locus-tag	class	description
J0J69_00005	COG0110	maltose O-acetyltransferase activity
J0J69_00015	COG1846	Transcriptional regulator
J0J69_00020	COG0386	Belongs to the glutathione peroxidase family
J0J69_00040	COG0596	Alpha beta hydrolase
J0J69_00060	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J0J69_00085	COG2723	6-phospho-beta-galactosidase activity
J0J69_00090	COG1447	Phosphotransferase system cellobiose-specific component IIA
J0J69_00100	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J0J69_00110	COG2723	6-phospho-beta-galactosidase activity
J0J69_00115	COG1486	melibiose metabolic process
J0J69_00120	COG4086	secreted protein
J0J69_00135	COG2720	vancomycin resistance protein
J0J69_00145	COG3344	reverse transcriptase
J0J69_00150	COG1929	Belongs to the glycerate kinase type-1 family
J0J69_00160	COG4260	virion core protein, lumpy skin disease virus
J0J69_00170	COG1842	Phage shock protein A
J0J69_00185	COG2244	polysaccharide biosynthetic process
J0J69_00200	COG1187	pseudouridine synthase activity
J0J69_00205	COG0613	PHP domain protein
J0J69_00215	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
J0J69_00225	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J0J69_00230	COG1674	ftsk spoiiie
J0J69_00235	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J0J69_00260	COG0489	protein tyrosine kinase activity
J0J69_00265	COG1323	Belongs to the UPF0348 family
J0J69_00270	COG1399	metal-binding, possibly nucleic acid-binding protein
J0J69_00275	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J0J69_00320	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J0J69_00325	COG0513	Belongs to the DEAD box helicase family
J0J69_00330	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
J0J69_00340	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J0J69_00345	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J0J69_00350	COG0768	penicillin binding
J0J69_00355	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J0J69_00365	COG1940	carbohydrate kinase activity
J0J69_00370	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J0J69_00375	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J0J69_00400	COG4537	Required for transformation and DNA binding
J0J69_00405	COG1459	type II secretion system
J0J69_00410	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J0J69_00415	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J0J69_00420	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J0J69_00460	COG0629	single-stranded DNA binding
J0J69_00480	COG5632	N-Acetylmuramoyl-L-alanine amidase
J0J69_00480	COG3409	Peptidoglycan-binding domain 1 protein
J0J69_00480	COG1388	LysM domain
J0J69_00490	COG0658	competence protein
J0J69_00490	COG2333	competence protein COMEC
J0J69_00515	COG0270	DNA (cytosine-5-)-methyltransferase activity
J0J69_00520	COG0270	DNA (cytosine-5-)-methyltransferase activity
J0J69_00525	COG1002	Type II restriction enzyme, methylase subunits
J0J69_00530	COG1061	Type III restriction enzyme res subunit
J0J69_00535	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J0J69_00580	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J0J69_00585	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J0J69_00595	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
J0J69_00615	COG0640	Transcriptional regulator
J0J69_00640	COG0658	competence protein
J0J69_00640	COG2333	competence protein COMEC
J0J69_00645	COG4166	transmembrane transport
J0J69_00650	COG0488	(ABC) transporter
J0J69_00665	COG1199	ATP-dependent helicase activity
J0J69_00665	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J0J69_00675	COG1132	(ABC) transporter
J0J69_00680	COG1132	(ABC) transporter
J0J69_00685	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J0J69_00690	COG2195	Cleaves the N-terminal amino acid of tripeptides
J0J69_00700	COG0564	pseudouridine synthase activity
J0J69_00730	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J0J69_00750	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J0J69_00795	COG0312	modulator of DNA gyrase
J0J69_00810	COG4988	ABC transporter
J0J69_00815	COG1132	(ABC) transporter
J0J69_00825	COG2832	Protein of unknown function (DUF454)
J0J69_00855	COG0243	molybdopterin cofactor binding
J0J69_00875	COG1546	Belongs to the CinA family
J0J69_00875	COG1058	Belongs to the CinA family
J0J69_00880	COG0303	'Molybdopterin
J0J69_00895	COG3842	ATPase activity
J0J69_00900	COG0746	molybdenum cofactor guanylyltransferase activity
J0J69_00920	COG0521	Mo-molybdopterin cofactor biosynthetic process
J0J69_00940	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J0J69_00945	COG3022	response to hydroperoxide
J0J69_00970	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_00970	COG1263	PTS System
J0J69_00970	COG2190	(PTS) system
J0J69_01000	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J0J69_01025	COG3547	Transposase (IS116 IS110 IS902 family)
J0J69_01070	COG2801	Transposase and inactivated derivatives
J0J69_01090	COG1619	proteins homologs of microcin C7 resistance protein MccF
J0J69_01110	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
J0J69_01110	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
J0J69_01115	COG1268	BioY protein
J0J69_01155	COG1609	Transcriptional regulator
J0J69_01160	COG4209	transmembrane transport
J0J69_01165	COG0395	ABC-type sugar transport system, permease component
J0J69_01170	COG1653	transport
J0J69_01205	COG1705	Flagellar rod assembly protein muramidase FlgJ
J0J69_01245	COG1061	Type III restriction enzyme res subunit
J0J69_01250	COG0494	nUDIX hydrolase
J0J69_01265	COG0584	glycerophosphoryl diester phosphodiesterase
J0J69_01285	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J0J69_01295	COG1349	DNA-binding transcription factor activity
J0J69_01300	COG1105	Belongs to the carbohydrate kinase PfkB family
J0J69_01305	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J0J69_01305	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J0J69_01305	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J0J69_01335	COG0038	chloride channel
J0J69_01340	COG0708	Exodeoxyribonuclease III
J0J69_01345	COG5002	protein histidine kinase activity
J0J69_01350	COG0745	RESPONSE REGULATOR receiver
J0J69_01390	COG0640	Transcriptional regulator
J0J69_01395	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J0J69_01400	COG0534	Mate efflux family protein
J0J69_01430	COG0720	synthase
J0J69_01435	COG0602	queuosine metabolic process
J0J69_01440	COG0302	gtp cyclohydrolase
J0J69_01445	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J0J69_01450	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J0J69_01455	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J0J69_01465	COG1621	beta-fructofuranosidase activity
J0J69_01470	COG1803	Methylglyoxal synthase
J0J69_01480	COG0671	phosphoesterase, PA-phosphatase related
J0J69_01495	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J0J69_01515	COG4166	transmembrane transport
J0J69_01520	COG0601	transmembrane transport
J0J69_01525	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J0J69_01530	COG0444	Belongs to the ABC transporter superfamily
J0J69_01560	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
J0J69_01575	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J0J69_01580	COG1570	exodeoxyribonuclease VII activity
J0J69_01590	COG0142	geranyltranstransferase activity
J0J69_01595	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J0J69_01600	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J0J69_01605	COG0497	DNA recombination
J0J69_01610	COG0750	zinc metalloprotease
J0J69_01615	COG0745	RESPONSE REGULATOR receiver
J0J69_01620	COG1649	PFAM Uncharacterised BCR, COG1649
J0J69_01630	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J0J69_01645	COG0735	belongs to the Fur family
J0J69_01650	COG4974	Belongs to the 'phage' integrase family
J0J69_01660	COG1827	regulation of RNA biosynthetic process
J0J69_01700	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0J69_01705	COG0366	Alpha amylase catalytic
J0J69_01710	COG2190	(PTS) system
J0J69_01710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_01710	COG1263	PTS System
J0J69_01745	COG4372	Transposase
J0J69_01765	COG0366	Alpha amylase catalytic
J0J69_01795	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J0J69_01800	COG3326	Membrane
J0J69_01825	COG0534	Mate efflux family protein
J0J69_01835	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J0J69_01850	COG0737	Belongs to the 5'-nucleotidase family
