UPA3_0002	PF01197	Ribosomal protein L31
UPA3_0004	PF05175	Methyltransferase small domain
UPA3_0006	PF02502	Ribose/Galactose Isomerase
UPA3_0010	PF00466	Ribosomal protein L10
UPA3_0011	PF00542	Ribosomal protein L7/L12 C-terminal domain
UPA3_0011	PF16320	UPA3_0011
UPA3_0015	PF00005	ABC transporter
UPA3_0017	PF01026	TatD related DNase
UPA3_0018	PF01926	50S ribosome-binding GTPase
UPA3_0018	PF10396	GTP-binding protein TrmE N-terminus
UPA3_0018	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
UPA3_0019	PF13177	DNA polymerase III, delta subunit
UPA3_0020	PF02223	Thymidylate kinase
UPA3_0029	PF00575	S1 RNA binding domain
UPA3_0029	PF09371	Tex-like protein N-terminal domain
UPA3_0029	PF12836	Helix-hairpin-helix motif
UPA3_0029	PF16921	UPA3_0029
UPA3_0036	PF07669	Eco57I restriction-modification methylase
UPA3_0040	PF04193	PQ loop repeat
UPA3_0057	PF01668	SmpB protein
UPA3_0066	PF00392	Bacterial regulatory proteins, gntR family
UPA3_0068	PF00005	ABC transporter
UPA3_0077	PF01195	Peptidyl-tRNA hydrolase
UPA3_0078	PF00712	DNA polymerase III beta subunit, N-terminal domain
UPA3_0078	PF02767	DNA polymerase III beta subunit, central domain
UPA3_0078	PF02768	DNA polymerase III beta subunit, C-terminal domain
UPA3_0084	PF01966	HD domain
UPA3_0088	PF02575	YbaB/EbfC DNA-binding family
UPA3_0091	PF03235	UPA3_0091
UPA3_0094	PF00005	ABC transporter
UPA3_0099	PF01420	Type I restriction modification DNA specificity domain
UPA3_0100	PF01420	Type I restriction modification DNA specificity domain
UPA3_0101	PF02384	N-6 DNA Methylase
UPA3_0122	PF14681	Uracil phosphoribosyltransferase
UPA3_0134	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
UPA3_0136	PF00231	ATP synthase
UPA3_0139	PF00213	ATP synthase delta (OSCP) subunit
UPA3_0140	PF00213	ATP synthase delta (OSCP) subunit
UPA3_0142	PF00137	ATP synthase subunit C
UPA3_0183	PF03960	ArsC family
UPA3_0193	PF00224	Pyruvate kinase, barrel domain
UPA3_0198	PF01588	Putative tRNA binding domain
UPA3_0202	PF05496	Holliday junction DNA helicase ruvB N-terminus
UPA3_0202	PF12002	MgsA AAA+ ATPase C terminal
UPA3_0202	PF16193	UPA3_0202
UPA3_0208	PF00403	Heavy-metal-associated domain
UPA3_0210	PF00312	Ribosomal protein S15
UPA3_0213	PF02734	DAK2 domain
UPA3_0213	PF13684	Dihydroxyacetone kinase family
UPA3_0219	PF00829	Ribosomal prokaryotic L21 protein
UPA3_0222	PF13672	Protein phosphatase 2C
UPA3_0228	PF01268	Formate--tetrahydrofolate ligase
UPA3_0236	PF01632	Ribosomal protein L35
UPA3_0238	PF00338	Ribosomal protein S10p/S20e
UPA3_0239	PF00297	Ribosomal protein L3
UPA3_0241	PF00276	Ribosomal protein L23
UPA3_0247	PF00831	Ribosomal L29 protein
UPA3_0249	PF00238	Ribosomal protein L14p/L23e
UPA3_0250	PF00467	KOW motif
UPA3_0250	PF17136	UPA3_0250
UPA3_0256	PF00333	Ribosomal protein S5, N-terminal domain
UPA3_0256	PF03719	Ribosomal protein S5, C-terminal domain
UPA3_0257	PF00828	Ribosomal protein L18e/L15
UPA3_0261	PF01176	Translation initiation factor 1A / IF-1
UPA3_0262	PF00444	Ribosomal protein L36
UPA3_0263	PF00416	Ribosomal protein S13/S18
UPA3_0270	PF01205	Uncharacterized protein family UPF0029
UPA3_0273	PF03672	UPA3_0273
UPA3_0274	PF01926	50S ribosome-binding GTPase
UPA3_0276	PF00588	SpoU rRNA Methylase family
UPA3_0281	PF01230	HIT domain
UPA3_0287	PF01165	Ribosomal protein S21
