locus-tag class description UNDKW_0001 PF00308 Bacterial dnaA protein UNDKW_0001 PF08299 Bacterial dnaA protein helix-turn-helix UNDKW_0001 PF11638 DnaA N-terminal domain UNDKW_0002 PF02767 DNA polymerase III beta subunit, central domain UNDKW_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain UNDKW_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain UNDKW_0003 PF01751 Toprim domain UNDKW_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0003 PF18053 DNA gyrase B subunit insert domain UNDKW_0003 PF00986 DNA gyrase B subunit, carboxyl terminus UNDKW_0003 PF00204 DNA gyrase B UNDKW_0006 PF01381 Helix-turn-helix UNDKW_0008 PF00574 Clp protease UNDKW_0009 PF07687 Peptidase dimerisation domain UNDKW_0009 PF01546 Peptidase family M20/M25/M40 UNDKW_0011 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0012 PF12911 N-terminal TM domain of oligopeptide transport permease C UNDKW_0012 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0013 PF00005 ABC transporter UNDKW_0013 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UNDKW_0014 PF00005 ABC transporter UNDKW_0014 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UNDKW_0017 PF05675 Protein of unknown function (DUF817) UNDKW_0019 PF13609 Gram-negative porin UNDKW_0024 PF12680 SnoaL-like domain UNDKW_0024 PF08281 Sigma-70, region 4 UNDKW_0024 PF04542 Sigma-70 region 2 UNDKW_0025 PF02627 Carboxymuconolactone decarboxylase family UNDKW_0028 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit UNDKW_0038 PF00962 Adenosine/AMP deaminase UNDKW_0039 PF12091 Protein of unknown function (DUF3567) UNDKW_0041 PF02954 Bacterial regulatory protein, Fis family UNDKW_0041 PF00072 Response regulator receiver domain UNDKW_0041 PF00158 Sigma-54 interaction domain UNDKW_0042 PF00672 HAMP domain UNDKW_0042 PF00989 PAS fold UNDKW_0042 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0044 PF01029 NusB family UNDKW_0044 PF01189 16S rRNA methyltransferase RsmB/F UNDKW_0045 PF12146 Serine aminopeptidase, S33 UNDKW_0052 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0052 PF00989 PAS fold UNDKW_0052 PF13188 PAS domain UNDKW_0052 PF13426 PAS domain UNDKW_0053 PF00672 HAMP domain UNDKW_0053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0053 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0053 PF01627 Hpt domain UNDKW_0053 PF00072 Response regulator receiver domain UNDKW_0053 PF17149 Periplasmic sensor domain found in signal transduction proteins UNDKW_0057 PF13335 Magnesium chelatase, subunit ChlI C-terminal UNDKW_0057 PF01078 Magnesium chelatase, subunit ChlI UNDKW_0059 PF00665 Integrase core domain UNDKW_0072 PF02463 RecF/RecN/SMC N terminal domain UNDKW_0075 PF13335 Magnesium chelatase, subunit ChlI C-terminal UNDKW_0075 PF01078 Magnesium chelatase, subunit ChlI UNDKW_0076 PF04380 Membrane fusogenic activity UNDKW_0078 PF00543 Nitrogen regulatory protein P-II UNDKW_0080 PF00909 Ammonium Transporter Family UNDKW_0084 PF00563 EAL domain UNDKW_0084 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0084 PF08448 PAS fold UNDKW_0086 PF01212 Beta-eliminating lyase UNDKW_0091 PF00158 Sigma-54 interaction domain UNDKW_0091 PF01590 GAF domain UNDKW_0093 PF00069 Protein kinase domain UNDKW_0093 PF03793 PASTA domain UNDKW_0094 PF01205 Uncharacterized protein family UPF0029 UNDKW_0094 PF09186 Domain of unknown function (DUF1949) UNDKW_0095 PF01791 DeoC/LacD family aldolase UNDKW_0096 PF00591 Glycosyl transferase family, a/b domain UNDKW_0096 PF02885 Glycosyl transferase family, helical bundle domain UNDKW_0096 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain UNDKW_0097 PF01048 Phosphorylase superfamily UNDKW_0099 PF00005 ABC transporter UNDKW_0099 PF12848 ABC transporter UNDKW_0100 PF03922 OmpW family UNDKW_0102 PF00005 ABC transporter UNDKW_0103 PF00005 ABC transporter UNDKW_0103 PF02687 FtsX-like permease family UNDKW_0103 PF12704 MacB-like periplasmic core domain UNDKW_0104 PF12704 MacB-like periplasmic core domain UNDKW_0104 PF02687 FtsX-like permease family UNDKW_0104 PF00005 ABC transporter UNDKW_0105 PF00158 Sigma-54 interaction domain UNDKW_0105 PF00072 Response regulator receiver domain UNDKW_0106 PF00989 PAS fold UNDKW_0106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0106 PF00672 HAMP domain UNDKW_0106 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0111 PF00069 Protein kinase domain UNDKW_0113 PF00557 Metallopeptidase family M24 UNDKW_0113 PF01321 Creatinase/Prolidase N-terminal domain UNDKW_0114 PF07715 TonB-dependent Receptor Plug Domain UNDKW_0114 PF00593 TonB dependent receptor UNDKW_0115 PF01752 Collagenase UNDKW_0115 PF08453 Peptidase family M9 N-terminal UNDKW_0122 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0122 PF00563 EAL domain UNDKW_0122 PF03707 Bacterial signalling protein N terminal repeat UNDKW_0123 PF00563 EAL domain UNDKW_0123 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0123 PF03707 Bacterial signalling protein N terminal repeat UNDKW_0125 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0127 PF01037 Lrp/AsnC ligand binding domain UNDKW_0128 PF03466 LysR substrate binding domain UNDKW_0128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0129 PF07694 5TMR of 5TMR-LYT UNDKW_0129 PF13492 GAF domain UNDKW_0129 PF06580 Histidine kinase UNDKW_0130 PF04397 LytTr DNA-binding domain UNDKW_0130 PF00072 Response regulator receiver domain UNDKW_0133 PF03466 LysR substrate binding domain UNDKW_0133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0134 PF01547 Bacterial extracellular solute-binding protein UNDKW_0136 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0137 PF08402 TOBE domain UNDKW_0137 PF00005 ABC transporter UNDKW_0138 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UNDKW_0138 PF00356 Bacterial regulatory proteins, lacI family UNDKW_0139 PF00232 Glycosyl hydrolase family 1 UNDKW_0140 PF07715 TonB-dependent Receptor Plug Domain UNDKW_0140 PF00593 TonB dependent receptor UNDKW_0142 PF00722 Glycosyl hydrolases family 16 UNDKW_0143 PF01915 Glycosyl hydrolase family 3 C-terminal domain UNDKW_0143 PF00933 Glycosyl hydrolase family 3 N terminal domain UNDKW_0143 PF14310 Fibronectin type III-like domain UNDKW_0144 PF01380 SIS domain UNDKW_0144 PF02685 Glucokinase UNDKW_0144 PF01418 Helix-turn-helix domain, rpiR family UNDKW_0145 PF07690 Major Facilitator Superfamily UNDKW_0149 PF02310 B12 binding domain UNDKW_0149 PF01642 Methylmalonyl-CoA mutase UNDKW_0152 PF12832 MFS_1 like family UNDKW_0156 PF00356 Bacterial regulatory proteins, lacI family UNDKW_0165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0165 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0165 PF09456 RcsC Alpha-Beta-Loop (ABL) UNDKW_0165 PF00072 Response regulator receiver domain UNDKW_0166 PF03831 PhnA domain UNDKW_0166 PF08274 PhnA Zinc-Ribbon UNDKW_0170 PF00175 Oxidoreductase NAD-binding domain UNDKW_0170 PF00258 Flavodoxin UNDKW_0170 PF00667 FAD binding domain UNDKW_0171 PF02424 ApbE family UNDKW_0175 PF12804 MobA-like NTP transferase domain UNDKW_0175 PF14602 Hexapeptide repeat of succinyl-transferase UNDKW_0175 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_0177 PF13609 Gram-negative porin UNDKW_0178 PF00106 short chain dehydrogenase UNDKW_0179 PF00596 Class II Aldolase and Adducin N-terminal domain UNDKW_0184 PF01037 Lrp/AsnC ligand binding domain UNDKW_0185 PF01380 SIS domain UNDKW_0188 PF01420 Type I restriction modification DNA specificity domain UNDKW_0189 PF02384 N-6 DNA Methylase UNDKW_0189 PF12161 HsdM N-terminal domain UNDKW_0200 PF16861 Carbamoyltransferase C-terminus UNDKW_0200 PF02543 Carbamoyltransferase N-terminus UNDKW_0202 PF13358 DDE superfamily endonuclease UNDKW_0207 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding UNDKW_0207 PF18381 YcaO cyclodehydratase C-terminal domain UNDKW_0209 PF01048 Phosphorylase superfamily UNDKW_0212 PF00196 Bacterial regulatory proteins, luxR family UNDKW_0212 PF00072 Response regulator receiver domain UNDKW_0213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0213 PF07730 Histidine kinase UNDKW_0215 PF05230 MASE2 domain UNDKW_0215 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0216 PF00392 Bacterial regulatory proteins, gntR family UNDKW_0216 PF00155 Aminotransferase class I and II UNDKW_0223 PF00005 ABC transporter UNDKW_0225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0225 PF03466 LysR substrate binding domain UNDKW_0231 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_0232 PF13426 PAS domain UNDKW_0232 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0232 PF00672 HAMP domain UNDKW_0234 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_0236 PF00266 Aminotransferase class-V UNDKW_0237 PF00440 Bacterial regulatory proteins, tetR family UNDKW_0237 PF13305 Tetracyclin repressor-like, C-terminal domain UNDKW_0239 PF00561 alpha/beta hydrolase fold UNDKW_0240 PF07690 Major Facilitator Superfamily UNDKW_0246 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family UNDKW_0249 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family UNDKW_0249 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain UNDKW_0250 PF02540 NAD synthase UNDKW_0250 PF00795 Carbon-nitrogen hydrolase UNDKW_0252 PF01467 Cytidylyltransferase-like UNDKW_0252 PF00293 NUDIX domain UNDKW_0254 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0254 PF08521 Two-component sensor kinase N-terminal UNDKW_0255 PF00072 Response regulator receiver domain UNDKW_0255 PF00486 Transcriptional regulatory protein, C terminal UNDKW_0256 PF01292 Prokaryotic cytochrome b561 UNDKW_0257 PF01370 NAD dependent epimerase/dehydratase family UNDKW_0258 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus UNDKW_0258 PF08666 SAF domain UNDKW_0259 PF00392 Bacterial regulatory proteins, gntR family UNDKW_0259 PF07729 FCD domain UNDKW_0260 PF07715 TonB-dependent Receptor Plug Domain UNDKW_0260 PF00593 TonB dependent receptor UNDKW_0262 PF00295 Glycosyl hydrolases family 28 UNDKW_0265 PF07690 Major Facilitator Superfamily UNDKW_0266 PF00171 Aldehyde dehydrogenase family UNDKW_0267 PF00701 Dihydrodipicolinate synthetase family UNDKW_0268 PF07729 FCD domain UNDKW_0268 PF00392 Bacterial regulatory proteins, gntR family UNDKW_0274 PF00684 DnaJ central domain UNDKW_0274 PF01556 DnaJ C terminal domain UNDKW_0274 PF00226 DnaJ domain UNDKW_0276 PF00909 Ammonium Transporter Family UNDKW_0279 PF03060 Nitronate monooxygenase UNDKW_0280 PF05971 RNA methyltransferase UNDKW_0282 PF01037 Lrp/AsnC ligand binding domain UNDKW_0284 PF13411 MerR HTH family regulatory protein UNDKW_0286 PF00486 Transcriptional regulatory protein, C terminal UNDKW_0286 PF00072 Response regulator receiver domain UNDKW_0287 PF00672 HAMP domain UNDKW_0287 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0289 PF00265 Thymidine kinase UNDKW_0290 PF00011 Hsp20/alpha crystallin family UNDKW_0291 PF00011 Hsp20/alpha crystallin family UNDKW_0293 PF01070 FMN-dependent dehydrogenase UNDKW_0294 PF03466 LysR substrate binding domain UNDKW_0294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0295 PF04209 homogentisate 1,2-dioxygenase UNDKW_0299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0299 PF03466 LysR substrate binding domain UNDKW_0300 PF00593 TonB dependent receptor UNDKW_0300 PF07715 TonB-dependent Receptor Plug Domain UNDKW_0303 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_0303 PF00005 ABC transporter UNDKW_0304 PF00005 ABC transporter UNDKW_0307 PF13302 Acetyltransferase (GNAT) domain UNDKW_0309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0309 PF03466 LysR substrate binding domain UNDKW_0310 PF02525 Flavodoxin-like fold UNDKW_0311 PF02678 Pirin UNDKW_0311 PF05726 Pirin C-terminal cupin domain UNDKW_0313 PF00005 ABC transporter UNDKW_0315 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0317 PF06299 Protein of unknown function (DUF1045) UNDKW_0318 PF07969 Amidohydrolase family UNDKW_0319 PF06754 Phosphonate metabolism protein PhnG UNDKW_0320 PF05845 Bacterial phosphonate metabolism protein (PhnH) UNDKW_0321 PF05861 Bacterial phosphonate metabolism protein (PhnI) UNDKW_0322 PF06007 Phosphonate metabolism protein PhnJ UNDKW_0323 PF00005 ABC transporter UNDKW_0324 PF00005 ABC transporter UNDKW_0325 PF07969 Amidohydrolase family UNDKW_0326 PF01171 PP-loop family UNDKW_0331 PF00072 Response regulator receiver domain UNDKW_0333 PF01810 LysE type translocator UNDKW_0335 PF03960 ArsC family UNDKW_0336 PF01169 Uncharacterized protein family UPF0016 UNDKW_0337 PF02308 MgtC family UNDKW_0338 PF00440 Bacterial regulatory proteins, tetR family UNDKW_0338 PF17932 Tetracyclin repressor-like, C-terminal domain UNDKW_0339 PF03143 Elongation factor Tu C-terminal domain UNDKW_0339 PF00009 Elongation factor Tu GTP binding domain UNDKW_0339 PF03144 Elongation factor Tu domain 2 UNDKW_0341 PF00467 KOW motif UNDKW_0341 PF02357 Transcription termination factor nusG UNDKW_0342 PF00298 Ribosomal protein L11, RNA binding domain UNDKW_0342 PF03946 Ribosomal protein L11, N-terminal domain UNDKW_0343 PF00687 Ribosomal protein L1p/L10e family UNDKW_0344 PF00466 Ribosomal protein L10 UNDKW_0345 PF00542 Ribosomal protein L7/L12 C-terminal domain UNDKW_0345 PF16320 Ribosomal protein L7/L12 dimerisation domain UNDKW_0346 PF04565 RNA polymerase Rpb2, domain 3 UNDKW_0346 PF04561 RNA polymerase Rpb2, domain 2 UNDKW_0346 PF04563 RNA polymerase beta subunit UNDKW_0346 PF00562 RNA polymerase Rpb2, domain 6 UNDKW_0346 PF04560 RNA polymerase Rpb2, domain 7 UNDKW_0346 PF10385 RNA polymerase beta subunit external 1 domain UNDKW_0347 PF05000 RNA polymerase Rpb1, domain 4 UNDKW_0347 PF04998 RNA polymerase Rpb1, domain 5 UNDKW_0347 PF04983 RNA polymerase Rpb1, domain 3 UNDKW_0347 PF00623 RNA polymerase Rpb1, domain 2 UNDKW_0347 PF04997 RNA polymerase Rpb1, domain 1 UNDKW_0348 PF03099 Biotin/lipoate A/B protein ligase family UNDKW_0348 PF02237 Biotin protein ligase C terminal domain UNDKW_0349 PF03309 Type III pantothenate kinase UNDKW_0354 PF01979 Amidohydrolase family UNDKW_0355 PF00793 DAHP synthetase I family UNDKW_0359 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain UNDKW_0359 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain UNDKW_0360 PF01037 Lrp/AsnC ligand binding domain UNDKW_0362 PF00578 AhpC/TSA family UNDKW_0363 PF03358 NADPH-dependent FMN reductase UNDKW_0364 PF07238 PilZ domain UNDKW_0364 PF07317 Flagellar regulator YcgR UNDKW_0365 PF00690 Cation transporter/ATPase, N-terminus UNDKW_0365 PF00689 Cation transporting ATPase, C-terminus UNDKW_0366 PF12833 Helix-turn-helix domain UNDKW_0367 PF11862 Domain of unknown function (DUF3382) UNDKW_0367 PF02653 Branched-chain amino acid transport system / permease component UNDKW_0371 PF00768 D-alanyl-D-alanine carboxypeptidase UNDKW_0372 PF07715 TonB-dependent Receptor Plug Domain UNDKW_0372 PF00593 TonB dependent receptor UNDKW_0373 PF00144 Beta-lactamase UNDKW_0374 PF09827 CRISPR associated protein Cas2 UNDKW_0376 PF18070 CRISPR-Cas9 PI domain UNDKW_0376 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 UNDKW_0376 PF13395 HNH endonuclease UNDKW_0376 PF18061 CRISPR-Cas9 WED domain UNDKW_0376 PF18541 RuvC endonuclease subdomain 3 UNDKW_0378 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III UNDKW_0378 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UNDKW_0379 PF00756 Putative esterase UNDKW_0380 PF00107 Zinc-binding dehydrogenase UNDKW_0380 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_0385 PF03471 Transporter associated domain UNDKW_0385 PF00571 CBS domain UNDKW_0386 PF00563 EAL domain UNDKW_0386 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0386 PF03707 Bacterial signalling protein N terminal repeat UNDKW_0387 PF00365 Phosphofructokinase UNDKW_0390 PF00753 Metallo-beta-lactamase superfamily UNDKW_0392 PF01022 Bacterial regulatory protein, arsR family UNDKW_0394 PF00873 AcrB/AcrD/AcrF family UNDKW_0398 PF11871 Domain of unknown function (DUF3391) UNDKW_0398 PF01966 HD domain UNDKW_0399 PF00392 Bacterial regulatory proteins, gntR family UNDKW_0399 PF07729 FCD domain UNDKW_0400 PF03480 Bacterial extracellular solute-binding protein, family 7 UNDKW_0402 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component UNDKW_0403 PF16957 Malonate decarboxylase, alpha subunit, transporter UNDKW_0404 PF06857 Malonate decarboxylase delta subunit (MdcD) UNDKW_0405 PF01039 Carboxyl transferase domain UNDKW_0407 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG UNDKW_0408 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase UNDKW_0411 PF01176 Translation initiation factor 1A / IF-1 UNDKW_0414 PF00753 Metallo-beta-lactamase superfamily UNDKW_0417 PF00144 Beta-lactamase UNDKW_0422 PF02195 ParB-like nuclease domain UNDKW_0435 PF01381 Helix-turn-helix UNDKW_0438 PF04055 Radical SAM superfamily UNDKW_0439 PF02567 Phenazine biosynthesis-like protein UNDKW_0440 PF00857 Isochorismatase family UNDKW_0442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0442 PF03466 LysR substrate binding domain UNDKW_0443 PF04359 Protein of unknown function (DUF493) UNDKW_0444 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0444 PF03466 LysR substrate binding domain UNDKW_0446 PF01063 Amino-transferase class IV UNDKW_0447 PF00768 D-alanyl-D-alanine carboxypeptidase UNDKW_0447 PF07943 Penicillin-binding protein 5, C-terminal domain UNDKW_0448 PF02129 X-Pro dipeptidyl-peptidase (S15 family) UNDKW_0453 PF00005 ABC transporter UNDKW_0454 PF02405 Permease MlaE UNDKW_0455 PF00884 Sulfatase UNDKW_0457 PF00164 Ribosomal protein S12/S23 UNDKW_0458 PF00177 Ribosomal protein S7p/S5e UNDKW_0459 PF00009 Elongation factor Tu GTP binding domain UNDKW_0459 PF03764 Elongation factor G, domain IV UNDKW_0459 PF14492 Elongation Factor G, domain II UNDKW_0459 PF00679 Elongation factor G C-terminus UNDKW_0459 PF03144 Elongation factor Tu domain 2 UNDKW_0460 PF03143 Elongation factor Tu C-terminal domain UNDKW_0460 PF03144 Elongation factor Tu domain 2 UNDKW_0460 PF00009 Elongation factor Tu GTP binding domain UNDKW_0461 PF00338 Ribosomal protein S10p/S20e UNDKW_0462 PF00297 Ribosomal protein L3 UNDKW_0463 PF00573 Ribosomal protein L4/L1 family UNDKW_0464 PF00276 Ribosomal protein L23 UNDKW_0465 PF00181 Ribosomal Proteins L2, RNA binding domain UNDKW_0465 PF03947 Ribosomal Proteins L2, C-terminal domain UNDKW_0466 PF00203 Ribosomal protein S19 UNDKW_0467 PF00237 Ribosomal protein L22p/L17e UNDKW_0468 PF07650 KH domain UNDKW_0468 PF00189 Ribosomal protein S3, C-terminal domain UNDKW_0469 PF00252 Ribosomal protein L16p/L10e UNDKW_0470 PF00831 Ribosomal L29 protein UNDKW_0471 PF00366 Ribosomal protein S17 UNDKW_0472 PF00238 Ribosomal protein L14p/L23e UNDKW_0473 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UNDKW_0474 PF00673 ribosomal L5P family C-terminus UNDKW_0474 PF00281 Ribosomal protein L5 UNDKW_0475 PF00253 Ribosomal protein S14p/S29e UNDKW_0476 PF00410 Ribosomal protein S8 UNDKW_0477 PF00347 Ribosomal protein L6 UNDKW_0478 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast UNDKW_0479 PF03719 Ribosomal protein S5, C-terminal domain UNDKW_0479 PF00333 Ribosomal protein S5, N-terminal domain UNDKW_0480 PF00327 Ribosomal protein L30p/L7e UNDKW_0481 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UNDKW_0482 PF00344 SecY translocase UNDKW_0483 PF01176 Translation initiation factor 1A / IF-1 UNDKW_0484 PF00416 Ribosomal protein S13/S18 UNDKW_0485 PF00411 Ribosomal protein S11 UNDKW_0486 PF01479 S4 domain UNDKW_0486 PF00163 Ribosomal protein S4/S9 N-terminal domain UNDKW_0487 PF01000 RNA polymerase Rpb3/RpoA insert domain UNDKW_0487 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain UNDKW_0487 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain UNDKW_0488 PF01196 Ribosomal protein L17 UNDKW_0490 PF11412 Disulphide bond corrector protein DsbC UNDKW_0490 PF02683 Cytochrome C biogenesis protein transmembrane region UNDKW_0491 PF10417 C-terminal domain of 1-Cys peroxiredoxin UNDKW_0491 PF00578 AhpC/TSA family UNDKW_0492 PF00929 Exonuclease UNDKW_0492 PF08411 Exonuclease C-terminal UNDKW_0493 PF01544 CorA-like Mg2+ transporter protein UNDKW_0494 PF04116 Fatty acid hydroxylase superfamily UNDKW_0495 PF07947 YhhN family UNDKW_0496 PF00490 Delta-aminolevulinic acid dehydratase UNDKW_0497 PF01926 50S ribosome-binding GTPase UNDKW_0498 PF00034 Cytochrome c UNDKW_0499 PF05140 ResB-like family UNDKW_0500 PF01578 Cytochrome C assembly protein UNDKW_0501 PF00174 Oxidoreductase molybdopterin binding domain UNDKW_0502 PF01794 Ferric reductase like transmembrane component UNDKW_0504 PF01491 Frataxin-like domain UNDKW_0505 PF17092 Penicillin-binding protein OB-like domain UNDKW_0505 PF00912 Transglycosylase UNDKW_0505 PF00905 Penicillin binding protein transpeptidase domain UNDKW_0510 PF11741 AMIN domain UNDKW_0510 PF00263 Bacterial type II and III secretion system protein UNDKW_0510 PF03958 Bacterial type II/III secretion system short domain UNDKW_0510 PF07660 Secretin and TonB N terminus short domain UNDKW_0512 PF01761 3-dehydroquinate synthase UNDKW_0513 PF13286 Phosphohydrolase-associated domain UNDKW_0513 PF01966 HD domain UNDKW_0518 PF00005 ABC transporter UNDKW_0518 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_0519 PF00005 ABC transporter UNDKW_0520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_0520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_0520 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_0521 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein UNDKW_0522 PF00309 Sigma-54 factor, Activator interacting domain (AID) UNDKW_0522 PF04552 Sigma-54, DNA binding domain UNDKW_0522 PF04963 Sigma-54 factor, core binding domain UNDKW_0523 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_0523 PF00005 ABC transporter UNDKW_0527 PF01380 SIS domain UNDKW_0527 PF00571 CBS domain UNDKW_0528 PF00999 Sodium/hydrogen exchanger family UNDKW_0528 PF02080 TrkA-C domain UNDKW_0528 PF02254 TrkA-N domain UNDKW_0529 PF02254 TrkA-N domain UNDKW_0529 PF00999 Sodium/hydrogen exchanger family UNDKW_0530 PF00156 Phosphoribosyl transferase domain UNDKW_0532 PF05221 S-adenosyl-L-homocysteine hydrolase UNDKW_0532 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UNDKW_0533 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV UNDKW_0534 PF02219 Methylenetetrahydrofolate reductase UNDKW_0538 PF01037 Lrp/AsnC ligand binding domain UNDKW_0539 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_0541 PF17092 Penicillin-binding protein OB-like domain UNDKW_0541 PF00905 Penicillin binding protein transpeptidase domain UNDKW_0541 PF00912 Transglycosylase UNDKW_0542 PF00005 ABC transporter UNDKW_0542 PF00664 ABC transporter transmembrane region UNDKW_0543 PF00664 ABC transporter transmembrane region UNDKW_0543 PF00005 ABC transporter UNDKW_0544 PF07228 Stage II sporulation protein E (SpoIIE) UNDKW_0544 PF00672 HAMP domain UNDKW_0548 PF00326 Prolyl oligopeptidase family UNDKW_0548 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain UNDKW_0549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0549 PF00672 HAMP domain UNDKW_0549 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0554 PF13533 Biotin-lipoyl like UNDKW_0557 PF00005 ABC transporter UNDKW_0557 PF00664 ABC transporter transmembrane region UNDKW_0557 PF03412 Peptidase C39 family UNDKW_0560 PF04107 Glutamate-cysteine ligase family 2(GCS2) UNDKW_0561 PF02824 TGS domain UNDKW_0561 PF04607 Region found in RelA / SpoT proteins UNDKW_0561 PF13291 ACT domain UNDKW_0562 PF00857 Isochorismatase family UNDKW_0564 PF06123 Inner membrane protein CreD UNDKW_0565 PF00672 HAMP domain UNDKW_0565 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0566 PF00486 Transcriptional regulatory protein, C terminal UNDKW_0566 PF00072 Response regulator receiver domain UNDKW_0567 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UNDKW_0568 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0568 PF00072 Response regulator receiver domain UNDKW_0571 PF01156 Inosine-uridine preferring nucleoside hydrolase UNDKW_0576 PF00294 pfkB family carbohydrate kinase UNDKW_0578 PF01177 Asp/Glu/Hydantoin racemase UNDKW_0583 PF00294 pfkB family carbohydrate kinase UNDKW_0584 PF04227 Indigoidine synthase A like protein UNDKW_0591 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) UNDKW_0592 PF01797 Transposase IS200 like UNDKW_0595 PF02633 Creatinine amidohydrolase UNDKW_0596 PF07237 Protein of unknown function (DUF1428) UNDKW_0598 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0598 PF03466 LysR substrate binding domain UNDKW_0601 PF00117 Glutamine amidotransferase class-I UNDKW_0602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0602 PF03466 LysR substrate binding domain UNDKW_0605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0605 PF03466 LysR substrate binding domain UNDKW_0607 PF00149 Calcineurin-like phosphoesterase UNDKW_0611 PF00144 Beta-lactamase UNDKW_0613 PF00553 Cellulose binding domain UNDKW_0613 PF00041 Fibronectin type III domain UNDKW_0613 PF00704 Glycosyl hydrolases family 18 UNDKW_0615 PF00041 Fibronectin type III domain UNDKW_0615 PF00704 Glycosyl hydrolases family 18 UNDKW_0618 PF00400 WD domain, G-beta repeat UNDKW_0618 PF12894 Anaphase-promoting complex subunit 4 WD40 domain UNDKW_0620 PF00665 Integrase core domain UNDKW_0621 PF00154 recA bacterial DNA recombination protein UNDKW_0622 PF02631 RecX family UNDKW_0624 PF08442 ATP-grasp domain UNDKW_0624 PF00549 CoA-ligase UNDKW_0625 PF00549 CoA-ligase UNDKW_0625 PF02629 CoA binding domain UNDKW_0628 PF07963 Prokaryotic N-terminal methylation motif UNDKW_0628 PF00114 Pilin (bacterial filament) UNDKW_0629 PF00114 Pilin (bacterial filament) UNDKW_0629 PF07963 Prokaryotic N-terminal methylation motif UNDKW_0632 PF14693 Ribosomal protein TL5, C-terminal domain UNDKW_0632 PF01386 Ribosomal L25p family UNDKW_0633 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase UNDKW_0633 PF14572 Phosphoribosyl synthetase-associated domain UNDKW_0634 PF00288 GHMP kinases N terminal domain UNDKW_0634 PF08544 GHMP kinases C terminal UNDKW_0635 PF03550 Outer membrane lipoprotein LolB UNDKW_0637 PF06827 Zinc finger found in FPG and IleRS UNDKW_0637 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain UNDKW_0637 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain UNDKW_0639 PF14815 NUDIX domain UNDKW_0639 PF00730 HhH-GPD superfamily base excision DNA repair protein UNDKW_0639 PF00633 Helix-hairpin-helix motif UNDKW_0641 PF00005 ABC transporter UNDKW_0642 PF12679 ABC-2 family transporter protein UNDKW_0644 PF13302 Acetyltransferase (GNAT) domain UNDKW_0644 PF13673 Acetyltransferase (GNAT) domain UNDKW_0644 PF03352 Methyladenine glycosylase UNDKW_0644 PF00117 Glutamine amidotransferase class-I UNDKW_0644 PF00958 GMP synthase C terminal domain UNDKW_0649 PF14403 Circularly permuted ATP-grasp type 2 UNDKW_0653 PF02548 Ketopantoate hydroxymethyltransferase UNDKW_0655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) UNDKW_0656 PF12627 Probable RNA and SrmB- binding site of polymerase A UNDKW_0656 PF12626 Polymerase A arginine-rich C-terminus UNDKW_0656 PF01743 Poly A polymerase head domain UNDKW_0658 PF00308 Bacterial dnaA protein UNDKW_0659 PF01594 AI-2E family transporter UNDKW_0660 PF00586 AIR synthase related protein, N-terminal domain UNDKW_0660 PF02769 AIR synthase related protein, C-terminal domain UNDKW_0668 PF03668 P-loop ATPase protein family UNDKW_0669 PF02603 HPr Serine kinase N terminus UNDKW_0669 PF07475 HPr Serine kinase C-terminal domain UNDKW_0670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UNDKW_0671 PF03707 Bacterial signalling protein N terminal repeat UNDKW_0671 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0671 PF00563 EAL domain UNDKW_0673 PF14489 QueF-like protein UNDKW_0673 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term UNDKW_0674 PF00585 C-terminal regulatory domain of Threonine dehydratase UNDKW_0674 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_0675 PF09335 SNARE associated Golgi protein UNDKW_0684 PF00107 Zinc-binding dehydrogenase UNDKW_0684 PF16884 N-terminal domain of oxidoreductase UNDKW_0685 PF03466 LysR substrate binding domain UNDKW_0685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0686 PF01209 ubiE/COQ5 methyltransferase family UNDKW_0689 PF03109 ABC1 family UNDKW_0692 PF13091 PLD-like domain UNDKW_0695 PF01470 Pyroglutamyl peptidase UNDKW_0699 PF04397 LytTr DNA-binding domain UNDKW_0699 PF00072 Response regulator receiver domain UNDKW_0700 PF06580 Histidine kinase UNDKW_0700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0700 PF00672 HAMP domain UNDKW_0700 PF02743 Cache domain UNDKW_0710 PF01613 Flavin reductase like domain UNDKW_0711 PF01037 Lrp/AsnC ligand binding domain UNDKW_0719 PF12320 Type 5 capsule protein repressor C-terminal domain UNDKW_0719 PF00149 Calcineurin-like phosphoesterase UNDKW_0724 PF00474 Sodium:solute symporter family UNDKW_0727 PF01336 OB-fold nucleic acid binding domain UNDKW_0727 PF02938 GAD domain UNDKW_0727 PF00152 tRNA synthetases class II (D, K and N) UNDKW_0730 PF00293 NUDIX domain UNDKW_0731 PF03372 Endonuclease/Exonuclease/phosphatase family UNDKW_0732 PF13091 PLD-like domain UNDKW_0739 PF01479 S4 domain UNDKW_0741 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_0741 PF12806 Acetyl-CoA dehydrogenase C-terminal like UNDKW_0741 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_0741 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_0742 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_0742 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_0742 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_0743 PF00108 Thiolase, N-terminal domain UNDKW_0743 PF02803 Thiolase, C-terminal domain UNDKW_0745 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_0748 PF07690 Major Facilitator Superfamily UNDKW_0751 PF08546 Ketopantoate reductase PanE/ApbA C terminal UNDKW_0751 PF02558 Ketopantoate reductase PanE/ApbA UNDKW_0752 PF00501 AMP-binding enzyme UNDKW_0752 PF13193 AMP-binding enzyme C-terminal domain UNDKW_0754 PF01738 Dienelactone hydrolase family UNDKW_0755 PF02321 Outer membrane efflux protein UNDKW_0756 PF00873 AcrB/AcrD/AcrF family UNDKW_0757 PF00873 AcrB/AcrD/AcrF family UNDKW_0758 PF13533 Biotin-lipoyl like UNDKW_0760 PF06100 MCRA family UNDKW_0763 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain UNDKW_0763 PF06165 Glycosyltransferase family 36 UNDKW_0763 PF10091 Putative glucoamylase UNDKW_0765 PF06165 Glycosyltransferase family 36 UNDKW_0765 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain UNDKW_0766 PF10091 Putative glucoamylase UNDKW_0766 PF06165 Glycosyltransferase family 36 UNDKW_0766 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain UNDKW_0767 PF06165 Glycosyltransferase family 36 UNDKW_0767 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain UNDKW_0767 PF10091 Putative glucoamylase UNDKW_0769 PF05736 OprF membrane domain