locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
UPA3_0001	UPA3_0001	dnaA	dnaA	27	1400	+	chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308%3B match to protein family HMM PF08299%3B match to protein family HMM TIGR00362	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0001
UPA3_0002	UPA3_0002	rpmE	rpmE	1541	1828	+	ribosomal protein L31	identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0002
UPA3_0003	UPA3_0003	prfA	prfA	1961	3040	+	peptide chain release factor 1	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0003
UPA3_0004	UPA3_0004		UPA3_0004	3040	3912	+	methyltransferase%2C HemK family	identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0004
UPA3_0005	UPA3_0005		UPA3_0005	3899	4453	+	conserved hypothetical protein		gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0005
UPA3_0006	UPA3_0006		UPA3_0006	4457	4921	+	sugar-phosphate isomerase%2C RpiB/LacA/LacB family	identified by match to protein family HMM PF02502%3B match to protein family HMM TIGR00689	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0006
UPA3_0007	UPA3_0007		UPA3_0007	5017	5577	+	conserved hypothetical protein		gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0007
UPA3_0008	UPA3_0008		UPA3_0008	5580	6056	+	conserved hypothetical protein		gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0008
UPA3_0009	UPA3_0009	mgtE	mgtE	6201	7823	+	magnesium transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0009
UPA3_0010	UPA3_0010		UPA3_0010	7980	8480	+	50S ribosomal protein L10	identified by match to protein family HMM PF00466	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0010
UPA3_0011	UPA3_0011	rplL	rplL	8505	8870	+	ribosomal protein L7/L12	identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855	gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0011
UPA3_0012	UPA3_0012		UPA3_0012	9095	10645	-	putative membrane protein	identified by match to protein family HMM PF02608	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0012
UPA3_0013	UPA3_0013		UPA3_0013	11031	11960	-	ribose/galactose ABC transporter	identified by match to protein family HMM PF02653	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0013
UPA3_0014	UPA3_0014		UPA3_0014	11960	14170	-	ribose/galactose ABC transporter	identified by match to protein family HMM PF02653	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0014
UPA3_0015	UPA3_0015		UPA3_0015	14173	15780	-	methylgalactoside permease ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0015
UPA3_0016	UPA3_0016		UPA3_0016	15836	17410	-	putative membrane protein	identified by match to protein family HMM PF02608	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0016
UPA3_0017	UPA3_0017		UPA3_0017	17581	18378	-	hydrolase%2C TatD family	identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0017
UPA3_0018	UPA3_0018	trmE	trmE	18380	19696	-	tRNA modification GTPase TrmE	identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650	gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0018
UPA3_0019	UPA3_0019		UPA3_0019	19699	20493	-	DNA polymerase III delta subunit		gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0019
UPA3_0020	UPA3_0020	tmk	tmk	20494	21186	-	thymidylate kinase	identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0020
UPA3_0021	UPA3_0021		UPA3_0021	21167	22030	-	triacylglycerol lipase	identified by match to protein family HMM PF00561	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0021
UPA3_0022	UPA3_0022		UPA3_0022	22136	23158	-	ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0022
UPA3_0023	UPA3_0023		UPA3_0023	23159	24172	-	ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0023
UPA3_0024	UPA3_0024		UPA3_0024	24201	25601	-	putative ABC substrate-binding protein - iron		gene	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0024
UPA3_0025	UPA3_0025		UPA3_0025	25637	26740	-	ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0025
UPA3_0026	UPA3_0026		UPA3_0026	26907	27956	-	30S ribosomal protein S2	identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011	gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0026
UPA3_0027	UPA3_0027		UPA3_0027	28056	29027	-	putative ABC substrate-binding protein - iron		gene	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0027
UPA3_0028	UPA3_0028		UPA3_0028	29042	29788	-	putative ABC substrate-binding protein - iron		gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0028
UPA3_0029	UPA3_0029		UPA3_0029	29794	31914	-	S1 RNA binding domain protein	identified by match to protein family HMM PF00575	gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0029
UPA3_0030	UPA3_0030		UPA3_0030	32024	34267	+	conserved hypothetical protein		gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0030
UPA3_0031	UPA3_0031		UPA3_0031	34662	35426	+	putative membrane protein		gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0031
UPA3_0032	UPA3_0032		UPA3_0032	35518	36045	-	conserved hypothetical protein		gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0032
UPA3_0033	UPA3_0033		UPA3_0033	36053	36526	-	conserved hypothetical protein		gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0033
UPA3_0034	UPA3_0034		UPA3_0034	36576	37643	-	divergent AAA domain family	identified by match to protein family HMM PF04326	gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0034
UPA3_0035	UPA3_0035		UPA3_0035	37747	38487	-	conserved hypothetical protein		gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0035
UPA3_0036	UPA3_0036		UPA3_0036	38740	39573	-	conserved hypothetical protein		gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0036
UPA3_0037	UPA3_0037		UPA3_0037	40361	41749	+	divergent AAA domain family	identified by match to protein family HMM PF04326%3B match to protein family HMM PF08220	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0037
UPA3_0038	UPA3_0038	gidA	gidA	41825	43669	+	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136	gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0038
UPA3_0039	UPA3_0039	gidB	gidB	43662	44372	+	methyltransferase GidB	identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0039
UPA3_0040	UPA3_0040		UPA3_0040	44395	44757	+	PQ loop repeat family	identified by match to protein family HMM PF04193	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0040
UPA3_0041	UPA3_0041		UPA3_0041	44757	45173	+	conserved hypothetical protein		gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0041
UPA3_0042	UPA3_0042		UPA3_0042	45340	47856	+	lipoprotein		gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0042
UPA3_0043	UPA3_0043		UPA3_0043	47879	50227	+	conserved hypothetical protein		gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0043
UPA3_0044	UPA3_0044		UPA3_0044	50258	52762	+	putative lipoprotein	identified by match to protein family HMM PF04200	gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0044
UPA3_0045	UPA3_0045		UPA3_0045	52799	55174	+	conserved hypothetical protein		gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0045
UPA3_0046	UPA3_0046		UPA3_0046	55189	57792	+	putative lipoprotein		gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0046
UPA3_0047	UPA3_0047		UPA3_0047	57825	59312	+	putative membrane protein		gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0047
UPA3_0048	UPA3_0048		UPA3_0048	59299	59814	+	conserved hypothetical protein		gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0048
UPA3_0049	UPA3_0049		UPA3_0049	59817	60731	+	conserved hypothetical protein		gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0049
UPA3_0050	UPA3_0050		UPA3_0050	60721	61200	+	conserved hypothetical protein		gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0050
UPA3_0051	UPA3_0051		UPA3_0051	61190	63355	+	conserved hypothetical protein		gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0051
UPA3_0052	UPA3_0052		UPA3_0052	63371	64906	+	ATP synthase subunit alpha 2	identified by match to protein family HMM PF00006	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0052
UPA3_0053	UPA3_0053		UPA3_0053	64906	66270	+	ATP synthase F1%2C beta subunit family	identified by match to protein family HMM PF00006%3B match to protein family HMM TIGR01039	gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0053
UPA3_0054	UPA3_0054		UPA3_0054	66535	69951	+	membrane nuclease A - hypothetical	identified by match to protein family HMM PF03372	gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0054
UPA3_0055	UPA3_0055		UPA3_0055	70046	70270	+	conserved hypothetical protein	identified by similarity to SP:Q9EXD0	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0055
UPA3_0056	UPA3_0056	rnr	rnr	70271	72436	+	ribonuclease R	identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0056
UPA3_0057	UPA3_0057	smpB	smpB	72636	73061	+	SsrA-binding protein	identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0057
UPA3_0058	UPA3_0058		UPA3_0058	73081	74820	+	transport ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0058
UPA3_0059	UPA3_0059		UPA3_0059	74795	76591	+	transport ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0059
UPA3_0060	UPA3_0060		UPA3_0060	76651	77445	+	conserved hypothetical protein		gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0060
