locus-tag class description UPA3_0002 PF01197 Ribosomal protein L31 UPA3_0004 PF05175 Methyltransferase small domain UPA3_0004 PF17827 PrmC N-terminal domain UPA3_0006 PF02502 Ribose/Galactose Isomerase UPA3_0010 PF00466 Ribosomal protein L10 UPA3_0011 PF16320 Ribosomal protein L7/L12 dimerisation domain UPA3_0011 PF00542 Ribosomal protein L7/L12 C-terminal domain UPA3_0015 PF00005 ABC transporter UPA3_0017 PF01026 TatD related DNase UPA3_0018 PF01926 50S ribosome-binding GTPase UPA3_0018 PF12631 MnmE helical domain UPA3_0018 PF10396 GTP-binding protein TrmE N-terminus UPA3_0020 PF02223 Thymidylate kinase UPA3_0029 PF17674 HHH domain UPA3_0029 PF00575 S1 RNA binding domain UPA3_0029 PF09371 Tex-like protein N-terminal domain UPA3_0029 PF16921 Tex protein YqgF-like domain UPA3_0036 PF02384 N-6 DNA Methylase UPA3_0036 PF12950 TaqI-like C-terminal specificity domain UPA3_0040 PF04193 PQ loop repeat UPA3_0041 PF04193 PQ loop repeat UPA3_0057 PF01668 SmpB protein UPA3_0068 PF00005 ABC transporter UPA3_0077 PF01195 Peptidyl-tRNA hydrolase UPA3_0078 PF00712 DNA polymerase III beta subunit, N-terminal domain UPA3_0078 PF02768 DNA polymerase III beta subunit, C-terminal domain UPA3_0084 PF01966 HD domain UPA3_0088 PF02575 YbaB/EbfC DNA-binding family UPA3_0094 PF00005 ABC transporter UPA3_0099 PF01420 Type I restriction modification DNA specificity domain UPA3_0100 PF01420 Type I restriction modification DNA specificity domain UPA3_0101 PF02384 N-6 DNA Methylase UPA3_0101 PF12161 HsdM N-terminal domain UPA3_0134 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UPA3_0136 PF00231 ATP synthase UPA3_0139 PF00213 ATP synthase delta (OSCP) subunit UPA3_0140 PF00213 ATP synthase delta (OSCP) subunit UPA3_0142 PF00137 ATP synthase subunit C UPA3_0183 PF03960 ArsC family UPA3_0193 PF00224 Pyruvate kinase, barrel domain UPA3_0198 PF01588 Putative tRNA binding domain UPA3_0202 PF12002 MgsA AAA+ ATPase C terminal UPA3_0202 PF05496 Holliday junction DNA helicase RuvB P-loop domain UPA3_0202 PF16193 AAA C-terminal domain UPA3_0210 PF00312 Ribosomal protein S15 UPA3_0213 PF02734 DAK2 domain UPA3_0213 PF13684 Dihydroxyacetone kinase family UPA3_0219 PF00829 Ribosomal prokaryotic L21 protein UPA3_0228 PF01268 Formate--tetrahydrofolate ligase UPA3_0236 PF01632 Ribosomal protein L35 UPA3_0238 PF00338 Ribosomal protein S10p/S20e UPA3_0239 PF00297 Ribosomal protein L3 UPA3_0241 PF00276 Ribosomal protein L23 UPA3_0247 PF00831 Ribosomal L29 protein UPA3_0249 PF00238 Ribosomal protein L14p/L23e UPA3_0250 PF00467 KOW motif UPA3_0250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UPA3_0256 PF03719 Ribosomal protein S5, C-terminal domain UPA3_0256 PF00333 Ribosomal protein S5, N-terminal domain UPA3_0257 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UPA3_0261 PF01176 Translation initiation factor 1A / IF-1 UPA3_0262 PF00444 Ribosomal protein L36 UPA3_0263 PF00416 Ribosomal protein S13/S18 UPA3_0270 PF01205 Uncharacterized protein family UPF0029 UPA3_0270 PF09186 Domain of unknown function (DUF1949) UPA3_0273 PF03672 Uncharacterised protein family (UPF0154) UPA3_0274 PF01926 50S ribosome-binding GTPase UPA3_0276 PF00588 SpoU rRNA Methylase family