 Tpau_4096 Tpau_4096 Tpau_4096 4221839 4222597 + conserved hypothetical protein KEGG: mab:MAB_1644 hypothetical protein gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4096 Tpau_4097 Tpau_4097 Tpau_4097 4222613 4223254 - Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: mmi:MMAR_4164 hypothetical protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4097 Tpau_4098 Tpau_4098 Tpau_4098 4223268 4224524 - cysteine desulfurase family protein KEGG: mjl:Mjls_5370 cysteine desulfurase family protein~TIGRFAM: cysteine desulfurase family protein~PFAM: aminotransferase class V gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4098 Tpau_4099 Tpau_4099 Tpau_4099 4224595 4225104 + Protein of unknown function DUF2587 PFAM: Protein of unknown function DUF2587~KEGG: rer:RER_02610 hypothetical protein gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4099 Tpau_4100 Tpau_4100 Tpau_4100 4225156 4226013 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: cdi:DIP0175 ABC transporter permease gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4100 Tpau_4101 Tpau_4101 Tpau_4101 4226015 4226809 + ABC transporter related protein KEGG: rop:ROP_39770 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4101 Tpau_4102 Tpau_4102 Tpau_4102 4226802 4227743 + glycosyl transferase family 2 PFAM: glycosyl transferase family 2~KEGG: rop:ROP_39760 galactofuranosyltransferase gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4102 Tpau_4103 Tpau_4103 Tpau_4103 4227826 4229463 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: nfa:nfa44960 acyl-CoA synthetase gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4103 Tpau_4104 Tpau_4104 Tpau_4104 4229530 4229946 - DoxX family protein PFAM: DoxX family protein~KEGG: nca:Noca_2081 DoxX family protein gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4104 Tpau_4105 Tpau_4105 Tpau_4105 4230111 4231691 - putative mannosyltransferase KEGG: rop:ROP_39730 putative mannosyltransferase gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4105 Tpau_4106 Tpau_4106 Tpau_4106 4231688 4232128 - GtrA family protein PFAM: GtrA family protein~KEGG: rha:RHA1_ro04079 hypothetical protein gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4106 Tpau_4107 Tpau_4107 Tpau_4107 4232149 4232658 - conserved hypothetical protein KEGG: rer:RER_11240 hypothetical protein gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4107 Tpau_4108 Tpau_4108 Tpau_4108 4232648 4232866 - transcriptional regulator%2C XRE family KEGG: rer:RER_11250 Xre family DNA-binding protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4108 Tpau_4109 Tpau_4109 Tpau_4109 4233018 4233278 + conserved hypothetical protein KEGG: nca:Noca_4603 hypothetical protein gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4109 Tpau_4110 Tpau_4110 Tpau_4110 4233294 4235114 + glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing KEGG: nca:Noca_4602 glutamine--fructose-6-phosphate transaminase~TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: glutamine amidotransferase class-II%3B sugar isomerase (SIS) gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4110 Tpau_4111 Tpau_4111 Tpau_4111 4235115 4236500 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: bfa:Bfae_15470 NAD-dependent aldehyde dehydrogenase gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4111 Tpau_4112 Tpau_4112 Tpau_4112 4236497 4237753 - creatinase PFAM: creatinase%3B peptidase M24~KEGG: ttu:TERTU_4005 peptidase%2C M24 family gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4112 Tpau_4113 Tpau_4113 Tpau_4113 4237750 4239003 - 2%2C4-diaminobutyrate 4-transaminase KEGG: bfa:Bfae_15450 diaminobutyrate aminotransferase~TIGRFAM: 2%2C4-diaminobutyrate 4-transaminase~PFAM: aminotransferase class-III gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4113 Tpau_4114 Tpau_4114 Tpau_4114 4239027 4240184 - amidohydrolase TIGRFAM: amidohydrolase~KEGG: ttu:TERTU_4007 putative amidohydrolase/hippurate hydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4114 Tpau_4115 Tpau_4115 Tpau_4115 4240366 4240599 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: oan:Oant_1441 RNA polymerase sigma factor gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4115 Tpau_4116 Tpau_4116 Tpau_4116 4240631 4241389 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein%3B NAD-dependent epimerase/dehydratase~KEGG: rer:pREC1_0068 putative 3-hydroxyacyl-CoA dehydrogenase gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4116 Tpau_4117 Tpau_4117 Tpau_4117 4241429 4242589 - acyl-CoA dehydrogenase domain protein PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl- CoA dehydrogenase type 2 domain~KEGG: rer:pREC1_0069 acyl-CoA dehydrogenase gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4117 Tpau_4118 Tpau_4118 Tpau_4118 4242697 4243302 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:pREC1_0074 TetR family transcriptional regulator gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4118 Tpau_4119 Tpau_4119 Tpau_4119 4243385 4244815 + FAD linked oxidase domain protein PFAM: FAD linked oxidase domain protein~KEGG: rha:RHA1_ro04078 FAD linked oxidoreductase gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4119 Tpau_4120 Tpau_4120 Tpau_4120 4244849 4245613 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: rer:RER_02340 oxidoreductase gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4120 Tpau_4121 Tpau_4121 Tpau_4121 4245656 4247542 + arabinosyltransferase AftA KEGG: rer:RER_02330 arabinosyltransferase AftA gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4121 Tpau_4122 Tpau_4122 Tpau_4122 4247545 4248372 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: mab:MAB_4790 oxidoreductase gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4122 Tpau_4123 Tpau_4123 Tpau_4123 4248427 4249467 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: cdi:DIP1062 putative iron-siderophore uptake system exported solute-binding component gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4123 Tpau_4124 Tpau_4124 Tpau_4124 4249590 4251254 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: rha:RHA1_ro06188 hypothetical protein gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4124 Tpau_4125 Tpau_4125 Tpau_4125 4251360 4251728 + conserved hypothetical protein KEGG: rle:RL2357 hypothetical protein gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4125 Tpau_4126 Tpau_4126 Tpau_4126 4251782 4252753 + monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding~KEGG: ach:Achl_3547 monooxygenase FAD-binding gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4126 Tpau_4127 Tpau_4127 Tpau_4127 4252792 4254390 - protein of unknown function DUF222 PFAM: protein of unknown function DUF222%3B HNH endonuclease~KEGG: rha:RHA1_ro02511 hypothetical protein gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4127 Tpau_4128 Tpau_4128 Tpau_4128 4254416 4254511 - hypothetical protein gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4128 Tpau_4129 Tpau_4129 Tpau_4129 4254713 4255288 - cobalt transport protein PFAM: cobalt transport protein~KEGG: sen:SACE_1190 cobalt transport system permease