UPA3_0061	UPA3_0061	lysS	lysS	77555	79036	+	lysyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499	gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0061
UPA3_0062	UPA3_0062		UPA3_0062	79324	79800	-	nucleoside 2-deoxyribosyltransferase superfamily	identified by match to protein family HMM PF05014	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0062
UPA3_0063	UPA3_0063		UPA3_0063	79968	80234	-	conserved hypothetical protein		gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0063
UPA3_0064	UPA3_0064	pepF1	pepF1	80259	82085	-	oligoendopeptidase F	identified by match to protein family HMM PF01432%3B match to protein family HMM PF08439%3B match to protein family HMM TIGR00181	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0064
UPA3_0065	UPA3_0065		UPA3_0065	82173	83054	+	phosphotransacetylase	identified by match to protein family HMM PF01515	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0065
UPA3_0066	UPA3_0066		UPA3_0066	83101	83715	-	conserved hypothetical protein		gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0066
UPA3_0067	UPA3_0067		UPA3_0067	83753	84409	-	conserved hypothetical protein		gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0067
UPA3_0068	UPA3_0068		UPA3_0068	84500	85375	-	iron(III) dicitrate transport ATP-binding protein fecE	identified by match to protein family HMM PF00005	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0068
UPA3_0069	UPA3_0069		UPA3_0069	85380	86450	-	hemin transport system permease	identified by match to protein family HMM PF00950%3B match to protein family HMM PF01032	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0069
UPA3_0070	UPA3_0070		UPA3_0070	86469	88436	-	putative ABC substrate-binding protein - iron		gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0070
UPA3_0071	UPA3_0071		UPA3_0071	88669	89997	+	hemolysin	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0071
UPA3_0072	UPA3_0072		UPA3_0072	90015	91007	-	conserved hypothetical protein	identified by match to protein family HMM PF02650%3B match to protein family HMM TIGR00647	gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0072
UPA3_0073	UPA3_0073	trxB	trxB	90973	91902	-	thioredoxin-disulfide reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0073
UPA3_0074	UPA3_0074	lgt	lgt	91921	92928	-	prolipoprotein diacylglyceryl transferase	identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0074
UPA3_0075	UPA3_0075	hprK	hprK	92929	93855	-	HPr(Ser) kinase/phosphatase	identified by match to protein family HMM PF02603%3B match to protein family HMM PF07475	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0075
UPA3_0076	UPA3_0076	tilS	tilS	93870	94862	-	tRNA(Ile)-lysidine synthetase	identified by match to protein family HMM PF01171%3B match to protein family HMM TIGR02432	gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0076
UPA3_0077	UPA3_0077	pth	pth	94834	95394	-	peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447	gene	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0077
UPA3_0078	UPA3_0078	dnaN	dnaN	95616	96755	+	DNA polymerase III%2C beta subunit	identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663	gene	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0078
UPA3_0079	UPA3_0079	yaaA	yaaA	96893	97111	+	S4 domain protein YaaA	identified by match to protein family HMM TIGR02988	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0079
UPA3_0080	UPA3_0080	gyrB	gyrB	97123	99075	+	DNA gyrase%2C B subunit	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059	gene	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0080
UPA3_0081	UPA3_0081	gyrA	gyrA	99097	101619	+	DNA gyrase%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063	gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0081
UPA3_0082	UPA3_0082		UPA3_0082	101727	102197	+	competence/damage-inducible protein CinA C- domain	identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0082
UPA3_0083	UPA3_0083	recA	recA	102236	103240	+	protein RecA	identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012	gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0083
UPA3_0084	UPA3_0084		UPA3_0084	103272	104693	+	hdod domain family	identified by match to protein family HMM PF00013%3B match to protein family HMM PF01966%3B match to protein family HMM PF08668%3B match to protein family HMM TIGR00277	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0084
UPA3_0085	UPA3_0085		UPA3_0085	104720	104875	-	hypothetical protein	identified by glimmer%3B putative	gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0085
UPA3_0086	UPA3_0086		UPA3_0086	104892	105590	-	deoxyguanosine kinase		gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0086
UPA3_0087	UPA3_0087		UPA3_0087	105788	107581	+	DNA polymerase III subunits gamma and tau	identified by match to protein family HMM PF00004%3B match to protein family HMM TIGR02397	gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0087
UPA3_0088	UPA3_0088		UPA3_0088	107589	107888	+	conserved hypothetical protein	identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0088
UPA3_0089	UPA3_0089		UPA3_0089	107897	108502	+	recombination protein RecR	identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0089
UPA3_0090	UPA3_0090		UPA3_0090	108584	108826	+	conserved hypothetical protein		gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0090
UPA3_0091	UPA3_0091		UPA3_0091	108923	110626	+	protein of unknown function	identified by match to protein family HMM PF03235	gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0091
UPA3_0092	UPA3_0092	ffh	ffh	111242	112588	+	signal recognition particle protein	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0092
UPA3_0093	UPA3_0093		UPA3_0093	112800	114587	+	putative membrane protein		gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0093
UPA3_0094	UPA3_0094		UPA3_0094	114587	115297	+	ABC transporter	identified by match to protein family HMM PF00005	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0094
UPA3_0095	UPA3_0095		UPA3_0095	115419	118583	+	putative lipoprotein		gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0095
UPA3_0096	UPA3_0096		UPA3_0096	118730	118858	-	hypothetical protein	identified by glimmer%3B putative	gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0096
UPA3_0097	UPA3_0097		UPA3_0097	118970	119119	-	conserved domain protein	identified by similarity to GB:ABC77917.1	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0097
UPA3_0098	UPA3_0098	hsdR	hsdR	120188	123325	-	type I site-specific deoxyribonuclease%2C HsdR	identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0098
UPA3_0099	UPA3_0099		UPA3_0099	123346	123867	-	type I restriction modification DNA specificity family protein	identified by match to protein family HMM PF01420	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0099
UPA3_0100	UPA3_0100		UPA3_0100	124005	124214	-	conserved domain protein	identified by similarity to GB:AAT27773.1	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0100
UPA3_0101	UPA3_0101	hsdM	hsdM	124347	125393	+	type I restriction-modification system%2C M subunit	identified by match to protein family HMM PF02384	gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0101
UPA3_0102	UPA3_0102		UPA3_0102	125397	126302	+	type I restriction modification DNA specificity family protein	identified by match to protein family HMM PF01420	gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0102
UPA3_0103	UPA3_0103		UPA3_0103	126341	126904	+	conserved domain protein		gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0103
UPA3_0104	UPA3_0104		UPA3_0104	126942	127508	-	conserved hypothetical protein		gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0104
UPA3_0105	UPA3_0105	uvrA	uvrA	127734	130565	+	excinuclease ABC%2C A subunit	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0105
UPA3_0106	UPA3_0106		UPA3_0106	130570	132234	+	putative lipoprotein		gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0106
UPA3_0107	UPA3_0107	hpt	hpt	132261	132881	+	hypoxanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0107
UPA3_0108	UPA3_0108		UPA3_0108	132886	135051	+	ATP-dependent zinc metallopeptidase - cell division protein	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0108
UPA3_0109	UPA3_0109	serS	serS	135162	136418	+	seryl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0109
UPA3_0110	UPA3_0110		UPA3_0110	136821	138380	+	spermidine/putrescine transport ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0110
UPA3_0111	UPA3_0111		UPA3_0111	138364	139371	+	spermidine/putrescine transport system permease	identified by match to protein family HMM PF00528	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0111
UPA3_0112	UPA3_0112		UPA3_0112	139358	140212	+	spermidine/putrescine transport system permease	identified by match to protein family HMM PF00528	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0112
UPA3_0113	UPA3_0113		UPA3_0113	140216	142252	+	putative lipoprotein	identified by match to protein family HMM PF02030	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0113
UPA3_0114	UPA3_0114		UPA3_0114	142350	142952	+	conserved hypothetical protein		gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0114
