locus-tag class description EJN92_00040 PF16491 CAAX prenyl protease N-terminal, five membrane helices EJN92_00040 PF01435 Peptidase family M48 EJN92_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00075 PF00072 Response regulator receiver domain EJN92_00075 PF09308 LuxQ, periplasmic EJN92_00075 PF00512 His Kinase A (phospho-acceptor) domain EJN92_00090 PF00375 Sodium:dicarboxylate symporter family EJN92_00115 PF08267 Cobalamin-independent synthase, N-terminal domain EJN92_00115 PF01717 Cobalamin-independent synthase, Catalytic domain EJN92_00120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_00120 PF03466 LysR substrate binding domain EJN92_00125 PF03737 Aldolase/RraA EJN92_00140 PF13188 PAS domain EJN92_00140 PF03707 Bacterial signalling protein N terminal repeat EJN92_00140 PF00990 Diguanylate cyclase, GGDEF domain EJN92_00140 PF00563 EAL domain EJN92_00145 PF02203 Tar ligand binding domain homologue EJN92_00145 PF00672 HAMP domain EJN92_00145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_00150 PF17871 AAA lid domain EJN92_00150 PF02861 Clp amino terminal domain, pathogenicity island component EJN92_00150 PF10431 C-terminal, D2-small domain, of ClpB protein EJN92_00150 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_00150 PF07724 AAA domain (Cdc48 subfamily) EJN92_00155 PF00561 alpha/beta hydrolase fold EJN92_00160 PF02391 MoaE protein EJN92_00170 PF03453 MoeA N-terminal region (domain I and II) EJN92_00170 PF00994 Probable molybdopterin binding domain EJN92_00170 PF03454 MoeA C-terminal region (domain IV) EJN92_00190 PF00919 Uncharacterized protein family UPF0004 EJN92_00190 PF18693 TRAM domain EJN92_00190 PF04055 Radical SAM superfamily EJN92_00195 PF05233 PHB accumulation regulatory domain EJN92_00195 PF07879 PHB/PHA accumulation regulator DNA-binding domain EJN92_00200 PF00106 short chain dehydrogenase EJN92_00205 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EJN92_00220 PF01479 S4 domain EJN92_00220 PF00849 RNA pseudouridylate synthase EJN92_00225 PF13525 Outer membrane lipoprotein EJN92_00230 PF03883 Peroxide stress protein YaaA EJN92_00240 PF04344 Chemotaxis phosphatase, CheZ EJN92_00245 PF07194 P2 response regulator binding domain EJN92_00245 PF01627 Hpt domain EJN92_00245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00245 PF02895 Signal transducing histidine kinase, homodimeric domain EJN92_00245 PF01584 CheW-like domain EJN92_00250 PF01641 SelR domain EJN92_00255 PF04279 Intracellular septation protein A EJN92_00260 PF01722 BolA-like protein EJN92_00290 PF00226 DnaJ domain EJN92_00290 PF01556 DnaJ C terminal domain EJN92_00290 PF00684 DnaJ central domain EJN92_00295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_00300 PF01431 Peptidase family M13 EJN92_00300 PF05649 Peptidase family M13 EJN92_00305 PF13307 Helicase C-terminal domain EJN92_00305 PF06733 DEAD_2 EJN92_00320 PF14497 Glutathione S-transferase, C-terminal domain EJN92_00320 PF13417 Glutathione S-transferase, N-terminal domain EJN92_00330 PF00588 SpoU rRNA Methylase family EJN92_00335 PF00459 Inositol monophosphatase family EJN92_00340 PF00271 Helicase conserved C-terminal domain EJN92_00340 PF00270 DEAD/DEAH box helicase EJN92_00345 PF00072 Response regulator receiver domain EJN92_00345 PF04397 LytTr DNA-binding domain EJN92_00350 PF06580 Histidine kinase EJN92_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00350 PF00672 HAMP domain EJN92_00350 PF02743 Cache domain EJN92_00355 PF05192 MutS domain III EJN92_00355 PF00488 MutS domain V EJN92_00355 PF05188 MutS domain II EJN92_00355 PF01624 MutS domain I EJN92_00355 PF05190 MutS family domain IV EJN92_00360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_00365 PF08007 Cupin superfamily protein EJN92_00380 PF00072 Response regulator receiver domain EJN92_00385 PF01339 CheB methylesterase EJN92_00385 PF00072 Response regulator receiver domain EJN92_00390 PF03975 CheD chemotactic sensory transduction EJN92_00395 PF03705 CheR methyltransferase, all-alpha domain EJN92_00395 PF01739 CheR methyltransferase, SAM binding domain EJN92_00400 PF02203 Tar ligand binding domain homologue EJN92_00400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_00400 PF00672 HAMP domain EJN92_00405 PF01584 CheW-like domain EJN92_00410 PF01584 CheW-like domain EJN92_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00410 PF01627 Hpt domain EJN92_00410 PF02895 Signal transducing histidine kinase, homodimeric domain EJN92_00410 PF09078 CheY binding EJN92_00415 PF00072 Response regulator receiver domain EJN92_00425 PF13677 Membrane MotB of proton-channel complex MotA/MotB EJN92_00425 PF00691 OmpA family EJN92_00430 PF01618 MotA/TolQ/ExbB proton channel family EJN92_00440 PF05280 Flagellar transcriptional activator (FlhC) EJN92_00445 PF05247 Flagellar transcriptional activator (FlhD) EJN92_00450 PF00929 Exonuclease EJN92_00455 PF01171 PP-loop family EJN92_00455 PF11734 TilS substrate C-terminal domain EJN92_00455 PF09179 TilS substrate binding domain EJN92_00460 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EJN92_00480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EJN92_00485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EJN92_00490 PF00149 Calcineurin-like phosphoesterase EJN92_00495 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_00500 PF08032 RNA 2'-O ribose methyltransferase substrate binding EJN92_00500 PF00588 SpoU rRNA Methylase family EJN92_00505 PF00773 RNB domain EJN92_00505 PF08206 Ribonuclease B OB domain EJN92_00505 PF08461 Ribonuclease R winged-helix domain EJN92_00505 PF17876 Cold shock domain EJN92_00505 PF00575 S1 RNA binding domain EJN92_00520 PF00156 Phosphoribosyl transferase domain EJN92_00525 PF00709 Adenylosuccinate synthetase EJN92_00530 PF13393 Histidyl-tRNA synthetase EJN92_00535 PF01145 SPFH domain / Band 7 family EJN92_00540 PF01145 SPFH domain / Band 7 family EJN92_00540 PF12221 Bacterial membrane protein N terminal EJN92_00545 PF01926 50S ribosome-binding GTPase EJN92_00545 PF13167 GTP-binding GTPase N-terminal EJN92_00545 PF16360 GTP-binding GTPase Middle Region EJN92_00550 PF17209 Hfq protein EJN92_00555 PF01926 50S ribosome-binding GTPase EJN92_00555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EJN92_00560 PF13360 PQQ-like domain EJN92_00565 PF09976 Tetratricopeptide repeat-like domain EJN92_00570 PF03129 Anticodon binding domain EJN92_00570 PF13393 Histidyl-tRNA synthetase EJN92_00575 PF04551 GcpE protein EJN92_00580 PF13464 Domain of unknown function (DUF4115) EJN92_00590 PF04055 Radical SAM superfamily EJN92_00595 PF00334 Nucleoside diphosphate kinase EJN92_00620 PF03466 LysR substrate binding domain EJN92_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_00630 PF00672 HAMP domain EJN92_00630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_00630 PF02203 Tar ligand binding domain homologue EJN92_00640 PF00005 ABC transporter EJN92_00640 PF00664 ABC transporter transmembrane region EJN92_00645 PF08443 RimK-like ATP-grasp domain EJN92_00645 PF08245 Mur ligase middle domain EJN92_00645 PF02875 Mur ligase family, glutamate ligase domain EJN92_00650 PF08245 Mur ligase middle domain EJN92_00650 PF02875 Mur ligase family, glutamate ligase domain EJN92_00650 PF08443 RimK-like ATP-grasp domain EJN92_00665 PF01965 DJ-1/PfpI family EJN92_00670 PF00581 Rhodanese-like domain EJN92_00690 PF00563 EAL domain EJN92_00690 PF00990 Diguanylate cyclase, GGDEF domain EJN92_00690 PF03707 Bacterial signalling protein N terminal repeat EJN92_00695 PF01810 LysE type translocator EJN92_00700 PF02743 Cache domain EJN92_00700 PF00672 HAMP domain EJN92_00700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_00710 PF17092 Penicillin-binding protein OB-like domain EJN92_00710 PF00912 Transglycosylase EJN92_00710 PF00905 Penicillin binding protein transpeptidase domain EJN92_00720 PF00893 Small Multidrug Resistance protein EJN92_00730 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain EJN92_00730 PF00207 Alpha-2-macroglobulin family EJN92_00730 PF07703 Alpha-2-macroglobulin bait region domain EJN92_00730 PF01835 MG2 domain EJN92_00735 PF07690 Major Facilitator Superfamily EJN92_00740 PF00027 Cyclic nucleotide-binding domain EJN92_00740 PF00520 Ion transport protein EJN92_00760 PF00990 Diguanylate cyclase, GGDEF domain EJN92_00760 PF08448 PAS fold EJN92_00765 PF00267 Gram-negative porin EJN92_00780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_00795 PF00512 His Kinase A (phospho-acceptor) domain EJN92_00795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00800 PF13407 Periplasmic binding protein domain EJN92_00815 PF09619 Type III secretion system lipoprotein chaperone (YscW) EJN92_00820 PF07969 Amidohydrolase family EJN92_00835 PF02333 Phytase EJN92_00845 PF00072 Response regulator receiver domain EJN92_00845 PF00990 Diguanylate cyclase, GGDEF domain EJN92_00850 PF12833 Helix-turn-helix domain EJN92_00850 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EJN92_00865 PF02705 K+ potassium transporter EJN92_00880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EJN92_00880 PF14572 Phosphoribosyl synthetase-associated domain EJN92_00885 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EJN92_00900 PF00072 Response regulator receiver domain EJN92_00900 PF00486 Transcriptional regulatory protein, C terminal EJN92_00905 PF13492 GAF domain EJN92_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_00905 PF00512 His Kinase A (phospho-acceptor) domain EJN92_00905 PF02702 Osmosensitive K+ channel His kinase sensor domain EJN92_00905 PF13493 Domain of unknown function (DUF4118) EJN92_00910 PF03006 Haemolysin-III related EJN92_00920 PF00563 EAL domain EJN92_00920 PF08668 HDOD domain EJN92_00925 PF01323 DSBA-like thioredoxin domain EJN92_00930 PF00563 EAL domain EJN92_00930 PF00990 Diguanylate cyclase, GGDEF domain EJN92_00930 PF03707 Bacterial signalling protein N terminal repeat EJN92_00945 PF12706 Beta-lactamase superfamily domain EJN92_00955 PF08281 Sigma-70, region 4 EJN92_00955 PF04542 Sigma-70 region 2 EJN92_00960 PF00440 Bacterial regulatory proteins, tetR family EJN92_00965 PF03109 ABC1 family EJN92_00990 PF08279 HTH domain EJN92_00990 PF13280 WYL domain EJN92_00995 PF13411 MerR HTH family regulatory protein EJN92_01010 PF00583 Acetyltransferase (GNAT) family EJN92_01020 PF02371 Transposase IS116/IS110/IS902 family EJN92_01020 PF01548 Transposase EJN92_01035 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_01035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EJN92_01040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EJN92_01040 PF02817 e3 binding domain EJN92_01040 PF00364 Biotin-requiring enzyme EJN92_01045 PF00456 Transketolase, thiamine diphosphate binding domain EJN92_01045 PF17831 Pyruvate dehydrogenase E1 component middle domain EJN92_01050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EJN92_01050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EJN92_01055 PF01432 Peptidase family M3 EJN92_01075 PF01266 FAD dependent oxidoreductase EJN92_01105 PF01066 CDP-alcohol phosphatidyltransferase EJN92_01110 PF08459 UvrC Helix-hairpin-helix N-terminal EJN92_01110 PF01541 GIY-YIG catalytic domain EJN92_01110 PF02151 UvrB/uvrC motif EJN92_01115 PF01648 4'-phosphopantetheinyl transferase superfamily EJN92_01120 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EJN92_01125 PF02565 Recombination protein O C terminal EJN92_01125 PF11967 Recombination protein O N terminal EJN92_01130 PF01926 50S ribosome-binding GTPase EJN92_01130 PF07650 KH domain EJN92_01135 PF14622 Ribonuclease-III-like EJN92_01135 PF00035 Double-stranded RNA binding motif EJN92_01145 PF10502 Signal peptidase, peptidase S26 EJN92_01150 PF00009 Elongation factor Tu GTP binding domain EJN92_01150 PF03144 Elongation factor Tu domain 2 EJN92_01150 PF00679 Elongation factor G C-terminus EJN92_01150 PF06421 GTP-binding protein LepA C-terminus EJN92_01155 PF01416 tRNA pseudouridine synthase EJN92_01165 PF01118 Semialdehyde dehydrogenase, NAD binding domain EJN92_01165 PF02774 Semialdehyde dehydrogenase, dimerisation domain EJN92_01175 PF00694 Aconitase C-terminal domain EJN92_01185 PF00330 Aconitase family (aconitate hydratase) EJN92_01190 PF01264 Chorismate synthase EJN92_01195 PF03707 Bacterial signalling protein N terminal repeat EJN92_01195 PF00990 Diguanylate cyclase, GGDEF domain EJN92_01195 PF00563 EAL domain EJN92_01205 PF00072 Response regulator receiver domain EJN92_01205 PF04397 LytTr DNA-binding domain EJN92_01210 PF01548 Transposase EJN92_01210 PF02371 Transposase IS116/IS110/IS902 family EJN92_01215 PF01384 Phosphate transporter family EJN92_01230 PF01281 Ribosomal protein L9, N-terminal domain EJN92_01230 PF03948 Ribosomal protein L9, C-terminal domain EJN92_01235 PF01084 Ribosomal protein S18 EJN92_01245 PF01250 Ribosomal protein S6 EJN92_01250 PF00717 Peptidase S24-like EJN92_01250 PF01726 LexA DNA binding domain EJN92_01255 PF02190 ATP-dependent protease La (LON) substrate-binding domain EJN92_01255 PF05362 Lon protease (S16) C-terminal proteolytic domain EJN92_01255 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_01260 PF07724 AAA domain (Cdc48 subfamily) EJN92_01260 PF06689 ClpX C4-type zinc finger EJN92_01260 PF10431 C-terminal, D2-small domain, of ClpB protein EJN92_01265 PF00574 Clp protease EJN92_01270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_01270 PF05697 Bacterial trigger factor protein (TF) EJN92_01270 PF05698 Bacterial trigger factor protein (TF) C-terminus EJN92_01280 PF00873 AcrB/AcrD/AcrF family EJN92_01285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_01340 PF00482 Type II secretion system (T2SS), protein F EJN92_01345 PF00437 Type II/IV secretion system protein EJN92_01350 PF00263 Bacterial type II and III secretion system protein EJN92_01350 PF03958 Bacterial type II/III secretion system short domain EJN92_01365 PF05134 Type II secretion system (T2SS), protein L EJN92_01365 PF12693 GspL periplasmic domain EJN92_01385 PF07963 Prokaryotic N-terminal methylation motif EJN92_01385 PF12019 Type II transport protein GspH EJN92_01390 PF07963 Prokaryotic N-terminal methylation motif EJN92_01390 PF08334 Type II secretion system (T2SS), protein G EJN92_01395 PF04389 Peptidase family M28 EJN92_01395 PF04151 Bacterial pre-peptidase C-terminal domain EJN92_01400 PF03413 Peptidase propeptide and YPEB domain EJN92_01400 PF01447 Thermolysin metallopeptidase, catalytic domain EJN92_01400 PF02868 Thermolysin metallopeptidase, alpha-helical domain EJN92_01400 PF07504 Fungalysin/Thermolysin Propeptide Motif EJN92_01405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EJN92_01415 PF01914 MarC family integral membrane protein EJN92_01420 PF02515 CoA-transferase family III EJN92_01425 PF13662 Toprim domain EJN92_01425 PF02132 RecR protein EJN92_01430 PF02575 YbaB/EbfC DNA-binding family EJN92_01435 PF12170 DNA polymerase III tau subunit V interacting with alpha EJN92_01435 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EJN92_01435 PF12169 DNA polymerase III subunits gamma and tau domain III EJN92_01445 PF00472 RF-1 domain EJN92_01450 PF03707 Bacterial signalling protein N terminal repeat EJN92_01450 PF00990 Diguanylate cyclase, GGDEF domain EJN92_01450 PF00563 EAL domain EJN92_01490 PF09587 Bacterial capsule synthesis protein PGA_cap EJN92_01500 PF13005 zinc-finger binding domain of transposase IS66 EJN92_01500 PF13007 Transposase C of IS166 homeodomain EJN92_01500 PF13817 IS66 C-terminal element EJN92_01500 PF03050 Transposase IS66 family EJN92_01515 PF02824 TGS domain EJN92_01515 PF04607 Region found in RelA / SpoT proteins EJN92_01515 PF13291 ACT domain EJN92_01520 PF01042 Endoribonuclease L-PSP EJN92_01530 PF00106 short chain dehydrogenase EJN92_01555 PF11855 Protein of unknown function (DUF3375) EJN92_01580 PF01144 Coenzyme A transferase EJN92_01585 PF01144 Coenzyme A transferase EJN92_01590 PF00072 Response regulator receiver domain EJN92_01590 PF00196 Bacterial regulatory proteins, luxR family EJN92_01610 PF00293 NUDIX domain EJN92_01620 PF00361 Proton-conducting membrane transporter EJN92_01625 PF00361 Proton-conducting membrane transporter EJN92_01625 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus EJN92_01630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EJN92_01630 PF00361 Proton-conducting membrane transporter EJN92_01635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EJN92_01640 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EJN92_01645 PF12838 4Fe-4S dicluster domain EJN92_01650 PF00146 NADH dehydrogenase EJN92_01655 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal EJN92_01655 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EJN92_01655 PF00384 Molybdopterin oxidoreductase EJN92_01660 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EJN92_01660 PF10531 SLBB domain EJN92_01660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EJN92_01670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EJN92_01675 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EJN92_01685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EJN92_01695 PF03840 Preprotein translocase SecG subunit EJN92_01700 PF00121 Triosephosphate isomerase EJN92_01705 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_01705 PF00107 Zinc-binding dehydrogenase EJN92_01710 PF01138 3' exoribonuclease family, domain 1 EJN92_01710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EJN92_01710 PF00013 KH domain EJN92_01710 PF03725 3' exoribonuclease family, domain 2 EJN92_01710 PF00575 S1 RNA binding domain EJN92_01715 PF00312 Ribosomal protein S15 EJN92_01720 PF08502 LeuA allosteric (dimerisation) domain EJN92_01720 PF00682 HMGL-like EJN92_01725 PF01066 CDP-alcohol phosphatidyltransferase EJN92_01730 PF16177 Acetyl-coenzyme A synthetase N-terminus EJN92_01730 PF13193 AMP-binding enzyme C-terminal domain EJN92_01730 PF00501 AMP-binding enzyme EJN92_01740 PF01177 Asp/Glu/Hydantoin racemase EJN92_01745 PF01063 Amino-transferase class IV EJN92_01750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_01750 PF00672 HAMP domain EJN92_01750 PF00072 Response regulator receiver domain EJN92_01750 PF01627 Hpt domain EJN92_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_01750 PF00512 His Kinase A (phospho-acceptor) domain EJN92_01770 PF00155 Aminotransferase class I and II EJN92_01790 PF03601 Conserved hypothetical protein 698 EJN92_01795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_01795 PF03466 LysR substrate binding domain EJN92_01850 PF00144 Beta-lactamase EJN92_01860 PF03707 Bacterial signalling protein N terminal repeat EJN92_01860 PF00563 EAL domain EJN92_01860 PF00990 Diguanylate cyclase, GGDEF domain EJN92_01875 PF00106 short chain dehydrogenase EJN92_01890 PF00561 alpha/beta hydrolase fold EJN92_01905 PF00892 EamA-like transporter family EJN92_01910 PF01810 LysE type translocator EJN92_01915 PF00106 short chain dehydrogenase EJN92_01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_01925 PF03466 LysR substrate binding domain EJN92_01930 PF02798 Glutathione S-transferase, N-terminal domain EJN92_01930 PF00043 Glutathione S-transferase, C-terminal domain EJN92_01935 PF01965 DJ-1/PfpI family EJN92_01940 PF07690 Major Facilitator Superfamily EJN92_01955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_01955 PF03466 LysR substrate binding domain EJN92_01970 PF13533 Biotin-lipoyl like EJN92_01975 PF00873 AcrB/AcrD/AcrF family EJN92_01980 PF02321 Outer membrane efflux protein EJN92_01990 PF02798 Glutathione S-transferase, N-terminal domain EJN92_01995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EJN92_01995 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_02025 PF02203 Tar ligand binding domain homologue EJN92_02025 PF00672 HAMP domain EJN92_02025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_02035 PF00196 Bacterial regulatory proteins, luxR family EJN92_02035 PF17874 MalT-like TPR region EJN92_02040 PF08447 PAS fold EJN92_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_02095 PF00561 alpha/beta hydrolase fold EJN92_02100 PF07690 Major Facilitator Superfamily EJN92_02110 PF03150 Di-haem cytochrome c peroxidase EJN92_02110 PF00034 Cytochrome c EJN92_02120 PF00563 EAL domain EJN92_02120 PF00990 Diguanylate cyclase, GGDEF domain EJN92_02120 PF03707 Bacterial signalling protein N terminal repeat EJN92_02130 PF07694 5TMR of 5TMR-LYT EJN92_02130 PF06580 Histidine kinase EJN92_02135 PF00072 Response regulator receiver domain EJN92_02135 PF04397 LytTr DNA-binding domain EJN92_02205 PF01207 Dihydrouridine synthase (Dus) EJN92_02220 PF00483 Nucleotidyl transferase EJN92_02220 PF01050 Mannose-6-phosphate isomerase EJN92_02225 PF00483 Nucleotidyl transferase EJN92_02235 PF16363 GDP-mannose 4,6 dehydratase EJN92_02240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EJN92_02240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EJN92_02240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EJN92_02245 PF03808 Glycosyl transferase WecB/TagA/CpsF family EJN92_02250 PF02350 UDP-N-acetylglucosamine 2-epimerase EJN92_02260 PF00534 Glycosyl transferases group 1 EJN92_02260 PF13439 Glycosyltransferase Family 4 EJN92_02270 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_02280 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_02285 PF00535 Glycosyl transferase family 2 EJN92_02295 PF14667 Polysaccharide biosynthesis C-terminal domain EJN92_02295 PF01943 Polysaccharide biosynthesis protein EJN92_02305 PF09721 Transmembrane exosortase (Exosortase_EpsH) EJN92_02320 PF02563 Polysaccharide biosynthesis/export protein EJN92_02320 PF10531 SLBB domain EJN92_02320 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EJN92_02330 PF02397 Bacterial sugar transferase EJN92_02355 PF00245 Alkaline phosphatase EJN92_02365 PF00176 SNF2 family N-terminal domain EJN92_02365 PF12419 SNF2 Helicase protein EJN92_02365 PF00271 Helicase conserved C-terminal domain EJN92_02400 PF00990 Diguanylate cyclase, GGDEF domain EJN92_02400 PF00072 Response regulator receiver domain EJN92_02415 PF00072 Response regulator receiver domain EJN92_02415 PF13188 PAS domain EJN92_02415 PF08448 PAS fold EJN92_02415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_02415 PF00512 His Kinase A (phospho-acceptor) domain EJN92_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_02420 PF00183 Hsp90 protein EJN92_02440 PF07885 Ion channel EJN92_02440 PF17655 Inward rectifier potassium channel C-terminal domain EJN92_02445 PF02130 Uncharacterized protein family UPF0054 EJN92_02450 PF02562 PhoH-like protein EJN92_02455 PF01938 TRAM domain EJN92_02455 PF00919 Uncharacterized protein family UPF0004 EJN92_02455 PF04055 Radical SAM superfamily EJN92_02465 PF01613 Flavin reductase like domain EJN92_02470 PF04193 PQ loop repeat EJN92_02475 PF03481 Putative GTP-binding controlling metal-binding EJN92_02475 PF01300 Telomere recombination EJN92_02480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EJN92_02480 PF02222 ATP-grasp domain EJN92_02485 PF00731 AIR carboxylase EJN92_02490 PF01259 SAICAR synthetase EJN92_02495 PF01116 Fructose-bisphosphate aldolase class-II EJN92_02500 PF02887 Pyruvate kinase, alpha/beta domain EJN92_02500 PF00224 Pyruvate kinase, barrel domain EJN92_02505 PF00162 Phosphoglycerate kinase EJN92_02530 PF00561 alpha/beta hydrolase fold EJN92_02540 PF01435 Peptidase family M48 EJN92_02540 PF13181 Tetratricopeptide repeat EJN92_02545 PF01967 MoaC family EJN92_02550 PF03707 Bacterial signalling protein N terminal repeat EJN92_02550 PF00990 Diguanylate cyclase, GGDEF domain EJN92_02550 PF00563 EAL domain EJN92_02560 PF11846 Virulence factor membrane-bound polymerase, C-terminal EJN92_02560 PF04932 O-Antigen ligase EJN92_02560 PF15864 Protein glycosylation ligase EJN92_02570 PF00114 Pilin (bacterial filament) EJN92_02570 PF07963 Prokaryotic N-terminal methylation motif EJN92_02575 PF00498 FHA domain EJN92_02575 PF03704 Bacterial transcriptional activator domain EJN92_02575 PF00486 Transcriptional regulatory protein, C terminal EJN92_02585 PF00549 CoA-ligase EJN92_02585 PF02629 CoA binding domain EJN92_02590 PF08442 ATP-grasp domain EJN92_02590 PF00549 CoA-ligase EJN92_02600 PF02631 RecX family EJN92_02605 PF00154 recA bacterial DNA recombination protein EJN92_02610 PF00923 Transaldolase/Fructose-6-phosphate aldolase EJN92_02615 PF00586 AIR synthase related protein, N-terminal domain EJN92_02615 PF02769 AIR synthase related protein, C-terminal domain EJN92_02620 PF00271 Helicase conserved C-terminal domain EJN92_02620 PF00270 DEAD/DEAH box helicase EJN92_02635 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_02640 PF00005 ABC transporter EJN92_02640 PF08402 TOBE domain EJN92_02650 PF02660 Glycerol-3-phosphate acyltransferase EJN92_02655 PF04073 Aminoacyl-tRNA editing domain EJN92_02660 PF03009 Glycerophosphoryl diester phosphodiesterase family EJN92_02665 PF02899 Phage integrase, N-terminal SAM-like domain EJN92_02665 PF00589 Phage integrase family EJN92_02675 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EJN92_02680 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EJN92_02685 PF03480 Bacterial extracellular solute-binding protein, family 7 EJN92_02690 PF00989 PAS fold EJN92_02690 PF00512 His Kinase A (phospho-acceptor) domain EJN92_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_02695 PF00196 Bacterial regulatory proteins, luxR family