J0J69_01875	COG1757	Na H antiporter
J0J69_01910	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
J0J69_01930	COG1115	amino acid carrier protein
J0J69_01940	COG1307	EDD domain protein, DegV family
J0J69_01945	COG1671	Belongs to the UPF0178 family
J0J69_01950	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J0J69_01955	COG4129	membrane
J0J69_01970	COG1550	Protein conserved in bacteria
J0J69_01975	COG0628	permease
J0J69_01985	COG0534	Mate efflux family protein
J0J69_01990	COG1522	sequence-specific DNA binding
J0J69_01995	COG0436	Aminotransferase
J0J69_02005	COG0596	Alpha beta hydrolase
J0J69_02010	COG1523	belongs to the glycosyl hydrolase 13 family
J0J69_02015	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J0J69_02025	COG4377	Putative membrane peptidase family (DUF2324)
J0J69_02030	COG0640	Transcriptional regulator
J0J69_02040	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J0J69_02075	COG0180	Tryptophanyl-tRNA synthetase
J0J69_02090	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J0J69_02100	COG0473	3-isopropylmalate dehydrogenase activity
J0J69_02155	COG0629	single-stranded DNA binding
J0J69_02175	COG0789	Transcriptional regulator
J0J69_02180	COG0656	L-ascorbic acid biosynthetic process
J0J69_02220	COG3328	transposase activity
J0J69_02230	COG4319	ketosteroid isomerase
J0J69_02235	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J0J69_02250	COG3328	transposase activity
J0J69_02290	COG1061	Type III restriction enzyme res subunit
J0J69_02320	COG0534	Mate efflux family protein
J0J69_02345	COG1331	Highly conserved protein containing a thioredoxin domain
J0J69_02360	COG1028	Short-chain dehydrogenase reductase Sdr
J0J69_02365	COG0367	asparagine synthase
J0J69_02370	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
J0J69_02380	COG0252	asparaginase activity
J0J69_02390	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
J0J69_02395	COG4120	Belongs to the binding-protein-dependent transport system permease family
J0J69_02420	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J0J69_02420	COG0723	plastoquinol--plastocyanin reductase activity
J0J69_02465	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J0J69_02470	COG0010	Belongs to the arginase family
J0J69_02475	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J0J69_02480	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
J0J69_02485	COG1982	Orn Lys Arg decarboxylase major
J0J69_02490	COG3706	GGDEF domain
J0J69_02510	COG4974	Belongs to the 'phage' integrase family
J0J69_02520	COG1523	belongs to the glycosyl hydrolase 13 family
J0J69_02530	COG2826	transposase and inactivated derivatives, IS30 family
J0J69_02540	COG0534	Mate efflux family protein
J0J69_02545	COG1028	Short-chain dehydrogenase reductase Sdr
J0J69_02555	COG0800	Aldolase
J0J69_02580	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J0J69_02590	COG4720	Psort location CytoplasmicMembrane, score
J0J69_02595	COG2081	HI0933 family
J0J69_02620	COG1177	transmembrane transport
J0J69_02625	COG1176	ABC-type spermidine putrescine transport system, permease component I
J0J69_02630	COG3842	ATPase activity
J0J69_02640	COG1217	gtp-binding protein TYPA
J0J69_02645	COG1466	dna polymerase III delta subunit
J0J69_02650	COG2333	competence protein COMEC
J0J69_02650	COG0658	competence protein
J0J69_02655	COG1555	photosystem II stabilization
J0J69_02655	COG1596	polysaccharide export
J0J69_02665	COG2226	methyltransferase
J0J69_02670	COG0799	negative regulation of ribosome biogenesis
J0J69_02675	COG1713	HD superfamily hydrolase involved in NAD metabolism
J0J69_02680	COG1534	Rna-binding protein
J0J69_02685	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J0J69_02690	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
J0J69_02700	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J0J69_02700	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J0J69_02705	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J0J69_02710	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J0J69_02715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J0J69_02720	COG0572	uridine kinase
J0J69_02725	COG0826	peptidase U32
J0J69_02730	COG0826	peptidase U32
J0J69_02735	COG4122	O-methyltransferase activity
J0J69_02740	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J0J69_02745	COG3906	Belongs to the UPF0473 family
J0J69_02760	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J0J69_02770	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J0J69_02775	COG0482	sulfurtransferase activity
J0J69_02780	COG1079	Belongs to the binding-protein-dependent transport system permease family
J0J69_02785	COG4603	Belongs to the binding-protein-dependent transport system permease family
J0J69_02790	COG3845	ABC transporter
J0J69_02795	COG1744	ABC transporter substrate-binding protein PnrA-like
J0J69_02800	COG1744	ABC transporter substrate-binding protein PnrA-like
J0J69_02805	COG1744	ABC transporter substrate-binding protein PnrA-like
J0J69_02810	COG1280	lysine exporter protein (LysE YggA)
J0J69_02810	COG1674	ftsk spoiiie
J0J69_02815	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J0J69_02820	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J0J69_02825	COG0527	aspartate kinase activity
J0J69_02830	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J0J69_02835	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J0J69_02840	COG0726	polysaccharide deacetylase
J0J69_02850	COG3344	reverse transcriptase
J0J69_02855	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J0J69_02860	COG0196	riboflavin kinase activity
J0J69_02870	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J0J69_02880	COG0481	GTPase activity
J0J69_02895	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
J0J69_02905	COG2195	Cleaves the N-terminal amino acid of tripeptides
J0J69_02910	COG1983	PspC domain protein
J0J69_02920	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J0J69_02925	COG0268	Binds directly to 16S ribosomal RNA
J0J69_02960	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J0J69_02965	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J0J69_02970	COG1610	YqeY-like protein
J0J69_02985	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J0J69_02990	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J0J69_02995	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J0J69_03000	COG2264	protein methyltransferase activity
J0J69_03005	COG0484	heat shock protein binding
J0J69_03010	COG0443	Heat shock 70 kDa protein
J0J69_03015	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J0J69_03020	COG1420	regulation of RNA biosynthetic process
J0J69_03030	COG1126	abc transporter atp-binding protein
J0J69_03035	COG0765	amino acid transport
J0J69_03045	COG1193	negative regulation of DNA recombination
J0J69_03055	COG0457	Tetratricopeptide repeat
J0J69_03055	COG0705	Rhomboid family
J0J69_03060	COG0564	pseudouridine synthase activity
J0J69_03065	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J0J69_03100	COG0762	integral membrane protein
J0J69_03105	COG1799	cell septum assembly
J0J69_03110	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J0J69_03115	COG1873	PFAM PRC-barrel domain
J0J69_03120	COG1191	sigma factor activity
J0J69_03125	COG1191	sigma factor activity
J0J69_03135	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J0J69_03155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J0J69_03160	COG0772	Belongs to the SEDS family
J0J69_03165	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J0J69_03170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J0J69_03175	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J0J69_03180	COG0768	penicillin binding
J0J69_03185	COG0768	penicillin binding
J0J69_03195	COG0275	rRNA processing
J0J69_03200	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J0J69_03210	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J0J69_03215	COG0544	peptidyl-prolyl cis-trans isomerase activity
J0J69_03255	COG1247	-acetyltransferase
J0J69_03280	COG0210	DNA helicase
J0J69_03290	COG3328	transposase activity
J0J69_03305	COG0673	inositol 2-dehydrogenase activity
J0J69_03310	COG1114	Component of the transport system for branched-chain amino acids
J0J69_03325	COG0475	glutathione-regulated potassium exporter activity
J0J69_03345	COG1227	inorganic diphosphatase activity
J0J69_03350	COG1164	Oligoendopeptidase f
J0J69_03355	COG2271	Major facilitator Superfamily