UPA3_0115	UPA3_0115		UPA3_0115	143015	144142	+	conserved hypothetical protein		gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0115
UPA3_0116	UPA3_0116		UPA3_0116	144166	145113	+	pseudouridine synthase	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0116
UPA3_0117	UPA3_0117		UPA3_0117	145357	146887	+	small subunit ribosomal RNA		rRNA	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0117
UPA3_0118	UPA3_0118	rrf	rrf	150153	150256	+	5S ribosomal RNA		rRNA	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0118
UPA3_0119	UPA3_0119	folA	folA	150399	150869	+	dihydrofolate reductase	identified by match to protein family HMM PF00186	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0119
UPA3_0120	UPA3_0120		UPA3_0120	150877	151557	+	phosphoglycolate phosphatase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549	gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0120
UPA3_0121	UPA3_0121		UPA3_0121	151614	151687	+	tRNA-Gly		tRNA	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0121
UPA3_0122	UPA3_0122	upp	upp	151752	152375	-	uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01091	gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0122
UPA3_0123	UPA3_0123	tyrS	tyrS	152620	153867	-	tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0123
UPA3_0124	UPA3_0124		UPA3_0124	154006	154908	+	ABC Transporter	identified by match to protein family HMM PF00005	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0124
UPA3_0125	UPA3_0125	secA	secA	154925	157438	+	preprotein translocase%2C SecA subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF01043%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0125
UPA3_0126	UPA3_0126	uvrB	uvrB	157441	159441	+	excinuclease ABC%2C B subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0126
UPA3_0127	UPA3_0127	ligA	ligA	159525	161546	+	DNA ligase%2C NAD-dependent	identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575	gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0127
UPA3_0128	UPA3_0128		UPA3_0128	161783	162478	+	conserved hypothetical protein		gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0128
UPA3_0129	UPA3_0129	cysS	cysS	162492	163802	+	cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00435	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0129
UPA3_0130	UPA3_0130		UPA3_0130	163804	164523	+	RNA methyltransferase%2C TrmH family%2C group 3	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0130
UPA3_0131	UPA3_0131		UPA3_0131	164532	165716	-	putative lipoprotein		gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0131
UPA3_0132	UPA3_0132		UPA3_0132	165728	168982	-	conserved hypothetical protein		gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0132
UPA3_0133	UPA3_0133		UPA3_0133	169109	169414	-	conserved hypothetical protein		gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0133
UPA3_0134	UPA3_0134	atpC	atpC	169557	169967	-	ATP synthase F1%2C epsilon subunit	identified by match to protein family HMM PF02823%3B match to protein family HMM TIGR01216	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0134
UPA3_0135	UPA3_0135	atpD	atpD	169967	171361	-	ATP synthase F1%2C beta subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0135
UPA3_0136	UPA3_0136	atpG	atpG	171388	172248	-	ATP synthase F1%2C gamma subunit	identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0136
UPA3_0137	UPA3_0137		UPA3_0137	172250	173056	-	conserved hypothetical protein		gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0137
UPA3_0138	UPA3_0138		UPA3_0138	173056	175455	-	ATP synthase F1%2C alpha subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0138
UPA3_0139	UPA3_0139		UPA3_0139	175458	175757	-	ATP synthase delta subunit domain protein		gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0139
UPA3_0140	UPA3_0140	atpH	atpH	175767	176306	-	ATP synthase F1%2C delta subunit	identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0140
UPA3_0141	UPA3_0141	atpF	atpF	176310	176927	-	ATP synthase F0%2C B subunit	identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144	gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0141
UPA3_0142	UPA3_0142		UPA3_0142	176996	177325	-	ATP synthase F0%2C C subunit	identified by match to protein family HMM PF00137	gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0142
UPA3_0143	UPA3_0143	atpB	atpB	177374	178201	-	ATP synthase F0%2C A subunit	identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131	gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0143
UPA3_0144	UPA3_0144		UPA3_0144	178227	178601	-	conserved hypothetical - cytochrome B		gene	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0144
UPA3_0145	UPA3_0145		UPA3_0145	178899	179609	+	conserved hypothetical protein		gene	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0145
UPA3_0146	UPA3_0146		UPA3_0146	179671	182616	+	p115 protein	identified by match to protein family HMM PF02463%3B match to protein family HMM PF06470	gene	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0146
UPA3_0147	UPA3_0147	ftsY	ftsY	182619	183674	+	signal recognition particle-docking protein FtsY	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064	gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0147
UPA3_0148	UPA3_0148		UPA3_0148	183664	183963	+	YlxM family protein	identified by match to protein family HMM PF04297	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0148
UPA3_0149	UPA3_0149		UPA3_0149	184067	187834	-	conserved hypothetical protein		gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0149
UPA3_0150	UPA3_0150		UPA3_0150	188073	188151	+	tRNA-Ile		tRNA	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0150
UPA3_0151	UPA3_0151		UPA3_0151	188153	188230	+	tRNA-Ala		tRNA	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0151
UPA3_0152	UPA3_0152		UPA3_0152	188328	189002	-	conserved hypothetical protein		gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0152
UPA3_0153	UPA3_0153		UPA3_0153	189063	189830	+	integrase-recombinase protein	identified by match to protein family HMM PF00589	gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0153
UPA3_0154	UPA3_0154		UPA3_0154	189820	190446	+	conserved hypothetical protein		gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0154
UPA3_0155	UPA3_0155		UPA3_0155	190430	190603	+	conserved hypothetical protein		gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0155
UPA3_0156	UPA3_0156		UPA3_0156	190605	190946	+	conserved hypothetical protein		gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0156
UPA3_0157	UPA3_0157		UPA3_0157	190952	191248	+	conserved hypothetical protein		gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0157
UPA3_0158	UPA3_0158		UPA3_0158	191270	191491	+	conserved hypothetical protein		gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0158
UPA3_0159	UPA3_0159		UPA3_0159	191448	191630	+	conserved hypothetical protein		gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0159
UPA3_0160	UPA3_0160		UPA3_0160	191623	191859	+	conserved hypothetical protein		gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0160
UPA3_0161	UPA3_0161		UPA3_0161	191849	192184	+	conserved hypothetical protein		gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0161
UPA3_0162	UPA3_0162	bet	bet	192184	192840	+	phage recombination protein Bet	identified by match to protein family HMM PF03837%3B match to protein family HMM TIGR01913	gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0162
UPA3_0163	UPA3_0163		UPA3_0163	192830	193519	+	conserved hypothetical protein		gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0163
UPA3_0164	UPA3_0164		UPA3_0164	193509	193970	+	conserved hypothetical protein		gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0164
UPA3_0165	UPA3_0165		UPA3_0165	193952	194629	+	conserved hypothetical protein		gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0165
UPA3_0166	UPA3_0166		UPA3_0166	195533	195976	-	conserved hypothetical protein		gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0166
UPA3_0167	UPA3_0167		UPA3_0167	195945	196490	-	conserved hypothetical protein		gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0167
UPA3_0168	UPA3_0168		UPA3_0168	196480	196926	-	hypothetical protein	identified by glimmer%3B putative	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0168
UPA3_0169	UPA3_0169		UPA3_0169	196931	199174	-	conserved hypothetical protein		gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0169
UPA3_0170	UPA3_0170		UPA3_0170	199174	199851	-	hypothetical protein	identified by glimmer%3B putative	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0170
UPA3_0171	UPA3_0171		UPA3_0171	200012	201199	-	conserved hypothetical protein		gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0171
UPA3_0172	UPA3_0172		UPA3_0172	201215	201541	-	hypothetical protein	identified by glimmer%3B putative	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0172
UPA3_0173	UPA3_0173		UPA3_0173	201544	201912	-	conserved hypothetical protein		gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0173
UPA3_0174	UPA3_0174		UPA3_0174	201923	205405	-	conserved hypothetical protein		gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0174