UNDKW_0769 PF00691 OmpA family UNDKW_0770 PF04972 BON domain UNDKW_0772 PF13091 PLD-like domain UNDKW_0772 PF13396 Phospholipase_D-nuclease N-terminal UNDKW_0773 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_0773 PF00107 Zinc-binding dehydrogenase UNDKW_0780 PF01389 OmpA-like transmembrane domain UNDKW_0780 PF00691 OmpA family UNDKW_0786 PF06956 Regulator of RNA terminal phosphate cyclase UNDKW_0786 PF00158 Sigma-54 interaction domain UNDKW_0789 PF01139 tRNA-splicing ligase RtcB UNDKW_0790 PF01137 RNA 3'-terminal phosphate cyclase UNDKW_0790 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain UNDKW_0793 PF01139 tRNA-splicing ligase RtcB UNDKW_0797 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UNDKW_0797 PF00205 Thiamine pyrophosphate enzyme, central domain UNDKW_0797 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UNDKW_0798 PF00563 EAL domain UNDKW_0798 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_0798 PF03707 Bacterial signalling protein N terminal repeat UNDKW_0799 PF02381 MraZ protein, putative antitoxin-like UNDKW_0800 PF01795 MraW methylase family UNDKW_0802 PF03717 Penicillin-binding Protein dimerisation domain UNDKW_0802 PF00905 Penicillin binding protein transpeptidase domain UNDKW_0803 PF02875 Mur ligase family, glutamate ligase domain UNDKW_0803 PF08245 Mur ligase middle domain UNDKW_0803 PF01225 Mur ligase family, catalytic domain UNDKW_0804 PF08245 Mur ligase middle domain UNDKW_0804 PF01225 Mur ligase family, catalytic domain UNDKW_0804 PF02875 Mur ligase family, glutamate ligase domain UNDKW_0805 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 UNDKW_0805 PF00953 Glycosyl transferase family 4 UNDKW_0806 PF02875 Mur ligase family, glutamate ligase domain UNDKW_0806 PF08245 Mur ligase middle domain UNDKW_0807 PF01098 Cell cycle protein UNDKW_0808 PF01098 Cell cycle protein UNDKW_0809 PF03033 Glycosyltransferase family 28 N-terminal domain UNDKW_0809 PF04101 Glycosyltransferase family 28 C-terminal domain UNDKW_0810 PF01225 Mur ligase family, catalytic domain UNDKW_0810 PF02875 Mur ligase family, glutamate ligase domain UNDKW_0810 PF08245 Mur ligase middle domain UNDKW_0811 PF01820 D-ala D-ala ligase N-terminus UNDKW_0811 PF07478 D-ala D-ala ligase C-terminus UNDKW_0812 PF08478 POTRA domain, FtsQ-type UNDKW_0812 PF03799 Cell division protein FtsQ UNDKW_0813 PF02491 SHS2 domain inserted in FTSA UNDKW_0814 PF00091 Tubulin/FtsZ family, GTPase domain UNDKW_0814 PF12327 FtsZ family, C-terminal domain UNDKW_0815 PF08534 Redoxin UNDKW_0816 PF00583 Acetyltransferase (GNAT) family UNDKW_0817 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase UNDKW_0819 PF01551 Peptidase family M23 UNDKW_0819 PF10145 Phage-related minor tail protein UNDKW_0819 PF01464 Transglycosylase SLT domain UNDKW_0820 PF07517 SecA DEAD-like domain UNDKW_0820 PF02810 SEC-C motif UNDKW_0820 PF01043 SecA preprotein cross-linking domain UNDKW_0820 PF07516 SecA Wing and Scaffold domain UNDKW_0821 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_0821 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_0821 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_0822 PF01960 ArgJ family UNDKW_0824 PF00293 NUDIX domain UNDKW_0825 PF01168 Alanine racemase, N-terminal domain UNDKW_0825 PF00842 Alanine racemase, C-terminal domain UNDKW_0826 PF01266 FAD dependent oxidoreductase UNDKW_0828 PF18024 Helix-turn-helix domain UNDKW_0828 PF00158 Sigma-54 interaction domain UNDKW_0829 PF03884 DNA gyrase inhibitor YacG UNDKW_0830 PF07072 Cell division protein UNDKW_0831 PF06750 Bacterial Peptidase A24 N-terminal domain UNDKW_0831 PF01478 Type IV leader peptidase family UNDKW_0832 PF00482 Type II secretion system (T2SS), protein F UNDKW_0833 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain UNDKW_0833 PF00437 Type II/IV secretion system protein UNDKW_0834 PF00348 Polyprenyl synthetase UNDKW_0835 PF00829 Ribosomal prokaryotic L21 protein UNDKW_0836 PF01016 Ribosomal L27 protein UNDKW_0837 PF01926 50S ribosome-binding GTPase UNDKW_0837 PF01018 GTP1/OBG UNDKW_0838 PF01472 PUA domain UNDKW_0838 PF00696 Amino acid kinase family UNDKW_0840 PF00293 NUDIX domain UNDKW_0841 PF03129 Anticodon binding domain UNDKW_0841 PF04073 Aminoacyl-tRNA editing domain UNDKW_0841 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UNDKW_0842 PF01464 Transglycosylase SLT domain UNDKW_0842 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain UNDKW_0847 PF00448 SRP54-type protein, GTPase domain UNDKW_0847 PF02978 Signal peptide binding domain UNDKW_0847 PF02881 SRP54-type protein, helical bundle domain UNDKW_0849 PF09084 NMT1/THI5 like UNDKW_0850 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0851 PF00005 ABC transporter UNDKW_0853 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0853 PF02743 Cache domain UNDKW_0853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0854 PF00072 Response regulator receiver domain UNDKW_0854 PF00158 Sigma-54 interaction domain UNDKW_0854 PF02954 Bacterial regulatory protein, Fis family UNDKW_0855 PF01578 Cytochrome C assembly protein UNDKW_0857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0857 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0858 PF00072 Response regulator receiver domain UNDKW_0858 PF00158 Sigma-54 interaction domain UNDKW_0858 PF02954 Bacterial regulatory protein, Fis family UNDKW_0859 PF02867 Ribonucleotide reductase, barrel domain UNDKW_0859 PF00317 Ribonucleotide reductase, all-alpha domain UNDKW_0859 PF03477 ATP cone domain UNDKW_0860 PF00268 Ribonucleotide reductase, small chain UNDKW_0862 PF02325 YGGT family UNDKW_0863 PF00356 Bacterial regulatory proteins, lacI family UNDKW_0864 PF07969 Amidohydrolase family UNDKW_0865 PF00202 Aminotransferase class-III UNDKW_0866 PF08543 Phosphomethylpyrimidine kinase UNDKW_0867 PF00301 Rubredoxin UNDKW_0868 PF00072 Response regulator receiver domain UNDKW_0869 PF00072 Response regulator receiver domain UNDKW_0871 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_0871 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term UNDKW_0872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0872 PF01627 Hpt domain UNDKW_0872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0872 PF07194 P2 response regulator binding domain UNDKW_0872 PF01584 CheW-like domain UNDKW_0872 PF02895 Signal transducing histidine kinase, homodimeric domain UNDKW_0872 PF01584 CheW-like domain UNDKW_0872 PF02895 Signal transducing histidine kinase, homodimeric domain UNDKW_0872 PF07194 P2 response regulator binding domain UNDKW_0872 PF01627 Hpt domain UNDKW_0873 PF00875 DNA photolyase UNDKW_0873 PF03441 FAD binding domain of DNA photolyase UNDKW_0874 PF02622 Uncharacterized ACR, COG1678 UNDKW_0875 PF03652 Holliday junction resolvase UNDKW_0876 PF00156 Phosphoribosyl transferase domain UNDKW_0877 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UNDKW_0877 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UNDKW_0878 PF01979 Amidohydrolase family UNDKW_0879 PF01553 Acyltransferase UNDKW_0880 PF00149 Calcineurin-like phosphoesterase UNDKW_0881 PF00762 Ferrochelatase UNDKW_0882 PF02463 RecF/RecN/SMC N terminal domain UNDKW_0883 PF01513 ATP-NAD kinase UNDKW_0885 PF01628 HrcA protein C terminal domain UNDKW_0886 PF00072 Response regulator receiver domain UNDKW_0886 PF00196 Bacterial regulatory proteins, luxR family UNDKW_0887 PF01475 Ferric uptake regulator family UNDKW_0888 PF04355 SmpA / OmlA family UNDKW_0889 PF05173 Dihydrodipicolinate reductase, C-terminus UNDKW_0889 PF01113 Dihydrodipicolinate reductase, N-terminus UNDKW_0890 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_0891 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_0892 PF08264 Anticodon-binding domain of tRNA UNDKW_0892 PF13603 Leucyl-tRNA synthetase, Domain 2 UNDKW_0892 PF09334 tRNA synthetases class I (M) UNDKW_0895 PF00171 Aldehyde dehydrogenase family UNDKW_0897 PF02926 THUMP domain UNDKW_0897 PF01170 Putative RNA methylase family UPF0020 UNDKW_0898 PF00171 Aldehyde dehydrogenase family UNDKW_0900 PF07690 Major Facilitator Superfamily UNDKW_0902 PF13609 Gram-negative porin UNDKW_0904 PF01636 Phosphotransferase enzyme family UNDKW_0906 PF02566 OsmC-like protein UNDKW_0907 PF00572 Ribosomal protein L13 UNDKW_0908 PF00380 Ribosomal protein S9/S16 UNDKW_0909 PF02774 Semialdehyde dehydrogenase, dimerisation domain UNDKW_0909 PF01118 Semialdehyde dehydrogenase, NAD binding domain UNDKW_0912 PF01521 Iron-sulphur cluster biosynthesis UNDKW_0914 PF01565 FAD binding domain UNDKW_0914 PF02913 FAD linked oxidases, C-terminal domain UNDKW_0915 PF01565 FAD binding domain UNDKW_0916 PF13183 4Fe-4S dicluster domain UNDKW_0916 PF02754 Cysteine-rich domain UNDKW_0918 PF01609 Transposase DDE domain UNDKW_0920 PF00255 Glutathione peroxidase UNDKW_0921 PF00437 Type II/IV secretion system protein UNDKW_0922 PF00437 Type II/IV secretion system protein UNDKW_0923 PF01168 Alanine racemase, N-terminal domain UNDKW_0924 PF14748 Pyrroline-5-carboxylate reductase dimerisation UNDKW_0924 PF03807 NADP oxidoreductase coenzyme F420-dependent UNDKW_0928 PF01040 UbiA prenyltransferase family UNDKW_0929 PF13416 Bacterial extracellular solute-binding protein UNDKW_0930 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0931 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_0932 PF00005 ABC transporter UNDKW_0932 PF17912 MalK OB fold domain UNDKW_0935 PF01734 Patatin-like phospholipase UNDKW_0936 PF13302 Acetyltransferase (GNAT) domain UNDKW_0937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_0937 PF03466 LysR substrate binding domain UNDKW_0939 PF00106 short chain dehydrogenase UNDKW_0940 PF01047 MarR family UNDKW_0940 PF00583 Acetyltransferase (GNAT) family UNDKW_0941 PF00270 DEAD/DEAH box helicase UNDKW_0941 PF17191 RecG wedge domain UNDKW_0941 PF00271 Helicase conserved C-terminal domain UNDKW_0942 PF02547 Queuosine biosynthesis protein UNDKW_0943 PF01702 Queuine tRNA-ribosyltransferase UNDKW_0946 PF02699 Preprotein translocase subunit UNDKW_0947 PF07549 SecD/SecF GG Motif UNDKW_0947 PF02355 Protein export membrane protein UNDKW_0947 PF13721 SecD export protein N-terminal TM region UNDKW_0948 PF07549 SecD/SecF GG Motif UNDKW_0948 PF02355 Protein export membrane protein UNDKW_0949 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_0950 PF00873 AcrB/AcrD/AcrF family UNDKW_0951 PF01047 MarR family UNDKW_0952 PF04264 YceI-like domain UNDKW_0954 PF01292 Prokaryotic cytochrome b561 UNDKW_0956 PF08328 Adenylosuccinate lyase C-terminal UNDKW_0956 PF00206 Lyase UNDKW_0958 PF00210 Ferritin-like domain UNDKW_0967 PF02666 Phosphatidylserine decarboxylase UNDKW_0968 PF11871 Domain of unknown function (DUF3391) UNDKW_0968 PF01966 HD domain UNDKW_0969 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0969 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_0969 PF00072 Response regulator receiver domain UNDKW_0969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0969 PF00672 HAMP domain UNDKW_0969 PF01627 Hpt domain UNDKW_0970 PF00578 AhpC/TSA family UNDKW_0971 PF02627 Carboxymuconolactone decarboxylase family UNDKW_0974 PF01112 Asparaginase UNDKW_0977 PF00293 NUDIX domain UNDKW_0978 PF05222 Alanine dehydrogenase/PNT, N-terminal domain UNDKW_0978 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UNDKW_0979 PF02261 Aspartate decarboxylase UNDKW_0980 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch UNDKW_0981 PF02233 NAD(P) transhydrogenase beta subunit UNDKW_0982 PF00873 AcrB/AcrD/AcrF family UNDKW_0983 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_0983 PF00529 HlyD membrane-fusion protein of T1SS UNDKW_0984 PF02321 Outer membrane efflux protein UNDKW_0985 PF00403 Heavy-metal-associated domain UNDKW_0986 PF13411 MerR HTH family regulatory protein UNDKW_0987 PF00491 Arginase family UNDKW_0988 PF02423 Ornithine cyclodeaminase/mu-crystallin family UNDKW_0989 PF01037 Lrp/AsnC ligand binding domain UNDKW_0990 PF00072 Response regulator receiver domain UNDKW_0990 PF00486 Transcriptional regulatory protein, C terminal UNDKW_0991 PF01966 HD domain UNDKW_0992 PF01810 LysE type translocator UNDKW_0995 PF00072 Response regulator receiver domain UNDKW_0996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_0996 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_0998 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UNDKW_0999 PF00510 Cytochrome c oxidase subunit III UNDKW_1000 PF00115 Cytochrome C and Quinol oxidase polypeptide I UNDKW_1001 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UNDKW_1001 PF06481 COX Aromatic Rich Motif UNDKW_1002 PF00083 Sugar (and other) transporter UNDKW_1002 PF07690 Major Facilitator Superfamily UNDKW_1003 PF01494 FAD binding domain UNDKW_1004 PF00557 Metallopeptidase family M24 UNDKW_1004 PF05195 Aminopeptidase P, N-terminal domain UNDKW_1005 PF00483 Nucleotidyl transferase UNDKW_1006 PF01636 Phosphotransferase enzyme family UNDKW_1007 PF04453 LPS transport system D UNDKW_1008 PF00639 PPIC-type PPIASE domain UNDKW_1008 PF09312 SurA N-terminal domain UNDKW_1009 PF04166 Pyridoxal phosphate biosynthetic protein PdxA UNDKW_1010 PF00398 Ribosomal RNA adenine dimethylase UNDKW_1011 PF00072 Response regulator receiver domain UNDKW_1012 PF00342 Phosphoglucose isomerase UNDKW_1013 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_1014 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain UNDKW_1014 PF00437 Type II/IV secretion system protein UNDKW_1015 PF02112 cAMP phosphodiesterases class-II UNDKW_1016 PF01966 HD domain UNDKW_1017 PF00211 Adenylate and Guanylate cyclase catalytic domain UNDKW_1018 PF03594 Benzoate membrane transport protein UNDKW_1019 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1019 PF00155 Aminotransferase class I and II UNDKW_1021 PF03466 LysR substrate binding domain UNDKW_1021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1026 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) UNDKW_1027 PF01527 Transposase UNDKW_1028 PF13276 HTH-like domain UNDKW_1028 PF13333 Integrase core domain UNDKW_1028 PF00665 Integrase core domain UNDKW_1031 PF01494 FAD binding domain UNDKW_1032 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_1033 PF00571 CBS domain UNDKW_1033 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_1035 PF00232 Glycosyl hydrolase family 1 UNDKW_1038 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1038 PF00593 TonB dependent receptor UNDKW_1039 PF04820 Tryptophan halogenase UNDKW_1040 PF00356 Bacterial regulatory proteins, lacI family UNDKW_1041 PF00440 Bacterial regulatory proteins, tetR family UNDKW_1041 PF17922 Tetracyclin repressor-like, C-terminal domain UNDKW_1042 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_1043 PF00873 AcrB/AcrD/AcrF family UNDKW_1046 PF02321 Outer membrane efflux protein UNDKW_1047 PF13533 Biotin-lipoyl like UNDKW_1048 PF02687 FtsX-like permease family UNDKW_1048 PF12704 MacB-like periplasmic core domain UNDKW_1050 PF00005 ABC transporter UNDKW_1053 PF00593 TonB dependent receptor UNDKW_1053 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1057 PF04820 Tryptophan halogenase UNDKW_1060 PF00128 Alpha amylase, catalytic domain UNDKW_1061 PF13802 Galactose mutarotase-like UNDKW_1061 PF17137 Domain of unknown function (DUF5110) UNDKW_1061 PF16338 Domain of unknown function (DUF4968) UNDKW_1061 PF01055 Glycosyl hydrolases family 31 UNDKW_1062 PF13802 Galactose mutarotase-like UNDKW_1062 PF17137 Domain of unknown function (DUF5110) UNDKW_1062 PF16338 Domain of unknown function (DUF4968) UNDKW_1062 PF01055 Glycosyl hydrolases family 31 UNDKW_1064 PF02685 Glucokinase UNDKW_1064 PF01418 Helix-turn-helix domain, rpiR family UNDKW_1064 PF01380 SIS domain UNDKW_1070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1070 PF03466 LysR substrate binding domain UNDKW_1072 PF01063 Amino-transferase class IV UNDKW_1073 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_1074 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1075 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1076 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_1078 PF17967 Pullulanase N2 domain UNDKW_1078 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) UNDKW_1078 PF11852 Domain of unknown function (DUF3372) UNDKW_1078 PF18494 Pullulanase Ins domain UNDKW_1078 PF03714 Bacterial pullanase-associated domain UNDKW_1079 PF01380 SIS domain UNDKW_1079 PF01418 Helix-turn-helix domain, rpiR family UNDKW_1079 PF02685 Glucokinase UNDKW_1080 PF00128 Alpha amylase, catalytic domain UNDKW_1081 PF01965 DJ-1/PfpI family UNDKW_1082 PF01266 FAD dependent oxidoreductase UNDKW_1085 PF01022 Bacterial regulatory protein, arsR family UNDKW_1089 PF03062 MBOAT, membrane-bound O-acyltransferase family UNDKW_1092 PF04972 BON domain UNDKW_1094 PF01594 AI-2E family transporter UNDKW_1098 PF07730 Histidine kinase UNDKW_1098 PF17200 Single Cache domain 2 UNDKW_1099 PF00072 Response regulator receiver domain UNDKW_1099 PF01339 CheB methylesterase UNDKW_1100 PF00072 Response regulator receiver domain UNDKW_1100 PF00196 Bacterial regulatory proteins, luxR family UNDKW_1107 PF04011 LemA family UNDKW_1108 PF04536 TPM domain UNDKW_1110 PF13419 Haloacid dehalogenase-like hydrolase UNDKW_1115 PF00012 Hsp70 protein UNDKW_1119 PF07690 Major Facilitator Superfamily UNDKW_1120 PF01119 DNA mismatch repair protein, C-terminal domain UNDKW_1120 PF08676 MutL C terminal dimerisation domain UNDKW_1121 PF09335 SNARE associated Golgi protein UNDKW_1123 PF01810 LysE type translocator UNDKW_1124 PF00155 Aminotransferase class I and II UNDKW_1126 PF11741 AMIN domain UNDKW_1126 PF01520 N-acetylmuramoyl-L-alanine amidase UNDKW_1127 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE UNDKW_1128 PF08331 Domain of unknown function (DUF1730) UNDKW_1131 PF00196 Bacterial regulatory proteins, luxR family UNDKW_1131 PF00072 Response regulator receiver domain UNDKW_1132 PF00989 PAS fold UNDKW_1132 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1133 PF03480 Bacterial extracellular solute-binding protein, family 7 UNDKW_1134 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component UNDKW_1135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component UNDKW_1137 PF02899 Phage integrase, N-terminal SAM-like domain UNDKW_1137 PF00589 Phage integrase family UNDKW_1139 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1139 PF00593 TonB dependent receptor UNDKW_1142 PF00326 Prolyl oligopeptidase family UNDKW_1143 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1143 PF00593 TonB dependent receptor UNDKW_1145 PF02660 Glycerol-3-phosphate acyltransferase UNDKW_1147 PF00814 Glycoprotease family UNDKW_1148 PF03861 ANTAR domain UNDKW_1148 PF00072 Response regulator receiver domain UNDKW_1150 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1151 PF00005 ABC transporter UNDKW_1152 PF00563 EAL domain UNDKW_1152 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1152 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1153 PF08298 PrkA AAA domain UNDKW_1153 PF06798 PrkA serine protein kinase C-terminal domain UNDKW_1154 PF04285 Protein of unknown function (DUF444) UNDKW_1155 PF04293 SpoVR like protein UNDKW_1157 PF01914 MarC family integral membrane protein UNDKW_1159 PF00583 Acetyltransferase (GNAT) family UNDKW_1163 PF13520 Amino acid permease UNDKW_1164 PF05981 CreA protein UNDKW_1169 PF00005 ABC transporter UNDKW_1172 PF01510 N-acetylmuramoyl-L-alanine amidase UNDKW_1178 PF00144 Beta-lactamase UNDKW_1179 PF03466 LysR substrate binding domain UNDKW_1179 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1180 PF13580 SIS domain UNDKW_1183 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1183 PF00593 TonB dependent receptor UNDKW_1184 PF02638 Glycosyl hydrolase-like 10 UNDKW_1194 PF05746 DALR anticodon binding domain UNDKW_1194 PF02092 Glycyl-tRNA synthetase beta subunit UNDKW_1195 PF02091 Glycyl-tRNA synthetase alpha subunit UNDKW_1196 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1196 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1196 PF00563 EAL domain UNDKW_1200 PF03466 LysR substrate binding domain UNDKW_1200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1203 PF07676 WD40-like Beta Propeller Repeat UNDKW_1203 PF00326 Prolyl oligopeptidase family UNDKW_1213 PF18029 Glyoxalase-like domain UNDKW_1213 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_1218 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1218 PF08447 PAS fold UNDKW_1218 PF08448 PAS fold UNDKW_1218 PF00563 EAL domain UNDKW_1220 PF05163 DinB family UNDKW_1221 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UNDKW_1221 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UNDKW_1223 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_1224 PF00873 AcrB/AcrD/AcrF family UNDKW_1225 PF00854 POT family UNDKW_1226 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase UNDKW_1227 PF17151 Periplasmic sensor domain UNDKW_1227 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1230 PF01544 CorA-like Mg2+ transporter protein UNDKW_1231 PF12833 Helix-turn-helix domain UNDKW_1237 PF02463 RecF/RecN/SMC N terminal domain UNDKW_1241 PF01625 Peptide methionine sulfoxide reductase UNDKW_1245 PF04101 Glycosyltransferase family 28 C-terminal domain UNDKW_1245 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase UNDKW_1246 PF01243 Pyridoxamine 5'-phosphate oxidase UNDKW_1246 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region UNDKW_1247 PF01814 Hemerythrin HHE cation binding domain UNDKW_1248 PF04072 Leucine carboxyl methyltransferase UNDKW_1251 PF00899 ThiF family UNDKW_1252 PF00672 HAMP domain UNDKW_1252 PF02203 Tar ligand binding domain homologue UNDKW_1252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_1253 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_1253 PF02203 Tar ligand binding domain homologue UNDKW_1253 PF00672 HAMP domain UNDKW_1254 PF03544 Gram-negative bacterial TonB protein C-terminal UNDKW_1256 PF00149 Calcineurin-like phosphoesterase UNDKW_1258 PF00376 MerR family regulatory protein UNDKW_1258 PF09278 MerR, DNA binding UNDKW_1259 PF11849 Domain of unknown function (DUF3369) UNDKW_1260 PF08362 YcdC-like protein, C-terminal region UNDKW_1260 PF00440 Bacterial regulatory proteins, tetR family UNDKW_1261 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1261 PF00155 Aminotransferase class I and II UNDKW_1262 PF00202 Aminotransferase class-III UNDKW_1263 PF00171 Aldehyde dehydrogenase family UNDKW_1264 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UNDKW_1264 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_1265 PF01180 Dihydroorotate dehydrogenase UNDKW_1266 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin UNDKW_1267 PF01979 Amidohydrolase family UNDKW_1268 PF01979 Amidohydrolase family UNDKW_1269 PF01546 Peptidase family M20/M25/M40 UNDKW_1269 PF07687 Peptidase dimerisation domain UNDKW_1277 PF01966 HD domain UNDKW_1278 PF02525 Flavodoxin-like fold UNDKW_1279 PF13411 MerR HTH family regulatory protein UNDKW_1280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1280 PF13426 PAS domain UNDKW_1280 PF00672 HAMP domain UNDKW_1280 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1281 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1281 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1281 PF00563 EAL domain UNDKW_1282 PF03793 PASTA domain UNDKW_1282 PF00069 Protein kinase domain UNDKW_1283 PF07690 Major Facilitator Superfamily UNDKW_1284 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_1284 PF18267 Rubredoxin NAD+ reductase C-terminal domain UNDKW_1284 PF04324 BFD-like [2Fe-2S] binding domain UNDKW_1284 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UNDKW_1284 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UNDKW_1285 PF00355 Rieske [2Fe-2S] domain UNDKW_1286 PF00384 Molybdopterin oxidoreductase UNDKW_1286 PF01568 Molydopterin dinucleotide binding domain UNDKW_1286 PF04324 BFD-like [2Fe-2S] binding domain UNDKW_1286 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UNDKW_1293 PF00211 Adenylate and Guanylate cyclase catalytic domain UNDKW_1298 PF01431 Peptidase family M13 UNDKW_1298 PF05649 Peptidase family M13 UNDKW_1303 PF00155 Aminotransferase class I and II UNDKW_1303 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1304 PF08502 LeuA allosteric (dimerisation) domain UNDKW_1304 PF00682 HMGL-like UNDKW_1306 PF01790 Prolipoprotein diacylglyceryl transferase UNDKW_1307 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1307 PF03466 LysR substrate binding domain UNDKW_1309 PF00034 Cytochrome c UNDKW_1310 PF13458 Periplasmic binding protein UNDKW_1311 PF01037 Lrp/AsnC ligand binding domain UNDKW_1311 PF13404 AsnC-type helix-turn-helix domain UNDKW_1312 PF01266 FAD dependent oxidoreductase UNDKW_1316 PF01432 Peptidase family M3 UNDKW_1317 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UNDKW_1317 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UNDKW_1318 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1318 PF00593 TonB dependent receptor UNDKW_1319 PF17831 Pyruvate dehydrogenase E1 component middle domain UNDKW_1319 PF00456 Transketolase, thiamine diphosphate binding domain UNDKW_1320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UNDKW_1320 PF00364 Biotin-requiring enzyme UNDKW_1320 PF02817 e3 binding domain UNDKW_1321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UNDKW_1321 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_1322 PF05193 Peptidase M16 inactive domain UNDKW_1322 PF00675 Insulinase (Peptidase family M16) UNDKW_1324 PF01966 HD domain UNDKW_1324 PF00072 Response regulator receiver domain UNDKW_1326 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1331 PF00005 ABC transporter UNDKW_1336 PF06736 Protein of unknown function (DUF1211) UNDKW_1340 PF07676 WD40-like Beta Propeller Repeat UNDKW_1340 PF14684 Tricorn protease C1 domain UNDKW_1340 PF14685 Tricorn protease PDZ domain UNDKW_1340 PF03572 Peptidase family S41 UNDKW_1342 PF00942 Cellulose binding domain UNDKW_1342 PF12891 Glycoside hydrolase family 44 UNDKW_1343 PF16884 N-terminal domain of oxidoreductase UNDKW_1343 PF00107 Zinc-binding dehydrogenase UNDKW_1344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1344 PF03466 LysR substrate binding domain UNDKW_1346 PF00202 Aminotransferase class-III UNDKW_1347 PF00175 Oxidoreductase NAD-binding domain UNDKW_1347 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_1347 PF00970 Oxidoreductase FAD-binding domain UNDKW_1349 PF00672 HAMP domain UNDKW_1349 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1349 PF13426 PAS domain UNDKW_1350 PF00437 Type II/IV secretion system protein UNDKW_1350 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain UNDKW_1351 PF17284 Spermidine synthase tetramerisation domain UNDKW_1355 PF00183 Hsp90 protein UNDKW_1355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1361 PF01406 tRNA synthetases class I (C) catalytic domain UNDKW_1362 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1363 PF01810 LysE type translocator UNDKW_1364 PF00155 Aminotransferase class I and II UNDKW_1365 PF01810 LysE type translocator UNDKW_1366 PF00892 EamA-like transporter family UNDKW_1368 PF00155 Aminotransferase class I and II UNDKW_1371 PF00072 Response regulator receiver domain UNDKW_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1371 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1371 PF08448 PAS fold UNDKW_1371 PF13188 PAS domain UNDKW_1372 PF01479 S4 domain UNDKW_1372 PF00849 RNA pseudouridylate synthase UNDKW_1373 PF00376 MerR family regulatory protein UNDKW_1373 PF13614 AAA domain UNDKW_1375 PF01757 Acyltransferase family UNDKW_1378 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1378 PF00672 HAMP domain UNDKW_1379 PF00486 Transcriptional regulatory protein, C terminal UNDKW_1379 PF00072 Response regulator receiver domain UNDKW_1380 PF02464 Competence-damaged protein UNDKW_1383 PF01548 Transposase UNDKW_1383 PF02371 Transposase IS116/IS110/IS902 family UNDKW_1389 PF05567 Neisseria PilC beta-propeller domain UNDKW_1390 PF00114 Pilin (bacterial filament) UNDKW_1390 PF07963 Prokaryotic N-terminal methylation motif UNDKW_1391 PF03477 ATP cone domain UNDKW_1392 PF00464 Serine hydroxymethyltransferase UNDKW_1393 PF00106 short chain dehydrogenase UNDKW_1394 PF03061 Thioesterase superfamily UNDKW_1395 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_1396 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1397 PF01103 Surface antigen UNDKW_1397 PF07244 Surface antigen variable number repeat UNDKW_1398 PF04357 TamB, inner membrane protein subunit of TAM complex UNDKW_1399 PF00675 Insulinase (Peptidase family M16) UNDKW_1399 PF05193 Peptidase M16 inactive domain UNDKW_1404 PF03109 ABC1 family UNDKW_1405 PF00440 Bacterial regulatory proteins, tetR family UNDKW_1405 PF17934 Tetracyclin repressor-like, C-terminal domain UNDKW_1407 PF08774 VRR-NUC domain UNDKW_1407 PF18081 Fanconi anemia-associated nuclease SAP domain UNDKW_1409 PF02384 N-6 DNA Methylase UNDKW_1412 PF04471 Restriction endonuclease UNDKW_1412 PF14338 Mrr N-terminal domain UNDKW_1413 PF01554 MatE UNDKW_1415 PF01197 Ribosomal protein L31 UNDKW_1417 PF03458 UPF0126 domain UNDKW_1418 PF08361 MAATS-type transcriptional repressor, C-terminal region UNDKW_1418 PF00440 Bacterial regulatory proteins, tetR family UNDKW_1420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_1421 PF00873 AcrB/AcrD/AcrF family UNDKW_1422 PF02321 Outer membrane efflux protein UNDKW_1426 PF07732 Multicopper oxidase UNDKW_1427 PF02082 Transcriptional regulator UNDKW_1428 PF00115 Cytochrome C and Quinol oxidase polypeptide I UNDKW_1431 PF07497 Rho termination factor, RNA-binding domain UNDKW_1431 PF07498 Rho termination factor, N-terminal domain UNDKW_1431 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UNDKW_1432 PF00085 Thioredoxin UNDKW_1434 PF13361 UvrD-like helicase C-terminal domain UNDKW_1434 PF00580 UvrD/REP helicase N-terminal domain UNDKW_1434 PF12705 PD-(D/E)XK nuclease superfamily UNDKW_1436 PF05164 Cell division protein ZapA UNDKW_1438 PF02885 Glycosyl transferase family, helical bundle domain UNDKW_1441 PF12697 Alpha/beta hydrolase family UNDKW_1442 PF00563 EAL domain UNDKW_1442 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1442 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1443 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1443 PF00593 TonB dependent receptor UNDKW_1445 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1445 PF00563 EAL domain UNDKW_1445 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1445 PF13188 PAS domain UNDKW_1447 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_1447 PF02203 Tar ligand binding domain homologue UNDKW_1447 PF00672 HAMP domain UNDKW_1448 PF12849 PBP superfamily domain UNDKW_1451 PF00440 Bacterial regulatory proteins, tetR family UNDKW_1451 PF08359 YsiA-like protein, C-terminal region UNDKW_1453 