protein gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4129 Tpau_4130 Tpau_4130 Tpau_4130 4255285 4255986 - ABC transporter related protein KEGG: tfu:Tfu_2313 ABC-type cobalt transport system ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4130 Tpau_4131 Tpau_4131 Tpau_4131 4255983 4256552 - BioY protein PFAM: BioY protein~KEGG: lxx:Lxx20880 biotin synthase gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4131 Tpau_4132 Tpau_4132 Tpau_4132 4256593 4257171 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR%3B Tetracyclin repressor domain protein~KEGG: nfa:nfa18310 putative transcriptional regulator gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4132 Tpau_4133 Tpau_4133 Tpau_4133 4257181 4257627 - 3-dehydroquinate dehydratase%2C type II TIGRFAM: 3-dehydroquinate dehydratase%2C type II~KEGG: pfs:PFLU5364 3-dehydroquinate dehydratase~PFAM: dehydroquinase class II gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4133 Tpau_4134 Tpau_4134 Tpau_4134 4257747 4258151 + putative DNA-binding protein KEGG: nfa:nfa5160 putative DNA-binding protein gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4134 Tpau_4135 Tpau_4135 Tpau_4135 4258176 4259228 - hypothetical protein KEGG: rha:RHA1_ro05640 hypothetical protein gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4135 Tpau_4136 Tpau_4136 Tpau_4136 4259225 4259677 - hypothetical protein KEGG: mgi:Mflv_1131 hypothetical protein gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4136 Tpau_4137 Tpau_4137 Tpau_4137 4259821 4263078 + cell wall arabinan synthesis protein PFAM: cell wall arabinan synthesis protein~KEGG: mgi:Mflv_1175 cell wall arabinan synthesis protein gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4137 Tpau_4138 Tpau_4138 Tpau_4138 4263189 4266596 + cell wall arabinan synthesis protein PFAM: cell wall arabinan synthesis protein~KEGG: msm:MSMEG_6388 arabinosyltransferase B gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4138 Tpau_4139 Tpau_4139 Tpau_4139 4266596 4269880 + cell wall arabinan synthesis protein PFAM: cell wall arabinan synthesis protein~KEGG: rop:ROP_39460 arabinosyltransferase gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4139 Tpau_4140 Tpau_4140 Tpau_4140 4269939 4270526 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mab:MAB_2959 putative acetyltransferase gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4140 Tpau_4141 Tpau_4141 Tpau_4141 4270523 4272013 - Carboxylesterase KEGG: tfu:Tfu_2427 putative carboxylesterase~PFAM: Carboxylesterase type B gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4141 Tpau_4142 Tpau_4142 Tpau_4142 4272034 4273842 - choline/carnitine/betaine transporter KEGG: rer:RER_43710 glycine betaine transporter~TIGRFAM: choline/carnitine/betaine transporter~PFAM: BCCT transporter gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4142 Tpau_4143 Tpau_4143 Tpau_4143 4273955 4274635 - protein of unknown function DUF124 PFAM: protein of unknown function DUF124~KEGG: rer:RER_31780 hypothetical protein gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4143 Tpau_4144 Tpau_4144 Tpau_4144 4274645 4275646 - fatty acid desaturase type 2 PFAM: fatty acid desaturase type 2~KEGG: rha:RHA1_ro02258 acyl-[acyl-carrier- protein]desaturase gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4144 Tpau_4145 Tpau_4145 Tpau_4145 4275779 4276429 + two component transcriptional regulator%2C LuxR family KEGG: ace:Acel_0518 two component LuxR family transcriptional regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4145 Tpau_4146 Tpau_4146 Tpau_4146 4276435 4276713 - hypothetical protein gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4146 Tpau_4147 Tpau_4147 Tpau_4147 4276770 4277915 + GAF sensor signal transduction histidine kinase KEGG: ace:Acel_0516 putative signal transduction histidine kinase~PFAM: GAF domain protein%3B histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~SMART: GAF domain protein%3B ATP-binding region ATPase domain protein gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4147 Tpau_4148 Tpau_4148 Tpau_4148 4277912 4278796 - cysteine dioxygenase type I KEGG: rop:ROP_43340 putative cysteine dioxygenase~PFAM: cysteine dioxygenase type I~SMART: Rhodanese domain protein gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4148 Tpau_4149 Tpau_4149 Tpau_4149 4278872 4279834 - Substrate-binding region of ABC-type glycine betaine transport system PFAM: Substrate-binding region of ABC-type glycine betaine transport system~KEGG: nfa:nfa32500 putative transporter permease gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4149 Tpau_4150 Tpau_4150 Tpau_4150 4279831 4280610 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: nfa:nfa32510 putative ABC transporter permease gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4150 Tpau_4151 Tpau_4151 Tpau_4151 4280607 4281776 - ABC transporter related protein KEGG: nfa:nfa32520 putative ABC transporter ATP- binding protein~PFAM: ABC transporter related%3B CBS domain containing protein~SMART: AAA ATPase gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4151 Tpau_4152 Tpau_4152 Tpau_4152 4281820 4282464 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: nfa:nfa32530 putative transporter gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4152 Tpau_4153 Tpau_4153 Tpau_4153 4282538 4283149 - protein of unknown function DUF1345 PFAM: protein of unknown function DUF1345~KEGG: msl:Msil_0817 protein of unknown function DUF1345 gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4153 Tpau_4154 Tpau_4154 Tpau_4154 4283200 4283541 + conserved hypothetical protein KEGG: hypothetical protein gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4154 Tpau_4155 Tpau_4155 Tpau_4155 4283549 4284058 - TspO and MBR like protein PFAM: TspO/MBR family protein~KEGG: mab:MAB_2223 putative TspO/MBR-related protein precursor gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4155 Tpau_4156 Tpau_4156 Tpau_4156 4284146 4284298 - hypothetical protein gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4156 Tpau_4157 Tpau_4157 Tpau_4157 4284627 4285079 + heat shock protein Hsp20 PFAM: heat shock protein Hsp20~KEGG: mva:Mvan_4943 heat shock protein HSP20 gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4157 Tpau_4158 Tpau_4158 Tpau_4158 4285103 4285279 + hypothetical protein gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4158 Tpau_4159 Tpau_4159 Tpau_4159 4285385 4285735 + hypothetical protein gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4159 Tpau_4160 Tpau_4160 Tpau_4160 4285690 4286490 - pentapeptide repeat-containing protein KEGG: nca:Noca_2675 pentapeptide repeat-containing protein gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4160 Tpau_4161 Tpau_4161 Tpau_4161 4286544 4287383 - short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: mgi:Mflv_0930 short-chain dehydrogenase/reductase SDR gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4161 Tpau_4162 Tpau_4162 Tpau_4162 4287380 4287724 - conserved hypothetical protein KEGG: mgi:Mflv_0931 hypothetical protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4162 Tpau_4163 