UPA3_0290	PF05343	M42 glutamyl aminopeptidase
UPA3_0292	PF00216	Bacterial DNA-binding protein
UPA3_0321	PF01261	Xylose isomerase-like TIM barrel
UPA3_0325	PF01649	Ribosomal protein S20
UPA3_0327	PF00814	Glycoprotease family
UPA3_0328	PF00849	RNA pseudouridylate synthase
UPA3_0334	PF04296	Protein of unknown function (DUF448)
UPA3_0339	PF00009	Elongation factor Tu GTP binding domain
UPA3_0339	PF00679	Elongation factor G C-terminus
UPA3_0339	PF03144	Elongation factor Tu domain 2
UPA3_0339	PF06421	GTP-binding protein LepA C-terminus
UPA3_0342	PF00588	SpoU rRNA Methylase family
UPA3_0342	PF08032	RNA 2'-O ribose methyltransferase substrate binding
UPA3_0349	PF01783	Ribosomal L32p protein family
UPA3_0353	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
UPA3_0358	PF02224	Cytidylate kinase
UPA3_0361	PF02616	ScpA/B protein
UPA3_0366	PF04816	Family of unknown function (DUF633)
UPA3_0371	PF01687	Riboflavin kinase
UPA3_0371	PF06574	FAD synthetase
UPA3_0386	PF03652	Uncharacterised protein family (UPF0081)
UPA3_0391	PF07198	UPA3_0391
UPA3_0401	PF02381	MraZ protein
UPA3_0423	PF01025	GrpE
UPA3_0424	PF00226	DnaJ domain
UPA3_0424	PF00684	DnaJ central domain
UPA3_0424	PF01556	DnaJ C terminal domain
UPA3_0436	PF02568	Thiamine biosynthesis protein (ThiI)
UPA3_0436	PF02926	THUMP domain
UPA3_0442	PF11428	Protein of unknown function (DUF3196)
UPA3_0450	PF02814	UreE urease accessory protein, N-terminal domain
UPA3_0450	PF05194	UreE urease accessory protein, C-terminal domain
UPA3_0453	PF00547	Urease, gamma subunit
UPA3_0456	PF01479	S4 domain
UPA3_0456	PF01728	FtsJ-like methyltransferase
UPA3_0457	PF00817	impB/mucB/samB family
UPA3_0457	PF11799	impB/mucB/samB family C-terminal domain
UPA3_0458	PF05491	Holliday junction DNA helicase ruvB C-terminus
UPA3_0467	PF05491	Holliday junction DNA helicase ruvB C-terminus
UPA3_0467	PF05496	Holliday junction DNA helicase ruvB N-terminus
UPA3_0472	PF01592	NifU-like N terminal domain
UPA3_0475	PF00834	Ribulose-phosphate 3 epimerase family
UPA3_0479	PF02540	NAD synthase
UPA3_0482	PF00551	Formyl transferase
UPA3_0482	PF02911	Formyl transferase, C-terminal domain
UPA3_0487	PF01926	50S ribosome-binding GTPase
UPA3_0506	PF00156	Phosphoribosyl transferase domain
UPA3_0508	PF02130	Uncharacterized protein family UPF0054
UPA3_0510	PF02565	Recombination protein O C terminal
UPA3_0535	PF00550	Phosphopantetheine attachment site
UPA3_0562	PF00164	Ribosomal protein S12/S23
UPA3_0571	PF00471	Ribosomal protein L33
UPA3_0578	PF00687	Ribosomal protein L1p/L10e family
UPA3_0579	PF00298	Ribosomal protein L11, RNA binding domain
UPA3_0579	PF03946	Ribosomal protein L11, N-terminal domain
UPA3_0583	PF02686	Glu-tRNAGln amidotransferase C subunit
UPA3_0588	PF01281	Ribosomal protein L9, N-terminal domain
UPA3_0588	PF03948	Ribosomal protein L9, C-terminal domain
UPA3_0589	PF01084	Ribosomal protein S18
UPA3_0591	PF01250	Ribosomal protein S6
UPA3_0592	PF00583	Acetyltransferase (GNAT) family
UPA3_0605	PF01245	Ribosomal protein L19
UPA3_0606	PF01746	tRNA (Guanine-1)-methyltransferase
UPA3_0615	PF00380	Ribosomal protein S9/S16
UPA3_0619	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
UPA3_0626	PF00381	PTS HPr component phosphorylation site
UPA3_0643	PF00825	Ribonuclease P
UPA3_0644	PF00468	Ribosomal protein L34