PF01165 Ribosomal protein S21 UNDKW_1455 PF08275 DNA primase catalytic core, N-terminal domain UNDKW_1455 PF10410 DnaB-helicase binding domain of primase UNDKW_1455 PF08278 DNA primase DnaG DnaB-binding UNDKW_1455 PF01807 CHC2 zinc finger UNDKW_1456 PF04539 Sigma-70 region 3 UNDKW_1456 PF04546 Sigma-70, non-essential region UNDKW_1456 PF04545 Sigma-70, region 4 UNDKW_1456 PF03979 Sigma-70 factor, region 1.1 UNDKW_1456 PF04542 Sigma-70 region 2 UNDKW_1456 PF00140 Sigma-70 factor, region 1.2 UNDKW_1457 PF00270 DEAD/DEAH box helicase UNDKW_1457 PF00271 Helicase conserved C-terminal domain UNDKW_1458 PF02423 Ornithine cyclodeaminase/mu-crystallin family UNDKW_1460 PF03466 LysR substrate binding domain UNDKW_1460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1464 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_1464 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_1464 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_1465 PF13193 AMP-binding enzyme C-terminal domain UNDKW_1465 PF00501 AMP-binding enzyme UNDKW_1467 PF01370 NAD dependent epimerase/dehydratase family UNDKW_1467 PF08338 Domain of unknown function (DUF1731) UNDKW_1470 PF00072 Response regulator receiver domain UNDKW_1470 PF00486 Transcriptional regulatory protein, C terminal UNDKW_1471 PF08521 Two-component sensor kinase N-terminal UNDKW_1471 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1472 PF00691 OmpA family UNDKW_1473 PF00768 D-alanyl-D-alanine carboxypeptidase UNDKW_1475 PF01638 HxlR-like helix-turn-helix UNDKW_1477 PF05368 NmrA-like family UNDKW_1479 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit UNDKW_1482 PF00072 Response regulator receiver domain UNDKW_1482 PF00196 Bacterial regulatory proteins, luxR family UNDKW_1483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1483 PF07730 Histidine kinase UNDKW_1484 PF13382 Adenine deaminase C-terminal domain UNDKW_1484 PF01979 Amidohydrolase family UNDKW_1485 PF01343 Peptidase family S49 UNDKW_1488 PF03144 Elongation factor Tu domain 2 UNDKW_1488 PF00009 Elongation factor Tu GTP binding domain UNDKW_1488 PF16658 Class II release factor RF3, C-terminal domain UNDKW_1491 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1495 PF04820 Tryptophan halogenase UNDKW_1498 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_1499 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1501 PF01869 BadF/BadG/BcrA/BcrD ATPase family UNDKW_1502 PF07702 UTRA domain UNDKW_1502 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1503 PF01979 Amidohydrolase family UNDKW_1504 PF01979 Amidohydrolase family UNDKW_1505 PF01380 SIS domain UNDKW_1506 PF01547 Bacterial extracellular solute-binding protein UNDKW_1507 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1508 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1510 PF01915 Glycosyl hydrolase family 3 C-terminal domain UNDKW_1510 PF00933 Glycosyl hydrolase family 3 N terminal domain UNDKW_1511 PF00005 ABC transporter UNDKW_1511 PF08402 TOBE domain UNDKW_1515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1515 PF03466 LysR substrate binding domain UNDKW_1516 PF00107 Zinc-binding dehydrogenase UNDKW_1516 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_1520 PF00072 Response regulator receiver domain UNDKW_1520 PF04397 LytTr DNA-binding domain UNDKW_1521 PF07694 5TMR of 5TMR-LYT UNDKW_1521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1521 PF06580 Histidine kinase UNDKW_1529 PF02333 Phytase UNDKW_1531 PF05230 MASE2 domain UNDKW_1531 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1534 PF00326 Prolyl oligopeptidase family UNDKW_1534 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region UNDKW_1535 PF12833 Helix-turn-helix domain UNDKW_1536 PF01177 Asp/Glu/Hydantoin racemase UNDKW_1538 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1539 PF00005 ABC transporter UNDKW_1541 PF00892 EamA-like transporter family UNDKW_1542 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UNDKW_1542 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UNDKW_1543 PF13742 OB-fold nucleic acid binding domain UNDKW_1543 PF02601 Exonuclease VII, large subunit UNDKW_1544 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_1545 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1546 PF02606 Tetraacyldisaccharide-1-P 4'-kinase UNDKW_1547 PF03966 Trm112p-like protein UNDKW_1548 PF02348 Cytidylyltransferase UNDKW_1549 PF05191 Adenylate kinase, active site lid UNDKW_1550 PF03030 Inorganic H+ pyrophosphatase UNDKW_1551 PF00106 short chain dehydrogenase UNDKW_1553 PF00545 ribonuclease UNDKW_1555 PF00551 Formyl transferase UNDKW_1556 PF01029 NusB family UNDKW_1556 PF01189 16S rRNA methyltransferase RsmB/F UNDKW_1557 PF12794 Mechanosensitive ion channel inner membrane domain 1 UNDKW_1557 PF00924 Mechanosensitive ion channel UNDKW_1557 PF12795 Mechanosensitive ion channel porin domain UNDKW_1559 PF00486 Transcriptional regulatory protein, C terminal UNDKW_1559 PF00072 Response regulator receiver domain UNDKW_1561 PF00072 Response regulator receiver domain UNDKW_1562 PF00672 HAMP domain UNDKW_1562 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_1562 PF00072 Response regulator receiver domain UNDKW_1562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1562 PF01627 Hpt domain UNDKW_1562 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1563 PF00471 Ribosomal protein L33 UNDKW_1564 PF00830 Ribosomal L28 family UNDKW_1565 PF04002 RadC-like JAB domain UNDKW_1567 PF02401 LytB protein UNDKW_1568 PF02653 Branched-chain amino acid transport system / permease component UNDKW_1569 PF02653 Branched-chain amino acid transport system / permease component UNDKW_1569 PF11862 Domain of unknown function (DUF3382) UNDKW_1570 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_1570 PF00005 ABC transporter UNDKW_1571 PF00005 ABC transporter UNDKW_1573 PF07690 Major Facilitator Superfamily UNDKW_1574 PF09361 Phasin protein UNDKW_1576 PF00881 Nitroreductase family UNDKW_1577 PF00768 D-alanyl-D-alanine carboxypeptidase UNDKW_1583 PF02368 Bacterial Ig-like domain (group 2) UNDKW_1583 PF11999 Protein of unknown function (DUF3494) UNDKW_1584 PF00691 OmpA family UNDKW_1586 PF03710 Glutamate-ammonia ligase adenylyltransferase UNDKW_1586 PF08335 GlnD PII-uridylyltransferase UNDKW_1588 PF00795 Carbon-nitrogen hydrolase UNDKW_1589 PF01523 Putative modulator of DNA gyrase UNDKW_1590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UNDKW_1593 PF10609 NUBPL iron-transfer P-loop NTPase UNDKW_1594 PF00535 Glycosyl transferase family 2 UNDKW_1594 PF07238 PilZ domain UNDKW_1594 PF03552 Cellulose synthase UNDKW_1595 PF03170 Bacterial cellulose synthase subunit UNDKW_1595 PF00535 Glycosyl transferase family 2 UNDKW_1595 PF07238 PilZ domain UNDKW_1596 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) UNDKW_1597 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) UNDKW_1599 PF00793 DAHP synthetase I family UNDKW_1602 PF04461 Protein of unknown function (DUF520) UNDKW_1603 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain UNDKW_1603 PF01565 FAD binding domain UNDKW_1605 PF01435 Peptidase family M48 UNDKW_1606 PF05987 Bacterial protein of unknown function (DUF898) UNDKW_1608 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_1608 PF00107 Zinc-binding dehydrogenase UNDKW_1609 PF03466 LysR substrate binding domain UNDKW_1609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1612 PF00282 Pyridoxal-dependent decarboxylase conserved domain UNDKW_1617 PF00106 short chain dehydrogenase UNDKW_1621 PF00589 Phage integrase family UNDKW_1632 PF00145 C-5 cytosine-specific DNA methylase UNDKW_1649 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1649 PF03466 LysR substrate binding domain UNDKW_1662 PF01584 CheW-like domain UNDKW_1663 PF02203 Tar ligand binding domain homologue UNDKW_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_1663 PF00672 HAMP domain UNDKW_1671 PF13458 Periplasmic binding protein UNDKW_1672 PF02163 Peptidase family M50 UNDKW_1675 PF00080 Copper/zinc superoxide dismutase (SODC) UNDKW_1677 PF00753 Metallo-beta-lactamase superfamily UNDKW_1680 PF00144 Beta-lactamase UNDKW_1683 PF03301 Tryptophan 2,3-dioxygenase UNDKW_1684 PF00266 Aminotransferase class-V UNDKW_1685 PF01037 Lrp/AsnC ligand binding domain UNDKW_1688 PF00482 Type II secretion system (T2SS), protein F UNDKW_1691 PF00144 Beta-lactamase UNDKW_1692 PF03023 Lipid II flippase MurJ UNDKW_1694 PF13229 Right handed beta helix region UNDKW_1696 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) UNDKW_1697 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) UNDKW_1698 PF08486 Stage II sporulation protein UNDKW_1698 PF10062 Predicted secreted protein (DUF2300) UNDKW_1699 PF07703 Alpha-2-macroglobulin bait region domain UNDKW_1699 PF01835 MG2 domain UNDKW_1699 PF00207 Alpha-2-macroglobulin family UNDKW_1700 PF06672 Protein of unknown function (DUF1175) UNDKW_1701 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) UNDKW_1703 PF08279 HTH domain UNDKW_1703 PF13280 WYL domain UNDKW_1704 PF00034 Cytochrome c UNDKW_1705 PF01183 Glycosyl hydrolases family 25 UNDKW_1709 PF03466 LysR substrate binding domain UNDKW_1709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1710 PF00462 Glutaredoxin UNDKW_1711 PF06865 Pyrimidine/purine nucleoside phosphorylase UNDKW_1712 PF00764 Arginosuccinate synthase UNDKW_1713 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UNDKW_1713 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UNDKW_1716 PF03062 MBOAT, membrane-bound O-acyltransferase family UNDKW_1717 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX UNDKW_1719 PF02146 Sir2 family UNDKW_1721 PF03193 RsgA GTPase UNDKW_1722 PF01329 Pterin 4 alpha carbinolamine dehydratase UNDKW_1723 PF16491 CAAX prenyl protease N-terminal, five membrane helices UNDKW_1723 PF01435 Peptidase family M48 UNDKW_1724 PF00929 Exonuclease UNDKW_1725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_1726 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UNDKW_1731 PF18146 Damage-inducible protein CinA KH domain UNDKW_1731 PF02464 Competence-damaged protein UNDKW_1731 PF00994 Probable molybdopterin binding domain UNDKW_1737 PF02311 AraC-like ligand binding domain UNDKW_1737 PF12833 Helix-turn-helix domain UNDKW_1740 PF00486 Transcriptional regulatory protein, C terminal UNDKW_1740 PF00072 Response regulator receiver domain UNDKW_1741 PF13756 Stimulus-sensing domain UNDKW_1741 PF13755 Sensor N-terminal transmembrane domain UNDKW_1741 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1741 PF00672 HAMP domain UNDKW_1746 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1753 PF07702 UTRA domain UNDKW_1753 PF00392 Bacterial regulatory proteins, gntR family UNDKW_1754 PF03466 LysR substrate binding domain UNDKW_1754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_1757 PF13380 CoA binding domain UNDKW_1757 PF13607 Succinyl-CoA ligase like flavodoxin domain UNDKW_1757 PF00583 Acetyltransferase (GNAT) family UNDKW_1759 PF17391 Urocanase N-terminal domain UNDKW_1759 PF17392 Urocanase C-terminal domain UNDKW_1759 PF01175 Urocanase Rossmann-like domain UNDKW_1760 PF00221 Aromatic amino acid lyase UNDKW_1762 PF01979 Amidohydrolase family UNDKW_1765 PF00486 Transcriptional regulatory protein, C terminal UNDKW_1765 PF00072 Response regulator receiver domain UNDKW_1766 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1766 PF00072 Response regulator receiver domain UNDKW_1766 PF00563 EAL domain UNDKW_1768 PF12146 Serine aminopeptidase, S33 UNDKW_1768 PF12147 Putative methyltransferase UNDKW_1769 PF01066 CDP-alcohol phosphatidyltransferase UNDKW_1772 PF00106 short chain dehydrogenase UNDKW_1773 PF00521 DNA gyrase/topoisomerase IV, subunit A UNDKW_1774 PF00204 DNA gyrase B UNDKW_1774 PF01751 Toprim domain UNDKW_1774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1774 PF00986 DNA gyrase B subunit, carboxyl terminus UNDKW_1775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1775 PF01751 Toprim domain UNDKW_1775 PF00204 DNA gyrase B UNDKW_1775 PF00986 DNA gyrase B subunit, carboxyl terminus UNDKW_1779 PF01649 Ribosomal protein S20 UNDKW_1781 PF00849 RNA pseudouridylate synthase UNDKW_1782 PF00180 Isocitrate/isopropylmalate dehydrogenase UNDKW_1785 PF00072 Response regulator receiver domain UNDKW_1785 PF00196 Bacterial regulatory proteins, luxR family UNDKW_1786 PF00072 Response regulator receiver domain UNDKW_1786 PF00196 Bacterial regulatory proteins, luxR family UNDKW_1787 PF07730 Histidine kinase UNDKW_1787 PF17200 Single Cache domain 2 UNDKW_1788 PF07730 Histidine kinase UNDKW_1788 PF17200 Single Cache domain 2 UNDKW_1789 PF00313 'Cold-shock' DNA-binding domain UNDKW_1790 PF02617 ATP-dependent Clp protease adaptor protein ClpS UNDKW_1791 PF17871 AAA lid domain UNDKW_1791 PF07724 AAA domain (Cdc48 subfamily) UNDKW_1791 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_1791 PF02861 Clp amino terminal domain, pathogenicity island component UNDKW_1791 PF10431 C-terminal, D2-small domain, of ClpB protein UNDKW_1794 PF02678 Pirin UNDKW_1794 PF05726 Pirin C-terminal cupin domain UNDKW_1796 PF00692 dUTPase UNDKW_1797 PF04127 DNA / pantothenate metabolism flavoprotein UNDKW_1797 PF02441 Flavoprotein UNDKW_1798 PF01252 Signal peptidase (SPase) II UNDKW_1799 PF06827 Zinc finger found in FPG and IleRS UNDKW_1799 PF08264 Anticodon-binding domain of tRNA UNDKW_1799 PF00133 tRNA synthetases class I (I, L, M and V) UNDKW_1800 PF01687 Riboflavin kinase UNDKW_1800 PF06574 FAD synthetase UNDKW_1802 PF05175 Methyltransferase small domain UNDKW_1802 PF08468 Methyltransferase small domain N-terminal UNDKW_1809 PF02272 DHHA1 domain UNDKW_1809 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UNDKW_1809 PF01411 tRNA synthetases class II (A) UNDKW_1811 PF04452 RNA methyltransferase UNDKW_1813 PF03738 Glutathionylspermidine synthase preATP-grasp UNDKW_1815 PF17284 Spermidine synthase tetramerisation domain UNDKW_1816 PF00176 SNF2 family N-terminal domain UNDKW_1816 PF00271 Helicase conserved C-terminal domain UNDKW_1816 PF12419 SNF2 Helicase protein UNDKW_1818 PF02779 Transketolase, pyrimidine binding domain UNDKW_1818 PF02780 Transketolase, C-terminal domain UNDKW_1818 PF00456 Transketolase, thiamine diphosphate binding domain UNDKW_1820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UNDKW_1820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UNDKW_1821 PF10502 Signal peptidase, peptidase S26 UNDKW_1824 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UNDKW_1824 PF00413 Matrixin UNDKW_1824 PF08548 Peptidase M10 serralysin C terminal UNDKW_1826 PF01219 Prokaryotic diacylglycerol kinase UNDKW_1827 PF02277 Phosphoribosyltransferase UNDKW_1828 PF02654 Cobalamin-5-phosphate synthase UNDKW_1831 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1831 PF00593 TonB dependent receptor UNDKW_1832 PF01032 FecCD transport family UNDKW_1833 PF00005 ABC transporter UNDKW_1834 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP UNDKW_1834 PF12557 Cob(I)alamin adenosyltransferase N terminal UNDKW_1835 PF07685 CobB/CobQ-like glutamine amidotransferase domain UNDKW_1835 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UNDKW_1836 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase UNDKW_1837 PF03186 CobD/Cbib protein UNDKW_1837 PF17113 Regulatory signalling modulator protein AmpE UNDKW_1838 PF00155 Aminotransferase class I and II UNDKW_1839 PF01497 Periplasmic binding protein UNDKW_1840 PF01497 Periplasmic binding protein UNDKW_1841 PF07685 CobB/CobQ-like glutamine amidotransferase domain UNDKW_1841 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UNDKW_1845 PF07715 TonB-dependent Receptor Plug Domain UNDKW_1845 PF00593 TonB dependent receptor UNDKW_1849 PF00302 Chloramphenicol acetyltransferase UNDKW_1850 PF00923 Transaldolase/Fructose-6-phosphate aldolase UNDKW_1851 PF00586 AIR synthase related protein, N-terminal domain UNDKW_1851 PF02769 AIR synthase related protein, C-terminal domain UNDKW_1852 PF00271 Helicase conserved C-terminal domain UNDKW_1852 PF00270 DEAD/DEAH box helicase UNDKW_1853 PF01270 Glycosyl hydrolases family 8 UNDKW_1857 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UNDKW_1857 PF00005 ABC transporter UNDKW_1858 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1859 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_1860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_1861 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_1861 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_1864 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_1865 PF02472 Biopolymer transport protein ExbD/TolR UNDKW_1868 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1873 PF07670 Nucleoside recognition UNDKW_1875 PF01979 Amidohydrolase family UNDKW_1876 PF01557 Fumarylacetoacetate (FAA) hydrolase family UNDKW_1877 PF14497 Glutathione S-transferase, C-terminal domain UNDKW_1877 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_1878 PF11849 Domain of unknown function (DUF3369) UNDKW_1879 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1879 PF00989 PAS fold UNDKW_1879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1884 PF12833 Helix-turn-helix domain UNDKW_1887 PF02254 TrkA-N domain UNDKW_1887 PF00999 Sodium/hydrogen exchanger family UNDKW_1895 PF00581 Rhodanese-like domain UNDKW_1896 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1896 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1896 PF00563 EAL domain UNDKW_1897 PF03951 Glutamine synthetase, beta-Grasp domain UNDKW_1897 PF00120 Glutamine synthetase, catalytic domain UNDKW_1899 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1899 PF00989 PAS fold UNDKW_1899 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1900 PF00158 Sigma-54 interaction domain UNDKW_1900 PF02954 Bacterial regulatory protein, Fis family UNDKW_1900 PF00072 Response regulator receiver domain UNDKW_1901 PF04608 Phosphatidylglycerophosphatase A UNDKW_1902 PF00586 AIR synthase related protein, N-terminal domain UNDKW_1902 PF02769 AIR synthase related protein, C-terminal domain UNDKW_1903 PF18113 Rubredoxin binding C-terminal domain UNDKW_1903 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_1904 PF00301 Rubredoxin UNDKW_1906 PF01515 Phosphate acetyl/butaryl transferase UNDKW_1906 PF00390 Malic enzyme, N-terminal domain UNDKW_1906 PF03949 Malic enzyme, NAD binding domain UNDKW_1908 PF13532 2OG-Fe(II) oxygenase superfamily UNDKW_1910 PF08223 PaaX-like protein C-terminal domain UNDKW_1910 PF07848 PaaX-like protein UNDKW_1911 PF05138 Phenylacetic acid catabolic protein UNDKW_1912 PF06243 Phenylacetic acid degradation B UNDKW_1913 PF05138 Phenylacetic acid catabolic protein UNDKW_1914 PF01883 Iron-sulfur cluster assembly protein UNDKW_1915 PF00175 Oxidoreductase NAD-binding domain UNDKW_1915 PF00970 Oxidoreductase FAD-binding domain UNDKW_1915 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_1916 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_1917 PF03061 Thioesterase superfamily UNDKW_1919 PF02803 Thiolase, C-terminal domain UNDKW_1919 PF00108 Thiolase, N-terminal domain UNDKW_1920 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_1921 PF00171 Aldehyde dehydrogenase family UNDKW_1921 PF01575 MaoC like domain UNDKW_1922 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_1922 PF02743 Cache domain UNDKW_1923 PF02705 K+ potassium transporter UNDKW_1925 PF00814 Glycoprotease family UNDKW_1927 PF03167 Uracil DNA glycosylase superfamily UNDKW_1929 PF07690 Major Facilitator Superfamily UNDKW_1930 PF18073 Rubredoxin metal binding domain UNDKW_1931 PF01593 Flavin containing amine oxidoreductase UNDKW_1938 PF00873 AcrB/AcrD/AcrF family UNDKW_1939 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UNDKW_1939 PF05698 Bacterial trigger factor protein (TF) C-terminus UNDKW_1939 PF05697 Bacterial trigger factor protein (TF) UNDKW_1940 PF00574 Clp protease UNDKW_1941 PF07724 AAA domain (Cdc48 subfamily) UNDKW_1941 PF10431 C-terminal, D2-small domain, of ClpB protein UNDKW_1941 PF06689 ClpX C4-type zinc finger UNDKW_1942 PF02190 ATP-dependent protease La (LON) substrate-binding domain UNDKW_1942 PF05362 Lon protease (S16) C-terminal proteolytic domain UNDKW_1942 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_1943 PF01726 LexA DNA binding domain UNDKW_1943 PF00717 Peptidase S24-like UNDKW_1944 PF01250 Ribosomal protein S6 UNDKW_1946 PF01084 Ribosomal protein S18 UNDKW_1947 PF01281 Ribosomal protein L9, N-terminal domain UNDKW_1947 PF03948 Ribosomal protein L9, C-terminal domain UNDKW_1948 PF00772 DnaB-like helicase N terminal domain UNDKW_1948 PF03796 DnaB-like helicase C terminal domain UNDKW_1950 PF01384 Phosphate transporter family UNDKW_1951 PF00072 Response regulator receiver domain UNDKW_1951 PF04397 LytTr DNA-binding domain UNDKW_1952 PF06580 Histidine kinase UNDKW_1953 PF03707 Bacterial signalling protein N terminal repeat UNDKW_1953 PF00563 EAL domain UNDKW_1953 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_1954 PF01264 Chorismate synthase UNDKW_1955 PF00330 Aconitase family (aconitate hydratase) UNDKW_1956 PF00694 Aconitase C-terminal domain UNDKW_1957 PF00180 Isocitrate/isopropylmalate dehydrogenase UNDKW_1958 PF02774 Semialdehyde dehydrogenase, dimerisation domain UNDKW_1958 PF01118 Semialdehyde dehydrogenase, NAD binding domain UNDKW_1960 PF01416 tRNA pseudouridine synthase UNDKW_1961 PF00679 Elongation factor G C-terminus UNDKW_1961 PF03144 Elongation factor Tu domain 2 UNDKW_1961 PF06421 GTP-binding protein LepA C-terminus UNDKW_1961 PF00009 Elongation factor Tu GTP binding domain UNDKW_1962 PF10502 Signal peptidase, peptidase S26 UNDKW_1964 PF14622 Ribonuclease-III-like UNDKW_1964 PF00035 Double-stranded RNA binding motif UNDKW_1965 PF00035 Double-stranded RNA binding motif UNDKW_1965 PF14622 Ribonuclease-III-like UNDKW_1966 PF01926 50S ribosome-binding GTPase UNDKW_1966 PF07650 KH domain UNDKW_1967 PF02565 Recombination protein O C terminal UNDKW_1967 PF11967 Recombination protein O N terminal UNDKW_1968 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ UNDKW_1969 PF01648 4'-phosphopantetheinyl transferase superfamily UNDKW_1970 PF01541 GIY-YIG catalytic domain UNDKW_1970 PF08459 UvrC Helix-hairpin-helix N-terminal UNDKW_1970 PF02151 UvrB/uvrC motif UNDKW_1971 PF02151 UvrB/uvrC motif UNDKW_1971 PF01541 GIY-YIG catalytic domain UNDKW_1971 PF08459 UvrC Helix-hairpin-helix N-terminal UNDKW_1972 PF01066 CDP-alcohol phosphatidyltransferase UNDKW_1975 PF00589 Phage integrase family UNDKW_1985 PF18273 Type III R-M EcoP15I C-terminal domain UNDKW_1985 PF01555 DNA methylase UNDKW_1987 PF13438 Domain of unknown function (DUF4113) UNDKW_1987 PF00817 impB/mucB/samB family UNDKW_1987 PF11799 impB/mucB/samB family C-terminal domain UNDKW_1987 PF11798 IMS family HHH motif UNDKW_1988 PF00717 Peptidase S24-like UNDKW_1993 PF13340 Putative transposase of IS4/5 family (DUF4096) UNDKW_1998 PF01757 Acyltransferase family UNDKW_1999 PF00211 Adenylate and Guanylate cyclase catalytic domain UNDKW_2001 PF01435 Peptidase family M48 UNDKW_2003 PF00440 Bacterial regulatory proteins, tetR family UNDKW_2003 PF13977 BetI-type transcriptional repressor, C-terminal UNDKW_2004 PF00440 Bacterial regulatory proteins, tetR family UNDKW_2005 PF01494 FAD binding domain UNDKW_2006 PF07690 Major Facilitator Superfamily UNDKW_2007 PF01312 FlhB HrpN YscU SpaS Family UNDKW_2008 PF00771 FHIPEP family UNDKW_2009 PF00448 SRP54-type protein, GTPase domain UNDKW_2011 PF04545 Sigma-70, region 4 UNDKW_2011 PF04542 Sigma-70 region 2 UNDKW_2011 PF04539 Sigma-70 region 3 UNDKW_2012 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_2013 PF13677 Membrane MotB of proton-channel complex MotA/MotB UNDKW_2013 PF00691 OmpA family UNDKW_2016 PF13144 Chaperone for flagella basal body P-ring formation UNDKW_2016 PF17656 FlgA N-terminal domain UNDKW_2017 PF00460 Flagella basal body rod protein UNDKW_2018 PF00460 Flagella basal body rod protein UNDKW_2018 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_2019 PF03963 Flagellar hook capping protein - N-terminal region UNDKW_2019 PF13860 FlgD Ig-like domain UNDKW_2019 PF13861 FlgD Tudor-like domain UNDKW_2020 PF00460 Flagella basal body rod protein UNDKW_2020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_2020 PF07559 Flagellar basal body protein FlaE UNDKW_2021 PF00460 Flagella basal body rod protein UNDKW_2021 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_2022 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_2022 PF00460 Flagella basal body rod protein UNDKW_2023 PF02107 Flagellar L-ring protein UNDKW_2024 PF02119 Flagellar P-ring protein UNDKW_2025 PF10135 Rod binding protein UNDKW_2025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UNDKW_2026 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_2026 PF00460 Flagella basal body rod protein UNDKW_2027 PF00669 Bacterial flagellin N-terminal helical region UNDKW_2031 PF03169 OPT oligopeptide transporter protein UNDKW_2033 PF00929 Exonuclease UNDKW_2034 PF00854 POT family UNDKW_2035 PF02625 XdhC and CoxI family UNDKW_2035 PF13478 XdhC Rossmann domain UNDKW_2036 PF02567 Phenazine biosynthesis-like protein UNDKW_2037 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UNDKW_2037 PF00925 GTP cyclohydrolase II UNDKW_2038 PF00885 6,7-dimethyl-8-ribityllumazine synthase UNDKW_2039 PF01029 NusB family UNDKW_2040 PF00155 Aminotransferase class I and II UNDKW_2042 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UNDKW_2044 PF13593 SBF-like CPA transporter family (DUF4137) UNDKW_2045 PF01261 Xylose isomerase-like TIM barrel UNDKW_2046 PF16884 N-terminal domain of oxidoreductase UNDKW_2046 PF00107 Zinc-binding dehydrogenase UNDKW_2047 PF00551 Formyl transferase UNDKW_2048 PF07152 YaeQ protein UNDKW_2049 PF01757 Acyltransferase family UNDKW_2051 PF02230 Phospholipase/Carboxylesterase UNDKW_2052 PF04307 LexA-binding, inner membrane-associated putative hydrolase UNDKW_2053 PF00994 Probable molybdopterin binding domain UNDKW_2054 PF04751 Protein of unknown function (DUF615) UNDKW_2055 PF01523 Putative modulator of DNA gyrase UNDKW_2056 PF00005 ABC transporter UNDKW_2057 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_2057 PF00005 ABC transporter UNDKW_2058 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2058 PF11862 Domain of unknown function (DUF3382) UNDKW_2059 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2060 PF13458 Periplasmic binding protein UNDKW_2061 PF00206 Lyase UNDKW_2061 PF14698 Argininosuccinate lyase C-terminal UNDKW_2062 PF06580 Histidine kinase UNDKW_2062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2062 PF07694 5TMR of 5TMR-LYT UNDKW_2063 PF04397 LytTr DNA-binding domain UNDKW_2063 PF00072 Response regulator receiver domain UNDKW_2064 PF11892 Domain of unknown function (DUF3412) UNDKW_2064 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases UNDKW_2064 PF03641 Possible lysine decarboxylase UNDKW_2065 PF01584 CheW-like domain UNDKW_2065 PF00072 Response regulator receiver domain UNDKW_2068 PF01431 Peptidase family M13 UNDKW_2068 PF05649 Peptidase family M13 UNDKW_2069 PF02445 Quinolinate synthetase A protein UNDKW_2070 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain UNDKW_2070 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain UNDKW_2073 PF00005 ABC transporter UNDKW_2073 PF02687 FtsX-like permease family UNDKW_2073 PF12704 MacB-like periplasmic core domain UNDKW_2076 PF00005 ABC transporter UNDKW_2077 PF02910 Fumarate reductase flavoprotein C-term UNDKW_2077 PF00890 FAD binding domain UNDKW_2078 PF00216 Bacterial DNA-binding protein UNDKW_2079 PF13145 PPIC-type PPIASE domain UNDKW_2080 PF00115 Cytochrome C and Quinol oxidase polypeptide I UNDKW_2083 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP UNDKW_2083 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UNDKW_2084 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase UNDKW_2084 PF12801 4Fe-4S binding domain UNDKW_2084 PF13746 4Fe-4S dicluster domain UNDKW_2087 PF04055 Radical SAM superfamily UNDKW_2087 PF06969 HemN C-terminal domain UNDKW_2091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2091 PF05231 MASE1 UNDKW_2091 PF07730 Histidine kinase UNDKW_2094 PF13545 Crp-like helix-turn-helix domain UNDKW_2094 PF00027 Cyclic nucleotide-binding domain UNDKW_2095 PF01339 CheB methylesterase UNDKW_2095 PF00072 Response regulator receiver domain UNDKW_2096 PF00196 Bacterial regulatory proteins, luxR family UNDKW_2096 PF00072 Response regulator receiver domain UNDKW_2099 PF06224 Winged helix DNA-binding domain UNDKW_2100 PF00579 tRNA synthetases class I (W and Y) UNDKW_2101 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain UNDKW_2101 PF03900 Porphobilinogen deaminase, C-terminal domain UNDKW_2102 PF02602 Uroporphyrinogen-III synthase HemD UNDKW_2103 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase UNDKW_2105 PF00719 Inorganic pyrophosphatase UNDKW_2106 PF03793 PASTA domain UNDKW_2106 PF00069 Protein kinase domain UNDKW_2108 PF02540 NAD synthase UNDKW_2108 PF00795 Carbon-nitrogen hydrolase UNDKW_2109 PF00543 Nitrogen regulatory protein P-II UNDKW_2111 PF01713 Smr domain UNDKW_2112 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_2113 PF01580 FtsK/SpoIIIE family UNDKW_2113 PF13491 4TM region of DNA translocase FtsK/SpoIIIE UNDKW_2113 PF09397 Ftsk gamma domain UNDKW_2113 PF17854 FtsK alpha domain UNDKW_2114 PF03548 Outer membrane lipoprotein carrier protein LolA UNDKW_2115 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_2115 PF16193 AAA C-terminal domain UNDKW_2115 PF12002 MgsA AAA+ ATPase C terminal UNDKW_2117 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UNDKW_2117 PF02403 Seryl-tRNA synthetase N-terminal domain UNDKW_2118 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2118 PF00563 EAL domain UNDKW_2118 PF13188 PAS domain UNDKW_2118 PF03707 Bacterial signalling protein N terminal repeat UNDKW_2125 PF00005 ABC transporter UNDKW_2127 PF02350 UDP-N-acetylglucosamine 2-epimerase UNDKW_2128 PF02350 UDP-N-acetylglucosamine 2-epimerase UNDKW_2130 PF01757 Acyltransferase family UNDKW_2131 PF13640 2OG-Fe(II) oxygenase superfamily UNDKW_2131 PF18331 PKHD-type hydroxylase C-terminal domain UNDKW_2132 PF07715 TonB-dependent Receptor Plug Domain UNDKW_2132 PF00593 TonB dependent receptor UNDKW_2134 PF03453 MoeA N-terminal region (domain I and II) UNDKW_2134 PF00994 Probable molybdopterin binding domain UNDKW_2134 PF03454 MoeA C-terminal region (domain IV) UNDKW_2135 PF02597 ThiS family UNDKW_2136 PF02391 MoaE protein UNDKW_2137 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UNDKW_2139 PF00561 alpha/beta hydrolase fold UNDKW_2141 PF07724 AAA domain (Cdc48 subfamily) UNDKW_2141 PF10431 C-terminal, D2-small domain, of ClpB protein UNDKW_2141 PF02861 Clp amino terminal domain, pathogenicity island component UNDKW_2141 PF17871 AAA