Tpau_4163 Tpau_4163 4287865 4288692 + transcriptional regulator%2C MerR family KEGG: mgi:Mflv_0932 MerR family transcriptional regulator~PFAM: regulatory protein MerR%3B Transcription regulator MerR DNA binding~SMART: regulatory protein MerR gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4163 Tpau_4164 Tpau_4164 Tpau_4164 4288707 4290116 - replicative DNA helicase TIGRFAM: replicative DNA helicase~PFAM: DnaB domain protein helicase domain protein~KEGG: rha:RHA1_ro03428 replicative DNA helicase~SMART: AAA ATPase gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4164 Tpau_4165 Tpau_4165 Tpau_4165 4290666 4291163 + conserved hypothetical protein KEGG: rha:RHA1_ro02960 hypothetical protein gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4165 Tpau_4166 Tpau_4166 Tpau_4166 4291227 4291679 - ribosomal protein L9 KEGG: nfa:nfa55750 50S ribosomal protein L9~TIGRFAM: ribosomal protein L9~PFAM: Ribosomal protein L9-like gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4166 Tpau_4167 Tpau_4167 Tpau_4167 4291693 4291950 - ribosomal protein S18 KEGG: mlb:MLBr_02683 30S ribosomal protein S18~TIGRFAM: ribosomal protein S18~PFAM: ribosomal protein S18 gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4167 Tpau_4168 Tpau_4168 Tpau_4168 4292020 4292553 - single-strand binding protein KEGG: nfa:nfa55730 single-stranded DNA-binding protein~TIGRFAM: single-strand binding protein~PFAM: single-strand binding protein/Primosomal replication protein n gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4168 Tpau_4169 Tpau_4169 Tpau_4169 4292591 4292875 - ribosomal protein S6 KEGG: mva:Mvan_6034 30S ribosomal protein S6~TIGRFAM: ribosomal protein S6~PFAM: ribosomal protein S6 gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4169 Tpau_4170 Tpau_4170 Tpau_4170 4293091 4293948 + protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: nfa:nfa11130 putative YrbE family protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4170 Tpau_4171 Tpau_4171 Tpau_4171 4293954 4294811 + protein of unknown function DUF140 PFAM: protein of unknown function DUF140~KEGG: nfa:nfa11140 putative YrbE family protein gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4171 Tpau_4172 Tpau_4172 Tpau_4172 4294814 4295830 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11150 putative Mce family protein gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4172 Tpau_4173 Tpau_4173 Tpau_4173 4295827 4296849 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11160 putative Mce family protein gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4173 Tpau_4174 Tpau_4174 Tpau_4174 4296837 4297940 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11170 putative Mce family protein gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4174 Tpau_4175 Tpau_4175 Tpau_4175 4297940 4299052 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11180 putative Mce family protein gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4175 Tpau_4176 Tpau_4176 Tpau_4176 4299049 4300086 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11190 putative Mce family protein gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4176 Tpau_4177 Tpau_4177 Tpau_4177 4300083 4301153 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related domain protein~KEGG: nfa:nfa11200 putative Mce family protein gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4177 Tpau_4178 Tpau_4178 Tpau_4178 4301156 4301902 + hypothetical protein KEGG: nfa:nfa6070 hypothetical protein gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4178 Tpau_4179 Tpau_4179 Tpau_4179 4301899 4303089 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rha:RHA1_ro06113 transcriptional regulator gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4179 Tpau_4180 Tpau_4180 Tpau_4180 4303221 4304168 + Protein of unknown function DUF2236 PFAM: Protein of unknown function DUF2236~KEGG: msm:MSMEG_3590 hypothetical protein gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4180 Tpau_4181 Tpau_4181 Tpau_4181 4304235 4305818 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: msm:MSMEG_0131 acyl-CoA synthetase gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4181 Tpau_4182 Tpau_4182 Tpau_4182 4305930 4307138 + acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: svi:Svir_30250 acetyl-CoA acetyltransferase~PFAM: Thiolase gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4182 Tpau_4183 Tpau_4183 Tpau_4183 4307172 4309361 + 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding%3B Enoyl-CoA hydratase/isomerase%3B 3-hydroxyacyl-CoA dehydrogenase domain protein~KEGG: mab:MAB_0851 fatty oxidation protein FadB gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4183 Tpau_4184 Tpau_4184 Tpau_4184 4309450 4309971 - protein of unknown function DUF805 PFAM: protein of unknown function DUF805~KEGG: aau:AAur_0967 putative protein of unknown function (DUF805) gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4184 Tpau_4185 Tpau_4185 Tpau_4185 4310134 4310895 - Enoyl-CoA hydratase/isomerase PFAM: Enoyl-CoA hydratase/isomerase~KEGG: rer:RER_06490 enoyl-CoA hydratase gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4185 Tpau_4186 Tpau_4186 Tpau_4186 4310892 4311881 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: nfa:nfa55910 putative dioxygenase gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4186 Tpau_4187 Tpau_4187 Tpau_4187 4312008 4313498 + Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase~KEGG: rer:RER_55120 aldehyde dehydrogenase gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4187 Tpau_4188 Tpau_4188 Tpau_4188 4313495 4314346 + conserved hypothetical protein KEGG: rha:RHA1_ro06112 hypothetical protein gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4188 Tpau_4189 Tpau_4189 Tpau_4189 4314370 4314888 - putative lipoprotein LpqJ KEGG: mva:Mvan_0631 putative lipoprotein LpqJ gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4189 Tpau_4190 Tpau_4190 Tpau_4190 4315024 4316469 + conserved hypothetical protein KEGG: rop:ROP_32270 hypothetical membrane protein gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4190 Tpau_4191 Tpau_4191 Tpau_4191 4316259 4317917 - conserved hypothetical protein KEGG: rer:RER_58370 hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4191 Tpau_4192 Tpau_4192 Tpau_4192 4317914 4320766 - Peptidoglycan glycosyltransferase KEGG: nfa:nfa55570 putative penicillin-binding protein~PFAM: glycosyl transferase family 51%3B penicillin- binding protein transpeptidase gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4192 Tpau_4193 Tpau_4193 Tpau_4193 4320822 4321220 - conserved hypothetical protein KEGG: rha:RHA1_ro03442 hypothetical protein gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4193 Tpau_4194 Tpau_4194 Tpau_4194 4321423 4322022 + transcriptional regulator%2C PadR-like family PFAM: transcriptional regulator PadR family protein~KEGG: rha:RHA1_ro03446 PadR family transcriptional regulator gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4194 Tpau_4195 Tpau_4195 Tpau_4195 4322000 4323112 + inositol 1-phosphate synthase KEGG: rer:RER_58450 myo-inositol-1-phosphate