J0J69_03360	COG2267	carboxylic ester hydrolase activity
J0J69_03370	COG2176	DNA-directed DNA polymerase activity
J0J69_03375	COG0442	prolyl-tRNA aminoacylation
J0J69_03380	COG0750	zinc metalloprotease
J0J69_03390	COG4589	Belongs to the CDS family
J0J69_03395	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J0J69_03420	COG0233	cytoplasmic translational termination
J0J69_03425	COG0528	UMP kinase activity
J0J69_03430	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J0J69_03435	COG0052	Belongs to the universal ribosomal protein uS2 family
J0J69_03445	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J0J69_03450	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J0J69_03465	COG4974	Belongs to the 'phage' integrase family
J0J69_03470	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
J0J69_03475	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J0J69_03480	COG0758	DNA mediated transformation
J0J69_03485	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J0J69_03505	COG0335	large ribosomal subunit rRNA binding
J0J69_03515	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J0J69_03545	COG0742	ribosomal rna small subunit methyltransferase
J0J69_03560	COG1785	Belongs to the alkaline phosphatase family
J0J69_03565	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J0J69_03570	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
J0J69_03575	COG0552	protein localization to endoplasmic reticulum
J0J69_03580	COG1196	nuclear chromosome segregation
J0J69_03585	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J0J69_03605	COG1012	belongs to the aldehyde dehydrogenase family
J0J69_03620	COG0577	efflux transmembrane transporter activity
J0J69_03630	COG1136	(ABC) transporter
J0J69_03635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J0J69_03675	COG1115	amino acid carrier protein
J0J69_03705	COG1285	pathogenesis
J0J69_03725	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J0J69_03730	COG0732	type I restriction modification DNA specificity domain
J0J69_03735	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
J0J69_03775	COG1396	sequence-specific DNA binding
J0J69_03780	COG1131	(ABC) transporter
J0J69_03790	COG3620	sequence-specific DNA binding
J0J69_03940	COG1263	PTS System
J0J69_03940	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_03940	COG2190	(PTS) system
J0J69_04035	COG1595	DNA-templated transcription, initiation
J0J69_04055	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
J0J69_04070	COG0419	ATPase involved in DNA repair
J0J69_04075	COG0420	3'-5' exonuclease activity
J0J69_04080	COG1609	Transcriptional regulator
J0J69_04095	COG0406	alpha-ribazole phosphatase activity
J0J69_04115	COG4221	oxidoreductase activity
J0J69_04130	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J0J69_04135	COG1461	Dihydroxyacetone kinase
J0J69_04140	COG1302	Protein conserved in bacteria
J0J69_04145	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J0J69_04175	COG1564	THIamine pyrophosphokinase
J0J69_04180	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J0J69_04185	COG1162	GTPase activity
J0J69_04190	COG0515	serine threonine protein kinase
J0J69_04190	COG2815	serine threonine protein kinase
J0J69_04195	COG0631	protein serine/threonine phosphatase activity
J0J69_04205	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J0J69_04205	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J0J69_04210	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J0J69_04220	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J0J69_04225	COG2996	Protein conserved in bacteria
J0J69_04240	COG0426	domain, Protein
J0J69_04245	COG0346	lactoylglutathione lyase activity
J0J69_04250	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J0J69_04260	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J0J69_04265	COG1758	RNA polymerase activity
J0J69_04270	COG0194	GDP metabolic process
J0J69_04275	COG1293	RNA-binding protein homologous to eukaryotic snRNP
J0J69_04285	COG2720	vancomycin resistance protein
J0J69_04295	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J0J69_04310	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
J0J69_04315	COG1876	peptidase activity
J0J69_04335	COG0772	Belongs to the SEDS family
J0J69_04340	COG1074	ATP-dependent DNA helicase activity
J0J69_04355	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
J0J69_04370	COG1160	GTP binding
J0J69_04375	COG2183	response to ionizing radiation
J0J69_04375	COG0539	negative regulation of cytoplasmic translation
J0J69_04390	COG1141	Ferredoxin
J0J69_04395	COG1187	pseudouridine synthase activity
J0J69_04400	COG0700	Nucleoside recognition
J0J69_04405	COG2715	membrane protein required for spore maturation
J0J69_04410	COG1686	Belongs to the peptidase S11 family
J0J69_04420	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J0J69_04430	COG0697	spore germination
J0J69_04440	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J0J69_04455	COG2172	sigma factor antagonist activity
J0J69_04465	COG1686	Belongs to the peptidase S11 family
J0J69_04505	COG2136	Putative SAM-dependent methyltransferase
J0J69_04505	COG2521	methyltransferase
J0J69_04510	COG0629	single-stranded DNA binding
J0J69_04515	COG0612	Peptidase, M16
J0J69_04520	COG0612	Peptidase, M16
J0J69_04530	COG0813	purine-nucleoside phosphorylase activity
J0J69_04535	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J0J69_04540	COG0628	permease
J0J69_04555	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J0J69_04605	COG1216	Glycosyl transferase, family 2
J0J69_04610	COG0438	transferase activity, transferring glycosyl groups
J0J69_04615	COG1216	Glycosyl transferase, family 2
J0J69_04615	COG1442	glycosyl transferase family 8
J0J69_04640	COG1316	TRANSCRIPTIONal
J0J69_04650	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J0J69_04655	COG0124	histidyl-tRNA synthetase
J0J69_04665	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J0J69_04670	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J0J69_04675	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
J0J69_04675	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J0J69_04680	COG2244	polysaccharide biosynthetic process
J0J69_04685	COG2323	membrane
J0J69_04695	COG1862	Preprotein translocase
J0J69_04700	COG0343	queuine tRNA-ribosyltransferase activity
J0J69_04705	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J0J69_04710	COG2255	four-way junction helicase activity
J0J69_04720	COG0632	four-way junction helicase activity
J0J69_04725	COG2116	formate transmembrane transporter activity
J0J69_04740	COG0628	permease
J0J69_04780	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0J69_04785	COG1621	beta-fructofuranosidase activity
J0J69_04790	COG1263	PTS System
J0J69_04790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_04795	COG1609	Transcriptional regulator
J0J69_04805	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J0J69_04810	COG0826	peptidase U32
J0J69_04815	COG0653	protein targeting
J0J69_04845	COG4989	oxidoreductase activity
J0J69_04875	COG0733	neurotransmitter:sodium symporter activity
J0J69_04880	COG3621	Patatin-like phospholipase
J0J69_04920	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
J0J69_04930	COG0446	pyridine nucleotide-disulphide oxidoreductase
J0J69_05210	COG0671	phosphoesterase, PA-phosphatase related
J0J69_05230	COG0116	Belongs to the methyltransferase superfamily
J0J69_05255	COG4677	pectinesterase activity
J0J69_05270	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J0J69_05280	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J0J69_05285	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J0J69_05295	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J0J69_05305	COG1994	Peptidase M50
J0J69_05335	COG0367	asparagine synthase
J0J69_05345	COG2003	Belongs to the UPF0758 family
J0J69_05355	COG0285	dihydrofolate synthase activity
J0J69_05380	COG1363	Peptidase, m42
J0J69_05385	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J0J69_05390	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J0J69_05395	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J0J69_05405	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J0J69_05410	COG1484	DNA-dependent DNA replication
J0J69_05415	COG3611	Membrane attachment protein
J0J69_05425	COG0237	dephospho-CoA kinase activity