lid domain UNDKW_2141 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_2144 PF03737 Aldolase/RraA UNDKW_2148 PF01026 TatD related DNase UNDKW_2149 PF00753 Metallo-beta-lactamase superfamily UNDKW_2149 PF03772 Competence protein UNDKW_2150 PF08386 TAP-like protein UNDKW_2150 PF00561 alpha/beta hydrolase fold UNDKW_2152 PF06418 CTP synthase N-terminus UNDKW_2152 PF00117 Glutamine amidotransferase class-I UNDKW_2153 PF03952 Enolase, N-terminal domain UNDKW_2153 PF00113 Enolase, C-terminal TIM barrel domain UNDKW_2154 PF04977 Septum formation initiator UNDKW_2158 PF00005 ABC transporter UNDKW_2159 PF00005 ABC transporter UNDKW_2159 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_2161 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2162 PF13193 AMP-binding enzyme C-terminal domain UNDKW_2162 PF00501 AMP-binding enzyme UNDKW_2164 PF01494 FAD binding domain UNDKW_2165 PF00106 short chain dehydrogenase UNDKW_2167 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_2168 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2168 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2168 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2171 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_2171 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain UNDKW_2171 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_2172 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2172 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2172 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2174 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2174 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2174 PF18158 Adaptive response protein AidB N-terminal domain UNDKW_2176 PF12169 DNA polymerase III subunits gamma and tau domain III UNDKW_2176 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding UNDKW_2176 PF12170 DNA polymerase III tau subunit V interacting with alpha UNDKW_2177 PF02575 YbaB/EbfC DNA-binding family UNDKW_2178 PF13662 Toprim domain UNDKW_2178 PF02132 RecR protein UNDKW_2180 PF02515 CoA-transferase family III UNDKW_2181 PF01914 MarC family integral membrane protein UNDKW_2185 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2185 PF08334 Type II secretion system (T2SS), protein G UNDKW_2186 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2186 PF12019 Type II transport protein GspH UNDKW_2187 PF02501 Type II secretion system (T2SS), protein I UNDKW_2187 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2188 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2188 PF11612 Type II secretion system (T2SS), protein J UNDKW_2193 PF00263 Bacterial type II and III secretion system protein UNDKW_2193 PF03958 Bacterial type II/III secretion system short domain UNDKW_2194 PF00437 Type II/IV secretion system protein UNDKW_2195 PF00482 Type II secretion system (T2SS), protein F UNDKW_2198 PF01966 HD domain UNDKW_2198 PF11871 Domain of unknown function (DUF3391) UNDKW_2199 PF08659 KR domain UNDKW_2199 PF14765 Polyketide synthase dehydratase UNDKW_2199 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_2199 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_2199 PF00698 Acyl transferase domain UNDKW_2199 PF00550 Phosphopantetheine attachment site UNDKW_2199 PF16197 Ketoacyl-synthetase C-terminal extension UNDKW_2199 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_2199 PF08990 Erythronolide synthase docking UNDKW_2200 PF01975 Survival protein SurE UNDKW_2202 PF01476 LysM domain UNDKW_2202 PF01551 Peptidase family M23 UNDKW_2203 PF04545 Sigma-70, region 4 UNDKW_2203 PF04542 Sigma-70 region 2 UNDKW_2203 PF04539 Sigma-70 region 3 UNDKW_2203 PF00140 Sigma-70 factor, region 1.2 UNDKW_2204 PF05958 tRNA (Uracil-5-)-methyltransferase UNDKW_2205 PF00334 Nucleoside diphosphate kinase UNDKW_2206 PF04055 Radical SAM superfamily UNDKW_2208 PF13464 Domain of unknown function (DUF4115) UNDKW_2209 PF04551 GcpE protein UNDKW_2210 PF03129 Anticodon binding domain UNDKW_2210 PF13393 Histidyl-tRNA synthetase UNDKW_2212 PF13360 PQQ-like domain UNDKW_2213 PF01926 50S ribosome-binding GTPase UNDKW_2213 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal UNDKW_2214 PF17209 Hfq protein UNDKW_2215 PF13167 GTP-binding GTPase N-terminal UNDKW_2215 PF01926 50S ribosome-binding GTPase UNDKW_2215 PF16360 GTP-binding GTPase Middle Region UNDKW_2216 PF12221 Bacterial membrane protein N terminal UNDKW_2216 PF01145 SPFH domain / Band 7 family UNDKW_2217 PF01145 SPFH domain / Band 7 family UNDKW_2218 PF13393 Histidyl-tRNA synthetase UNDKW_2219 PF00709 Adenylosuccinate synthetase UNDKW_2220 PF00156 Phosphoribosyl transferase domain UNDKW_2221 PF00575 S1 RNA binding domain UNDKW_2221 PF08461 Ribonuclease R winged-helix domain UNDKW_2221 PF08206 Ribonuclease B OB domain UNDKW_2221 PF17876 Cold shock domain UNDKW_2221 PF00773 RNB domain UNDKW_2222 PF08032 RNA 2'-O ribose methyltransferase substrate binding UNDKW_2222 PF00588 SpoU rRNA Methylase family UNDKW_2223 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_2224 PF03853 YjeF-related protein N-terminus UNDKW_2224 PF01256 Carbohydrate kinase UNDKW_2225 PF01311 Bacterial export proteins, family 1 UNDKW_2226 PF01313 Bacterial export proteins, family 3 UNDKW_2227 PF00813 FliP family UNDKW_2228 PF04347 Flagellar biosynthesis protein, FliO UNDKW_2229 PF16973 Flagellar motor switch protein FliN N-terminal UNDKW_2229 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UNDKW_2230 PF02154 Flagellar motor switch protein FliM UNDKW_2230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UNDKW_2233 PF02050 Flagellar FliJ protein UNDKW_2234 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UNDKW_2234 PF18269 T3SS EscN ATPase C-terminal domain UNDKW_2236 PF14841 FliG middle domain UNDKW_2236 PF01706 FliG C-terminal domain UNDKW_2236 PF14842 FliG N-terminal domain UNDKW_2237 PF08345 Flagellar M-ring protein C-terminal UNDKW_2237 PF01514 Secretory protein of YscJ/FliF family UNDKW_2238 PF02049 Flagellar hook-basal body complex protein FliE UNDKW_2239 PF07317 Flagellar regulator YcgR UNDKW_2239 PF07238 PilZ domain UNDKW_2240 PF01312 FlhB HrpN YscU SpaS Family UNDKW_2243 PF02561 Flagellar protein FliS UNDKW_2244 PF07195 Flagellar hook-associated protein 2 C-terminus UNDKW_2244 PF02465 Flagellar hook-associated protein 2 N-terminus UNDKW_2244 PF07195 Flagellar hook-associated protein 2 C-terminus UNDKW_2244 PF02465 Flagellar hook-associated protein 2 N-terminus UNDKW_2246 PF07196 Flagellin hook IN motif UNDKW_2246 PF00700 Bacterial flagellin C-terminal helical region UNDKW_2246 PF00669 Bacterial flagellin N-terminal helical region UNDKW_2249 PF00483 Nucleotidyl transferase UNDKW_2250 PF16363 GDP-mannose 4,6 dehydratase UNDKW_2251 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase UNDKW_2252 PF08484 C-methyltransferase C-terminal domain UNDKW_2252 PF08421 Putative zinc binding domain UNDKW_2255 PF04989 Cephalosporin hydroxylase UNDKW_2256 PF05230 MASE2 domain UNDKW_2256 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2257 PF00196 Bacterial regulatory proteins, luxR family UNDKW_2257 PF00072 Response regulator receiver domain UNDKW_2258 PF01272 Transcription elongation factor, GreA/GreB, C-term UNDKW_2258 PF03449 Transcription elongation factor, N-terminal UNDKW_2260 PF13291 ACT domain UNDKW_2260 PF04607 Region found in RelA / SpoT proteins UNDKW_2260 PF02824 TGS domain UNDKW_2261 PF01192 RNA polymerase Rpb6 UNDKW_2262 PF00625 Guanylate kinase UNDKW_2263 PF03755 YicC-like family, N-terminal region UNDKW_2263 PF08340 Domain of unknown function (DUF1732) UNDKW_2264 PF00069 Protein kinase domain UNDKW_2266 PF01138 3' exoribonuclease family, domain 1 UNDKW_2266 PF03725 3' exoribonuclease family, domain 2 UNDKW_2267 PF01725 Ham1 family UNDKW_2268 PF06969 HemN C-terminal domain UNDKW_2268 PF04055 Radical SAM superfamily UNDKW_2270 PF00563 EAL domain UNDKW_2270 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2270 PF03707 Bacterial signalling protein N terminal repeat UNDKW_2276 PF08334 Type II secretion system (T2SS), protein G UNDKW_2276 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2277 PF00482 Type II secretion system (T2SS), protein F UNDKW_2278 PF00437 Type II/IV secretion system protein UNDKW_2283 PF03958 Bacterial type II/III secretion system short domain UNDKW_2283 PF00263 Bacterial type II and III secretion system protein UNDKW_2285 PF08334 Type II secretion system (T2SS), protein G UNDKW_2285 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2286 PF14245 Type IV pilin PilA UNDKW_2286 PF07963 Prokaryotic N-terminal methylation motif UNDKW_2288 PF18370 Rhamnogalacturonan I lyases beta-sheet domain UNDKW_2288 PF01839 FG-GAP repeat UNDKW_2294 PF01258 Prokaryotic dksA/traR C4-type zinc finger UNDKW_2303 PF01565 FAD binding domain UNDKW_2303 PF02913 FAD linked oxidases, C-terminal domain UNDKW_2304 PF16901 C-terminal domain of alpha-glycerophosphate oxidase UNDKW_2304 PF01266 FAD dependent oxidoreductase UNDKW_2305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UNDKW_2305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UNDKW_2308 PF02954 Bacterial regulatory protein, Fis family UNDKW_2308 PF00072 Response regulator receiver domain UNDKW_2308 PF00158 Sigma-54 interaction domain UNDKW_2309 PF00072 Response regulator receiver domain UNDKW_2311 PF00498 FHA domain UNDKW_2311 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2311 PF00563 EAL domain UNDKW_2312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2312 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2314 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2315 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2316 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_2316 PF00005 ABC transporter UNDKW_2317 PF00005 ABC transporter UNDKW_2318 PF01774 UreD urease accessory protein UNDKW_2320 PF03466 LysR substrate binding domain UNDKW_2320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_2322 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_2327 PF00547 Urease, gamma subunit UNDKW_2328 PF00699 Urease beta subunit UNDKW_2329 PF00449 Urease alpha-subunit, N-terminal domain UNDKW_2329 PF01979 Amidohydrolase family UNDKW_2330 PF02814 UreE urease accessory protein, N-terminal domain UNDKW_2330 PF05194 UreE urease accessory protein, C-terminal domain UNDKW_2331 PF01730 UreF UNDKW_2332 PF02492 CobW/HypB/UreG, nucleotide-binding domain UNDKW_2333 PF04955 HupE / UreJ protein UNDKW_2334 PF00701 Dihydrodipicolinate synthetase family UNDKW_2335 PF01266 FAD dependent oxidoreductase UNDKW_2337 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_2337 PF04324 BFD-like [2Fe-2S] binding domain UNDKW_2338 PF00171 Aldehyde dehydrogenase family UNDKW_2341 PF00440 Bacterial regulatory proteins, tetR family UNDKW_2341 PF17932 Tetracyclin repressor-like, C-terminal domain UNDKW_2342 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2342 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2342 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2343 PF02515 CoA-transferase family III UNDKW_2344 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2344 PF00072 Response regulator receiver domain UNDKW_2344 PF01627 Hpt domain UNDKW_2344 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_2344 PF00672 HAMP domain UNDKW_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2345 PF01979 Amidohydrolase family UNDKW_2346 PF00155 Aminotransferase class I and II UNDKW_2354 PF01177 Asp/Glu/Hydantoin racemase UNDKW_2356 PF03350 Uncharacterized protein family, UPF0114 UNDKW_2357 PF16177 Acetyl-coenzyme A synthetase N-terminus UNDKW_2357 PF00501 AMP-binding enzyme UNDKW_2357 PF13193 AMP-binding enzyme C-terminal domain UNDKW_2358 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_2358 PF17862 AAA+ lid domain UNDKW_2358 PF01434 Peptidase family M41 UNDKW_2359 PF00034 Cytochrome c UNDKW_2360 PF00034 Cytochrome c UNDKW_2362 PF08007 Cupin superfamily protein UNDKW_2363 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UNDKW_2364 PF05192 MutS domain III UNDKW_2364 PF01624 MutS domain I UNDKW_2364 PF05188 MutS domain II UNDKW_2364 PF05190 MutS family domain IV UNDKW_2364 PF00488 MutS domain V UNDKW_2366 PF00270 DEAD/DEAH box helicase UNDKW_2366 PF00271 Helicase conserved C-terminal domain UNDKW_2367 PF00459 Inositol monophosphatase family UNDKW_2368 PF00588 SpoU rRNA Methylase family UNDKW_2371 PF13417 Glutathione S-transferase, N-terminal domain UNDKW_2371 PF14497 Glutathione S-transferase, C-terminal domain UNDKW_2374 PF13307 Helicase C-terminal domain UNDKW_2374 PF06733 DEAD_2 UNDKW_2375 PF05649 Peptidase family M13 UNDKW_2375 PF01431 Peptidase family M13 UNDKW_2376 PF00005 ABC transporter UNDKW_2376 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UNDKW_2377 PF00005 ABC transporter UNDKW_2377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UNDKW_2378 PF12911 N-terminal TM domain of oligopeptide transport permease C UNDKW_2378 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_2379 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_2380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_2382 PF01368 DHH family UNDKW_2382 PF02272 DHHA1 domain UNDKW_2382 PF17768 RecJ OB domain UNDKW_2384 PF02687 FtsX-like permease family UNDKW_2384 PF12704 MacB-like periplasmic core domain UNDKW_2385 PF00005 ABC transporter UNDKW_2388 PF07690 Major Facilitator Superfamily UNDKW_2389 PF13638 PIN domain UNDKW_2389 PF02562 PhoH-like protein UNDKW_2390 PF00578 AhpC/TSA family UNDKW_2391 PF01522 Polysaccharide deacetylase UNDKW_2392 PF02911 Formyl transferase, C-terminal domain UNDKW_2392 PF01370 NAD dependent epimerase/dehydratase family UNDKW_2392 PF00551 Formyl transferase UNDKW_2393 PF02911 Formyl transferase, C-terminal domain UNDKW_2393 PF01370 NAD dependent epimerase/dehydratase family UNDKW_2393 PF00551 Formyl transferase UNDKW_2394 PF00535 Glycosyl transferase family 2 UNDKW_2395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_2397 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase UNDKW_2398 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase UNDKW_2399 PF04430 Protein of unknown function (DUF498/DUF598) UNDKW_2401 PF00155 Aminotransferase class I and II UNDKW_2402 PF01842 ACT domain UNDKW_2402 PF03447 Homoserine dehydrogenase, NAD binding domain UNDKW_2402 PF00742 Homoserine dehydrogenase UNDKW_2406 PF01571 Aminomethyltransferase folate-binding domain UNDKW_2407 PF02618 YceG-like family UNDKW_2408 PF02223 Thymidylate kinase UNDKW_2409 PF02223 Thymidylate kinase UNDKW_2410 PF02223 Thymidylate kinase UNDKW_2411 PF09115 DNA polymerase III, delta subunit, C terminal UNDKW_2413 PF00583 Acetyltransferase (GNAT) family UNDKW_2414 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ UNDKW_2415 PF13193 AMP-binding enzyme C-terminal domain UNDKW_2415 PF00501 AMP-binding enzyme UNDKW_2417 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2419 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_2419 PF00005 ABC transporter UNDKW_2420 PF00005 ABC transporter UNDKW_2421 PF07694 5TMR of 5TMR-LYT UNDKW_2421 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2422 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_2422 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_2422 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_2423 PF00005 ABC transporter UNDKW_2423 PF12848 ABC transporter UNDKW_2425 PF07664 Ferrous iron transport protein B C terminus UNDKW_2425 PF07670 Nucleoside recognition UNDKW_2425 PF02421 Ferrous iron transport protein B UNDKW_2434 PF00970 Oxidoreductase FAD-binding domain UNDKW_2434 PF00175 Oxidoreductase NAD-binding domain UNDKW_2434 PF00042 Globin UNDKW_2435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2435 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2438 PF17757 UvrB interaction domain UNDKW_2438 PF00270 DEAD/DEAH box helicase UNDKW_2438 PF03461 TRCF domain UNDKW_2438 PF00271 Helicase conserved C-terminal domain UNDKW_2438 PF02559 CarD-like/TRCF domain UNDKW_2439 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UNDKW_2440 PF02542 YgbB family UNDKW_2442 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UNDKW_2443 PF00226 DnaJ domain UNDKW_2443 PF01556 DnaJ C terminal domain UNDKW_2443 PF00684 DnaJ central domain UNDKW_2451 PF00465 Iron-containing alcohol dehydrogenase UNDKW_2452 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UNDKW_2453 PF02545 Maf-like protein UNDKW_2454 PF02620 Large ribosomal RNA subunit accumulation protein YceD UNDKW_2455 PF01783 Ribosomal L32p protein family UNDKW_2456 PF02504 Fatty acid synthesis protein UNDKW_2457 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III UNDKW_2457 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UNDKW_2458 PF00698 Acyl transferase domain UNDKW_2460 PF00550 Phosphopantetheine attachment site UNDKW_2461 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_2461 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_2462 PF04542 Sigma-70 region 2 UNDKW_2462 PF08281 Sigma-70, region 4 UNDKW_2465 PF17820 PDZ domain UNDKW_2465 PF13180 PDZ domain UNDKW_2467 PF01351 Ribonuclease HII UNDKW_2468 PF00588 SpoU rRNA Methylase family UNDKW_2468 PF08032 RNA 2'-O ribose methyltransferase substrate binding UNDKW_2469 PF03618 Kinase/pyrophosphorylase UNDKW_2470 PF02896 PEP-utilising enzyme, TIM barrel domain UNDKW_2470 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain UNDKW_2470 PF00391 PEP-utilising enzyme, mobile domain UNDKW_2472 PF01145 SPFH domain / Band 7 family UNDKW_2476 PF05114 Protein of unknown function (DUF692) UNDKW_2481 PF01522 Polysaccharide deacetylase UNDKW_2481 PF00457 Glycosyl hydrolases family 11 UNDKW_2483 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UNDKW_2486 PF06167 Glucose-regulated metallo-peptidase M90 UNDKW_2487 PF00005 ABC transporter UNDKW_2487 PF12848 ABC transporter UNDKW_2488 PF05175 Methyltransferase small domain UNDKW_2489 PF07687 Peptidase dimerisation domain UNDKW_2489 PF01546 Peptidase family M20/M25/M40 UNDKW_2490 PF03960 ArsC family UNDKW_2491 PF00437 Type II/IV secretion system protein UNDKW_2492 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal UNDKW_2492 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_2492 PF14602 Hexapeptide repeat of succinyl-transferase UNDKW_2493 PF00155 Aminotransferase class I and II UNDKW_2494 PF02463 RecF/RecN/SMC N terminal domain UNDKW_2494 PF06470 SMC proteins Flexible Hinge Domain UNDKW_2496 PF03120 NAD-dependent DNA ligase OB-fold domain UNDKW_2496 PF01653 NAD-dependent DNA ligase adenylation domain UNDKW_2496 PF00533 BRCA1 C Terminus (BRCT) domain UNDKW_2496 PF03119 NAD-dependent DNA ligase C4 zinc finger domain UNDKW_2496 PF12826 Helix-hairpin-helix motif UNDKW_2497 PF00483 Nucleotidyl transferase UNDKW_2498 PF01327 Polypeptide deformylase UNDKW_2499 PF01479 S4 domain UNDKW_2499 PF00849 RNA pseudouridylate synthase UNDKW_2500 PF01909 Nucleotidyltransferase domain UNDKW_2500 PF01842 ACT domain UNDKW_2500 PF01966 HD domain UNDKW_2500 PF08335 GlnD PII-uridylyltransferase UNDKW_2501 PF00557 Metallopeptidase family M24 UNDKW_2502 PF00318 Ribosomal protein S2 UNDKW_2503 PF00889 Elongation factor TS UNDKW_2504 PF00696 Amino acid kinase family UNDKW_2505 PF01765 Ribosome recycling factor UNDKW_2506 PF01255 Putative undecaprenyl diphosphate synthase UNDKW_2508 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase UNDKW_2508 PF13288 DXP reductoisomerase C-terminal domain UNDKW_2508 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain UNDKW_2509 PF17820 PDZ domain UNDKW_2509 PF02163 Peptidase family M50 UNDKW_2510 PF07244 Surface antigen variable number repeat UNDKW_2510 PF01103 Surface antigen UNDKW_2512 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD UNDKW_2512 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_2513 PF07977 FabA-like domain UNDKW_2514 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_2514 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 UNDKW_2515 PF02684 Lipid-A-disaccharide synthetase UNDKW_2516 PF01026 TatD related DNase UNDKW_2517 PF12796 Ankyrin repeats (3 copies) UNDKW_2519 PF00005 ABC transporter UNDKW_2520 PF14579 Helix-hairpin-helix motif UNDKW_2520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UNDKW_2520 PF07733 Bacterial DNA polymerase III alpha NTPase domain UNDKW_2520 PF02811 PHP domain UNDKW_2527 PF00550 Phosphopantetheine attachment site UNDKW_2527 PF00668 Condensation domain UNDKW_2527 PF13193 AMP-binding enzyme C-terminal domain UNDKW_2527 PF00501 AMP-binding enzyme UNDKW_2527 PF00975 Thioesterase domain UNDKW_2528 PF01527 Transposase UNDKW_2529 PF00665 Integrase core domain UNDKW_2529 PF13276 HTH-like domain UNDKW_2529 PF13333 Integrase core domain UNDKW_2530 PF01348 Type II intron maturase UNDKW_2530 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) UNDKW_2531 PF00665 Integrase core domain UNDKW_2531 PF13276 HTH-like domain UNDKW_2531 PF13333 Integrase core domain UNDKW_2535 PF00034 Cytochrome c UNDKW_2535 PF03150 Di-haem cytochrome c peroxidase UNDKW_2553 PF10459 Peptidase S46 UNDKW_2554 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2554 PF00989 PAS fold UNDKW_2554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2555 PF09084 NMT1/THI5 like UNDKW_2556 PF00491 Arginase family UNDKW_2559 PF00072 Response regulator receiver domain UNDKW_2559 PF01627 Hpt domain UNDKW_2559 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2559 PF00672 HAMP domain UNDKW_2559 PF17149 Periplasmic sensor domain found in signal transduction proteins UNDKW_2560 PF02082 Transcriptional regulator UNDKW_2564 PF00892 EamA-like transporter family UNDKW_2565 PF00043 Glutathione S-transferase, C-terminal domain UNDKW_2565 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_2568 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2568 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2568 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2569 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2569 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2569 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2570 PF00171 Aldehyde dehydrogenase family UNDKW_2570 PF01575 MaoC like domain UNDKW_2571 PF01575 MaoC like domain UNDKW_2575 PF01928 CYTH domain UNDKW_2576 PF00246 Zinc carboxypeptidase UNDKW_2576 PF18027 Cytosolic carboxypeptidase N-terminal domain UNDKW_2577 PF04616 Glycosyl hydrolases family 43 UNDKW_2578 PF06964 Alpha-L-arabinofuranosidase C-terminal domain UNDKW_2582 PF00657 GDSL-like Lipase/Acylhydrolase UNDKW_2585 PF00331 Glycosyl hydrolase family 10 UNDKW_2585 PF07859 alpha/beta hydrolase fold UNDKW_2586 PF05336 L-rhamnose mutarotase UNDKW_2587 PF07470 Glycosyl Hydrolase Family 88 UNDKW_2588 PF00295 Glycosyl hydrolases family 28 UNDKW_2590 PF01261 Xylose isomerase-like TIM barrel UNDKW_2591 PF00596 Class II Aldolase and Adducin N-terminal domain UNDKW_2592 PF08220 DeoR-like helix-turn-helix domain UNDKW_2592 PF00455 DeoR C terminal sensor domain UNDKW_2593 PF13407 Periplasmic binding protein domain UNDKW_2594 PF00005 ABC transporter UNDKW_2595 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2596 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2598 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain UNDKW_2598 PF04616 Glycosyl hydrolases family 43 UNDKW_2600 PF03466 LysR substrate binding domain UNDKW_2600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_2602 PF02653 Branched-chain amino acid transport system / permease component UNDKW_2603 PF00005 ABC transporter UNDKW_2604 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UNDKW_2605 PF08450 SMP-30/Gluconolactonase/LRE-like region UNDKW_2606 PF01081 KDPG and KHG aldolase UNDKW_2607 PF05035 2-keto-3-deoxy-galactonokinase UNDKW_2608 PF13378 Enolase C-terminal domain-like UNDKW_2608 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UNDKW_2609 PF12708 Pectate lyase superfamily protein UNDKW_2609 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UNDKW_2609 PF08548 Peptidase M10 serralysin C terminal UNDKW_2611 PF18370 Rhamnogalacturonan I lyases beta-sheet domain UNDKW_2614 PF13472 GDSL-like Lipase/Acylhydrolase family UNDKW_2615 PF00657 GDSL-like Lipase/Acylhydrolase UNDKW_2619 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UNDKW_2619 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UNDKW_2623 PF00892 EamA-like transporter family UNDKW_2625 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_2625 PF13007 Transposase C of IS166 homeodomain UNDKW_2625 PF13817 IS66 C-terminal element UNDKW_2625 PF03050 Transposase IS66 family UNDKW_2630 PF14821 Threonine synthase N terminus UNDKW_2630 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_2631 PF02634 FdhD/NarQ family UNDKW_2632 PF00384 Molybdopterin oxidoreductase UNDKW_2634 PF00155 Aminotransferase class I and II UNDKW_2635 PF01370 NAD dependent epimerase/dehydratase family UNDKW_2636 PF03315 Serine dehydratase beta chain UNDKW_2636 PF03313 Serine dehydratase alpha chain UNDKW_2641 PF13404 AsnC-type helix-turn-helix domain UNDKW_2641 PF01037 Lrp/AsnC ligand binding domain UNDKW_2642 PF00158 Sigma-54 interaction domain UNDKW_2642 PF00989 PAS fold UNDKW_2642 PF02954 Bacterial regulatory protein, Fis family UNDKW_2643 PF00171 Aldehyde dehydrogenase family UNDKW_2645 PF02082 Transcriptional regulator UNDKW_2646 PF00266 Aminotransferase class-V UNDKW_2647 PF01592 NifU-like N terminal domain UNDKW_2648 PF01521 Iron-sulphur cluster biosynthesis UNDKW_2649 PF07743 HSCB C-terminal oligomerisation domain UNDKW_2650 PF00012 Hsp70 protein UNDKW_2651 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_2652 PF04384 Iron-sulphur cluster assembly UNDKW_2653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2653 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2654 PF00303 Thymidylate synthase UNDKW_2655 PF00186 Dihydrofolate reductase UNDKW_2657 PF06629 MltA-interacting protein MipA UNDKW_2658 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain UNDKW_2658 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UNDKW_2658 PF01276 Orn/Lys/Arg decarboxylase, major domain UNDKW_2662 PF04960 Glutaminase UNDKW_2663 PF00692 dUTPase UNDKW_2664 PF04055 Radical SAM superfamily UNDKW_2664 PF11842 Domain of unknown function (DUF3362) UNDKW_2664 PF08497 Radical SAM N-terminal UNDKW_2666 PF03462 PCRF domain UNDKW_2666 PF00472 RF-1 domain UNDKW_2667 PF00152 tRNA synthetases class II (D, K and N) UNDKW_2667 PF01336 OB-fold nucleic acid binding domain UNDKW_2668 PF00005 ABC transporter UNDKW_2668 PF00664 ABC transporter transmembrane region UNDKW_2670 PF01593 Flavin containing amine oxidoreductase UNDKW_2672 PF00571 CBS domain UNDKW_2672 PF00005 ABC transporter UNDKW_2673 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_2674 PF00561 alpha/beta hydrolase fold UNDKW_2675 PF01810 LysE type translocator UNDKW_2679 PF00672 HAMP domain UNDKW_2679 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2679 PF02203 Tar ligand binding domain homologue UNDKW_2682 PF03061 Thioesterase superfamily UNDKW_2683 PF00561 alpha/beta hydrolase fold UNDKW_2686 PF16884 N-terminal domain of oxidoreductase UNDKW_2686 PF00107 Zinc-binding dehydrogenase UNDKW_2690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_2690 PF12806 Acetyl-CoA dehydrogenase C-terminal like UNDKW_2690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_2690 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_2691 PF02803 Thiolase, C-terminal domain UNDKW_2691 PF00108 Thiolase, N-terminal domain UNDKW_2692 PF08946 Osmosensory transporter coiled coil UNDKW_2692 PF00083 Sugar (and other) transporter UNDKW_2693 PF17676 LD-carboxypeptidase C-terminal domain UNDKW_2693 PF02016 LD-carboxypeptidase N-terminal domain UNDKW_2694 PF14437 MafB19-like deaminase UNDKW_2698 PF00958 GMP synthase C terminal domain UNDKW_2698 PF00117 Glutamine amidotransferase class-I UNDKW_2698 PF02540 NAD synthase UNDKW_2700 PF00478 IMP dehydrogenase / GMP reductase domain UNDKW_2700 PF00571 CBS domain UNDKW_2703 PF03658 RnfH family Ubiquitin UNDKW_2705 PF01668 SmpB protein UNDKW_2707 PF00486 Transcriptional regulatory protein, C terminal UNDKW_2707 PF00072 Response regulator receiver domain UNDKW_2708 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2708 PF00672 HAMP domain UNDKW_2712 PF00155 Aminotransferase class I and II UNDKW_2716 PF03969 AFG1-like ATPase UNDKW_2717 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_2717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UNDKW_2719 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UNDKW_2719 PF02817 e3 binding domain UNDKW_2719 PF00364 Biotin-requiring enzyme UNDKW_2720 PF16078 2-oxoglutarate dehydrogenase N-terminus UNDKW_2720 PF00676 Dehydrogenase E1 component UNDKW_2720 PF02779 Transketolase, pyrimidine binding domain UNDKW_2720 PF16870 2-oxoglutarate dehydrogenase C-terminal UNDKW_2721 PF00285 Citrate synthase, C-terminal domain UNDKW_2722 PF03937 Flavinator of succinate dehydrogenase UNDKW_2723 PF13085 2Fe-2S iron-sulfur cluster binding domain UNDKW_2724 PF02910 Fumarate reductase flavoprotein C-term UNDKW_2724 PF00890 FAD binding domain UNDKW_2726 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UNDKW_2727 PF07702 UTRA domain UNDKW_2727 PF00392 Bacterial regulatory proteins, gntR family UNDKW_2728 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UNDKW_2728 PF00056 lactate/malate dehydrogenase, NAD binding domain UNDKW_2731 PF00330 Aconitase family (aconitate hydratase) UNDKW_2731 PF00694 Aconitase C-terminal domain UNDKW_2733 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_2737 PF18693 TRAM domain UNDKW_2737 PF00919 Uncharacterized protein family UPF0004 UNDKW_2737 PF04055 Radical SAM superfamily UNDKW_2738 PF07879 PHB/PHA accumulation regulator DNA-binding domain UNDKW_2738 PF05233 PHB accumulation regulatory domain UNDKW_2739 PF00106 short chain dehydrogenase UNDKW_2740 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus UNDKW_2743 PF00849 RNA pseudouridylate synthase UNDKW_2743 PF01479 S4 domain UNDKW_2744 PF13525 Outer membrane lipoprotein UNDKW_2745 PF03883 Peroxide stress protein YaaA UNDKW_2747 PF04344 Chemotaxis phosphatase, CheZ UNDKW_2748 PF00072 Response regulator receiver domain UNDKW_2748 PF01627 Hpt domain UNDKW_2748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2748 PF02895 Signal transducing histidine kinase, homodimeric domain UNDKW_2748 PF01584 CheW-like domain UNDKW_2749 PF02696 Uncharacterized ACR, YdiU/UPF0061 family UNDKW_2750 PF01641 SelR domain UNDKW_2751 PF04279 Intracellular septation protein A UNDKW_2755 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal UNDKW_2755 PF02769 AIR synthase related protein, C-terminal domain UNDKW_2755 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain UNDKW_2756 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase UNDKW_2758 PF00072 Response regulator receiver domain