UPA3_0175	UPA3_0175		UPA3_0175	205398	206762	-	conserved hypothetical protein		gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0175
UPA3_0176	UPA3_0176		UPA3_0176	206752	208197	-	phage terminase%2C large subunit%2C pbsx family	identified by match to protein family HMM PF03237%3B match to protein family HMM TIGR01547	gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0176
UPA3_0177	UPA3_0177		UPA3_0177	208554	208997	-	conserved hypothetical protein		gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0177
UPA3_0178	UPA3_0178		UPA3_0178	209441	210040	-	conserved hypothetical protein		gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0178
UPA3_0179	UPA3_0179		UPA3_0179	210417	211916	+	putative lipoprotein		gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0179
UPA3_0180	UPA3_0180		UPA3_0180	211971	214043	-	conserved hypothetical protein		gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0180
UPA3_0181	UPA3_0181		UPA3_0181	214119	214994	-	HAD hydrolase%2C IIB family	identified by match to protein family HMM PF00702%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0181
UPA3_0182	UPA3_0182	trpS	trpS	215020	216021	-	tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233	gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0182
UPA3_0183	UPA3_0183		UPA3_0183	216146	216532	+	conserved hypothetical protein	identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR01617	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0183
UPA3_0184	UPA3_0184		UPA3_0184	216522	217334	+	NAD(+)/NADH kinase family protein	identified by match to protein family HMM PF01513	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0184
UPA3_0185	UPA3_0185		UPA3_0185	217337	217717	+	conserved hypothetical protein	identified by similarity to GB:AAP56894.1	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0185
UPA3_0186	UPA3_0186		UPA3_0186	217798	218019	+	conserved hypothetical protein		gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0186
UPA3_0187	UPA3_0187		UPA3_0187	218021	218500	-	conserved hypothetical protein TIGR00246	identified by similarity to GB:ABP68568.1%3B match to protein family HMM PF02590	gene	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0187
UPA3_0188	UPA3_0188	tpiA	tpiA	218563	219279	+	triosephosphate isomerase	identified by match to protein family HMM PF00121	gene	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0188
UPA3_0189	UPA3_0189	gpmI	gpmI	219296	220804	+	2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase	identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307	gene	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0189
UPA3_0190	UPA3_0190		UPA3_0190	220851	221726	+	conserved hypothetical protein		gene	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0190
UPA3_0191	UPA3_0191	eno	eno	221829	223151	+	phosphopyruvate hydratase	identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060	gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0191
UPA3_0192	UPA3_0192		UPA3_0192	223120	224085	+	phosphofructokinase family protein	identified by match to protein family HMM PF00365	gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0192
UPA3_0193	UPA3_0193	pyk	pyk	224097	225521	+	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM TIGR01064	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0193
UPA3_0194	UPA3_0194	rpoB	rpoB	225644	229948	+	DNA-directed RNA polymerase%2C beta subunit	identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0194
UPA3_0195	UPA3_0195	rpoC	rpoC	229970	233887	+	DNA-directed RNA polymerase%2C beta' subunit	identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0195
UPA3_0196	UPA3_0196		UPA3_0196	234010	234531	+	putative lipoprotein		gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0196
UPA3_0197	UPA3_0197		UPA3_0197	234605	235459	-	conserved hypothetical protein	identified by match to protein family HMM PF02645	gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0197
UPA3_0198	UPA3_0198		UPA3_0198	235604	236197	+	putative tRNA binding domain protein	identified by match to protein family HMM PF01588	gene	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0198
UPA3_0199	UPA3_0199	prs	prs	236217	237209	+	ribose-phosphate diphosphokinase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251	gene	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0199
UPA3_0200	UPA3_0200		UPA3_0200	237216	237755	+	primase homolog	identified by match to protein family HMM PF01751%3B match to protein family HMM TIGR00334	gene	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0200
UPA3_0201	UPA3_0201		UPA3_0201	237759	238598	+	conserved hypothetical protein	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096	gene	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0201
UPA3_0202	UPA3_0202		UPA3_0202	238600	239826	+	ATPase%2C AAA family	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07728	gene	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0202
UPA3_0203	UPA3_0203	metG	metG	239846	241411	+	methionyl-tRNA synthetase	identified by match to protein family HMM PF09334%3B match to protein family HMM TIGR00398	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0203
UPA3_0204	UPA3_0204		UPA3_0204	241499	242671	+	conserved hypothetical protein		gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0204
UPA3_0205	UPA3_0205		UPA3_0205	242671	244866	+	phosphate transport system permease	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974	gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0205
UPA3_0206	UPA3_0206	pstB	pstB	244871	245860	+	phosphate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0206
UPA3_0207	UPA3_0207		UPA3_0207	245884	246540	+	PhoU family	identified by match to protein family HMM PF01895	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0207
UPA3_0208	UPA3_0208		UPA3_0208	246700	246924	+	conserved hypothetical protein		gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0208
UPA3_0209	UPA3_0209		UPA3_0209	246928	249057	+	copper-transporting P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01525	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0209
UPA3_0210	UPA3_0210	rpsO	rpsO	249400	249669	-	ribosomal protein S15	identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0210
UPA3_0211	UPA3_0211	rnc	rnc	249780	250490	-	ribonuclease III	identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191	gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0211
UPA3_0212	UPA3_0212	plsX	plsX	250480	251475	-	fatty acid/phospholipid synthesis protein PlsX	identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182	gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0212
UPA3_0213	UPA3_0213		UPA3_0213	251480	253174	-	DAK2 domain protein	identified by match to protein family HMM PF02734	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0213
UPA3_0214	UPA3_0214		UPA3_0214	253189	253455	-	conserved hypothetical protein		gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0214
UPA3_0215	UPA3_0215		UPA3_0215	253560	254177	-	conserved hypothetical protein		gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0215
UPA3_0216	UPA3_0216	rpmB	rpmB	254296	254490	+	ribosomal protein L28	identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0216
UPA3_0217	UPA3_0217	rpmA	rpmA	254913	255215	-	ribosomal protein L27	identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0217
UPA3_0218	UPA3_0218		UPA3_0218	255221	255529	-	conserved hypothetical protein	identified by match to protein family HMM PF04327	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0218
UPA3_0219	UPA3_0219	rplU	rplU	255535	255837	-	ribosomal protein L21	identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0219
UPA3_0220	UPA3_0220	gmk	gmk	256155	256730	+	guanylate kinase	identified by match to protein family HMM PF00625%3B match to protein family HMM TIGR03263	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0220
UPA3_0221	UPA3_0221		UPA3_0221	256711	257721	+	conserved hypothetical protein		gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0221
UPA3_0222	UPA3_0222		UPA3_0222	257725	258468	+	protein phosphatase	identified by match to protein family HMM PF00481	gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0222
UPA3_0223	UPA3_0223		UPA3_0223	258474	259634	+	serine/threonine kinase	identified by match to protein family HMM PF00069	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0223
UPA3_0224	UPA3_0224	rsgA	rsgA	259637	260548	+	ribosome small subunit-dependent GTPase A	identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157	gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0224
UPA3_0225	UPA3_0225		UPA3_0225	260694	262217	+	ammonium transporter	identified by match to protein family HMM PF00909	gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0225
UPA3_0226	UPA3_0226		UPA3_0226	262391	263947	+	ammonium transporter	identified by match to protein family HMM PF00909	gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0226
UPA3_0227	UPA3_0227		UPA3_0227	264057	265343	+	putative membrane protein		gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0227
