locus-tag	class	description
Turpa_0001	COG3415	Transposase
Turpa_0001	COG2801	Transposase and inactivated derivatives
Turpa_0004	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Turpa_0008	COG1192	Involved in chromosome partitioning
Turpa_0009	COG1475	DNA binding
Turpa_0013	COG0235	Class ii aldolase
Turpa_0014	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
Turpa_0015	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
Turpa_0017	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Turpa_0019	COG1858	cytochrome C peroxidase
Turpa_0025	COG0602	queuosine metabolic process
Turpa_0026	COG0720	synthase
Turpa_0028	COG0424	maF-like protein
Turpa_0029	COG2363	Small membrane protein
Turpa_0030	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Turpa_0033	COG0708	Exodeoxyribonuclease III
Turpa_0037	COG2963	transposase activity
Turpa_0042	COG2801	Transposase and inactivated derivatives
Turpa_0044	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Turpa_0055	COG0732	type I restriction modification DNA specificity domain
Turpa_0059	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_0061	COG0666	response to abiotic stimulus
Turpa_0066	COG2801	Transposase and inactivated derivatives
Turpa_0067	COG1475	DNA binding
Turpa_0084	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Turpa_0099	COG5002	protein histidine kinase activity
Turpa_0099	COG0784	Response regulator, receiver
Turpa_0107	COG1022	Amp-dependent synthetase and ligase
Turpa_0108	COG0494	nUDIX hydrolase
Turpa_0115	COG0698	ribose 5-phosphate isomerase
Turpa_0129	COG0537	adenosine 5'-monophosphoramidase activity
Turpa_0131	COG1252	NADH dehydrogenase
Turpa_0137	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Turpa_0139	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Turpa_0142	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Turpa_0144	COG0517	IMP dehydrogenase activity
Turpa_0144	COG0516	GMP reductase activity
Turpa_0146	COG0525	valine-tRNA ligase activity
Turpa_0148	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_0160	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Turpa_0162	COG1074	ATP-dependent DNA helicase activity
Turpa_0163	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Turpa_0167	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Turpa_0171	COG1696	Membrane protein involved in D-alanine export
Turpa_0174	COG0625	glutathione transferase activity
Turpa_0175	COG2385	sporulation resulting in formation of a cellular spore
Turpa_0176	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Turpa_0179	COG1560	Kdo2-lipid A biosynthetic process
Turpa_0184	COG1138	Cytochrome C-type biogenesis protein
Turpa_0185	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
Turpa_0188	COG0667	Aldo Keto reductase
Turpa_0189	COG2259	Doxx family
Turpa_0193	COG1366	Belongs to the anti-sigma-factor antagonist family
Turpa_0197	COG0247	lactate metabolic process
Turpa_0197	COG2181	nitrate reductase activity
Turpa_0198	COG1917	Cupin 2, conserved barrel domain protein
Turpa_0198	COG2169	Transcriptional regulator
Turpa_0199	COG0318	PFAM AMP-dependent synthetase and ligase
Turpa_0204	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Turpa_0208	COG0815	Transfers the fatty acyl group on membrane lipoproteins
Turpa_0216	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Turpa_0225	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Turpa_0229	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Turpa_0230	COG0346	lactoylglutathione lyase activity
Turpa_0232	COG1111	helicase
Turpa_0232	COG1205	dead DEAH box helicase
Turpa_0235	COG0009	L-threonylcarbamoyladenylate synthase
Turpa_0236	COG4221	oxidoreductase activity
Turpa_0238	COG0495	leucyl-tRNA aminoacylation
Turpa_0241	COG0629	single-stranded DNA binding
Turpa_0247	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Turpa_0248	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Turpa_0252	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Turpa_0255	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Turpa_0255	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Turpa_0258	COG0415	Belongs to the DNA photolyase family
Turpa_0262	COG0527	aspartate kinase activity
Turpa_0263	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Turpa_0270	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Turpa_0274	COG1053	succinate dehydrogenase
Turpa_0284	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
Turpa_0285	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_0287	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
Turpa_0290	COG0577	efflux transmembrane transporter activity
Turpa_0290	COG1136	(ABC) transporter
Turpa_0297	COG1960	acyl-CoA dehydrogenase activity
Turpa_0300	COG1088	dTDP-glucose 4,6-dehydratase activity
Turpa_0301	COG0463	Glycosyl transferase, family 2
Turpa_0317	COG0367	asparagine synthase
Turpa_0318	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Turpa_0319	COG1088	dTDP-glucose 4,6-dehydratase activity
Turpa_0324	COG0367	asparagine synthase
Turpa_0328	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Turpa_0331	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_0334	COG2211	Major facilitator Superfamily
Turpa_0343	COG3220	belongs to the UPF0276 family
Turpa_0348	COG2205	protein histidine kinase activity
Turpa_0355	COG0154	amidase activity
Turpa_0360	COG0039	L-malate dehydrogenase activity
Turpa_0361	COG1368	sulfuric ester hydrolase activity
Turpa_0370	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
Turpa_0373	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Turpa_0375	COG1045	serine acetyltransferase
Turpa_0378	COG1218	3'(2'),5'-bisphosphate nucleotidase
Turpa_0379	COG0277	FAD linked oxidase domain protein
Turpa_0381	COG3956	TIGRFAM MazG family protein
Turpa_0389	COG3387	PFAM Glycoside hydrolase 15-related
Turpa_0391	COG1360	Flagellar Motor Protein
Turpa_0394	COG4399	Belongs to the UPF0754 family
Turpa_0395	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Turpa_0397	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Turpa_0399	COG0538	isocitrate dehydrogenase activity
Turpa_0400	COG1024	Enoyl-CoA hydratase
Turpa_0402	COG1960	acyl-CoA dehydrogenase activity
Turpa_0408	COG0440	acetolactate synthase activity
Turpa_0411	COG0004	ammonium transporteR
Turpa_0412	COG5001	Diguanylate cyclase
Turpa_0412	COG3300	MHYT domain
Turpa_0414	COG4206	TonB-dependent receptor
Turpa_0416	COG1253	flavin adenine dinucleotide binding
Turpa_0418	COG0205	6-phosphofructokinase activity
Turpa_0419	COG1024	Enoyl-CoA hydratase
Turpa_0420	COG0840	transmembrane signaling receptor activity
Turpa_0421	COG0251	oxidation-reduction process
Turpa_0424	COG2208	phosphoserine phosphatase activity
Turpa_0433	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_0435	COG0402	S-adenosylhomocysteine deaminase activity
Turpa_0439	COG2089	acid synthase
Turpa_0440	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Turpa_0448	COG2201	protein-glutamate methylesterase activity
Turpa_0449	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
Turpa_0450	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Turpa_0452	COG1611	Belongs to the LOG family
Turpa_0455	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Turpa_0455	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Turpa_0456	COG0326	Molecular chaperone. Has ATPase activity
Turpa_0457	COG2770	Histidine kinase
Turpa_0457	COG2208	phosphoserine phosphatase activity
Turpa_0460	COG4106	trans-aconitate 2-methyltransferase activity
Turpa_0461	COG0500	methyltransferase
Turpa_0464	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Turpa_0466	COG0233	cytoplasmic translational termination
Turpa_0469	COG0134	indole-3-glycerol-phosphate synthase activity
Turpa_0470	COG2239	Acts as a magnesium transporter
Turpa_0471	COG2832	Protein of unknown function (DUF454)
Turpa_0472	COG1366	Belongs to the anti-sigma-factor antagonist family
Turpa_0477	COG2197	response regulator
Turpa_0491	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_0494	COG1338	Plays a role in the flagellum-specific transport system
Turpa_0496	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Turpa_0502	COG1366	Belongs to the anti-sigma-factor antagonist family