UNDKW_2759 PF01339 CheB methylesterase UNDKW_2759 PF00072 Response regulator receiver domain UNDKW_2760 PF03975 CheD chemotactic sensory transduction UNDKW_2761 PF03705 CheR methyltransferase, all-alpha domain UNDKW_2761 PF01739 CheR methyltransferase, SAM binding domain UNDKW_2762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2762 PF00672 HAMP domain UNDKW_2762 PF02203 Tar ligand binding domain homologue UNDKW_2763 PF01584 CheW-like domain UNDKW_2764 PF09078 CheY binding UNDKW_2764 PF01584 CheW-like domain UNDKW_2764 PF02895 Signal transducing histidine kinase, homodimeric domain UNDKW_2764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2764 PF01627 Hpt domain UNDKW_2765 PF00072 Response regulator receiver domain UNDKW_2767 PF13677 Membrane MotB of proton-channel complex MotA/MotB UNDKW_2767 PF00691 OmpA family UNDKW_2768 PF01618 MotA/TolQ/ExbB proton channel family UNDKW_2770 PF05280 Flagellar transcriptional activator (FlhC) UNDKW_2771 PF05247 Flagellar transcriptional activator (FlhD) UNDKW_2772 PF00929 Exonuclease UNDKW_2773 PF01171 PP-loop family UNDKW_2773 PF11734 TilS substrate C-terminal domain UNDKW_2773 PF09179 TilS substrate binding domain UNDKW_2774 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UNDKW_2777 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UNDKW_2778 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UNDKW_2779 PF00149 Calcineurin-like phosphoesterase UNDKW_2780 PF00005 ABC transporter UNDKW_2781 PF13472 GDSL-like Lipase/Acylhydrolase family UNDKW_2782 PF00581 Rhodanese-like domain UNDKW_2784 PF00403 Heavy-metal-associated domain UNDKW_2785 PF06965 Na+/H+ antiporter 1 UNDKW_2785 PF01343 Peptidase family S49 UNDKW_2787 PF13419 Haloacid dehalogenase-like hydrolase UNDKW_2788 PF00849 RNA pseudouridylate synthase UNDKW_2788 PF01479 S4 domain UNDKW_2789 PF00575 S1 RNA binding domain UNDKW_2789 PF12111 Polyribonucleotide phosphorylase C terminal UNDKW_2789 PF10150 Ribonuclease E/G family UNDKW_2791 PF04055 Radical SAM superfamily UNDKW_2791 PF06463 Molybdenum Cofactor Synthesis C UNDKW_2792 PF12804 MobA-like NTP transferase domain UNDKW_2793 PF03454 MoeA C-terminal region (domain IV) UNDKW_2793 PF03453 MoeA N-terminal region (domain I and II) UNDKW_2793 PF00994 Probable molybdopterin binding domain UNDKW_2794 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UNDKW_2798 PF13426 PAS domain UNDKW_2798 PF08448 PAS fold UNDKW_2798 PF08447 PAS fold UNDKW_2798 PF00563 EAL domain UNDKW_2798 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2798 PF05231 MASE1 UNDKW_2800 PF09278 MerR, DNA binding UNDKW_2800 PF00376 MerR family regulatory protein UNDKW_2801 PF02646 RmuC family UNDKW_2803 PF14834 Glutathione S-transferase, C-terminal domain UNDKW_2803 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_2805 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_2806 PF00561 alpha/beta hydrolase fold UNDKW_2807 PF13193 AMP-binding enzyme C-terminal domain UNDKW_2807 PF00501 AMP-binding enzyme UNDKW_2811 PF04305 Protein of unknown function (DUF455) UNDKW_2812 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_2813 PF01430 Hsp33 protein UNDKW_2815 PF13411 MerR HTH family regulatory protein UNDKW_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2818 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2818 PF00989 PAS fold UNDKW_2819 PF00005 ABC transporter UNDKW_2821 PF01432 Peptidase family M3 UNDKW_2821 PF08439 Oligopeptidase F UNDKW_2822 PF10459 Peptidase S46 UNDKW_2824 PF00892 EamA-like transporter family UNDKW_2825 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold UNDKW_2825 PF00271 Helicase conserved C-terminal domain UNDKW_2825 PF04408 Helicase associated domain (HA2) UNDKW_2825 PF00270 DEAD/DEAH box helicase UNDKW_2825 PF11898 Domain of unknown function (DUF3418) UNDKW_2827 PF00583 Acetyltransferase (GNAT) family UNDKW_2827 PF00696 Amino acid kinase family UNDKW_2828 PF04362 Bacterial Fe(2+) trafficking UNDKW_2829 PF00484 Carbonic anhydrase UNDKW_2830 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) UNDKW_2831 PF01636 Phosphotransferase enzyme family UNDKW_2832 PF02810 SEC-C motif UNDKW_2832 PF03695 Uncharacterised protein family (UPF0149) UNDKW_2834 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UNDKW_2834 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UNDKW_2835 PF00037 4Fe-4S binding domain UNDKW_2835 PF11953 Domain of unknown function (DUF3470) UNDKW_2837 PF00072 Response regulator receiver domain UNDKW_2838 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_2838 PF00072 Response regulator receiver domain UNDKW_2838 PF01627 Hpt domain UNDKW_2838 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2838 PF00672 HAMP domain UNDKW_2840 PF04060 Putative Fe-S cluster UNDKW_2841 PF10576 Iron-sulfur binding domain of endonuclease III UNDKW_2841 PF00730 HhH-GPD superfamily base excision DNA repair protein UNDKW_2841 PF00633 Helix-hairpin-helix motif UNDKW_2842 PF00881 Nitroreductase family UNDKW_2844 PF06804 NlpB/DapX lipoprotein UNDKW_2845 PF00701 Dihydrodipicolinate synthetase family UNDKW_2847 PF02163 Peptidase family M50 UNDKW_2848 PF01300 Telomere recombination UNDKW_2849 PF01435 Peptidase family M48 UNDKW_2850 PF02811 PHP domain UNDKW_2853 PF00005 ABC transporter UNDKW_2854 PF00156 Phosphoribosyl transferase domain UNDKW_2856 PF05036 Sporulation related domain UNDKW_2857 PF02875 Mur ligase family, glutamate ligase domain UNDKW_2857 PF08245 Mur ligase middle domain UNDKW_2858 PF01039 Carboxyl transferase domain UNDKW_2858 PF17848 Acetyl-coA carboxylase zinc finger domain UNDKW_2859 PF00290 Tryptophan synthase alpha chain UNDKW_2860 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_2861 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UNDKW_2864 PF03808 Glycosyl transferase WecB/TagA/CpsF family UNDKW_2865 PF00463 Isocitrate lyase family UNDKW_2868 PF00535 Glycosyl transferase family 2 UNDKW_2869 PF13807 G-rich domain on putative tyrosine kinase UNDKW_2869 PF02706 Chain length determinant protein UNDKW_2869 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UNDKW_2872 PF01501 Glycosyl transferase family 8 UNDKW_2872 PF00535 Glycosyl transferase family 2 UNDKW_2873 PF02397 Bacterial sugar transferase UNDKW_2875 PF03631 Virulence factor BrkB UNDKW_2876 PF03358 NADPH-dependent FMN reductase UNDKW_2878 PF02913 FAD linked oxidases, C-terminal domain UNDKW_2878 PF01565 FAD binding domain UNDKW_2879 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2879 PF02203 Tar ligand binding domain homologue UNDKW_2879 PF00672 HAMP domain UNDKW_2880 PF00149 Calcineurin-like phosphoesterase UNDKW_2882 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UNDKW_2882 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UNDKW_2882 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UNDKW_2882 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UNDKW_2883 PF00809 Pterin binding enzyme UNDKW_2884 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_2884 PF17862 AAA+ lid domain UNDKW_2884 PF06480 FtsH Extracellular UNDKW_2884 PF01434 Peptidase family M41 UNDKW_2885 PF01728 FtsJ-like methyltransferase UNDKW_2887 PF01272 Transcription elongation factor, GreA/GreB, C-term UNDKW_2887 PF03449 Transcription elongation factor, N-terminal UNDKW_2888 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UNDKW_2888 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UNDKW_2888 PF02142 MGS-like domain UNDKW_2889 PF00117 Glutamine amidotransferase class-I UNDKW_2889 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UNDKW_2890 PF03928 Haem-degrading UNDKW_2891 PF00877 NlpC/P60 family UNDKW_2892 PF01734 Patatin-like phospholipase UNDKW_2893 PF02872 5'-nucleotidase, C-terminal domain UNDKW_2893 PF00149 Calcineurin-like phosphoesterase UNDKW_2895 PF01566 Natural resistance-associated macrophage protein UNDKW_2896 PF00072 Response regulator receiver domain UNDKW_2896 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2897 PF01627 Hpt domain UNDKW_2897 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_2897 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_2897 PF00072 Response regulator receiver domain UNDKW_2897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_2897 PF00672 HAMP domain UNDKW_2902 PF01207 Dihydrouridine synthase (Dus) UNDKW_2903 PF00589 Phage integrase family UNDKW_2924 PF16198 tRNA pseudouridylate synthase B C-terminal domain UNDKW_2924 PF01509 TruB family pseudouridylate synthase (N terminal domain) UNDKW_2924 PF09157 Pseudouridine synthase II TruB, C-terminal UNDKW_2925 PF02033 Ribosome-binding factor A UNDKW_2926 PF00009 Elongation factor Tu GTP binding domain UNDKW_2926 PF11987 Translation-initiation factor 2 UNDKW_2926 PF08364 Bacterial translation initiation factor IF-2 associated region UNDKW_2926 PF04760 Translation initiation factor IF-2, N-terminal region UNDKW_2927 PF13184 NusA-like KH domain UNDKW_2927 PF08529 NusA N-terminal domain UNDKW_2928 PF17384 RimP C-terminal SH3 domain UNDKW_2928 PF02576 RimP N-terminal domain UNDKW_2929 PF00849 RNA pseudouridylate synthase UNDKW_2929 PF01479 S4 domain UNDKW_2930 PF04079 Segregation and condensation complex subunit ScpB UNDKW_2933 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2933 PF02203 Tar ligand binding domain homologue UNDKW_2933 PF00672 HAMP domain UNDKW_2935 PF00909 Ammonium Transporter Family UNDKW_2936 PF03588 Leucyl/phenylalanyl-tRNA protein transferase UNDKW_2937 PF04376 Arginine-tRNA-protein transferase, N terminus UNDKW_2937 PF04377 Arginine-tRNA-protein transferase, C terminus UNDKW_2938 PF01180 Dihydroorotate dehydrogenase UNDKW_2939 PF00248 Aldo/keto reductase family UNDKW_2941 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UNDKW_2942 PF05360 yiaA/B two helix domain UNDKW_2945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UNDKW_2946 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UNDKW_2947 PF01925 Sulfite exporter TauE/SafE UNDKW_2948 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UNDKW_2948 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UNDKW_2950 PF01507 Phosphoadenosine phosphosulfate reductase family UNDKW_2951 PF01507 Phosphoadenosine phosphosulfate reductase family UNDKW_2952 PF00009 Elongation factor Tu GTP binding domain UNDKW_2953 PF14824 Sirohaem biosynthesis protein central UNDKW_2953 PF10414 Sirohaem synthase dimerisation region UNDKW_2953 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UNDKW_2957 PF03739 Lipopolysaccharide export system permease LptF/LptG UNDKW_2958 PF02789 Cytosol aminopeptidase family, N-terminal domain UNDKW_2958 PF00883 Cytosol aminopeptidase family, catalytic domain UNDKW_2960 PF03372 Endonuclease/Exonuclease/phosphatase family UNDKW_2961 PF02203 Tar ligand binding domain homologue UNDKW_2961 PF00672 HAMP domain UNDKW_2961 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2964 PF00005 ABC transporter UNDKW_2964 PF00664 ABC transporter transmembrane region UNDKW_2965 PF02875 Mur ligase family, glutamate ligase domain UNDKW_2965 PF08245 Mur ligase middle domain UNDKW_2965 PF08443 RimK-like ATP-grasp domain UNDKW_2966 PF08245 Mur ligase middle domain UNDKW_2966 PF08443 RimK-like ATP-grasp domain UNDKW_2966 PF02875 Mur ligase family, glutamate ligase domain UNDKW_2968 PF01965 DJ-1/PfpI family UNDKW_2969 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_2971 PF00271 Helicase conserved C-terminal domain UNDKW_2971 PF04851 Type III restriction enzyme, res subunit UNDKW_2971 PF02151 UvrB/uvrC motif UNDKW_2971 PF12344 Ultra-violet resistance protein B UNDKW_2971 PF17757 UvrB interaction domain UNDKW_2972 PF00155 Aminotransferase class I and II UNDKW_2973 PF01292 Prokaryotic cytochrome b561 UNDKW_2975 PF18331 PKHD-type hydroxylase C-terminal domain UNDKW_2975 PF13640 2OG-Fe(II) oxygenase superfamily UNDKW_2976 PF01070 FMN-dependent dehydrogenase UNDKW_2977 PF07715 TonB-dependent Receptor Plug Domain UNDKW_2977 PF00593 TonB dependent receptor UNDKW_2978 PF00873 AcrB/AcrD/AcrF family UNDKW_2980 PF02321 Outer membrane efflux protein UNDKW_2981 PF00440 Bacterial regulatory proteins, tetR family UNDKW_2982 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_2982 PF02203 Tar ligand binding domain homologue UNDKW_2982 PF00672 HAMP domain UNDKW_2984 PF00216 Bacterial DNA-binding protein UNDKW_2985 PF03484 tRNA synthetase B5 domain UNDKW_2985 PF01588 Putative tRNA binding domain UNDKW_2985 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain UNDKW_2985 PF03483 B3/4 domain UNDKW_2985 PF03147 Ferredoxin-fold anticodon binding domain UNDKW_2986 PF01409 tRNA synthetases class II core domain (F) UNDKW_2986 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain UNDKW_2987 PF00453 Ribosomal protein L20 UNDKW_2988 PF01632 Ribosomal protein L35 UNDKW_2989 PF00707 Translation initiation factor IF-3, C-terminal domain UNDKW_2989 PF05198 Translation initiation factor IF-3, N-terminal domain UNDKW_2990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UNDKW_2990 PF02824 TGS domain UNDKW_2990 PF03129 Anticodon binding domain UNDKW_2990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UNDKW_2991 PF01545 Cation efflux family UNDKW_2993 PF04607 Region found in RelA / SpoT proteins UNDKW_2993 PF02824 TGS domain UNDKW_2993 PF13291 ACT domain UNDKW_2994 PF01042 Endoribonuclease L-PSP UNDKW_2996 PF00106 short chain dehydrogenase UNDKW_2998 PF01144 Coenzyme A transferase UNDKW_2999 PF01144 Coenzyme A transferase UNDKW_3000 PF00196 Bacterial regulatory proteins, luxR family UNDKW_3000 PF00072 Response regulator receiver domain UNDKW_3004 PF00293 NUDIX domain UNDKW_3006 PF00361 Proton-conducting membrane transporter UNDKW_3007 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus UNDKW_3007 PF00361 Proton-conducting membrane transporter UNDKW_3008 PF00361 Proton-conducting membrane transporter UNDKW_3008 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UNDKW_3009 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L UNDKW_3010 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 UNDKW_3011 PF12838 4Fe-4S dicluster domain UNDKW_3012 PF00146 NADH dehydrogenase UNDKW_3013 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal UNDKW_3013 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region UNDKW_3013 PF00384 Molybdopterin oxidoreductase UNDKW_3014 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit UNDKW_3014 PF10531 SLBB domain UNDKW_3014 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region UNDKW_3016 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit UNDKW_3017 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit UNDKW_3018 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit UNDKW_3019 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 UNDKW_3020 PF03840 Preprotein translocase SecG subunit UNDKW_3021 PF00121 Triosephosphate isomerase UNDKW_3022 PF00107 Zinc-binding dehydrogenase UNDKW_3022 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_3023 PF00575 S1 RNA binding domain UNDKW_3023 PF03725 3' exoribonuclease family, domain 2 UNDKW_3023 PF01138 3' exoribonuclease family, domain 1 UNDKW_3023 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain UNDKW_3023 PF00013 KH domain UNDKW_3024 PF00312 Ribosomal protein S15 UNDKW_3025 PF08502 LeuA allosteric (dimerisation) domain UNDKW_3025 PF00682 HMGL-like UNDKW_3026 PF01066 CDP-alcohol phosphatidyltransferase UNDKW_3028 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain UNDKW_3028 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain UNDKW_3029 PF10369 Small subunit of acetolactate synthase UNDKW_3030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UNDKW_3030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UNDKW_3030 PF00205 Thiamine pyrophosphate enzyme, central domain UNDKW_3032 PF04542 Sigma-70 region 2 UNDKW_3032 PF08281 Sigma-70, region 4 UNDKW_3036 PF00440 Bacterial regulatory proteins, tetR family UNDKW_3036 PF08361 MAATS-type transcriptional repressor, C-terminal region UNDKW_3037 PF03641 Possible lysine decarboxylase UNDKW_3040 PF02616 Segregation and condensation protein ScpA UNDKW_3041 PF02569 Pantoate-beta-alanine ligase UNDKW_3042 PF01497 Periplasmic binding protein UNDKW_3043 PF00892 EamA-like transporter family UNDKW_3046 PF02541 Ppx/GppA phosphatase family UNDKW_3049 PF00893 Small Multidrug Resistance protein UNDKW_3050 PF16331 TolA binding protein trimerisation UNDKW_3050 PF13525 Outer membrane lipoprotein UNDKW_3051 PF00691 OmpA family UNDKW_3052 PF07676 WD40-like Beta Propeller Repeat UNDKW_3052 PF04052 TolB amino-terminal domain UNDKW_3055 PF01292 Prokaryotic cytochrome b561 UNDKW_3064 PF00892 EamA-like transporter family UNDKW_3066 PF00075 RNase H UNDKW_3068 PF00753 Metallo-beta-lactamase superfamily UNDKW_3068 PF16123 Hydroxyacylglutathione hydrolase C-terminus UNDKW_3070 PF09285 Elongation factor P, C-terminal UNDKW_3070 PF08207 Elongation factor P (EF-P) KOW-like domain UNDKW_3070 PF01132 Elongation factor P (EF-P) OB domain UNDKW_3072 PF03180 NLPA lipoprotein UNDKW_3073 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3074 PF09383 NIL domain UNDKW_3074 PF00005 ABC transporter UNDKW_3078 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_3083 PF00749 tRNA synthetases class I (E and Q), catalytic domain UNDKW_3084 PF00849 RNA pseudouridylate synthase UNDKW_3085 PF01872 RibD C-terminal domain UNDKW_3085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UNDKW_3086 PF10609 NUBPL iron-transfer P-loop NTPase UNDKW_3096 PF02836 Glycosyl hydrolases family 2, TIM barrel domain UNDKW_3096 PF00703 Glycosyl hydrolases family 2 UNDKW_3096 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 UNDKW_3096 PF16355 Domain of unknown function (DUF4982) UNDKW_3096 PF02837 Glycosyl hydrolases family 2, sugar binding domain UNDKW_3097 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UNDKW_3097 PF13378 Enolase C-terminal domain-like UNDKW_3101 PF01588 Putative tRNA binding domain UNDKW_3101 PF09334 tRNA synthetases class I (M) UNDKW_3101 PF08264 Anticodon-binding domain of tRNA UNDKW_3103 PF01321 Creatinase/Prolidase N-terminal domain UNDKW_3103 PF00557 Metallopeptidase family M24 UNDKW_3104 PF00144 Beta-lactamase UNDKW_3105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_3105 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_3105 PF00989 PAS fold UNDKW_3105 PF11808 Phosphate regulon sensor protein PhoR UNDKW_3106 PF00072 Response regulator receiver domain UNDKW_3106 PF00486 Transcriptional regulatory protein, C terminal UNDKW_3107 PF01895 PhoU domain UNDKW_3108 PF00005 ABC transporter UNDKW_3109 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3110 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3111 PF12849 PBP superfamily domain UNDKW_3112 PF02503 Polyphosphate kinase middle domain UNDKW_3112 PF13090 Polyphosphate kinase C-terminal domain 2 UNDKW_3112 PF17941 Polyphosphate kinase C-terminal domain 1 UNDKW_3112 PF13089 Polyphosphate kinase N-terminal domain UNDKW_3115 PF00892 EamA-like transporter family UNDKW_3119 PF12849 PBP superfamily domain UNDKW_3120 PF03306 Alpha-acetolactate decarboxylase UNDKW_3124 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_3124 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UNDKW_3124 PF00034 Cytochrome c UNDKW_3126 PF04546 Sigma-70, non-essential region UNDKW_3126 PF04545 Sigma-70, region 4 UNDKW_3126 PF04542 Sigma-70 region 2 UNDKW_3126 PF04539 Sigma-70 region 3 UNDKW_3126 PF03979 Sigma-70 factor, region 1.1 UNDKW_3126 PF00140 Sigma-70 factor, region 1.2 UNDKW_3128 PF04973 Nicotinamide mononucleotide transporter UNDKW_3129 PF00114 Pilin (bacterial filament) UNDKW_3129 PF07963 Prokaryotic N-terminal methylation motif UNDKW_3130 PF00593 TonB dependent receptor UNDKW_3130 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_3134 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_3134 PF00672 HAMP domain UNDKW_3135 PF00072 Response regulator receiver domain UNDKW_3135 PF00486 Transcriptional regulatory protein, C terminal UNDKW_3149 PF13840 ACT domain UNDKW_3149 PF01842 ACT domain UNDKW_3149 PF00696 Amino acid kinase family UNDKW_3152 PF00230 Major intrinsic protein UNDKW_3153 PF01274 Malate synthase UNDKW_3155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3155 PF03466 LysR substrate binding domain UNDKW_3156 PF00672 HAMP domain UNDKW_3156 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3156 PF02203 Tar ligand binding domain homologue UNDKW_3157 PF00313 'Cold-shock' DNA-binding domain UNDKW_3159 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_3160 PF03061 Thioesterase superfamily UNDKW_3161 PF00108 Thiolase, N-terminal domain UNDKW_3161 PF02803 Thiolase, C-terminal domain UNDKW_3162 PF00108 Thiolase, N-terminal domain UNDKW_3162 PF02803 Thiolase, C-terminal domain UNDKW_3163 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_3163 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_3163 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_3164 PF10996 Beta-Casp domain UNDKW_3164 PF00753 Metallo-beta-lactamase superfamily UNDKW_3164 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain UNDKW_3166 PF09587 Bacterial capsule synthesis protein PGA_cap UNDKW_3172 PF03466 LysR substrate binding domain UNDKW_3172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3173 PF01734 Patatin-like phospholipase UNDKW_3176 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3176 PF00672 HAMP domain UNDKW_3176 PF02203 Tar ligand binding domain homologue UNDKW_3180 PF00501 AMP-binding enzyme UNDKW_3180 PF16177 Acetyl-coenzyme A synthetase N-terminus UNDKW_3180 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3181 PF04303 PrpF protein UNDKW_3182 PF00694 Aconitase C-terminal domain UNDKW_3182 PF00330 Aconitase family (aconitate hydratase) UNDKW_3184 PF00285 Citrate synthase, C-terminal domain UNDKW_3186 PF02954 Bacterial regulatory protein, Fis family UNDKW_3186 PF06506 Propionate catabolism activator UNDKW_3186 PF00158 Sigma-54 interaction domain UNDKW_3187 PF00158 Sigma-54 interaction domain UNDKW_3187 PF06506 Propionate catabolism activator UNDKW_3187 PF02954 Bacterial regulatory protein, Fis family UNDKW_3190 PF00563 EAL domain UNDKW_3190 PF00360 Phytochrome region UNDKW_3190 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3190 PF01590 GAF domain UNDKW_3192 PF00005 ABC transporter UNDKW_3193 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3194 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3195 PF03606 C4-dicarboxylate anaerobic carrier UNDKW_3198 PF01418 Helix-turn-helix domain, rpiR family UNDKW_3198 PF01380 SIS domain UNDKW_3199 PF00593 TonB dependent receptor UNDKW_3199 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3200 PF03575 Peptidase family S51 UNDKW_3201 PF02203 Tar ligand binding domain homologue UNDKW_3201 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3201 PF00672 HAMP domain UNDKW_3205 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3205 PF03707 Bacterial signalling protein N terminal repeat UNDKW_3205 PF00563 EAL domain UNDKW_3207 PF02347 Glycine cleavage system P-protein UNDKW_3208 PF01597 Glycine cleavage H-protein UNDKW_3209 PF08669 Glycine cleavage T-protein C-terminal barrel domain UNDKW_3209 PF01571 Aminomethyltransferase folate-binding domain UNDKW_3210 PF00544 Pectate lyase UNDKW_3211 PF01804 Penicillin amidase UNDKW_3212 PF00005 ABC transporter UNDKW_3212 PF00664 ABC transporter transmembrane region UNDKW_3213 PF08361 MAATS-type transcriptional repressor, C-terminal region UNDKW_3213 PF00440 Bacterial regulatory proteins, tetR family UNDKW_3215 PF07969 Amidohydrolase family UNDKW_3216 PF01464 Transglycosylase SLT domain UNDKW_3217 PF03922 OmpW family UNDKW_3219 PF00873 AcrB/AcrD/AcrF family UNDKW_3220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_3224 PF05114 Protein of unknown function (DUF692) UNDKW_3228 PF01814 Hemerythrin HHE cation binding domain UNDKW_3230 PF03205 Molybdopterin guanine dinucleotide synthesis protein B UNDKW_3237 PF00311 Phosphoenolpyruvate carboxylase UNDKW_3238 PF00342 Phosphoglucose isomerase UNDKW_3239 PF01081 KDPG and KHG aldolase UNDKW_3240 PF00920 Dehydratase family UNDKW_3241 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain UNDKW_3241 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain UNDKW_3242 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase UNDKW_3243 PF01380 SIS domain UNDKW_3243 PF01418 Helix-turn-helix domain, rpiR family UNDKW_3245 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3245 PF00593 TonB dependent receptor UNDKW_3248 PF00925 GTP cyclohydrolase II UNDKW_3249 PF00920 Dehydratase family UNDKW_3250 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain UNDKW_3251 PF17432 Domain of unknown function (DUF3458_C) ARM repeats UNDKW_3251 PF11940 Domain of unknown function (DUF3458) Ig-like fold UNDKW_3251 PF01433 Peptidase family M1 domain UNDKW_3254 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_3254 PF00107 Zinc-binding dehydrogenase UNDKW_3255 PF00892 EamA-like transporter family UNDKW_3256 PF05872 Bacterial protein of unknown function (DUF853) UNDKW_3257 PF01709 Transcriptional regulator UNDKW_3258 PF02844 Phosphoribosylglycinamide synthetase, N domain UNDKW_3258 PF02843 Phosphoribosylglycinamide synthetase, C domain UNDKW_3258 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain UNDKW_3259 PF01218 Coproporphyrinogen III oxidase UNDKW_3260 PF01467 Cytidylyltransferase-like UNDKW_3262 PF02590 Predicted SPOUT methyltransferase UNDKW_3263 PF02545 Maf-like protein UNDKW_3264 PF10150 Ribonuclease E/G family UNDKW_3264 PF00575 S1 RNA binding domain UNDKW_3267 PF00871 Acetokinase family UNDKW_3268 PF01515 Phosphate acetyl/butaryl transferase UNDKW_3271 PF00005 ABC transporter UNDKW_3272 PF00005 ABC transporter UNDKW_3273 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_3275 PF00561 alpha/beta hydrolase fold UNDKW_3275 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus UNDKW_3277 PF00563 EAL domain UNDKW_3277 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3277 PF05231 MASE1 UNDKW_3277 PF08447 PAS fold UNDKW_3277 PF08448 PAS fold UNDKW_3277 PF13426 PAS domain UNDKW_3279 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UNDKW_3281 PF00005 ABC transporter UNDKW_3281 PF00664 ABC transporter transmembrane region UNDKW_3283 PF07733 Bacterial DNA polymerase III alpha NTPase domain UNDKW_3283 PF01336 OB-fold nucleic acid binding domain UNDKW_3283 PF14579 Helix-hairpin-helix motif UNDKW_3283 PF02811 PHP domain UNDKW_3283 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UNDKW_3284 PF00593 TonB dependent receptor UNDKW_3284 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3286 PF08448 PAS fold UNDKW_3286 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3287 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain UNDKW_3287 PF00749 tRNA synthetases class I (E and Q), catalytic domain UNDKW_3291 PF00144 Beta-lactamase UNDKW_3292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3292 PF03466 LysR substrate binding domain UNDKW_3293 PF07286 Protein of unknown function (DUF1445) UNDKW_3295 PF00011 Hsp20/alpha crystallin family UNDKW_3296 PF03692 Putative zinc- or iron-chelating domain UNDKW_3303 PF01878 EVE domain UNDKW_3307 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_3308 PF11412 Disulphide bond corrector protein DsbC UNDKW_3308 PF02683 Cytochrome C biogenesis protein transmembrane region UNDKW_3311 PF00578 AhpC/TSA family UNDKW_3314 PF08281 Sigma-70, region 4 UNDKW_3314 PF04542 Sigma-70 region 2 UNDKW_3316 PF00082 Subtilase family UNDKW_3319 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term UNDKW_3319 PF12833 Helix-turn-helix domain UNDKW_3321 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_3321 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_3323 PF13302 Acetyltransferase (GNAT) domain UNDKW_3333 PF07694 5TMR of 5TMR-LYT UNDKW_3333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_3333 PF13492 GAF domain UNDKW_3333 PF06580 Histidine kinase UNDKW_3334 PF00072 Response regulator receiver domain UNDKW_3334 PF04397 LytTr DNA-binding domain UNDKW_3338 PF00672 HAMP domain UNDKW_3338 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3338 PF02203 Tar ligand binding domain homologue UNDKW_3339 PF00005 ABC transporter UNDKW_3340 PF00005 ABC transporter UNDKW_3340 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_3341 PF02653 Branched-chain amino acid transport system / permease component UNDKW_3342 PF02653 Branched-chain amino acid transport system / permease component UNDKW_3343 PF13458 Periplasmic binding protein UNDKW_3345 PF01968 Hydantoinase/oxoprolinase UNDKW_3345 PF05378 Hydantoinase/oxoprolinase N-terminal region UNDKW_3346 PF13609 Gram-negative porin UNDKW_3348 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UNDKW_3349 PF01047 MarR family UNDKW_3350 PF02566 OsmC-like protein UNDKW_3353 PF02630 SCO1/SenC UNDKW_3360 PF03412 Peptidase C39 family UNDKW_3360 PF00005 ABC transporter UNDKW_3360 PF00664 ABC transporter transmembrane region UNDKW_3372 PF03186 CobD/Cbib protein UNDKW_3372 PF17113 Regulatory signalling modulator protein AmpE UNDKW_3373 PF00293 NUDIX domain UNDKW_3374 PF01245 Ribosomal protein L19 UNDKW_3375 PF01746 tRNA (Guanine-1)-methyltransferase UNDKW_3376 PF05239 PRC-barrel domain UNDKW_3376 PF01782 RimM N-terminal domain UNDKW_3377 PF00886 Ribosomal protein S16 UNDKW_3379 PF00480 ROK family UNDKW_3379 PF01047 MarR family UNDKW_3381 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_3383 PF00005 ABC transporter UNDKW_3383 PF08402 TOBE domain UNDKW_3386 PF12806 Acetyl-CoA dehydrogenase C-terminal like UNDKW_3386 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_3386 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_3386 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_3387 PF00766 Electron transfer flavoprotein FAD-binding domain UNDKW_3387 PF01012 Electron transfer flavoprotein domain UNDKW_3388 PF01012 Electron transfer flavoprotein domain UNDKW_3389 PF01206 Sulfurtransferase TusA UNDKW_3391 PF00583 Acetyltransferase (GNAT) family UNDKW_3392 PF01411 tRNA synthetases class II (A) UNDKW_3392 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UNDKW_3392 PF02272 DHHA1 domain UNDKW_3397 PF00005 ABC transporter UNDKW_3398 PF07739 TipAS antibiotic-recognition domain UNDKW_3398 PF13411 MerR HTH family regulatory protein UNDKW_3399 PF03009 Glycerophosphoryl diester phosphodiesterase family UNDKW_3400 PF02515 CoA-transferase family III UNDKW_3401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_3401 PF07694 5TMR of 5TMR-LYT UNDKW_3401 PF06580 Histidine kinase UNDKW_3402 PF00072 Response regulator receiver domain UNDKW_3402 PF04397 LytTr DNA-binding domain UNDKW_3403 PF13673 Acetyltransferase (GNAT) domain UNDKW_3405 PF01431 Peptidase family M13 UNDKW_3405 PF05649 Peptidase family M13 UNDKW_3408 PF00501 AMP-binding enzyme UNDKW_3408 