J0J69_05430	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J0J69_05445	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J0J69_05445	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J0J69_05450	COG1408	metallophosphoesterase
J0J69_05465	COG2084	Dehydrogenase
J0J69_05485	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J0J69_05495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_05495	COG2190	(PTS) system
J0J69_05495	COG1263	PTS System
J0J69_05500	COG2190	(PTS) system
J0J69_05500	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_05500	COG1263	PTS System
J0J69_05505	COG0142	geranyltranstransferase activity
J0J69_05510	COG1252	NADH dehydrogenase
J0J69_05530	COG1051	belongs to the nudix hydrolase family
J0J69_05540	COG0205	6-phosphofructokinase activity
J0J69_05545	COG0587	DNA-directed DNA polymerase activity
J0J69_05550	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J0J69_05555	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J0J69_05560	COG0827	DNA restriction-modification system
J0J69_05565	COG3874	Sporulation protein YtfJ
J0J69_05575	COG0367	asparagine synthase
J0J69_05580	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J0J69_05585	COG2860	membrane
J0J69_05590	COG0488	(ABC) transporter
J0J69_05595	COG1362	aminopeptidase activity
J0J69_05670	COG1388	LysM domain
J0J69_05670	COG0860	N-Acetylmuramoyl-L-alanine amidase
J0J69_05675	COG1045	serine acetyltransferase
J0J69_05695	COG1098	S1 RNA binding domain
J0J69_05700	COG0492	ferredoxin-NADP+ reductase activity
J0J69_05705	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
J0J69_05710	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J0J69_05720	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
J0J69_05730	COG0561	phosphatase activity
J0J69_05735	COG0647	UMP catabolic process
J0J69_05740	COG4470	Protein conserved in bacteria
J0J69_05755	COG0534	Mate efflux family protein
J0J69_05760	COG1609	Transcriptional regulator
J0J69_05765	COG3344	reverse transcriptase
J0J69_05770	COG3842	ATPase activity
J0J69_05775	COG2508	Transcriptional regulator
J0J69_05785	COG0564	pseudouridine synthase activity
J0J69_05790	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J0J69_05795	COG2357	RelA SpoT domain protein
J0J69_05815	COG1393	Belongs to the ArsC family
J0J69_05830	COG4608	Belongs to the ABC transporter superfamily
J0J69_05835	COG0444	Belongs to the ABC transporter superfamily
J0J69_05840	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J0J69_05845	COG0601	transmembrane transport
J0J69_05850	COG4166	transmembrane transport
J0J69_05860	COG1132	(ABC) transporter
J0J69_05865	COG1132	(ABC) transporter
J0J69_05880	COG0542	response to heat
J0J69_05885	COG0561	phosphatase activity
J0J69_05905	COG0495	leucyl-tRNA aminoacylation
J0J69_05910	COG1242	4 iron, 4 sulfur cluster binding
J0J69_05915	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
J0J69_05935	COG0589	response to stress
J0J69_05940	COG0149	triose-phosphate isomerase activity
J0J69_05945	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J0J69_05950	COG4191	Histidine kinase
J0J69_05950	COG0784	Response regulator, receiver
J0J69_05960	COG0534	Mate efflux family protein
J0J69_05990	COG2814	Major facilitator Superfamily
J0J69_05995	COG1120	ATPase activity
J0J69_06000	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J0J69_06005	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J0J69_06010	COG4592	Periplasmic binding protein
J0J69_06030	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J0J69_06035	COG1757	Na H antiporter
J0J69_06055	COG0531	amino acid
J0J69_06065	COG0697	spore germination
J0J69_06070	COG0038	chloride channel
J0J69_06075	COG3344	reverse transcriptase
J0J69_06085	COG3328	transposase activity
J0J69_06115	COG4372	Transposase
J0J69_06140	COG4372	Transposase
J0J69_06150	COG0463	Glycosyl transferase, family 2
J0J69_06190	COG2199	diguanylate cyclase activity
J0J69_06195	COG4943	cyclic-guanylate-specific phosphodiesterase activity
J0J69_06200	COG4943	cyclic-guanylate-specific phosphodiesterase activity
J0J69_06220	COG4372	Transposase
J0J69_06280	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J0J69_06330	COG0438	transferase activity, transferring glycosyl groups
J0J69_06340	COG0438	transferase activity, transferring glycosyl groups
J0J69_06370	COG0438	transferase activity, transferring glycosyl groups
J0J69_06375	COG0438	transferase activity, transferring glycosyl groups
J0J69_06380	COG0489	protein tyrosine kinase activity
J0J69_06390	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J0J69_06400	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J0J69_06410	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J0J69_06415	COG1316	TRANSCRIPTIONal
J0J69_06440	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
J0J69_06445	COG1216	Glycosyl transferase, family 2
J0J69_06445	COG1442	glycosyl transferase family 8
J0J69_06455	COG1442	glycosyl transferase family 8
J0J69_06455	COG1216	Glycosyl transferase, family 2
J0J69_06460	COG0110	maltose O-acetyltransferase activity
J0J69_06480	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J0J69_06485	COG0489	protein tyrosine kinase activity
J0J69_06500	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J0J69_06515	COG1216	Glycosyl transferase, family 2
J0J69_06520	COG1216	Glycosyl transferase, family 2
J0J69_06550	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
J0J69_06555	COG0438	transferase activity, transferring glycosyl groups
J0J69_06555	COG1216	Glycosyl transferase, family 2
J0J69_06565	COG1134	teichoic acid transport
J0J69_06570	COG1682	transport, permease protein
J0J69_06595	COG4193	domain, Protein
J0J69_06595	COG5263	repeat protein
J0J69_06615	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J0J69_06620	COG0586	Pfam SNARE associated Golgi protein
J0J69_06640	COG1028	Short-chain dehydrogenase reductase Sdr
J0J69_06645	COG1388	LysM domain
J0J69_06645	COG3942	CHAP domain
J0J69_06680	COG0602	queuosine metabolic process
J0J69_06685	COG1328	CTP reductase activity
J0J69_06710	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J0J69_06715	COG1121	(ABC) transporter
J0J69_06720	COG0803	Belongs to the bacterial solute-binding protein 9 family
J0J69_06740	COG1737	Transcriptional regulator
J0J69_06745	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J0J69_06765	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J0J69_06770	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J0J69_06800	COG3344	reverse transcriptase
J0J69_06810	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J0J69_06815	COG1012	belongs to the aldehyde dehydrogenase family
J0J69_06850	COG1874	Beta-galactosidase
J0J69_06855	COG3328	transposase activity
J0J69_06870	COG1388	LysM domain
J0J69_06870	COG5632	N-Acetylmuramoyl-L-alanine amidase
J0J69_06870	COG3409	Peptidoglycan-binding domain 1 protein
J0J69_06875	COG1253	flavin adenine dinucleotide binding
J0J69_06890	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J0J69_06910	COG0402	S-adenosylhomocysteine deaminase activity
J0J69_06915	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
J0J69_06925	COG3842	ATPase activity
J0J69_06935	COG1176	ABC-type spermidine putrescine transport system, permease component I
J0J69_06940	COG2985	domain, Protein
J0J69_06945	COG0584	glycerophosphoryl diester phosphodiesterase
J0J69_06950	COG1959	2 iron, 2 sulfur cluster binding
J0J69_06990	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J0J69_07005	COG1307	EDD domain protein, DegV family
J0J69_07015	COG2203	Gaf domain
J0J69_07015	COG2199	diguanylate cyclase activity
J0J69_07020	COG2199	diguanylate cyclase activity
J0J69_07045	COG1126	abc transporter atp-binding protein
J0J69_07050	COG4215	(ABC) transporter
J0J69_07055	COG0765	amino acid transport
J0J69_07070	COG0500	methyltransferase
J0J69_07090	COG1760	l-serine dehydratase
J0J69_07095	COG0556	nucleotide-excision repair
J0J69_07100	COG0793	Belongs to the peptidase S41A family
J0J69_07100	COG3409	Peptidoglycan-binding domain 1 protein
J0J69_07110	COG2177	Part of the ABC transporter FtsEX involved in
J0J69_07115	COG2884	Cell division ATP-binding protein ftsE
J0J69_07120	COG1854	S-ribosylhomocysteine lyase activity
J0J69_07125	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
J0J69_07150	COG1105	Belongs to the carbohydrate kinase PfkB family
J0J69_07175	COG1739	Uncharacterized protein family UPF0029
J0J69_07180	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J0J69_07185	COG1077	Cell shape determining protein MreB Mrl
