locus-tag class description UP3_c0003 PF00137 ATP synthase subunit C UP3_c0005 PF00213 ATP synthase delta (OSCP) subunit UP3_c0006 PF00213 ATP synthase delta (OSCP) subunit UP3_c0009 PF00231 ATP synthase UP3_c0011 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UP3_c0041 PF12161 HsdM N-terminal domain UP3_c0041 PF02384 N-6 DNA Methylase UP3_c0045 PF00005 ABC transporter UP3_c0049 PF02575 YbaB/EbfC DNA-binding family UP3_c0052 PF01966 HD domain UP3_c0058 PF00712 DNA polymerase III beta subunit, N-terminal domain UP3_c0058 PF02768 DNA polymerase III beta subunit, C-terminal domain UP3_c0059 PF01195 Peptidyl-tRNA hydrolase UP3_c0068 PF00005 ABC transporter UP3_c0078 PF01668 SmpB protein UP3_c0094 PF04193 PQ loop repeat UP3_c0095 PF04193 PQ loop repeat UP3_c0105 PF00575 S1 RNA binding domain UP3_c0105 PF17674 HHH domain UP3_c0105 PF09371 Tex-like protein N-terminal domain UP3_c0105 PF16921 Tex protein YqgF-like domain UP3_c0114 PF02223 Thymidylate kinase UP3_c0116 PF12631 MnmE helical domain UP3_c0116 PF01926 50S ribosome-binding GTPase UP3_c0116 PF10396 GTP-binding protein TrmE N-terminus UP3_c0117 PF01026 TatD related DNase UP3_c0119 PF00005 ABC transporter UP3_c0123 PF00542 Ribosomal protein L7/L12 C-terminal domain UP3_c0123 PF16320 Ribosomal protein L7/L12 dimerisation domain UP3_c0124 PF00466 Ribosomal protein L10 UP3_c0127 PF02502 Ribose/Galactose Isomerase UP3_c0129 PF17827 PrmC N-terminal domain UP3_c0129 PF05175 Methyltransferase small domain UP3_c0131 PF01197 Ribosomal protein L31 UP3_c0133 PF00468 Ribosomal protein L34 UP3_c0134 PF00825 Ribonuclease P UP3_c0161 PF00380 Ribosomal protein S9/S16 UP3_c0170 PF01746 tRNA (Guanine-1)-methyltransferase UP3_c0171 PF01245 Ribosomal protein L19 UP3_c0183 PF01250 Ribosomal protein S6 UP3_c0185 PF01084 Ribosomal protein S18 UP3_c0186 PF01281 Ribosomal protein L9, N-terminal domain UP3_c0186 PF03948 Ribosomal protein L9, C-terminal domain UP3_c0195 PF00298 Ribosomal protein L11, RNA binding domain UP3_c0195 PF03946 Ribosomal protein L11, N-terminal domain UP3_c0196 PF00687 Ribosomal protein L1p/L10e family UP3_c0203 PF00471 Ribosomal protein L33 UP3_c0211 PF00164 Ribosomal protein S12/S23 UP3_c0230 PF00550 Phosphopantetheine attachment site UP3_c0246 PF02130 Uncharacterized protein family UPF0054 UP3_c0248 PF00156 Phosphoribosyl transferase domain UP3_c0270 PF01420 Type I restriction modification DNA specificity domain UP3_c0278 PF01926 50S ribosome-binding GTPase UP3_c0283 PF02911 Formyl transferase, C-terminal domain UP3_c0283 PF00551 Formyl transferase UP3_c0286 PF02540 NAD synthase UP3_c0290 PF00834 Ribulose-phosphate 3 epimerase family UP3_c0298 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP3_c0298 PF05491 RuvB C-terminal winged helix domain UP3_c0298 PF17864 RuvB AAA lid domain UP3_c0300 PF01728 FtsJ-like methyltransferase UP3_c0300 PF01479 S4 domain UP3_c0302 PF00547 Urease, gamma subunit UP3_c0305 PF02814 UreE urease