EJN92_02695 PF00072 Response regulator receiver domain EJN92_02725 PF05649 Peptidase family M13 EJN92_02725 PF01431 Peptidase family M13 EJN92_02730 PF00672 HAMP domain EJN92_02730 PF02203 Tar ligand binding domain homologue EJN92_02730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_02740 PF00072 Response regulator receiver domain EJN92_02740 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_02740 PF00512 His Kinase A (phospho-acceptor) domain EJN92_02745 PF01979 Amidohydrolase family EJN92_02755 PF07670 Nucleoside recognition EJN92_02775 PF00990 Diguanylate cyclase, GGDEF domain EJN92_02775 PF00072 Response regulator receiver domain EJN92_02790 PF00873 AcrB/AcrD/AcrF family EJN92_02795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_02810 PF05114 Protein of unknown function (DUF692) EJN92_02835 PF03205 Molybdopterin guanine dinucleotide synthesis protein B EJN92_02840 PF00311 Phosphoenolpyruvate carboxylase EJN92_02845 PF00342 Phosphoglucose isomerase EJN92_02850 PF01081 KDPG and KHG aldolase EJN92_02855 PF00920 Dehydratase family EJN92_02860 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EJN92_02860 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EJN92_02865 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EJN92_02870 PF01380 SIS domain EJN92_02870 PF01418 Helix-turn-helix domain, rpiR family EJN92_02900 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family EJN92_02905 PF01479 S4 domain EJN92_02905 PF00849 RNA pseudouridylate synthase EJN92_02910 PF00557 Metallopeptidase family M24 EJN92_02910 PF01321 Creatinase/Prolidase N-terminal domain EJN92_02915 PF00155 Aminotransferase class I and II EJN92_02925 PF00892 EamA-like transporter family EJN92_02930 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_02935 PF00155 Aminotransferase class I and II EJN92_02935 PF00392 Bacterial regulatory proteins, gntR family EJN92_02955 PF00069 Protein kinase domain EJN92_02965 PF07724 AAA domain (Cdc48 subfamily) EJN92_02965 PF17871 AAA lid domain EJN92_02965 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_02965 PF10431 C-terminal, D2-small domain, of ClpB protein EJN92_02965 PF02861 Clp amino terminal domain, pathogenicity island component EJN92_02980 PF08338 Domain of unknown function (DUF1731) EJN92_02980 PF01370 NAD dependent epimerase/dehydratase family EJN92_02995 PF00990 Diguanylate cyclase, GGDEF domain EJN92_03000 PF01406 tRNA synthetases class I (C) catalytic domain EJN92_03005 PF09157 Pseudouridine synthase II TruB, C-terminal EJN92_03005 PF16198 tRNA pseudouridylate synthase B C-terminal domain EJN92_03005 PF01509 TruB family pseudouridylate synthase (N terminal domain) EJN92_03010 PF02033 Ribosome-binding factor A EJN92_03015 PF11987 Translation-initiation factor 2 EJN92_03015 PF08364 Bacterial translation initiation factor IF-2 associated region EJN92_03015 PF04760 Translation initiation factor IF-2, N-terminal region EJN92_03015 PF00009 Elongation factor Tu GTP binding domain EJN92_03020 PF08529 NusA N-terminal domain EJN92_03020 PF13184 NusA-like KH domain EJN92_03025 PF17384 RimP C-terminal SH3 domain EJN92_03025 PF02576 RimP N-terminal domain EJN92_03030 PF01479 S4 domain EJN92_03030 PF00849 RNA pseudouridylate synthase EJN92_03035 PF04079 Segregation and condensation complex subunit ScpB EJN92_03045 PF00293 NUDIX domain EJN92_03050 PF00909 Ammonium Transporter Family EJN92_03055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EJN92_03060 PF04376 Arginine-tRNA-protein transferase, N terminus EJN92_03060 PF04377 Arginine-tRNA-protein transferase, C terminus EJN92_03065 PF01180 Dihydroorotate dehydrogenase EJN92_03070 PF00248 Aldo/keto reductase family EJN92_03075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EJN92_03100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EJN92_03115 PF01925 Sulfite exporter TauE/SafE EJN92_03120 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EJN92_03120 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EJN92_03130 PF01507 Phosphoadenosine phosphosulfate reductase family EJN92_03135 PF01507 Phosphoadenosine phosphosulfate reductase family EJN92_03140 PF00009 Elongation factor Tu GTP binding domain EJN92_03145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EJN92_03145 PF14824 Sirohaem biosynthesis protein central EJN92_03145 PF10414 Sirohaem synthase dimerisation region EJN92_03150 PF00672 HAMP domain EJN92_03150 PF18698 Histidine kinase sensor domain EJN92_03150 PF00512 His Kinase A (phospho-acceptor) domain EJN92_03150 PF00989 PAS fold EJN92_03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_03155 PF00158 Sigma-54 interaction domain EJN92_03155 PF00072 Response regulator receiver domain EJN92_03155 PF02954 Bacterial regulatory protein, Fis family EJN92_03160 PF12704 MacB-like periplasmic core domain EJN92_03160 PF02687 FtsX-like permease family EJN92_03160 PF00005 ABC transporter EJN92_03165 PF02687 FtsX-like permease family EJN92_03165 PF12704 MacB-like periplasmic core domain EJN92_03170 PF00005 ABC transporter EJN92_03175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_03185 PF03739 Lipopolysaccharide export system permease LptF/LptG EJN92_03190 PF03739 Lipopolysaccharide export system permease LptF/LptG EJN92_03195 PF02789 Cytosol aminopeptidase family, N-terminal domain EJN92_03195 PF00883 Cytosol aminopeptidase family, catalytic domain EJN92_03200 PF03372 Endonuclease/Exonuclease/phosphatase family EJN92_03210 PF16177 Acetyl-coenzyme A synthetase N-terminus EJN92_03210 PF00501 AMP-binding enzyme EJN92_03210 PF13193 AMP-binding enzyme C-terminal domain EJN92_03215 PF04303 PrpF protein EJN92_03220 PF00694 Aconitase C-terminal domain EJN92_03220 PF00330 Aconitase family (aconitate hydratase) EJN92_03225 PF00285 Citrate synthase, C-terminal domain EJN92_03235 PF00158 Sigma-54 interaction domain EJN92_03235 PF02954 Bacterial regulatory protein, Fis family EJN92_03235 PF06506 Propionate catabolism activator EJN92_03250 PF00563 EAL domain EJN92_03250 PF01590 GAF domain EJN92_03250 PF00990 Diguanylate cyclase, GGDEF domain EJN92_03250 PF00360 Phytochrome region EJN92_03255 PF00512 His Kinase A (phospho-acceptor) domain EJN92_03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_03265 PF03606 C4-dicarboxylate anaerobic carrier EJN92_03275 PF01380 SIS domain EJN92_03275 PF01418 Helix-turn-helix domain, rpiR family EJN92_03280 PF07715 TonB-dependent Receptor Plug Domain EJN92_03280 PF00593 TonB dependent receptor EJN92_03285 PF03575 Peptidase family S51 EJN92_03300 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family EJN92_03305 PF01515 Phosphate acetyl/butaryl transferase EJN92_03310 PF00871 Acetokinase family EJN92_03330 PF00924 Mechanosensitive ion channel EJN92_03330 PF05552 Conserved TM helix EJN92_03335 PF02347 Glycine cleavage system P-protein EJN92_03340 PF01597 Glycine cleavage H-protein EJN92_03355 PF00990 Diguanylate cyclase, GGDEF domain EJN92_03355 PF00072 Response regulator receiver domain EJN92_03360 PF01546 Peptidase family M20/M25/M40 EJN92_03360 PF07687 Peptidase dimerisation domain EJN92_03375 PF00072 Response regulator receiver domain EJN92_03405 PF08331 Domain of unknown function (DUF1730) EJN92_03410 PF01380 SIS domain EJN92_03410 PF01418 Helix-turn-helix domain, rpiR family EJN92_03410 PF02685 Glucokinase EJN92_03415 PF02685 Glucokinase EJN92_03420 PF17967 Pullulanase N2 domain EJN92_03420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EJN92_03420 PF18494 Pullulanase Ins domain EJN92_03420 PF03714 Bacterial pullanase-associated domain EJN92_03420 PF11852 Domain of unknown function (DUF3372) EJN92_03440 PF14461 Prokaryotic E2 family B EJN92_03440 PF00899 ThiF family EJN92_03450 PF00128 Alpha amylase, catalytic domain EJN92_03455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EJN92_03455 PF00356 Bacterial regulatory proteins, lacI family EJN92_03460 PF13802 Galactose mutarotase-like EJN92_03460 PF17137 Domain of unknown function (DUF5110) EJN92_03460 PF16338 Domain of unknown function (DUF4968) EJN92_03460 PF01055 Glycosyl hydrolases family 31 EJN92_03465 PF00128 Alpha amylase, catalytic domain EJN92_03480 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EJN92_03485 PF01520 N-acetylmuramoyl-L-alanine amidase EJN92_03485 PF11741 AMIN domain EJN92_03495 PF09335 SNARE associated Golgi protein EJN92_03500 PF01119 DNA mismatch repair protein, C-terminal domain EJN92_03500 PF08676 MutL C terminal dimerisation domain EJN92_03510 PF01464 Transglycosylase SLT domain EJN92_03520 PF02472 Biopolymer transport protein ExbD/TolR EJN92_03525 PF02472 Biopolymer transport protein ExbD/TolR EJN92_03530 PF01618 MotA/TolQ/ExbB proton channel family EJN92_03540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EJN92_03550 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_03555 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_03560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EJN92_03560 PF00005 ABC transporter EJN92_03590 PF00248 Aldo/keto reductase family EJN92_03600 PF00990 Diguanylate cyclase, GGDEF domain EJN92_03600 PF00563 EAL domain EJN92_03600 PF03707 Bacterial signalling protein N terminal repeat EJN92_03605 PF00474 Sodium:solute symporter family EJN92_03615 PF00512 His Kinase A (phospho-acceptor) domain EJN92_03615 PF08521 Two-component sensor kinase N-terminal EJN92_03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_03620 PF00486 Transcriptional regulatory protein, C terminal EJN92_03620 PF00072 Response regulator receiver domain EJN92_03655 PF00925 GTP cyclohydrolase II EJN92_03660 PF00920 Dehydratase family EJN92_03665 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EJN92_03670 PF01433 Peptidase family M1 domain EJN92_03670 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EJN92_03670 PF11940 Domain of unknown function (DUF3458) Ig-like fold EJN92_03685 PF00892 EamA-like transporter family EJN92_03690 PF01709 Transcriptional regulator EJN92_03695 PF02844 Phosphoribosylglycinamide synthetase, N domain EJN92_03695 PF02843 Phosphoribosylglycinamide synthetase, C domain EJN92_03695 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EJN92_03700 PF01218 Coproporphyrinogen III oxidase EJN92_03705 PF01467 Cytidylyltransferase-like EJN92_03715 PF02590 Predicted SPOUT methyltransferase EJN92_03720 PF02545 Maf-like protein EJN92_03725 PF10150 Ribonuclease E/G family EJN92_03725 PF00575 S1 RNA binding domain EJN92_03750 PF13005 zinc-finger binding domain of transposase IS66 EJN92_03750 PF03050 Transposase IS66 family EJN92_03750 PF13817 IS66 C-terminal element EJN92_03750 PF13007 Transposase C of IS166 homeodomain EJN92_03800 PF13007 Transposase C of IS166 homeodomain EJN92_03800 PF13005 zinc-finger binding domain of transposase IS66 EJN92_03800 PF03050 Transposase IS66 family EJN92_03800 PF13817 IS66 C-terminal element EJN92_03815 PF00589 Phage integrase family EJN92_03830 PF03050 Transposase IS66 family EJN92_03830 PF13005 zinc-finger binding domain of transposase IS66 EJN92_03830 PF13817 IS66 C-terminal element EJN92_03830 PF13007 Transposase C of IS166 homeodomain EJN92_03855 PF11867 Domain of unknown function (DUF3387) EJN92_03855 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EJN92_03855 PF18766 SWI2/SNF2 ATPase EJN92_03870 PF01420 Type I restriction modification DNA specificity domain EJN92_03875 PF12161 HsdM N-terminal domain EJN92_03875 PF02384 N-6 DNA Methylase EJN92_03900 PF13005 zinc-finger binding domain of transposase IS66 EJN92_03900 PF13007 Transposase C of IS166 homeodomain EJN92_03900 PF13817 IS66 C-terminal element EJN92_03900 PF03050 Transposase IS66 family EJN92_03910 PF01515 Phosphate acetyl/butaryl transferase EJN92_03920 PF00005 ABC transporter EJN92_03925 PF00005 ABC transporter EJN92_03930 PF13533 Biotin-lipoyl like EJN92_03940 PF00561 alpha/beta hydrolase fold EJN92_03940 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EJN92_03955 PF00005 ABC transporter EJN92_03955 PF00664 ABC transporter transmembrane region EJN92_03965 PF14579 Helix-hairpin-helix motif EJN92_03965 PF02811 PHP domain EJN92_03965 PF01336 OB-fold nucleic acid binding domain EJN92_03965 PF07733 Bacterial DNA polymerase III alpha NTPase domain EJN92_03965 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EJN92_03975 PF17954 Quercetinase C-terminal cupin domain EJN92_03975 PF02678 Pirin EJN92_03980 PF00271 Helicase conserved C-terminal domain EJN92_03980 PF00270 DEAD/DEAH box helicase EJN92_03990 PF04539 Sigma-70 region 3 EJN92_03990 PF04542 Sigma-70 region 2 EJN92_03990 PF00140 Sigma-70 factor, region 1.2 EJN92_03990 PF03979 Sigma-70 factor, region 1.1 EJN92_03990 PF04546 Sigma-70, non-essential region EJN92_03990 PF04545 Sigma-70, region 4 EJN92_03995 PF01807 CHC2 zinc finger EJN92_03995 PF10410 DnaB-helicase binding domain of primase EJN92_03995 PF08275 DNA primase catalytic core, N-terminal domain EJN92_03995 PF08278 DNA primase DnaG DnaB-binding EJN92_04005 PF01165 Ribosomal protein S21 EJN92_04025 PF07715 TonB-dependent Receptor Plug Domain EJN92_04025 PF00593 TonB dependent receptor EJN92_04035 PF17151 Periplasmic sensor domain EJN92_04035 PF00990 Diguanylate cyclase, GGDEF domain EJN92_04040 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase EJN92_04045 PF00854 POT family EJN92_04050 PF00873 AcrB/AcrD/AcrF family EJN92_04055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_04065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EJN92_04065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EJN92_04070 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EJN92_04070 PF01266 FAD dependent oxidoreductase EJN92_04075 PF01565 FAD binding domain EJN92_04075 PF02913 FAD linked oxidases, C-terminal domain EJN92_04085 PF00491 Arginase family EJN92_04090 PF03466 LysR substrate binding domain EJN92_04090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_04095 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EJN92_04095 PF12833 Helix-turn-helix domain EJN92_04115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EJN92_04115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EJN92_04125 PF00892 EamA-like transporter family EJN92_04140 PF07715 TonB-dependent Receptor Plug Domain EJN92_04140 PF00593 TonB dependent receptor EJN92_04150 PF00005 ABC transporter EJN92_04155 PF12704 MacB-like periplasmic core domain EJN92_04155 PF02687 FtsX-like permease family EJN92_04160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_04165 PF02321 Outer membrane efflux protein EJN92_04170 PF00581 Rhodanese-like domain EJN92_04180 PF00873 AcrB/AcrD/AcrF family EJN92_04190 PF17922 Tetracyclin repressor-like, C-terminal domain EJN92_04190 PF00440 Bacterial regulatory proteins, tetR family EJN92_04195 PF00512 His Kinase A (phospho-acceptor) domain EJN92_04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_04215 PF02374 Anion-transporting ATPase EJN92_04220 PF06953 Arsenical resistance operon trans-acting repressor ArsD EJN92_04230 PF01451 Low molecular weight phosphotyrosine protein phosphatase EJN92_04235 PF01758 Sodium Bile acid symporter family EJN92_04240 PF03358 NADPH-dependent FMN reductase EJN92_04260 PF00999 Sodium/hydrogen exchanger family EJN92_04265 PF00593 TonB dependent receptor EJN92_04265 PF07715 TonB-dependent Receptor Plug Domain EJN92_04280 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB EJN92_04280 PF08448 PAS fold EJN92_04280 PF00672 HAMP domain EJN92_04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_04280 PF00512 His Kinase A (phospho-acceptor) domain EJN92_04285 PF03692 Putative zinc- or iron-chelating domain EJN92_04295 PF00563 EAL domain EJN92_04295 PF00990 Diguanylate cyclase, GGDEF domain EJN92_04295 PF03707 Bacterial signalling protein N terminal repeat EJN92_04310 PF02673 Bacitracin resistance protein BacA EJN92_04315 PF00271 Helicase conserved C-terminal domain EJN92_04315 PF16124 RecQ zinc-binding EJN92_04315 PF00570 HRDC domain EJN92_04315 PF00270 DEAD/DEAH box helicase EJN92_04315 PF09382 RQC domain EJN92_04325 PF00176 SNF2 family N-terminal domain EJN92_04325 PF00271 Helicase conserved C-terminal domain EJN92_04325 PF12419 SNF2 Helicase protein EJN92_04330 PF02390 Putative methyltransferase EJN92_04340 PF00583 Acetyltransferase (GNAT) family EJN92_04350 PF03466 LysR substrate binding domain EJN92_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_04355 PF00990 Diguanylate cyclase, GGDEF domain EJN92_04355 PF03707 Bacterial signalling protein N terminal repeat EJN92_04355 PF00563 EAL domain EJN92_04360 PF00313 'Cold-shock' DNA-binding domain EJN92_04375 PF02091 Glycyl-tRNA synthetase alpha subunit EJN92_04380 PF05746 DALR anticodon binding domain EJN92_04380 PF02092 Glycyl-tRNA synthetase beta subunit EJN92_04400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EJN92_04405 PF00072 Response regulator receiver domain EJN92_04415 PF00512 His Kinase A (phospho-acceptor) domain EJN92_04415 PF00672 HAMP domain EJN92_04415 PF01627 Hpt domain EJN92_04415 PF00072 Response regulator receiver domain EJN92_04415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_04425 PF07969 Amidohydrolase family EJN92_04430 PF13416 Bacterial extracellular solute-binding protein EJN92_04445 PF00464 Serine hydroxymethyltransferase EJN92_04450 PF03477 ATP cone domain EJN92_04470 PF05567 Neisseria PilC beta-propeller domain EJN92_04475 PF14245 Type IV pilin PilA EJN92_04475 PF07963 Prokaryotic N-terminal methylation motif EJN92_04525 PF02954 Bacterial regulatory protein, Fis family EJN92_04525 PF00072 Response regulator receiver domain EJN92_04525 PF00158 Sigma-54 interaction domain EJN92_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_04530 PF00512 His Kinase A (phospho-acceptor) domain EJN92_04530 PF00989 PAS fold EJN92_04545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EJN92_04545 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EJN92_04545 PF10531 SLBB domain EJN92_04550 PF01568 Molydopterin dinucleotide binding domain EJN92_04550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EJN92_04550 PF00384 Molybdopterin oxidoreductase EJN92_04555 PF00593 TonB dependent receptor EJN92_04555 PF07715 TonB-dependent Receptor Plug Domain EJN92_04600 PF00005 ABC transporter EJN92_04605 PF00005 ABC transporter EJN92_04610 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_04615 PF00005 ABC transporter EJN92_04620 PF02560 Cyanate lyase C-terminal domain EJN92_04625 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_04625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EJN92_04630 PF01047 MarR family EJN92_04635 PF02566 OsmC-like protein EJN92_04655 PF00166 Chaperonin 10 Kd subunit EJN92_04660 PF00118 TCP-1/cpn60 chaperonin family EJN92_04670 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) EJN92_04675 PF00563 EAL domain EJN92_04675 PF00990 Diguanylate cyclase, GGDEF domain EJN92_04675 PF03707 Bacterial signalling protein N terminal repeat EJN92_04690 PF01330 RuvA N terminal domain EJN92_04690 PF07499 RuvA, C-terminal domain EJN92_04695 PF17864 RuvB AAA lid domain EJN92_04695 PF05491 RuvB C-terminal winged helix domain EJN92_04695 PF05496 Holliday junction DNA helicase RuvB P-loop domain EJN92_04700 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EJN92_04710 PF13609 Gram-negative porin EJN92_04715 PF13609 Gram-negative porin EJN92_04720 PF03232 Ubiquinone biosynthesis protein COQ7 EJN92_04730 PF00580 UvrD/REP helicase N-terminal domain EJN92_04730 PF13361 UvrD-like helicase C-terminal domain EJN92_04735 PF02581 Thiamine monophosphate synthase EJN92_04740 PF08543 Phosphomethylpyrimidine kinase EJN92_04745 PF05690 Thiazole biosynthesis protein ThiG EJN92_04755 PF13667 ThiC-associated domain EJN92_04755 PF01964 Radical SAM ThiC family EJN92_04760 PF00990 Diguanylate cyclase, GGDEF domain EJN92_04760 PF00072 Response regulator receiver domain EJN92_04765 PF10459 Peptidase S46 EJN92_04775 PF00171 Aldehyde dehydrogenase family EJN92_04780 PF00158 Sigma-54 interaction domain EJN92_04780 PF01590 GAF domain EJN92_04780 PF02954 Bacterial regulatory protein, Fis family EJN92_04785 PF03372 Endonuclease/Exonuclease/phosphatase family EJN92_04805 PF13488 Glycine zipper EJN92_04805 PF00691 OmpA family EJN92_04835 PF04397 LytTr DNA-binding domain EJN92_04835 PF00072 Response regulator receiver domain EJN92_04840 PF06580 Histidine kinase EJN92_04840 PF07694 5TMR of 5TMR-LYT EJN92_04840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_04845 PF12679 ABC-2 family transporter protein EJN92_04850 PF00005 ABC transporter EJN92_04860 PF00730 HhH-GPD superfamily base excision DNA repair protein EJN92_04860 PF00633 Helix-hairpin-helix motif EJN92_04860 PF10576 Iron-sulfur binding domain of endonuclease III EJN92_04860 PF14815 NUDIX domain EJN92_04865 PF00593 TonB dependent receptor EJN92_04865 PF07715 TonB-dependent Receptor Plug Domain EJN92_04875 PF02423 Ornithine cyclodeaminase/mu-crystallin family EJN92_04880 PF01321 Creatinase/Prolidase N-terminal domain EJN92_04880 PF00557 Metallopeptidase family M24 EJN92_04885 PF05544 Proline racemase EJN92_04890 PF08453 Peptidase family M9 N-terminal EJN92_04890 PF01752 Collagenase EJN92_04900 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EJN92_04900 PF06827 Zinc finger found in FPG and IleRS EJN92_04900 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EJN92_04915 PF00288 GHMP kinases N terminal domain EJN92_04915 PF08544 GHMP kinases C terminal EJN92_04925 PF14572 Phosphoribosyl synthetase-associated domain EJN92_04925 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EJN92_04930 PF01386 Ribosomal L25p family EJN92_04930 PF14693 Ribosomal protein TL5, C-terminal domain EJN92_04945 PF01757 Acyltransferase family EJN92_04955 PF13404 AsnC-type helix-turn-helix domain EJN92_04955 PF01037 Lrp/AsnC ligand binding domain EJN92_04960 PF01053 Cys/Met metabolism PLP-dependent enzyme EJN92_04975 PF00301 Rubredoxin EJN92_05000 PF02416 mttA/Hcf106 family EJN92_05015 PF07969 Amidohydrolase family EJN92_05020 PF00356 Bacterial regulatory proteins, lacI family EJN92_05025 PF02325 YGGT family EJN92_05035 PF00268 Ribonucleotide reductase, small chain EJN92_05040 PF00317 Ribonucleotide reductase, all-alpha domain EJN92_05040 PF02867 Ribonucleotide reductase, barrel domain EJN92_05040 PF03477 ATP cone domain EJN92_05045 PF01810 LysE type translocator EJN92_05050 PF12833 Helix-turn-helix domain EJN92_05050 PF12852 Cupin EJN92_05060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EJN92_05065 PF01738 Dienelactone hydrolase family EJN92_05070 PF03061 Thioesterase superfamily EJN92_05090 PF02219 Methylenetetrahydrofolate reductase EJN92_05095 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV EJN92_05100 PF05221 S-adenosyl-L-homocysteine hydrolase EJN92_05100 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EJN92_05105 PF00156 Phosphoribosyl transferase domain EJN92_05110 PF02080 TrkA-C domain EJN92_05110 PF02254 TrkA-N domain EJN92_05110 PF00999 Sodium/hydrogen exchanger family EJN92_05115 PF00571 CBS domain EJN92_05115 PF01380 SIS domain EJN92_05135 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_05135 PF00005 ABC transporter EJN92_05140 PF00309 Sigma-54 factor, Activator interacting domain (AID) EJN92_05140 PF04963 Sigma-54 factor, core binding domain EJN92_05140 PF04552 Sigma-54, DNA binding domain EJN92_05145 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EJN92_05150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EJN92_05150 PF00378 Enoyl-CoA hydratase/isomerase EJN92_05150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EJN92_05160 PF01966 HD domain EJN92_05160 PF13286 Phosphohydrolase-associated domain EJN92_05165 PF01761 3-dehydroquinate synthase EJN92_05175 PF07660 Secretin and TonB N terminus short domain EJN92_05175 PF03958 Bacterial type II/III secretion system short domain EJN92_05175 PF00263 Bacterial type II and III secretion system protein EJN92_05175 PF11741 AMIN domain EJN92_05200 PF17092 Penicillin-binding protein OB-like domain EJN92_05200 PF00912 Transglycosylase EJN92_05200 PF00905 Penicillin binding protein transpeptidase domain EJN92_05205 PF01491 Frataxin-like domain EJN92_05215 PF01794 Ferric reductase like transmembrane component EJN92_05220 PF00174 Oxidoreductase molybdopterin binding domain EJN92_05225 PF00905 Penicillin binding protein transpeptidase domain EJN92_05225 PF17092 Penicillin-binding protein OB-like domain EJN92_05225 PF00912 Transglycosylase EJN92_05230 PF00005 ABC transporter EJN92_05230 PF00664 ABC transporter transmembrane region EJN92_05235 PF00005 ABC transporter EJN92_05235 PF00664 ABC transporter transmembrane region EJN92_05240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EJN92_05240 PF00326 Prolyl oligopeptidase family EJN92_05245 PF13411 MerR HTH family regulatory protein EJN92_05260 PF00438 S-adenosylmethionine synthetase, N-terminal domain EJN92_05260 PF02772 S-adenosylmethionine synthetase, central domain EJN92_05260 PF02773 S-adenosylmethionine synthetase, C-terminal domain EJN92_05270 PF03279 Bacterial lipid A biosynthesis acyltransferase EJN92_05280 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EJN92_05285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EJN92_05290 PF01037 Lrp/AsnC ligand binding domain EJN92_05290 PF13404 AsnC-type helix-turn-helix domain EJN92_05310 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EJN92_05310 PF01694 Rhomboid family EJN92_05320 PF01431 