synthase~TIGRFAM: inositol 1-phosphate synthase~PFAM: Myo-inositol-1-phosphate synthase%3B Myo- inositol-1-phosphate synthase GAPDH domain protein gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4195 Tpau_4196 Tpau_4196 Tpau_4196 4323254 4324003 + conserved hypothetical protein KEGG: rha:RHA1_ro01376 hypothetical protein gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4196 Tpau_4197 Tpau_4197 Tpau_4197 4324112 4326115 - oligopeptide transporter%2C OPT family KEGG: msm:MSMEG_1311 oligopeptide transporter%2C OPT family protein~TIGRFAM: oligopeptide transporter%2C OPT family%3B oligopeptide transporters%2C OPT superfamily~PFAM: Oligopeptide transporter OPT superfamily protein gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4197 Tpau_4198 Tpau_4198 Tpau_4198 4326241 4327149 + Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: saq:Sare_0082 luciferase family protein gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4198 Tpau_4199 Tpau_4199 Tpau_4199 4327287 4328036 - hypothetical protein gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4199 Tpau_4200 Tpau_4200 Tpau_4200 4328151 4328717 - pseudogene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4200 Tpau_4201 Tpau_4201 Tpau_4201 4329528 4330622 + protein of unknown function DUF475 PFAM: protein of unknown function DUF475%3B Integral membrane protein TerC~KEGG: nfa:nfa55690 hypothetical protein gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4201 Tpau_4202 Tpau_4202 Tpau_4202 4330731 4332785 + protein of unknown function DUF839 PFAM: protein of unknown function DUF839~KEGG: rop:ROP_32770 putative phosphatase gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4202 Tpau_4203 Tpau_4203 Tpau_4203 4332887 4333372 + transcriptional regulator%2C MarR family KEGG: ach:Achl_3782 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4203 Tpau_4204 Tpau_4204 Tpau_4204 4333448 4334716 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: sen:SACE_7328 multidrug resistance efflux transporter gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4204 Tpau_4205 Tpau_4205 Tpau_4205 4334796 4335473 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: nfa:nfa55260 short chain dehydrogenase gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4205 Tpau_4206 Tpau_4206 Tpau_4206 4335514 4336701 - ROK family protein PFAM: ROK family protein~KEGG: rha:RHA1_ro02370 xylose repressor gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4206 Tpau_4207 Tpau_4207 Tpau_4207 4336831 4338309 + glucose-6-phosphate 1-dehydrogenase TIGRFAM: glucose-6-phosphate 1-dehydrogenase~KEGG: rha:RHA1_ro02369 glucose-6-phosphate 1- dehydrogenase~PFAM: glucose-6-phosphate dehydrogenase gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4207 Tpau_4208 Tpau_4208 Tpau_4208 4338306 4340159 + 6-phosphogluconate dehydratase TIGRFAM: 6-phosphogluconate dehydratase~KEGG: rha:RHA1_ro02368 phosphogluconate dehydratase~PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4208 Tpau_4209 Tpau_4209 Tpau_4209 4340156 4340797 + 2-dehydro-3-deoxyphosphogluconate aldolase/4- hydroxy-2-oxoglutarate aldolase TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~KEGG: rop:ROP_20810 4-hydroxy-2-oxoglutarate/2- dehydro-3-deoxy-phosphogluconate aldolase~PFAM: KDPG and KHG aldolase gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4209 Tpau_4210 Tpau_4210 Tpau_4210 4340844 4342091 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: rsh:Rsph17029_3438 inner-membrane translocator gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4210 Tpau_4211 Tpau_4211 Tpau_4211 4342084 4342914 - ABC transporter related protein KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4211 Tpau_4212 Tpau_4212 Tpau_4212 4342914 4344014 - solute-binding protein KEGG: tfu:Tfu_1922 solute-binding protein gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4212 Tpau_4213 Tpau_4213 Tpau_4213 4344297 4345490 - conserved hypothetical protein KEGG: nca:Noca_3454 hypothetical protein gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4213 Tpau_4214 Tpau_4214 Tpau_4214 4345602 4348460 - leucyl-tRNA synthetase KEGG: rer:RER_59970 leucyl-tRNA synthetase~TIGRFAM: leucyl-tRNA synthetase gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4214 Tpau_4215 Tpau_4215 Tpau_4215 4348474 4348998 + conserved hypothetical protein KEGG: rer:RER_59980 hypothetical protein gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4215 Tpau_4216 Tpau_4216 Tpau_4216 4348999 4349988 + Bile acid:sodium symporter PFAM: Bile acid:sodium symporter~KEGG: pac:PPA1527 sodium/bile acid symporter family protein gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4216 Tpau_4217 Tpau_4217 Tpau_4217 4350005 4350379 - hypothetical protein gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4217 Tpau_4218 Tpau_4218 Tpau_4218 4350517 4350903 + transcriptional regulator%2C MarR family PFAM: regulatory protein MarR~KEGG: mva:Mvan_4344 MarR family transcriptional regulator gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4218 Tpau_4219 Tpau_4219 Tpau_4219 4350929 4351558 - protein of unknown function DUF179 PFAM: protein of unknown function DUF179~KEGG: mmi:MMAR_0053 hypothetical protein gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4219 Tpau_4220 Tpau_4220 Tpau_4220 4351634 4352959 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: rop:ROP_34530 hypothetical membrane protein gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4220 Tpau_4221 Tpau_4221 Tpau_4221 4352961 4353482 + conserved hypothetical protein KEGG: mva:Mvan_6060 hypothetical protein gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4221 Tpau_4222 Tpau_4222 Tpau_4222 4353502 4353999 + hypothetical protein gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4222 Tpau_4223 Tpau_4223 Tpau_4223 4354000 4355460 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase TIGRFAM: tRNA adenylyltransferase%3B metal dependent phophohydrolase~PFAM: Polynucleotide adenylyltransferase region%3B metal-dependent phosphohydrolase HD sub domain~KEGG: rop:ROP_34610 tRNA nucleotidyltransferase~SMART: metal-dependent phosphohydrolase HD region gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4223 Tpau_4224 Tpau_4224 Tpau_4224 4355579 4356487 + NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: mjl:Mjls_5774 NUDIX hydrolase gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4224 Tpau_4225 Tpau_4225 Tpau_4225 4356484 4358979 + glycoprotein KEGG: rha:RHA1_ro03643 glycoprotein gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4225 Tpau_4226 Tpau_4226 Tpau_4226 4358976 4362635 + virulence factor MVIN family protein PFAM: virulence factor MVIN family protein~KEGG: rop:ROP_34640 hypothetical membrane protein gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4226 Tpau_4227 Tpau_4227 Tpau_4227 4362607 4363485 - hypothetical protein KEGG: rsh:Rsph17029_0723 ATP-dependent helicase HrpB gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4227 Tpau_4228 Tpau_4228 Tpau_4228 4363628 4364233 + DNA-3-methyladenine glycosylase I TIGRFAM: DNA-3-methyladenine glycosylase I~KEGG: sen:SACE_6025 DNA-3-methyladenine