accessory protein, N-terminal domain UP3_c0305 PF05194 UreE urease accessory protein, C-terminal domain UP3_c0317 PF02568 Thiamine biosynthesis protein (ThiI) UP3_c0317 PF02926 THUMP domain UP3_c0328 PF01556 DnaJ C terminal domain UP3_c0328 PF00226 DnaJ domain UP3_c0328 PF00684 DnaJ central domain UP3_c0329 PF01025 GrpE UP3_c0351 PF02381 MraZ protein, putative antitoxin-like UP3_c0360 PF07198 Protein of unknown function (DUF1410) UP3_c0364 PF03652 Holliday junction resolvase UP3_c0382 PF06574 FAD synthetase UP3_c0382 PF01687 Riboflavin kinase UP3_c0392 PF02616 Segregation and condensation protein ScpA UP3_c0395 PF02224 Cytidylate kinase UP3_c0400 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UP3_c0400 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UP3_c0404 PF01783 Ribosomal L32p protein family UP3_c0412 PF00588 SpoU rRNA Methylase family UP3_c0412 PF08032 RNA 2'-O ribose methyltransferase substrate binding UP3_c0415 PF03144 Elongation factor Tu domain 2 UP3_c0415 PF00009 Elongation factor Tu GTP binding domain UP3_c0415 PF00679 Elongation factor G C-terminus UP3_c0415 PF06421 GTP-binding protein LepA C-terminus UP3_c0425 PF01479 S4 domain UP3_c0425 PF00849 RNA pseudouridylate synthase UP3_c0426 PF00814 Glycoprotease family UP3_c0428 PF01649 Ribosomal protein S20 UP3_c0432 PF01261 Xylose isomerase-like TIM barrel UP3_c0452 PF00216 Bacterial DNA-binding protein UP3_c0454 PF05343 M42 glutamyl aminopeptidase UP3_c0457 PF01165 Ribosomal protein S21 UP3_c0463 PF01230 HIT domain UP3_c0467 PF00588 SpoU rRNA Methylase family UP3_c0470 PF01926 50S ribosome-binding GTPase UP3_c0471 PF03672 Uncharacterised protein family (UPF0154) UP3_c0474 PF09186 Domain of unknown function (DUF1949) UP3_c0474 PF01205 Uncharacterized protein family UPF0029 UP3_c0481 PF00416 Ribosomal protein S13/S18 UP3_c0482 PF00444 Ribosomal protein L36 UP3_c0483 PF01176 Translation initiation factor 1A / IF-1 UP3_c0487 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UP3_c0488 PF00333 Ribosomal protein S5, N-terminal domain UP3_c0488 PF03719 Ribosomal protein S5, C-terminal domain UP3_c0494 PF00467 KOW motif UP3_c0494 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UP3_c0495 PF00238 Ribosomal protein L14p/L23e UP3_c0497 PF00831 Ribosomal L29 protein UP3_c0503 PF00276 Ribosomal protein L23 UP3_c0505 PF00297 Ribosomal protein L3 UP3_c0506 PF00338 Ribosomal protein S10p/S20e UP3_c0508 PF01632 Ribosomal protein L35 UP3_c0516 PF01268 Formate--tetrahydrofolate ligase UP3_c0525 PF00829 Ribosomal prokaryotic L21 protein UP3_c0530 PF02734 DAK2 domain UP3_c0530 PF13684 Dihydroxyacetone kinase family UP3_c0533 PF00312 Ribosomal protein S15 UP3_c0541 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP3_c0541 PF16193 AAA C-terminal domain UP3_c0541 PF12002 MgsA AAA+ ATPase C terminal UP3_c0546 PF01588 Putative tRNA binding domain UP3_c0551 PF00224 Pyruvate kinase, barrel domain UP3_c0561 PF03960 ArsC family