Turpa_0504	COG0564	pseudouridine synthase activity
Turpa_0510	COG1012	belongs to the aldehyde dehydrogenase family
Turpa_0512	COG0505	Belongs to the CarA family
Turpa_0518	COG0601	transmembrane transport
Turpa_0527	COG1943	Transposase
Turpa_0538	COG3813	Protein conserved in bacteria
Turpa_0542	COG1595	DNA-templated transcription, initiation
Turpa_0551	COG2801	Transposase and inactivated derivatives
Turpa_0573	COG2801	Transposase and inactivated derivatives
Turpa_0580	COG0584	glycerophosphoryl diester phosphodiesterase
Turpa_0581	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Turpa_0582	COG0167	dihydroorotate dehydrogenase activity
Turpa_0586	COG1408	metallophosphoesterase
Turpa_0590	COG0750	zinc metalloprotease
Turpa_0596	COG1858	cytochrome C peroxidase
Turpa_0603	COG1639	'signal transduction protein
Turpa_0606	COG0724	RNA recognition motif
Turpa_0607	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Turpa_0609	COG0731	radical SAM domain protein
Turpa_0611	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Turpa_0613	COG4676	Protein conserved in bacteria
Turpa_0614	COG2720	vancomycin resistance protein
Turpa_0615	COG2373	Large extracellular alpha-helical protein
Turpa_0619	COG1469	GTP cyclohydrolase I activity
Turpa_0622	COG4585	Histidine kinase
Turpa_0624	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Turpa_0626	COG0302	gtp cyclohydrolase
Turpa_0629	COG0019	diaminopimelate decarboxylase activity
Turpa_0630	COG0450	alkyl hydroperoxide reductase
Turpa_0637	COG2217	Heavy metal translocating P-type atpase
Turpa_0644	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Turpa_0645	COG0280	phosphate acetyltransferase
Turpa_0648	COG1830	Aldolase
Turpa_0651	COG2267	carboxylic ester hydrolase activity
Turpa_0652	COG3118	belongs to the thioredoxin family
Turpa_0653	COG0517	IMP dehydrogenase activity
Turpa_0653	COG1994	Peptidase M50
Turpa_0654	COG1160	GTP binding
Turpa_0658	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Turpa_0663	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Turpa_0663	COG2813	Specifically methylates the guanine in position
Turpa_0671	COG1250	3-hydroxyacyl-CoA dehydrogenase
Turpa_0672	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Turpa_0676	COG0318	PFAM AMP-dependent synthetase and ligase
Turpa_0683	COG2072	flavoprotein involved in K transport
Turpa_0685	COG2226	methyltransferase
Turpa_0690	COG0745	RESPONSE REGULATOR receiver
Turpa_0691	COG0156	8-amino-7-oxononanoate synthase activity
Turpa_0694	COG1999	signal sequence binding
Turpa_0698	COG0745	RESPONSE REGULATOR receiver
Turpa_0698	COG3706	GGDEF domain
Turpa_0699	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Turpa_0707	COG3876	Protein conserved in bacteria
Turpa_0708	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Turpa_0708	COG1918	ferrous iron import across plasma membrane
Turpa_0717	COG3842	ATPase activity
Turpa_0721	COG0395	ABC-type sugar transport system, permease component
Turpa_0725	COG1523	belongs to the glycosyl hydrolase 13 family
Turpa_0728	COG0297	glycogen (starch) synthase activity
Turpa_0729	COG1523	belongs to the glycosyl hydrolase 13 family
Turpa_0730	COG0339	signal peptide processing
Turpa_0731	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Turpa_0735	COG1640	4-alpha-glucanotransferase
Turpa_0736	COG0058	SHG alpha-glucan phosphorylase activity
Turpa_0737	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
Turpa_0742	COG0259	pyridoxamine-phosphate oxidase activity
Turpa_0743	COG1309	transcriptional regulator
Turpa_0751	COG1393	Belongs to the ArsC family
Turpa_0752	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Turpa_0759	COG0517	IMP dehydrogenase activity
Turpa_0763	COG0142	geranyltranstransferase activity
Turpa_0766	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Turpa_0768	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Turpa_0793	COG2198	Histidine kinase
Turpa_0793	COG0643	Histidine kinase
Turpa_0807	COG0799	negative regulation of ribosome biogenesis
Turpa_0815	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Turpa_0819	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Turpa_0826	COG0798	PFAM Bile acid sodium symporter
Turpa_0827	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Turpa_0831	COG1773	rubredoxin
Turpa_0833	COG4221	oxidoreductase activity
Turpa_0834	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Turpa_0837	COG0659	secondary active sulfate transmembrane transporter activity
Turpa_0847	COG1598	PFAM Uncharacterised protein family UPF0150
Turpa_0860	COG1942	4-Oxalocrotonate Tautomerase
Turpa_0865	COG3046	protein related to deoxyribodipyrimidine photolyase
Turpa_0866	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_0869	COG2226	methyltransferase
Turpa_0869	COG0596	Alpha beta hydrolase
Turpa_0869	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Turpa_0872	COG1490	D-aminoacyl-tRNA deacylase activity
Turpa_0879	COG1595	DNA-templated transcription, initiation
Turpa_0883	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Turpa_0889	COG0475	glutathione-regulated potassium exporter activity
Turpa_0893	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Turpa_0898	COG0069	glutamate synthase activity
Turpa_0898	COG0070	glutamate synthase
Turpa_0898	COG0067	glutamate synthase
Turpa_0901	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Turpa_0908	COG0455	bacterial-type flagellum organization
Turpa_0909	COG1419	protein localization to endoplasmic reticulum
Turpa_0938	COG2205	protein histidine kinase activity
Turpa_0943	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Turpa_0951	COG2226	methyltransferase
Turpa_0963	COG1741	Belongs to the pirin family
Turpa_0964	COG3852	Histidine kinase
Turpa_0968	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Turpa_0970	COG2814	Major facilitator Superfamily
Turpa_0979	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Turpa_0981	COG0252	asparaginase activity
Turpa_0983	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Turpa_0984	COG1132	(ABC) transporter
Turpa_0990	COG0205	6-phosphofructokinase activity
Turpa_0999	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
Turpa_1000	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Turpa_1020	COG2249	NAD(P)H dehydrogenase (quinone) activity
Turpa_1021	COG1695	Transcriptional regulator
Turpa_1030	COG3876	Protein conserved in bacteria
Turpa_1036	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Turpa_1042	COG0138	bifunctional purine biosynthesis protein purh
Turpa_1053	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Turpa_1060	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_1076	COG1272	protein, Hemolysin III
Turpa_1078	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Turpa_1082	COG1999	signal sequence binding
Turpa_1084	COG0628	permease
Turpa_1101	COG4399	Belongs to the UPF0754 family
Turpa_1104	COG0730	response to heat
Turpa_1109	COG2366	antibiotic biosynthetic process
Turpa_1111	COG1082	Xylose isomerase domain protein TIM barrel
Turpa_1116	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Turpa_1120	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Turpa_1124	COG0514	ATP-dependent DNA helicase (RecQ)
Turpa_1126	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_1128	COG2356	endonuclease I
Turpa_1130	COG0366	Alpha amylase catalytic
Turpa_1131	COG2198	Histidine kinase
Turpa_1131	COG0643	Histidine kinase
Turpa_1132	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_1138	COG0446	pyridine nucleotide-disulphide oxidoreductase
Turpa_1143	COG0745	RESPONSE REGULATOR receiver
Turpa_1144	COG2205	protein histidine kinase activity
Turpa_1144	COG2202	Pas domain
Turpa_1145	COG3437	response regulator, receiver
Turpa_1148	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_1149	COG2204	response regulator
Turpa_1152	COG1643	Atp-dependent helicase
Turpa_1156	COG1090	epimerase
Turpa_1159	COG1012	belongs to the aldehyde dehydrogenase family
Turpa_1162	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Turpa_1167	COG2201	protein-glutamate methylesterase activity
Turpa_1169	COG2353	YceI-like domain
Turpa_1170	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_1171	COG2198	Histidine kinase