Peptidase family M13 EJN92_05320 PF05649 Peptidase family M13 EJN92_05330 PF01037 Lrp/AsnC ligand binding domain EJN92_05335 PF00440 Bacterial regulatory proteins, tetR family EJN92_05335 PF08362 YcdC-like protein, C-terminal region EJN92_05340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EJN92_05340 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_05345 PF01180 Dihydroorotate dehydrogenase EJN92_05350 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EJN92_05355 PF01979 Amidohydrolase family EJN92_05360 PF01546 Peptidase family M20/M25/M40 EJN92_05360 PF07687 Peptidase dimerisation domain EJN92_05370 PF02798 Glutathione S-transferase, N-terminal domain EJN92_05370 PF14497 Glutathione S-transferase, C-terminal domain EJN92_05380 PF01810 LysE type translocator EJN92_05385 PF12833 Helix-turn-helix domain EJN92_05390 PF11862 Domain of unknown function (DUF3382) EJN92_05390 PF02653 Branched-chain amino acid transport system / permease component EJN92_05400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_05400 PF00512 His Kinase A (phospho-acceptor) domain EJN92_05400 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_05405 PF05544 Proline racemase EJN92_05410 PF01266 FAD dependent oxidoreductase EJN92_05420 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_05420 PF04324 BFD-like [2Fe-2S] binding domain EJN92_05425 PF00437 Type II/IV secretion system protein EJN92_05440 PF00437 Type II/IV secretion system protein EJN92_05450 PF00701 Dihydrodipicolinate synthetase family EJN92_05455 PF00171 Aldehyde dehydrogenase family EJN92_05460 PF00392 Bacterial regulatory proteins, gntR family EJN92_05460 PF07729 FCD domain EJN92_05470 PF01926 50S ribosome-binding GTPase EJN92_05480 PF13401 AAA domain EJN92_05480 PF01471 Putative peptidoglycan binding domain EJN92_05485 PF00263 Bacterial type II and III secretion system protein EJN92_05485 PF03958 Bacterial type II/III secretion system short domain EJN92_05535 PF08334 Type II secretion system (T2SS), protein G EJN92_05535 PF07963 Prokaryotic N-terminal methylation motif EJN92_05540 PF00114 Pilin (bacterial filament) EJN92_05540 PF07963 Prokaryotic N-terminal methylation motif EJN92_05545 PF00482 Type II secretion system (T2SS), protein F EJN92_05555 PF00850 Histone deacetylase domain EJN92_05560 PF07726 ATPase family associated with various cellular activities (AAA) EJN92_05560 PF17863 AAA lid domain EJN92_05570 PF13559 Domain of unknown function (DUF4129) EJN92_05570 PF11992 Domain of unknown function (DUF3488) EJN92_05570 PF01841 Transglutaminase-like superfamily EJN92_05575 PF13406 Transglycosylase SLT domain EJN92_05585 PF00376 MerR family regulatory protein EJN92_05585 PF09278 MerR, DNA binding EJN92_05595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_05600 PF00873 AcrB/AcrD/AcrF family EJN92_05605 PF02321 Outer membrane efflux protein EJN92_05610 PF00149 Calcineurin-like phosphoesterase EJN92_05620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_05620 PF03466 LysR substrate binding domain EJN92_05625 PF00892 EamA-like transporter family EJN92_05650 PF00899 ThiF family EJN92_05660 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EJN92_05660 PF01243 Pyridoxamine 5'-phosphate oxidase EJN92_05665 PF01625 Peptide methionine sulfoxide reductase EJN92_05675 PF01625 Peptide methionine sulfoxide reductase EJN92_05705 PF07963 Prokaryotic N-terminal methylation motif EJN92_05705 PF00114 Pilin (bacterial filament) EJN92_05710 PF13183 4Fe-4S dicluster domain EJN92_05710 PF02754 Cysteine-rich domain EJN92_05715 PF01565 FAD binding domain EJN92_05720 PF02913 FAD linked oxidases, C-terminal domain EJN92_05720 PF01565 FAD binding domain EJN92_05725 PF01521 Iron-sulphur cluster biosynthesis EJN92_05740 PF02774 Semialdehyde dehydrogenase, dimerisation domain EJN92_05740 PF01118 Semialdehyde dehydrogenase, NAD binding domain EJN92_05745 PF00380 Ribosomal protein S9/S16 EJN92_05750 PF00572 Ribosomal protein L13 EJN92_05755 PF02566 OsmC-like protein EJN92_05765 PF01636 Phosphotransferase enzyme family EJN92_05775 PF03641 Possible lysine decarboxylase EJN92_05780 PF01612 3'-5' exonuclease EJN92_05780 PF00476 DNA polymerase family A EJN92_05780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EJN92_05780 PF01367 5'-3' exonuclease, C-terminal SAM fold EJN92_05785 PF01578 Cytochrome C assembly protein EJN92_05790 PF05140 ResB-like family EJN92_05795 PF00034 Cytochrome c EJN92_05800 PF01926 50S ribosome-binding GTPase EJN92_05805 PF00490 Delta-aminolevulinic acid dehydratase EJN92_05810 PF04116 Fatty acid hydroxylase superfamily EJN92_05815 PF01544 CorA-like Mg2+ transporter protein EJN92_05820 PF08411 Exonuclease C-terminal EJN92_05820 PF00929 Exonuclease EJN92_05825 PF11412 Disulphide bond corrector protein DsbC EJN92_05825 PF02683 Cytochrome C biogenesis protein transmembrane region EJN92_05830 PF01196 Ribosomal protein L17 EJN92_05835 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EJN92_05835 PF01000 RNA polymerase Rpb3/RpoA insert domain EJN92_05835 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EJN92_05840 PF00163 Ribosomal protein S4/S9 N-terminal domain EJN92_05840 PF01479 S4 domain EJN92_05845 PF00411 Ribosomal protein S11 EJN92_05850 PF00416 Ribosomal protein S13/S18 EJN92_05855 PF00444 Ribosomal protein L36 EJN92_05860 PF01176 Translation initiation factor 1A / IF-1 EJN92_05865 PF00344 SecY translocase EJN92_05870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EJN92_05875 PF00327 Ribosomal protein L30p/L7e EJN92_05880 PF00333 Ribosomal protein S5, N-terminal domain EJN92_05880 PF03719 Ribosomal protein S5, C-terminal domain EJN92_05885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EJN92_05890 PF00347 Ribosomal protein L6 EJN92_05895 PF00410 Ribosomal protein S8 EJN92_05900 PF00253 Ribosomal protein S14p/S29e EJN92_05905 PF00673 ribosomal L5P family C-terminus EJN92_05905 PF00281 Ribosomal protein L5 EJN92_05910 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EJN92_05915 PF00238 Ribosomal protein L14p/L23e EJN92_05920 PF00366 Ribosomal protein S17 EJN92_05925 PF00831 Ribosomal L29 protein EJN92_05930 PF00252 Ribosomal protein L16p/L10e EJN92_05935 PF00189 Ribosomal protein S3, C-terminal domain EJN92_05935 PF07650 KH domain EJN92_05940 PF00237 Ribosomal protein L22p/L17e EJN92_05945 PF00203 Ribosomal protein S19 EJN92_05950 PF00181 Ribosomal Proteins L2, RNA binding domain EJN92_05950 PF03947 Ribosomal Proteins L2, C-terminal domain EJN92_05955 PF00276 Ribosomal protein L23 EJN92_05960 PF00573 Ribosomal protein L4/L1 family EJN92_05965 PF00297 Ribosomal protein L3 EJN92_05970 PF00338 Ribosomal protein S10p/S20e EJN92_05975 PF00009 Elongation factor Tu GTP binding domain EJN92_05975 PF03143 Elongation factor Tu C-terminal domain EJN92_05975 PF03144 Elongation factor Tu domain 2 EJN92_05980 PF00679 Elongation factor G C-terminus EJN92_05980 PF03764 Elongation factor G, domain IV EJN92_05980 PF14492 Elongation Factor G, domain II EJN92_05980 PF00009 Elongation factor Tu GTP binding domain EJN92_05980 PF03144 Elongation factor Tu domain 2 EJN92_05985 PF00177 Ribosomal protein S7p/S5e EJN92_05990 PF00164 Ribosomal protein S12/S23 EJN92_05995 PF00884 Sulfatase EJN92_06000 PF02405 Permease MlaE EJN92_06005 PF00005 ABC transporter EJN92_06035 PF07943 Penicillin-binding protein 5, C-terminal domain EJN92_06035 PF00768 D-alanyl-D-alanine carboxypeptidase EJN92_06040 PF01063 Amino-transferase class IV EJN92_06045 PF04359 Protein of unknown function (DUF493) EJN92_06050 PF03466 LysR substrate binding domain EJN92_06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_06065 PF03099 Biotin/lipoate A/B protein ligase family EJN92_06070 PF04055 Radical SAM superfamily EJN92_06090 PF00085 Thioredoxin EJN92_06100 PF00873 AcrB/AcrD/AcrF family EJN92_06105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_06105 PF00529 HlyD membrane-fusion protein of T1SS EJN92_06110 PF01022 Bacterial regulatory protein, arsR family EJN92_06120 PF00457 Glycosyl hydrolases family 11 EJN92_06120 PF01522 Polysaccharide deacetylase EJN92_06140 PF00753 Metallo-beta-lactamase superfamily EJN92_06150 PF00365 Phosphofructokinase EJN92_06170 PF00571 CBS domain EJN92_06170 PF01595 Cyclin M transmembrane N-terminal domain EJN92_06170 PF03471 Transporter associated domain EJN92_06190 PF02321 Outer membrane efflux protein EJN92_06195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_06200 PF00873 AcrB/AcrD/AcrF family EJN92_06205 PF13936 Helix-turn-helix domain EJN92_06205 PF00665 Integrase core domain EJN92_06215 PF02872 5'-nucleotidase, C-terminal domain EJN92_06215 PF00149 Calcineurin-like phosphoesterase EJN92_06220 PF01554 MatE EJN92_06225 PF00990 Diguanylate cyclase, GGDEF domain EJN92_06225 PF17151 Periplasmic sensor domain EJN92_06230 PF00069 Protein kinase domain EJN92_06230 PF03793 PASTA domain EJN92_06240 PF01590 GAF domain EJN92_06240 PF00158 Sigma-54 interaction domain EJN92_06245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EJN92_06250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EJN92_06265 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_06265 PF00107 Zinc-binding dehydrogenase EJN92_06270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EJN92_06270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EJN92_06285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_06290 PF00873 AcrB/AcrD/AcrF family EJN92_06295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_06295 PF03466 LysR substrate binding domain EJN92_06330 PF04055 Radical SAM superfamily EJN92_06330 PF13186 Iron-sulfur cluster-binding domain EJN92_06340 PF13404 AsnC-type helix-turn-helix domain EJN92_06340 PF17805 AsnC-like ligand binding domain EJN92_06345 PF17805 AsnC-like ligand binding domain EJN92_06355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_06360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EJN92_06360 PF10414 Sirohaem synthase dimerisation region EJN92_06360 PF14824 Sirohaem biosynthesis protein central EJN92_06370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_06375 PF02515 CoA-transferase family III EJN92_06380 PF00285 Citrate synthase, C-terminal domain EJN92_06390 PF02525 Flavodoxin-like fold EJN92_06400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_06445 PF04241 Protein of unknown function (DUF423) EJN92_06455 PF00672 HAMP domain EJN92_06455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_06455 PF02203 Tar ligand binding domain homologue EJN92_06460 PF01678 Diaminopimelate epimerase EJN92_06470 PF02899 Phage integrase, N-terminal SAM-like domain EJN92_06470 PF00589 Phage integrase family EJN92_06480 PF07683 Cobalamin synthesis protein cobW C-terminal domain EJN92_06480 PF02492 CobW/HypB/UreG, nucleotide-binding domain EJN92_06485 PF01258 Prokaryotic dksA/traR C4-type zinc finger EJN92_06495 PF00227 Proteasome subunit EJN92_06500 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_06500 PF07724 AAA domain (Cdc48 subfamily) EJN92_06515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EJN92_06515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EJN92_06525 PF02556 Preprotein translocase subunit SecB EJN92_06530 PF00462 Glutaredoxin EJN92_06535 PF00581 Rhodanese-like domain EJN92_06540 PF00300 Histidine phosphatase superfamily (branch 1) EJN92_06545 PF01551 Peptidase family M23 EJN92_06550 PF03572 Peptidase family S41 EJN92_06550 PF13180 PDZ domain EJN92_06555 PF00899 ThiF family EJN92_06560 PF00990 Diguanylate cyclase, GGDEF domain EJN92_06560 PF03707 Bacterial signalling protein N terminal repeat EJN92_06560 PF00563 EAL domain EJN92_06570 PF00593 TonB dependent receptor EJN92_06570 PF07715 TonB-dependent Receptor Plug Domain EJN92_06575 PF04715 Anthranilate synthase component I, N terminal region EJN92_06575 PF00425 chorismate binding enzyme EJN92_06575 PF00117 Glutamine amidotransferase class-I EJN92_06580 PF00563 EAL domain EJN92_06580 PF00990 Diguanylate cyclase, GGDEF domain EJN92_06580 PF03707 Bacterial signalling protein N terminal repeat EJN92_06585 PF00440 Bacterial regulatory proteins, tetR family EJN92_06595 PF00696 Amino acid kinase family EJN92_06600 PF04542 Sigma-70 region 2 EJN92_06600 PF08281 Sigma-70, region 4 EJN92_06610 PF01227 GTP cyclohydrolase I EJN92_06620 PF04972 BON domain EJN92_06625 PF13580 SIS domain EJN92_06630 PF02021 Uncharacterised protein family UPF0102 EJN92_06635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EJN92_06640 PF03330 Lytic transglycolase EJN92_06640 PF05036 Sporulation related domain EJN92_06645 PF01098 Cell cycle protein EJN92_06650 PF00905 Penicillin binding protein transpeptidase domain EJN92_06650 PF03717 Penicillin-binding Protein dimerisation domain EJN92_06660 PF04085 rod shape-determining protein MreC EJN92_06670 PF02686 Glu-tRNAGln amidotransferase C subunit EJN92_06675 PF01425 Amidase EJN92_06685 PF02934 GatB/GatE catalytic domain EJN92_06685 PF02637 GatB domain EJN92_06690 PF00156 Phosphoribosyl transferase domain EJN92_06700 PF02203 Tar ligand binding domain homologue EJN92_06700 PF00672 HAMP domain EJN92_06700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_06705 PF06969 HemN C-terminal domain EJN92_06720 PF00990 Diguanylate cyclase, GGDEF domain EJN92_06720 PF00563 EAL domain EJN92_06720 PF03707 Bacterial signalling protein N terminal repeat EJN92_06750 PF16363 GDP-mannose 4,6 dehydratase EJN92_06755 PF04321 RmlD substrate binding domain EJN92_06760 PF00483 Nucleotidyl transferase EJN92_06765 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EJN92_06770 PF01050 Mannose-6-phosphate isomerase EJN92_06770 PF00483 Nucleotidyl transferase EJN92_06785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EJN92_06785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EJN92_06785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EJN92_06790 PF16363 GDP-mannose 4,6 dehydratase EJN92_06820 PF16363 GDP-mannose 4,6 dehydratase EJN92_06825 PF16363 GDP-mannose 4,6 dehydratase EJN92_06830 PF13439 Glycosyltransferase Family 4 EJN92_06830 PF00534 Glycosyl transferases group 1 EJN92_06850 PF00106 short chain dehydrogenase EJN92_06860 PF01565 FAD binding domain EJN92_06860 PF04030 D-arabinono-1,4-lactone oxidase EJN92_06870 PF01040 UbiA prenyltransferase family EJN92_06880 PF03372 Endonuclease/Exonuclease/phosphatase family EJN92_06885 PF00149 Calcineurin-like phosphoesterase EJN92_06885 PF17936 Bacterial Ig domain EJN92_06885 PF02872 5'-nucleotidase, C-terminal domain EJN92_06895 PF01435 Peptidase family M48 EJN92_06900 PF07690 Major Facilitator Superfamily EJN92_06905 PF00561 alpha/beta hydrolase fold EJN92_06905 PF07021 Methionine biosynthesis protein MetW EJN92_06910 PF00561 alpha/beta hydrolase fold EJN92_06920 PF05524 PEP-utilising enzyme, N-terminal EJN92_06920 PF02896 PEP-utilising enzyme, TIM barrel domain EJN92_06920 PF00391 PEP-utilising enzyme, mobile domain EJN92_06925 PF00381 PTS HPr component phosphorylation site EJN92_06935 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EJN92_06935 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EJN92_06945 PF03992 Antibiotic biosynthesis monooxygenase EJN92_06955 PF01124 MAPEG family EJN92_06965 PF00990 Diguanylate cyclase, GGDEF domain EJN92_06965 PF00072 Response regulator receiver domain EJN92_06980 PF00501 AMP-binding enzyme EJN92_06985 PF00005 ABC transporter EJN92_06985 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_06990 PF02653 Branched-chain amino acid transport system / permease component EJN92_07005 PF00005 ABC transporter EJN92_07020 PF00561 alpha/beta hydrolase fold EJN92_07040 PF00107 Zinc-binding dehydrogenase EJN92_07040 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_07045 PF00440 Bacterial regulatory proteins, tetR family EJN92_07055 PF00194 Eukaryotic-type carbonic anhydrase EJN92_07070 PF00378 Enoyl-CoA hydratase/isomerase EJN92_07085 PF01965 DJ-1/PfpI family EJN92_07090 PF07715 TonB-dependent Receptor Plug Domain EJN92_07090 PF00593 TonB dependent receptor EJN92_07100 PF00437 Type II/IV secretion system protein EJN92_07125 PF01844 HNH endonuclease EJN92_07135 PF05971 RNA methyltransferase EJN92_07140 PF09905 DNA-binding protein VF530 EJN92_07145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EJN92_07155 PF03466 LysR substrate binding domain EJN92_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_07160 PF03466 LysR substrate binding domain EJN92_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_07170 PF01642 Methylmalonyl-CoA mutase EJN92_07170 PF02310 B12 binding domain EJN92_07185 PF03050 Transposase IS66 family EJN92_07185 PF13817 IS66 C-terminal element EJN92_07185 PF13005 zinc-finger binding domain of transposase IS66 EJN92_07185 PF13007 Transposase C of IS166 homeodomain EJN92_07210 PF04185 Phosphoesterase family EJN92_07235 PF03831 PhnA domain EJN92_07235 PF08274 PhnA Zinc-Ribbon EJN92_07240 PF00850 Histone deacetylase domain EJN92_07250 PF00667 FAD binding domain EJN92_07250 PF00258 Flavodoxin EJN92_07250 PF00175 Oxidoreductase NAD-binding domain EJN92_07255 PF02424 ApbE family EJN92_07300 PF01381 Helix-turn-helix EJN92_07305 PF00326 Prolyl oligopeptidase family EJN92_07310 PF02675 S-adenosylmethionine decarboxylase EJN92_07330 PF03994 Domain of Unknown Function (DUF350) EJN92_07340 PF00890 FAD binding domain EJN92_07340 PF04205 FMN-binding domain EJN92_07340 PF03358 NADPH-dependent FMN reductase EJN92_07350 PF03974 Ecotin EJN92_07365 PF05661 Protein of unknown function (DUF808) EJN92_07370 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_07370 PF14602 Hexapeptide repeat of succinyl-transferase EJN92_07370 PF12804 MobA-like NTP transferase domain EJN92_07375 PF00512 His Kinase A (phospho-acceptor) domain EJN92_07375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_07385 PF01171 PP-loop family EJN92_07410 PF00072 Response regulator receiver domain EJN92_07420 PF01810 LysE type translocator EJN92_07430 PF03960 ArsC family EJN92_07435 PF01169 Uncharacterized protein family UPF0016 EJN92_07450 PF13416 Bacterial extracellular solute-binding protein EJN92_07455 PF00854 POT family EJN92_07485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EJN92_07490 PF13660 Domain of unknown function (DUF4147) EJN92_07490 PF05161 MOFRL family EJN92_07495 PF01546 Peptidase family M20/M25/M40 EJN92_07495 PF07687 Peptidase dimerisation domain EJN92_07505 PF00576 HIUase/Transthyretin family EJN92_07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_07510 PF03466 LysR substrate binding domain EJN92_07525 PF01979 Amidohydrolase family EJN92_07535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EJN92_07535 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EJN92_07540 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_07540 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EJN92_07540 PF01799 [2Fe-2S] binding domain EJN92_07540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EJN92_07545 PF00005 ABC transporter EJN92_07560 PF02608 ABC transporter substrate-binding protein PnrA-like EJN92_07575 PF11849 Domain of unknown function (DUF3369) EJN92_07580 PF11791 Aconitate B N-terminal domain EJN92_07580 PF06434 Aconitate hydratase 2 N-terminus EJN92_07580 PF00330 Aconitase family (aconitate hydratase) EJN92_07585 PF14864 Alkyl sulfatase C-terminal EJN92_07585 PF00753 Metallo-beta-lactamase superfamily EJN92_07585 PF14863 Alkyl sulfatase dimerisation EJN92_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_07590 PF03466 LysR substrate binding domain EJN92_07595 PF01068 ATP dependent DNA ligase domain EJN92_07595 PF14743 DNA ligase OB-like domain EJN92_07605 PF00440 Bacterial regulatory proteins, tetR family EJN92_07640 PF00106 short chain dehydrogenase EJN92_07660 PF01757 Acyltransferase family EJN92_07665 PF06123 Inner membrane protein CreD EJN92_07675 PF00512 His Kinase A (phospho-acceptor) domain EJN92_07675 PF00672 HAMP domain EJN92_07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_07680 PF00072 Response regulator receiver domain EJN92_07680 PF00486 Transcriptional regulatory protein, C terminal EJN92_07685 PF00463 Isocitrate lyase family EJN92_07720 PF05199 GMC oxidoreductase EJN92_07720 PF00732 GMC oxidoreductase EJN92_07745 PF02627 Carboxymuconolactone decarboxylase family EJN92_07750 PF12680 SnoaL-like domain EJN92_07750 PF04542 Sigma-70 region 2 EJN92_07750 PF08281 Sigma-70, region 4 EJN92_07760 PF01546 Peptidase family M20/M25/M40 EJN92_07760 PF07687 Peptidase dimerisation domain EJN92_07765 PF00672 HAMP domain EJN92_07765 PF02203 Tar ligand binding domain homologue EJN92_07765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_07780 PF13335 Magnesium chelatase, subunit ChlI C-terminal EJN92_07780 PF01078 Magnesium chelatase, subunit ChlI EJN92_07785 PF04380 Membrane fusogenic activity EJN92_07795 PF00543 Nitrogen regulatory protein P-II EJN92_07800 PF00909 Ammonium Transporter Family EJN92_07810 PF00271 Helicase conserved C-terminal domain EJN92_07810 PF00270 DEAD/DEAH box helicase EJN92_07810 PF03880 DbpA RNA binding domain EJN92_07820 PF00512 His Kinase A (phospho-acceptor) domain EJN92_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_07835 PF01966 HD domain EJN92_07835 PF00072 Response regulator receiver domain EJN92_07840 PF00563 EAL domain EJN92_07840 PF13426 PAS domain EJN92_07840 PF00990 Diguanylate cyclase, GGDEF domain EJN92_07845 PF02142 MGS-like domain EJN92_07865 PF02417 Chromate transporter EJN92_07900 PF13411 MerR HTH family regulatory protein EJN92_07915 PF00005 ABC transporter EJN92_07925 PF04542 Sigma-70 region 2 EJN92_07925 PF08281 Sigma-70, region 4 EJN92_07930 PF01209 ubiE/COQ5 methyltransferase family EJN92_07960 PF00005 ABC transporter EJN92_07965 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_07970 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_08000 PF04185 Phosphoesterase family EJN92_08000 PF05506 Domain of unknown function (DUF756) EJN92_08035 PF00672 HAMP domain EJN92_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_08035 PF00512 His Kinase A (phospho-acceptor) domain EJN92_08040 PF00486 Transcriptional regulatory protein, C terminal EJN92_08040 PF00072 Response regulator receiver domain EJN92_08050 PF00563 EAL domain EJN92_08050 PF00990 Diguanylate cyclase, GGDEF domain EJN92_08050 PF03707 Bacterial signalling protein N terminal repeat EJN92_08055 PF00012 Hsp70 protein EJN92_08060 PF01595 Cyclin M transmembrane N-terminal domain EJN92_08060 PF03471 Transporter associated domain EJN92_08060 PF00571 CBS domain EJN92_08065 PF00375 Sodium:dicarboxylate symporter family EJN92_08070 PF00155 Aminotransferase class I and II EJN92_08070 PF00392 Bacterial regulatory proteins, gntR family EJN92_08095 PF03707 Bacterial signalling protein N terminal repeat EJN92_08095 PF00990 Diguanylate cyclase, GGDEF domain EJN92_08095 PF00563 EAL domain EJN92_08100 PF00301 Rubredoxin EJN92_08105 PF00487 Fatty acid desaturase EJN92_08110 PF12833 Helix-turn-helix domain EJN92_08110 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EJN92_08135 PF04209 homogentisate 1,2-dioxygenase EJN92_08140 PF03466 LysR substrate binding domain EJN92_08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_08145 PF01070 FMN-dependent dehydrogenase EJN92_08150 PF00011 Hsp20/alpha crystallin family EJN92_08155 PF00265 Thymidine kinase EJN92_08180 PF00892 EamA-like transporter family EJN92_08185 PF00857 Isochorismatase family EJN92_08190 PF12833 Helix-turn-helix domain EJN92_08190 PF01965 DJ-1/PfpI family EJN92_08200 PF17074 Darcynin, domain of unknown function EJN92_08225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EJN92_08240 PF00682 HMGL-like EJN92_08245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EJN92_08245 PF00364 Biotin-requiring enzyme EJN92_08245 PF02785 Biotin carboxylase C-terminal domain EJN92_08245 PF00289 Biotin carboxylase, N-terminal domain EJN92_08250 PF06968 Biotin and Thiamin Synthesis associated domain EJN92_08250 PF04055 Radical SAM superfamily EJN92_08260 PF00155 Aminotransferase class I and II EJN92_08265 PF00202 Aminotransferase class-III EJN92_08270 PF00378 Enoyl-CoA hydratase/isomerase EJN92_08280 PF01039 Carboxyl transferase domain EJN92_08295 PF01323 DSBA-like thioredoxin domain EJN92_08300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_08300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_08300 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_08310 PF00108 Thiolase, N-terminal domain EJN92_08310 PF02803 Thiolase, C-terminal domain EJN92_08315 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) EJN92_08320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_08320 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_08320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_08330 PF13411 MerR HTH family regulatory protein EJN92_08340 PF00892 EamA-like transporter family EJN92_08350 PF00672 HAMP domain EJN92_08350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_08350 PF02743 Cache domain EJN92_08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_08355 PF00512 His Kinase A (phospho-acceptor) domain EJN92_08355 PF01627 Hpt domain EJN92_08355 PF00072 Response regulator receiver domain EJN92_08355 PF00672 HAMP domain EJN92_08355 PF17149 Periplasmic sensor domain found in signal transduction proteins EJN92_08360 PF00072 Response regulator receiver domain EJN92_08360 PF01339 CheB methylesterase EJN92_08365 PF00593 TonB dependent receptor EJN92_08365 