J0J69_07195	COG2385	sporulation resulting in formation of a cellular spore
J0J69_07205	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J0J69_07210	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J0J69_07220	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J0J69_07230	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J0J69_07235	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J0J69_07255	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J0J69_07260	COG0698	ribose 5-phosphate isomerase
J0J69_07275	COG0009	L-threonylcarbamoyladenylate synthase
J0J69_07280	COG2890	protein-(glutamine-N5) methyltransferase activity
J0J69_07285	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J0J69_07290	COG0305	Participates in initiation and elongation during chromosome replication
J0J69_07295	COG0359	binds to the 23S rRNA
J0J69_07300	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
J0J69_07315	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J0J69_07320	COG0629	single-stranded DNA binding
J0J69_07325	COG0360	Binds together with S18 to 16S ribosomal RNA
J0J69_07330	COG0012	GTP binding
J0J69_07340	COG1215	transferase activity, transferring glycosyl groups
J0J69_07350	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J0J69_07355	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J0J69_07360	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J0J69_07365	COG0084	hydrolase, TatD family'
J0J69_07370	COG4608	Belongs to the ABC transporter superfamily
J0J69_07375	COG0444	Belongs to the ABC transporter superfamily
J0J69_07380	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J0J69_07385	COG0601	transmembrane transport
J0J69_07390	COG4166	transmembrane transport
J0J69_07445	COG3547	Transposase (IS116 IS110 IS902 family)
J0J69_07450	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J0J69_07455	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J0J69_07470	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
J0J69_07475	COG1774	PSP1 C-terminal conserved region
J0J69_07480	COG0470	DNA polymerase III
J0J69_07485	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J0J69_07500	COG0101	tRNA pseudouridine synthase activity
J0J69_07505	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J0J69_07510	COG1122	ATPase activity
J0J69_07515	COG1122	ATPase activity
J0J69_07525	COG1132	(ABC) transporter
J0J69_07690	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J0J69_07700	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J0J69_07705	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J0J69_07710	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J0J69_07725	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J0J69_07730	COG0581	inorganic phosphate transmembrane transporter activity
J0J69_07735	COG0573	inorganic phosphate transmembrane transporter activity
J0J69_07745	COG5002	protein histidine kinase activity
J0J69_07750	COG0745	RESPONSE REGULATOR receiver
J0J69_07760	COG0590	tRNA wobble adenosine to inosine editing
J0J69_07795	COG1435	thymidine kinase activity
J0J69_07800	COG1619	proteins homologs of microcin C7 resistance protein MccF
J0J69_07805	COG1473	amidohydrolase
J0J69_07810	COG5001	Diguanylate cyclase
J0J69_07810	COG3300	MHYT domain
J0J69_07815	COG0789	Transcriptional regulator
J0J69_07835	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J0J69_07840	COG0163	prenyltransferase activity
J0J69_07845	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J0J69_07850	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J0J69_07865	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J0J69_07880	COG0281	malic enzyme
J0J69_07890	COG0622	Phosphoesterase
J0J69_07895	COG0174	glutamine synthetase
J0J69_07910	COG0284	orotidine-5'-phosphate decarboxylase activity
J0J69_07935	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J0J69_07940	COG0540	Belongs to the ATCase OTCase family
J0J69_07950	COG1418	mRNA catabolic process
J0J69_07970	COG0706	membrane insertase activity
J0J69_07975	COG0706	membrane insertase activity
J0J69_07985	COG0426	domain, Protein
J0J69_08005	COG1454	alcohol dehydrogenase
J0J69_08005	COG1012	belongs to the aldehyde dehydrogenase family
J0J69_08015	COG2252	PERMEase
J0J69_08030	COG1363	Peptidase, m42
J0J69_08035	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J0J69_08060	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J0J69_08065	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J0J69_08070	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J0J69_08090	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J0J69_08125	COG4464	protein tyrosine phosphatase activity
J0J69_08150	COG4607	ABC-type enterochelin transport system periplasmic component
J0J69_08155	COG4604	ABC transporter, ATP-binding protein
J0J69_08160	COG4605	iron ion homeostasis
J0J69_08165	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J0J69_08170	COG1917	Cupin 2, conserved barrel domain protein
J0J69_08170	COG4977	sequence-specific DNA binding
J0J69_08190	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J0J69_08195	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J0J69_08200	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
J0J69_08215	COG0534	Mate efflux family protein
J0J69_08220	COG1098	S1 RNA binding domain
J0J69_08250	COG1575	Belongs to the MenA family. Type 1 subfamily
J0J69_08255	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J0J69_08260	COG3956	TIGRFAM MazG family protein
J0J69_08265	COG2244	polysaccharide biosynthetic process
J0J69_08270	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J0J69_08300	COG1846	Transcriptional regulator
J0J69_08305	COG3314	Sporulation integral membrane protein YlbJ
J0J69_08335	COG5002	protein histidine kinase activity
J0J69_08335	COG3850	Histidine kinase
J0J69_08425	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J0J69_08430	COG0151	Belongs to the GarS family
J0J69_08440	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J0J69_08445	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J0J69_08450	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J0J69_08455	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J0J69_08465	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J0J69_08470	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J0J69_08480	COG0517	IMP dehydrogenase activity
J0J69_08480	COG0516	GMP reductase activity
J0J69_08485	COG2002	toxin-antitoxin pair type II binding
J0J69_08490	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J0J69_08495	COG0193	aminoacyl-tRNA hydrolase activity
J0J69_08500	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J0J69_08505	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J0J69_08510	COG2088	sporulation resulting in formation of a cellular spore
J0J69_08515	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J0J69_08520	COG4466	Protein conserved in bacteria
J0J69_08530	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J0J69_08535	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
J0J69_08540	COG1078	dGTPase activity
J0J69_08550	COG4844	belongs to the
J0J69_08555	COG0280	phosphate acetyltransferase
J0J69_08560	COG3773	Cell wall hydrolase
J0J69_08570	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J0J69_08585	COG0537	adenosine 5'-monophosphoramidase activity
J0J69_08595	COG0142	geranyltranstransferase activity
J0J69_08600	COG0561	phosphatase activity
J0J69_08605	COG1592	Rubrerythrin
J0J69_08610	COG1592	Rubrerythrin
J0J69_08615	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J0J69_08620	COG1882	Formate acetyltransferase
J0J69_08630	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J0J69_08635	COG2011	ABC-type metal ion transport system permease component
J0J69_08640	COG1464	Belongs to the NlpA lipoprotein family
J0J69_08650	COG1115	amino acid carrier protein
J0J69_08690	COG3546	catalase activity
J0J69_08705	COG3546	catalase activity
J0J69_08710	COG0659	secondary active sulfate transmembrane transporter activity
J0J69_08715	COG0513	Belongs to the DEAD box helicase family
J0J69_08720	COG0488	(ABC) transporter
J0J69_08740	COG1266	CAAX protease self-immunity
J0J69_08750	COG0393	Putative heavy-metal-binding
J0J69_08760	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
J0J69_08765	COG0217	transcriptional regulatory protein
J0J69_08780	COG1131	(ABC) transporter
J0J69_08795	COG1979	alcohol dehydrogenase
J0J69_08805	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J0J69_08815	COG1408	metallophosphoesterase