glycosylase I protein~PFAM: methyladenine glycosylase gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4228 Tpau_4229 Tpau_4229 Tpau_4229 4364240 4367674 - Aldehyde Dehydrogenase PFAM: Aldehyde Dehydrogenase%3B Proline dehydrogenase~KEGG: ckp:ckrop_0287 delta-1-pyrroline-5- carboxylate dehydrogenase gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4229 Tpau_4230 Tpau_4230 Tpau_4230 4367898 4368536 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: cai:Caci_9040 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2%3B sigma-70 region 4 domain protein gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4230 Tpau_4231 Tpau_4231 Tpau_4231 4368659 4369378 + hypothetical protein KEGG: mav:MAV_5300 hypothetical protein gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4231 Tpau_4232 Tpau_4232 Tpau_4232 4369483 4370439 + thioredoxin reductase KEGG: mva:Mvan_6067 thioredoxin reductase~TIGRFAM: thioredoxin reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B HI0933 family protein gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4232 Tpau_4233 Tpau_4233 Tpau_4233 4370481 4370816 + thioredoxin KEGG: msm:MSMEG_6934 thioredoxin~TIGRFAM: thioredoxin~PFAM: Thioredoxin domain gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4233 Tpau_4234 Tpau_4234 Tpau_4234 4370914 4372101 + cell wall hydrolase/autolysin KEGG: rha:RHA1_ro03652 N-acetylmuramoyl-L-alanine amidase~PFAM: cell wall hydrolase/autolysin%3B Peptidoglycan- binding domain 1 protein~SMART: cell wall hydrolase/autolysin gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4234 Tpau_4235 Tpau_4235 Tpau_4235 4372138 4372857 - conserved hypothetical protein KEGG: mva:Mvan_6070 hypothetical protein gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4235 Tpau_4236 Tpau_4236 Tpau_4236 4372865 4373890 - parB-like partition protein TIGRFAM: parB-like partition protein~PFAM: ParB domain protein nuclease~KEGG: msm:MSMEG_6938 ParB-like partition proteins~SMART: ParB domain protein nuclease gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4236 Tpau_4237 Tpau_4237 Tpau_4237 4373893 4374807 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase~KEGG: rha:RHA1_ro03655 chromosome partitioning protein ParA gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4237 Tpau_4238 Tpau_4238 Tpau_4238 4375912 4376631 - methyltransferase GidB KEGG: rop:ROP_34760 methyltransferase GidB~TIGRFAM: methyltransferase GidB~PFAM: glucose inhibited division protein gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4238 Tpau_4239 Tpau_4239 Tpau_4239 4376745 4377284 - single-stranded nucleic acid binding R3H domain protein KEGG: rer:RER_60300 hypothetical protein~PFAM: single-stranded nucleic acid binding R3H domain protein~SMART: single-stranded nucleic acid binding R3H domain protein gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4239 Tpau_4240 Tpau_4240 Tpau_4240 4377327 4378499 - membrane protein insertase%2C YidC/Oxa1 family KEGG: rer:RER_60310 OxaA family protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family~PFAM: 60 kDa inner membrane insertion protein gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4240 Tpau_4241 Tpau_4241 Tpau_4241 4378575 4378799 - protein of unknown function DUF37 PFAM: protein of unknown function DUF37~KEGG: rha:RHA1_ro03663 hypothetical protein gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4241 Tpau_4242 Tpau_4242 Tpau_4242 4378814 4379242 - ribonuclease P protein component KEGG: nfa:nfa56720 ribonuclease P~TIGRFAM: ribonuclease P protein component~PFAM: ribonuclease P protein gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4242 Tpau_4243 Tpau_4243 Tpau_4243 4379331 4379474 - ribosomal protein L34 KEGG: cgt:cgR_2989 50S ribosomal protein L34~TIGRFAM: ribosomal protein L34~PFAM: ribosomal protein L34 gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4243 Tpau_4244 Tpau_4244 Tpau_4244 823 1935 - HTTM domain protein SMART: HTTM domain protein~KEGG: mxa:MXAN_6615 hypothetical protein gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4244 Tpau_4245 Tpau_4245 Tpau_4245 1929 2570 - hypothetical protein KEGG: mxa:MXAN_6614 hypothetical protein gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4245 Tpau_4246 Tpau_4246 Tpau_4246 2563 3234 - hypothetical protein gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4246 Tpau_4247 Tpau_4247 Tpau_4247 3454 3741 + hypothetical protein gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4247 Tpau_4248 Tpau_4248 Tpau_4248 3744 4061 + transcriptional regulator%2C CopG family PFAM: CopG domain protein DNA-binding domain protein~KEGG: pac:PPA1305 hypothetical protein gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4248 Tpau_4249 Tpau_4249 Tpau_4249 4107 4478 + hypothetical protein gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4249 Tpau_4250 Tpau_4250 Tpau_4250 4960 5262 + Abortive infection protein PFAM: Abortive infection protein~KEGG: noc:Noc_1923 abortive infection protein gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4250 Tpau_4251 Tpau_4251 Tpau_4251 5292 5924 - hypothetical protein KEGG: rer:pREC1_0014 hypothetical protein gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4251 Tpau_4252 Tpau_4252 Tpau_4252 5938 6675 - conserved hypothetical protein KEGG: mva:Mvan_5331 hypothetical protein gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4252 Tpau_4253 Tpau_4253 Tpau_4253 6672 7700 - permease PFAM: permease~KEGG: stp:Strop_2851 permease gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4253 Tpau_4254 Tpau_4254 Tpau_4254 7731 8051 - conserved hypothetical protein KEGG: afw:Anae109_2960 hypothetical protein gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4254 Tpau_4255 Tpau_4255 Tpau_4255 8051 8527 - conserved hypothetical protein KEGG: mxa:MXAN_2707 hypothetical protein gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4255 Tpau_4256 Tpau_4256 Tpau_4256 9354 12434 + TrwC relaxase PFAM: TrwC relaxase~KEGG: aau:AAur_pTC10080 putative TraA-like conjugal transfer protein gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4256 Tpau_4257 Tpau_4257 Tpau_4257 12550 12906 + pseudogene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4257 Tpau_4258 Tpau_4258 Tpau_4258 13134 13361 - pseudogene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4258 Tpau_4259 Tpau_4259 Tpau_4259 13384 13950 + hypothetical protein gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4259 Tpau_4260 Tpau_4260 Tpau_4260 14005 14316 + hypothetical protein gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4260 Tpau_4261 Tpau_4261 Tpau_4261 14340 14921 + cobyrinic acid a%2Cc-diamide synthase KEGG: mgi:Mflv_5598 cobyrinic acid a%2Cc-diamide synthase gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4261 Tpau_4262 Tpau_4262 Tpau_4262 14918 15145 + hypothetical protein gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4262 Tpau_4263 Tpau_4263 Tpau_4263 15252 15629 - conserved hypothetical protein KEGG: rha:RHA1_ro00632 hypothetical protein gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4263 Tpau_4264 Tpau_4264 Tpau_4264 16036 16161 + hypothetical protein gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4264 Tpau_4265 Tpau_4265 Tpau_4265 16260 16889 - conserved hypothetical protein KEGG: art:Arth_4435 hypothetical protein gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4265 Tpau_4266 Tpau_4266 Tpau_4266 17015 17683 - conserved hypothetical protein KEGG: ach:Achl_4229 hypothetical protein gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4266 Tpau_4267 Tpau_4267 Tpau_4267 17742 17987 - hypothetical protein KEGG: rer:pREC1_0078 hypothetical protein gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4267 Tpau_4268 Tpau_4268 Tpau_4268 18195 19481 + transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: mul:MUL_4727 transposase for IS2606 gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4268 Tpau_4269 Tpau_4269 Tpau_4269 19904 21115 + transposase IS111A/IS1328/IS1533 PFAM: transposase IS111A/IS1328/IS1533%3B transposase IS116/IS110/IS902 family protein~KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4269 Tpau_4270 Tpau_4270 Tpau_4270 21341 22333 + hypothetical protein KEGG: cmi:CMM_0250 hypothetical protein gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4270 Tpau_4271 Tpau_4271 Tpau_4271 22330 24063 + cell division FtsK/SpoIIIE PFAM: cell divisionFtsK/SpoIIIE~KEGG: mav:MAV_0264 FtsK/SpoIIIE family protein%2C putative gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4271 Tpau_4272 Tpau_4272 Tpau_4272 24158 25690 + Integrase catalytic region PFAM: Integrase catalytic region~KEGG: rer:pREL1_0265 transposase gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4272 Tpau_4273 Tpau_4273 Tpau_4273 25690 26481 + IstB domain protein ATP-binding protein KEGG: rer:pREL1_0264 transposition helper protein~PFAM: IstB domain protein ATP-binding protein~SMART: AAA ATPase gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4273 Tpau_4274 Tpau_4274 Tpau_4274 26591 26869 + glutaredoxin-like protein NrdH KEGG: mkm:Mkms_5535 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit~TIGRFAM: glutaredoxin-like protein NrdH~PFAM: glutaredoxin gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4274 Tpau_4275 Tpau_4275 Tpau_4275 26910 27536 + replicative DNA helicase KEGG: rha:RHA1_ro03165 replicative DNA helicase gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4275 Tpau_4276 Tpau_4276 Tpau_4276 27745 29055 + transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: kse:Ksed_06390 transposase gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4276 Tpau_4277 Tpau_4277 Tpau_4277 29092 29868 + hypothetical protein gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4277 Tpau_4278 Tpau_4278 Tpau_4278 31111 31785 + hypothetical protein KEGG: nfa:pnf11540 hypothetical protein gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4278 Tpau_4279 Tpau_4279 Tpau_4279 31801 32280 + hypothetical protein KEGG: nfa:pnf11550 hypothetical protein gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4279 Tpau_4280 Tpau_4280 Tpau_4280 32315 33106 + conserved hypothetical protein KEGG: mjl:Mjls_0538 hypothetical protein gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4280 Tpau_4281 Tpau_4281 Tpau_4281 33109 34263 - hypothetical protein KEGG: rop:ROP_55310 hypothetical membrane protein gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4281 Tpau_4282 Tpau_4282 Tpau_4282 34273 34770 - hypothetical protein KEGG: nfa:pnf11560 hypothetical protein gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4282 Tpau_4283 Tpau_4283 Tpau_4283 35417 37513 + hypothetical protein KEGG: cmi:pCM2_0032 hypothetical protein gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4283 Tpau_4284 Tpau_4284 Tpau_4284 37920 39206 + transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: mul:MUL_4727 transposase for IS2606 gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4284 Tpau_4285 Tpau_4285 Tpau_4285 39837 40613 - hypothetical protein gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4285 Tpau_4286 Tpau_4286 Tpau_4286 40650 41960 - transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: kse:Ksed_06390 transposase gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4286 Tpau_4287 Tpau_4287 Tpau_4287 42086 43372 - transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: mul:MUL_4727 transposase for IS2606 gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4287 Tpau_4288 Tpau_4288 Tpau_4288 43536 44516 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain%3B dTDP-4-dehydrorhamnose reductase~KEGG: rop:ROP_22800 NAD-dependent epimerase/dehydratase family protein gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4288 Tpau_4289 Tpau_4289 Tpau_4289 44545 45243 + Abortive infection protein PFAM: Abortive infection protein~KEGG: kse:Ksed_01050 CAAX amino terminal protease family gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4289 Tpau_4290 Tpau_4290 Tpau_4290 45265 46644 - Orn/DAP/Arg decarboxylase 2 PFAM: Orn/DAP/Arg decarboxylase 2~KEGG: cgt:cgR_2017 hypothetical protein gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4290 Tpau_4291 Tpau_4291 Tpau_4291 46659 48110 - conserved hypothetical protein KEGG: rba:RB4383 hypothetical protein gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4291 Tpau_4292 Tpau_4292 Tpau_4292 48092 49186 - Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~KEGG: car:cauri_0358 cystathionine beta-synthase gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4292 Tpau_4293 Tpau_4293 Tpau_4293 49646 51019 - conserved hypothetical protein KEGG: mab:MAB_0187 hypothetical protein gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4293 Tpau_4294 Tpau_4294 Tpau_4294 51276 51626 + hypothetical protein KEGG: mkm:Mkms_5822 hypothetical protein gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4294 Tpau_4295 Tpau_4295 Tpau_4295 51999 52796 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase~KEGG: rha:RHA1_ro11263 ATPase%2C ParA type gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4295 Tpau_4296 Tpau_4296 Tpau_4296 52809 53156 + hypothetical protein KEGG: gbm:Gbem_0196 hypothetical protein gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4296 Tpau_4297 Tpau_4297 Tpau_4297 53695 54879 + integrase family protein PFAM: integrase family protein~KEGG: mav:MAV_0292 putative integrase gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4297 Tpau_4298 Tpau_4298 Tpau_4298 54876 55859 + putative recombinase KEGG: nfa:pnf130 putative recombinase gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4298 Tpau_4299 Tpau_4299 Tpau_4299 56220 56417 + conserved hypothetical protein KEGG: msm:MSMEG_1277 hypothetical protein gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4299 Tpau_4300 Tpau_4300 Tpau_4300 56414 56809 + filamentation induced by cAMP protein Fic PFAM: filamentation induced by cAMP protein Fic~KEGG: mgi:Mflv_5211 death-on-curing protein gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4300 Tpau_4301 Tpau_4301 Tpau_4301 57070 57246 + hypothetical protein gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4301 Tpau_4302 Tpau_4302 Tpau_4302 57715 58137 + hypothetical protein gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4302 Tpau_4303 Tpau_4303 Tpau_4303 