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3409 PF01230 HIT domain UNDKW_3410 PF00668 Condensation domain UNDKW_3410 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3410 PF00550 Phosphopantetheine attachment site UNDKW_3410 PF00975 Thioesterase domain UNDKW_3410 PF00501 AMP-binding enzyme UNDKW_3414 PF08281 Sigma-70, region 4 UNDKW_3414 PF04542 Sigma-70 region 2 UNDKW_3416 PF06983 3-demethylubiquinone-9 3-methyltransferase UNDKW_3417 PF03795 YCII-related domain UNDKW_3422 PF03358 NADPH-dependent FMN reductase UNDKW_3423 PF02678 Pirin UNDKW_3423 PF17954 Quercetinase C-terminal cupin domain UNDKW_3424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3424 PF03466 LysR substrate binding domain UNDKW_3425 PF00749 tRNA synthetases class I (E and Q), catalytic domain UNDKW_3428 PF09286 Pro-kumamolisin, activation domain UNDKW_3428 PF00082 Subtilase family UNDKW_3429 PF07732 Multicopper oxidase UNDKW_3429 PF07731 Multicopper oxidase UNDKW_3432 PF01810 LysE type translocator UNDKW_3434 PF00072 Response regulator receiver domain UNDKW_3434 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3436 PF01467 Cytidylyltransferase-like UNDKW_3437 PF01121 Dephospho-CoA kinase UNDKW_3438 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_3438 PF00672 HAMP domain UNDKW_3438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_3439 PF00072 Response regulator receiver domain UNDKW_3439 PF00486 Transcriptional regulatory protein, C terminal UNDKW_3443 PF04185 Phosphoesterase family UNDKW_3443 PF05506 Domain of unknown function (DUF756) UNDKW_3444 PF04185 Phosphoesterase family UNDKW_3444 PF05506 Domain of unknown function (DUF756) UNDKW_3447 PF00166 Chaperonin 10 Kd subunit UNDKW_3448 PF00118 TCP-1/cpn60 chaperonin family UNDKW_3451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3451 PF03466 LysR substrate binding domain UNDKW_3455 PF13186 Iron-sulfur cluster-binding domain UNDKW_3455 PF04055 Radical SAM superfamily UNDKW_3457 PF01790 Prolipoprotein diacylglyceryl transferase UNDKW_3459 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease UNDKW_3459 PF01694 Rhomboid family UNDKW_3462 PF05544 Proline racemase UNDKW_3464 PF12833 Helix-turn-helix domain UNDKW_3464 PF01965 DJ-1/PfpI family UNDKW_3465 PF07729 FCD domain UNDKW_3465 PF00392 Bacterial regulatory proteins, gntR family UNDKW_3468 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_3469 PF01926 50S ribosome-binding GTPase UNDKW_3482 PF00850 Histone deacetylase domain UNDKW_3483 PF17863 AAA lid domain UNDKW_3483 PF07726 ATPase family associated with various cellular activities (AAA) UNDKW_3485 PF01841 Transglutaminase-like superfamily UNDKW_3485 PF11992 Domain of unknown function (DUF3488) UNDKW_3485 PF13559 Domain of unknown function (DUF4129) UNDKW_3486 PF13406 Transglycosylase SLT domain UNDKW_3488 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_3490 PF03466 LysR substrate binding domain UNDKW_3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3492 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase UNDKW_3493 PF00294 pfkB family carbohydrate kinase UNDKW_3494 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UNDKW_3494 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UNDKW_3494 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UNDKW_3495 PF18073 Rubredoxin metal binding domain UNDKW_3497 PF00216 Bacterial DNA-binding protein UNDKW_3498 PF00575 S1 RNA binding domain UNDKW_3499 PF02224 Cytidylate kinase UNDKW_3500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UNDKW_3501 PF01842 ACT domain UNDKW_3501 PF02153 Prephenate dehydrogenase UNDKW_3502 PF00800 Prephenate dehydratase UNDKW_3502 PF01842 ACT domain UNDKW_3502 PF01817 Chorismate mutase type II UNDKW_3503 PF00266 Aminotransferase class-V UNDKW_3504 PF03989 DNA gyrase C-terminal domain, beta-propeller UNDKW_3504 PF00521 DNA gyrase/topoisomerase IV, subunit A UNDKW_3505 PF00691 OmpA family UNDKW_3505 PF01389 OmpA-like transmembrane domain UNDKW_3506 PF00691 OmpA family UNDKW_3508 PF13419 Haloacid dehalogenase-like hydrolase UNDKW_3510 PF11855 Protein of unknown function (DUF3375) UNDKW_3519 PF00356 Bacterial regulatory proteins, lacI family UNDKW_3519 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UNDKW_3521 PF13419 Haloacid dehalogenase-like hydrolase UNDKW_3522 PF03632 Glycosyl hydrolase family 65 central catalytic domain UNDKW_3522 PF03636 Glycosyl hydrolase family 65, N-terminal domain UNDKW_3522 PF03633 Glycosyl hydrolase family 65, C-terminal domain UNDKW_3523 PF06276 Ferric iron reductase FhuF-like transporter UNDKW_3523 PF04183 IucA / IucC family UNDKW_3525 PF04183 IucA / IucC family UNDKW_3525 PF06276 Ferric iron reductase FhuF-like transporter UNDKW_3526 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3526 PF00593 TonB dependent receptor UNDKW_3528 PF00356 Bacterial regulatory proteins, lacI family UNDKW_3530 PF00975 Thioesterase domain UNDKW_3531 PF01648 4'-phosphopantetheinyl transferase superfamily UNDKW_3533 PF01740 STAS domain UNDKW_3534 PF00005 ABC transporter UNDKW_3534 PF00664 ABC transporter transmembrane region UNDKW_3535 PF00550 Phosphopantetheine attachment site UNDKW_3536 PF00501 AMP-binding enzyme UNDKW_3537 PF00296 Luciferase-like monooxygenase UNDKW_3540 PF00501 AMP-binding enzyme UNDKW_3540 PF07993 Male sterility protein UNDKW_3540 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3540 PF00668 Condensation domain UNDKW_3540 PF00550 Phosphopantetheine attachment site UNDKW_3541 PF00501 AMP-binding enzyme UNDKW_3541 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3541 PF00668 Condensation domain UNDKW_3541 PF00550 Phosphopantetheine attachment site UNDKW_3541 PF00975 Thioesterase domain UNDKW_3543 PF00668 Condensation domain UNDKW_3543 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_3543 PF00202 Aminotransferase class-III UNDKW_3543 PF00550 Phosphopantetheine attachment site UNDKW_3543 PF00501 AMP-binding enzyme UNDKW_3543 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_3543 PF13193 AMP-binding enzyme C-terminal domain UNDKW_3543 PF16197 Ketoacyl-synthetase C-terminal extension UNDKW_3545 PF13581 Histidine kinase-like ATPase domain UNDKW_3546 PF07228 Stage II sporulation protein E (SpoIIE) UNDKW_3546 PF00672 HAMP domain UNDKW_3547 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_3551 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_3552 PF01799 [2Fe-2S] binding domain UNDKW_3552 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_3554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3554 PF03466 LysR substrate binding domain UNDKW_3556 PF03466 LysR substrate binding domain UNDKW_3556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3557 PF00753 Metallo-beta-lactamase superfamily UNDKW_3557 PF14864 Alkyl sulfatase C-terminal UNDKW_3557 PF14863 Alkyl sulfatase dimerisation UNDKW_3563 PF00375 Sodium:dicarboxylate symporter family UNDKW_3564 PF01546 Peptidase family M20/M25/M40 UNDKW_3564 PF07687 Peptidase dimerisation domain UNDKW_3565 PF07687 Peptidase dimerisation domain UNDKW_3565 PF01546 Peptidase family M20/M25/M40 UNDKW_3568 PF01136 Peptidase family U32 UNDKW_3568 PF12392 Collagenase UNDKW_3569 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family UNDKW_3577 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UNDKW_3577 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UNDKW_3578 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3578 PF02203 Tar ligand binding domain homologue UNDKW_3578 PF00672 HAMP domain UNDKW_3581 PF02673 Bacitracin resistance protein BacA UNDKW_3582 PF09382 RQC domain UNDKW_3582 PF16124 RecQ zinc-binding UNDKW_3582 PF00570 HRDC domain UNDKW_3582 PF00270 DEAD/DEAH box helicase UNDKW_3582 PF00271 Helicase conserved C-terminal domain UNDKW_3590 PF08279 HTH domain UNDKW_3590 PF13280 WYL domain UNDKW_3591 PF00356 Bacterial regulatory proteins, lacI family UNDKW_3593 PF00128 Alpha amylase, catalytic domain UNDKW_3597 PF02872 5'-nucleotidase, C-terminal domain UNDKW_3597 PF00149 Calcineurin-like phosphoesterase UNDKW_3602 PF00034 Cytochrome c UNDKW_3603 PF00174 Oxidoreductase molybdopterin binding domain UNDKW_3605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3605 PF03466 LysR substrate binding domain UNDKW_3609 PF08818 Domain of unknown function (DU1801) UNDKW_3615 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_3620 PF00893 Small Multidrug Resistance protein UNDKW_3626 PF00005 ABC transporter UNDKW_3629 PF13411 MerR HTH family regulatory protein UNDKW_3629 PF07739 TipAS antibiotic-recognition domain UNDKW_3631 PF00176 SNF2 family N-terminal domain UNDKW_3631 PF00271 Helicase conserved C-terminal domain UNDKW_3631 PF12419 SNF2 Helicase protein UNDKW_3632 PF03707 Bacterial signalling protein N terminal repeat UNDKW_3632 PF00563 EAL domain UNDKW_3632 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3634 PF02390 Putative methyltransferase UNDKW_3663 PF04466 Phage terminase large subunit UNDKW_3663 PF17288 Terminase RNAseH like domain UNDKW_3671 PF07715 TonB-dependent Receptor Plug Domain UNDKW_3671 PF00593 TonB dependent receptor UNDKW_3672 PF05171 Haemin-degrading HemS.ChuX domain UNDKW_3673 PF01497 Periplasmic binding protein UNDKW_3674 PF01032 FecCD transport family UNDKW_3675 PF00005 ABC transporter UNDKW_3682 PF03466 LysR substrate binding domain UNDKW_3682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3683 PF01717 Cobalamin-independent synthase, Catalytic domain UNDKW_3683 PF08267 Cobalamin-independent synthase, N-terminal domain UNDKW_3685 PF07804 HipA-like C-terminal domain UNDKW_3685 PF13657 HipA N-terminal domain UNDKW_3686 PF01381 Helix-turn-helix UNDKW_3686 PF00717 Peptidase S24-like UNDKW_3687 PF10531 SLBB domain UNDKW_3687 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit UNDKW_3687 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region UNDKW_3689 PF01568 Molydopterin dinucleotide binding domain UNDKW_3689 PF00384 Molybdopterin oxidoreductase UNDKW_3689 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UNDKW_3694 PF00171 Aldehyde dehydrogenase family UNDKW_3695 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_3695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_3695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_3696 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_3697 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_3697 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UNDKW_3697 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UNDKW_3698 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UNDKW_3698 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UNDKW_3701 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_3701 PF05231 MASE1 UNDKW_3701 PF08447 PAS fold UNDKW_3701 PF00563 EAL domain UNDKW_3701 PF08448 PAS fold UNDKW_3701 PF13426 PAS domain UNDKW_3711 PF02417 Chromate transporter UNDKW_3712 PF09828 Chromate resistance exported protein UNDKW_3714 PF01209 ubiE/COQ5 methyltransferase family UNDKW_3715 PF00072 Response regulator receiver domain UNDKW_3715 PF00196 Bacterial regulatory proteins, luxR family UNDKW_3718 PF00672 HAMP domain UNDKW_3718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3718 PF02203 Tar ligand binding domain homologue UNDKW_3719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3719 PF02203 Tar ligand binding domain homologue UNDKW_3719 PF00672 HAMP domain UNDKW_3720 PF01661 Macro domain UNDKW_3725 PF12697 Alpha/beta hydrolase family UNDKW_3726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3726 PF00672 HAMP domain UNDKW_3726 PF02203 Tar ligand binding domain homologue UNDKW_3731 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_3733 PF01584 CheW-like domain UNDKW_3734 PF02203 Tar ligand binding domain homologue UNDKW_3734 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_3734 PF00672 HAMP domain UNDKW_3735 PF01979 Amidohydrolase family UNDKW_3738 PF01569 PAP2 superfamily UNDKW_3745 PF00795 Carbon-nitrogen hydrolase UNDKW_3746 PF00571 CBS domain UNDKW_3746 PF03471 Transporter associated domain UNDKW_3752 PF17655 Inward rectifier potassium channel C-terminal domain UNDKW_3752 PF07885 Ion channel UNDKW_3753 PF02130 Uncharacterized protein family UPF0054 UNDKW_3754 PF02562 PhoH-like protein UNDKW_3755 PF04055 Radical SAM superfamily UNDKW_3755 PF01938 TRAM domain UNDKW_3755 PF00919 Uncharacterized protein family UPF0004 UNDKW_3757 PF01613 Flavin reductase like domain UNDKW_3758 PF04193 PQ loop repeat UNDKW_3763 PF12833 Helix-turn-helix domain UNDKW_3764 PF01411 tRNA synthetases class II (A) UNDKW_3764 PF02272 DHHA1 domain UNDKW_3764 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UNDKW_3771 PF03466 LysR substrate binding domain UNDKW_3771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3772 PF07690 Major Facilitator Superfamily UNDKW_3785 PF02583 Metal-sensitive transcriptional repressor UNDKW_3791 PF03481 Putative GTP-binding controlling metal-binding UNDKW_3791 PF01300 Telomere recombination UNDKW_3792 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain UNDKW_3792 PF02222 ATP-grasp domain UNDKW_3793 PF00731 AIR carboxylase UNDKW_3794 PF01259 SAICAR synthetase UNDKW_3795 PF01116 Fructose-bisphosphate aldolase class-II UNDKW_3796 PF00224 Pyruvate kinase, barrel domain UNDKW_3796 PF02887 Pyruvate kinase, alpha/beta domain UNDKW_3797 PF00162 Phosphoglycerate kinase UNDKW_3804 PF00561 alpha/beta hydrolase fold UNDKW_3811 PF01734 Patatin-like phospholipase UNDKW_3818 PF01435 Peptidase family M48 UNDKW_3819 PF01967 MoaC family UNDKW_3824 PF00722 Glycosyl hydrolases family 16 UNDKW_3833 PF15864 Protein glycosylation ligase UNDKW_3833 PF11846 Virulence factor membrane-bound polymerase, C-terminal UNDKW_3833 PF04932 O-Antigen ligase UNDKW_3839 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UNDKW_3839 PF08548 Peptidase M10 serralysin C terminal UNDKW_3843 PF02321 Outer membrane efflux protein UNDKW_3844 PF00440 Bacterial regulatory proteins, tetR family UNDKW_3845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_3846 PF00873 AcrB/AcrD/AcrF family UNDKW_3847 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) UNDKW_3851 PF12146 Serine aminopeptidase, S33 UNDKW_3854 PF18029 Glyoxalase-like domain UNDKW_3855 PF05736 OprF membrane domain UNDKW_3855 PF00691 OmpA family UNDKW_3857 PF02417 Chromate transporter UNDKW_3858 PF02417 Chromate transporter UNDKW_3859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3859 PF03466 LysR substrate binding domain UNDKW_3862 PF00376 MerR family regulatory protein UNDKW_3862 PF09278 MerR, DNA binding UNDKW_3864 PF13460 NAD(P)H-binding UNDKW_3866 PF07690 Major Facilitator Superfamily UNDKW_3867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3867 PF03466 LysR substrate binding domain UNDKW_3868 PF00230 Major intrinsic protein UNDKW_3869 PF01451 Low molecular weight phosphotyrosine protein phosphatase UNDKW_3871 PF01022 Bacterial regulatory protein, arsR family UNDKW_3872 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_3890 PF14552 Tautomerase enzyme UNDKW_3892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_3892 PF03466 LysR substrate binding domain UNDKW_3900 PF04073 Aminoacyl-tRNA editing domain UNDKW_3901 PF01596 O-methyltransferase UNDKW_3907 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain UNDKW_3907 PF00326 Prolyl oligopeptidase family UNDKW_3912 PF13302 Acetyltransferase (GNAT) domain UNDKW_3916 PF01636 Phosphotransferase enzyme family UNDKW_3917 PF00144 Beta-lactamase UNDKW_3921 PF08281 Sigma-70, region 4 UNDKW_3921 PF04542 Sigma-70 region 2 UNDKW_3924 PF13520 Amino acid permease UNDKW_3925 PF06751 Ethanolamine ammonia lyase large subunit (EutB) UNDKW_3926 PF05985 Ethanolamine ammonia-lyase light chain (EutC) UNDKW_3930 PF03193 RsgA GTPase UNDKW_3937 PF01292 Prokaryotic cytochrome b561 UNDKW_3960 PF01381 Helix-turn-helix UNDKW_3963 PF04539 Sigma-70 region 3 UNDKW_3963 PF04542 Sigma-70 region 2 UNDKW_3963 PF04545 Sigma-70, region 4 UNDKW_3964 PF00813 FliP family UNDKW_3966 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UNDKW_3968 PF07559 Flagellar basal body protein FlaE UNDKW_3968 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_3968 PF00460 Flagella basal body rod protein UNDKW_3969 PF03963 Flagellar hook capping protein - N-terminal region UNDKW_3972 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UNDKW_3972 PF18269 T3SS EscN ATPase C-terminal domain UNDKW_3972 PF02874 ATP synthase alpha/beta family, beta-barrel domain UNDKW_3975 PF01514 Secretory protein of YscJ/FliF family UNDKW_3975 PF08345 Flagellar M-ring protein C-terminal UNDKW_3976 PF02049 Flagellar hook-basal body complex protein FliE UNDKW_3977 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_3977 PF00460 Flagella basal body rod protein UNDKW_3979 PF02119 Flagellar P-ring protein UNDKW_3980 PF02107 Flagellar L-ring protein UNDKW_3982 PF00460 Flagella basal body rod protein UNDKW_3982 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_3983 PF00460 Flagella basal body rod protein UNDKW_3983 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UNDKW_3984 PF00771 FHIPEP family UNDKW_3985 PF01312 FlhB HrpN YscU SpaS Family UNDKW_3986 PF01311 Bacterial export proteins, family 1 UNDKW_3987 PF01313 Bacterial export proteins, family 3 UNDKW_3989 PF03050 Transposase IS66 family UNDKW_3989 PF13817 IS66 C-terminal element UNDKW_3989 PF13007 Transposase C of IS166 homeodomain UNDKW_3989 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_3992 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_3992 PF03050 Transposase IS66 family UNDKW_3992 PF13817 IS66 C-terminal element UNDKW_3992 PF13007 Transposase C of IS166 homeodomain UNDKW_3997 PF13495 Phage integrase, N-terminal SAM-like domain UNDKW_3997 PF00589 Phage integrase family UNDKW_3998 PF01807 CHC2 zinc finger UNDKW_3998 PF08275 DNA primase catalytic core, N-terminal domain UNDKW_3999 PF01381 Helix-turn-helix UNDKW_4004 PF02796 Helix-turn-helix domain of resolvase UNDKW_4004 PF00239 Resolvase, N terminal domain UNDKW_4005 PF00239 Resolvase, N terminal domain UNDKW_4005 PF02796 Helix-turn-helix domain of resolvase UNDKW_4015 PF13495 Phage integrase, N-terminal SAM-like domain UNDKW_4015 PF00589 Phage integrase family UNDKW_4016 PF01807 CHC2 zinc finger UNDKW_4016 PF08275 DNA primase catalytic core, N-terminal domain UNDKW_4017 PF01381 Helix-turn-helix UNDKW_4022 PF02796 Helix-turn-helix domain of resolvase UNDKW_4022 PF00239 Resolvase, N terminal domain UNDKW_4023 PF02796 Helix-turn-helix domain of resolvase UNDKW_4023 PF00239 Resolvase, N terminal domain UNDKW_4049 PF01609 Transposase DDE domain UNDKW_4059 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_4060 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_4061 PF08889 WbqC-like protein family UNDKW_4073 PF00557 Metallopeptidase family M24 UNDKW_4076 PF00072 Response regulator receiver domain UNDKW_4077 PF00563 EAL domain UNDKW_4077 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4077 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4078 PF00360 Phytochrome region UNDKW_4078 PF08446 PAS fold UNDKW_4078 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4078 PF01590 GAF domain UNDKW_4079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4079 PF00989 PAS fold UNDKW_4079 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4087 PF05448 Acetyl xylan esterase (AXE1) UNDKW_4089 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4089 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4089 PF00563 EAL domain UNDKW_4090 PF03572 Peptidase family S41 UNDKW_4090 PF13180 PDZ domain UNDKW_4091 PF08447 PAS fold UNDKW_4091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4092 PF00679 Elongation factor G C-terminus UNDKW_4092 PF14492 Elongation Factor G, domain II UNDKW_4092 PF03764 Elongation factor G, domain IV UNDKW_4092 PF00009 Elongation factor Tu GTP binding domain UNDKW_4092 PF03144 Elongation factor Tu domain 2 UNDKW_4104 PF10503 Esterase PHB depolymerase UNDKW_4111 PF06719 AraC-type transcriptional regulator N-terminus UNDKW_4111 PF12833 Helix-turn-helix domain UNDKW_4112 PF01799 [2Fe-2S] binding domain UNDKW_4112 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_4113 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_4114 PF02625 XdhC and CoxI family UNDKW_4114 PF13478 XdhC Rossmann domain UNDKW_4116 PF00264 Common central domain of tyrosinase UNDKW_4118 PF09905 DNA-binding protein VF530 UNDKW_4124 PF00296 Luciferase-like monooxygenase UNDKW_4125 PF00296 Luciferase-like monooxygenase UNDKW_4128 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_4129 PF02203 Tar ligand binding domain homologue UNDKW_4129 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4129 PF00672 HAMP domain UNDKW_4130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4130 PF03466 LysR substrate binding domain UNDKW_4131 PF02515 CoA-transferase family III UNDKW_4132 PF08502 LeuA allosteric (dimerisation) domain UNDKW_4132 PF00682 HMGL-like UNDKW_4134 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_4135 PF00375 Sodium:dicarboxylate symporter family UNDKW_4136 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UNDKW_4136 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UNDKW_4137 PF02595 Glycerate kinase family UNDKW_4140 PF01301 Glycosyl hydrolases family 35 UNDKW_4143 PF00356 Bacterial regulatory proteins, lacI family UNDKW_4145 PF13185 GAF domain UNDKW_4145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4145 PF13492 GAF domain UNDKW_4145 PF07730 Histidine kinase UNDKW_4150 PF07969 Amidohydrolase family UNDKW_4151 PF00857 Isochorismatase family UNDKW_4152 PF06628 Catalase-related immune-responsive UNDKW_4152 PF00199 Catalase UNDKW_4154 PF00561 alpha/beta hydrolase fold UNDKW_4156 PF00196 Bacterial regulatory proteins, luxR family UNDKW_4156 PF00072 Response regulator receiver domain UNDKW_4158 PF13610 DDE domain UNDKW_4159 PF14497 Glutathione S-transferase, C-terminal domain UNDKW_4159 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_4161 PF04616 Glycosyl hydrolases family 43 UNDKW_4161 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain UNDKW_4162 PF06964 Alpha-L-arabinofuranosidase C-terminal domain UNDKW_4164 PF00356 Bacterial regulatory proteins, lacI family UNDKW_4166 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UNDKW_4166 PF13378 Enolase C-terminal domain-like UNDKW_4168 PF01263 Aldose 1-epimerase UNDKW_4169 PF12833 Helix-turn-helix domain UNDKW_4170 PF00933 Glycosyl hydrolase family 3 N terminal domain UNDKW_4170 PF14310 Fibronectin type III-like domain UNDKW_4170 PF01915 Glycosyl hydrolase family 3 C-terminal domain UNDKW_4171 PF02653 Branched-chain amino acid transport system / permease component UNDKW_4172 PF00005 ABC transporter UNDKW_4173 PF13407 Periplasmic binding protein domain UNDKW_4174 PF00920 Dehydratase family UNDKW_4178 PF00331 Glycosyl hydrolase family 10 UNDKW_4178 PF03426 Carbohydrate binding domain (family 15) UNDKW_4179 PF01229 Glycosyl hydrolases family 39 UNDKW_4180 PF00593 TonB dependent receptor UNDKW_4180 PF07715 TonB-dependent Receptor Plug Domain UNDKW_4182 PF00295 Glycosyl hydrolases family 28 UNDKW_4183 PF01609 Transposase DDE domain UNDKW_4190 PF03466 LysR substrate binding domain UNDKW_4190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4191 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_4191 PF16197 Ketoacyl-synthetase C-terminal extension UNDKW_4191 PF00550 Phosphopantetheine attachment site UNDKW_4191 PF08659 KR domain UNDKW_4191 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_4191 PF14765 Polyketide synthase dehydratase UNDKW_4191 PF00698 Acyl transferase domain UNDKW_4191 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_4195 PF01740 STAS domain UNDKW_4195 PF00916 Sulfate permease family UNDKW_4201 PF01627 Hpt domain UNDKW_4201 PF00072 Response regulator receiver domain UNDKW_4201 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4201 PF00672 HAMP domain UNDKW_4201 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_4201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4202 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4202 PF00072 Response regulator receiver domain UNDKW_4207 PF13458 Periplasmic binding protein UNDKW_4208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4208 PF03466 LysR substrate binding domain UNDKW_4212 PF01037 Lrp/AsnC ligand binding domain UNDKW_4213 PF07722 Peptidase C26 UNDKW_4214 PF01266 FAD dependent oxidoreductase UNDKW_4215 PF02423 Ornithine cyclodeaminase/mu-crystallin family UNDKW_4217 PF01810 LysE type translocator UNDKW_4223 PF00005 ABC transporter UNDKW_4223 PF13732 Domain of unknown function (DUF4162) UNDKW_4224 PF01678 Diaminopimelate epimerase UNDKW_4227 PF01336 OB-fold nucleic acid binding domain UNDKW_4227 PF00152 tRNA synthetases class II (D, K and N) UNDKW_4228 PF00144 Beta-lactamase UNDKW_4229 PF17151 Periplasmic sensor domain UNDKW_4229 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4235 PF00082 Subtilase family UNDKW_4235 PF09286 Pro-kumamolisin, activation domain UNDKW_4236 PF08448 PAS fold UNDKW_4236 PF08447 PAS fold UNDKW_4236 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4236 PF00563 EAL domain UNDKW_4238 PF01548 Transposase UNDKW_4238 PF02371 Transposase IS116/IS110/IS902 family UNDKW_4240 PF04403 Paraquat-inducible protein A UNDKW_4241 PF04403 Paraquat-inducible protein A UNDKW_4242 PF02470 MlaD protein UNDKW_4267 PF00436 Single-strand binding protein family UNDKW_4276 PF01548 Transposase UNDKW_4276 PF02371 Transposase IS116/IS110/IS902 family UNDKW_4281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4281 PF03466 LysR substrate binding domain UNDKW_4284 PF01565 FAD binding domain UNDKW_4284 PF08031 Berberine and berberine like UNDKW_4290 PF02203 Tar ligand binding domain homologue UNDKW_4290 PF00672 HAMP domain UNDKW_4290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4293 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_4294 PF01177 Asp/Glu/Hydantoin racemase UNDKW_4295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4295 PF03466 LysR substrate binding domain UNDKW_4298 PF10415 Fumarase C C-terminus UNDKW_4298 PF00206 Lyase UNDKW_4299 PF00375 Sodium:dicarboxylate symporter family UNDKW_4302 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4302 PF03466 LysR substrate binding domain UNDKW_4304 PF05114 Protein of unknown function (DUF692) UNDKW_4311 PF01548 Transposase UNDKW_4311 PF02371 Transposase IS116/IS110/IS902 family UNDKW_4313 PF03466 LysR substrate binding domain UNDKW_4313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4314 PF00248 Aldo/keto reductase family UNDKW_4315 PF02492 CobW/HypB/UreG, nucleotide-binding domain UNDKW_4315 PF07683 Cobalamin synthesis protein cobW C-terminal domain UNDKW_4317 PF00005 ABC transporter UNDKW_4320 PF00593 TonB dependent receptor UNDKW_4320 PF07715 TonB-dependent Receptor Plug Domain UNDKW_4325 PF02203 Tar ligand binding domain homologue UNDKW_4325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4325 PF00672 HAMP domain UNDKW_4326 PF00672 HAMP domain UNDKW_4326 PF00072 Response regulator receiver domain UNDKW_4326 PF01627 Hpt domain UNDKW_4326 PF17149 Periplasmic sensor domain found in signal transduction proteins UNDKW_4326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4326 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4327 PF02311 AraC-like ligand binding domain UNDKW_4327 PF12833 Helix-turn-helix domain UNDKW_4329 PF00892 EamA-like transporter family UNDKW_4333 PF07690 Major Facilitator Superfamily UNDKW_4339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4339 PF03466 LysR substrate binding domain UNDKW_4340 PF07690 Major Facilitator Superfamily UNDKW_4342 PF07690 Major Facilitator Superfamily UNDKW_4354 PF12889 Protein of unknown function (DUF3829) UNDKW_4357 PF12833 Helix-turn-helix domain UNDKW_4358 PF07883 Cupin domain UNDKW_4361 PF00392 Bacterial regulatory proteins, gntR family UNDKW_4361 PF07729 FCD domain UNDKW_4363 PF01053 Cys/Met metabolism PLP-dependent enzyme UNDKW_4367 PF13026 Protein of unknown function (DUF3887) UNDKW_4367 PF12146 Serine aminopeptidase, S33 UNDKW_4371 PF00392 Bacterial regulatory proteins, gntR family UNDKW_4371 PF00155 Aminotransferase class I and II UNDKW_4376 PF00266 Aminotransferase class-V UNDKW_4378 PF00107 Zinc-binding dehydrogenase UNDKW_4378 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_4379 PF03466 LysR substrate binding domain UNDKW_4379 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4387 PF00106 short chain dehydrogenase UNDKW_4389 PF06719 AraC-type transcriptional regulator N-terminus UNDKW_4389 PF12833 Helix-turn-helix domain UNDKW_4391 PF00892 EamA-like transporter family UNDKW_4392 PF07859 alpha/beta hydrolase fold UNDKW_4393 PF01047 MarR family UNDKW_4398 PF05170 AsmA family UNDKW_4403 PF00005 ABC transporter UNDKW_4404 PF02405 Permease MlaE UNDKW_4406 PF03631 Virulence factor BrkB UNDKW_4407 PF07995 Glucose / Sorbosone dehydrogenase UNDKW_4409 PF00563 EAL domain UNDKW_4409 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4409 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4412 PF01699 Sodium/calcium exchanger protein UNDKW_4413 PF07690 Major Facilitator Superfamily UNDKW_4415 PF13609 Gram-negative porin UNDKW_4416 PF03466 LysR substrate binding domain UNDKW_4416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4417 PF00375 Sodium:dicarboxylate symporter family UNDKW_4423 PF10415 Fumarase C C-terminus UNDKW_4423 PF00206 Lyase UNDKW_4426 PF00593 TonB dependent receptor UNDKW_4426 PF07715 TonB-dependent Receptor Plug Domain UNDKW_4431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4431 PF03466 LysR substrate binding domain UNDKW_4438 PF01609 Transposase DDE domain UNDKW_4445 PF03050 Transposase IS66 family UNDKW_4445 PF13817 IS66 C-terminal element UNDKW_4445 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_4445 PF13007 Transposase C of IS166 homeodomain UNDKW_4450 PF05593 RHS Repeat UNDKW_4455 PF07690 Major Facilitator Superfamily UNDKW_4456 PF03466 LysR substrate binding domain UNDKW_4456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4462 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain UNDKW_4462 PF00326 Prolyl oligopeptidase family UNDKW_4463 PF08719 Domain of unknown function (DUF1768) UNDKW_4466 PF16153 Domain of unknown function (DUF4861) UNDKW_4469 PF00884 Sulfatase UNDKW_4473 PF00445 Ribonuclease T2 family UNDKW_4477 PF13493 Domain of unknown function (DUF4118) UNDKW_4477 PF00989 PAS fold UNDKW_4477 PF08447 PAS fold UNDKW_4477 PF13426 PAS domain UNDKW_4477 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4478 PF00072 Response regulator receiver domain UNDKW_4478 PF00196 Bacterial regulatory proteins, luxR family UNDKW_4479 PF00158 Sigma-54 interaction domain UNDKW_4479 PF00072 Response regulator receiver domain UNDKW_4479 PF02954 Bacterial regulatory protein, Fis family