PF07715 TonB-dependent Receptor Plug Domain EJN92_08370 PF01497 Periplasmic binding protein EJN92_08375 PF00106 short chain dehydrogenase EJN92_08380 PF13462 Thioredoxin EJN92_08390 PF00750 tRNA synthetases class I (R) EJN92_08390 PF03485 Arginyl tRNA synthetase N terminal domain EJN92_08390 PF05746 DALR anticodon binding domain EJN92_08395 PF04381 Putative exonuclease, RdgC EJN92_08440 PF01339 CheB methylesterase EJN92_08440 PF00072 Response regulator receiver domain EJN92_08445 PF00854 POT family EJN92_08450 PF00108 Thiolase, N-terminal domain EJN92_08450 PF02803 Thiolase, C-terminal domain EJN92_08460 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EJN92_08460 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EJN92_08465 PF02805 Metal binding domain of Ada EJN92_08465 PF12833 Helix-turn-helix domain EJN92_08465 PF00730 HhH-GPD superfamily base excision DNA repair protein EJN92_08465 PF06029 AlkA N-terminal domain EJN92_08470 PF07690 Major Facilitator Superfamily EJN92_08475 PF01432 Peptidase family M3 EJN92_08485 PF02203 Tar ligand binding domain homologue EJN92_08485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_08485 PF00672 HAMP domain EJN92_08495 PF00593 TonB dependent receptor EJN92_08495 PF07715 TonB-dependent Receptor Plug Domain EJN92_08500 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_08500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EJN92_08520 PF00817 impB/mucB/samB family EJN92_08520 PF11799 impB/mucB/samB family C-terminal domain EJN92_08530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_08530 PF00989 PAS fold EJN92_08530 PF00512 His Kinase A (phospho-acceptor) domain EJN92_08530 PF00672 HAMP domain EJN92_08540 PF05199 GMC oxidoreductase EJN92_08540 PF00732 GMC oxidoreductase EJN92_08550 PF00107 Zinc-binding dehydrogenase EJN92_08550 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_08555 PF03466 LysR substrate binding domain EJN92_08560 PF04247 Invasion gene expression up-regulator, SirB EJN92_08575 PF00675 Insulinase (Peptidase family M16) EJN92_08575 PF05193 Peptidase M16 inactive domain EJN92_08580 PF01263 Aldose 1-epimerase EJN92_08590 PF00924 Mechanosensitive ion channel EJN92_08590 PF12794 Mechanosensitive ion channel inner membrane domain 1 EJN92_08590 PF12795 Mechanosensitive ion channel porin domain EJN92_08620 PF13361 UvrD-like helicase C-terminal domain EJN92_08620 PF00580 UvrD/REP helicase N-terminal domain EJN92_08640 PF05567 Neisseria PilC beta-propeller domain EJN92_08665 PF00114 Pilin (bacterial filament) EJN92_08665 PF07963 Prokaryotic N-terminal methylation motif EJN92_08680 PF00109 Beta-ketoacyl synthase, N-terminal domain EJN92_08680 PF02801 Beta-ketoacyl synthase, C-terminal domain EJN92_08695 PF00109 Beta-ketoacyl synthase, N-terminal domain EJN92_08695 PF02801 Beta-ketoacyl synthase, C-terminal domain EJN92_08705 PF04820 Tryptophan halogenase EJN92_08720 PF03061 Thioesterase superfamily EJN92_08725 PF00221 Aromatic amino acid lyase EJN92_08745 PF00501 AMP-binding enzyme EJN92_08745 PF13193 AMP-binding enzyme C-terminal domain EJN92_08755 PF00550 Phosphopantetheine attachment site EJN92_08760 PF00550 Phosphopantetheine attachment site EJN92_08820 PF04344 Chemotaxis phosphatase, CheZ EJN92_08830 PF17151 Periplasmic sensor domain EJN92_08830 PF00990 Diguanylate cyclase, GGDEF domain EJN92_08835 PF13302 Acetyltransferase (GNAT) domain EJN92_08855 PF03466 LysR substrate binding domain EJN92_08855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_08895 PF18074 Primosomal protein N C-terminal domain EJN92_08895 PF17764 3′ DNA-binding domain (3′BD) EJN92_08895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EJN92_08895 PF00270 DEAD/DEAH box helicase EJN92_08895 PF00271 Helicase conserved C-terminal domain EJN92_08900 PF01208 Uroporphyrinogen decarboxylase (URO-D) EJN92_08905 PF03976 Polyphosphate kinase 2 (PPK2) EJN92_08915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EJN92_08915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EJN92_08920 PF02874 ATP synthase alpha/beta family, beta-barrel domain EJN92_08920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EJN92_08925 PF00231 ATP synthase EJN92_08930 PF02874 ATP synthase alpha/beta family, beta-barrel domain EJN92_08930 PF00306 ATP synthase alpha/beta chain, C terminal domain EJN92_08930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EJN92_08935 PF00213 ATP synthase delta (OSCP) subunit EJN92_08940 PF00430 ATP synthase B/B' CF(0) EJN92_08945 PF00137 ATP synthase subunit C EJN92_08950 PF00119 ATP synthase A chain EJN92_08965 PF02195 ParB-like nuclease domain EJN92_08965 PF17762 HTH domain found in ParB protein EJN92_08970 PF13614 AAA domain EJN92_08975 PF02527 rRNA small subunit methyltransferase G EJN92_08980 PF01134 Glucose inhibited division protein A EJN92_08980 PF13932 GidA associated domain EJN92_08985 PF01925 Sulfite exporter TauE/SafE EJN92_08990 PF00465 Iron-containing alcohol dehydrogenase EJN92_09000 PF02653 Branched-chain amino acid transport system / permease component EJN92_09010 PF00005 ABC transporter EJN92_09015 PF00005 ABC transporter EJN92_09015 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_09020 PF05199 GMC oxidoreductase EJN92_09020 PF00732 GMC oxidoreductase EJN92_09025 PF03060 Nitronate monooxygenase EJN92_09030 PF02203 Tar ligand binding domain homologue EJN92_09030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_09030 PF00672 HAMP domain EJN92_09045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_09050 PF01863 Protein of unknown function DUF45 EJN92_09055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EJN92_09055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EJN92_09090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EJN92_09090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EJN92_09095 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EJN92_09095 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EJN92_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09115 PF03466 LysR substrate binding domain EJN92_09120 PF00677 Lumazine binding domain EJN92_09130 PF01554 MatE EJN92_09135 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EJN92_09145 PF07715 TonB-dependent Receptor Plug Domain EJN92_09145 PF00593 TonB dependent receptor EJN92_09150 PF07993 Male sterility protein EJN92_09150 PF00550 Phosphopantetheine attachment site EJN92_09150 PF00501 AMP-binding enzyme EJN92_09150 PF00668 Condensation domain EJN92_09150 PF13193 AMP-binding enzyme C-terminal domain EJN92_09160 PF07883 Cupin domain EJN92_09165 PF02627 Carboxymuconolactone decarboxylase family EJN92_09180 PF01810 LysE type translocator EJN92_09185 PF11849 Domain of unknown function (DUF3369) EJN92_09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09190 PF00512 His Kinase A (phospho-acceptor) domain EJN92_09190 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_09195 PF01037 Lrp/AsnC ligand binding domain EJN92_09200 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EJN92_09200 PF01619 Proline dehydrogenase EJN92_09200 PF14850 DNA-binding domain of Proline dehydrogenase EJN92_09200 PF00171 Aldehyde dehydrogenase family EJN92_09220 PF03466 LysR substrate binding domain EJN92_09220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09230 PF07690 Major Facilitator Superfamily EJN92_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09240 PF03466 LysR substrate binding domain EJN92_09255 PF01266 FAD dependent oxidoreductase EJN92_09265 PF02203 Tar ligand binding domain homologue EJN92_09265 PF00672 HAMP domain EJN92_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_09275 PF13609 Gram-negative porin EJN92_09285 PF13230 Glutamine amidotransferases class-II EJN92_09290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09290 PF03466 LysR substrate binding domain EJN92_09305 PF00809 Pterin binding enzyme EJN92_09305 PF02965 Vitamin B12 dependent methionine synthase, activation domain EJN92_09305 PF02574 Homocysteine S-methyltransferase EJN92_09305 PF02310 B12 binding domain EJN92_09305 PF02607 B12 binding domain EJN92_09310 PF03741 Integral membrane protein TerC family EJN92_09315 PF01027 Inhibitor of apoptosis-promoting Bax1 EJN92_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09320 PF03466 LysR substrate binding domain EJN92_09325 PF00551 Formyl transferase EJN92_09325 PF02911 Formyl transferase, C-terminal domain EJN92_09330 PF01327 Polypeptide deformylase EJN92_09340 PF02481 DNA recombination-mediator protein A EJN92_09340 PF17782 DprA winged helix domain EJN92_09345 PF04361 Protein of unknown function (DUF494) EJN92_09350 PF01751 Toprim domain EJN92_09350 PF01131 DNA topoisomerase EJN92_09390 PF06580 Histidine kinase EJN92_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09390 PF02743 Cache domain EJN92_09390 PF00672 HAMP domain EJN92_09395 PF04397 LytTr DNA-binding domain EJN92_09395 PF00072 Response regulator receiver domain EJN92_09400 PF00563 EAL domain EJN92_09400 PF00990 Diguanylate cyclase, GGDEF domain EJN92_09400 PF03707 Bacterial signalling protein N terminal repeat EJN92_09405 PF11871 Domain of unknown function (DUF3391) EJN92_09405 PF01966 HD domain EJN92_09410 PF10459 Peptidase S46 EJN92_09420 PF08281 Sigma-70, region 4 EJN92_09420 PF04542 Sigma-70 region 2 EJN92_09455 PF04397 LytTr DNA-binding domain EJN92_09455 PF00072 Response regulator receiver domain EJN92_09460 PF06580 Histidine kinase EJN92_09460 PF07694 5TMR of 5TMR-LYT EJN92_09460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09460 PF13492 GAF domain EJN92_09465 PF03466 LysR substrate binding domain EJN92_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09475 PF00892 EamA-like transporter family EJN92_09480 PF01810 LysE type translocator EJN92_09485 PF00990 Diguanylate cyclase, GGDEF domain EJN92_09485 PF17158 Membrane-associated sensor, integral membrane domain EJN92_09490 PF03922 OmpW family EJN92_09495 PF12848 ABC transporter EJN92_09495 PF00005 ABC transporter EJN92_09505 PF01205 Uncharacterized protein family UPF0029 EJN92_09505 PF09186 Domain of unknown function (DUF1949) EJN92_09515 PF00534 Glycosyl transferases group 1 EJN92_09520 PF13537 Glutamine amidotransferase domain EJN92_09520 PF00733 Asparagine synthase EJN92_09525 PF00534 Glycosyl transferases group 1 EJN92_09525 PF13579 Glycosyl transferase 4-like domain EJN92_09530 PF00534 Glycosyl transferases group 1 EJN92_09530 PF13439 Glycosyltransferase Family 4 EJN92_09570 PF03062 MBOAT, membrane-bound O-acyltransferase family EJN92_09600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EJN92_09630 PF01522 Polysaccharide deacetylase EJN92_09635 PF02350 UDP-N-acetylglucosamine 2-epimerase EJN92_09640 PF13401 AAA domain EJN92_09640 PF01471 Putative peptidoglycan binding domain EJN92_09650 PF13614 AAA domain EJN92_09660 PF02563 Polysaccharide biosynthesis/export protein EJN92_09660 PF10531 SLBB domain EJN92_09675 PF01548 Transposase EJN92_09675 PF02371 Transposase IS116/IS110/IS902 family EJN92_09685 PF02515 CoA-transferase family III EJN92_09690 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_09690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_09690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_09700 PF00440 Bacterial regulatory proteins, tetR family EJN92_09735 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_09740 PF08402 TOBE domain EJN92_09740 PF00005 ABC transporter EJN92_09745 PF01804 Penicillin amidase EJN92_09760 PF00043 Glutathione S-transferase, C-terminal domain EJN92_09760 PF02798 Glutathione S-transferase, N-terminal domain EJN92_09775 PF00067 Cytochrome P450 EJN92_09790 PF05594 Haemagluttinin repeat EJN92_09790 PF04829 Pre-toxin domain with VENN motif EJN92_09790 PF15526 Novel toxin 21 EJN92_09790 PF05860 haemagglutination activity domain EJN92_09790 PF13332 Hemagglutinin repeat EJN92_09795 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EJN92_09795 PF17287 POTRA domain EJN92_09795 PF08479 POTRA domain, ShlB-type EJN92_09805 PF03033 Glycosyltransferase family 28 N-terminal domain EJN92_09810 PF18642 Immunomodulating metalloprotease helical domain EJN92_09810 PF13402 Peptidase M60, enhancin and enhancin-like EJN92_09810 PF18650 Immunomodulating metalloprotease N-terminal domain EJN92_09815 PF01037 Lrp/AsnC ligand binding domain EJN92_09815 PF13404 AsnC-type helix-turn-helix domain EJN92_09825 PF00144 Beta-lactamase EJN92_09835 PF00072 Response regulator receiver domain EJN92_09850 PF00437 Type II/IV secretion system protein EJN92_09855 PF07963 Prokaryotic N-terminal methylation motif EJN92_09855 PF00114 Pilin (bacterial filament) EJN92_09860 PF07963 Prokaryotic N-terminal methylation motif EJN92_09860 PF00114 Pilin (bacterial filament) EJN92_09880 PF03466 LysR substrate binding domain EJN92_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_09920 PF07687 Peptidase dimerisation domain EJN92_09920 PF01546 Peptidase family M20/M25/M40 EJN92_09940 PF00892 EamA-like transporter family EJN92_09945 PF00512 His Kinase A (phospho-acceptor) domain EJN92_09945 PF01627 Hpt domain EJN92_09945 PF00072 Response regulator receiver domain EJN92_09945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_09945 PF00672 HAMP domain EJN92_09945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09950 PF00072 Response regulator receiver domain EJN92_09950 PF04397 LytTr DNA-binding domain EJN92_09955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09955 PF07694 5TMR of 5TMR-LYT EJN92_09955 PF06580 Histidine kinase EJN92_09980 PF01029 NusB family EJN92_09980 PF01189 16S rRNA methyltransferase RsmB/F EJN92_09990 PF00512 His Kinase A (phospho-acceptor) domain EJN92_09990 PF00672 HAMP domain EJN92_09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_09990 PF00989 PAS fold EJN92_09995 PF00158 Sigma-54 interaction domain EJN92_09995 PF00072 Response regulator receiver domain EJN92_09995 PF02954 Bacterial regulatory protein, Fis family EJN92_09995 PF00158 Sigma-54 interaction domain EJN92_09995 PF00072 Response regulator receiver domain EJN92_09995 PF02954 Bacterial regulatory protein, Fis family EJN92_10005 PF12091 Protein of unknown function (DUF3567) EJN92_10010 PF00962 Adenosine/AMP deaminase EJN92_10035 PF03167 Uracil DNA glycosylase superfamily EJN92_10045 PF07715 TonB-dependent Receptor Plug Domain EJN92_10045 PF00593 TonB dependent receptor EJN92_10050 PF04229 GrpB protein EJN92_10085 PF13302 Acetyltransferase (GNAT) domain EJN92_10090 PF13840 ACT domain EJN92_10090 PF03447 Homoserine dehydrogenase, NAD binding domain EJN92_10090 PF00742 Homoserine dehydrogenase EJN92_10090 PF01842 ACT domain EJN92_10090 PF00696 Amino acid kinase family EJN92_10095 PF07690 Major Facilitator Superfamily EJN92_10115 PF00581 Rhodanese-like domain EJN92_10130 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_10135 PF08348 YheO-like PAS domain EJN92_10135 PF13309 HTH domain EJN92_10140 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_10150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_10155 PF00175 Oxidoreductase NAD-binding domain EJN92_10155 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_10155 PF00970 Oxidoreductase FAD-binding domain EJN92_10160 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EJN92_10160 PF12833 Helix-turn-helix domain EJN92_10175 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_10180 PF03781 Sulfatase-modifying factor enzyme 1 EJN92_10230 PF00144 Beta-lactamase EJN92_10240 PF00462 Glutaredoxin EJN92_10255 PF13302 Acetyltransferase (GNAT) domain EJN92_10260 PF01810 LysE type translocator EJN92_10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_10265 PF03466 LysR substrate binding domain EJN92_10270 PF03471 Transporter associated domain EJN92_10270 PF01595 Cyclin M transmembrane N-terminal domain EJN92_10270 PF00571 CBS domain EJN92_10295 PF00392 Bacterial regulatory proteins, gntR family EJN92_10295 PF07085 DRTGG domain EJN92_10295 PF00571 CBS domain EJN92_10295 PF03061 Thioesterase superfamily EJN92_10300 PF05726 Pirin C-terminal cupin domain EJN92_10300 PF02678 Pirin EJN92_10310 PF04185 Phosphoesterase family EJN92_10310 PF05506 Domain of unknown function (DUF756) EJN92_10315 PF03466 LysR substrate binding domain EJN92_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_10330 PF09828 Chromate resistance exported protein EJN92_10335 PF02417 Chromate transporter EJN92_10340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EJN92_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_10350 PF03466 LysR substrate binding domain EJN92_10380 PF01909 Nucleotidyltransferase domain EJN92_10385 PF08780 Nucleotidyltransferase substrate binding protein like EJN92_10390 PF00204 DNA gyrase B EJN92_10390 PF00986 DNA gyrase B subunit, carboxyl terminus EJN92_10390 PF18053 DNA gyrase B subunit insert domain EJN92_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_10390 PF01751 Toprim domain EJN92_10395 PF02767 DNA polymerase III beta subunit, central domain EJN92_10395 PF00712 DNA polymerase III beta subunit, N-terminal domain EJN92_10395 PF02768 DNA polymerase III beta subunit, C-terminal domain EJN92_10400 PF00308 Bacterial dnaA protein EJN92_10400 PF08299 Bacterial dnaA protein helix-turn-helix EJN92_10400 PF11638 DnaA N-terminal domain EJN92_10405 PF00468 Ribosomal protein L34 EJN92_10410 PF00825 Ribonuclease P EJN92_10415 PF01809 Putative membrane protein insertion efficiency factor EJN92_10420 PF14849 YidC periplasmic domain EJN92_10420 PF02096 60Kd inner membrane protein EJN92_10425 PF10396 GTP-binding protein TrmE N-terminus EJN92_10425 PF12631 MnmE helical domain EJN92_10425 PF01926 50S ribosome-binding GTPase EJN92_10455 PF03958 Bacterial type II/III secretion system short domain EJN92_10455 PF07660 Secretin and TonB N terminus short domain EJN92_10455 PF11741 AMIN domain EJN92_10455 PF00263 Bacterial type II and III secretion system protein EJN92_10480 PF00437 Type II/IV secretion system protein EJN92_10485 PF00482 Type II secretion system (T2SS), protein F EJN92_10490 PF08334 Type II secretion system (T2SS), protein G EJN92_10490 PF07963 Prokaryotic N-terminal methylation motif EJN92_10500 PF00082 Subtilase family EJN92_10510 PF02397 Bacterial sugar transferase EJN92_10515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_10515 PF00989 PAS fold EJN92_10515 PF00512 His Kinase A (phospho-acceptor) domain EJN92_10520 PF00158 Sigma-54 interaction domain EJN92_10520 PF00072 Response regulator receiver domain EJN92_10520 PF02954 Bacterial regulatory protein, Fis family EJN92_10525 PF00550 Phosphopantetheine attachment site EJN92_10525 PF00668 Condensation domain EJN92_10525 PF13193 AMP-binding enzyme C-terminal domain EJN92_10525 PF00501 AMP-binding enzyme EJN92_10530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EJN92_10530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EJN92_10540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EJN92_10540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EJN92_10540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EJN92_10545 PF01370 NAD dependent epimerase/dehydratase family EJN92_10555 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) EJN92_10560 PF01451 Low molecular weight phosphotyrosine protein phosphatase EJN92_10565 PF01757 Acyltransferase family EJN92_10580 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EJN92_10585 PF03009 Glycerophosphoryl diester phosphodiesterase family EJN92_10605 PF06969 HemN C-terminal domain EJN92_10605 PF04055 Radical SAM superfamily EJN92_10610 PF02082 Transcriptional regulator EJN92_10615 PF00115 Cytochrome C and Quinol oxidase polypeptide I EJN92_10625 PF00512 His Kinase A (phospho-acceptor) domain EJN92_10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_10630 PF00486 Transcriptional regulatory protein, C terminal EJN92_10630 PF00072 Response regulator receiver domain EJN92_10640 PF00072 Response regulator receiver domain EJN92_10640 PF00486 Transcriptional regulatory protein, C terminal EJN92_10645 PF00672 HAMP domain EJN92_10645 PF00512 His Kinase A (phospho-acceptor) domain EJN92_10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_10665 PF03466 LysR substrate binding domain EJN92_10670 PF12833 Helix-turn-helix domain EJN92_10670 PF12852 Cupin EJN92_10695 PF01966 HD domain EJN92_10700 PF08402 TOBE domain EJN92_10700 PF00005 ABC transporter EJN92_10705 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_10710 PF00266 Aminotransferase class-V EJN92_10725 PF00392 Bacterial regulatory proteins, gntR family EJN92_10725 PF07702 UTRA domain EJN92_10745 PF00639 PPIC-type PPIASE domain EJN92_10745 PF09312 SurA N-terminal domain EJN92_10775 PF01380 SIS domain EJN92_10780 PF01037 Lrp/AsnC ligand binding domain EJN92_10795 PF07690 Major Facilitator Superfamily EJN92_10800 PF00384 Molybdopterin oxidoreductase EJN92_10805 PF02634 FdhD/NarQ family EJN92_10810 PF00893 Small Multidrug Resistance protein EJN92_10815 PF03848 Tellurite resistance protein TehB EJN92_10825 PF03793 PASTA domain EJN92_10825 PF00069 Protein kinase domain EJN92_10835 PF04262 Glutamate-cysteine ligase EJN92_10880 PF01464 Transglycosylase SLT domain EJN92_10900 PF02203 Tar ligand binding domain homologue EJN92_10900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_10900 PF00672 HAMP domain EJN92_10920 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EJN92_10920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EJN92_10935 PF00990 Diguanylate cyclase, GGDEF domain EJN92_10935 PF17151 Periplasmic sensor domain EJN92_10945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_10945 PF00512 His Kinase A (phospho-acceptor) domain EJN92_10975 PF00873 AcrB/AcrD/AcrF family EJN92_10995 PF00072 Response regulator receiver domain EJN92_10995 PF00486 Transcriptional regulatory protein, C terminal EJN92_11005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11005 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11005 PF00672 HAMP domain EJN92_11010 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_11010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EJN92_11040 PF00196 Bacterial regulatory proteins, luxR family EJN92_11040 PF00072 Response regulator receiver domain EJN92_11045 PF00989 PAS fold EJN92_11045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11045 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11050 PF00480 ROK family EJN92_11060 PF00005 ABC transporter EJN92_11060 PF17912 MalK OB fold domain EJN92_11065 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_11070 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_11080 PF07715 TonB-dependent Receptor Plug Domain EJN92_11080 PF00593 TonB dependent receptor EJN92_11100 PF01374 Glycosyl hydrolase family 46 EJN92_11105 PF01966 HD domain EJN92_11105 PF11871 Domain of unknown function (DUF3391) EJN92_11110 PF02803 Thiolase, C-terminal domain EJN92_11110 PF00108 Thiolase, N-terminal domain EJN92_11120 PF03591 AzlC protein EJN92_11130 PF00174 Oxidoreductase molybdopterin binding domain EJN92_11140 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11145 PF00654 Voltage gated chloride channel EJN92_11155 PF07690 Major Facilitator Superfamily EJN92_11165 PF12867 DinB superfamily EJN92_11165 PF03781 Sulfatase-modifying factor enzyme 1 EJN92_11170 PF10017 Histidine-specific methyltransferase, SAM-dependent EJN92_11175 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_11185 PF04337 Protein of unknown function, DUF480 EJN92_11190 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11190 PF13426 PAS domain EJN92_11190 PF13188 PAS domain EJN92_11190 PF00989 PAS fold EJN92_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_11200 PF00672 HAMP domain EJN92_11200 PF00072 Response regulator receiver domain EJN92_11200 PF01627 Hpt domain EJN92_11200 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11205 PF12282 Signal transduction histidine kinase EJN92_11205 PF07568 Histidine kinase EJN92_11225 PF07715 TonB-dependent Receptor Plug Domain EJN92_11225 PF00593 TonB dependent receptor EJN92_11230 PF03544 Gram-negative bacterial TonB protein C-terminal EJN92_11245 PF03466 LysR substrate binding domain EJN92_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_11250 PF12857 TOBE-like domain EJN92_11250 PF00005 ABC transporter EJN92_11250 PF17850 CysA C-terminal regulatory domain EJN92_11255 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_11260 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_11280 PF08220 DeoR-like helix-turn-helix domain EJN92_11280 PF00455 DeoR C terminal sensor domain EJN92_11285 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EJN92_11285 PF01266 FAD dependent oxidoreductase EJN92_11290 PF07690 Major Facilitator Superfamily EJN92_11300 PF05573 NosL EJN92_11305 PF12679 ABC-2 family transporter protein EJN92_11310 PF00005 ABC transporter EJN92_11315 PF05048 Periplasmic copper-binding protein (NosD) EJN92_11320 PF12801 4Fe-4S binding domain EJN92_11320 PF04205 FMN-binding domain EJN92_11325 PF13473 Cupredoxin-like domain EJN92_11325 PF18764 Nitrous oxide reductase propeller repeat EJN92_11325 PF18793 Nitrous oxide reductase propeller repeat 2 EJN92_11330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_11335 PF02424 ApbE family EJN92_11340 PF01590 GAF domain EJN92_11340 PF00563 EAL domain EJN92_11340 PF00360 Phytochrome region EJN92_11340 PF00990 Diguanylate cyclase, GGDEF domain EJN92_11395 PF00005 ABC transporter