Turpa_1171	COG0643	Histidine kinase
Turpa_1175	COG1960	acyl-CoA dehydrogenase activity
Turpa_1179	COG1858	cytochrome C peroxidase
Turpa_1183	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Turpa_1187	COG0745	RESPONSE REGULATOR receiver
Turpa_1187	COG3706	GGDEF domain
Turpa_1188	COG5002	protein histidine kinase activity
Turpa_1188	COG5001	Diguanylate cyclase
Turpa_1188	COG3447	MASE1 domain protein
Turpa_1191	COG1366	Belongs to the anti-sigma-factor antagonist family
Turpa_1192	COG1181	Belongs to the D-alanine--D-alanine ligase family
Turpa_1196	COG0284	orotidine-5'-phosphate decarboxylase activity
Turpa_1198	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Turpa_1202	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_1205	COG0163	prenyltransferase activity
Turpa_1208	COG0702	epimerase
Turpa_1209	COG3011	Protein conserved in bacteria
Turpa_1210	COG2267	carboxylic ester hydrolase activity
Turpa_1221	COG4636	protein conserved in cyanobacteria
Turpa_1222	COG0330	HflC and HflK could
Turpa_1225	COG1024	Enoyl-CoA hydratase
Turpa_1244	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Turpa_1244	COG4651	solute:proton antiporter activity
Turpa_1245	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Turpa_1248	COG1121	(ABC) transporter
Turpa_1249	COG1703	isobutyryl-CoA mutase activity
Turpa_1256	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Turpa_1263	COG1943	Transposase
Turpa_1265	COG2208	phosphoserine phosphatase activity
Turpa_1266	COG2208	phosphoserine phosphatase activity
Turpa_1266	COG2770	Histidine kinase
Turpa_1267	COG0545	Peptidyl-prolyl cis-trans isomerase
Turpa_1280	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Turpa_1285	COG3608	succinylglutamate desuccinylase aspartoacylase
Turpa_1285	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Turpa_1286	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Turpa_1287	COG2080	2 iron, 2 sulfur cluster binding
Turpa_1292	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Turpa_1293	COG2321	neutral zinc metallopeptidase
Turpa_1297	COG3268	Saccharopine dehydrogenase
Turpa_1301	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Turpa_1306	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_1318	COG1136	(ABC) transporter
Turpa_1319	COG2197	response regulator
Turpa_1320	COG5002	protein histidine kinase activity
Turpa_1322	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Turpa_1324	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Turpa_1349	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Turpa_1351	COG1845	cytochrome c oxidase, subunit III
Turpa_1355	COG0429	hydrolase of the alpha beta-hydrolase fold
Turpa_1357	COG2963	transposase activity
Turpa_1359	COG0321	lipoyl(octanoyl) transferase activity
Turpa_1359	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Turpa_1360	COG1024	Enoyl-CoA hydratase
Turpa_1361	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Turpa_1362	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Turpa_1365	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
Turpa_1366	COG0142	geranyltranstransferase activity
Turpa_1371	COG0045	succinate-CoA ligase (ADP-forming) activity
Turpa_1378	COG1509	lysine 2,3-aminomutase activity
Turpa_1384	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
Turpa_1395	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Turpa_1397	COG0564	pseudouridine synthase activity
Turpa_1400	COG0022	dehydrogenase e1 component
Turpa_1400	COG0508	dehydrogenase complex catalyzes the overall conversion of
Turpa_1401	COG0242	peptide deformylase activity
Turpa_1402	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
Turpa_1404	COG0358	DNA primase activity
Turpa_1404	COG0305	Participates in initiation and elongation during chromosome replication
Turpa_1406	COG0617	tRNA 3'-terminal CCA addition
Turpa_1407	COG2121	Domain of unknown function (DUF374)
Turpa_1409	COG0489	protein tyrosine kinase activity
Turpa_1410	COG2814	Major facilitator Superfamily
Turpa_1412	COG1960	acyl-CoA dehydrogenase activity
Turpa_1414	COG1215	transferase activity, transferring glycosyl groups
Turpa_1420	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Turpa_1421	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Turpa_1422	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_1428	COG0071	Belongs to the small heat shock protein (HSP20) family
Turpa_1434	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Turpa_1435	COG2030	dehydratase
Turpa_1437	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Turpa_1438	COG0275	rRNA processing
Turpa_1447	COG0500	methyltransferase
Turpa_1449	COG0594	ribonuclease P activity
Turpa_1454	COG2329	Antibiotic biosynthesis monooxygenase
Turpa_1455	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Turpa_1456	COG2311	Membrane
Turpa_1457	COG2814	Major facilitator Superfamily
Turpa_1459	COG4456	Virulence-associated protein
Turpa_1460	COG1487	ribonuclease activity
Turpa_1461	COG1073	alpha beta
Turpa_1462	COG0564	pseudouridine synthase activity
Turpa_1475	COG4221	oxidoreductase activity
Turpa_1485	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_1487	COG0531	amino acid
Turpa_1488	COG2076	Multidrug Resistance protein
Turpa_1496	COG2801	Transposase and inactivated derivatives
Turpa_1500	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Turpa_1506	COG2963	transposase activity
Turpa_1519	COG0625	glutathione transferase activity
Turpa_1522	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_1523	COG0586	Pfam SNARE associated Golgi protein
Turpa_1527	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Turpa_1529	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Turpa_1531	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Turpa_1531	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Turpa_1532	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Turpa_1536	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Turpa_1540	COG0632	four-way junction helicase activity
Turpa_1542	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
Turpa_1548	COG0318	PFAM AMP-dependent synthetase and ligase
Turpa_1550	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Turpa_1552	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
Turpa_1554	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Turpa_1557	COG0187	DNA topoisomerase II activity
Turpa_1565	COG0587	DNA-directed DNA polymerase activity
Turpa_1567	COG2197	response regulator
Turpa_1577	COG0352	thiamine-phosphate diphosphorylase activity
Turpa_1577	COG0351	phosphomethylpyrimidine kinase
Turpa_1585	COG0709	Synthesizes selenophosphate from selenide and ATP
Turpa_1586	COG0590	tRNA wobble adenosine to inosine editing
Turpa_1590	COG2723	6-phospho-beta-galactosidase activity
Turpa_1597	COG0640	Transcriptional regulator
Turpa_1601	COG0713	ATP synthesis coupled electron transport
Turpa_1603	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Turpa_1604	COG1007	ATP synthesis coupled electron transport
Turpa_1606	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Turpa_1609	COG2201	protein-glutamate methylesterase activity
Turpa_1618	COG0463	Glycosyl transferase, family 2
Turpa_1627	COG0084	hydrolase, TatD family'
Turpa_1640	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
Turpa_1645	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Turpa_1645	COG2755	lipolytic protein G-D-S-L family
Turpa_1666	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Turpa_1666	COG2755	lipolytic protein G-D-S-L family
Turpa_1669	COG0386	Belongs to the glutathione peroxidase family
Turpa_1670	COG1024	Enoyl-CoA hydratase
Turpa_1677	COG3118	belongs to the thioredoxin family
Turpa_1688	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_1689	COG0784	Response regulator, receiver
Turpa_1689	COG2205	protein histidine kinase activity
Turpa_1689	COG5002	protein histidine kinase activity
Turpa_1697	COG0210	DNA helicase
Turpa_1699	COG3706	GGDEF domain
Turpa_1699	COG0745	RESPONSE REGULATOR receiver
Turpa_1700	COG1716	ATPase activity
Turpa_1700	COG5001	Diguanylate cyclase
Turpa_1701	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
Turpa_1711	COG3177	Filamentation induced by cAMP protein fic
Turpa_1713	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_1717	COG2963	transposase activity