UPA3_0281 PF01230 HIT domain UPA3_0287 PF01165 Ribosomal protein S21 UPA3_0290 PF05343 M42 glutamyl aminopeptidase UPA3_0292 PF00216 Bacterial DNA-binding protein UPA3_0321 PF01261 Xylose isomerase-like TIM barrel UPA3_0325 PF01649 Ribosomal protein S20 UPA3_0327 PF00814 Glycoprotease family UPA3_0328 PF01479 S4 domain UPA3_0328 PF00849 RNA pseudouridylate synthase UPA3_0339 PF06421 GTP-binding protein LepA C-terminus UPA3_0339 PF03144 Elongation factor Tu domain 2 UPA3_0339 PF00009 Elongation factor Tu GTP binding domain UPA3_0339 PF00679 Elongation factor G C-terminus UPA3_0342 PF08032 RNA 2'-O ribose methyltransferase substrate binding UPA3_0342 PF00588 SpoU rRNA Methylase family UPA3_0349 PF01783 Ribosomal L32p protein family UPA3_0353 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UPA3_0353 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UPA3_0358 PF02224 Cytidylate kinase UPA3_0361 PF02616 Segregation and condensation protein ScpA UPA3_0366 PF04816 tRNA (adenine(22)-N(1))-methyltransferase UPA3_0371 PF01687 Riboflavin kinase UPA3_0371 PF06574 FAD synthetase UPA3_0386 PF03652 Holliday junction resolvase UPA3_0391 PF07198 Protein of unknown function (DUF1410) UPA3_0401 PF02381 MraZ protein, putative antitoxin-like UPA3_0423 PF01025 GrpE UPA3_0424 PF00226 DnaJ domain UPA3_0424 PF00684 DnaJ central domain UPA3_0424 PF01556 DnaJ C terminal domain UPA3_0436 PF02568 Thiamine biosynthesis protein (ThiI) UPA3_0436 PF02926 THUMP domain UPA3_0450 PF02814 UreE urease accessory protein, N-terminal domain UPA3_0450 PF05194 UreE urease accessory protein, C-terminal domain UPA3_0453 PF00547 Urease, gamma subunit UPA3_0456 PF01479 S4 domain UPA3_0456 PF01728 FtsJ-like methyltransferase UPA3_0457 PF00817 impB/mucB/samB family UPA3_0457 PF11799 impB/mucB/samB family C-terminal domain UPA3_0458 PF05491 RuvB C-terminal winged helix domain UPA3_0458 PF17864 RuvB AAA lid domain UPA3_0458 PF05496 Holliday junction DNA helicase RuvB P-loop domain UPA3_0467 PF05496 Holliday junction DNA helicase RuvB P-loop domain UPA3_0467 PF17864 RuvB AAA lid domain UPA3_0467 PF05491 RuvB C-terminal winged helix domain UPA3_0475 PF00834 Ribulose-phosphate 3 epimerase family UPA3_0479 PF02540 NAD synthase UPA3_0482 PF00551 Formyl transferase UPA3_0482 PF02911 Formyl transferase, C-terminal domain UPA3_0487 PF01926 50S ribosome-binding GTPase UPA3_0506 PF00156 Phosphoribosyl transferase domain UPA3_0508 PF02130 Uncharacterized protein family UPF0054 UPA3_0535 PF00550 Phosphopantetheine attachment site UPA3_0562 PF00164 Ribosomal protein S12/S23 UPA3_0571 PF00471 Ribosomal protein L33 UPA3_0578 PF00687 Ribosomal protein L1p/L10e family UPA3_0579 PF03946 Ribosomal protein L11, N-terminal domain UPA3_0579 PF00298 Ribosomal protein L11, RNA binding domain UPA3_0588 PF01281 Ribosomal protein L9, N-terminal domain UPA3_0588 PF03948 Ribosomal protein L9, C-terminal domain UPA3_0589 PF01084 Ribosomal protein S18 UPA3_0591 PF01250 Ribosomal protein S6 UPA3_0605 PF01245 Ribosomal protein L19 UPA3_0606 PF01746 tRNA (Guanine-1)-methyltransferase UPA3_0615 PF00380 Ribosomal protein S9/S16 UPA3_0643 PF00825 Ribonuclease P UPA3_0644 PF00468 Ribosomal protein L34