UPA3_0228	UPA3_0228	fhs	fhs	265358	266923	+	formate--tetrahydrofolate ligase	identified by match to protein family HMM PF01268	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0228
UPA3_0229	UPA3_0229		UPA3_0229	267053	267805	+	tyrosine recombinase XerC	identified by match to protein family HMM PF00589	gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0229
UPA3_0230	UPA3_0230		UPA3_0230	267924	270365	+	amino acid antiporter	identified by match to protein family HMM PF00324	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0230
UPA3_0231	UPA3_0231		UPA3_0231	270543	271691	+	putative lipoprotein		gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0231
UPA3_0232	UPA3_0232		UPA3_0232	271748	272065	+	putative lipoprotein		gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0232
UPA3_0233	UPA3_0233		UPA3_0233	272200	272517	+	hypothetical protein	identified by glimmer%3B putative	gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0233
UPA3_0234	UPA3_0234		UPA3_0234	272692	274245	+	putative membrane protein	identified by match to protein family HMM PF02608	gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0234
UPA3_0235	UPA3_0235	infC	infC	274443	275006	+	translation initiation factor IF-3	identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0235
UPA3_0236	UPA3_0236	rpmI	rpmI	275021	275215	+	ribosomal protein L35	identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001	gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0236
UPA3_0237	UPA3_0237	rplT	rplT	275270	275632	+	ribosomal protein L20	identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0237
UPA3_0238	UPA3_0238	rpsJ	rpsJ	275851	276156	+	ribosomal protein S10	identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0238
UPA3_0239	UPA3_0239	rplC	rplC	276181	276882	+	ribosomal protein L3	identified by match to protein family HMM PF00297	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0239
UPA3_0240	UPA3_0240	rplD	rplD	276893	277528	+	ribosomal protein L4/L1 family	identified by match to protein family HMM PF00573	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0240
UPA3_0241	UPA3_0241	rplW	rplW	277531	277848	+	ribosomal protein L23	identified by match to protein family HMM PF00276	gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0241
UPA3_0242	UPA3_0242	rplB	rplB	277902	278741	+	ribosomal protein L2	identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0242
UPA3_0243	UPA3_0243	rpsS	rpsS	278762	279028	+	ribosomal protein S19	identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0243
UPA3_0244	UPA3_0244		UPA3_0244	279050	279985	+	ribosomal protein L22	identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044	gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0244
UPA3_0245	UPA3_0245	rpsC	rpsC	280005	280778	+	ribosomal protein S3	identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0245
UPA3_0246	UPA3_0246	rplP	rplP	280793	281209	+	ribosomal protein L16	identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0246
UPA3_0247	UPA3_0247	rpmC	rpmC	281209	281436	+	ribosomal protein L29	identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0247
UPA3_0248	UPA3_0248	rpsQ	rpsQ	281436	281690	+	ribosomal protein S17	identified by match to protein family HMM PF00366	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0248
UPA3_0249	UPA3_0249	rplN	rplN	281710	282078	+	ribosomal protein L14	identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0249
UPA3_0250	UPA3_0250	rplX	rplX	282093	282425	+	ribosomal protein L24	identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0250
UPA3_0251	UPA3_0251		UPA3_0251	282442	282996	+	50S ribosomal protein L5	identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673	gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0251
UPA3_0252	UPA3_0252	rpsN	rpsN	283000	283185	+	ribosomal protein S14p/S29e	identified by match to protein family HMM PF00253	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0252
UPA3_0253	UPA3_0253	rpsH	rpsH	283196	283594	+	ribosomal protein S8	identified by match to protein family HMM PF00410	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0253
UPA3_0254	UPA3_0254		UPA3_0254	283603	284151	+	50S ribosomal protein L6	identified by match to protein family HMM PF00347	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0254
UPA3_0255	UPA3_0255	rplR	rplR	284170	284535	+	ribosomal protein L18	identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0255
UPA3_0256	UPA3_0256	rpsE	rpsE	284553	285164	+	ribosomal protein S5	identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0256
UPA3_0257	UPA3_0257	rplO	rplO	285181	285627	+	ribosomal protein L15	identified by match to protein family HMM PF01305%3B match to protein family HMM TIGR01071	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0257
UPA3_0258	UPA3_0258		UPA3_0258	285680	287095	+	preprotein translocase%2C SecY subunit	identified by match to protein family HMM PF00344%3B match to protein family HMM TIGR00967	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0258
UPA3_0259	UPA3_0259	adk	adk	287104	287745	+	adenylate kinase	identified by match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0259
UPA3_0260	UPA3_0260	map	map	287770	288519	+	methionine aminopeptidase%2C type I	identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0260
UPA3_0261	UPA3_0261	infA	infA	288547	288771	+	translation initiation factor IF-1	identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0261
UPA3_0262	UPA3_0262	rpmJ	rpmJ	288795	288908	+	ribosomal protein L36	identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0262
UPA3_0263	UPA3_0263	rpsM	rpsM	288933	289331	+	ribosomal protein S13p/S18e	identified by match to protein family HMM PF00416	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0263
UPA3_0264	UPA3_0264	rpsK	rpsK	289353	289718	+	ribosomal protein S11	identified by match to protein family HMM PF00411	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0264
UPA3_0265	UPA3_0265	rpoA	rpoA	289755	290738	+	DNA-directed RNA polymerase%2C alpha subunit	identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0265
UPA3_0266	UPA3_0266	rplQ	rplQ	290766	291125	+	ribosomal protein L17	identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0266
UPA3_0267	UPA3_0267		UPA3_0267	291392	293257	+	conserved hypothetical protein		gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0267
UPA3_0268	UPA3_0268		UPA3_0268	293264	294559	+	putative lipoprotein		gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0268
UPA3_0269	UPA3_0269		UPA3_0269	294626	295033	+	conserved hypothetical protein		gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0269
UPA3_0270	UPA3_0270		UPA3_0270	295023	295610	+	conserved hypothetical protein	identified by match to protein family HMM PF01205	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0270
UPA3_0271	UPA3_0271		UPA3_0271	295618	297402	-	putative lipoprotein		gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0271
UPA3_0272	UPA3_0272		UPA3_0272	297613	300597	-	cation-transporting P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0272
UPA3_0273	UPA3_0273		UPA3_0273	300748	301077	+	conserved hypothetical protein	identified by match to protein family HMM PF03672	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0273
UPA3_0274	UPA3_0274		UPA3_0274	301082	301708	+	ATP/GTP-binding protein	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0274
UPA3_0275	UPA3_0275	valS	valS	301689	304313	+	valyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00422	gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0275
UPA3_0276	UPA3_0276		UPA3_0276	304318	304836	+	rRNA methylase	identified by match to protein family HMM PF00588	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0276
UPA3_0277	UPA3_0277	trmB	trmB	304842	305516	+	tRNA (guanine-N(7)-)-methyltransferase	identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091	gene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0277
UPA3_0278	UPA3_0278		UPA3_0278	305553	305633	+	tRNA-His		tRNA	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0278
UPA3_0279	UPA3_0279		UPA3_0279	305764	306435	+	putative membrane protein		gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0279
UPA3_0280	UPA3_0280		UPA3_0280	306489	307856	+	conserved hypothetical protein		gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0280
UPA3_0281	UPA3_0281		UPA3_0281	307834	308292	+	histidine triad protein HIT	identified by match to protein family HMM PF01230	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0281
UPA3_0282	UPA3_0282		UPA3_0282	309054	310118	-	coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0282
UPA3_0283	UPA3_0283		UPA3_0283	308302	309057	+	conserved hypothetical protein		gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0283
UPA3_0284	UPA3_0284		UPA3_0284	310133	310345	-	hypothetical protein	identified by glimmer%3B putative	gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0284
UPA3_0285	UPA3_0285		UPA3_0285	310525	311070	+	putative membrane protein		gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0285
UPA3_0286	UPA3_0286		UPA3_0286	311073	312164	+	nicotinate phosphoribosyltransferase		gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0286