UNDKW_4480 PF02203 Tar ligand binding domain homologue UNDKW_4480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4480 PF00672 HAMP domain UNDKW_4481 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4481 PF08447 PAS fold UNDKW_4481 PF00563 EAL domain UNDKW_4481 PF08448 PAS fold UNDKW_4481 PF13426 PAS domain UNDKW_4481 PF05231 MASE1 UNDKW_4483 PF13340 Putative transposase of IS4/5 family (DUF4096) UNDKW_4485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_4485 PF00672 HAMP domain UNDKW_4485 PF02203 Tar ligand binding domain homologue UNDKW_4496 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_4497 PF07690 Major Facilitator Superfamily UNDKW_4500 PF07715 TonB-dependent Receptor Plug Domain UNDKW_4500 PF00593 TonB dependent receptor UNDKW_4507 PF01544 CorA-like Mg2+ transporter protein UNDKW_4509 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_4512 PF12802 MarR family UNDKW_4521 PF03747 ADP-ribosylglycohydrolase UNDKW_4526 PF01797 Transposase IS200 like UNDKW_4528 PF01367 5'-3' exonuclease, C-terminal SAM fold UNDKW_4528 PF00476 DNA polymerase family A UNDKW_4528 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UNDKW_4528 PF01612 3'-5' exonuclease UNDKW_4529 PF03641 Possible lysine decarboxylase UNDKW_4533 PF00912 Transglycosylase UNDKW_4534 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UNDKW_4534 PF01488 Shikimate / quinate 5-dehydrogenase UNDKW_4534 PF08501 Shikimate dehydrogenase substrate binding domain UNDKW_4536 PF00773 RNB domain UNDKW_4537 PF04345 Chorismate lyase UNDKW_4538 PF05728 Uncharacterised protein family (UPF0227) UNDKW_4539 PF08245 Mur ligase middle domain UNDKW_4539 PF02875 Mur ligase family, glutamate ligase domain UNDKW_4539 PF01225 Mur ligase family, catalytic domain UNDKW_4541 PF01435 Peptidase family M48 UNDKW_4542 PF05987 Bacterial protein of unknown function (DUF898) UNDKW_4545 PF00289 Biotin carboxylase, N-terminal domain UNDKW_4545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UNDKW_4545 PF02785 Biotin carboxylase C-terminal domain UNDKW_4546 PF00364 Biotin-requiring enzyme UNDKW_4547 PF01220 Dehydroquinase class II UNDKW_4548 PF00578 AhpC/TSA family UNDKW_4551 PF07690 Major Facilitator Superfamily UNDKW_4552 PF00529 HlyD membrane-fusion protein of T1SS UNDKW_4552 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_4553 PF02321 Outer membrane efflux protein UNDKW_4554 PF01047 MarR family UNDKW_4555 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4555 PF07694 5TMR of 5TMR-LYT UNDKW_4559 PF00331 Glycosyl hydrolase family 10 UNDKW_4559 PF00553 Cellulose binding domain UNDKW_4559 PF02013 Cellulose or protein binding domain UNDKW_4570 PF04616 Glycosyl hydrolases family 43 UNDKW_4570 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain UNDKW_4572 PF00486 Transcriptional regulatory protein, C terminal UNDKW_4572 PF00072 Response regulator receiver domain UNDKW_4573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4573 PF08521 Two-component sensor kinase N-terminal UNDKW_4573 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4575 PF00474 Sodium:solute symporter family UNDKW_4576 PF02311 AraC-like ligand binding domain UNDKW_4576 PF12833 Helix-turn-helix domain UNDKW_4577 PF01810 LysE type translocator UNDKW_4578 PF12706 Beta-lactamase superfamily domain UNDKW_4582 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system UNDKW_4584 PF01047 MarR family UNDKW_4585 PF00892 EamA-like transporter family UNDKW_4586 PF00881 Nitroreductase family UNDKW_4589 PF04244 Deoxyribodipyrimidine photo-lyase-related protein UNDKW_4591 PF00484 Carbonic anhydrase UNDKW_4594 PF03795 YCII-related domain UNDKW_4596 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_4599 PF03459 TOBE domain UNDKW_4599 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4600 PF00005 ABC transporter UNDKW_4600 PF08402 TOBE domain UNDKW_4601 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4606 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4606 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4606 PF00563 EAL domain UNDKW_4607 PF00226 DnaJ domain UNDKW_4607 PF01556 DnaJ C terminal domain UNDKW_4607 PF00684 DnaJ central domain UNDKW_4608 PF00012 Hsp70 protein UNDKW_4609 PF01025 GrpE UNDKW_4610 PF16363 GDP-mannose 4,6 dehydratase UNDKW_4611 PF00483 Nucleotidyl transferase UNDKW_4612 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase UNDKW_4613 PF04321 RmlD substrate binding domain UNDKW_4614 PF05523 WxcM-like, C-terminal UNDKW_4615 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_4619 PF01370 NAD dependent epimerase/dehydratase family UNDKW_4620 PF02397 Bacterial sugar transferase UNDKW_4621 PF02719 Polysaccharide biosynthesis protein UNDKW_4622 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UNDKW_4622 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UNDKW_4622 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UNDKW_4622 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UNDKW_4623 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UNDKW_4628 PF00793 DAHP synthetase I family UNDKW_4631 PF00534 Glycosyl transferases group 1 UNDKW_4631 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) UNDKW_4632 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UNDKW_4632 PF00672 HAMP domain UNDKW_4632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4632 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4632 PF01627 Hpt domain UNDKW_4632 PF00072 Response regulator receiver domain UNDKW_4633 PF00317 Ribonucleotide reductase, all-alpha domain UNDKW_4633 PF02867 Ribonucleotide reductase, barrel domain UNDKW_4633 PF03477 ATP cone domain UNDKW_4634 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_4634 PF14497 Glutathione S-transferase, C-terminal domain UNDKW_4635 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_4635 PF00005 ABC transporter UNDKW_4637 PF02653 Branched-chain amino acid transport system / permease component UNDKW_4639 PF00355 Rieske [2Fe-2S] domain UNDKW_4640 PF13577 SnoaL-like domain UNDKW_4641 PF00355 Rieske [2Fe-2S] domain UNDKW_4641 PF00848 Ring hydroxylating alpha subunit (catalytic domain) UNDKW_4642 PF01557 Fumarylacetoacetate (FAA) hydrolase family UNDKW_4643 PF07883 Cupin domain UNDKW_4644 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_4644 PF00970 Oxidoreductase FAD-binding domain UNDKW_4644 PF00175 Oxidoreductase NAD-binding domain UNDKW_4645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4645 PF03466 LysR substrate binding domain UNDKW_4647 PF07732 Multicopper oxidase UNDKW_4647 PF07731 Multicopper oxidase UNDKW_4648 PF07690 Major Facilitator Superfamily UNDKW_4649 PF07690 Major Facilitator Superfamily UNDKW_4650 PF14710 Respiratory nitrate reductase alpha N-terminal UNDKW_4650 PF01568 Molydopterin dinucleotide binding domain UNDKW_4650 PF00384 Molybdopterin oxidoreductase UNDKW_4651 PF14711 Respiratory nitrate reductase beta C-terminal UNDKW_4651 PF13247 4Fe-4S dicluster domain UNDKW_4652 PF02613 Nitrate reductase delta subunit UNDKW_4653 PF02665 Nitrate reductase gamma subunit UNDKW_4654 PF09312 SurA N-terminal domain UNDKW_4654 PF00639 PPIC-type PPIASE domain UNDKW_4657 PF06463 Molybdenum Cofactor Synthesis C UNDKW_4657 PF04055 Radical SAM superfamily UNDKW_4658 PF04055 Radical SAM superfamily UNDKW_4658 PF06463 Molybdenum Cofactor Synthesis C UNDKW_4659 PF00484 Carbonic anhydrase UNDKW_4660 PF00672 HAMP domain UNDKW_4660 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term UNDKW_4660 PF07730 Histidine kinase UNDKW_4660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4661 PF00196 Bacterial regulatory proteins, luxR family UNDKW_4661 PF00072 Response regulator receiver domain UNDKW_4662 PF13545 Crp-like helix-turn-helix domain UNDKW_4662 PF00027 Cyclic nucleotide-binding domain UNDKW_4663 PF01136 Peptidase family U32 UNDKW_4664 PF01136 Peptidase family U32 UNDKW_4665 PF02036 SCP-2 sterol transfer family UNDKW_4666 PF08859 DGC domain UNDKW_4668 PF00171 Aldehyde dehydrogenase family UNDKW_4669 PF01625 Peptide methionine sulfoxide reductase UNDKW_4670 PF17991 Thioredoxin like C-terminal domain UNDKW_4670 PF02683 Cytochrome C biogenesis protein transmembrane region UNDKW_4670 PF00578 AhpC/TSA family UNDKW_4671 PF01641 SelR domain UNDKW_4672 PF00072 Response regulator receiver domain UNDKW_4672 PF00486 Transcriptional regulatory protein, C terminal UNDKW_4673 PF18698 Histidine kinase sensor domain UNDKW_4673 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4673 PF00989 PAS fold UNDKW_4673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4673 PF00672 HAMP domain UNDKW_4678 PF02469 Fasciclin domain UNDKW_4680 PF02321 Outer membrane efflux protein UNDKW_4681 PF00873 AcrB/AcrD/AcrF family UNDKW_4682 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_4683 PF07859 alpha/beta hydrolase fold UNDKW_4684 PF03466 LysR substrate binding domain UNDKW_4684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4685 PF02837 Glycosyl hydrolases family 2, sugar binding domain UNDKW_4685 PF02836 Glycosyl hydrolases family 2, TIM barrel domain UNDKW_4685 PF00703 Glycosyl hydrolases family 2 UNDKW_4685 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 UNDKW_4685 PF16355 Domain of unknown function (DUF4982) UNDKW_4686 PF00672 HAMP domain UNDKW_4686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4686 PF18698 Histidine kinase sensor domain UNDKW_4686 PF00989 PAS fold UNDKW_4686 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4687 PF02374 Anion-transporting ATPase UNDKW_4688 PF03960 ArsC family UNDKW_4689 PF03358 NADPH-dependent FMN reductase UNDKW_4690 PF03358 NADPH-dependent FMN reductase UNDKW_4698 PF04055 Radical SAM superfamily UNDKW_4698 PF13186 Iron-sulfur cluster-binding domain UNDKW_4706 PF01761 3-dehydroquinate synthase UNDKW_4711 PF01812 5-formyltetrahydrofolate cyclo-ligase family UNDKW_4712 PF01464 Transglycosylase SLT domain UNDKW_4712 PF14718 Soluble lytic murein transglycosylase L domain UNDKW_4713 PF13417 Glutathione S-transferase, N-terminal domain UNDKW_4713 PF00043 Glutathione S-transferase, C-terminal domain UNDKW_4714 PF12627 Probable RNA and SrmB- binding site of polymerase A UNDKW_4714 PF01743 Poly A polymerase head domain UNDKW_4714 PF01966 HD domain UNDKW_4716 PF13404 AsnC-type helix-turn-helix domain UNDKW_4716 PF01037 Lrp/AsnC ligand binding domain UNDKW_4717 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UNDKW_4718 PF00351 Biopterin-dependent aromatic amino acid hydroxylase UNDKW_4720 PF00486 Transcriptional regulatory protein, C terminal UNDKW_4720 PF00072 Response regulator receiver domain UNDKW_4721 PF00672 HAMP domain UNDKW_4721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4721 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4723 PF01810 LysE type translocator UNDKW_4724 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4724 PF03466 LysR substrate binding domain UNDKW_4725 PF03279 Bacterial lipid A biosynthesis acyltransferase UNDKW_4727 PF02773 S-adenosylmethionine synthetase, C-terminal domain UNDKW_4727 PF00438 S-adenosylmethionine synthetase, N-terminal domain UNDKW_4727 PF02772 S-adenosylmethionine synthetase, central domain UNDKW_4731 PF01738 Dienelactone hydrolase family UNDKW_4732 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UNDKW_4732 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_4738 PF00581 Rhodanese-like domain UNDKW_4739 PF00892 EamA-like transporter family UNDKW_4742 PF07729 FCD domain UNDKW_4742 PF00392 Bacterial regulatory proteins, gntR family UNDKW_4744 PF00561 alpha/beta hydrolase fold UNDKW_4746 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system UNDKW_4748 PF02609 Exonuclease VII small subunit UNDKW_4749 PF00348 Polyprenyl synthetase UNDKW_4750 PF02780 Transketolase, C-terminal domain UNDKW_4750 PF02779 Transketolase, pyrimidine binding domain UNDKW_4750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase UNDKW_4756 PF06314 Acetoacetate decarboxylase (ADC) UNDKW_4760 PF01923 Cobalamin adenosyltransferase UNDKW_4762 PF01565 FAD binding domain UNDKW_4762 PF02913 FAD linked oxidases, C-terminal domain UNDKW_4763 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4763 PF03466 LysR substrate binding domain UNDKW_4764 PF00563 EAL domain UNDKW_4764 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4764 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4765 PF00248 Aldo/keto reductase family UNDKW_4767 PF03702 Anhydro-N-acetylmuramic acid kinase UNDKW_4769 PF01551 Peptidase family M23 UNDKW_4769 PF01476 LysM domain UNDKW_4769 PF08525 Opacity-associated protein A N-terminal motif UNDKW_4770 PF01479 S4 domain UNDKW_4770 PF00579 tRNA synthetases class I (W and Y) UNDKW_4771 PF02580 D-Tyr-tRNA(Tyr) deacylase UNDKW_4772 PF00300 Histidine phosphatase superfamily (branch 1) UNDKW_4773 PF04397 LytTr DNA-binding domain UNDKW_4773 PF00072 Response regulator receiver domain UNDKW_4774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4774 PF02743 Cache domain UNDKW_4774 PF00672 HAMP domain UNDKW_4774 PF06580 Histidine kinase UNDKW_4777 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_4778 PF01207 Dihydrouridine synthase (Dus) UNDKW_4779 PF02954 Bacterial regulatory protein, Fis family UNDKW_4780 PF01808 AICARFT/IMPCHase bienzyme UNDKW_4780 PF02142 MGS-like domain UNDKW_4781 PF02075 Crossover junction endodeoxyribonuclease RuvC UNDKW_4782 PF07499 RuvA, C-terminal domain UNDKW_4782 PF01330 RuvA N terminal domain UNDKW_4783 PF05491 RuvB C-terminal winged helix domain UNDKW_4783 PF05496 Holliday junction DNA helicase RuvB P-loop domain UNDKW_4783 PF17864 RuvB AAA lid domain UNDKW_4784 PF01557 Fumarylacetoacetate (FAA) hydrolase family UNDKW_4785 PF13609 Gram-negative porin UNDKW_4786 PF13609 Gram-negative porin UNDKW_4787 PF03232 Ubiquinone biosynthesis protein COQ7 UNDKW_4788 PF13361 UvrD-like helicase C-terminal domain UNDKW_4788 PF00580 UvrD/REP helicase N-terminal domain UNDKW_4789 PF00701 Dihydrodipicolinate synthetase family UNDKW_4792 PF02581 Thiamine monophosphate synthase UNDKW_4793 PF08543 Phosphomethylpyrimidine kinase UNDKW_4794 PF05690 Thiazole biosynthesis protein ThiG UNDKW_4795 PF02597 ThiS family UNDKW_4796 PF01964 Radical SAM ThiC family UNDKW_4796 PF13667 ThiC-associated domain UNDKW_4797 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4798 PF03707 Bacterial signalling protein N terminal repeat UNDKW_4798 PF00563 EAL domain UNDKW_4798 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4801 PF08264 Anticodon-binding domain of tRNA UNDKW_4801 PF00133 tRNA synthetases class I (I, L, M and V) UNDKW_4801 PF10458 Valyl tRNA synthetase tRNA binding arm UNDKW_4804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4804 PF08447 PAS fold UNDKW_4804 PF08448 PAS fold UNDKW_4807 PF01979 Amidohydrolase family UNDKW_4811 PF13817 IS66 C-terminal element UNDKW_4811 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_4811 PF03050 Transposase IS66 family UNDKW_4811 PF13007 Transposase C of IS166 homeodomain UNDKW_4813 PF00005 ABC transporter UNDKW_4814 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4815 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4816 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_4817 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_4818 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UNDKW_4818 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UNDKW_4819 PF03466 LysR substrate binding domain UNDKW_4819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4820 PF00664 ABC transporter transmembrane region UNDKW_4820 PF00005 ABC transporter UNDKW_4823 PF03061 Thioesterase superfamily UNDKW_4824 PF16655 PhoD-like phosphatase, N-terminal domain UNDKW_4824 PF09423 PhoD-like phosphatase UNDKW_4825 PF00501 AMP-binding enzyme UNDKW_4825 PF13193 AMP-binding enzyme C-terminal domain UNDKW_4826 PF01568 Molydopterin dinucleotide binding domain UNDKW_4826 PF00384 Molybdopterin oxidoreductase UNDKW_4826 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UNDKW_4827 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UNDKW_4827 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UNDKW_4828 PF09411 Lipid A 3-O-deacylase (PagL) UNDKW_4830 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_4832 PF04379 ApaG domain UNDKW_4833 PF00834 Ribulose-phosphate 3 epimerase family UNDKW_4834 PF13419 Haloacid dehalogenase-like hydrolase UNDKW_4835 PF04715 Anthranilate synthase component I, N terminal region UNDKW_4835 PF00425 chorismate binding enzyme UNDKW_4836 PF00117 Glutamine amidotransferase class-I UNDKW_4837 PF02885 Glycosyl transferase family, helical bundle domain UNDKW_4837 PF00591 Glycosyl transferase family, a/b domain UNDKW_4838 PF00218 Indole-3-glycerol phosphate synthase UNDKW_4842 PF02542 YgbB family UNDKW_4842 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UNDKW_4843 PF10411 Disulfide bond isomerase protein N-terminus UNDKW_4843 PF13098 Thioredoxin-like domain UNDKW_4844 PF01494 FAD binding domain UNDKW_4845 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_4848 PF00665 Integrase core domain UNDKW_4849 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UNDKW_4850 PF00005 ABC transporter UNDKW_4851 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4856 PF03009 Glycerophosphoryl diester phosphodiesterase family UNDKW_4858 PF06414 Zeta toxin UNDKW_4861 PF00472 RF-1 domain UNDKW_4862 PF00376 MerR family regulatory protein UNDKW_4862 PF09278 MerR, DNA binding UNDKW_4863 PF01804 Penicillin amidase UNDKW_4864 PF01594 AI-2E family transporter UNDKW_4867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_4867 PF03466 LysR substrate binding domain UNDKW_4868 PF08028 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_4868 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_4869 PF09383 NIL domain UNDKW_4869 PF00005 ABC transporter UNDKW_4870 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4871 PF03180 NLPA lipoprotein UNDKW_4872 PF00296 Luciferase-like monooxygenase UNDKW_4873 PF09084 NMT1/THI5 like UNDKW_4874 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_4875 PF00005 ABC transporter UNDKW_4876 PF03775 Septum formation inhibitor MinC, C-terminal domain UNDKW_4876 PF05209 Septum formation inhibitor MinC, N-terminal domain UNDKW_4877 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UNDKW_4878 PF03776 Septum formation topological specificity factor MinE UNDKW_4879 PF00486 Transcriptional regulatory protein, C terminal UNDKW_4879 PF00072 Response regulator receiver domain UNDKW_4881 PF00989 PAS fold UNDKW_4881 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4882 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain UNDKW_4882 PF01488 Shikimate / quinate 5-dehydrogenase UNDKW_4882 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain UNDKW_4883 PF03462 PCRF domain UNDKW_4883 PF00472 RF-1 domain UNDKW_4884 PF02600 Disulfide bond formation protein DsbB UNDKW_4885 PF17827 PrmC N-terminal domain UNDKW_4885 PF05175 Methyltransferase small domain UNDKW_4895 PF00005 ABC transporter UNDKW_4897 PF01435 Peptidase family M48 UNDKW_4899 PF00005 ABC transporter UNDKW_4900 PF02687 FtsX-like permease family UNDKW_4900 PF12704 MacB-like periplasmic core domain UNDKW_4900 PF00005 ABC transporter UNDKW_4901 PF00005 ABC transporter UNDKW_4901 PF02687 FtsX-like permease family UNDKW_4901 PF12704 MacB-like periplasmic core domain UNDKW_4902 PF00072 Response regulator receiver domain UNDKW_4902 PF02954 Bacterial regulatory protein, Fis family UNDKW_4902 PF00158 Sigma-54 interaction domain UNDKW_4903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4903 PF00672 HAMP domain UNDKW_4903 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4904 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_4904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4904 PF00672 HAMP domain UNDKW_4904 PF16750 Sensor domain of 2-component histidine kinase UNDKW_4905 PF00486 Transcriptional regulatory protein, C terminal UNDKW_4905 PF00072 Response regulator receiver domain UNDKW_4907 PF00005 ABC transporter UNDKW_4907 PF16326 ABC transporter C-terminal domain UNDKW_4907 PF12848 ABC transporter UNDKW_4908 PF07730 Histidine kinase UNDKW_4908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_4908 PF05231 MASE1 UNDKW_4909 PF00196 Bacterial regulatory proteins, luxR family UNDKW_4909 PF00072 Response regulator receiver domain UNDKW_4921 PF17674 HHH domain UNDKW_4921 PF16921 Tex protein YqgF-like domain UNDKW_4921 PF00575 S1 RNA binding domain UNDKW_4921 PF09371 Tex-like protein N-terminal domain UNDKW_4922 PF00171 Aldehyde dehydrogenase family UNDKW_4924 PF00158 Sigma-54 interaction domain UNDKW_4924 PF02954 Bacterial regulatory protein, Fis family UNDKW_4924 PF01590 GAF domain UNDKW_4925 PF00462 Glutaredoxin UNDKW_4926 PF02441 Flavoprotein UNDKW_4933 PF00326 Prolyl oligopeptidase family UNDKW_4933 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region UNDKW_4934 PF04386 Stringent starvation protein B UNDKW_4935 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_4935 PF00043 Glutathione S-transferase, C-terminal domain UNDKW_4936 PF02167 Cytochrome C1 family UNDKW_4937 PF00032 Cytochrome b(C-terminal)/b6/petD UNDKW_4937 PF00033 Cytochrome b/b6/petB UNDKW_4938 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal UNDKW_4938 PF00355 Rieske [2Fe-2S] domain UNDKW_4939 PF01741 Large-conductance mechanosensitive channel, MscL UNDKW_4940 PF01784 NIF3 (NGG1p interacting factor 3) UNDKW_4941 PF13180 PDZ domain UNDKW_4941 PF17820 PDZ domain UNDKW_4943 PF00902 Sec-independent protein translocase protein (TatC) UNDKW_4944 PF02416 mttA/Hcf106 family UNDKW_4945 PF02416 mttA/Hcf106 family UNDKW_4947 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase UNDKW_4948 PF01502 Phosphoribosyl-AMP cyclohydrolase UNDKW_4949 PF00977 Histidine biosynthesis protein UNDKW_4950 PF00977 Histidine biosynthesis protein UNDKW_4951 PF00117 Glutamine amidotransferase class-I UNDKW_4952 PF00475 Imidazoleglycerol-phosphate dehydratase UNDKW_4953 PF00155 Aminotransferase class I and II UNDKW_4954 PF01555 DNA methylase UNDKW_4955 PF00815 Histidinol dehydrogenase UNDKW_4956 PF01634 ATP phosphoribosyltransferase UNDKW_4957 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UNDKW_4958 PF01722 BolA-like protein UNDKW_4959 PF01061 ABC-2 type transporter UNDKW_4960 PF00005 ABC transporter UNDKW_4964 PF02470 MlaD protein UNDKW_4965 PF02405 Permease MlaE UNDKW_4966 PF00005 ABC transporter UNDKW_4967 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_4967 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UNDKW_4968 PF04898 Glutamate synthase central domain UNDKW_4968 PF01493 GXGXG motif UNDKW_4968 PF01645 Conserved region in glutamate synthase UNDKW_4968 PF00310 Glutamine amidotransferases class-II UNDKW_4975 PF00270 DEAD/DEAH box helicase UNDKW_4975 PF00271 Helicase conserved C-terminal domain UNDKW_4978 PF00436 Single-strand binding protein family UNDKW_4979 PF07690 Major Facilitator Superfamily UNDKW_4980 PF17755 UvrA DNA-binding domain UNDKW_4980 PF17760 UvrA interaction domain UNDKW_4981 PF01195 Peptidyl-tRNA hydrolase UNDKW_4987 PF07690 Major Facilitator Superfamily UNDKW_4988 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_4988 PF12793 Sugar transport-related sRNA regulator N-term UNDKW_4989 PF01554 MatE UNDKW_4990 PF01554 MatE UNDKW_4991 PF06071 Protein of unknown function (DUF933) UNDKW_4991 PF01926 50S ribosome-binding GTPase UNDKW_4992 PF00072 Response regulator receiver domain UNDKW_4992 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4993 PF00356 Bacterial regulatory proteins, lacI family UNDKW_4995 PF12833 Helix-turn-helix domain UNDKW_4995 PF01965 DJ-1/PfpI family UNDKW_4997 PF00072 Response regulator receiver domain UNDKW_4997 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_4998 PF00037 4Fe-4S binding domain UNDKW_4999 PF01467 Cytidylyltransferase-like UNDKW_5001 PF02881 SRP54-type protein, helical bundle domain UNDKW_5001 PF00448 SRP54-type protein, GTPase domain UNDKW_5002 PF00005 ABC transporter UNDKW_5003 PF18075 FtsX extracellular domain UNDKW_5004 PF00140 Sigma-70 factor, region 1.2 UNDKW_5004 PF04542 Sigma-70 region 2 UNDKW_5004 PF04545 Sigma-70, region 4 UNDKW_5005 PF02630 SCO1/SenC UNDKW_5006 PF01040 UbiA prenyltransferase family UNDKW_5007 PF02628 Cytochrome oxidase assembly protein UNDKW_5011 PF00510 Cytochrome c oxidase subunit III UNDKW_5013 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 UNDKW_5014 PF00115 Cytochrome C and Quinol oxidase polypeptide I UNDKW_5015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UNDKW_5015 PF02790 Cytochrome C oxidase subunit II, transmembrane domain UNDKW_5016 PF08241 Methyltransferase domain UNDKW_5018 PF00156 Phosphoribosyl transferase domain UNDKW_5019 PF00588 SpoU rRNA Methylase family UNDKW_5020 PF13426 PAS domain UNDKW_5020 PF08448 PAS fold UNDKW_5020 PF08447 PAS fold UNDKW_5020 PF05231 MASE1 UNDKW_5020 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5020 PF00563 EAL domain UNDKW_5021 PF00563 EAL domain UNDKW_5021 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5021 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5022 PF01467 Cytidylyltransferase-like UNDKW_5024 PF03466 LysR substrate binding domain UNDKW_5024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5025 PF12857 TOBE-like domain UNDKW_5025 PF17850 CysA C-terminal regulatory domain UNDKW_5025 PF00005 ABC transporter UNDKW_5026 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_5027 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_5029 PF03459 TOBE domain UNDKW_5030 PF00005 ABC transporter UNDKW_5031 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_5032 PF00296 Luciferase-like monooxygenase UNDKW_5033 PF09084 NMT1/THI5 like UNDKW_5034 PF09084 NMT1/THI5 like UNDKW_5035 PF03358 NADPH-dependent FMN reductase UNDKW_5037 PF00255 Glutathione peroxidase UNDKW_5038 PF09339 IclR helix-turn-helix domain UNDKW_5038 PF01614 Bacterial transcriptional regulator UNDKW_5040 PF01494 FAD binding domain UNDKW_5043 PF01266 FAD dependent oxidoreductase UNDKW_5053 PF00216 Bacterial DNA-binding protein UNDKW_5084 PF01323 DSBA-like thioredoxin domain UNDKW_5091 PF00437 Type II/IV secretion system protein UNDKW_5111 PF00884 Sulfatase UNDKW_5115 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_5115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UNDKW_5121 PF13458 Periplasmic binding protein UNDKW_5124 PF03793 PASTA domain UNDKW_5124 PF00069 Protein kinase domain UNDKW_5126 PF06508 Queuosine biosynthesis protein QueC UNDKW_5133 PF00550 Phosphopantetheine attachment site UNDKW_5135 PF02146 Sir2 family UNDKW_5136 PF07969 Amidohydrolase family UNDKW_5137 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_5138 PF06299 Protein of unknown function (DUF1045) UNDKW_5139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5139 PF03466 LysR substrate binding domain UNDKW_5140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5140 PF03466 LysR substrate binding domain UNDKW_5141 PF13460 NAD(P)H-binding UNDKW_5142 PF07690 Major Facilitator Superfamily UNDKW_5143 PF07690 Major Facilitator Superfamily UNDKW_5145 PF08241 Methyltransferase domain UNDKW_5145 PF12697 Alpha/beta hydrolase family UNDKW_5146 PF02310 B12 binding domain UNDKW_5146 PF04055 Radical SAM superfamily UNDKW_5147 PF02515 CoA-transferase family III UNDKW_5148 PF00285 Citrate synthase, C-terminal domain UNDKW_5149 PF13443 Cro/C1-type HTH DNA-binding domain UNDKW_5151 PF00593 TonB dependent receptor UNDKW_5151 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5153 PF06969 HemN C-terminal domain UNDKW_5153 PF04055 Radical SAM superfamily UNDKW_5158 PF00313 'Cold-shock' DNA-binding domain UNDKW_5164 PF00005 ABC transporter UNDKW_5172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5172 PF03466 LysR substrate binding domain UNDKW_5173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5173 PF03466 LysR substrate binding domain UNDKW_5174 PF00857 Isochorismatase family UNDKW_5176 PF07969 Amidohydrolase family UNDKW_5186 PF16655 PhoD-like phosphatase, N-terminal domain UNDKW_5186 PF09423 PhoD-like phosphatase UNDKW_5188 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) UNDKW_5189 PF04241 Protein of unknown function (DUF423) UNDKW_5191 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UNDKW_5193 PF00672 HAMP domain UNDKW_5193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5193 PF02203 Tar ligand binding domain homologue UNDKW_5194 PF01678 Diaminopimelate epimerase UNDKW_5196 PF02899 Phage integrase, N-terminal SAM-like domain UNDKW_5196 PF00589 Phage integrase family UNDKW_5197 PF04972 BON domain UNDKW_5197 PF00691 OmpA family UNDKW_5200 PF07683 Cobalamin synthesis protein cobW C-terminal domain UNDKW_5200 PF02492 CobW/HypB/UreG, nucleotide-binding domain UNDKW_5201 PF01258 Prokaryotic dksA/traR C4-type zinc finger UNDKW_5203 PF00593 TonB dependent receptor UNDKW_5203 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5206 PF00227 Proteasome subunit UNDKW_5207 PF07724 AAA domain (Cdc48 subfamily) UNDKW_5207 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_5209 PF13185 GAF domain UNDKW_5212 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus UNDKW_5212 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UNDKW_5214 PF02556 Preprotein translocase subunit SecB UNDKW_5215 PF00462 Glutaredoxin UNDKW_5216 PF00581 Rhodanese-like domain UNDKW_5217 PF00300 Histidine phosphatase superfamily (branch 1) UNDKW_5218 PF01551 Peptidase family M23 UNDKW_5219 PF03572 Peptidase family S41 UNDKW_5219 PF13180 PDZ domain UNDKW_5220 PF00899 ThiF family UNDKW_5221 PF00043 Glutathione S-transferase, C-terminal domain UNDKW_5221 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_5222 PF05175 Methyltransferase small domain UNDKW_5223 PF05762 VWA domain containing CoxE-like protein UNDKW_5225 PF07728 AAA domain (dynein-related subfamily) UNDKW_5230 PF00005 ABC transporter UNDKW_5231 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_5231 PF00005 ABC transporter UNDKW_5234 PF04715 Anthranilate synthase component I, N terminal region UNDKW_5234 PF00425 chorismate binding enzyme UNDKW_5235 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5235 PF08447 PAS fold UNDKW_5235 PF08448 PAS fold UNDKW_5235 PF00563 EAL domain UNDKW_5235 PF05231 MASE1 UNDKW_5235 PF13426 PAS domain UNDKW_5238 PF00440 Bacterial regulatory proteins, tetR family UNDKW_5240 PF00696 Amino acid kinase family UNDKW_5241 PF08281 Sigma-70, region 4 UNDKW_5241 PF04542 Sigma-70 region 2 UNDKW_5244 PF01227 GTP cyclohydrolase I UNDKW_5248 PF04011 LemA family UNDKW_5249 PF04972 BON domain UNDKW_5250 PF13580 SIS domain UNDKW_5251 PF02021 Uncharacterised protein family UPF0102 UNDKW_5252 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UNDKW_5253 PF05036 Sporulation related domain UNDKW_5253 PF03330 Lytic transglycolase UNDKW_5254 PF01098 Cell cycle protein