Turpa_1724	COG1741	Belongs to the pirin family
Turpa_1730	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
Turpa_1739	COG4335	DNA alkylation repair
Turpa_1756	COG2361	Protein of unknown function DUF86
Turpa_1760	COG0318	PFAM AMP-dependent synthetase and ligase
Turpa_1761	COG0009	L-threonylcarbamoyladenylate synthase
Turpa_1776	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Turpa_1777	COG1051	belongs to the nudix hydrolase family
Turpa_1779	COG0439	Biotin carboxylase
Turpa_1783	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Turpa_1784	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Turpa_1791	COG5002	protein histidine kinase activity
Turpa_1792	COG2366	antibiotic biosynthetic process
Turpa_1796	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Turpa_1797	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Turpa_1798	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Turpa_1799	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Turpa_1803	COG2200	EAL domain
Turpa_1805	COG1309	transcriptional regulator
Turpa_1808	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Turpa_1809	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Turpa_1812	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
Turpa_1813	COG0488	(ABC) transporter
Turpa_1815	COG0488	(ABC) transporter
Turpa_1817	COG0735	belongs to the Fur family
Turpa_1824	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Turpa_1824	COG0574	Belongs to the PEP-utilizing enzyme family
Turpa_1828	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Turpa_1828	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Turpa_1829	COG4956	integral membrane protein (PIN domain superfamily)
Turpa_1830	COG1329	Transcriptional regulator
Turpa_1834	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Turpa_1835	COG0513	Belongs to the DEAD box helicase family
Turpa_1840	COG0402	S-adenosylhomocysteine deaminase activity
Turpa_1841	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Turpa_1843	COG0438	transferase activity, transferring glycosyl groups
Turpa_1845	COG1741	Belongs to the pirin family
Turpa_1847	COG0330	HflC and HflK could
Turpa_1849	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Turpa_1850	COG1077	Cell shape determining protein MreB Mrl
Turpa_1853	COG0285	dihydrofolate synthase activity
Turpa_1857	COG2095	MarC family integral membrane protein
Turpa_1863	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Turpa_1866	COG3239	Fatty acid desaturase
Turpa_1867	COG0281	malic enzyme
Turpa_1873	COG0745	RESPONSE REGULATOR receiver
Turpa_1885	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
Turpa_1890	COG4591	ABC-type transport system involved in lipoprotein release permease component
Turpa_1890	COG1136	(ABC) transporter
Turpa_1897	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Turpa_1899	COG2318	DinB family
Turpa_1901	COG2823	Periplasmic or secreted lipoprotein
Turpa_1901	COG1652	LysM domain
Turpa_1904	COG1597	lipid kinase activity
Turpa_1907	COG1639	'signal transduction protein
Turpa_1912	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Turpa_1918	COG3850	Histidine kinase
Turpa_1918	COG3437	response regulator, receiver
Turpa_1918	COG2205	protein histidine kinase activity
Turpa_1918	COG4999	Histidine kinase
Turpa_1922	COG2963	transposase activity
Turpa_1923	COG4585	Histidine kinase
Turpa_1924	COG2197	response regulator
Turpa_1927	COG1192	Involved in chromosome partitioning
Turpa_1929	COG0823	Involved in the tonB-independent uptake of proteins
Turpa_1934	COG1254	Belongs to the acylphosphatase family
Turpa_1937	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Turpa_1938	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Turpa_1939	COG1968	undecaprenyl-diphosphatase activity
Turpa_1941	COG4399	Belongs to the UPF0754 family
Turpa_1943	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Turpa_1945	COG1595	DNA-templated transcription, initiation
Turpa_1949	COG0183	Belongs to the thiolase family
Turpa_1952	COG0300	oxidoreductase activity
Turpa_1954	COG0772	Belongs to the SEDS family
Turpa_1956	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Turpa_1960	COG1022	Amp-dependent synthetase and ligase
Turpa_1972	COG1181	Belongs to the D-alanine--D-alanine ligase family
Turpa_1974	COG0656	L-ascorbic acid biosynthetic process
Turpa_1975	COG0531	amino acid
Turpa_1979	COG2759	Belongs to the formate--tetrahydrofolate ligase family
Turpa_1982	COG0038	chloride channel
Turpa_1987	COG0154	amidase activity
Turpa_1989	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_1995	COG1666	GTP binding
Turpa_1998	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Turpa_1999	COG0612	Peptidase, M16
Turpa_2001	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Turpa_2006	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
Turpa_2008	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Turpa_2009	COG0741	lytic transglycosylase activity
Turpa_2013	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Turpa_2032	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_2034	COG0277	FAD linked oxidase domain protein
Turpa_2036	COG0859	PFAM glycosyl transferase family 9
Turpa_2037	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Turpa_2039	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Turpa_2043	COG0217	transcriptional regulatory protein
Turpa_2046	COG0442	prolyl-tRNA aminoacylation
Turpa_2050	COG0121	glutamine amidotransferase
Turpa_2051	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_2051	COG2972	Histidine kinase
Turpa_2052	COG2967	ApaG domain
Turpa_2055	COG0768	penicillin binding
Turpa_2056	COG0772	Belongs to the SEDS family
Turpa_2059	COG0456	acetyltransferase
Turpa_2062	COG0534	Mate efflux family protein
Turpa_2064	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
Turpa_2065	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
Turpa_2068	COG0745	RESPONSE REGULATOR receiver
Turpa_2069	COG0488	(ABC) transporter
Turpa_2071	COG1480	7TM receptor with intracellular HD hydrolase
Turpa_2073	COG1639	'signal transduction protein
Turpa_2076	COG1703	isobutyryl-CoA mutase activity
Turpa_2076	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
Turpa_2076	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
Turpa_2077	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Turpa_2086	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_2087	COG0745	RESPONSE REGULATOR receiver
Turpa_2090	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Turpa_2091	COG4681	YaeQ
Turpa_2102	COG1612	heme a metabolic process
Turpa_2109	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Turpa_2113	COG0148	phosphopyruvate hydratase activity
Turpa_2115	COG0336	Belongs to the RNA methyltransferase TrmD family
Turpa_2116	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Turpa_2118	COG0228	four-way junction DNA binding
Turpa_2123	COG0596	Alpha beta hydrolase
Turpa_2125	COG1858	cytochrome C peroxidase
Turpa_2126	COG0646	methionine synthase
Turpa_2126	COG1410	methionine synthase
Turpa_2128	COG2137	regulation of response to DNA damage stimulus
Turpa_2136	COG1487	ribonuclease activity
Turpa_2138	COG2030	dehydratase
Turpa_2144	COG1024	Enoyl-CoA hydratase
Turpa_2149	COG0471	metal ion transport
Turpa_2152	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Turpa_2152	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
Turpa_2161	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Turpa_2166	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Turpa_2168	COG1091	dTDP-4-dehydrorhamnose reductase activity
Turpa_2172	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Turpa_2179	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Turpa_2180	COG0751	glycine-tRNA ligase activity
Turpa_2183	COG1070	Carbohydrate kinase
Turpa_2197	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Turpa_2198	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
Turpa_2198	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Turpa_2201	COG1435	thymidine kinase activity
Turpa_2204	COG0575	Belongs to the CDS family
Turpa_2208	COG1484	DNA-dependent DNA replication
Turpa_2209	COG1960	acyl-CoA dehydrogenase activity