EJN92_11415 PF02308 MgtC family EJN92_11440 PF00009 Elongation factor Tu GTP binding domain EJN92_11440 PF03144 Elongation factor Tu domain 2 EJN92_11440 PF03143 Elongation factor Tu C-terminal domain EJN92_11455 PF02357 Transcription termination factor nusG EJN92_11455 PF00467 KOW motif EJN92_11460 PF00298 Ribosomal protein L11, RNA binding domain EJN92_11460 PF03946 Ribosomal protein L11, N-terminal domain EJN92_11465 PF00687 Ribosomal protein L1p/L10e family EJN92_11470 PF00466 Ribosomal protein L10 EJN92_11475 PF16320 Ribosomal protein L7/L12 dimerisation domain EJN92_11475 PF00542 Ribosomal protein L7/L12 C-terminal domain EJN92_11480 PF04565 RNA polymerase Rpb2, domain 3 EJN92_11480 PF04561 RNA polymerase Rpb2, domain 2 EJN92_11480 PF04563 RNA polymerase beta subunit EJN92_11480 PF00562 RNA polymerase Rpb2, domain 6 EJN92_11480 PF04560 RNA polymerase Rpb2, domain 7 EJN92_11480 PF10385 RNA polymerase beta subunit external 1 domain EJN92_11485 PF04998 RNA polymerase Rpb1, domain 5 EJN92_11485 PF05000 RNA polymerase Rpb1, domain 4 EJN92_11485 PF00623 RNA polymerase Rpb1, domain 2 EJN92_11485 PF04997 RNA polymerase Rpb1, domain 1 EJN92_11485 PF04983 RNA polymerase Rpb1, domain 3 EJN92_11490 PF03099 Biotin/lipoate A/B protein ligase family EJN92_11490 PF03309 Type III pantothenate kinase EJN92_11490 PF02237 Biotin protein ligase C terminal domain EJN92_11495 PF03309 Type III pantothenate kinase EJN92_11525 PF13302 Acetyltransferase (GNAT) domain EJN92_11530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_11530 PF03466 LysR substrate binding domain EJN92_11535 PF02525 Flavodoxin-like fold EJN92_11540 PF05726 Pirin C-terminal cupin domain EJN92_11540 PF02678 Pirin EJN92_11585 PF00067 Cytochrome P450 EJN92_11590 PF00793 DAHP synthetase I family EJN92_11605 PF05951 Bacterial protein of unknown function (DUF882) EJN92_11610 PF00365 Phosphofructokinase EJN92_11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11620 PF00989 PAS fold EJN92_11620 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EJN92_11630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EJN92_11635 PF01037 Lrp/AsnC ligand binding domain EJN92_11645 PF00578 AhpC/TSA family EJN92_11650 PF03358 NADPH-dependent FMN reductase EJN92_11675 PF13426 PAS domain EJN92_11675 PF00672 HAMP domain EJN92_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11675 PF00512 His Kinase A (phospho-acceptor) domain EJN92_11680 PF00690 Cation transporter/ATPase, N-terminus EJN92_11680 PF00689 Cation transporting ATPase, C-terminus EJN92_11690 PF16916 Dimerisation domain of Zinc Transporter EJN92_11690 PF01545 Cation efflux family EJN92_11730 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EJN92_11740 PF00326 Prolyl oligopeptidase family EJN92_11740 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EJN92_11750 PF03466 LysR substrate binding domain EJN92_11750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_11755 PF06299 Protein of unknown function (DUF1045) EJN92_11760 PF07969 Amidohydrolase family EJN92_11775 PF02253 Phospholipase A1 EJN92_11780 PF03793 PASTA domain EJN92_11780 PF00069 Protein kinase domain EJN92_11790 PF06508 Queuosine biosynthesis protein QueC EJN92_11830 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_11830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EJN92_11840 PF00255 Glutathione peroxidase EJN92_11845 PF01467 Cytidylyltransferase-like EJN92_11850 PF03707 Bacterial signalling protein N terminal repeat EJN92_11850 PF00990 Diguanylate cyclase, GGDEF domain EJN92_11850 PF00563 EAL domain EJN92_11860 PF00072 Response regulator receiver domain EJN92_11860 PF01339 CheB methylesterase EJN92_11865 PF03975 CheD chemotactic sensory transduction EJN92_11870 PF01739 CheR methyltransferase, SAM binding domain EJN92_11870 PF03705 CheR methyltransferase, all-alpha domain EJN92_11875 PF01584 CheW-like domain EJN92_11880 PF00672 HAMP domain EJN92_11880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_11885 PF07194 P2 response regulator binding domain EJN92_11885 PF01627 Hpt domain EJN92_11885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_11885 PF01584 CheW-like domain EJN92_11885 PF02895 Signal transducing histidine kinase, homodimeric domain EJN92_11895 PF00072 Response regulator receiver domain EJN92_11900 PF02743 Cache domain EJN92_11900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_11900 PF00672 HAMP domain EJN92_11905 PF00196 Bacterial regulatory proteins, luxR family EJN92_11905 PF00072 Response regulator receiver domain EJN92_11910 PF00588 SpoU rRNA Methylase family EJN92_11915 PF00156 Phosphoribosyl transferase domain EJN92_11920 PF08241 Methyltransferase domain EJN92_11925 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EJN92_11925 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EJN92_11930 PF00115 Cytochrome C and Quinol oxidase polypeptide I EJN92_11935 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 EJN92_11945 PF00510 Cytochrome c oxidase subunit III EJN92_11965 PF02628 Cytochrome oxidase assembly protein EJN92_11970 PF01040 UbiA prenyltransferase family EJN92_11975 PF02630 SCO1/SenC EJN92_11980 PF00140 Sigma-70 factor, region 1.2 EJN92_11980 PF04542 Sigma-70 region 2 EJN92_11980 PF04545 Sigma-70, region 4 EJN92_11985 PF18075 FtsX extracellular domain EJN92_11990 PF00005 ABC transporter EJN92_11995 PF00448 SRP54-type protein, GTPase domain EJN92_11995 PF02881 SRP54-type protein, helical bundle domain EJN92_12005 PF01467 Cytidylyltransferase-like EJN92_12010 PF00037 4Fe-4S binding domain EJN92_12015 PF07694 5TMR of 5TMR-LYT EJN92_12015 PF00990 Diguanylate cyclase, GGDEF domain EJN92_12020 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_12020 PF03473 MOSC domain EJN92_12020 PF03476 MOSC N-terminal beta barrel domain EJN92_12030 PF01926 50S ribosome-binding GTPase EJN92_12030 PF06071 Protein of unknown function (DUF933) EJN92_12035 PF01554 MatE EJN92_12065 PF01195 Peptidyl-tRNA hydrolase EJN92_12070 PF17760 UvrA interaction domain EJN92_12070 PF17755 UvrA DNA-binding domain EJN92_12075 PF07690 Major Facilitator Superfamily EJN92_12080 PF00436 Single-strand binding protein family EJN92_12090 PF17200 Single Cache domain 2 EJN92_12090 PF00672 HAMP domain EJN92_12090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_12100 PF00310 Glutamine amidotransferases class-II EJN92_12100 PF04898 Glutamate synthase central domain EJN92_12100 PF01645 Conserved region in glutamate synthase EJN92_12100 PF01493 GXGXG motif EJN92_12105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EJN92_12105 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_12110 PF00005 ABC transporter EJN92_12115 PF02405 Permease MlaE EJN92_12120 PF02470 MlaD protein EJN92_12140 PF00005 ABC transporter EJN92_12145 PF01061 ABC-2 type transporter EJN92_12150 PF01722 BolA-like protein EJN92_12155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EJN92_12160 PF01634 ATP phosphoribosyltransferase EJN92_12170 PF01555 DNA methylase EJN92_12180 PF00475 Imidazoleglycerol-phosphate dehydratase EJN92_12185 PF00117 Glutamine amidotransferase class-I EJN92_12190 PF00977 Histidine biosynthesis protein EJN92_12195 PF00977 Histidine biosynthesis protein EJN92_12200 PF01502 Phosphoribosyl-AMP cyclohydrolase EJN92_12205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EJN92_12215 PF02416 mttA/Hcf106 family EJN92_12220 PF02416 mttA/Hcf106 family EJN92_12225 PF00902 Sec-independent protein translocase protein (TatC) EJN92_12235 PF17820 PDZ domain EJN92_12235 PF13180 PDZ domain EJN92_12240 PF01784 NIF3 (NGG1p interacting factor 3) EJN92_12245 PF01741 Large-conductance mechanosensitive channel, MscL EJN92_12250 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EJN92_12250 PF00355 Rieske [2Fe-2S] domain EJN92_12255 PF00032 Cytochrome b(C-terminal)/b6/petD EJN92_12255 PF00033 Cytochrome b/b6/petB EJN92_12260 PF02167 Cytochrome C1 family EJN92_12265 PF02798 Glutathione S-transferase, N-terminal domain EJN92_12265 PF00043 Glutathione S-transferase, C-terminal domain EJN92_12270 PF04386 Stringent starvation protein B EJN92_12295 PF01609 Transposase DDE domain EJN92_12295 PF13006 Insertion element 4 transposase N-terminal EJN92_12305 PF02441 Flavoprotein EJN92_12310 PF00462 Glutaredoxin EJN92_12315 PF09371 Tex-like protein N-terminal domain EJN92_12315 PF00575 S1 RNA binding domain EJN92_12315 PF17674 HHH domain EJN92_12315 PF16921 Tex protein YqgF-like domain EJN92_12335 PF05175 Methyltransferase small domain EJN92_12335 PF17827 PrmC N-terminal domain EJN92_12340 PF02600 Disulfide bond formation protein DsbB EJN92_12345 PF00472 RF-1 domain EJN92_12345 PF03462 PCRF domain EJN92_12350 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EJN92_12350 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EJN92_12350 PF01488 Shikimate / quinate 5-dehydrogenase EJN92_12355 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_12355 PF00072 Response regulator receiver domain EJN92_12355 PF01627 Hpt domain EJN92_12355 PF00512 His Kinase A (phospho-acceptor) domain EJN92_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_12365 PF00072 Response regulator receiver domain EJN92_12365 PF00486 Transcriptional regulatory protein, C terminal EJN92_12370 PF03776 Septum formation topological specificity factor MinE EJN92_12375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EJN92_12380 PF03775 Septum formation inhibitor MinC, C-terminal domain EJN92_12380 PF05209 Septum formation inhibitor MinC, N-terminal domain EJN92_12390 PF01494 FAD binding domain EJN92_12395 PF10411 Disulfide bond isomerase protein N-terminus EJN92_12395 PF13098 Thioredoxin-like domain EJN92_12415 PF00218 Indole-3-glycerol phosphate synthase EJN92_12420 PF02885 Glycosyl transferase family, helical bundle domain EJN92_12420 PF00591 Glycosyl transferase family, a/b domain EJN92_12425 PF00117 Glutamine amidotransferase class-I EJN92_12430 PF00425 chorismate binding enzyme EJN92_12430 PF04715 Anthranilate synthase component I, N terminal region EJN92_12435 PF13419 Haloacid dehalogenase-like hydrolase EJN92_12440 PF00834 Ribulose-phosphate 3 epimerase family EJN92_12445 PF04379 ApaG domain EJN92_12450 PF06725 3D domain EJN92_12450 PF03562 MltA specific insert domain EJN92_12455 PF00378 Enoyl-CoA hydratase/isomerase EJN92_12485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EJN92_12485 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EJN92_12490 PF01568 Molydopterin dinucleotide binding domain EJN92_12490 PF00384 Molybdopterin oxidoreductase EJN92_12490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EJN92_12495 PF13193 AMP-binding enzyme C-terminal domain EJN92_12495 PF00501 AMP-binding enzyme EJN92_12500 PF13193 AMP-binding enzyme C-terminal domain EJN92_12500 PF00501 AMP-binding enzyme EJN92_12505 PF03668 P-loop ATPase protein family EJN92_12510 PF02603 HPr Serine kinase N terminus EJN92_12510 PF07475 HPr Serine kinase C-terminal domain EJN92_12515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EJN92_12520 PF13426 PAS domain EJN92_12520 PF00990 Diguanylate cyclase, GGDEF domain EJN92_12520 PF00563 EAL domain EJN92_12530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EJN92_12530 PF14489 QueF-like protein EJN92_12535 PF00585 C-terminal regulatory domain of Threonine dehydratase EJN92_12535 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_12540 PF09335 SNARE associated Golgi protein EJN92_12560 PF01209 ubiE/COQ5 methyltransferase family EJN92_12575 PF03109 ABC1 family EJN92_12580 PF05724 Thiopurine S-methyltransferase (TPMT) EJN92_12590 PF04471 Restriction endonuclease EJN92_12590 PF14338 Mrr N-terminal domain EJN92_12605 PF02682 Carboxyltransferase domain, subdomain C and D EJN92_12610 PF02626 Carboxyltransferase domain, subdomain A and B EJN92_12615 PF03746 LamB/YcsF family EJN92_12630 PF01470 Pyroglutamyl peptidase EJN92_12635 PF00672 HAMP domain EJN92_12635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_12635 PF00512 His Kinase A (phospho-acceptor) domain EJN92_12655 PF01336 OB-fold nucleic acid binding domain EJN92_12655 PF00152 tRNA synthetases class II (D, K and N) EJN92_12655 PF02938 GAD domain EJN92_12660 PF00293 NUDIX domain EJN92_12665 PF03372 Endonuclease/Exonuclease/phosphatase family EJN92_12670 PF13091 PLD-like domain EJN92_12675 PF00512 His Kinase A (phospho-acceptor) domain EJN92_12675 PF00989 PAS fold EJN92_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_12675 PF00672 HAMP domain EJN92_12675 PF18698 Histidine kinase sensor domain EJN92_12680 PF01479 S4 domain EJN92_12690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_12690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_12690 PF12806 Acetyl-CoA dehydrogenase C-terminal like EJN92_12690 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_12695 PF00378 Enoyl-CoA hydratase/isomerase EJN92_12695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EJN92_12695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EJN92_12700 PF00108 Thiolase, N-terminal domain EJN92_12700 PF02803 Thiolase, C-terminal domain EJN92_12710 PF00378 Enoyl-CoA hydratase/isomerase EJN92_12715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EJN92_12715 PF00205 Thiamine pyrophosphate enzyme, central domain EJN92_12715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EJN92_12725 PF00563 EAL domain EJN92_12725 PF00990 Diguanylate cyclase, GGDEF domain EJN92_12725 PF03707 Bacterial signalling protein N terminal repeat EJN92_12730 PF02381 MraZ protein, putative antitoxin-like EJN92_12735 PF01795 MraW methylase family EJN92_12745 PF03717 Penicillin-binding Protein dimerisation domain EJN92_12745 PF00905 Penicillin binding protein transpeptidase domain EJN92_12750 PF02875 Mur ligase family, glutamate ligase domain EJN92_12750 PF08245 Mur ligase middle domain EJN92_12750 PF01225 Mur ligase family, catalytic domain EJN92_12755 PF08245 Mur ligase middle domain EJN92_12755 PF01225 Mur ligase family, catalytic domain EJN92_12755 PF02875 Mur ligase family, glutamate ligase domain EJN92_12760 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EJN92_12760 PF00953 Glycosyl transferase family 4 EJN92_12765 PF02875 Mur ligase family, glutamate ligase domain EJN92_12765 PF08245 Mur ligase middle domain EJN92_12770 PF01098 Cell cycle protein EJN92_12775 PF04101 Glycosyltransferase family 28 C-terminal domain EJN92_12775 PF03033 Glycosyltransferase family 28 N-terminal domain EJN92_12780 PF02875 Mur ligase family, glutamate ligase domain EJN92_12780 PF08245 Mur ligase middle domain EJN92_12780 PF01225 Mur ligase family, catalytic domain EJN92_12785 PF01820 D-ala D-ala ligase N-terminus EJN92_12785 PF07478 D-ala D-ala ligase C-terminus EJN92_12790 PF03799 Cell division protein FtsQ EJN92_12790 PF08478 POTRA domain, FtsQ-type EJN92_12795 PF02491 SHS2 domain inserted in FTSA EJN92_12800 PF00091 Tubulin/FtsZ family, GTPase domain EJN92_12800 PF12327 FtsZ family, C-terminal domain EJN92_12805 PF08534 Redoxin EJN92_12810 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EJN92_12820 PF01464 Transglycosylase SLT domain EJN92_12820 PF10145 Phage-related minor tail protein EJN92_12820 PF01551 Peptidase family M23 EJN92_12825 PF07516 SecA Wing and Scaffold domain EJN92_12825 PF02810 SEC-C motif EJN92_12825 PF07517 SecA DEAD-like domain EJN92_12825 PF01043 SecA preprotein cross-linking domain EJN92_12835 PF03707 Bacterial signalling protein N terminal repeat EJN92_12835 PF00990 Diguanylate cyclase, GGDEF domain EJN92_12835 PF00563 EAL domain EJN92_12840 PF01047 MarR family EJN92_12845 PF04264 YceI-like domain EJN92_12855 PF01292 Prokaryotic cytochrome b561 EJN92_12860 PF07715 TonB-dependent Receptor Plug Domain EJN92_12860 PF00593 TonB dependent receptor EJN92_12865 PF00206 Lyase EJN92_12865 PF08328 Adenylosuccinate lyase C-terminal EJN92_12870 PF00043 Glutathione S-transferase, C-terminal domain EJN92_12870 PF13417 Glutathione S-transferase, N-terminal domain EJN92_12875 PF00210 Ferritin-like domain EJN92_12885 PF04324 BFD-like [2Fe-2S] binding domain EJN92_12900 PF02666 Phosphatidylserine decarboxylase EJN92_12905 PF01966 HD domain EJN92_12905 PF11871 Domain of unknown function (DUF3391) EJN92_12910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_12910 PF00512 His Kinase A (phospho-acceptor) domain EJN92_12910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_12910 PF00672 HAMP domain EJN92_12910 PF00072 Response regulator receiver domain EJN92_12910 PF01627 Hpt domain EJN92_12915 PF00578 AhpC/TSA family EJN92_12920 PF02627 Carboxymuconolactone decarboxylase family EJN92_12935 PF00293 NUDIX domain EJN92_12940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EJN92_12940 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EJN92_12945 PF02261 Aspartate decarboxylase EJN92_12950 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EJN92_12955 PF02233 NAD(P) transhydrogenase beta subunit EJN92_12965 PF00293 NUDIX domain EJN92_12970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EJN92_12970 PF03129 Anticodon binding domain EJN92_12970 PF04073 Aminoacyl-tRNA editing domain EJN92_12975 PF01464 Transglycosylase SLT domain EJN92_12975 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain EJN92_12990 PF00448 SRP54-type protein, GTPase domain EJN92_12990 PF02881 SRP54-type protein, helical bundle domain EJN92_12990 PF02978 Signal peptide binding domain EJN92_13005 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_13010 PF00005 ABC transporter EJN92_13015 PF02743 Cache domain EJN92_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_13015 PF00512 His Kinase A (phospho-acceptor) domain EJN92_13020 PF00158 Sigma-54 interaction domain EJN92_13020 PF02954 Bacterial regulatory protein, Fis family EJN92_13020 PF00072 Response regulator receiver domain EJN92_13030 PF03061 Thioesterase superfamily EJN92_13035 PF00005 ABC transporter EJN92_13035 PF00664 ABC transporter transmembrane region EJN92_13040 PF13458 Periplasmic binding protein EJN92_13045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_13045 PF03466 LysR substrate binding domain EJN92_13050 PF05088 Bacterial NAD-glutamate dehydrogenase EJN92_13060 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_13065 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_13070 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_13075 PF00005 ABC transporter EJN92_13080 PF01979 Amidohydrolase family EJN92_13100 PF08264 Anticodon-binding domain of tRNA EJN92_13100 PF00133 tRNA synthetases class I (I, L, M and V) EJN92_13100 PF10458 Valyl tRNA synthetase tRNA binding arm EJN92_13105 PF01578 Cytochrome C assembly protein EJN92_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_13115 PF00512 His Kinase A (phospho-acceptor) domain EJN92_13120 PF00158 Sigma-54 interaction domain EJN92_13120 PF00072 Response regulator receiver domain EJN92_13120 PF02954 Bacterial regulatory protein, Fis family EJN92_13125 PF01510 N-acetylmuramoyl-L-alanine amidase EJN92_13135 PF00675 Insulinase (Peptidase family M16) EJN92_13135 PF05193 Peptidase M16 inactive domain EJN92_13140 PF01812 5-formyltetrahydrofolate cyclo-ligase family EJN92_13145 PF01464 Transglycosylase SLT domain EJN92_13145 PF14718 Soluble lytic murein transglycosylase L domain EJN92_13155 PF01966 HD domain EJN92_13155 PF01743 Poly A polymerase head domain EJN92_13155 PF12627 Probable RNA and SrmB- binding site of polymerase A EJN92_13175 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding EJN92_13175 PF18381 YcaO cyclodehydratase C-terminal domain EJN92_13185 PF03301 Tryptophan 2,3-dioxygenase EJN92_13190 PF00266 Aminotransferase class-V EJN92_13195 PF04199 Putative cyclase EJN92_13200 PF01037 Lrp/AsnC ligand binding domain EJN92_13205 PF00239 Resolvase, N terminal domain EJN92_13205 PF02796 Helix-turn-helix domain of resolvase EJN92_13210 PF08007 Cupin superfamily protein EJN92_13220 PF02075 Crossover junction endodeoxyribonuclease RuvC EJN92_13225 PF02142 MGS-like domain EJN92_13225 PF01808 AICARFT/IMPCHase bienzyme EJN92_13230 PF02954 Bacterial regulatory protein, Fis family EJN92_13235 PF01207 Dihydrouridine synthase (Dus) EJN92_13240 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_13245 PF00072 Response regulator receiver domain EJN92_13250 PF00300 Histidine phosphatase superfamily (branch 1) EJN92_13255 PF02580 D-Tyr-tRNA(Tyr) deacylase EJN92_13260 PF01479 S4 domain EJN92_13260 PF00579 tRNA synthetases class I (W and Y) EJN92_13265 PF01551 Peptidase family M23 EJN92_13270 PF03702 Anhydro-N-acetylmuramic acid kinase EJN92_13280 PF00155 Aminotransferase class I and II EJN92_13285 PF00248 Aldo/keto reductase family EJN92_13290 PF03707 Bacterial signalling protein N terminal repeat EJN92_13290 PF00563 EAL domain EJN92_13290 PF00990 Diguanylate cyclase, GGDEF domain EJN92_13295 PF03466 LysR substrate binding domain EJN92_13295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_13300 PF01923 Cobalamin adenosyltransferase EJN92_13305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EJN92_13305 PF02779 Transketolase, pyrimidine binding domain EJN92_13305 PF02780 Transketolase, C-terminal domain EJN92_13310 PF00348 Polyprenyl synthetase EJN92_13315 PF02609 Exonuclease VII small subunit EJN92_13325 PF03280 Proteobacterial lipase chaperone protein EJN92_13330 PF00561 alpha/beta hydrolase fold EJN92_13345 PF00581 Rhodanese-like domain EJN92_13355 PF00255 Glutathione peroxidase EJN92_13360 PF00437 Type II/IV secretion system protein EJN92_13365 PF00437 Type II/IV secretion system protein EJN92_13370 PF01168 Alanine racemase, N-terminal domain EJN92_13375 PF03807 NADP oxidoreductase coenzyme F420-dependent EJN92_13375 PF14748 Pyrroline-5-carboxylate reductase dimerisation EJN92_13390 PF05957 Bacterial protein of unknown function (DUF883) EJN92_13395 PF01040 UbiA prenyltransferase family EJN92_13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_13400 PF03466 LysR substrate binding domain EJN92_13405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_13405 PF00512 His Kinase A (phospho-acceptor) domain EJN92_13410 PF00106 short chain dehydrogenase EJN92_13420 PF00270 DEAD/DEAH box helicase EJN92_13420 PF00271 Helicase conserved C-terminal domain EJN92_13420 PF17191 RecG wedge domain EJN92_13425 PF02547 Queuosine biosynthesis protein EJN92_13430 PF01702 Queuine tRNA-ribosyltransferase EJN92_13435 PF02699 Preprotein translocase subunit EJN92_13440 PF07549 SecD/SecF GG Motif EJN92_13440 PF13721 SecD export protein N-terminal TM region EJN92_13440 PF02355 Protein export membrane protein EJN92_13445 PF07549 SecD/SecF GG Motif EJN92_13445 PF02355 Protein export membrane protein EJN92_13450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_13455 PF00873 AcrB/AcrD/AcrF family EJN92_13460 PF01960 ArgJ family EJN92_13470 PF00293 NUDIX domain EJN92_13480 PF03167 Uracil DNA glycosylase superfamily EJN92_13495 PF12852 Cupin EJN92_13495 PF12833 Helix-turn-helix domain EJN92_13500 PF02683 Cytochrome C biogenesis protein transmembrane region EJN92_13500 PF17991 Thioredoxin like C-terminal domain EJN92_13500 PF00578 AhpC/TSA family EJN92_13520 PF13005 zinc-finger binding domain of transposase IS66 EJN92_13520 PF13817 IS66 C-terminal element EJN92_13520 PF03050 Transposase IS66 family EJN92_13520 PF13007 Transposase C of IS166 homeodomain EJN92_13525 PF06778 Chlorite dismutase EJN92_13530 PF03466 LysR substrate binding domain EJN92_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_13555 PF02899 Phage integrase, N-terminal SAM-like domain EJN92_13555 PF00589 Phage integrase family EJN92_13565 PF03707 Bacterial signalling protein N terminal repeat EJN92_13565 PF00990 Diguanylate cyclase, GGDEF domain EJN92_13565 PF00563 EAL domain EJN92_13585 PF01168 Alanine racemase, N-terminal domain EJN92_13585 PF00842 Alanine racemase, C-terminal domain EJN92_13590 PF01266 FAD dependent oxidoreductase EJN92_13600 PF00158 Sigma-54 interaction domain EJN92_13600 PF18024 Helix-turn-helix domain EJN92_13605 PF03884 DNA gyrase inhibitor YacG EJN92_13610 PF07072 Cell division protein EJN92_13615 PF01121 Dephospho-CoA kinase EJN92_13620 PF01478 Type IV leader peptidase family EJN92_13620 PF06750 Bacterial Peptidase A24 N-terminal domain EJN92_13625 PF00482 Type II secretion system (T2SS), protein F EJN92_13630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EJN92_13630 PF00437 Type II/IV secretion system protein EJN92_13635 PF00348 Polyprenyl synthetase EJN92_13645 PF00829 Ribosomal prokaryotic L21 protein EJN92_13650 PF01016 Ribosomal L27 protein EJN92_13655 PF01926 50S ribosome-binding GTPase EJN92_13655 PF01018 GTP1/OBG EJN92_13660 PF01494 FAD binding domain EJN92_13665 PF05195 Aminopeptidase P, N-terminal domain EJN92_13665 PF00557 Metallopeptidase family M24 EJN92_13670 PF00483 Nucleotidyl transferase EJN92_13675 PF01636 Phosphotransferase enzyme family EJN92_13680 PF04453 LPS transport system D EJN92_13685 PF00639 PPIC-type PPIASE domain EJN92_13685 PF09312 SurA N-terminal domain EJN92_13690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EJN92_13695 PF00398 Ribosomal RNA adenine dimethylase EJN92_13700 PF00342 Phosphoglucose isomerase EJN92_13705 PF00106 short chain dehydrogenase EJN92_13710 PF03061 Thioesterase superfamily EJN92_13715 PF01618 MotA/TolQ/ExbB proton channel family EJN92_13720 PF02472 Biopolymer transport protein ExbD/TolR EJN92_13730 PF04357 TamB, inner membrane protein subunit of TAM complex EJN92_13740 