UNDKW_5255 PF00905 Penicillin binding protein transpeptidase domain UNDKW_5255 PF03717 Penicillin-binding Protein dimerisation domain UNDKW_5258 PF04085 rod shape-determining protein MreC UNDKW_5260 PF02686 Glu-tRNAGln amidotransferase C subunit UNDKW_5261 PF01425 Amidase UNDKW_5262 PF02934 GatB/GatE catalytic domain UNDKW_5262 PF02637 GatB domain UNDKW_5263 PF02321 Outer membrane efflux protein UNDKW_5264 PF00529 HlyD membrane-fusion protein of T1SS UNDKW_5265 PF00005 ABC transporter UNDKW_5265 PF00664 ABC transporter transmembrane region UNDKW_5266 PF13439 Glycosyltransferase Family 4 UNDKW_5266 PF00534 Glycosyl transferases group 1 UNDKW_5270 PF13649 Methyltransferase domain UNDKW_5275 PF00211 Adenylate and Guanylate cyclase catalytic domain UNDKW_5277 PF00027 Cyclic nucleotide-binding domain UNDKW_5277 PF13545 Crp-like helix-turn-helix domain UNDKW_5278 PF03062 MBOAT, membrane-bound O-acyltransferase family UNDKW_5280 PF13439 Glycosyltransferase Family 4 UNDKW_5280 PF00534 Glycosyl transferases group 1 UNDKW_5282 PF00483 Nucleotidyl transferase UNDKW_5282 PF01050 Mannose-6-phosphate isomerase UNDKW_5284 PF00005 ABC transporter UNDKW_5285 PF13439 Glycosyltransferase Family 4 UNDKW_5285 PF00534 Glycosyl transferases group 1 UNDKW_5286 PF13439 Glycosyltransferase Family 4 UNDKW_5286 PF00534 Glycosyl transferases group 1 UNDKW_5287 PF16363 GDP-mannose 4,6 dehydratase UNDKW_5288 PF16363 GDP-mannose 4,6 dehydratase UNDKW_5289 PF00156 Phosphoribosyl transferase domain UNDKW_5290 PF13439 Glycosyltransferase Family 4 UNDKW_5293 PF03372 Endonuclease/Exonuclease/phosphatase family UNDKW_5294 PF00149 Calcineurin-like phosphoesterase UNDKW_5294 PF17936 Bacterial Ig domain UNDKW_5294 PF02872 5'-nucleotidase, C-terminal domain UNDKW_5298 PF00561 alpha/beta hydrolase fold UNDKW_5298 PF07021 Methionine biosynthesis protein MetW UNDKW_5299 PF00561 alpha/beta hydrolase fold UNDKW_5300 PF02896 PEP-utilising enzyme, TIM barrel domain UNDKW_5300 PF00391 PEP-utilising enzyme, mobile domain UNDKW_5300 PF05524 PEP-utilising enzyme, N-terminal UNDKW_5301 PF00381 PTS HPr component phosphorylation site UNDKW_5303 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain UNDKW_5303 PF02951 Prokaryotic glutathione synthetase, N-terminal domain UNDKW_5305 PF03992 Antibiotic biosynthesis monooxygenase UNDKW_5307 PF01124 MAPEG family UNDKW_5309 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5309 PF08448 PAS fold UNDKW_5312 PF00501 AMP-binding enzyme UNDKW_5313 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_5313 PF00005 ABC transporter UNDKW_5314 PF02653 Branched-chain amino acid transport system / permease component UNDKW_5317 PF00005 ABC transporter UNDKW_5318 PF14535 AMP-binding enzyme C-terminal domain UNDKW_5318 PF00501 AMP-binding enzyme UNDKW_5319 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_5319 PF01799 [2Fe-2S] binding domain UNDKW_5320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_5323 PF00194 Eukaryotic-type carbonic anhydrase UNDKW_5326 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_5327 PF02311 AraC-like ligand binding domain UNDKW_5327 PF12833 Helix-turn-helix domain UNDKW_5335 PF07992 Pyridine nucleotide-disulphide oxidoreductase UNDKW_5335 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UNDKW_5336 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5336 PF00563 EAL domain UNDKW_5336 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5340 PF01266 FAD dependent oxidoreductase UNDKW_5340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase UNDKW_5343 PF13462 Thioredoxin UNDKW_5345 PF00005 ABC transporter UNDKW_5345 PF02687 FtsX-like permease family UNDKW_5345 PF12704 MacB-like periplasmic core domain UNDKW_5346 PF12704 MacB-like periplasmic core domain UNDKW_5346 PF02687 FtsX-like permease family UNDKW_5346 PF00005 ABC transporter UNDKW_5347 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_5347 PF00529 HlyD membrane-fusion protein of T1SS UNDKW_5349 PF00005 ABC transporter UNDKW_5353 PF00326 Prolyl oligopeptidase family UNDKW_5353 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain UNDKW_5354 PF04262 Glutamate-cysteine ligase UNDKW_5357 PF00857 Isochorismatase family UNDKW_5361 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UNDKW_5366 PF03466 LysR substrate binding domain UNDKW_5366 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5367 PF02798 Glutathione S-transferase, N-terminal domain UNDKW_5367 PF00043 Glutathione S-transferase, C-terminal domain UNDKW_5368 PF01361 Tautomerase enzyme UNDKW_5371 PF10017 Histidine-specific methyltransferase, SAM-dependent UNDKW_5372 PF03781 Sulfatase-modifying factor enzyme 1 UNDKW_5372 PF12867 DinB superfamily UNDKW_5374 PF00682 HMGL-like UNDKW_5377 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5377 PF00989 PAS fold UNDKW_5377 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5378 PF00158 Sigma-54 interaction domain UNDKW_5378 PF02954 Bacterial regulatory protein, Fis family UNDKW_5378 PF00072 Response regulator receiver domain UNDKW_5381 PF01584 CheW-like domain UNDKW_5381 PF01627 Hpt domain UNDKW_5381 PF02895 Signal transducing histidine kinase, homodimeric domain UNDKW_5381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5381 PF00072 Response regulator receiver domain UNDKW_5382 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term UNDKW_5382 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5383 PF01584 CheW-like domain UNDKW_5384 PF00072 Response regulator receiver domain UNDKW_5385 PF00072 Response regulator receiver domain UNDKW_5385 PF00486 Transcriptional regulatory protein, C terminal UNDKW_5387 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ UNDKW_5388 PF00364 Biotin-requiring enzyme UNDKW_5388 PF02785 Biotin carboxylase C-terminal domain UNDKW_5388 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UNDKW_5388 PF00289 Biotin carboxylase, N-terminal domain UNDKW_5389 PF04055 Radical SAM superfamily UNDKW_5389 PF06968 Biotin and Thiamin Synthesis associated domain UNDKW_5391 PF00155 Aminotransferase class I and II UNDKW_5392 PF00202 Aminotransferase class-III UNDKW_5394 PF00378 Enoyl-CoA hydratase/isomerase UNDKW_5396 PF01039 Carboxyl transferase domain UNDKW_5399 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_5399 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_5399 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_5401 PF02803 Thiolase, C-terminal domain UNDKW_5401 PF00108 Thiolase, N-terminal domain UNDKW_5402 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) UNDKW_5403 PF00291 Pyridoxal-phosphate dependent enzyme UNDKW_5404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UNDKW_5404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UNDKW_5404 PF02770 Acyl-CoA dehydrogenase, middle domain UNDKW_5406 PF13411 MerR HTH family regulatory protein UNDKW_5414 PF04542 Sigma-70 region 2 UNDKW_5414 PF08281 Sigma-70, region 4 UNDKW_5417 PF09087 Cyclomaltodextrinase, N-terminal UNDKW_5417 PF00128 Alpha amylase, catalytic domain UNDKW_5417 PF10438 Cyclo-malto-dextrinase C-terminal domain UNDKW_5418 PF02774 Semialdehyde dehydrogenase, dimerisation domain UNDKW_5418 PF01118 Semialdehyde dehydrogenase, NAD binding domain UNDKW_5419 PF00892 EamA-like transporter family UNDKW_5422 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5422 PF00593 TonB dependent receptor UNDKW_5423 PF01497 Periplasmic binding protein UNDKW_5424 PF00106 short chain dehydrogenase UNDKW_5425 PF13462 Thioredoxin UNDKW_5427 PF05746 DALR anticodon binding domain UNDKW_5427 PF03485 Arginyl tRNA synthetase N terminal domain UNDKW_5427 PF00750 tRNA synthetases class I (R) UNDKW_5429 PF04381 Putative exonuclease, RdgC UNDKW_5435 PF01751 Toprim domain UNDKW_5435 PF01131 DNA topoisomerase UNDKW_5436 PF04361 Protein of unknown function (DUF494) UNDKW_5437 PF02481 DNA recombination-mediator protein A UNDKW_5437 PF17782 DprA winged helix domain UNDKW_5439 PF01327 Polypeptide deformylase UNDKW_5440 PF00551 Formyl transferase UNDKW_5440 PF02911 Formyl transferase, C-terminal domain UNDKW_5443 PF03466 LysR substrate binding domain UNDKW_5443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5444 PF01027 Inhibitor of apoptosis-promoting Bax1 UNDKW_5445 PF03741 Integral membrane protein TerC family UNDKW_5447 PF00196 Bacterial regulatory proteins, luxR family UNDKW_5447 PF00072 Response regulator receiver domain UNDKW_5448 PF02574 Homocysteine S-methyltransferase UNDKW_5448 PF02607 B12 binding domain UNDKW_5448 PF02965 Vitamin B12 dependent methionine synthase, activation domain UNDKW_5448 PF00809 Pterin binding enzyme UNDKW_5448 PF02310 B12 binding domain UNDKW_5450 PF00593 TonB dependent receptor UNDKW_5450 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5451 PF03466 LysR substrate binding domain UNDKW_5451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5455 PF11871 Domain of unknown function (DUF3391) UNDKW_5455 PF01966 HD domain UNDKW_5456 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5456 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5456 PF00563 EAL domain UNDKW_5458 PF02142 MGS-like domain UNDKW_5463 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) UNDKW_5465 PF02417 Chromate transporter UNDKW_5470 PF00392 Bacterial regulatory proteins, gntR family UNDKW_5470 PF00155 Aminotransferase class I and II UNDKW_5471 PF00375 Sodium:dicarboxylate symporter family UNDKW_5472 PF07690 Major Facilitator Superfamily UNDKW_5473 PF01595 Cyclin M transmembrane N-terminal domain UNDKW_5473 PF03471 Transporter associated domain UNDKW_5473 PF00571 CBS domain UNDKW_5474 PF00012 Hsp70 protein UNDKW_5475 PF00563 EAL domain UNDKW_5475 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5475 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5477 PF00072 Response regulator receiver domain UNDKW_5477 PF00486 Transcriptional regulatory protein, C terminal UNDKW_5478 PF00672 HAMP domain UNDKW_5478 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5481 PF13193 AMP-binding enzyme C-terminal domain UNDKW_5481 PF00501 AMP-binding enzyme UNDKW_5483 PF03061 Thioesterase superfamily UNDKW_5487 PF02203 Tar ligand binding domain homologue UNDKW_5487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5487 PF00672 HAMP domain UNDKW_5491 PF00067 Cytochrome P450 UNDKW_5494 PF01361 Tautomerase enzyme UNDKW_5495 PF01979 Amidohydrolase family UNDKW_5497 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain UNDKW_5497 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_5498 PF01799 [2Fe-2S] binding domain UNDKW_5498 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_5502 PF02861 Clp amino terminal domain, pathogenicity island component UNDKW_5502 PF17871 AAA lid domain UNDKW_5502 PF10431 C-terminal, D2-small domain, of ClpB protein UNDKW_5502 PF07724 AAA domain (Cdc48 subfamily) UNDKW_5502 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_5504 PF00069 Protein kinase domain UNDKW_5504 PF00211 Adenylate and Guanylate cyclase catalytic domain UNDKW_5507 PF01810 LysE type translocator UNDKW_5511 PF00132 Bacterial transferase hexapeptide (six repeats) UNDKW_5512 PF00270 DEAD/DEAH box helicase UNDKW_5512 PF17764 3′ DNA-binding domain (3′BD) UNDKW_5512 PF18074 Primosomal protein N C-terminal domain UNDKW_5512 PF18319 PriA DNA helicase Cys-rich region (CRR) domain UNDKW_5512 PF00271 Helicase conserved C-terminal domain UNDKW_5513 PF01208 Uroporphyrinogen decarboxylase (URO-D) UNDKW_5515 PF03976 Polyphosphate kinase 2 (PPK2) UNDKW_5519 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UNDKW_5519 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain UNDKW_5520 PF02874 ATP synthase alpha/beta family, beta-barrel domain UNDKW_5520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UNDKW_5521 PF00231 ATP synthase UNDKW_5522 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UNDKW_5522 PF00306 ATP synthase alpha/beta chain, C terminal domain UNDKW_5522 PF02874 ATP synthase alpha/beta family, beta-barrel domain UNDKW_5523 PF00213 ATP synthase delta (OSCP) subunit UNDKW_5524 PF00430 ATP synthase B/B' CF(0) UNDKW_5525 PF00137 ATP synthase subunit C UNDKW_5526 PF00119 ATP synthase A chain UNDKW_5529 PF02195 ParB-like nuclease domain UNDKW_5529 PF17762 HTH domain found in ParB protein UNDKW_5530 PF13614 AAA domain UNDKW_5531 PF02527 rRNA small subunit methyltransferase G UNDKW_5532 PF01134 Glucose inhibited division protein A UNDKW_5532 PF13932 GidA associated domain UNDKW_5533 PF01925 Sulfite exporter TauE/SafE UNDKW_5536 PF00465 Iron-containing alcohol dehydrogenase UNDKW_5537 PF03472 Autoinducer binding domain UNDKW_5537 PF00196 Bacterial regulatory proteins, luxR family UNDKW_5543 PF02653 Branched-chain amino acid transport system / permease component UNDKW_5544 PF02653 Branched-chain amino acid transport system / permease component UNDKW_5546 PF00005 ABC transporter UNDKW_5547 PF00005 ABC transporter UNDKW_5547 PF12399 Branched-chain amino acid ATP-binding cassette transporter UNDKW_5548 PF00732 GMC oxidoreductase UNDKW_5548 PF05199 GMC oxidoreductase UNDKW_5549 PF03060 Nitronate monooxygenase UNDKW_5550 PF00171 Aldehyde dehydrogenase family UNDKW_5551 PF03466 LysR substrate binding domain UNDKW_5551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5554 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UNDKW_5556 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UNDKW_5556 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UNDKW_5562 PF03033 Glycosyltransferase family 28 N-terminal domain UNDKW_5562 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase UNDKW_5563 PF07690 Major Facilitator Superfamily UNDKW_5565 PF14850 DNA-binding domain of Proline dehydrogenase UNDKW_5565 PF01619 Proline dehydrogenase UNDKW_5565 PF00171 Aldehyde dehydrogenase family UNDKW_5565 PF18327 Proline utilization A proline dehydrogenase N-terminal domain UNDKW_5566 PF01037 Lrp/AsnC ligand binding domain UNDKW_5567 PF01810 LysE type translocator UNDKW_5570 PF00501 AMP-binding enzyme UNDKW_5572 PF02424 ApbE family UNDKW_5575 PF00578 AhpC/TSA family UNDKW_5576 PF02627 Carboxymuconolactone decarboxylase family UNDKW_5578 PF06580 Histidine kinase UNDKW_5578 PF07694 5TMR of 5TMR-LYT UNDKW_5579 PF00072 Response regulator receiver domain UNDKW_5579 PF04397 LytTr DNA-binding domain UNDKW_5583 PF06580 Histidine kinase UNDKW_5583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5584 PF00072 Response regulator receiver domain UNDKW_5584 PF04397 LytTr DNA-binding domain UNDKW_5585 PF01965 DJ-1/PfpI family UNDKW_5585 PF12833 Helix-turn-helix domain UNDKW_5586 PF01965 DJ-1/PfpI family UNDKW_5586 PF12833 Helix-turn-helix domain UNDKW_5594 PF00905 Penicillin binding protein transpeptidase domain UNDKW_5594 PF00912 Transglycosylase UNDKW_5594 PF06832 Penicillin-Binding Protein C-terminus Family UNDKW_5595 PF01835 MG2 domain UNDKW_5595 PF07703 Alpha-2-macroglobulin bait region domain UNDKW_5595 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain UNDKW_5595 PF11974 Bacterial alpha-2-macroglobulin MG3 domain UNDKW_5595 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain UNDKW_5595 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain UNDKW_5595 PF17962 Bacterial macroglobulin domain 6 UNDKW_5595 PF00207 Alpha-2-macroglobulin family UNDKW_5600 PF00677 Lumazine binding domain UNDKW_5601 PF00989 PAS fold UNDKW_5601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5601 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5602 PF03466 LysR substrate binding domain UNDKW_5606 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain UNDKW_5606 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain UNDKW_5607 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UNDKW_5607 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UNDKW_5608 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5608 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5608 PF00563 EAL domain UNDKW_5615 PF00155 Aminotransferase class I and II UNDKW_5617 PF08021 Siderophore-interacting FAD-binding domain UNDKW_5617 PF04954 Siderophore-interacting protein UNDKW_5618 PF03466 LysR substrate binding domain UNDKW_5618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5619 PF13378 Enolase C-terminal domain-like UNDKW_5621 PF00155 Aminotransferase class I and II UNDKW_5623 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5623 PF00563 EAL domain UNDKW_5623 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5624 PF03814 Potassium-transporting ATPase A subunit UNDKW_5626 PF02669 K+-transporting ATPase, c chain UNDKW_5627 PF02702 Osmosensitive K+ channel His kinase sensor domain UNDKW_5627 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5627 PF13492 GAF domain UNDKW_5627 PF13493 Domain of unknown function (DUF4118) UNDKW_5628 PF00486 Transcriptional regulatory protein, C terminal UNDKW_5628 PF00072 Response regulator receiver domain UNDKW_5633 PF00701 Dihydrodipicolinate synthetase family UNDKW_5635 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5635 PF00072 Response regulator receiver domain UNDKW_5635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5635 PF09456 RcsC Alpha-Beta-Loop (ABL) UNDKW_5636 PF00005 ABC transporter UNDKW_5636 PF08402 TOBE domain UNDKW_5637 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_5641 PF00486 Transcriptional regulatory protein, C terminal UNDKW_5641 PF00072 Response regulator receiver domain UNDKW_5642 PF08521 Two-component sensor kinase N-terminal UNDKW_5642 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5642 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5646 PF06969 HemN C-terminal domain UNDKW_5655 PF00704 Glycosyl hydrolases family 18 UNDKW_5656 PF04102 SlyX UNDKW_5658 PF07687 Peptidase dimerisation domain UNDKW_5658 PF01546 Peptidase family M20/M25/M40 UNDKW_5660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5660 PF03466 LysR substrate binding domain UNDKW_5661 PF00576 HIUase/Transthyretin family UNDKW_5662 PF01546 Peptidase family M20/M25/M40 UNDKW_5662 PF07687 Peptidase dimerisation domain UNDKW_5664 PF00860 Permease family UNDKW_5665 PF01979 Amidohydrolase family UNDKW_5672 PF04397 LytTr DNA-binding domain UNDKW_5672 PF00072 Response regulator receiver domain UNDKW_5673 PF06580 Histidine kinase UNDKW_5673 PF00672 HAMP domain UNDKW_5673 PF02743 Cache domain UNDKW_5673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5675 PF08453 Peptidase family M9 N-terminal UNDKW_5675 PF01752 Collagenase UNDKW_5677 PF02887 Pyruvate kinase, alpha/beta domain UNDKW_5677 PF00224 Pyruvate kinase, barrel domain UNDKW_5678 PF13660 Domain of unknown function (DUF4147) UNDKW_5678 PF05161 MOFRL family UNDKW_5679 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UNDKW_5679 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UNDKW_5680 PF01261 Xylose isomerase-like TIM barrel UNDKW_5681 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UNDKW_5681 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UNDKW_5681 PF00205 Thiamine pyrophosphate enzyme, central domain UNDKW_5682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5682 PF03466 LysR substrate binding domain UNDKW_5683 PF00860 Permease family UNDKW_5686 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5686 PF03466 LysR substrate binding domain UNDKW_5689 PF00797 N-acetyltransferase UNDKW_5691 PF00270 DEAD/DEAH box helicase UNDKW_5691 PF03880 DbpA RNA binding domain UNDKW_5691 PF00271 Helicase conserved C-terminal domain UNDKW_5692 PF00413 Matrixin UNDKW_5692 PF08548 Peptidase M10 serralysin C terminal UNDKW_5692 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UNDKW_5695 PF12833 Helix-turn-helix domain UNDKW_5696 PF00175 Oxidoreductase NAD-binding domain UNDKW_5696 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_5698 PF10459 Peptidase S46 UNDKW_5700 PF00990 Diguanylate cyclase, GGDEF domain UNDKW_5700 PF00563 EAL domain UNDKW_5700 PF03707 Bacterial signalling protein N terminal repeat UNDKW_5705 PF00072 Response regulator receiver domain UNDKW_5706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5706 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5706 PF00989 PAS fold UNDKW_5707 PF02954 Bacterial regulatory protein, Fis family UNDKW_5707 PF00072 Response regulator receiver domain UNDKW_5707 PF00158 Sigma-54 interaction domain UNDKW_5708 PF00072 Response regulator receiver domain UNDKW_5709 PF00580 UvrD/REP helicase N-terminal domain UNDKW_5709 PF13361 UvrD-like helicase C-terminal domain UNDKW_5713 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UNDKW_5713 PF08548 Peptidase M10 serralysin C terminal UNDKW_5719 PF00675 Insulinase (Peptidase family M16) UNDKW_5719 PF05193 Peptidase M16 inactive domain UNDKW_5721 PF04247 Invasion gene expression up-regulator, SirB UNDKW_5722 PF01425 Amidase UNDKW_5723 PF05199 GMC oxidoreductase UNDKW_5723 PF00732 GMC oxidoreductase UNDKW_5724 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term UNDKW_5724 PF12833 Helix-turn-helix domain UNDKW_5725 PF00672 HAMP domain UNDKW_5725 PF00989 PAS fold UNDKW_5725 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5727 PF11799 impB/mucB/samB family C-terminal domain UNDKW_5727 PF00817 impB/mucB/samB family UNDKW_5729 PF05193 Peptidase M16 inactive domain UNDKW_5729 PF00675 Insulinase (Peptidase family M16) UNDKW_5731 PF00593 TonB dependent receptor UNDKW_5731 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5733 PF00593 TonB dependent receptor UNDKW_5733 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5734 PF02203 Tar ligand binding domain homologue UNDKW_5734 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5734 PF00672 HAMP domain UNDKW_5736 PF07690 Major Facilitator Superfamily UNDKW_5737 PF12833 Helix-turn-helix domain UNDKW_5737 PF02311 AraC-like ligand binding domain UNDKW_5738 PF01432 Peptidase family M3 UNDKW_5740 PF07690 Major Facilitator Superfamily UNDKW_5741 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5742 PF00730 HhH-GPD superfamily base excision DNA repair protein UNDKW_5742 PF12833 Helix-turn-helix domain UNDKW_5742 PF06029 AlkA N-terminal domain UNDKW_5742 PF02805 Metal binding domain of Ada UNDKW_5743 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UNDKW_5743 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UNDKW_5746 PF00884 Sulfatase UNDKW_5747 PF03466 LysR substrate binding domain UNDKW_5747 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5748 PF02803 Thiolase, C-terminal domain UNDKW_5748 PF00108 Thiolase, N-terminal domain UNDKW_5751 PF00326 Prolyl oligopeptidase family UNDKW_5756 PF03466 LysR substrate binding domain UNDKW_5756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5758 PF01139 tRNA-splicing ligase RtcB UNDKW_5759 PF00854 POT family UNDKW_5762 PF02203 Tar ligand binding domain homologue UNDKW_5762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5762 PF00672 HAMP domain UNDKW_5766 PF00072 Response regulator receiver domain UNDKW_5766 PF00486 Transcriptional regulatory protein, C terminal UNDKW_5767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5767 PF02743 Cache domain UNDKW_5767 PF00672 HAMP domain UNDKW_5767 PF06580 Histidine kinase UNDKW_5768 PF04397 LytTr DNA-binding domain UNDKW_5768 PF00072 Response regulator receiver domain UNDKW_5769 PF01026 TatD related DNase UNDKW_5774 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain UNDKW_5774 PF02129 X-Pro dipeptidyl-peptidase (S15 family) UNDKW_5774 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal UNDKW_5778 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UNDKW_5785 PF01435 Peptidase family M48 UNDKW_5786 PF03466 LysR substrate binding domain UNDKW_5786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5788 PF03880 DbpA RNA binding domain UNDKW_5788 PF00270 DEAD/DEAH box helicase UNDKW_5788 PF00271 Helicase conserved C-terminal domain UNDKW_5789 PF00248 Aldo/keto reductase family UNDKW_5790 PF00440 Bacterial regulatory proteins, tetR family UNDKW_5791 PF00128 Alpha amylase, catalytic domain UNDKW_5791 PF02903 Alpha amylase, N-terminal ig-like domain UNDKW_5791 PF16657 Maltogenic Amylase, C-terminal domain UNDKW_5794 PF04389 Peptidase family M28 UNDKW_5794 PF02225 PA domain UNDKW_5797 PF05088 Bacterial NAD-glutamate dehydrogenase UNDKW_5800 PF05649 Peptidase family M13 UNDKW_5800 PF01431 Peptidase family M13 UNDKW_5801 PF00072 Response regulator receiver domain UNDKW_5801 PF04397 LytTr DNA-binding domain UNDKW_5802 PF06580 Histidine kinase UNDKW_5802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5802 PF07694 5TMR of 5TMR-LYT UNDKW_5803 PF01799 [2Fe-2S] binding domain UNDKW_5803 PF00111 2Fe-2S iron-sulfur cluster binding domain UNDKW_5804 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UNDKW_5804 PF00034 Cytochrome c UNDKW_5804 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase UNDKW_5809 PF01451 Low molecular weight phosphotyrosine protein phosphatase UNDKW_5811 PF08460 Bacterial SH3 domain UNDKW_5811 PF01551 Peptidase family M23 UNDKW_5812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5812 PF07694 5TMR of 5TMR-LYT UNDKW_5812 PF06580 Histidine kinase UNDKW_5813 PF04397 LytTr DNA-binding domain UNDKW_5813 PF00072 Response regulator receiver domain UNDKW_5814 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UNDKW_5815 PF00873 AcrB/AcrD/AcrF family UNDKW_5816 PF00296 Luciferase-like monooxygenase UNDKW_5817 PF10127 RNA repair pathway DNA polymerase beta family UNDKW_5823 PF00686 Starch binding domain UNDKW_5823 PF02806 Alpha amylase, C-terminal all-beta domain UNDKW_5823 PF00128 Alpha amylase, catalytic domain UNDKW_5824 PF00686 Starch binding domain UNDKW_5824 PF02806 Alpha amylase, C-terminal all-beta domain UNDKW_5824 PF00128 Alpha amylase, catalytic domain UNDKW_5829 PF04337 Protein of unknown function, DUF480 UNDKW_5830 PF02463 RecF/RecN/SMC N terminal domain UNDKW_5832 PF13421 SPFH domain-Band 7 family UNDKW_5838 PF07690 Major Facilitator Superfamily UNDKW_5840 PF00528 Binding-protein-dependent transport system inner membrane component UNDKW_5842 PF03009 Glycerophosphoryl diester phosphodiesterase family UNDKW_5843 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UNDKW_5844 PF00440 Bacterial regulatory proteins, tetR family UNDKW_5844 PF16925 Tetracyclin repressor-like, C-terminal domain UNDKW_5845 PF00696 Amino acid kinase family UNDKW_5845 PF13840 ACT domain UNDKW_5845 PF00742 Homoserine dehydrogenase UNDKW_5845 PF03447 Homoserine dehydrogenase, NAD binding domain UNDKW_5845 PF01842 ACT domain UNDKW_5848 PF00069 Protein kinase domain UNDKW_5850 PF01047 MarR family UNDKW_5853 PF00141 Peroxidase UNDKW_5855 PF01494 FAD binding domain UNDKW_5859 PF00875 DNA photolyase UNDKW_5859 PF03441 FAD binding domain of DNA photolyase UNDKW_5860 PF03441 FAD binding domain of DNA photolyase UNDKW_5860 PF00875 DNA photolyase UNDKW_5861 PF08212 Lipocalin-like domain UNDKW_5863 PF02203 Tar ligand binding domain homologue UNDKW_5863 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5863 PF00672 HAMP domain UNDKW_5864 PF02203 Tar ligand binding domain homologue UNDKW_5864 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UNDKW_5864 PF00672 HAMP domain UNDKW_5869 PF00512 His Kinase A (phospho-acceptor) domain UNDKW_5869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UNDKW_5869 PF00497 Bacterial extracellular solute-binding proteins, family 3 UNDKW_5871 PF00144 Beta-lactamase UNDKW_5878 PF02608 ABC transporter substrate-binding protein PnrA-like UNDKW_5879 PF03466 LysR substrate binding domain UNDKW_5879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UNDKW_5880 PF13230 Glutamine amidotransferases class-II UNDKW_5884 PF00067 Cytochrome P450 UNDKW_5887 PF01926 50S ribosome-binding GTPase UNDKW_5887 PF10396 GTP-binding protein TrmE N-terminus UNDKW_5887 PF12631 MnmE helical domain UNDKW_5888 PF02096 60Kd inner membrane protein UNDKW_5888 PF14849 YidC periplasmic domain UNDKW_5889 PF00825 Ribonuclease P UNDKW_5890 PF00468 Ribosomal protein L34 UNDKW_5891 PF02311 AraC-like ligand binding domain UNDKW_5891 PF12833 Helix-turn-helix domain UNDKW_5892 PF00005 ABC transporter UNDKW_5892 PF00664 ABC transporter transmembrane region UNDKW_5894 PF00005 ABC transporter UNDKW_5894 PF04954 Siderophore-interacting protein UNDKW_5894 PF08021 Siderophore-interacting FAD-binding domain UNDKW_5894 PF00664 ABC transporter transmembrane region UNDKW_5895 PF01494 FAD binding domain UNDKW_5896 PF00975 Thioesterase domain UNDKW_5898 PF07715 TonB-dependent Receptor Plug Domain UNDKW_5898 PF00593 TonB dependent receptor UNDKW_5899 PF08240 Alcohol dehydrogenase GroES-like domain UNDKW_5899 PF00698 Acyl transferase domain UNDKW_5899 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_5899 PF09277 Erythronolide synthase, docking UNDKW_5899 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_5899 PF08659 KR domain UNDKW_5899 PF00550 Phosphopantetheine attachment site UNDKW_5899 PF14765 Polyketide synthase dehydratase UNDKW_5899 PF08990 Erythronolide synthase docking UNDKW_5899 PF16197 Ketoacyl-synthetase C-terminal extension UNDKW_5900 PF00550 Phosphopantetheine attachment site UNDKW_5900 PF08242 Methyltransferase domain UNDKW_5900 PF00668 Condensation domain UNDKW_5900 PF00501 AMP-binding enzyme UNDKW_5901 PF02801 Beta-ketoacyl synthase, C-terminal domain UNDKW_5901 PF00698 Acyl transferase domain UNDKW_5901 PF16197 Ketoacyl-synthetase C-terminal extension UNDKW_5901 PF00109 Beta-ketoacyl synthase, N-terminal domain UNDKW_5901 PF00668 Condensation domain UNDKW_5901 PF00550 Phosphopantetheine attachment site UNDKW_5904 PF00975 Thioesterase domain UNDKW_5915 PF03050 Transposase IS66 family UNDKW_5915 PF13817 IS66 C-terminal element UNDKW_5915 PF13007 Transposase C of IS166 homeodomain UNDKW_5915 PF13005 zinc-finger binding domain of transposase IS66 UNDKW_5917 PF17762 HTH domain found in ParB protein UNDKW_5917 PF02195 ParB-like nuclease domain UNDKW_5919 PF02899 Phage integrase, N-terminal SAM-like domain UNDKW_5919 PF00589 Phage integrase family UNDKW_5920 PF07804 HipA-like C-terminal domain UNDKW_5920 PF13657 HipA N-terminal domain UNDKW_5940 PF01527 Transposase UNDKW_5941 PF13276 HTH-like domain UNDKW_5941 PF00665 Integrase core domain UNDKW_5941 PF13333 Integrase core domain UNDKW_5942 PF01348 Type II intron maturase UNDKW_5942 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) UNDKW_5943 PF13276 HTH-like domain UNDKW_5943 PF00665 Integrase core domain UNDKW_5943 PF13333 Integrase core domain UNDKW_5945 PF13340 Putative transposase of IS4/5 family (DUF4096) UNDKW_5958 PF13333 Integrase core domain UNDKW_5958 PF13276 HTH-like domain UNDKW_5958 PF00665 Integrase core domain UNDKW_5959 PF13333 Integrase core domain UNDKW_5959 PF13276 HTH-like domain UNDKW_5959 PF00665 Integrase core domain UNDKW_5960 PF01527 Transposase UNDKW_5970 PF00004 ATPase family associated with various cellular activities (AAA) UNDKW_t007 PF01121 Dephospho-CoA kinase