Turpa_2211	COG0592	DNA-directed DNA polymerase activity
Turpa_2212	COG0101	tRNA pseudouridine synthase activity
Turpa_2229	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Turpa_2230	COG0149	triose-phosphate isomerase activity
Turpa_2231	COG0577	efflux transmembrane transporter activity
Turpa_2231	COG1136	(ABC) transporter
Turpa_2240	COG4608	Belongs to the ABC transporter superfamily
Turpa_2241	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Turpa_2244	COG1663	tetraacyldisaccharide 4'-kinase activity
Turpa_2247	COG1561	YicC-like family, N-terminal region
Turpa_2248	COG2052	Domain of unknown function (DUF370)
Turpa_2250	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Turpa_2252	COG0588	phosphoglycerate mutase activity
Turpa_2256	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
Turpa_2260	COG0268	Binds directly to 16S ribosomal RNA
Turpa_2263	COG1408	metallophosphoesterase
Turpa_2264	COG0542	response to heat
Turpa_2265	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Turpa_2269	COG1137	ATPase activity
Turpa_2271	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Turpa_2278	COG1309	transcriptional regulator
Turpa_2279	COG4941	Belongs to the sigma-70 factor family
Turpa_2280	COG3795	YCII-related domain
Turpa_2282	COG1741	Belongs to the pirin family
Turpa_2283	COG1196	nuclear chromosome segregation
Turpa_2283	COG0739	heme binding
Turpa_2283	COG0741	lytic transglycosylase activity
Turpa_2284	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Turpa_2296	COG2226	methyltransferase
Turpa_2308	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Turpa_2310	COG1104	cysteine desulfurase activity
Turpa_2315	COG0537	adenosine 5'-monophosphoramidase activity
Turpa_2321	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Turpa_2323	COG1136	(ABC) transporter
Turpa_2323	COG0577	efflux transmembrane transporter activity
Turpa_2328	COG2154	pterin-4-alpha-carbinolamine dehydratase
Turpa_2330	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Turpa_2332	COG0747	negative chemotaxis
Turpa_2336	COG1368	sulfuric ester hydrolase activity
Turpa_2339	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Turpa_2339	COG0028	Belongs to the TPP enzyme family
Turpa_2343	COG0446	pyridine nucleotide-disulphide oxidoreductase
Turpa_2346	COG0674	pyruvate-flavodoxin oxidoreductase activity
Turpa_2346	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Turpa_2347	COG1013	pyruvate-flavodoxin oxidoreductase activity
Turpa_2349	COG0418	dihydroorotase activity
Turpa_2350	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Turpa_2353	COG1366	Belongs to the anti-sigma-factor antagonist family
Turpa_2395	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Turpa_2397	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Turpa_2398	COG0305	Participates in initiation and elongation during chromosome replication
Turpa_2400	COG0739	heme binding
Turpa_2401	COG2890	protein-(glutamine-N5) methyltransferase activity
Turpa_2404	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Turpa_2408	COG2201	protein-glutamate methylesterase activity
Turpa_2411	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Turpa_2416	COG1012	belongs to the aldehyde dehydrogenase family
Turpa_2418	COG0824	Thioesterase
Turpa_2421	COG0438	transferase activity, transferring glycosyl groups
Turpa_2424	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
Turpa_2428	COG1454	alcohol dehydrogenase
Turpa_2434	COG1086	Polysaccharide biosynthesis protein
Turpa_2439	COG1233	COG1233 Phytoene dehydrogenase and related
Turpa_2442	COG0625	glutathione transferase activity
Turpa_2445	COG5001	Diguanylate cyclase
Turpa_2447	COG0356	it plays a direct role in the translocation of protons across the membrane
Turpa_2448	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Turpa_2454	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Turpa_2456	COG0586	Pfam SNARE associated Golgi protein
Turpa_2459	COG1988	membrane-bound metal-dependent
Turpa_2462	COG1522	sequence-specific DNA binding
Turpa_2465	COG0590	tRNA wobble adenosine to inosine editing
Turpa_2466	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Turpa_2469	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Turpa_2474	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Turpa_2478	COG0612	Peptidase, M16
Turpa_2480	COG2171	N-acyltransferase activity
Turpa_2483	COG0315	cyclic pyranopterin monophosphate synthase activity
Turpa_2483	COG0521	Mo-molybdopterin cofactor biosynthetic process
Turpa_2484	COG0303	'Molybdopterin
Turpa_2487	COG0314	molybdopterin synthase activity
Turpa_2488	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Turpa_2489	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Turpa_2494	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
Turpa_2504	COG1943	Transposase
Turpa_2507	COG1960	acyl-CoA dehydrogenase activity
Turpa_2510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Turpa_2512	COG0083	homoserine kinase activity
Turpa_2514	COG0123	including yeast histone deacetylase and acetoin utilization protein
Turpa_2516	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Turpa_2517	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Turpa_2520	COG0306	phosphate transporter
Turpa_2522	COG0513	Belongs to the DEAD box helicase family
Turpa_2525	COG0183	Belongs to the thiolase family
Turpa_2526	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Turpa_2527	COG2086	electron transfer activity
Turpa_2528	COG0640	Transcriptional regulator
Turpa_2529	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_2533	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
Turpa_2540	COG1706	bacterial-type flagellum-dependent cell motility
Turpa_2549	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
Turpa_2550	COG0088	Forms part of the polypeptide exit tunnel
Turpa_2551	COG0089	rRNA binding
Turpa_2553	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Turpa_2556	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Turpa_2557	COG0255	Belongs to the universal ribosomal protein uL29 family
Turpa_2558	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Turpa_2561	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Turpa_2562	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Turpa_2563	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Turpa_2565	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Turpa_2567	COG1841	ribosomal large subunit assembly
Turpa_2569	COG0201	protein transport
Turpa_2572	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Turpa_2573	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Turpa_2574	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Turpa_2575	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Turpa_2579	COG0736	holo-[acyl-carrier-protein] synthase activity
Turpa_2580	COG2255	four-way junction helicase activity
Turpa_2582	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Turpa_2589	COG1191	sigma factor activity
Turpa_2594	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
Turpa_2595	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Turpa_2597	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Turpa_2600	COG3002	Belongs to the UPF0753 family
Turpa_2601	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Turpa_2608	COG1765	OsmC-like protein
Turpa_2610	COG1494	fructose-1,6-bisphosphatase
Turpa_2613	COG4772	TonB-dependent receptor
Turpa_2618	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Turpa_2620	COG0300	oxidoreductase activity
Turpa_2621	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Turpa_2623	COG0195	Participates in both transcription termination and antitermination
Turpa_2627	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Turpa_2627	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Turpa_2628	COG2814	Major facilitator Superfamily
Turpa_2630	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Turpa_2631	COG2226	methyltransferase
Turpa_2634	COG2329	Antibiotic biosynthesis monooxygenase
Turpa_2636	COG0438	transferase activity, transferring glycosyl groups
Turpa_2640	COG0728	peptidoglycan biosynthetic process
Turpa_2642	COG0352	thiamine-phosphate diphosphorylase activity
Turpa_2650	COG0497	DNA recombination