J0J69_08825	COG1397	ADP-ribosylglycohydrolase
J0J69_08830	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0J69_08840	COG1876	peptidase activity
J0J69_08850	COG2247	cell wall binding repeat
J0J69_08850	COG0860	N-Acetylmuramoyl-L-alanine amidase
J0J69_08860	COG0860	N-Acetylmuramoyl-L-alanine amidase
J0J69_08860	COG2247	cell wall binding repeat
J0J69_08865	COG1741	Belongs to the pirin family
J0J69_08875	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J0J69_08880	COG2610	gluconate transmembrane transporter activity
J0J69_08885	COG3620	sequence-specific DNA binding
J0J69_08920	COG1408	metallophosphoesterase
J0J69_08925	COG1114	Component of the transport system for branched-chain amino acids
J0J69_08935	COG0789	Transcriptional regulator
J0J69_08935	COG4978	Transcriptional regulator
J0J69_08975	COG0588	phosphoglycerate mutase activity
J0J69_08980	COG3842	ATPase activity
J0J69_08985	COG0584	glycerophosphoryl diester phosphodiesterase
J0J69_09000	COG0395	ABC-type sugar transport system, permease component
J0J69_09010	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J0J69_09015	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J0J69_09025	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
J0J69_09025	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J0J69_09030	COG2824	Alkylphosphonate utilization operon protein PhnA
J0J69_09055	COG1357	PFAM Pentapeptide repeats (8 copies)
J0J69_09060	COG0786	glutamate:sodium symporter activity
J0J69_09085	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
J0J69_09090	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J0J69_09095	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J0J69_09100	COG0187	DNA topoisomerase II activity
J0J69_09105	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J0J69_09110	COG2501	S4 domain
J0J69_09115	COG4481	Protein conserved in bacteria
J0J69_09120	COG0668	transmembrane transport
J0J69_09125	COG1475	DNA binding
J0J69_09130	COG1192	Involved in chromosome partitioning
J0J69_09150	COG0445	tRNA wobble uridine modification
J0J69_09155	COG4152	abc transporter atp-binding protein
J0J69_09160	COG1668	transmembrane transport
J0J69_09165	COG0592	DNA-directed DNA polymerase activity
J0J69_09170	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J0J69_09190	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J0J69_09200	COG0017	Asparaginyl-tRNA synthetase
J0J69_09210	COG1523	belongs to the glycosyl hydrolase 13 family
J0J69_09220	COG0018	arginyl-trna synthetase
J0J69_09265	COG0504	CTP synthase activity
J0J69_09280	COG3706	GGDEF domain
J0J69_09285	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
J0J69_09305	COG0745	RESPONSE REGULATOR receiver
J0J69_09310	COG2770	Histidine kinase
J0J69_09310	COG2205	protein histidine kinase activity
J0J69_09315	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J0J69_09320	COG1592	Rubrerythrin
J0J69_09330	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J0J69_09340	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J0J69_09355	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J0J69_09365	COG0366	Alpha amylase catalytic
J0J69_09370	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
J0J69_09385	COG5001	Diguanylate cyclase
J0J69_09385	COG4251	negative regulation of phosphorylation
J0J69_09385	COG2203	Gaf domain
J0J69_09385	COG3706	GGDEF domain
J0J69_09395	COG1595	DNA-templated transcription, initiation
J0J69_09405	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J0J69_09410	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J0J69_09425	COG0475	glutathione-regulated potassium exporter activity
J0J69_09435	COG1494	fructose-1,6-bisphosphatase
J0J69_09470	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J0J69_09490	COG0251	oxidation-reduction process
J0J69_09495	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J0J69_09500	COG0215	cysteine-tRNA ligase activity
J0J69_09505	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
J0J69_09510	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J0J69_09520	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J0J69_09525	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J0J69_09535	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J0J69_09540	COG0081	regulation of translation
J0J69_09545	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J0J69_09550	COG0222	ribosome binding
J0J69_09555	COG2813	Specifically methylates the guanine in position
J0J69_09560	COG0085	RNA polymerase activity
J0J69_09565	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J0J69_09570	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J0J69_09575	COG0049	tRNA binding
J0J69_09580	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J0J69_09585	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J0J69_09590	COG0051	transcription antitermination factor activity, RNA binding
J0J69_09600	COG0088	Forms part of the polypeptide exit tunnel
J0J69_09605	COG0089	rRNA binding
J0J69_09610	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J0J69_09615	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J0J69_09620	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J0J69_09625	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J0J69_09630	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J0J69_09660	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J0J69_09665	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J0J69_09675	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J0J69_09680	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J0J69_09695	COG0201	protein transport
J0J69_09700	COG0563	adenylate kinase activity
J0J69_09705	COG0024	Methionine aminopeptidase
J0J69_09715	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J0J69_09725	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J0J69_09730	COG0202	RNA polymerase activity
J0J69_09740	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
J0J69_09750	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0J69_09755	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J0J69_09760	COG1846	Transcriptional regulator
J0J69_09765	COG0534	Mate efflux family protein
J0J69_09770	COG2608	mercury ion transmembrane transporter activity
J0J69_09775	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J0J69_09800	COG2267	carboxylic ester hydrolase activity
J0J69_09805	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J0J69_09815	COG1181	Belongs to the D-alanine--D-alanine ligase family
J0J69_09825	COG0740	serine-type endopeptidase activity
J0J69_09835	COG1546	Belongs to the CinA family
J0J69_09835	COG1058	Belongs to the CinA family
J0J69_09845	COG0149	triose-phosphate isomerase activity
J0J69_09860	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J0J69_09865	COG2188	Transcriptional regulator
J0J69_09870	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J0J69_09890	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
J0J69_09905	COG3859	Proton-coupled thiamine transporter YuaJ
J0J69_09920	COG0561	phosphatase activity
J0J69_09925	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J0J69_09930	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
J0J69_09935	COG2183	response to ionizing radiation
J0J69_09950	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J0J69_09955	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J0J69_09960	COG1846	Transcriptional regulator
J0J69_09965	COG1686	Belongs to the peptidase S11 family
J0J69_09975	COG4106	trans-aconitate 2-methyltransferase activity
J0J69_09985	COG1752	Esterase of the alpha-beta hydrolase superfamily
J0J69_09990	COG1525	nuclease
J0J69_10015	COG0778	Nitroreductase
J0J69_10030	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J0J69_10040	COG4894	glucomannan catabolic process
J0J69_10045	COG0667	Aldo Keto reductase
J0J69_10060	COG1472	Belongs to the glycosyl hydrolase 3 family
J0J69_10065	COG1263	PTS System
J0J69_10065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_10070	COG0366	Alpha amylase catalytic
J0J69_10075	COG2188	Transcriptional regulator
J0J69_10090	COG4604	ABC transporter, ATP-binding protein
J0J69_10100	COG1881	PFAM PEBP family protein
J0J69_10105	COG1428	Deoxynucleoside kinase
J0J69_10110	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J0J69_10120	COG1396	sequence-specific DNA binding
J0J69_10130	COG2207	Transcriptional regulator