PF04052 TolB amino-terminal domain EJN92_13740 PF07676 WD40-like Beta Propeller Repeat EJN92_13745 PF00691 OmpA family EJN92_13770 PF02541 Ppx/GppA phosphatase family EJN92_13775 PF09423 PhoD-like phosphatase EJN92_13775 PF16655 PhoD-like phosphatase, N-terminal domain EJN92_13785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EJN92_13785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_13785 PF00034 Cytochrome c EJN92_13790 PF01594 AI-2E family transporter EJN92_13800 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_13800 PF00512 His Kinase A (phospho-acceptor) domain EJN92_13800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_13805 PF00672 HAMP domain EJN92_13805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_13805 PF02203 Tar ligand binding domain homologue EJN92_13810 PF00005 ABC transporter EJN92_13820 PF13472 GDSL-like Lipase/Acylhydrolase family EJN92_13830 PF00072 Response regulator receiver domain EJN92_13830 PF00486 Transcriptional regulatory protein, C terminal EJN92_13835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_13835 PF00672 HAMP domain EJN92_13835 PF00512 His Kinase A (phospho-acceptor) domain EJN92_13840 PF06906 Protein of unknown function (DUF1272) EJN92_13845 PF01965 DJ-1/PfpI family EJN92_13850 PF00696 Amino acid kinase family EJN92_13850 PF01472 PUA domain EJN92_13855 PF00491 Arginase family EJN92_13860 PF02423 Ornithine cyclodeaminase/mu-crystallin family EJN92_13865 PF01037 Lrp/AsnC ligand binding domain EJN92_13870 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase EJN92_13880 PF03594 Benzoate membrane transport protein EJN92_13885 PF00155 Aminotransferase class I and II EJN92_13885 PF00392 Bacterial regulatory proteins, gntR family EJN92_13890 PF00361 Proton-conducting membrane transporter EJN92_13890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EJN92_13890 PF13244 Domain of unknown function (DUF4040) EJN92_13890 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EJN92_13895 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EJN92_13900 PF00361 Proton-conducting membrane transporter EJN92_13905 PF01899 Na+/H+ ion antiporter subunit EJN92_13910 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EJN92_13915 PF03334 Na+/H+ antiporter subunit EJN92_13920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family EJN92_13930 PF13419 Haloacid dehalogenase-like hydrolase EJN92_13940 PF00691 OmpA family EJN92_13945 PF03989 DNA gyrase C-terminal domain, beta-propeller EJN92_13945 PF00521 DNA gyrase/topoisomerase IV, subunit A EJN92_13950 PF00266 Aminotransferase class-V EJN92_13955 PF00800 Prephenate dehydratase EJN92_13955 PF01842 ACT domain EJN92_13955 PF01817 Chorismate mutase type II EJN92_13960 PF02153 Prephenate dehydrogenase EJN92_13960 PF01842 ACT domain EJN92_13965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EJN92_13970 PF02224 Cytidylate kinase EJN92_13975 PF00575 S1 RNA binding domain EJN92_13980 PF00216 Bacterial DNA-binding protein EJN92_13990 PF18073 Rubredoxin metal binding domain EJN92_13995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EJN92_13995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EJN92_13995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EJN92_14000 PF00294 pfkB family carbohydrate kinase EJN92_14010 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_14020 PF08298 PrkA AAA domain EJN92_14020 PF06798 PrkA serine protein kinase C-terminal domain EJN92_14025 PF04285 Protein of unknown function (DUF444) EJN92_14030 PF04293 SpoVR like protein EJN92_14045 PF13411 MerR HTH family regulatory protein EJN92_14050 PF01914 MarC family integral membrane protein EJN92_14055 PF13520 Amino acid permease EJN92_14060 PF05981 CreA protein EJN92_14085 PF02638 Glycosyl hydrolase-like 10 EJN92_14100 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_14105 PF00005 ABC transporter EJN92_14105 PF08402 TOBE domain EJN92_14110 PF00296 Luciferase-like monooxygenase EJN92_14155 PF01161 Phosphatidylethanolamine-binding protein EJN92_14175 PF00561 alpha/beta hydrolase fold EJN92_14175 PF00364 Biotin-requiring enzyme EJN92_14210 PF02687 FtsX-like permease family EJN92_14210 PF12704 MacB-like periplasmic core domain EJN92_14215 PF00005 ABC transporter EJN92_14250 PF02867 Ribonucleotide reductase, barrel domain EJN92_14250 PF03477 ATP cone domain EJN92_14250 PF00317 Ribonucleotide reductase, all-alpha domain EJN92_14260 PF00326 Prolyl oligopeptidase family EJN92_14260 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EJN92_14265 PF07715 TonB-dependent Receptor Plug Domain EJN92_14265 PF00593 TonB dependent receptor EJN92_14270 PF13640 2OG-Fe(II) oxygenase superfamily EJN92_14270 PF18331 PKHD-type hydroxylase C-terminal domain EJN92_14275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EJN92_14275 PF00534 Glycosyl transferases group 1 EJN92_14285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EJN92_14290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EJN92_14290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EJN92_14290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EJN92_14290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EJN92_14295 PF02719 Polysaccharide biosynthesis protein EJN92_14300 PF02397 Bacterial sugar transferase EJN92_14305 PF01370 NAD dependent epimerase/dehydratase family EJN92_14310 PF01025 GrpE EJN92_14315 PF00012 Hsp70 protein EJN92_14320 PF01556 DnaJ C terminal domain EJN92_14320 PF00684 DnaJ central domain EJN92_14320 PF00226 DnaJ domain EJN92_14325 PF10609 NUBPL iron-transfer P-loop NTPase EJN92_14330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EJN92_14330 PF01872 RibD C-terminal domain EJN92_14345 PF00849 RNA pseudouridylate synthase EJN92_14345 PF01479 S4 domain EJN92_14375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EJN92_14375 PF00384 Molybdopterin oxidoreductase EJN92_14375 PF01568 Molydopterin dinucleotide binding domain EJN92_14380 PF13247 4Fe-4S dicluster domain EJN92_14390 PF01292 Prokaryotic cytochrome b561 EJN92_14400 PF02634 FdhD/NarQ family EJN92_14405 PF00749 tRNA synthetases class I (E and Q), catalytic domain EJN92_14435 PF00075 RNase H EJN92_14440 PF01209 ubiE/COQ5 methyltransferase family EJN92_14445 PF00753 Metallo-beta-lactamase superfamily EJN92_14445 PF16123 Hydroxyacylglutathione hydrolase C-terminus EJN92_14455 PF09285 Elongation factor P, C-terminal EJN92_14455 PF08207 Elongation factor P (EF-P) KOW-like domain EJN92_14455 PF01132 Elongation factor P (EF-P) OB domain EJN92_14470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_14475 PF00005 ABC transporter EJN92_14480 PF02687 FtsX-like permease family EJN92_14480 PF00005 ABC transporter EJN92_14480 PF12704 MacB-like periplasmic core domain EJN92_14485 PF12704 MacB-like periplasmic core domain EJN92_14485 PF02687 FtsX-like permease family EJN92_14495 PF03171 2OG-Fe(II) oxygenase superfamily EJN92_14495 PF14226 non-haem dioxygenase in morphine synthesis N-terminal EJN92_14500 PF01156 Inosine-uridine preferring nucleoside hydrolase EJN92_14525 PF00294 pfkB family carbohydrate kinase EJN92_14540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EJN92_14540 PF00289 Biotin carboxylase, N-terminal domain EJN92_14540 PF02785 Biotin carboxylase C-terminal domain EJN92_14545 PF00364 Biotin-requiring enzyme EJN92_14550 PF01220 Dehydroquinase class II EJN92_14555 PF08534 Redoxin EJN92_14565 PF08245 Mur ligase middle domain EJN92_14565 PF01225 Mur ligase family, catalytic domain EJN92_14565 PF02875 Mur ligase family, glutamate ligase domain EJN92_14570 PF05728 Uncharacterised protein family (UPF0227) EJN92_14575 PF04345 Chorismate lyase EJN92_14580 PF00773 RNB domain EJN92_14590 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EJN92_14590 PF08501 Shikimate dehydrogenase substrate binding domain EJN92_14590 PF01488 Shikimate / quinate 5-dehydrogenase EJN92_14595 PF00912 Transglycosylase EJN92_14605 PF01544 CorA-like Mg2+ transporter protein EJN92_14610 PF00664 ABC transporter transmembrane region EJN92_14610 PF00005 ABC transporter EJN92_14610 PF03412 Peptidase C39 family EJN92_14615 PF00529 HlyD membrane-fusion protein of T1SS EJN92_14615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_14630 PF01261 Xylose isomerase-like TIM barrel EJN92_14635 PF00563 EAL domain EJN92_14635 PF12792 CSS motif domain associated with EAL EJN92_14645 PF02321 Outer membrane efflux protein EJN92_14650 PF00202 Aminotransferase class-III EJN92_14655 PF08543 Phosphomethylpyrimidine kinase EJN92_14660 PF00301 Rubredoxin EJN92_14665 PF00072 Response regulator receiver domain EJN92_14670 PF00072 Response regulator receiver domain EJN92_14680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_14680 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EJN92_14685 PF01627 Hpt domain EJN92_14685 PF07194 P2 response regulator binding domain EJN92_14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_14685 PF01584 CheW-like domain EJN92_14685 PF02895 Signal transducing histidine kinase, homodimeric domain EJN92_14685 PF01584 CheW-like domain EJN92_14685 PF02895 Signal transducing histidine kinase, homodimeric domain EJN92_14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_14685 PF01627 Hpt domain EJN92_14685 PF07194 P2 response regulator binding domain EJN92_14690 PF03441 FAD binding domain of DNA photolyase EJN92_14690 PF00875 DNA photolyase EJN92_14695 PF02622 Uncharacterized ACR, COG1678 EJN92_14700 PF03652 Holliday junction resolvase EJN92_14705 PF00156 Phosphoribosyl transferase domain EJN92_14710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EJN92_14710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EJN92_14715 PF01979 Amidohydrolase family EJN92_14720 PF01553 Acyltransferase EJN92_14725 PF00149 Calcineurin-like phosphoesterase EJN92_14730 PF00762 Ferrochelatase EJN92_14735 PF02463 RecF/RecN/SMC N terminal domain EJN92_14740 PF01513 ATP-NAD kinase EJN92_14750 PF01628 HrcA protein C terminal domain EJN92_14750 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EJN92_14755 PF00072 Response regulator receiver domain EJN92_14760 PF01475 Ferric uptake regulator family EJN92_14765 PF04355 SmpA / OmlA family EJN92_14770 PF01113 Dihydrodipicolinate reductase, N-terminus EJN92_14770 PF05173 Dihydrodipicolinate reductase, C-terminus EJN92_14775 PF01618 MotA/TolQ/ExbB proton channel family EJN92_14780 PF02472 Biopolymer transport protein ExbD/TolR EJN92_14785 PF09334 tRNA synthetases class I (M) EJN92_14785 PF08264 Anticodon-binding domain of tRNA EJN92_14785 PF13603 Leucyl-tRNA synthetase, Domain 2 EJN92_14800 PF00171 Aldehyde dehydrogenase family EJN92_14815 PF01170 Putative RNA methylase family UPF0020 EJN92_14815 PF02926 THUMP domain EJN92_14820 PF07690 Major Facilitator Superfamily EJN92_14825 PF13609 Gram-negative porin EJN92_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_14845 PF00072 Response regulator receiver domain EJN92_14845 PF01627 Hpt domain EJN92_14845 PF00989 PAS fold EJN92_14845 PF18415 Histidine kinase receptor ArcB trans-membrane domain EJN92_14845 PF00512 His Kinase A (phospho-acceptor) domain EJN92_14855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EJN92_14855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EJN92_14860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EJN92_14860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EJN92_14860 PF00378 Enoyl-CoA hydratase/isomerase EJN92_14865 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_14865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_14865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_14870 PF00171 Aldehyde dehydrogenase family EJN92_14885 PF12849 PBP superfamily domain EJN92_14915 PF02503 Polyphosphate kinase middle domain EJN92_14915 PF13090 Polyphosphate kinase C-terminal domain 2 EJN92_14915 PF17941 Polyphosphate kinase C-terminal domain 1 EJN92_14915 PF13089 Polyphosphate kinase N-terminal domain EJN92_14920 PF12849 PBP superfamily domain EJN92_14925 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_14930 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_14935 PF00005 ABC transporter EJN92_14940 PF01895 PhoU domain EJN92_14945 PF00486 Transcriptional regulatory protein, C terminal EJN92_14945 PF00072 Response regulator receiver domain EJN92_14950 PF00989 PAS fold EJN92_14950 PF11808 Phosphate regulon sensor protein PhoR EJN92_14950 PF00512 His Kinase A (phospho-acceptor) domain EJN92_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_14955 PF01321 Creatinase/Prolidase N-terminal domain EJN92_14955 PF00557 Metallopeptidase family M24 EJN92_14965 PF08264 Anticodon-binding domain of tRNA EJN92_14965 PF01588 Putative tRNA binding domain EJN92_14965 PF09334 tRNA synthetases class I (M) EJN92_14975 PF00814 Glycoprotease family EJN92_14980 PF03861 ANTAR domain EJN92_14980 PF08376 Nitrate and nitrite sensing EJN92_14990 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_14995 PF00005 ABC transporter EJN92_15000 PF03352 Methyladenine glycosylase EJN92_15020 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EJN92_15030 PF00586 AIR synthase related protein, N-terminal domain EJN92_15030 PF02769 AIR synthase related protein, C-terminal domain EJN92_15035 PF00308 Bacterial dnaA protein EJN92_15035 PF08299 Bacterial dnaA protein helix-turn-helix EJN92_15045 PF12627 Probable RNA and SrmB- binding site of polymerase A EJN92_15045 PF12626 Polymerase A arginine-rich C-terminus EJN92_15045 PF01743 Poly A polymerase head domain EJN92_15050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EJN92_15060 PF02548 Ketopantoate hydroxymethyltransferase EJN92_15065 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_15070 PF00005 ABC transporter EJN92_15090 PF00484 Carbonic anhydrase EJN92_15105 PF02653 Branched-chain amino acid transport system / permease component EJN92_15110 PF02653 Branched-chain amino acid transport system / permease component EJN92_15115 PF00005 ABC transporter EJN92_15115 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_15120 PF00005 ABC transporter EJN92_15125 PF01774 UreD urease accessory protein EJN92_15130 PF00547 Urease, gamma subunit EJN92_15135 PF00699 Urease beta subunit EJN92_15140 PF00449 Urease alpha-subunit, N-terminal domain EJN92_15140 PF01979 Amidohydrolase family EJN92_15145 PF02814 UreE urease accessory protein, N-terminal domain EJN92_15145 PF05194 UreE urease accessory protein, C-terminal domain EJN92_15150 PF01730 UreF EJN92_15155 PF02492 CobW/HypB/UreG, nucleotide-binding domain EJN92_15160 PF04955 HupE / UreJ protein EJN92_15165 PF03572 Peptidase family S41 EJN92_15165 PF17804 Tail specific protease N-terminal domain EJN92_15165 PF00595 PDZ domain EJN92_15165 PF11818 C-terminal domain of tail specific protease (DUF3340) EJN92_15185 PF13396 Phospholipase_D-nuclease N-terminal EJN92_15185 PF13091 PLD-like domain EJN92_15210 PF00664 ABC transporter transmembrane region EJN92_15210 PF00005 ABC transporter EJN92_15245 PF00749 tRNA synthetases class I (E and Q), catalytic domain EJN92_15245 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EJN92_15265 PF13673 Acetyltransferase (GNAT) domain EJN92_15270 PF04397 LytTr DNA-binding domain EJN92_15270 PF00072 Response regulator receiver domain EJN92_15275 PF06580 Histidine kinase EJN92_15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_15275 PF07694 5TMR of 5TMR-LYT EJN92_15285 PF03009 Glycerophosphoryl diester phosphodiesterase family EJN92_15295 PF01411 tRNA synthetases class II (A) EJN92_15295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EJN92_15295 PF02272 DHHA1 domain EJN92_15300 PF00583 Acetyltransferase (GNAT) family EJN92_15305 PF00293 NUDIX domain EJN92_15305 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain EJN92_15305 PF09297 NADH pyrophosphatase zinc ribbon domain EJN92_15310 PF01206 Sulfurtransferase TusA EJN92_15315 PF01012 Electron transfer flavoprotein domain EJN92_15320 PF01012 Electron transfer flavoprotein domain EJN92_15320 PF00766 Electron transfer flavoprotein FAD-binding domain EJN92_15325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_15325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_15325 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_15325 PF12806 Acetyl-CoA dehydrogenase C-terminal like EJN92_15335 PF00886 Ribosomal protein S16 EJN92_15340 PF01782 RimM N-terminal domain EJN92_15340 PF05239 PRC-barrel domain EJN92_15345 PF01746 tRNA (Guanine-1)-methyltransferase EJN92_15350 PF01245 Ribosomal protein L19 EJN92_15355 PF00293 NUDIX domain EJN92_15360 PF03186 CobD/Cbib protein EJN92_15360 PF17113 Regulatory signalling modulator protein AmpE EJN92_15370 PF01195 Peptidyl-tRNA hydrolase EJN92_15375 PF01195 Peptidyl-tRNA hydrolase EJN92_15385 PF03466 LysR substrate binding domain EJN92_15385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_15395 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_15395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_15395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_15400 PF00501 AMP-binding enzyme EJN92_15400 PF13193 AMP-binding enzyme C-terminal domain EJN92_15405 PF00486 Transcriptional regulatory protein, C terminal EJN92_15405 PF00072 Response regulator receiver domain EJN92_15410 PF00672 HAMP domain EJN92_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_15410 PF00512 His Kinase A (phospho-acceptor) domain EJN92_15420 PF00563 EAL domain EJN92_15420 PF00990 Diguanylate cyclase, GGDEF domain EJN92_15420 PF08448 PAS fold EJN92_15425 PF12697 Alpha/beta hydrolase family EJN92_15430 PF00005 ABC transporter EJN92_15435 PF04074 YhcH/YjgK/YiaL EJN92_15440 PF04011 LemA family EJN92_15445 PF04536 TPM domain EJN92_15470 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_15470 PF00175 Oxidoreductase NAD-binding domain EJN92_15490 PF01343 Peptidase family S49 EJN92_15510 PF00005 ABC transporter EJN92_15515 PF01061 ABC-2 type transporter EJN92_15520 PF03144 Elongation factor Tu domain 2 EJN92_15520 PF16658 Class II release factor RF3, C-terminal domain EJN92_15520 PF00009 Elongation factor Tu GTP binding domain EJN92_15525 PF00596 Class II Aldolase and Adducin N-terminal domain EJN92_15550 PF01618 MotA/TolQ/ExbB proton channel family EJN92_15555 PF02472 Biopolymer transport protein ExbD/TolR EJN92_15560 PF02472 Biopolymer transport protein ExbD/TolR EJN92_15570 PF00392 Bacterial regulatory proteins, gntR family EJN92_15570 PF07702 UTRA domain EJN92_15575 PF01979 Amidohydrolase family EJN92_15580 PF01380 SIS domain EJN92_15590 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_15595 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_15600 PF01915 Glycosyl hydrolase family 3 C-terminal domain EJN92_15600 PF00933 Glycosyl hydrolase family 3 N terminal domain EJN92_15605 PF00005 ABC transporter EJN92_15605 PF08402 TOBE domain EJN92_15610 PF01797 Transposase IS200 like EJN92_15630 PF14497 Glutathione S-transferase, C-terminal domain EJN92_15630 PF02798 Glutathione S-transferase, N-terminal domain EJN92_15635 PF11849 Domain of unknown function (DUF3369) EJN92_15640 PF00512 His Kinase A (phospho-acceptor) domain EJN92_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_15650 PF07969 Amidohydrolase family EJN92_15675 PF01209 ubiE/COQ5 methyltransferase family EJN92_15700 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_15700 PF18113 Rubredoxin binding C-terminal domain EJN92_15705 PF00301 Rubredoxin EJN92_15715 PF01515 Phosphate acetyl/butaryl transferase EJN92_15715 PF00390 Malic enzyme, N-terminal domain EJN92_15715 PF03949 Malic enzyme, NAD binding domain EJN92_15770 PF04542 Sigma-70 region 2 EJN92_15770 PF04545 Sigma-70, region 4 EJN92_15775 PF02469 Fasciclin domain EJN92_15790 PF17912 MalK OB fold domain EJN92_15790 PF03459 TOBE domain EJN92_15790 PF00005 ABC transporter EJN92_15805 PF01547 Bacterial extracellular solute-binding protein EJN92_15810 PF02264 LamB porin EJN92_15820 PF00072 Response regulator receiver domain EJN92_15820 PF00486 Transcriptional regulatory protein, C terminal EJN92_15825 PF00512 His Kinase A (phospho-acceptor) domain EJN92_15825 PF00672 HAMP domain EJN92_15825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_15875 PF00080 Copper/zinc superoxide dismutase (SODC) EJN92_15905 PF00440 Bacterial regulatory proteins, tetR family EJN92_15905 PF16925 Tetracyclin repressor-like, C-terminal domain EJN92_15910 PF00465 Iron-containing alcohol dehydrogenase EJN92_15915 PF00107 Zinc-binding dehydrogenase EJN92_15915 PF16884 N-terminal domain of oxidoreductase EJN92_15920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EJN92_15930 PF00171 Aldehyde dehydrogenase family EJN92_15955 PF01878 EVE domain EJN92_15965 PF08279 HTH domain EJN92_15965 PF13280 WYL domain EJN92_15970 PF00011 Hsp20/alpha crystallin family EJN92_15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_15975 PF00512 His Kinase A (phospho-acceptor) domain EJN92_15990 PF01966 HD domain EJN92_15990 PF11871 Domain of unknown function (DUF3391) EJN92_16005 PF13417 Glutathione S-transferase, N-terminal domain EJN92_16005 PF00043 Glutathione S-transferase, C-terminal domain EJN92_16020 PF00672 HAMP domain EJN92_16020 PF02203 Tar ligand binding domain homologue EJN92_16020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_16025 PF02885 Glycosyl transferase family, helical bundle domain EJN92_16040 PF00392 Bacterial regulatory proteins, gntR family EJN92_16040 PF00155 Aminotransferase class I and II EJN92_16045 PF07317 Flagellar regulator YcgR EJN92_16045 PF07238 PilZ domain EJN92_16050 PF03472 Autoinducer binding domain EJN92_16050 PF00196 Bacterial regulatory proteins, luxR family EJN92_16055 PF00486 Transcriptional regulatory protein, C terminal EJN92_16055 PF00072 Response regulator receiver domain EJN92_16060 PF02397 Bacterial sugar transferase EJN92_16090 PF01618 MotA/TolQ/ExbB proton channel family EJN92_16095 PF02472 Biopolymer transport protein ExbD/TolR EJN92_16100 PF02472 Biopolymer transport protein ExbD/TolR EJN92_16120 PF08334 Type II secretion system (T2SS), protein G EJN92_16120 PF07963 Prokaryotic N-terminal methylation motif EJN92_16125 PF00482 Type II secretion system (T2SS), protein F EJN92_16130 PF00437 Type II/IV secretion system protein EJN92_16130 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EJN92_16155 PF03958 Bacterial type II/III secretion system short domain EJN92_16155 PF00263 Bacterial type II and III secretion system protein EJN92_16160 PF08334 Type II secretion system (T2SS), protein G EJN92_16160 PF07963 Prokaryotic N-terminal methylation motif EJN92_16165 PF07963 Prokaryotic N-terminal methylation motif EJN92_16165 PF08334 Type II secretion system (T2SS), protein G EJN92_16210 PF00563 EAL domain EJN92_16210 PF03707 Bacterial signalling protein N terminal repeat EJN92_16210 PF00990 Diguanylate cyclase, GGDEF domain EJN92_16220 PF01197 Ribosomal protein L31 EJN92_16225 PF03458 UPF0126 domain EJN92_16230 PF00440 Bacterial regulatory proteins, tetR family EJN92_16230 PF08361 MAATS-type transcriptional repressor, C-terminal region EJN92_16235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_16240 PF00873 AcrB/AcrD/AcrF family EJN92_16245 PF02321 Outer membrane efflux protein EJN92_16250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EJN92_16250 PF07498 Rho termination factor, N-terminal domain EJN92_16250 PF07497 Rho termination factor, RNA-binding domain EJN92_16255 PF00085 Thioredoxin EJN92_16280 PF01790 Prolipoprotein diacylglyceryl transferase EJN92_16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_16285 PF03466 LysR substrate binding domain EJN92_16295 PF00034 Cytochrome c EJN92_16300 PF13458 Periplasmic binding protein EJN92_16320 PF02445 Quinolinate synthetase A protein EJN92_16325 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EJN92_16325 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EJN92_16330 PF02910 Fumarate reductase flavoprotein C-term EJN92_16330 PF00890 FAD binding domain EJN92_16335 PF01370 NAD dependent epimerase/dehydratase family EJN92_16335 PF02222 ATP-grasp domain EJN92_16340 PF00216 Bacterial DNA-binding protein EJN92_16355 PF05698 Bacterial trigger factor protein (TF) C-terminus EJN92_16360 PF00115 Cytochrome C and Quinol oxidase polypeptide I EJN92_16375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_16375 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EJN92_16380 PF13746 4Fe-4S dicluster domain EJN92_16380 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EJN92_16380 PF12801 4Fe-4S binding domain EJN92_16405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_16405 PF07730 Histidine kinase EJN92_16405 PF05231 MASE1 EJN92_16415 PF13545 Crp-like helix-turn-helix domain EJN92_16415 PF00027 Cyclic nucleotide-binding domain EJN92_16420 PF00196 Bacterial regulatory proteins, luxR family EJN92_16420 PF00072 Response regulator receiver domain EJN92_16425 PF00072 Response regulator receiver domain EJN92_16425 PF00196 Bacterial regulatory proteins, luxR family EJN92_16430 PF03880 DbpA RNA binding domain EJN92_16430 PF00270 DEAD/DEAH box helicase EJN92_16430 PF00271 Helicase conserved C-terminal domain EJN92_16445 PF00990 Diguanylate cyclase, GGDEF domain EJN92_16455 PF01584 CheW-like domain EJN92_16455 PF00072 Response regulator receiver domain EJN92_16470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EJN92_16470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EJN92_16475 