Turpa_2654	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Turpa_2654	COG1776	CheC inhibitor of MCP methylation
Turpa_2657	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Turpa_2657	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Turpa_2659	COG2963	transposase activity
Turpa_2670	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Turpa_2671	COG0732	type I restriction modification DNA specificity domain
Turpa_2675	COG2801	Transposase and inactivated derivatives
Turpa_2677	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Turpa_2681	COG0546	phosphoglycolate phosphatase activity
Turpa_2686	COG1194	a g-specific adenine glycosylase
Turpa_2687	COG0402	S-adenosylhomocysteine deaminase activity
Turpa_2688	COG1127	ABC transporter
Turpa_2693	COG4221	oxidoreductase activity
Turpa_2698	COG0572	uridine kinase
Turpa_2700	COG3384	dioxygenase
Turpa_2704	COG0741	lytic transglycosylase activity
Turpa_2704	COG1196	nuclear chromosome segregation
Turpa_2704	COG0739	heme binding
Turpa_2706	COG2885	chlorophyll binding
Turpa_2708	COG0037	tRNA processing
Turpa_2709	COG0193	aminoacyl-tRNA hydrolase activity
Turpa_2710	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Turpa_2717	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_2719	COG3158	transport of potassium into the cell
Turpa_2720	COG3158	transport of potassium into the cell
Turpa_2721	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Turpa_2722	COG1024	Enoyl-CoA hydratase
Turpa_2729	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Turpa_2739	COG0460	homoserine dehydrogenase
Turpa_2740	COG0069	glutamate synthase activity
Turpa_2741	COG2264	protein methyltransferase activity
Turpa_2742	COG0113	porphobilinogen synthase activity
Turpa_2743	COG0739	heme binding
Turpa_2744	COG0544	peptidyl-prolyl cis-trans isomerase activity
Turpa_2751	COG3040	lipid binding
Turpa_2753	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_2754	COG0596	Alpha beta hydrolase
Turpa_2755	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_2761	COG1960	acyl-CoA dehydrogenase activity
Turpa_2767	COG0183	Belongs to the thiolase family
Turpa_2770	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Turpa_2772	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Turpa_2773	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Turpa_2777	COG0508	dehydrogenase complex catalyzes the overall conversion of
Turpa_2779	COG4221	oxidoreductase activity
Turpa_2784	COG0628	permease
Turpa_2786	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Turpa_2790	COG0752	glycyl-tRNA synthetase alpha subunit
Turpa_2796	COG0739	heme binding
Turpa_2797	COG4974	Belongs to the 'phage' integrase family
Turpa_2798	COG0358	DNA primase activity
Turpa_2807	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Turpa_2809	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Turpa_2812	COG1136	(ABC) transporter
Turpa_2818	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Turpa_2824	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
Turpa_2825	COG0405	Gamma-glutamyltransferase
Turpa_2827	COG1678	Uncharacterized ACR, COG1678
Turpa_2829	COG0616	signal peptide processing
Turpa_2833	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Turpa_2841	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_2845	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Turpa_2851	COG0470	DNA polymerase III
Turpa_2852	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Turpa_2857	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Turpa_2862	COG1304	FMN binding
Turpa_2863	COG0095	Lipoate-protein ligase
Turpa_2864	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Turpa_2867	COG3123	guanosine phosphorylase activity
Turpa_2869	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Turpa_2874	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Turpa_2875	COG1199	ATP-dependent helicase activity
Turpa_2876	COG0328	RNA-DNA hybrid ribonuclease activity
Turpa_2877	COG0444	Belongs to the ABC transporter superfamily
Turpa_2879	COG0250	Participates in transcription elongation, termination and antitermination
Turpa_2887	COG0049	tRNA binding
Turpa_2888	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Turpa_2897	COG0784	Response regulator, receiver
Turpa_2897	COG2198	Histidine kinase
Turpa_2897	COG5002	protein histidine kinase activity
Turpa_2905	COG0802	atpase or kinase
Turpa_2907	COG0557	exoribonuclease II activity
Turpa_2912	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
Turpa_2914	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Turpa_2918	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Turpa_2919	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Turpa_2922	COG0037	tRNA processing
Turpa_2925	COG0564	pseudouridine synthase activity
Turpa_2926	COG0357	Ribosomal RNA small subunit methyltransferase G
Turpa_2926	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Turpa_2928	COG1012	belongs to the aldehyde dehydrogenase family
Turpa_2930	COG3063	Type IV pilus biogenesis stability protein PilW
Turpa_2933	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Turpa_2934	COG1024	Enoyl-CoA hydratase
Turpa_2935	COG0742	ribosomal rna small subunit methyltransferase
Turpa_2938	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Turpa_2944	COG0288	reversible hydration of carbon dioxide
Turpa_2947	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Turpa_2948	COG1803	Methylglyoxal synthase
Turpa_2950	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
Turpa_2957	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Turpa_2959	COG0509	glycine decarboxylation via glycine cleavage system
Turpa_2960	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_2962	COG0625	glutathione transferase activity
Turpa_2964	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Turpa_2965	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_2968	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Turpa_2969	COG0360	Binds together with S18 to 16S ribosomal RNA
Turpa_2970	COG0629	single-stranded DNA binding
Turpa_2973	COG0359	binds to the 23S rRNA
Turpa_2974	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Turpa_2978	COG0793	Belongs to the peptidase S41A family
Turpa_2981	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Turpa_2985	COG2843	Capsule synthesis protein
Turpa_2989	COG0372	Belongs to the citrate synthase family
Turpa_2990	COG0385	Bile acid
Turpa_2994	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Turpa_2996	COG1573	uracil-dna glycosylase
Turpa_3002	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Turpa_3004	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Turpa_3008	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Turpa_3008	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Turpa_3009	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Turpa_3010	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Turpa_3011	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Turpa_3016	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Turpa_3017	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Turpa_3019	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
Turpa_3020	COG0688	phosphatidylethanolamine metabolic process
Turpa_3024	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Turpa_3031	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Turpa_3047	COG0791	NLP P60 protein
Turpa_3047	COG1388	LysM domain
Turpa_3050	COG0194	GDP metabolic process
Turpa_3051	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Turpa_3059	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Turpa_3068	COG0745	RESPONSE REGULATOR receiver
Turpa_3071	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Turpa_3074	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Turpa_3078	COG0584	glycerophosphoryl diester phosphodiesterase
Turpa_3079	COG0166	Belongs to the GPI family
Turpa_3080	COG0596	Alpha beta hydrolase
Turpa_3081	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Turpa_3082	COG0560	Phosphoserine phosphatase
Turpa_3082	COG3830	Belongs to the UPF0237 family
Turpa_3086	COG0579	oxidoreductase
Turpa_3088	COG0733	neurotransmitter:sodium symporter activity
Turpa_3096	COG2828	Protein conserved in bacteria