UPA3_0287	UPA3_0287	rpsU	rpsU	312240	312407	+	ribosomal protein S21	identified by match to protein family HMM TIGR00030	gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0287
UPA3_0288	UPA3_0288	argS	argS	312531	314183	+	arginyl-tRNA synthetase	identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456	gene	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0288
UPA3_0289	UPA3_0289	pgk	pgk	314186	315454	+	phosphoglycerate kinase	identified by match to protein family HMM PF00162	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0289
UPA3_0290	UPA3_0290		UPA3_0290	315458	316549	+	endo-1%2C4-beta-glucanase	identified by match to protein family HMM PF05343	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0290
UPA3_0291	UPA3_0291	deoD	deoD	316623	317342	+	purine nucleoside phosphorylase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR00107	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0291
UPA3_0292	UPA3_0292		UPA3_0292	317438	317830	+	DNA-binding protein HU	identified by match to protein family HMM PF00216	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0292
UPA3_0293	UPA3_0293		UPA3_0293	317930	320086	+	ppGpp 3'-pyrophosphohydrolase	identified by match to protein family HMM PF01966%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0293
UPA3_0294	UPA3_0294	pyrG	pyrG	320086	321699	+	CTP synthase	identified by match to protein family HMM PF06418%3B match to protein family HMM TIGR00337	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0294
UPA3_0295	UPA3_0295	hisS	hisS	321703	322965	+	histidyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM TIGR00442	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0295
UPA3_0296	UPA3_0296	aspS	aspS	322971	324707	+	aspartyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0296
UPA3_0297	UPA3_0297		UPA3_0297	324700	325536	+	conserved hypothetical protein		gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0297
UPA3_0298	UPA3_0298	msrA	msrA	325577	326074	+	methionine-S-sulfoxide reductase	identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0298
UPA3_0299	UPA3_0299		UPA3_0299	326110	326700	-	conserved hypothetical protein		gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0299
UPA3_0300	UPA3_0300		UPA3_0300	326707	327195	-	glutathione peroxidase	identified by match to protein family HMM PF00255	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0300
UPA3_0301	UPA3_0301		UPA3_0301	327517	337683	+	conserved hypothetical protein	identified by match to protein family HMM PF00657	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0301
UPA3_0302	UPA3_0302		UPA3_0302	337841	338680	+	putative lipoprotein		gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0302
UPA3_0303	UPA3_0303		UPA3_0303	338690	339400	+	conserved hypothetical protein	identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0303
UPA3_0304	UPA3_0304		UPA3_0304	340104	340616	-	recombination protein U	identified by match to protein family HMM PF03838	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0304
UPA3_0305	UPA3_0305		UPA3_0305	339400	340107	+	conserved hypothetical protein		gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0305
UPA3_0306	UPA3_0306	efp	efp	340759	341325	+	translation elongation factor P	identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM PF09285%3B match to protein family HMM TIGR00038	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0306
UPA3_0307	UPA3_0307		UPA3_0307	341328	341630	+	conserved hypothetical protein		gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0307
UPA3_0308	UPA3_0308	nusB	nusB	341633	342016	+	transcription antitermination factor NusB	identified by match to protein family HMM TIGR01951	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0308
UPA3_0309	UPA3_0309		UPA3_0309	342022	342726	+	conserved hypothetical protein	identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0309
UPA3_0310	UPA3_0310		UPA3_0310	343697	343864	-	conserved hypothetical protein		gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0310
UPA3_0311	UPA3_0311		UPA3_0311	342753	343700	+	conserved hypothetical protein		gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0311
UPA3_0312	UPA3_0312		UPA3_0312	343952	345482	+	small subunit ribosomal RNA		rRNA	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0312
UPA3_0314	UPA3_0314	greA	greA	348963	349433	+	transcription elongation factor GreA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0314
UPA3_0315	UPA3_0315		UPA3_0315	349512	349597	+	tRNA-Tyr		tRNA	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0315
UPA3_0316	UPA3_0316		UPA3_0316	349601	349677	+	tRNA-Gln		tRNA	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0316
UPA3_0317	UPA3_0317		UPA3_0317	349743	349819	+	tRNA-Lys		tRNA	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0317
UPA3_0318	UPA3_0318		UPA3_0318	349878	349965	+	tRNA-Leu		tRNA	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0318
UPA3_0319	UPA3_0319		UPA3_0319	349968	350041	+	tRNA-Gly		tRNA	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0319
UPA3_0320	UPA3_0320		UPA3_0320	350104	350871	+	dna methylase	identified by match to protein family HMM PF05175	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0320
UPA3_0321	UPA3_0321		UPA3_0321	350915	351835	+	apurinic endonuclease (APN1)	identified by match to protein family HMM PF01261%3B match to protein family HMM TIGR00587	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0321
UPA3_0322	UPA3_0322		UPA3_0322	352069	353019	-	hypothetical protein	identified by glimmer%3B putative	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0322
UPA3_0323	UPA3_0323		UPA3_0323	353022	354167	-	conserved hypothetical protein		gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0323
UPA3_0324	UPA3_0324		UPA3_0324	354504	355064	+	conserved hypothetical protein		gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0324
UPA3_0325	UPA3_0325	rpsT	rpsT	355132	355386	-	ribosomal protein S20	identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029	gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0325
UPA3_0326	UPA3_0326		UPA3_0326	355975	356415	-	N-acetyltransferase complex%2C probable ribosomal protein-alanine-acetyltransferase subunit	identified by match to protein family HMM PF00583	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0326
UPA3_0327	UPA3_0327		UPA3_0327	356393	356968	-	glycoprotease family	identified by match to protein family HMM PF00814	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0327
UPA3_0328	UPA3_0328		UPA3_0328	356961	357839	-	pseudouridylate synthase%2C 23S RNA-specific	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0328
UPA3_0329	UPA3_0329		UPA3_0329	357863	358654	-	conserved hypothetical protein		gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0329
UPA3_0330	UPA3_0330	ppa	ppa	358654	359199	-	inorganic diphosphatase	identified by match to protein family HMM PF00719	gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0330
UPA3_0331	UPA3_0331		UPA3_0331	359365	359745	+	conserved hypothetical protein		gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0331
UPA3_0332	UPA3_0332		UPA3_0332	360032	364681	+	efflux ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0332
UPA3_0333	UPA3_0333	nusA	nusA	364794	366170	+	transcription termination factor NusA	identified by match to protein family HMM PF00013%3B match to protein family HMM PF08529%3B match to protein family HMM TIGR01953	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0333
UPA3_0334	UPA3_0334		UPA3_0334	366181	366432	+	conserved hypothetical protein	identified by match to protein family HMM PF04296	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0334
UPA3_0335	UPA3_0335	infB	infB	366467	368311	+	translation initiation factor IF-2	identified by match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487	gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0335
UPA3_0336	UPA3_0336	rbfA	rbfA	368319	368669	+	ribosome-binding factor A	identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0336
UPA3_0337	UPA3_0337		UPA3_0337	368677	369087	+	putative membrane protein		gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0337
UPA3_0338	UPA3_0338		UPA3_0338	369167	369862	-	protein of unknown function	identified by match to protein family HMM PF01863	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0338
UPA3_0339	UPA3_0339	lepA	lepA	369875	371674	-	GTP-binding protein LepA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0339
UPA3_0340	UPA3_0340		UPA3_0340	371792	372451	-	LemA family	identified by match to protein family HMM PF04011	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0340
UPA3_0341	UPA3_0341		UPA3_0341	372597	372956	+	conserved hypothetical protein		gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0341
UPA3_0342	UPA3_0342		UPA3_0342	372960	373733	+	rRNA methylase	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0342
UPA3_0343	UPA3_0343		UPA3_0343	373717	374661	+	DNA polymerase III%2C delta subunit superfamily	identified by match to protein family HMM PF06144	gene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0343
UPA3_0344	UPA3_0344		UPA3_0344	374818	376086	+	conserved hypothetical protein		gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0344