J0J69_10140	COG0351	phosphomethylpyrimidine kinase
J0J69_10145	COG0351	phosphomethylpyrimidine kinase
J0J69_10155	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J0J69_10160	COG1328	CTP reductase activity
J0J69_10165	COG1114	Component of the transport system for branched-chain amino acids
J0J69_10190	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J0J69_10205	COG1288	antiporter activity
J0J69_10215	COG0628	permease
J0J69_10220	COG0110	maltose O-acetyltransferase activity
J0J69_10250	COG0110	maltose O-acetyltransferase activity
J0J69_10265	COG2070	2-Nitropropane dioxygenase
J0J69_10275	COG0439	Biotin carboxylase
J0J69_10280	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J0J69_10285	COG0825	malonyl-CoA metabolic process
J0J69_10300	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J0J69_10310	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J0J69_10315	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J0J69_10320	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
J0J69_10325	COG0739	heme binding
J0J69_10405	COG0802	atpase or kinase
J0J69_10410	COG1214	PFAM Peptidase M22, glycoprotease
J0J69_10430	COG0488	(ABC) transporter
J0J69_10435	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
J0J69_10445	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J0J69_10460	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J0J69_10465	COG0459	protein refolding
J0J69_10470	COG0736	holo-[acyl-carrier-protein] synthase activity
J0J69_10475	COG2155	Conserved Protein
J0J69_10480	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J0J69_10485	COG0745	RESPONSE REGULATOR receiver
J0J69_10490	COG5002	protein histidine kinase activity
J0J69_10495	COG0436	Aminotransferase
J0J69_10500	COG4991	sh3 domain protein
J0J69_10500	COG3103	Sh3 type 3 domain protein
J0J69_10500	COG0860	N-Acetylmuramoyl-L-alanine amidase
J0J69_10505	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J0J69_10510	COG2137	regulation of response to DNA damage stimulus
J0J69_10515	COG2188	Transcriptional regulator
J0J69_10530	COG0366	Alpha amylase catalytic
J0J69_10535	COG0739	heme binding
J0J69_10540	COG4536	flavin adenine dinucleotide binding
J0J69_10550	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J0J69_10555	COG1597	lipid kinase activity
J0J69_10565	COG5263	repeat protein
J0J69_10565	COG4193	domain, Protein
J0J69_10580	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J0J69_10585	COG0210	DNA helicase
J0J69_10590	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J0J69_10600	COG2205	protein histidine kinase activity
J0J69_10600	COG0784	Response regulator, receiver
J0J69_10605	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J0J69_10615	COG3583	domain protein
J0J69_10620	COG1950	PFAM Membrane protein of
J0J69_10635	COG0546	phosphoglycolate phosphatase activity
J0J69_10660	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J0J69_10665	COG1481	regulation of sporulation
J0J69_10680	COG0148	phosphopyruvate hydratase activity
J0J69_10685	COG0628	permease
J0J69_10690	COG0530	calcium, potassium:sodium antiporter activity
J0J69_10700	COG0557	exoribonuclease II activity
J0J69_10705	COG2843	Capsule synthesis protein
J0J69_10710	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J0J69_10730	COG1696	Membrane protein involved in D-alanine export
J0J69_10740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J0J69_10745	COG1116	anion transmembrane transporter activity
J0J69_10750	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J0J69_10760	COG1175	transmembrane transport
J0J69_10765	COG0395	ABC-type sugar transport system, permease component
J0J69_10770	COG1653	transport
J0J69_10775	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J0J69_10780	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J0J69_10785	COG4372	Transposase
J0J69_10800	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J0J69_10805	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J0J69_10815	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
J0J69_10820	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J0J69_10835	COG1272	protein, Hemolysin III
J0J69_10840	COG3681	Belongs to the UPF0597 family
J0J69_10845	COG2268	Band 7 protein
J0J69_10850	COG1876	peptidase activity
J0J69_10865	COG0628	permease
J0J69_10880	COG2217	Heavy metal translocating P-type atpase
J0J69_10890	COG5002	protein histidine kinase activity
J0J69_10895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0J69_10915	COG5001	Diguanylate cyclase
J0J69_10915	COG3300	MHYT domain
J0J69_10925	COG1937	Protein conserved in bacteria
J0J69_10930	COG2217	Heavy metal translocating P-type atpase
J0J69_10935	COG2217	Heavy metal translocating P-type atpase
J0J69_10960	COG0534	Mate efflux family protein
J0J69_10970	COG0590	tRNA wobble adenosine to inosine editing
J0J69_11000	COG1234	tRNA 3'-trailer cleavage
J0J69_11005	COG0346	lactoylglutathione lyase activity
J0J69_11025	COG1501	Belongs to the glycosyl hydrolase 31 family
J0J69_11030	COG0561	phosphatase activity
J0J69_11040	COG2207	Transcriptional regulator
J0J69_11045	COG0277	FAD linked oxidase domain protein
J0J69_11050	COG0534	Mate efflux family protein
J0J69_11055	COG2033	superoxide reductase activity
J0J69_11065	COG0748	coenzyme F420 binding
J0J69_11075	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J0J69_11090	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
J0J69_11100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J0J69_11105	COG1120	ATPase activity
J0J69_11120	COG0748	coenzyme F420 binding
J0J69_11140	COG2364	Membrane
J0J69_11145	COG2207	Transcriptional regulator
J0J69_11150	COG2818	Glycosylase
J0J69_11170	COG1136	(ABC) transporter
J0J69_11200	COG1705	Flagellar rod assembly protein muramidase FlgJ
J0J69_11205	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J0J69_11210	COG0456	acetyltransferase
J0J69_11225	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J0J69_11240	COG1187	pseudouridine synthase activity
J0J69_11250	COG4807	Protein conserved in bacteria
J0J69_11275	COG0019	diaminopimelate decarboxylase activity
J0J69_11285	COG1473	amidohydrolase
J0J69_11290	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J0J69_11305	COG2171	N-acyltransferase activity
J0J69_11310	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J0J69_11325	COG0640	Transcriptional regulator
J0J69_11350	COG2378	regulation of single-species biofilm formation
J0J69_11355	COG1473	amidohydrolase
J0J69_11360	COG2723	6-phospho-beta-galactosidase activity
J0J69_11365	COG0768	penicillin binding
J0J69_11440	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J0J69_11535	COG2801	Transposase and inactivated derivatives
J0J69_11580	COG0561	phosphatase activity
J0J69_11585	COG2267	carboxylic ester hydrolase activity
J0J69_11645	COG1215	transferase activity, transferring glycosyl groups
J0J69_11650	COG3328	transposase activity
J0J69_11695	COG0583	DNA-binding transcription factor activity
J0J69_11720	COG0070	glutamate synthase
J0J69_11720	COG0069	glutamate synthase activity
J0J69_11720	COG0067	glutamate synthase
J0J69_11725	COG4372	Transposase
J0J69_11765	COG5002	protein histidine kinase activity
J0J69_11770	COG0745	RESPONSE REGULATOR receiver
J0J69_11775	COG1533	DNA photolyase activity
J0J69_11780	COG3711	transcriptional antiterminator
J0J69_11785	COG1263	PTS System
J0J69_11785	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_11785	COG2190	(PTS) system
J0J69_11790	COG2723	6-phospho-beta-galactosidase activity
J0J69_11795	COG1316	TRANSCRIPTIONal
J0J69_11800	COG0826	peptidase U32
J0J69_11805	COG2323	membrane
J0J69_11810	COG0037	tRNA processing
J0J69_11830	COG1393	Belongs to the ArsC family
J0J69_11835	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J0J69_11840	COG3557	Belongs to the UPF0374 family
J0J69_11845	COG2309	aminopeptidase activity
J0J69_11940	COG1175	transmembrane transport
J0J69_11945	COG3833	ABC-type maltose transport systems, permease component
J0J69_11950	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J0J69_11975	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J0J69_12005	COG3711	transcriptional antiterminator
J0J69_12010	COG1263	PTS System
J0J69_12010	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_12010	COG2190	(PTS) system
J0J69_12015	COG2723	6-phospho-beta-galactosidase activity
J0J69_12090	COG3263	regulation of cellular component size
J0J69_12095	COG1192	Involved in chromosome partitioning
J0J69_12115	COG1011	Hydrolase