Turpa_3097	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_3106	COG0129	dihydroxy-acid dehydratase activity
Turpa_3108	COG2096	Adenosyltransferase
Turpa_3117	COG0477	Major facilitator Superfamily
Turpa_3121	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
Turpa_3121	COG0517	IMP dehydrogenase activity
Turpa_3124	COG1216	Glycosyl transferase, family 2
Turpa_3124	COG0463	Glycosyl transferase, family 2
Turpa_3127	COG2814	Major facilitator Superfamily
Turpa_3129	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Turpa_3134	COG1368	sulfuric ester hydrolase activity
Turpa_3135	COG1472	Belongs to the glycosyl hydrolase 3 family
Turpa_3138	COG0066	3-isopropylmalate dehydratase activity
Turpa_3139	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Turpa_3140	COG0583	DNA-binding transcription factor activity
Turpa_3141	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Turpa_3144	COG0724	RNA recognition motif
Turpa_3153	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Turpa_3162	COG0436	Aminotransferase
Turpa_3172	COG0617	tRNA 3'-terminal CCA addition
Turpa_3174	COG2373	Large extracellular alpha-helical protein
Turpa_3178	COG1305	Transglutaminase-like
Turpa_3179	COG2308	Evidence 4 Homologs of previously reported genes of
Turpa_3181	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Turpa_3183	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Turpa_3192	COG0681	Belongs to the peptidase S26 family
Turpa_3195	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Turpa_3196	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_3197	COG0758	DNA mediated transformation
Turpa_3200	COG0307	riboflavin synthase, alpha
Turpa_3205	COG0437	4 iron, 4 sulfur cluster binding
Turpa_3210	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Turpa_3213	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Turpa_3213	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Turpa_3214	COG2193	ferroxidase activity
Turpa_3221	COG0210	DNA helicase
Turpa_3222	COG0189	ligase activity
Turpa_3224	COG1940	carbohydrate kinase activity
Turpa_3232	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Turpa_3234	COG0446	pyridine nucleotide-disulphide oxidoreductase
Turpa_3234	COG1902	pentaerythritol trinitrate reductase activity
Turpa_3238	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Turpa_3239	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
Turpa_3241	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
Turpa_3242	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
Turpa_3245	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Turpa_3246	COG2070	2-Nitropropane dioxygenase
Turpa_3247	COG0805	protein transport
Turpa_3251	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
Turpa_3254	COG2356	endonuclease I
Turpa_3260	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Turpa_3261	COG3706	GGDEF domain
Turpa_3263	COG4535	Mg2 and Co2 transporter CorC
Turpa_3267	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Turpa_3267	COG0140	phosphoribosyl-ATP diphosphatase activity
Turpa_3270	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Turpa_3271	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Turpa_3279	COG1073	alpha beta
Turpa_3281	COG0028	Belongs to the TPP enzyme family
Turpa_3284	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_3287	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Turpa_3291	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Turpa_3302	COG3385	transposase activity
Turpa_3307	COG1403	HNH endonuclease
Turpa_3329	COG3549	Plasmid maintenance system killer
Turpa_3346	COG2963	transposase activity
Turpa_3355	COG1715	Restriction endonuclease
Turpa_3372	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Turpa_3374	COG2226	methyltransferase
Turpa_3399	COG2963	transposase activity
Turpa_3406	COG2963	transposase activity
Turpa_3436	COG2963	transposase activity
Turpa_3440	COG2391	methyltransferase activity
Turpa_3441	COG2226	methyltransferase
Turpa_3442	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Turpa_3447	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Turpa_3471	COG2801	Transposase and inactivated derivatives
Turpa_3501	COG2963	transposase activity
Turpa_3522	COG2161	toxin-antitoxin pair type II binding
Turpa_3523	COG4115	mRNA cleavage
Turpa_3526	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
Turpa_3529	COG2963	transposase activity
Turpa_3534	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
Turpa_3536	COG1394	ATPase activity, coupled to movement of substances
Turpa_3537	COG1269	ATP hydrolysis coupled proton transport
Turpa_3540	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_3566	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Turpa_3571	COG2801	Transposase and inactivated derivatives
Turpa_3579	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Turpa_3603	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Turpa_3611	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Turpa_3615	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Turpa_3620	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Turpa_3622	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Turpa_3626	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
Turpa_3633	COG0617	tRNA 3'-terminal CCA addition
Turpa_3636	COG0791	NLP P60 protein
Turpa_3637	COG5002	protein histidine kinase activity
Turpa_3640	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Turpa_3640	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Turpa_3641	COG0739	heme binding
Turpa_3642	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Turpa_3649	COG2226	methyltransferase
Turpa_3652	COG1987	bacterial-type flagellum assembly
Turpa_3653	COG1684	flagellar biosynthetic protein fliR
Turpa_3655	COG1183	phosphatidylcholine synthase activity
Turpa_3657	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
Turpa_3660	COG1516	flagellar protein fliS
Turpa_3663	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Turpa_3665	COG0484	heat shock protein binding
Turpa_3669	COG1482	cell wall glycoprotein biosynthetic process
Turpa_3672	COG1131	(ABC) transporter
Turpa_3678	COG3959	Transketolase, thiamine diphosphate binding domain
Turpa_3692	COG4133	protoheme IX ABC transporter activity
Turpa_3696	COG1104	cysteine desulfurase activity
Turpa_3698	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
Turpa_3700	COG0156	8-amino-7-oxononanoate synthase activity
Turpa_3702	COG1022	Amp-dependent synthetase and ligase
Turpa_3704	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Turpa_3705	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Turpa_3707	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Turpa_3708	COG1309	transcriptional regulator
Turpa_3715	COG0488	(ABC) transporter
Turpa_3716	COG0312	modulator of DNA gyrase
Turpa_3723	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
Turpa_3727	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
Turpa_3728	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_3730	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Turpa_3731	COG4208	sulfate ABC transporter
Turpa_3733	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Turpa_3734	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Turpa_3736	COG1396	sequence-specific DNA binding
Turpa_3742	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Turpa_3743	COG2362	D-Aminopeptidase
Turpa_3747	COG0174	glutamine synthetase
Turpa_3751	COG3152	Membrane
Turpa_3753	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
Turpa_3754	COG3481	metal-dependent phosphohydrolase, HD sub domain
Turpa_3756	COG1024	Enoyl-CoA hydratase
Turpa_3758	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Turpa_3760	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Turpa_3760	COG0519	Catalyzes the synthesis of GMP from XMP
Turpa_3763	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Turpa_3767	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Turpa_3769	COG0463	Glycosyl transferase, family 2
Turpa_3771	COG0739	heme binding
Turpa_3783	COG1847	R3H domain protein
Turpa_3787	COG1862	Preprotein translocase