UPA3_0345	UPA3_0345		UPA3_0345	376087	377070	+	putative membrane protein		gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0345
UPA3_0346	UPA3_0346		UPA3_0346	377402	377524	+	conserved hypothetical protein		gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0346
UPA3_0347	UPA3_0347		UPA3_0347	377799	378101	-	conserved hypothetical protein		gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0347
UPA3_0348	UPA3_0348	udk	udk	378130	378753	-	uridine kinase	identified by match to protein family HMM PF00485%3B match to protein family HMM TIGR00235	gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0348
UPA3_0349	UPA3_0349	rpmF	rpmF	378939	379112	+	ribosomal protein L32	identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0349
UPA3_0350	UPA3_0350		UPA3_0350	379121	379378	+	conserved hypothetical protein		gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0350
UPA3_0351	UPA3_0351		UPA3_0351	379497	381506	+	conserved hypothetical protein		gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0351
UPA3_0352	UPA3_0352		UPA3_0352	381530	382837	+	conserved hypothetical protein		gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0352
UPA3_0353	UPA3_0353		UPA3_0353	382895	383704	+	methylenetetrahydrofolate dehydrogenase	identified by match to protein family HMM PF02882	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0353
UPA3_0354	UPA3_0354		UPA3_0354	383781	385667	+	conserved hypothetical protein		gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0354
UPA3_0355	UPA3_0355	dnaK	dnaK	385843	387654	+	chaperone protein DnaK	identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0355
UPA3_0356	UPA3_0356		UPA3_0356	387766	388872	+	conserved hypothetical protein TIGR00481	identified by similarity to RF:YP_279226.1%3B match to protein family HMM TIGR00481	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0356
UPA3_0357	UPA3_0357		UPA3_0357	388909	389484	+	conserved hypothetical protein		gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0357
UPA3_0358	UPA3_0358	cmk	cmk	389484	390158	+	cytidylate kinase	identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0358
UPA3_0359	UPA3_0359		UPA3_0359	390235	390522	+	conserved hypothetical protein		gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0359
UPA3_0360	UPA3_0360		UPA3_0360	390574	391368	+	1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553	gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0360
UPA3_0361	UPA3_0361	scpA	scpA	391509	392384	+	segregation and condensation protein A	identified by match to protein family HMM PF02616	gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0361
UPA3_0362	UPA3_0362		UPA3_0362	392377	393471	+	segregation and condensation protein B	identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0362
UPA3_0363	UPA3_0363	tig	tig	393566	394915	+	trigger factor	identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0363
UPA3_0364	UPA3_0364	lon	lon	395062	397437	+	ATP-dependent protease La	identified by match to protein family HMM PF00004%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0364
UPA3_0365	UPA3_0365		UPA3_0365	397523	398869	+	RNA polymerase sigma factor	identified by match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0365
UPA3_0366	UPA3_0366		UPA3_0366	398853	399518	+	conserved hypothetical protein	identified by match to protein family HMM PF04816	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0366
UPA3_0367	UPA3_0367		UPA3_0367	399499	400287	+	NIF3 family protein	identified by match to protein family HMM PF01784	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0367
UPA3_0368	UPA3_0368		UPA3_0368	400317	400646	-	conserved hypothetical protein		gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0368
UPA3_0369	UPA3_0369		UPA3_0369	400873	401898	-	hypothetical protein	identified by glimmer%3B putative	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0369
UPA3_0370	UPA3_0370	truB	truB	402004	402687	+	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0370
UPA3_0371	UPA3_0371		UPA3_0371	402653	403504	+	riboflavin biosynthesis protein RibF homolog	identified by match to protein family HMM PF01687%3B match to protein family HMM PF06574	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0371
UPA3_0372	UPA3_0372		UPA3_0372	403647	405314	+	putative lipoprotein		gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0372
UPA3_0373	UPA3_0373		UPA3_0373	405329	406399	+	citrate-dependent iron transport%2C membrane-bound protein	identified by match to protein family HMM PF01032	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0373
UPA3_0374	UPA3_0374		UPA3_0374	406405	407508	+	ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0374
UPA3_0375	UPA3_0375		UPA3_0375	407657	409291	+	putative ABC substrate-binding protein - iron		gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0375
UPA3_0376	UPA3_0376		UPA3_0376	409384	411018	+	putative ABC substrate-binding protein - iron		gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0376
UPA3_0377	UPA3_0377		UPA3_0377	411176	411700	+	putative lipoprotein		gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0377
UPA3_0378	UPA3_0378		UPA3_0378	411742	413169	-	aldehyde dehydrogenase (NAD) family protein	identified by match to protein family HMM PF00171	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0378
UPA3_0379	UPA3_0379	asnA	asnA	413201	414190	-	aspartate--ammonia ligase	identified by match to protein family HMM PF03590	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0379
UPA3_0380	UPA3_0380	pgsA	pgsA	414168	414815	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0380
UPA3_0381	UPA3_0381	asnS	asnS	414805	416169	-	asparaginyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00457	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0381
UPA3_0382	UPA3_0382		UPA3_0382	416263	416886	-	conserved hypothetical protein		gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0382
UPA3_0383	UPA3_0383		UPA3_0383	417026	418549	-	conserved hypothetical protein		gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0383
UPA3_0384	UPA3_0384	pdp	pdp	418791	420092	+	pyrimidine-nucleoside phosphorylase	identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02644	gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0384
UPA3_0385	UPA3_0385	alaS	alaS	420123	422843	+	alanyl-tRNA synthetase	identified by match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0385
UPA3_0386	UPA3_0386		UPA3_0386	422836	423279	+	conserved hypothetical protein	identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250	gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0386
UPA3_0387	UPA3_0387	leuS	leuS	423295	425715	+	leucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0387
UPA3_0388	UPA3_0388		UPA3_0388	425909	426532	-	integrase-recombinase protein	identified by match to protein family HMM PF00665	gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0388
UPA3_0389	UPA3_0389		UPA3_0389	426926	427153	-	conserved hypothetical protein		gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0389
UPA3_0390	UPA3_0390		UPA3_0390	427352	428545	-	multiple banded antigen		gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0390
UPA3_0391	UPA3_0391		UPA3_0391	428856	429605	+	conserved hypothetical protein		gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0391
UPA3_0392	UPA3_0392		UPA3_0392	429747	429959	-	secreted protein		gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0392
UPA3_0393	UPA3_0393	polC	polC	430129	434457	+	DNA polymerase III%2C alpha subunit%2C Gram-positive type	identified by match to protein family HMM PF00929%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01405	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0393
UPA3_0394	UPA3_0394		UPA3_0394	434572	436212	+	putative lipoprotein		gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0394
UPA3_0395	UPA3_0395		UPA3_0395	436292	437095	-	conserved hypothetical protein		gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0395
UPA3_0396	UPA3_0396		UPA3_0396	437095	437601	-	conserved hypothetical protein	identified by match to protein family HMM PF02525	gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0396
UPA3_0397	UPA3_0397	uvrC	uvrC	437769	439523	-	excinuclease ABC%2C C subunit	identified by match to protein family HMM PF01541%3B match to protein family HMM PF08459%3B match to protein family HMM TIGR00194	gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0397
UPA3_0398	UPA3_0398		UPA3_0398	439523	440497	-	NAD+ dependent glycerol-3-phosphate dehydrogenase	identified by match to protein family HMM PF01210%3B match to protein family HMM PF07479	gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0398
UPA3_0399	UPA3_0399		UPA3_0399	440505	441833	-	GTP-binding protein EngA	identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650	gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0399
UPA3_0400	UPA3_0400		UPA3_0400	441969	443066	+	ComEC/Rec2 family protein	identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0400
UPA3_0401	UPA3_0401	mraZ	mraZ	443142	443579	+	MraZ protein	identified by match to protein family HMM PF02381%3B match to protein family HMM TIGR00242	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0401