58257 59033 - hypothetical protein gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4303 Tpau_4304 Tpau_4304 Tpau_4304 59070 60380 - transposase mutator type PFAM: transposase mutator type%3B MULE transposase%2C conserved domain~KEGG: kse:Ksed_06390 transposase gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4304 Tpau_4305 Tpau_4305 Tpau_4305 60688 60846 + pseudogene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4305 Tpau_4306 Tpau_4306 Tpau_4306 61126 62634 + sulphate transporter PFAM: sulphate transporter%3B Sulfate transporter/antisigma-factor antagonist STAS%3B Benzoate membrane transport protein%3B Xanthine/uracil/vitamin C permease~KEGG: rop:ROP_00250 putative SulP family transporter gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4306 Tpau_4307 Tpau_4307 Tpau_4307 62645 63070 + transcriptional regulator%2C MerR family KEGG: mjl:Mjls_0901 MerR family transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4307 Tpau_4308 Tpau_4308 Tpau_4308 63125 63712 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: rer:pREL1_0102 TetR family transcriptional regulator gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4308 Tpau_4309 Tpau_4309 Tpau_4309 63799 63945 + pseudogene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4309 Tpau_4310 Tpau_4310 Tpau_4310 64050 65760 + pseudogene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4310 Tpau_4311 Tpau_4311 Tpau_4311 65787 66263 + pseudogene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4311 Tpau_4312 Tpau_4312 Tpau_4312 66299 66928 - conserved hypothetical protein KEGG: mab:MAB_1891 hypothetical protein gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4312 Tpau_4313 Tpau_4313 Tpau_4313 67292 68646 - pseudogene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4313 Tpau_4314 Tpau_4314 Tpau_4314 68689 68877 + hypothetical protein gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4314 Tpau_4315 Tpau_4315 Tpau_4315 68915 69733 - hypothetical protein KEGG: ckp:ckrop_1419 hypothetical protein gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4315 Tpau_4316 Tpau_4316 Tpau_4316 69730 70494 - ABC transporter related protein KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4316 Tpau_4317 Tpau_4317 Tpau_4317 70504 70986 - hypothetical protein KEGG: rer:RER_35390 hypothetical protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4317 Tpau_4318 Tpau_4318 Tpau_4318 71073 71243 - MbtH domain protein PFAM: MbtH domain protein~KEGG: nfa:nfa50610 putative MbtH family protein gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4318 Tpau_4319 Tpau_4319 Tpau_4319 71248 75429 - amino acid adenylation domain protein KEGG: nfa:nfa7670 putative non-ribosomal peptide synthetase~TIGRFAM: amino acid adenylation domain protein~PFAM: AMP-dependent synthetase and ligase%3B phosphopantetheine-binding%3B condensation domain protein gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4319 Tpau_4320 Tpau_4320 Tpau_4320 75429 80390 - amino acid adenylation domain protein KEGG: nfa:nfa7660 putative non-ribosomal peptide synthetase~TIGRFAM: amino acid adenylation domain protein~PFAM: AMP-dependent synthetase and ligase%3B phosphopantetheine-binding%3B condensation domain protein gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4320 Tpau_4321 Tpau_4321 Tpau_4321 80430 83558 - Acyl transferase PFAM: Acyl transferase%3B KR domain protein%3B short- chain dehydrogenase/reductase SDR%3B NAD-dependent epimerase/dehydratase%3B phosphopantetheine-binding~KEGG: nfa:nfa7650 putative polyketide synthase gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4321 Tpau_4322 Tpau_4322 Tpau_4322 83555 84856 - Beta-ketoacyl synthase PFAM: Beta-ketoacyl synthase~KEGG: nfa:nfa7640 putative polyketide synthase gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4322 Tpau_4323 Tpau_4323 Tpau_4323 84853 85602 - Thioesterase PFAM: Thioesterase~KEGG: nfa:nfa7630 putative thioesterase gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4323 Tpau_4324 Tpau_4324 Tpau_4324 85689 86306 + Siderophore biosynthesis protein%2C conserved region PFAM: Siderophore biosynthesis protein%2C conserved region~KEGG: mab:MAB_3125c hypothetical protein gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4324 Tpau_4325 Tpau_4325 Tpau_4325 86281 87624 - L-lysine 6-monooxygenase (NADPH) KEGG: nfa:nfa7610 putative lysine-N-oxygenase gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4325 Tpau_4326 Tpau_4326 Tpau_4326 87621 91112 - amino acid adenylation domain protein KEGG: nfa:nfa7680 putative non-ribosomal peptide synthetase~TIGRFAM: amino acid adenylation domain protein~PFAM: AMP-dependent synthetase and ligase%3B Non- ribosomal peptide synthetase%3B phosphopantetheine-binding%3B condensation domain protein gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4326 Tpau_4327 Tpau_4327 Tpau_4327 91148 91966 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: rer:RER_18420 ABC transporter permease protein gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4327 Tpau_4328 Tpau_4328 Tpau_4328 91963 92742 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: mav:MAV_2004 ABC-2 type transporter gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4328 Tpau_4329 Tpau_4329 Tpau_4329 92739 93680 - daunorubicin resistance ABC transporter ATPase subunit TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit~PFAM: ABC transporter related~KEGG: rha:RHA1_ro06130 ABC drug resistance transporter%2C ATP-binding protein~SMART: AAA ATPase gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4329 Tpau_4330 Tpau_4330 Tpau_4330 93677 95011 - salicylate synthase KEGG: nfa:nfa6190 salicylate synthase MbtI~TIGRFAM: salicylate synthase~PFAM: Chorismate binding-like gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4330 Tpau_4331 Tpau_4331 Tpau_4331 95049 96701 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: rop:ROP_23290 2%2C3-dihydroxybenzoate-AMP ligase gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4331 Tpau_4332 Tpau_4332 Tpau_4332 96949 97092 + hypothetical protein gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4332 Tpau_4333 Tpau_4333 Tpau_4333 97245 97451 - hypothetical protein gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4333 Tpau_4334 Tpau_4334 Tpau_4334 97524 98861 - conserved hypothetical protein KEGG: mab:MAB_4706c hypothetical protein gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4334 Tpau_4335 Tpau_4335 Tpau_4335 98872 99756 - peptidase S1 and S6 chymotrypsin/Hap PFAM: peptidase S1 and S6 chymotrypsin/Hap~KEGG: aau:AAur_1625 trypsin-like serine protease gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_4335 Tpau_R0001 Tpau_R0001 Tpau_R0001 15571 15647 + tRNA-Ile tRNA-Ile1 tRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0001 Tpau_R0002 Tpau_R0002 Tpau_R0002 15659 15734 + tRNA-Ala tRNA-Ala1 tRNA gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0002 Tpau_R0003 Tpau_R0003 Tpau_R0003 36381 36466 + tRNA-Leu tRNA-Leu1 tRNA gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0003 Tpau_R0004 Tpau_R0004 Tpau_R0004 252992 253068 + tRNA-Met tRNA-Met1 tRNA gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0004 Tpau_R0005 Tpau_R0005 Tpau_R0005 482689 482762 - tRNA-Gly tRNA-Gly4 tRNA gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0005 Tpau_R0006 Tpau_R0006 Tpau_R0006 754033 754118 + tRNA-Tyr tRNA-Tyr1 tRNA gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0006 Tpau_R0007 Tpau_R0007 Tpau_R0007 754251 754323 + tRNA-Thr tRNA-Thr1 tRNA gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0007 Tpau_R0008 Tpau_R0008 Tpau_R0008 754356 754432 + tRNA-Met tRNA-Met2 tRNA gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0008 Tpau_R0009 Tpau_R0009 Tpau_R0009 755811 755883 + tRNA-Trp tRNA-Trp1 tRNA gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0009 Tpau_R0010 Tpau_R0010 Tpau_R0010 1258613 1258685 - tRNA-Arg tRNA-Arg4 tRNA gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0010 Tpau_R0011 Tpau_R0011 Tpau_R0011 1294122 1295628 + 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0011 Tpau_R0012 Tpau_R0012 Tpau_R0012 1296038 1299123 + 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0012 Tpau_R0013 Tpau_R0013 Tpau_R0013 1299258 1299373 + 5S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0013 Tpau_R0014 Tpau_R0014 Tpau_R0014 1339409 1339490 - tRNA-Leu tRNA-Leu5 tRNA gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0014 Tpau_R0015 Tpau_R0015 Tpau_R0015 1384985 1385060 - tRNA-Lys tRNA-Lys2 tRNA gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0015 Tpau_R0016 Tpau_R0016 Tpau_R0016 1393993 1394068 - tRNA-His tRNA-His1 tRNA gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0016 Tpau_R0017 Tpau_R0017 Tpau_R0017 1402240 1402313 + tRNA-Arg tRNA-Arg1 tRNA gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0017 Tpau_R0018 Tpau_R0018 Tpau_R0018 1488928 1488998 + tRNA-Gly tRNA-Gly1 tRNA gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0018 Tpau_R0019 Tpau_R0019 Tpau_R0019 1519058 1519134 + tRNA-Pro tRNA-Pro1 tRNA gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0019 Tpau_R0020 Tpau_R0020 Tpau_R0020 1994722 1994797 - tRNA-Gly tRNA-Gly3 tRNA gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0020 Tpau_R0021 Tpau_R0021 Tpau_R0021 1995065 1995139 - tRNA-Val tRNA-Val3 tRNA gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0021 Tpau_R0022 Tpau_R0022 Tpau_R0022 1995190 1995263 - tRNA-Cys tRNA-Cys1 tRNA gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0022 Tpau_R0023 Tpau_R0023 Tpau_R0023 1995278 1995353 - tRNA-Gly tRNA-Gly2 tRNA gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0023 Tpau_R0024 Tpau_R0024 Tpau_R0024 1995613 1995687 + tRNA-Val tRNA-Val1 tRNA gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0024 Tpau_R0025 Tpau_R0025 Tpau_R0025 2219070 2219155 - tRNA-Leu tRNA-Leu4 tRNA gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0025 Tpau_R0026 Tpau_R0026 Tpau_R0026 2453194 2453267 - tRNA-Pro tRNA-Pro3 tRNA gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0026 Tpau_R0027 Tpau_R0027 Tpau_R0027 2479698 2479813 - 5S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0027 Tpau_R0028 Tpau_R0028 Tpau_R0028 2479948 2483034 - 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0028 Tpau_R0029 Tpau_R0029 Tpau_R0029 2483437 2484943 - 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0029 Tpau_R0030 Tpau_R0030 Tpau_R0030 2575374 2575450 - tRNA-Leu tRNA-Leu3 tRNA gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0030 Tpau_R0031 Tpau_R0031 rnpB rnpB 2815236 2815574 - RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam(RF000 10)%2C score 210.37 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0031 Tpau_R0032 Tpau_R0032 Tpau_R0032 2823995 2824068 - tRNA-Val tRNA-Val2 tRNA gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0032 Tpau_R0033 Tpau_R0033 Tpau_R0033 2837691 2837766 - tRNA-Asn tRNA-Asn1 tRNA gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0033 Tpau_R0034 Tpau_R0034 Tpau_R0034 2841335 2841408 - tRNA-Met tRNA-Met4 tRNA gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0034 Tpau_R0035 Tpau_R0035 Tpau_R0035 2952610 2952682 - tRNA-Glu tRNA-Glu3 tRNA gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0035 Tpau_R0036 Tpau_R0036 Tpau_R0036 2952722 2952794 - tRNA-Glu tRNA-Glu2 tRNA gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0036 Tpau_R0037 Tpau_R0037 Tpau_R0037 2952832 2952903 - tRNA-Gln tRNA-Gln2 tRNA gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0037 Tpau_R0038 Tpau_R0038 Tpau_R0038 3111288 3111360 - tRNA-Ala tRNA-Ala3 tRNA gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0038 Tpau_R0039 Tpau_R0039 ssrA ssrA 3129874 3130243 - tmRNA as predicted by Rfam (RF00023)%2C score 159.17 tmRNA gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0039 Tpau_R0040 Tpau_R0040 Tpau_R0040 3145861 3145937 - tRNA-Met tRNA-Met3 tRNA gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0040 Tpau_R0041 Tpau_R0041 Tpau_R0041 3265440 3265516 + tRNA-Leu tRNA-Leu2 tRNA gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0041 Tpau_R0042 Tpau_R0042 Tpau_R0042 3299507 3299578 - tRNA-Gln tRNA-Gln1 tRNA gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0042 Tpau_R0043 Tpau_R0043 Tpau_R0043 3365011 3365083 - tRNA-Ala tRNA-Ala2 tRNA gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0043 Tpau_R0044 Tpau_R0044 Tpau_R0044 3459495 3459571 + tRNA-Arg tRNA-Arg2 tRNA gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0044 Tpau_R0045 Tpau_R0045 Tpau_R0045 3634686 3634762 - tRNA-Phe tRNA-Phe1 tRNA gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0045 Tpau_R0046 Tpau_R0046 Tpau_R0046 3634808 3634884 - tRNA-Asp tRNA-Asp1 tRNA gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0046 Tpau_R0047 Tpau_R0047 Tpau_R0047 3634910 3634982 - tRNA-Glu tRNA-Glu1 tRNA gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0047 Tpau_R0048 Tpau_R0048 Tpau_R0048 3636443 3636519 - tRNA-Lys tRNA-Lys1 tRNA gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0048 Tpau_R0049 Tpau_R0049 Tpau_R0049 3753133 3753207 + tRNA-Thr tRNA-Thr2 tRNA gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0049 Tpau_R0050 Tpau_R0050 Tpau_R0050 3988586 3988661 + tRNA-Thr tRNA-Thr3 tRNA gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0050 Tpau_R0051 Tpau_R0051 Tpau_R0051 4079611 4079684 - tRNA-Pro tRNA-Pro2 tRNA gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0051 Tpau_R0052 Tpau_R0052 ffs ffs 4151466 4151557 - SRP RNA%3B RNA component of signal recognitionparti cle gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0052 Tpau_R0053 Tpau_R0053 Tpau_R0053 4151622 4151710 + tRNA-Ser tRNA-Ser1 tRNA gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0053 Tpau_R0054 Tpau_R0054 Tpau_R0054 4180474 4180564 - tRNA-Ser tRNA-Ser4 tRNA gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0054 Tpau_R0055 Tpau_R0055 Tpau_R0055 4193498 4193573 - tRNA-Arg tRNA-Arg3 tRNA gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0055 Tpau_R0056 Tpau_R0056 Tpau_R0056 4193611 4193702 - tRNA-Ser tRNA-Ser3 tRNA gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0056 Tpau_R0057 Tpau_R0057 Tpau_R0057 4219698 4219782 - tRNA-Ser tRNA-Ser2 tRNA gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=Tpau_R0057