Turpa_3789	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Turpa_3790	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Turpa_3791	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Turpa_3792	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Turpa_3793	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Turpa_3794	COG0321	lipoyl(octanoyl) transferase activity
Turpa_3797	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Turpa_3799	COG0189	ligase activity
Turpa_3800	COG1131	(ABC) transporter
Turpa_3801	COG0842	Transport permease protein
Turpa_3802	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Turpa_3804	COG0175	sulfate reduction
Turpa_3806	COG2895	sulfate adenylyltransferase (ATP) activity
Turpa_3807	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Turpa_3807	COG1648	precorrin-2 dehydrogenase activity
Turpa_3808	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Turpa_3808	COG1648	precorrin-2 dehydrogenase activity
Turpa_3809	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Turpa_3815	COG1612	heme a metabolic process
Turpa_3815	COG0109	protoheme IX farnesyltransferase activity
Turpa_3827	COG4257	antibiotic catabolic process
Turpa_3831	COG0204	Acyl-transferase
Turpa_3836	COG2104	thiamine diphosphate biosynthetic process
Turpa_3838	COG0180	Tryptophanyl-tRNA synthetase
Turpa_3840	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Turpa_3841	COG0077	Prephenate dehydratase
Turpa_3841	COG1605	Chorismate mutase
Turpa_3843	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Turpa_3845	COG1501	Belongs to the glycosyl hydrolase 31 family
Turpa_3850	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Turpa_3852	COG0745	RESPONSE REGULATOR receiver
Turpa_3855	COG0745	RESPONSE REGULATOR receiver
Turpa_3856	COG0745	RESPONSE REGULATOR receiver
Turpa_3857	COG4585	Histidine kinase
Turpa_3858	COG4251	negative regulation of phosphorylation
Turpa_3859	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Turpa_3860	COG2201	protein-glutamate methylesterase activity
Turpa_3861	COG0840	transmembrane signaling receptor activity
Turpa_3862	COG0835	chemotaxis
Turpa_3863	COG2198	Histidine kinase
Turpa_3863	COG0643	Histidine kinase
Turpa_3866	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Turpa_3868	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Turpa_3871	COG2124	cytochrome p450
Turpa_3878	COG0811	peptide transport
Turpa_3884	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Turpa_3885	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
Turpa_3888	COG3359	exonuclease
Turpa_3890	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Turpa_3892	COG1028	Short-chain dehydrogenase reductase Sdr
Turpa_3897	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Turpa_3900	COG0004	ammonium transporteR
Turpa_3901	COG0347	Belongs to the P(II) protein family
Turpa_3902	COG0004	ammonium transporteR
Turpa_3903	COG0347	Belongs to the P(II) protein family
Turpa_3906	COG0196	riboflavin kinase activity
Turpa_3908	COG3118	belongs to the thioredoxin family
Turpa_3909	COG0739	heme binding
Turpa_3910	COG0287	Prephenate dehydrogenase
Turpa_3915	COG1215	transferase activity, transferring glycosyl groups
Turpa_3922	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Turpa_3925	COG1388	LysM domain
Turpa_3925	COG0860	N-Acetylmuramoyl-L-alanine amidase
Turpa_3926	COG2826	transposase and inactivated derivatives, IS30 family
Turpa_3929	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Turpa_3933	COG1960	acyl-CoA dehydrogenase activity
Turpa_3941	COG3706	GGDEF domain
Turpa_3944	COG0006	proline dipeptidase activity
Turpa_3945	COG0463	Glycosyl transferase, family 2
Turpa_3948	COG0564	pseudouridine synthase activity
Turpa_3950	COG1132	(ABC) transporter
Turpa_3953	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Turpa_3955	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Turpa_3962	COG1546	Belongs to the CinA family
Turpa_3962	COG1058	Belongs to the CinA family
Turpa_3963	COG2833	Protein of unknown function (DUF455)
Turpa_3965	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Turpa_3965	COG0515	serine threonine protein kinase
Turpa_3973	COG1131	(ABC) transporter
Turpa_3975	COG2877	3-deoxy-8-phosphooctulonate synthase activity
Turpa_3978	COG1024	Enoyl-CoA hydratase
Turpa_3978	COG1250	3-hydroxyacyl-CoA dehydrogenase
Turpa_3986	COG0107	imidazoleglycerol-phosphate synthase activity
Turpa_3988	COG0756	dUTP diphosphatase activity
Turpa_3989	COG0174	glutamine synthetase
Turpa_3990	COG4221	oxidoreductase activity
Turpa_3992	COG0598	Magnesium transport protein CorA
Turpa_3993	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Turpa_3994	COG1475	DNA binding
Turpa_3995	COG1192	Involved in chromosome partitioning
Turpa_3996	COG0357	Ribosomal RNA small subunit methyltransferase G
Turpa_4000	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Turpa_4005	COG1032	radical SAM domain protein
Turpa_4008	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Turpa_4009	COG1136	(ABC) transporter
Turpa_4009	COG0577	efflux transmembrane transporter activity
Turpa_4013	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
Turpa_4015	COG0237	dephospho-CoA kinase activity
Turpa_4016	COG1022	Amp-dependent synthetase and ligase
Turpa_4017	COG0004	ammonium transporteR
Turpa_4018	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Turpa_4019	COG1136	(ABC) transporter
Turpa_4021	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Turpa_4026	COG1157	protein secretion by the type III secretion system
Turpa_4027	COG1317	bacterial-type flagellum organization
Turpa_4037	COG2308	Evidence 4 Homologs of previously reported genes of
Turpa_4044	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Turpa_4045	COG1234	tRNA 3'-trailer cleavage
Turpa_4048	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Turpa_4049	COG1959	2 iron, 2 sulfur cluster binding
Turpa_4050	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Turpa_4054	COG2010	Cytochrome c
Turpa_4056	COG3278	Belongs to the heme-copper respiratory oxidase family
Turpa_4059	COG2088	sporulation resulting in formation of a cellular spore
Turpa_4064	COG4308	Limonene-1,2-epoxide hydrolase catalytic domain
Turpa_4065	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
Turpa_4067	COG0640	Transcriptional regulator
Turpa_4068	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Turpa_4070	COG0581	inorganic phosphate transmembrane transporter activity
Turpa_4071	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Turpa_4072	COG0704	Plays a role in the regulation of phosphate uptake
Turpa_4075	COG0438	transferase activity, transferring glycosyl groups
Turpa_4076	COG3958	Transketolase
Turpa_4091	COG1943	Transposase
Turpa_4096	COG2885	chlorophyll binding
Turpa_4096	COG3047	cAMP biosynthetic process
Turpa_4097	COG1201	RNA secondary structure unwinding
Turpa_4101	COG1136	(ABC) transporter
Turpa_4110	COG0546	phosphoglycolate phosphatase activity
Turpa_4113	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Turpa_4119	COG0768	penicillin binding
Turpa_4122	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Turpa_4124	COG0859	PFAM glycosyl transferase family 9
Turpa_4125	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
Turpa_4126	COG0181	hydroxymethylbilane synthase activity
Turpa_4127	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Turpa_4129	COG0745	RESPONSE REGULATOR receiver
Turpa_4130	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
Turpa_4132	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Turpa_4133	COG0138	bifunctional purine biosynthesis protein purh
Turpa_4139	COG0861	Integral membrane protein TerC family
Turpa_4141	COG0012	GTP binding
Turpa_4151	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
Turpa_4152	COG1024	Enoyl-CoA hydratase
Turpa_4154	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Turpa_4154	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Turpa_4155	COG0616	signal peptide processing
Turpa_4157	COG0372	Belongs to the citrate synthase family
Turpa_4158	COG0792	nuclease activity
Turpa_4160	COG0719	Fe-S assembly protein
Turpa_4161	COG0396	ATPase activity
Turpa_4162	COG0719	Fe-S assembly protein
Turpa_4163	COG2151	metal-sulfur cluster biosynthetic enzyme
Turpa_4168	COG2201	protein-glutamate methylesterase activity
Turpa_R0043	COG2826	transposase and inactivated derivatives, IS30 family