PF02601 Exonuclease VII, large subunit EJN92_16475 PF13742 OB-fold nucleic acid binding domain EJN92_16480 PF01618 MotA/TolQ/ExbB proton channel family EJN92_16485 PF02472 Biopolymer transport protein ExbD/TolR EJN92_16490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EJN92_16495 PF03966 Trm112p-like protein EJN92_16500 PF02348 Cytidylyltransferase EJN92_16505 PF05191 Adenylate kinase, active site lid EJN92_16515 PF00106 short chain dehydrogenase EJN92_16525 PF00545 ribonuclease EJN92_16535 PF00551 Formyl transferase EJN92_16540 PF01029 NusB family EJN92_16540 PF01189 16S rRNA methyltransferase RsmB/F EJN92_16545 PF12794 Mechanosensitive ion channel inner membrane domain 1 EJN92_16545 PF12795 Mechanosensitive ion channel porin domain EJN92_16545 PF00924 Mechanosensitive ion channel EJN92_16555 PF00471 Ribosomal protein L33 EJN92_16560 PF00830 Ribosomal L28 family EJN92_16565 PF04002 RadC-like JAB domain EJN92_16570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_16575 PF02401 LytB protein EJN92_16580 PF02653 Branched-chain amino acid transport system / permease component EJN92_16585 PF11862 Domain of unknown function (DUF3382) EJN92_16585 PF02653 Branched-chain amino acid transport system / permease component EJN92_16590 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_16590 PF00005 ABC transporter EJN92_16595 PF00005 ABC transporter EJN92_16605 PF00768 D-alanyl-D-alanine carboxypeptidase EJN92_16610 PF08335 GlnD PII-uridylyltransferase EJN92_16610 PF03710 Glutamate-ammonia ligase adenylyltransferase EJN92_16620 PF00795 Carbon-nitrogen hydrolase EJN92_16625 PF01523 Putative modulator of DNA gyrase EJN92_16630 PF00793 DAHP synthetase I family EJN92_16640 PF04461 Protein of unknown function (DUF520) EJN92_16645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EJN92_16645 PF01565 FAD binding domain EJN92_16655 PF06865 Pyrimidine/purine nucleoside phosphorylase EJN92_16660 PF00764 Arginosuccinate synthase EJN92_16665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EJN92_16665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EJN92_16670 PF00202 Aminotransferase class-III EJN92_16680 PF00175 Oxidoreductase NAD-binding domain EJN92_16680 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_16680 PF00970 Oxidoreductase FAD-binding domain EJN92_16690 PF00072 Response regulator receiver domain EJN92_16695 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EJN92_16695 PF00437 Type II/IV secretion system protein EJN92_16720 PF00155 Aminotransferase class I and II EJN92_16730 PF01545 Cation efflux family EJN92_16740 PF02824 TGS domain EJN92_16740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EJN92_16740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EJN92_16740 PF03129 Anticodon binding domain EJN92_16745 PF05198 Translation initiation factor IF-3, N-terminal domain EJN92_16745 PF00707 Translation initiation factor IF-3, C-terminal domain EJN92_16750 PF01632 Ribosomal protein L35 EJN92_16755 PF00453 Ribosomal protein L20 EJN92_16760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EJN92_16760 PF01409 tRNA synthetases class II core domain (F) EJN92_16770 PF00216 Bacterial DNA-binding protein EJN92_16780 PF00571 CBS domain EJN92_16780 PF03471 Transporter associated domain EJN92_16785 PF00795 Carbon-nitrogen hydrolase EJN92_16795 PF00563 EAL domain EJN92_16795 PF00990 Diguanylate cyclase, GGDEF domain EJN92_16795 PF03707 Bacterial signalling protein N terminal repeat EJN92_16805 PF17103 Stealth protein CR4, conserved region 4 EJN92_16805 PF17102 Stealth protein CR3, conserved region 3 EJN92_16805 PF17101 Stealth protein CR1, conserved region 1 EJN92_16805 PF11380 Stealth protein CR2, conserved region 2 EJN92_16825 PF13193 AMP-binding enzyme C-terminal domain EJN92_16825 PF00501 AMP-binding enzyme EJN92_16840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EJN92_16845 PF02464 Competence-damaged protein EJN92_16860 PF04608 Phosphatidylglycerophosphatase A EJN92_16865 PF00586 AIR synthase related protein, N-terminal domain EJN92_16865 PF02769 AIR synthase related protein, C-terminal domain EJN92_16870 PF00672 HAMP domain EJN92_16870 PF00072 Response regulator receiver domain EJN92_16870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EJN92_16870 PF00512 His Kinase A (phospho-acceptor) domain EJN92_16870 PF01627 Hpt domain EJN92_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_16895 PF00069 Protein kinase domain EJN92_16895 PF03793 PASTA domain EJN92_16900 PF07690 Major Facilitator Superfamily EJN92_16905 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_16905 PF18267 Rubredoxin NAD+ reductase C-terminal domain EJN92_16905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EJN92_16905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EJN92_16905 PF04324 BFD-like [2Fe-2S] binding domain EJN92_16910 PF00355 Rieske [2Fe-2S] domain EJN92_16915 PF01568 Molydopterin dinucleotide binding domain EJN92_16915 PF00384 Molybdopterin oxidoreductase EJN92_16915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EJN92_16915 PF04324 BFD-like [2Fe-2S] binding domain EJN92_16940 PF03169 OPT oligopeptide transporter protein EJN92_16955 PF00854 POT family EJN92_16960 PF12849 PBP superfamily domain EJN92_16965 PF01799 [2Fe-2S] binding domain EJN92_16965 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_16970 PF13478 XdhC Rossmann domain EJN92_16970 PF02625 XdhC and CoxI family EJN92_16975 PF00692 dUTPase EJN92_16980 PF01276 Orn/Lys/Arg decarboxylase, major domain EJN92_16980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain EJN92_16980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EJN92_17000 PF00186 Dihydrofolate reductase EJN92_17005 PF00303 Thymidylate synthase EJN92_17010 PF00512 His Kinase A (phospho-acceptor) domain EJN92_17010 PF00989 PAS fold EJN92_17010 PF13188 PAS domain EJN92_17010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_17010 PF13426 PAS domain EJN92_17015 PF04384 Iron-sulphur cluster assembly EJN92_17020 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_17025 PF00012 Hsp70 protein EJN92_17030 PF07743 HSCB C-terminal oligomerisation domain EJN92_17035 PF01521 Iron-sulphur cluster biosynthesis EJN92_17040 PF01592 NifU-like N terminal domain EJN92_17045 PF00266 Aminotransferase class-V EJN92_17050 PF02082 Transcriptional regulator EJN92_17060 PF02403 Seryl-tRNA synthetase N-terminal domain EJN92_17060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EJN92_17065 PF00563 EAL domain EJN92_17065 PF00990 Diguanylate cyclase, GGDEF domain EJN92_17065 PF03707 Bacterial signalling protein N terminal repeat EJN92_17065 PF13188 PAS domain EJN92_17075 PF13356 Arm DNA-binding domain EJN92_17075 PF00589 Phage integrase family EJN92_17095 PF13817 IS66 C-terminal element EJN92_17095 PF03050 Transposase IS66 family EJN92_17095 PF13005 zinc-finger binding domain of transposase IS66 EJN92_17095 PF13007 Transposase C of IS166 homeodomain EJN92_17150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EJN92_17175 PF00753 Metallo-beta-lactamase superfamily EJN92_17185 PF03023 Lipid II flippase MurJ EJN92_17190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_17190 PF00672 HAMP domain EJN92_17195 PF01584 CheW-like domain EJN92_17200 PF01966 HD domain EJN92_17200 PF11871 Domain of unknown function (DUF3391) EJN92_17205 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_17205 PF08990 Erythronolide synthase docking EJN92_17205 PF02801 Beta-ketoacyl synthase, C-terminal domain EJN92_17205 PF08659 KR domain EJN92_17205 PF00550 Phosphopantetheine attachment site EJN92_17205 PF14765 Polyketide synthase dehydratase EJN92_17205 PF00698 Acyl transferase domain EJN92_17205 PF00109 Beta-ketoacyl synthase, N-terminal domain EJN92_17205 PF16197 Ketoacyl-synthetase C-terminal extension EJN92_17210 PF01975 Survival protein SurE EJN92_17220 PF01476 LysM domain EJN92_17220 PF01551 Peptidase family M23 EJN92_17225 PF00140 Sigma-70 factor, region 1.2 EJN92_17225 PF04542 Sigma-70 region 2 EJN92_17225 PF04539 Sigma-70 region 3 EJN92_17225 PF04545 Sigma-70, region 4 EJN92_17230 PF05958 tRNA (Uracil-5-)-methyltransferase EJN92_17235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EJN92_17235 PF10996 Beta-Casp domain EJN92_17235 PF00753 Metallo-beta-lactamase superfamily EJN92_17250 PF00313 'Cold-shock' DNA-binding domain EJN92_17255 PF02203 Tar ligand binding domain homologue EJN92_17255 PF00672 HAMP domain EJN92_17255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EJN92_17260 PF03466 LysR substrate binding domain EJN92_17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_17265 PF13419 Haloacid dehalogenase-like hydrolase EJN92_17270 PF01274 Malate synthase EJN92_17275 PF04362 Bacterial Fe(2+) trafficking EJN92_17280 PF00583 Acetyltransferase (GNAT) family EJN92_17280 PF00696 Amino acid kinase family EJN92_17290 PF00270 DEAD/DEAH box helicase EJN92_17290 PF11898 Domain of unknown function (DUF3418) EJN92_17290 PF04408 Helicase associated domain (HA2) EJN92_17290 PF00271 Helicase conserved C-terminal domain EJN92_17290 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EJN92_17310 PF00069 Protein kinase domain EJN92_17310 PF03793 PASTA domain EJN92_17325 PF02954 Bacterial regulatory protein, Fis family EJN92_17325 PF00072 Response regulator receiver domain EJN92_17325 PF00158 Sigma-54 interaction domain EJN92_17335 PF08439 Oligopeptidase F EJN92_17335 PF01432 Peptidase family M3 EJN92_17340 PF02562 PhoH-like protein EJN92_17340 PF13638 PIN domain EJN92_17345 PF00578 AhpC/TSA family EJN92_17350 PF01522 Polysaccharide deacetylase EJN92_17355 PF01370 NAD dependent epimerase/dehydratase family EJN92_17355 PF00551 Formyl transferase EJN92_17355 PF02911 Formyl transferase, C-terminal domain EJN92_17360 PF02911 Formyl transferase, C-terminal domain EJN92_17360 PF01370 NAD dependent epimerase/dehydratase family EJN92_17360 PF00551 Formyl transferase EJN92_17365 PF00535 Glycosyl transferase family 2 EJN92_17370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EJN92_17375 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase EJN92_17380 PF04430 Protein of unknown function (DUF498/DUF598) EJN92_17385 PF00155 Aminotransferase class I and II EJN92_17390 PF03447 Homoserine dehydrogenase, NAD binding domain EJN92_17390 PF01842 ACT domain EJN92_17390 PF00742 Homoserine dehydrogenase EJN92_17405 PF01571 Aminomethyltransferase folate-binding domain EJN92_17410 PF02618 YceG-like family EJN92_17415 PF02223 Thymidylate kinase EJN92_17420 PF09115 DNA polymerase III, delta subunit, C terminal EJN92_17430 PF00583 Acetyltransferase (GNAT) family EJN92_17435 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EJN92_17465 PF00849 RNA pseudouridylate synthase EJN92_17465 PF01479 S4 domain EJN92_17475 PF00557 Metallopeptidase family M24 EJN92_17480 PF00318 Ribosomal protein S2 EJN92_17485 PF00889 Elongation factor TS EJN92_17490 PF00696 Amino acid kinase family EJN92_17495 PF01765 Ribosome recycling factor EJN92_17500 PF01255 Putative undecaprenyl diphosphate synthase EJN92_17510 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EJN92_17510 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EJN92_17510 PF13288 DXP reductoisomerase C-terminal domain EJN92_17515 PF17820 PDZ domain EJN92_17515 PF02163 Peptidase family M50 EJN92_17520 PF01103 Surface antigen EJN92_17520 PF07244 Surface antigen variable number repeat EJN92_17530 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_17530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EJN92_17535 PF07977 FabA-like domain EJN92_17540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EJN92_17540 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_17545 PF02684 Lipid-A-disaccharide synthetase EJN92_17550 PF01026 TatD related DNase EJN92_17560 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_17565 PF00005 ABC transporter EJN92_17575 PF07733 Bacterial DNA polymerase III alpha NTPase domain EJN92_17575 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EJN92_17575 PF14579 Helix-hairpin-helix motif EJN92_17575 PF02811 PHP domain EJN92_17600 PF13193 AMP-binding enzyme C-terminal domain EJN92_17600 PF00550 Phosphopantetheine attachment site EJN92_17600 PF00501 AMP-binding enzyme EJN92_17600 PF00668 Condensation domain EJN92_17605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_17640 PF12843 Putative quorum-sensing-regulated virulence factor EJN92_17660 PF00990 Diguanylate cyclase, GGDEF domain EJN92_17660 PF17151 Periplasmic sensor domain EJN92_17735 PF01734 Patatin-like phospholipase EJN92_17740 PF07702 UTRA domain EJN92_17740 PF00392 Bacterial regulatory proteins, gntR family EJN92_17745 PF17392 Urocanase C-terminal domain EJN92_17745 PF01175 Urocanase Rossmann-like domain EJN92_17745 PF17391 Urocanase N-terminal domain EJN92_17750 PF00221 Aromatic amino acid lyase EJN92_17760 PF01979 Amidohydrolase family EJN92_17770 PF00072 Response regulator receiver domain EJN92_17770 PF00486 Transcriptional regulatory protein, C terminal EJN92_17775 PF00563 EAL domain EJN92_17775 PF00072 Response regulator receiver domain EJN92_17775 PF00990 Diguanylate cyclase, GGDEF domain EJN92_17780 PF00521 DNA gyrase/topoisomerase IV, subunit A EJN92_17785 PF00986 DNA gyrase B subunit, carboxyl terminus EJN92_17785 PF01751 Toprim domain EJN92_17785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_17785 PF00204 DNA gyrase B EJN92_17795 PF13302 Acetyltransferase (GNAT) domain EJN92_17800 PF01649 Ribosomal protein S20 EJN92_17810 PF00849 RNA pseudouridylate synthase EJN92_17815 PF00180 Isocitrate/isopropylmalate dehydrogenase EJN92_17820 PF00072 Response regulator receiver domain EJN92_17820 PF00196 Bacterial regulatory proteins, luxR family EJN92_17825 PF17200 Single Cache domain 2 EJN92_17825 PF07730 Histidine kinase EJN92_17830 PF00313 'Cold-shock' DNA-binding domain EJN92_17835 PF02617 ATP-dependent Clp protease adaptor protein ClpS EJN92_17840 PF07724 AAA domain (Cdc48 subfamily) EJN92_17840 PF02861 Clp amino terminal domain, pathogenicity island component EJN92_17840 PF10431 C-terminal, D2-small domain, of ClpB protein EJN92_17840 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_17840 PF17871 AAA lid domain EJN92_17850 PF02028 BCCT, betaine/carnitine/choline family transporter EJN92_17860 PF18027 Cytosolic carboxypeptidase N-terminal domain EJN92_17860 PF00246 Zinc carboxypeptidase EJN92_17875 PF01575 MaoC like domain EJN92_17885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_17885 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_17885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_17895 PF00043 Glutathione S-transferase, C-terminal domain EJN92_17895 PF02798 Glutathione S-transferase, N-terminal domain EJN92_17910 PF08534 Redoxin EJN92_17910 PF00462 Glutaredoxin EJN92_17935 PF03461 TRCF domain EJN92_17935 PF17757 UvrB interaction domain EJN92_17935 PF02559 CarD-like/TRCF domain EJN92_17935 PF00271 Helicase conserved C-terminal domain EJN92_17935 PF00270 DEAD/DEAH box helicase EJN92_17940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EJN92_17945 PF02542 YgbB family EJN92_17955 PF03060 Nitronate monooxygenase EJN92_17960 PF17785 PUA-like domain EJN92_17960 PF10672 S-adenosylmethionine-dependent methyltransferase EJN92_17965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EJN92_17970 PF02545 Maf-like protein EJN92_17980 PF01783 Ribosomal L32p protein family EJN92_17985 PF02504 Fatty acid synthesis protein EJN92_17990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EJN92_17990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EJN92_17995 PF00698 Acyl transferase domain EJN92_18005 PF00550 Phosphopantetheine attachment site EJN92_18010 PF02801 Beta-ketoacyl synthase, C-terminal domain EJN92_18010 PF00109 Beta-ketoacyl synthase, N-terminal domain EJN92_18020 PF04542 Sigma-70 region 2 EJN92_18020 PF08281 Sigma-70, region 4 EJN92_18035 PF17820 PDZ domain EJN92_18035 PF13180 PDZ domain EJN92_18045 PF01351 Ribonuclease HII EJN92_18050 PF00588 SpoU rRNA Methylase family EJN92_18050 PF08032 RNA 2'-O ribose methyltransferase substrate binding EJN92_18055 PF03618 Kinase/pyrophosphorylase EJN92_18060 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EJN92_18060 PF02896 PEP-utilising enzyme, TIM barrel domain EJN92_18060 PF00391 PEP-utilising enzyme, mobile domain EJN92_18070 PF01145 SPFH domain / Band 7 family EJN92_18075 PF00463 Isocitrate lyase family EJN92_18080 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EJN92_18085 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_18090 PF00290 Tryptophan synthase alpha chain EJN92_18095 PF17848 Acetyl-coA carboxylase zinc finger domain EJN92_18095 PF01039 Carboxyl transferase domain EJN92_18100 PF02875 Mur ligase family, glutamate ligase domain EJN92_18100 PF08245 Mur ligase middle domain EJN92_18110 PF02674 Colicin V production protein EJN92_18115 PF00156 Phosphoribosyl transferase domain EJN92_18120 PF00593 TonB dependent receptor EJN92_18120 PF07715 TonB-dependent Receptor Plug Domain EJN92_18125 PF02811 PHP domain EJN92_18130 PF01435 Peptidase family M48 EJN92_18135 PF01300 Telomere recombination EJN92_18140 PF02163 Peptidase family M50 EJN92_18150 PF00701 Dihydrodipicolinate synthetase family EJN92_18155 PF06804 NlpB/DapX lipoprotein EJN92_18160 PF01312 FlhB HrpN YscU SpaS Family EJN92_18165 PF00771 FHIPEP family EJN92_18170 PF00448 SRP54-type protein, GTPase domain EJN92_18175 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EJN92_18180 PF04542 Sigma-70 region 2 EJN92_18180 PF04545 Sigma-70, region 4 EJN92_18180 PF04539 Sigma-70 region 3 EJN92_18185 PF01618 MotA/TolQ/ExbB proton channel family EJN92_18190 PF00691 OmpA family EJN92_18190 PF13677 Membrane MotB of proton-channel complex MotA/MotB EJN92_18205 PF17656 FlgA N-terminal domain EJN92_18205 PF13144 Chaperone for flagella basal body P-ring formation EJN92_18210 PF00460 Flagella basal body rod protein EJN92_18215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EJN92_18215 PF00460 Flagella basal body rod protein EJN92_18220 PF13861 FlgD Tudor-like domain EJN92_18220 PF03963 Flagellar hook capping protein - N-terminal region EJN92_18220 PF13860 FlgD Ig-like domain EJN92_18225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EJN92_18225 PF00460 Flagella basal body rod protein EJN92_18225 PF07559 Flagellar basal body protein FlaE EJN92_18230 PF00460 Flagella basal body rod protein EJN92_18230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EJN92_18235 PF00460 Flagella basal body rod protein EJN92_18235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EJN92_18240 PF02107 Flagellar L-ring protein EJN92_18245 PF02119 Flagellar P-ring protein EJN92_18250 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EJN92_18250 PF10135 Rod binding protein EJN92_18255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EJN92_18255 PF07196 Flagellin hook IN motif EJN92_18260 PF00669 Bacterial flagellin N-terminal helical region EJN92_18275 PF00535 Glycosyl transferase family 2 EJN92_18285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EJN92_18285 PF02769 AIR synthase related protein, C-terminal domain EJN92_18285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EJN92_18290 PF13426 PAS domain EJN92_18290 PF00989 PAS fold EJN92_18290 PF00512 His Kinase A (phospho-acceptor) domain EJN92_18290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_18290 PF08447 PAS fold EJN92_18290 PF13493 Domain of unknown function (DUF4118) EJN92_18295 PF00072 Response regulator receiver domain EJN92_18295 PF00196 Bacterial regulatory proteins, luxR family EJN92_18315 PF11842 Domain of unknown function (DUF3362) EJN92_18315 PF04055 Radical SAM superfamily EJN92_18315 PF08497 Radical SAM N-terminal EJN92_18320 PF01752 Collagenase EJN92_18320 PF08453 Peptidase family M9 N-terminal EJN92_18325 PF06224 Winged helix DNA-binding domain EJN92_18330 PF00579 tRNA synthetases class I (W and Y) EJN92_18335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EJN92_18335 PF03900 Porphobilinogen deaminase, C-terminal domain EJN92_18340 PF02602 Uroporphyrinogen-III synthase HemD EJN92_18345 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EJN92_18355 PF00719 Inorganic pyrophosphatase EJN92_18360 PF00069 Protein kinase domain EJN92_18360 PF03793 PASTA domain EJN92_18370 PF00795 Carbon-nitrogen hydrolase EJN92_18370 PF02540 NAD synthase EJN92_18375 PF00543 Nitrogen regulatory protein P-II EJN92_18385 PF01713 Smr domain EJN92_18390 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_18395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EJN92_18395 PF17854 FtsK alpha domain EJN92_18395 PF09397 Ftsk gamma domain EJN92_18395 PF01580 FtsK/SpoIIIE family EJN92_18400 PF03548 Outer membrane lipoprotein carrier protein LolA EJN92_18405 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_18405 PF16193 AAA C-terminal domain EJN92_18405 PF12002 MgsA AAA+ ATPase C terminal EJN92_18415 PF00171 Aldehyde dehydrogenase family EJN92_18420 PF00158 Sigma-54 interaction domain EJN92_18420 PF02954 Bacterial regulatory protein, Fis family EJN92_18420 PF00989 PAS fold EJN92_18425 PF01037 Lrp/AsnC ligand binding domain EJN92_18425 PF13404 AsnC-type helix-turn-helix domain EJN92_18440 PF00593 TonB dependent receptor EJN92_18440 PF07715 TonB-dependent Receptor Plug Domain EJN92_18450 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EJN92_18455 PF00111 2Fe-2S iron-sulfur cluster binding domain EJN92_18455 PF01799 [2Fe-2S] binding domain EJN92_18460 PF13593 SBF-like CPA transporter family (DUF4137) EJN92_18465 PF00107 Zinc-binding dehydrogenase EJN92_18465 PF16884 N-terminal domain of oxidoreductase EJN92_18470 PF00551 Formyl transferase EJN92_18475 PF07152 YaeQ protein EJN92_18480 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_18500 PF00056 lactate/malate dehydrogenase, NAD binding domain EJN92_18500 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EJN92_18505 PF00392 Bacterial regulatory proteins, gntR family EJN92_18505 PF07702 UTRA domain EJN92_18510 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EJN92_18520 PF00890 FAD binding domain EJN92_18520 PF02910 Fumarate reductase flavoprotein C-term EJN92_18525 PF13085 2Fe-2S iron-sulfur cluster binding domain EJN92_18530 PF03937 Flavinator of succinate dehydrogenase EJN92_18535 PF00285 Citrate synthase, C-terminal domain EJN92_18540 PF00676 Dehydrogenase E1 component EJN92_18540 PF02779 Transketolase, pyrimidine binding domain EJN92_18540 PF16870 2-oxoglutarate dehydrogenase C-terminal EJN92_18540 PF16078 2-oxoglutarate dehydrogenase N-terminus EJN92_18545 PF00364 Biotin-requiring enzyme EJN92_18545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EJN92_18545 PF02817 e3 binding domain EJN92_18555 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_18555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EJN92_18560 PF03969 AFG1-like ATPase EJN92_18570 PF00155 Aminotransferase class I and II EJN92_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_18585 PF00512 His Kinase A (phospho-acceptor) domain EJN92_18585 PF00672 HAMP domain EJN92_18590 PF00486 Transcriptional regulatory protein, C terminal EJN92_18590 PF00072 Response regulator receiver domain EJN92_18600 PF01668 SmpB protein EJN92_18605 PF03364 Polyketide cyclase / dehydrase and lipid transport EJN92_18610 PF03658 RnfH family Ubiquitin EJN92_18620 PF00571 CBS domain EJN92_18620 PF00478 IMP dehydrogenase / GMP reductase domain EJN92_18630 PF02540 NAD synthase EJN92_18630 PF00958 GMP synthase C terminal domain EJN92_18630 PF00117 Glutamine amidotransferase class-I EJN92_18640 PF01242 6-pyruvoyl tetrahydropterin synthase EJN92_18645 PF14437 MafB19-like deaminase EJN92_18650 PF17676 LD-carboxypeptidase C-terminal domain EJN92_18650 PF02016 LD-carboxypeptidase N-terminal domain EJN92_18655 PF00501 AMP-binding enzyme EJN92_18655 PF13193 AMP-binding enzyme C-terminal domain EJN92_18660 PF01494 FAD binding domain EJN92_18665 PF00106 short chain dehydrogenase EJN92_18675 PF00378 Enoyl-CoA hydratase/isomerase EJN92_18680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_18680 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_18680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_18685 PF01042 Endoribonuclease L-PSP EJN92_18710 PF02350 UDP-N-acetylglucosamine 2-epimerase EJN92_18725 PF01292 Prokaryotic cytochrome b561 EJN92_18735 PF00155 Aminotransferase class I and II EJN92_18735 PF00392 Bacterial regulatory proteins, gntR family EJN92_18745 PF13411 MerR HTH family regulatory protein EJN92_18750 PF00072 Response regulator receiver domain EJN92_18755 PF01430 Hsp33 protein EJN92_18760 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_18765 PF04305 Protein of unknown function (DUF455) EJN92_18775 PF13193 AMP-binding enzyme C-terminal domain EJN92_18775 PF00501 AMP-binding enzyme EJN92_18780 PF12697 Alpha/beta hydrolase family EJN92_18785 PF01053 Cys/Met metabolism PLP-dependent enzyme EJN92_18805 PF02646 RmuC family EJN92_18850 PF03454 MoeA C-terminal region (domain IV) EJN92_18850 PF00994 Probable molybdopterin binding domain EJN92_18850 PF03453 MoeA N-terminal region (domain I and II) EJN92_18855 PF12804 MobA-like NTP transferase domain EJN92_18865 PF06463 Molybdenum Cofactor Synthesis C EJN92_18865 PF04055 Radical SAM superfamily EJN92_18870 PF12111 Polyribonucleotide phosphorylase C terminal EJN92_18870 PF10150 