J0J69_12125	COG0577	efflux transmembrane transporter activity
J0J69_12130	COG1136	(ABC) transporter
J0J69_12135	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J0J69_12140	COG0583	DNA-binding transcription factor activity
J0J69_12145	COG3620	sequence-specific DNA binding
J0J69_12150	COG0393	Putative heavy-metal-binding
J0J69_12170	COG2207	Transcriptional regulator
J0J69_12175	COG0534	Mate efflux family protein
J0J69_12180	COG2207	Transcriptional regulator
J0J69_12190	COG1175	transmembrane transport
J0J69_12195	COG0395	ABC-type sugar transport system, permease component
J0J69_12205	COG2211	Major facilitator Superfamily
J0J69_12210	COG0297	glycogen (starch) synthase activity
J0J69_12215	COG0024	Methionine aminopeptidase
J0J69_12220	COG3250	beta-galactosidase activity
J0J69_12225	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J0J69_12235	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J0J69_12250	COG1609	Transcriptional regulator
J0J69_12255	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J0J69_12260	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
J0J69_12265	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J0J69_12270	COG3867	Arabinogalactan endo-beta-1,4-galactanase
J0J69_12290	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J0J69_12295	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J0J69_12305	COG1811	Na channel or pump
J0J69_12320	COG0006	proline dipeptidase activity
J0J69_12335	COG1283	sodium-dependent phosphate transmembrane transporter activity
J0J69_12340	COG0396	ATPase activity
J0J69_12345	COG0719	Fe-S assembly protein
J0J69_12350	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J0J69_12355	COG0822	iron-sulfur transferase activity
J0J69_12360	COG0719	Fe-S assembly protein
J0J69_12370	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
J0J69_12375	COG3377	Domain of unknown function (DUF1805)
J0J69_12385	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J0J69_12390	COG0297	glycogen (starch) synthase activity
J0J69_12395	COG0058	SHG alpha-glucan phosphorylase activity
J0J69_12425	COG1403	HNH endonuclease
J0J69_12440	COG0659	secondary active sulfate transmembrane transporter activity
J0J69_12445	COG1061	Type III restriction enzyme res subunit
J0J69_12465	COG0613	PHP domain protein
J0J69_12485	COG1823	symporter activity
J0J69_12490	COG2340	Cysteine-rich secretory protein family
J0J69_12495	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J0J69_12500	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J0J69_12520	COG4667	esterase of the alpha-beta hydrolase superfamily
J0J69_12525	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J0J69_12530	COG0242	peptide deformylase activity
J0J69_12550	COG0210	DNA helicase
J0J69_12575	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J0J69_12580	COG2011	ABC-type metal ion transport system permease component
J0J69_12585	COG1464	Belongs to the NlpA lipoprotein family
J0J69_12590	COG1473	amidohydrolase
J0J69_12605	COG2985	domain, Protein
J0J69_12610	COG3885	ferrous iron binding
J0J69_12610	COG2078	PFAM AMMECR1 domain protein
J0J69_12635	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J0J69_12655	COG1609	Transcriptional regulator
J0J69_12660	COG1263	PTS System
J0J69_12660	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J0J69_12665	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J0J69_12670	COG1621	beta-fructofuranosidase activity
J0J69_12685	COG0513	Belongs to the DEAD box helicase family
J0J69_12690	COG2364	Membrane
J0J69_12695	COG1523	belongs to the glycosyl hydrolase 13 family
J0J69_12700	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J0J69_12705	COG3481	metal-dependent phosphohydrolase, HD sub domain
J0J69_12710	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J0J69_12735	COG3290	protein histidine kinase activity
J0J69_12760	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J0J69_12765	COG0297	glycogen (starch) synthase activity
J0J69_12770	COG0302	gtp cyclohydrolase
J0J69_12780	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J0J69_12785	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J0J69_12790	COG0457	Tetratricopeptide repeat
J0J69_12795	COG2738	Putative neutral zinc metallopeptidase
J0J69_12805	COG1595	DNA-templated transcription, initiation
J0J69_12815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J0J69_12820	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J0J69_12825	COG0617	tRNA 3'-terminal CCA addition
J0J69_12835	COG3935	DnaD domain protein
J0J69_12840	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J0J69_12845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J0J69_12845	COG4499	WXG100 protein secretion system (Wss), protein YukC
J0J69_12850	COG3331	DNA recombination
J0J69_12865	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J0J69_12880	COG1692	metallophosphoesterase
J0J69_12885	COG2359	stage V sporulation protein S
J0J69_12890	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J0J69_12895	COG4550	Control of competence regulator ComK, YlbF/YmcA
J0J69_12905	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J0J69_12910	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J0J69_12920	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J0J69_12940	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J0J69_12950	COG3763	UPF0154 protein
J0J69_12960	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J0J69_12965	COG0187	DNA topoisomerase II activity
J0J69_12970	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J0J69_12985	COG1702	phosphate starvation-inducible protein PhoH
J0J69_12990	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J0J69_12995	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J0J69_13000	COG0295	cytidine deaminase activity
J0J69_13015	COG1381	Involved in DNA repair and RecF pathway recombination
J0J69_13020	COG0423	glycine-tRNA ligase activity
J0J69_13025	COG0358	DNA primase activity
J0J69_13030	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J0J69_13035	COG2384	SAM-dependent methyltransferase
J0J69_13040	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J0J69_13045	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J0J69_13050	COG0072	phenylalanine-tRNA ligase activity
J0J69_13050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J0J69_13055	COG1605	Chorismate mutase
J0J69_13055	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
J0J69_13060	COG1609	Transcriptional regulator
J0J69_13085	COG0583	DNA-binding transcription factor activity
J0J69_13095	COG1956	GAF domain-containing protein
J0J69_13105	COG1104	cysteine desulfurase activity
J0J69_13115	COG1454	alcohol dehydrogenase
J0J69_13115	COG1012	belongs to the aldehyde dehydrogenase family
J0J69_13145	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J0J69_13150	COG0779	Required for maturation of 30S ribosomal subunits
J0J69_13155	COG0195	Participates in both transcription termination and antitermination
J0J69_13160	COG2740	Nucleic-acid-binding protein implicated in transcription termination
J0J69_13175	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J0J69_13180	COG1368	sulfuric ester hydrolase activity
J0J69_13190	COG0322	excinuclease ABC activity
J0J69_13195	COG2197	response regulator
J0J69_13215	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J0J69_13225	COG0622	Phosphoesterase
J0J69_13255	COG1496	oxidoreductase activity
J0J69_13260	COG0569	domain protein
J0J69_13265	COG0569	domain protein
J0J69_13275	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J0J69_13280	COG0561	phosphatase activity
J0J69_13290	COG0242	peptide deformylase activity
J0J69_13320	COG0772	Belongs to the SEDS family
J0J69_13345	COG4471	UPF0298 protein
J0J69_13350	COG0228	four-way junction DNA binding
J0J69_13355	COG1837	Belongs to the UPF0109 family
J0J69_13395	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J0J69_13400	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J0J69_13410	COG0181	hydroxymethylbilane synthase activity
J0J69_13420	COG0113	porphobilinogen synthase activity
J0J69_13425	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J0J69_13425	COG1648	precorrin-2 dehydrogenase activity
J0J69_13430	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J0J69_13435	COG0765	amino acid transport
J0J69_13440	COG1126	abc transporter atp-binding protein
J0J69_13455	COG2207	Transcriptional regulator
J0J69_13455	COG4753	response regulator