Ribonuclease E/G family EJN92_18870 PF00575 S1 RNA binding domain EJN92_18875 PF00849 RNA pseudouridylate synthase EJN92_18875 PF01479 S4 domain EJN92_18880 PF13419 Haloacid dehalogenase-like hydrolase EJN92_18900 PF00403 Heavy-metal-associated domain EJN92_18910 PF00581 Rhodanese-like domain EJN92_18915 PF13472 GDSL-like Lipase/Acylhydrolase family EJN92_18920 PF00005 ABC transporter EJN92_18925 PF01256 Carbohydrate kinase EJN92_18925 PF03853 YjeF-related protein N-terminus EJN92_18930 PF01311 Bacterial export proteins, family 1 EJN92_18935 PF01313 Bacterial export proteins, family 3 EJN92_18940 PF00813 FliP family EJN92_18945 PF04347 Flagellar biosynthesis protein, FliO EJN92_18950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EJN92_18950 PF16973 Flagellar motor switch protein FliN N-terminal EJN92_18955 PF02154 Flagellar motor switch protein FliM EJN92_18955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EJN92_18975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EJN92_18975 PF18269 T3SS EscN ATPase C-terminal domain EJN92_18985 PF14842 FliG N-terminal domain EJN92_18985 PF14841 FliG middle domain EJN92_18985 PF01706 FliG C-terminal domain EJN92_18990 PF08345 Flagellar M-ring protein C-terminal EJN92_18990 PF01514 Secretory protein of YscJ/FliF family EJN92_18995 PF02049 Flagellar hook-basal body complex protein FliE EJN92_19000 PF07238 PilZ domain EJN92_19000 PF07317 Flagellar regulator YcgR EJN92_19005 PF01312 FlhB HrpN YscU SpaS Family EJN92_19020 PF02561 Flagellar protein FliS EJN92_19025 PF07195 Flagellar hook-associated protein 2 C-terminus EJN92_19025 PF02465 Flagellar hook-associated protein 2 N-terminus EJN92_19035 PF00700 Bacterial flagellin C-terminal helical region EJN92_19035 PF00669 Bacterial flagellin N-terminal helical region EJN92_19040 PF00072 Response regulator receiver domain EJN92_19040 PF00990 Diguanylate cyclase, GGDEF domain EJN92_19045 PF00196 Bacterial regulatory proteins, luxR family EJN92_19045 PF00072 Response regulator receiver domain EJN92_19050 PF03449 Transcription elongation factor, N-terminal EJN92_19050 PF01272 Transcription elongation factor, GreA/GreB, C-term EJN92_19060 PF04607 Region found in RelA / SpoT proteins EJN92_19060 PF02824 TGS domain EJN92_19060 PF13291 ACT domain EJN92_19065 PF01192 RNA polymerase Rpb6 EJN92_19070 PF00625 Guanylate kinase EJN92_19075 PF08340 Domain of unknown function (DUF1732) EJN92_19075 PF03755 YicC-like family, N-terminal region EJN92_19080 PF00069 Protein kinase domain EJN92_19080 PF00805 Pentapeptide repeats (8 copies) EJN92_19090 PF03725 3' exoribonuclease family, domain 2 EJN92_19090 PF01138 3' exoribonuclease family, domain 1 EJN92_19095 PF01725 Ham1 family EJN92_19100 PF04055 Radical SAM superfamily EJN92_19100 PF06969 HemN C-terminal domain EJN92_19105 PF00563 EAL domain EJN92_19105 PF08668 HDOD domain EJN92_19110 PF03707 Bacterial signalling protein N terminal repeat EJN92_19110 PF00990 Diguanylate cyclase, GGDEF domain EJN92_19110 PF00563 EAL domain EJN92_19120 PF01266 FAD dependent oxidoreductase EJN92_19125 PF00120 Glutamine synthetase, catalytic domain EJN92_19130 PF01266 FAD dependent oxidoreductase EJN92_19135 PF00120 Glutamine synthetase, catalytic domain EJN92_19140 PF00171 Aldehyde dehydrogenase family EJN92_19150 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_19155 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_19160 PF00005 ABC transporter EJN92_19160 PF08402 TOBE domain EJN92_19165 PF13416 Bacterial extracellular solute-binding protein EJN92_19170 PF00202 Aminotransferase class-III EJN92_19175 PF00120 Glutamine synthetase, catalytic domain EJN92_19180 PF07722 Peptidase C26 EJN92_19185 PF00392 Bacterial regulatory proteins, gntR family EJN92_19185 PF00155 Aminotransferase class I and II EJN92_19190 PF02515 CoA-transferase family III EJN92_19195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_19195 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_19195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_19200 PF03466 LysR substrate binding domain EJN92_19205 PF00512 His Kinase A (phospho-acceptor) domain EJN92_19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_19215 PF00155 Aminotransferase class I and II EJN92_19215 PF00392 Bacterial regulatory proteins, gntR family EJN92_19220 PF00202 Aminotransferase class-III EJN92_19225 PF00171 Aldehyde dehydrogenase family EJN92_19240 PF13458 Periplasmic binding protein EJN92_19245 PF01266 FAD dependent oxidoreductase EJN92_19250 PF07722 Peptidase C26 EJN92_19255 PF00171 Aldehyde dehydrogenase family EJN92_19260 PF00202 Aminotransferase class-III EJN92_19265 PF00155 Aminotransferase class I and II EJN92_19265 PF00392 Bacterial regulatory proteins, gntR family EJN92_19295 PF00814 Glycoprotease family EJN92_19315 PF07690 Major Facilitator Superfamily EJN92_19320 PF18073 Rubredoxin metal binding domain EJN92_19325 PF13538 UvrD-like helicase C-terminal domain EJN92_19330 PF00580 UvrD/REP helicase N-terminal domain EJN92_19330 PF13361 UvrD-like helicase C-terminal domain EJN92_19330 PF12705 PD-(D/E)XK nuclease superfamily EJN92_19335 PF17946 RecC C-terminal domain EJN92_19345 PF00183 Hsp90 protein EJN92_19355 PF00990 Diguanylate cyclase, GGDEF domain EJN92_19355 PF00072 Response regulator receiver domain EJN92_19370 PF01979 Amidohydrolase family EJN92_19380 PF00925 GTP cyclohydrolase II EJN92_19380 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EJN92_19385 PF00885 6,7-dimethyl-8-ribityllumazine synthase EJN92_19390 PF01029 NusB family EJN92_19395 PF00155 Aminotransferase class I and II EJN92_19405 PF03466 LysR substrate binding domain EJN92_19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_19415 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EJN92_19425 PF01734 Patatin-like phospholipase EJN92_19430 PF00877 NlpC/P60 family EJN92_19435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EJN92_19435 PF00117 Glutamine amidotransferase class-I EJN92_19440 PF02142 MGS-like domain EJN92_19440 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EJN92_19440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EJN92_19445 PF03449 Transcription elongation factor, N-terminal EJN92_19445 PF01272 Transcription elongation factor, GreA/GreB, C-term EJN92_19455 PF01728 FtsJ-like methyltransferase EJN92_19460 PF01434 Peptidase family M41 EJN92_19460 PF06480 FtsH Extracellular EJN92_19460 PF17862 AAA+ lid domain EJN92_19460 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_19465 PF00809 Pterin binding enzyme EJN92_19470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EJN92_19470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EJN92_19470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EJN92_19470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EJN92_19485 PF02913 FAD linked oxidases, C-terminal domain EJN92_19485 PF01565 FAD binding domain EJN92_19495 PF03358 NADPH-dependent FMN reductase EJN92_19500 PF03631 Virulence factor BrkB EJN92_19505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EJN92_19510 PF12848 ABC transporter EJN92_19510 PF00005 ABC transporter EJN92_19515 PF05175 Methyltransferase small domain EJN92_19520 PF07687 Peptidase dimerisation domain EJN92_19520 PF01546 Peptidase family M20/M25/M40 EJN92_19525 PF03960 ArsC family EJN92_19530 PF00437 Type II/IV secretion system protein EJN92_19535 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EJN92_19535 PF00132 Bacterial transferase hexapeptide (six repeats) EJN92_19535 PF14602 Hexapeptide repeat of succinyl-transferase EJN92_19540 PF00155 Aminotransferase class I and II EJN92_19545 PF06470 SMC proteins Flexible Hinge Domain EJN92_19545 PF02463 RecF/RecN/SMC N terminal domain EJN92_19555 PF12826 Helix-hairpin-helix motif EJN92_19555 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EJN92_19555 PF03120 NAD-dependent DNA ligase OB-fold domain EJN92_19555 PF01653 NAD-dependent DNA ligase adenylation domain EJN92_19555 PF00533 BRCA1 C Terminus (BRCT) domain EJN92_19560 PF01327 Polypeptide deformylase EJN92_19570 PF01026 TatD related DNase EJN92_19575 PF00753 Metallo-beta-lactamase superfamily EJN92_19575 PF03772 Competence protein EJN92_19590 PF00117 Glutamine amidotransferase class-I EJN92_19590 PF06418 CTP synthase N-terminus EJN92_19595 PF00793 DAHP synthetase I family EJN92_19600 PF03952 Enolase, N-terminal domain EJN92_19600 PF00113 Enolase, C-terminal TIM barrel domain EJN92_19605 PF04977 Septum formation initiator EJN92_19615 PF07992 Pyridine nucleotide-disulphide oxidoreductase EJN92_19630 PF02796 Helix-turn-helix domain of resolvase EJN92_19630 PF00239 Resolvase, N terminal domain EJN92_19665 PF01526 Tn3 transposase DDE domain EJN92_19665 PF13700 Domain of unknown function (DUF4158) EJN92_19690 PF16450 Proteasomal ATPase OB C-terminal domain EJN92_19690 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_19690 PF17758 Proteasomal ATPase OB N-terminal domain EJN92_19730 PF00460 Flagella basal body rod protein EJN92_19740 PF00873 AcrB/AcrD/AcrF family EJN92_19745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EJN92_19760 PF00403 Heavy-metal-associated domain EJN92_19765 PF13411 MerR HTH family regulatory protein EJN92_19770 PF03239 Iron permease FTR1 family EJN92_19775 PF02673 Bacitracin resistance protein BacA EJN92_19785 PF01451 Low molecular weight phosphotyrosine protein phosphatase EJN92_19790 PF01451 Low molecular weight phosphotyrosine protein phosphatase EJN92_19795 PF00230 Major intrinsic protein EJN92_19800 PF03960 ArsC family EJN92_19805 PF03358 NADPH-dependent FMN reductase EJN92_19810 PF13700 Domain of unknown function (DUF4158) EJN92_19810 PF01526 Tn3 transposase DDE domain EJN92_19825 PF04371 Porphyromonas-type peptidyl-arginine deiminase EJN92_19830 PF07722 Peptidase C26 EJN92_19835 PF01266 FAD dependent oxidoreductase EJN92_19845 PF02416 mttA/Hcf106 family EJN92_19860 PF04371 Porphyromonas-type peptidyl-arginine deiminase EJN92_19870 PF00042 Globin EJN92_19870 PF00970 Oxidoreductase FAD-binding domain EJN92_19870 PF00175 Oxidoreductase NAD-binding domain EJN92_19890 PF00171 Aldehyde dehydrogenase family EJN92_19895 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_19900 PF00528 Binding-protein-dependent transport system inner membrane component EJN92_19905 PF00005 ABC transporter EJN92_19905 PF08402 TOBE domain EJN92_19910 PF00202 Aminotransferase class-III EJN92_19915 PF00120 Glutamine synthetase, catalytic domain EJN92_19925 PF13416 Bacterial extracellular solute-binding protein EJN92_19930 PF04371 Porphyromonas-type peptidyl-arginine deiminase EJN92_19940 PF04371 Porphyromonas-type peptidyl-arginine deiminase EJN92_19945 PF03466 LysR substrate binding domain EJN92_19945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_19950 PF02899 Phage integrase, N-terminal SAM-like domain EJN92_19950 PF00589 Phage integrase family EJN92_19955 PF00501 AMP-binding enzyme EJN92_19970 PF00107 Zinc-binding dehydrogenase EJN92_19970 PF13823 Alcohol dehydrogenase GroES-associated EJN92_19970 PF08240 Alcohol dehydrogenase GroES-like domain EJN92_19985 PF05594 Haemagluttinin repeat EJN92_19985 PF05860 haemagglutination activity domain EJN92_19985 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain EJN92_19985 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain EJN92_19985 PF05594 Haemagluttinin repeat EJN92_19985 PF13332 Hemagglutinin repeat EJN92_19985 PF05860 haemagglutination activity domain EJN92_19985 PF13018 Extended Signal Peptide of Type V secretion system EJN92_19985 PF13332 Hemagglutinin repeat EJN92_19985 PF13018 Extended Signal Peptide of Type V secretion system EJN92_19990 PF17287 POTRA domain EJN92_19990 PF08479 POTRA domain, ShlB-type EJN92_19990 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EJN92_20005 PF07664 Ferrous iron transport protein B C terminus EJN92_20005 PF07670 Nucleoside recognition EJN92_20005 PF02421 Ferrous iron transport protein B EJN92_20020 PF12848 ABC transporter EJN92_20020 PF00005 ABC transporter EJN92_20025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EJN92_20025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EJN92_20025 PF00378 Enoyl-CoA hydratase/isomerase EJN92_20030 PF00005 ABC transporter EJN92_20035 PF00005 ABC transporter EJN92_20035 PF12399 Branched-chain amino acid ATP-binding cassette transporter EJN92_20045 PF02653 Branched-chain amino acid transport system / permease component EJN92_20055 PF00501 AMP-binding enzyme EJN92_20055 PF13193 AMP-binding enzyme C-terminal domain EJN92_20065 PF00152 tRNA synthetases class II (D, K and N) EJN92_20065 PF01336 OB-fold nucleic acid binding domain EJN92_20070 PF00005 ABC transporter EJN92_20070 PF00664 ABC transporter transmembrane region EJN92_20075 PF01593 Flavin containing amine oxidoreductase EJN92_20085 PF01053 Cys/Met metabolism PLP-dependent enzyme EJN92_20090 PF00561 alpha/beta hydrolase fold EJN92_20090 PF08386 TAP-like protein EJN92_20095 PF01810 LysE type translocator EJN92_20105 PF00561 alpha/beta hydrolase fold EJN92_20110 PF00106 short chain dehydrogenase EJN92_20115 PF16884 N-terminal domain of oxidoreductase EJN92_20115 PF00107 Zinc-binding dehydrogenase EJN92_20130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EJN92_20130 PF02770 Acyl-CoA dehydrogenase, middle domain EJN92_20130 PF12806 Acetyl-CoA dehydrogenase C-terminal like EJN92_20130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EJN92_20135 PF02803 Thiolase, C-terminal domain EJN92_20135 PF00108 Thiolase, N-terminal domain EJN92_20140 PF00083 Sugar (and other) transporter EJN92_20140 PF08946 Osmosensory transporter coiled coil EJN92_20145 PF00892 EamA-like transporter family EJN92_20165 PF00291 Pyridoxal-phosphate dependent enzyme EJN92_20165 PF14821 Threonine synthase N terminus EJN92_20170 PF07883 Cupin domain EJN92_20170 PF01381 Helix-turn-helix EJN92_20175 PF00155 Aminotransferase class I and II EJN92_20180 PF01370 NAD dependent epimerase/dehydratase family EJN92_20185 PF03313 Serine dehydratase alpha chain EJN92_20185 PF03315 Serine dehydratase beta chain EJN92_20200 PF06974 Protein of unknown function (DUF1298) EJN92_20200 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EJN92_20210 PF04286 Protein of unknown function (DUF445) EJN92_20215 PF01594 AI-2E family transporter EJN92_20220 PF14602 Hexapeptide repeat of succinyl-transferase EJN92_20220 PF12464 Maltose acetyltransferase EJN92_20230 PF00270 DEAD/DEAH box helicase EJN92_20230 PF00271 Helicase conserved C-terminal domain EJN92_20235 PF07676 WD40-like Beta Propeller Repeat EJN92_20235 PF00326 Prolyl oligopeptidase family EJN92_20235 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region EJN92_20245 PF02322 Cytochrome bd terminal oxidase subunit II EJN92_20250 PF01654 Cytochrome bd terminal oxidase subunit I EJN92_20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_20270 PF02743 Cache domain EJN92_20270 PF00512 His Kinase A (phospho-acceptor) domain EJN92_20280 PF13091 PLD-like domain EJN92_20300 PF00392 Bacterial regulatory proteins, gntR family EJN92_20300 PF07729 FCD domain EJN92_20305 PF00202 Aminotransferase class-III EJN92_20310 PF00120 Glutamine synthetase, catalytic domain EJN92_20320 PF01734 Patatin-like phospholipase EJN92_20335 PF00149 Calcineurin-like phosphoesterase EJN92_20335 PF12320 Type 5 capsule protein repressor C-terminal domain EJN92_20380 PF09297 NADH pyrophosphatase zinc ribbon domain EJN92_20380 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain EJN92_20380 PF00293 NUDIX domain EJN92_20385 PF03150 Di-haem cytochrome c peroxidase EJN92_20395 PF06100 MCRA family EJN92_20400 PF01431 Peptidase family M13 EJN92_20400 PF05649 Peptidase family M13 EJN92_20405 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_20410 PF00384 Molybdopterin oxidoreductase EJN92_20410 PF01568 Molydopterin dinucleotide binding domain EJN92_20410 PF10518 TAT (twin-arginine translocation) pathway signal sequence EJN92_20410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EJN92_20415 PF01925 Sulfite exporter TauE/SafE EJN92_20420 PF00970 Oxidoreductase FAD-binding domain EJN92_20420 PF00175 Oxidoreductase NAD-binding domain EJN92_20430 PF03928 Haem-degrading EJN92_20450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EJN92_20460 PF00141 Peroxidase EJN92_20475 PF03466 LysR substrate binding domain EJN92_20475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_20480 PF07690 Major Facilitator Superfamily EJN92_20490 PF00583 Acetyltransferase (GNAT) family EJN92_20500 PF08668 HDOD domain EJN92_20515 PF00497 Bacterial extracellular solute-binding proteins, family 3 EJN92_20520 PF00109 Beta-ketoacyl synthase, N-terminal domain EJN92_20520 PF02801 Beta-ketoacyl synthase, C-terminal domain EJN92_20530 PF00583 Acetyltransferase (GNAT) family EJN92_20550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EJN92_20555 PF00034 Cytochrome c EJN92_20590 PF13545 Crp-like helix-turn-helix domain EJN92_20590 PF00027 Cyclic nucleotide-binding domain EJN92_20595 PF00196 Bacterial regulatory proteins, luxR family EJN92_20595 PF00072 Response regulator receiver domain EJN92_20600 PF07730 Histidine kinase EJN92_20600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EJN92_20600 PF00672 HAMP domain EJN92_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_20605 PF00484 Carbonic anhydrase EJN92_20610 PF06463 Molybdenum Cofactor Synthesis C EJN92_20610 PF04055 Radical SAM superfamily EJN92_20625 PF09312 SurA N-terminal domain EJN92_20625 PF00639 PPIC-type PPIASE domain EJN92_20630 PF02665 Nitrate reductase gamma subunit EJN92_20635 PF02613 Nitrate reductase delta subunit EJN92_20640 PF14711 Respiratory nitrate reductase beta C-terminal EJN92_20640 PF13247 4Fe-4S dicluster domain EJN92_20645 PF00384 Molybdopterin oxidoreductase EJN92_20645 PF14710 Respiratory nitrate reductase alpha N-terminal EJN92_20645 PF01568 Molydopterin dinucleotide binding domain EJN92_20650 PF07690 Major Facilitator Superfamily EJN92_20655 PF07690 Major Facilitator Superfamily EJN92_20665 PF02705 K+ potassium transporter EJN92_20675 PF00696 Amino acid kinase family EJN92_20675 PF13840 ACT domain EJN92_20675 PF01842 ACT domain EJN92_20685 PF00230 Major intrinsic protein EJN92_20690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EJN92_20695 PF01636 Phosphotransferase enzyme family EJN92_20700 PF02810 SEC-C motif EJN92_20700 PF03695 Uncharacterised protein family (UPF0149) EJN92_20710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EJN92_20710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EJN92_20720 PF00037 4Fe-4S binding domain EJN92_20720 PF11953 Domain of unknown function (DUF3470) EJN92_20740 PF04060 Putative Fe-S cluster EJN92_20745 PF00633 Helix-hairpin-helix motif EJN92_20745 PF10576 Iron-sulfur binding domain of endonuclease III EJN92_20745 PF00730 HhH-GPD superfamily base excision DNA repair protein EJN92_20750 PF00881 Nitroreductase family EJN92_20760 PF00034 Cytochrome c EJN92_20765 PF00034 Cytochrome c EJN92_20770 PF01434 Peptidase family M41 EJN92_20770 PF17862 AAA+ lid domain EJN92_20770 PF00004 ATPase family associated with various cellular activities (AAA) EJN92_20775 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EJN92_20775 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EJN92_20780 PF10369 Small subunit of acetolactate synthase EJN92_20785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EJN92_20785 PF00205 Thiamine pyrophosphate enzyme, central domain EJN92_20785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EJN92_20810 PF00440 Bacterial regulatory proteins, tetR family EJN92_20810 PF08361 MAATS-type transcriptional repressor, C-terminal region EJN92_20815 PF03641 Possible lysine decarboxylase EJN92_20825 PF02616 Segregation and condensation protein ScpA EJN92_20830 PF02569 Pantoate-beta-alanine ligase EJN92_20835 PF01497 Periplasmic binding protein EJN92_20840 PF06167 Glucose-regulated metallo-peptidase M90 EJN92_20845 PF00892 EamA-like transporter family EJN92_20860 PF04546 Sigma-70, non-essential region EJN92_20860 PF03979 Sigma-70 factor, region 1.1 EJN92_20860 PF04539 Sigma-70 region 3 EJN92_20860 PF04545 Sigma-70, region 4 EJN92_20860 PF00140 Sigma-70 factor, region 1.2 EJN92_20860 PF04542 Sigma-70 region 2 EJN92_20865 PF01467 Cytidylyltransferase-like EJN92_20865 PF13521 AAA domain EJN92_20870 PF04973 Nicotinamide mononucleotide transporter EJN92_20880 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EJN92_20880 PF07685 CobB/CobQ-like glutamine amidotransferase domain EJN92_20885 PF01497 Periplasmic binding protein EJN92_20890 PF01497 Periplasmic binding protein EJN92_20895 PF00155 Aminotransferase class I and II EJN92_20900 PF03186 CobD/Cbib protein EJN92_20900 PF17113 Regulatory signalling modulator protein AmpE EJN92_20905 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EJN92_20910 PF07685 CobB/CobQ-like glutamine amidotransferase domain EJN92_20910 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EJN92_20915 PF12557 Cob(I)alamin adenosyltransferase N terminal EJN92_20915 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EJN92_20920 PF00005 ABC transporter EJN92_20925 PF01032 FecCD transport family EJN92_20930 PF07715 TonB-dependent Receptor Plug Domain EJN92_20930 PF00593 TonB dependent receptor EJN92_20945 PF02654 Cobalamin-5-phosphate synthase EJN92_20950 PF02277 Phosphoribosyltransferase EJN92_20955 PF00072 Response regulator receiver domain EJN92_20955 PF04397 LytTr DNA-binding domain EJN92_20960 PF06580 Histidine kinase EJN92_20960 PF13492 GAF domain EJN92_20960 PF07694 5TMR of 5TMR-LYT EJN92_20960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_20965 PF00206 Lyase EJN92_20965 PF14698 Argininosuccinate lyase C-terminal EJN92_20975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EJN92_20980 PF03480 Bacterial extracellular solute-binding protein, family 7 EJN92_20985 PF01523 Putative modulator of DNA gyrase EJN92_20990 PF04751 Protein of unknown function (DUF615) EJN92_20995 PF00994 Probable molybdopterin binding domain EJN92_21000 PF02230 Phospholipase/Carboxylesterase EJN92_21005 PF01053 Cys/Met metabolism PLP-dependent enzyme EJN92_21010 PF00034 Cytochrome c EJN92_21015 PF00115 Cytochrome C and Quinol oxidase polypeptide I EJN92_21020 PF00510 Cytochrome c oxidase subunit III EJN92_21030 PF08406 CbbQ/NirQ/NorQ C-terminal EJN92_21030 PF07728 AAA domain (dynein-related subfamily) EJN92_21060 PF01219 Prokaryotic diacylglycerol kinase EJN92_21065 PF09339 IclR helix-turn-helix domain EJN92_21065 PF01614 Bacterial transcriptional regulator EJN92_21070 PF10502 Signal peptidase, peptidase S26 EJN92_21075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EJN92_21075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EJN92_21080 PF00583 Acetyltransferase (GNAT) family EJN92_21085 PF02779 Transketolase, pyrimidine binding domain EJN92_21085 PF02780 Transketolase, C-terminal domain EJN92_21085 PF00456 Transketolase, thiamine diphosphate binding domain EJN92_21090 PF00990 Diguanylate cyclase, GGDEF domain EJN92_21090 PF00563 EAL domain EJN92_21090 PF03707 Bacterial signalling protein N terminal repeat EJN92_21095 PF04452 RNA methyltransferase EJN92_21120 PF05175 Methyltransferase small domain EJN92_21130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_21130 PF03466 LysR substrate binding domain EJN92_21140 PF03350 Uncharacterized protein family, UPF0114 EJN92_21160 PF03466 LysR substrate binding domain EJN92_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_21170 PF06574 FAD synthetase EJN92_21170 PF01687 Riboflavin kinase EJN92_21175 PF08264 Anticodon-binding domain of tRNA EJN92_21175 PF00133 tRNA synthetases class I (I, L, M and V) EJN92_21175 PF06827 Zinc finger found in FPG and IleRS EJN92_21180 PF01252 Signal peptidase (SPase) II EJN92_21185 PF02441 Flavoprotein EJN92_21185 PF04127 DNA / pantothenate metabolism flavoprotein EJN92_21190 PF00692 dUTPase EJN92_21195 PF00929 Exonuclease EJN92_21200 PF01435 Peptidase family M48 EJN92_21205 PF01329 Pterin 4 alpha carbinolamine dehydratase EJN92_21210 PF03193 RsgA GTPase EJN92_21220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EJN92_21220 PF03466 LysR substrate binding domain EJN92_21225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_21225 PF00512 His Kinase A (phospho-acceptor) domain EJN92_21225 PF13426 PAS domain EJN92_21225 PF00672 HAMP domain EJN92_21225 PF14827 Double sensory domain of two-component sensor kinase EJN92_21235 PF03575 Peptidase family S51 EJN92_21255 PF00005 ABC transporter EJN92_21260 PF02687 FtsX-like permease family EJN92_21260 PF12704 MacB-like periplasmic core domain EJN92_21270 PF01368 DHH family EJN92_21270 PF17768 RecJ OB domain EJN92_21270 PF02272 DHHA1 domain EJN92_21275 PF01431 Peptidase family M13 EJN92_21275 PF05649 Peptidase family M13 EJN92_21290 PF02652 L-lactate permease EJN92_21295 PF00484 Carbonic anhydrase EJN92_21300 PF01435 Peptidase family M48 EJN92_21300 PF16491 CAAX prenyl protease N-terminal, five membrane helices EJN92_21305 PF03922 OmpW family EJN92_21310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EJN92_21310 PF00512 His Kinase A (phospho-acceptor) domain EJN92_21310 PF13426 PAS domain EJN92_21310 PF13188 PAS domain EJN92_21310 PF00989 PAS fold EJN92_21315 PF00682 HMGL-like EJN92_21315 PF08502 LeuA allosteric (dimerisation) domain EJN92_21320 PF00375 Sodium:dicarboxylate symporter family