UPA3_0402	UPA3_0402	mraW	mraW	443569	444495	+	S-adenosyl-methyltransferase MraW	identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0402
UPA3_0403	UPA3_0403		UPA3_0403	444514	445695	+	conserved hypothetical protein		gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0403
UPA3_0404	UPA3_0404		UPA3_0404	445791	446666	+	conserved hypothetical protein	identified by match to protein family HMM PF07751	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0404
UPA3_0405	UPA3_0405		UPA3_0405	446671	450525	+	conserved domain protein	identified by similarity to GB:BAC44638.1	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0405
UPA3_0406	UPA3_0406		UPA3_0406	450586	451401	+	putative membrane protein		gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0406
UPA3_0407	UPA3_0407		UPA3_0407	451508	453622	+	chaperone ClpB	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0407
UPA3_0408	UPA3_0408		UPA3_0408	453776	455560	+	putative membrane protein		gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0408
UPA3_0409	UPA3_0409	acpS	acpS	455590	455937	-	holo-(acyl-carrier-protein) synthase	identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00556	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0409
UPA3_0410	UPA3_0410		UPA3_0410	455942	456241	-	conserved hypothetical protein		gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0410
UPA3_0411	UPA3_0411		UPA3_0411	456292	456573	-	conserved hypothetical protein		gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0411
UPA3_0412	UPA3_0412		UPA3_0412	456575	456853	-	conserved hypothetical protein		gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0412
UPA3_0413	UPA3_0413	rnhC	rnhC	456903	457853	-	ribonuclease HIII	identified by match to protein family HMM PF01351	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0413
UPA3_0414	UPA3_0414		UPA3_0414	457953	458558	+	conserved hypothetical protein		gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0414
UPA3_0415	UPA3_0415		UPA3_0415	458651	459697	-	hemin permease	identified by match to protein family HMM PF01032	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0415
UPA3_0416	UPA3_0416		UPA3_0416	459700	460719	-	ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0416
UPA3_0417	UPA3_0417		UPA3_0417	460730	462178	-	putative ABC substrate-binding protein - iron		gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0417
UPA3_0418	UPA3_0418	trmU	trmU	462259	463416	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054%3B match to protein family HMM TIGR00420	gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0418
UPA3_0419	UPA3_0419		UPA3_0419	463525	464421	+	conserved hypothetical protein		gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0419
UPA3_0420	UPA3_0420		UPA3_0420	464652	465458	-	integrase-recombinase protein		gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0420
UPA3_0421	UPA3_0421		UPA3_0421	465518	466291	-	putative membrane protein	identified by match to protein family HMM PF02660%3B match to protein family HMM TIGR00023	gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0421
UPA3_0422	UPA3_0422		UPA3_0422	466506	467702	+	putative membrane protein		gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0422
UPA3_0423	UPA3_0423	grpE	grpE	467795	468451	-	co-chaperone GrpE	identified by match to protein family HMM PF01025	gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0423
UPA3_0424	UPA3_0424	dnaJ	dnaJ	468451	469578	-	chaperone protein DnaJ	identified by match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0424
UPA3_0425	UPA3_0425		UPA3_0425	469706	470155	-	conserved hypothetical protein		gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0425
UPA3_0426	UPA3_0426		UPA3_0426	470136	471056	-	putative membrane protein		gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0426
UPA3_0427	UPA3_0427	ileS	ileS	471208	473910	+	isoleucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00392	gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0427
UPA3_0428	UPA3_0428		UPA3_0428	473914	474876	+	O-sialoglycoprotein endopeptidase	identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329	gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0428
UPA3_0429	UPA3_0429	metK	metK	474876	476030	+	methionine adenosyltransferase	identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0429
UPA3_0430	UPA3_0430		UPA3_0430	476087	476170	-	tRNA-Leu		tRNA	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0430
UPA3_0431	UPA3_0431	mutM	mutM	476233	477060	-	formamidopyrimidine-DNA glycosylase	identified by match to protein family HMM PF01149%3B match to protein family HMM PF06827%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0431
UPA3_0432	UPA3_0432	exo	exo	477102	477971	-	Exo	identified by match to protein family HMM PF01367%3B match to protein family HMM PF02739	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0432
UPA3_0433	UPA3_0433		UPA3_0433	477975	480884	-	DNA polymerase III subunit alpha	identified by match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594	gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0433
UPA3_0434	UPA3_0434		UPA3_0434	480884	481096	-	conserved hypothetical protein		gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0434
UPA3_0435	UPA3_0435		UPA3_0435	481181	482146	-	DHH family protein	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0435
UPA3_0436	UPA3_0436	thiI	thiI	482164	483336	-	thiamine biosynthesis/tRNA modification protein ThiI	identified by match to protein family HMM PF02568%3B match to protein family HMM PF02926%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00342	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0436
UPA3_0437	UPA3_0437		UPA3_0437	483314	484180	-	conserved hypothetical protein		gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0437
UPA3_0438	UPA3_0438		UPA3_0438	484295	485041	+	conserved hypothetical protein		gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0438
UPA3_0439	UPA3_0439	hrcA	hrcA	485028	486101	+	heat-inducible transcription repressor HrcA	identified by match to protein family HMM PF01628%3B match to protein family HMM TIGR00331	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0439
UPA3_0440	UPA3_0440		UPA3_0440	486091	486594	+	conserved hypothetical protein		gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0440
UPA3_0441	UPA3_0441		UPA3_0441	486606	487316	+	conserved hypothetical protein	identified by match to protein family HMM PF04167	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0441
UPA3_0442	UPA3_0442		UPA3_0442	487309	488073	+	conserved hypothetical protein		gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0442
UPA3_0443	UPA3_0443		UPA3_0443	488231	488428	-	conserved hypothetical protein		gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0443
UPA3_0444	UPA3_0444		UPA3_0444	488679	489356	+	conserved hypothetical protein		gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0444
UPA3_0445	UPA3_0445		UPA3_0445	489413	489964	+	conserved hypothetical protein		gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0445
UPA3_0446	UPA3_0446		UPA3_0446	490176	490688	-	urease	identified by match to protein family HMM PF00210	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0446
UPA3_0447	UPA3_0447	ureD	ureD	490795	491658	-	urease accessory protein UreD	identified by match to protein family HMM PF01774	gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0447
UPA3_0448	UPA3_0448	ureG	ureG	491668	492288	-	urease accessory protein UreG	identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00101	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0448
UPA3_0449	UPA3_0449		UPA3_0449	492370	493077	-	urease accessory protein UreF	identified by match to protein family HMM PF01730	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0449
UPA3_0450	UPA3_0450		UPA3_0450	493064	493513	-	urease accessory protein UreE	identified by match to protein family HMM PF02814%3B match to protein family HMM PF05194	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0450
UPA3_0451	UPA3_0451	ureC	ureC	493578	495374	-	urease%2C alpha subunit	identified by match to protein family HMM PF00449%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR01792	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0451
UPA3_0452	UPA3_0452	ureB	ureB	495420	495794	-	urease%2C beta subunit	identified by match to protein family HMM PF00699%3B match to protein family HMM TIGR00192	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0452
UPA3_0453	UPA3_0453	ureA	ureA	495841	496146	-	urease%2C gamma subunit	identified by match to protein family HMM PF00547%3B match to protein family HMM TIGR00193	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0453
UPA3_0454	UPA3_0454		UPA3_0454	496230	496358	-	hypothetical protein	identified by glimmer%3B putative	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0454
UPA3_0455	UPA3_0455		UPA3_0455	496448	497611	+	ferrichrome transport ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0455
UPA3_0456	UPA3_0456	rrmJ	rrmJ	497694	498437	+	ribosomal RNA large subunit methyltransferase J	identified by match to protein family HMM PF01479%3B match to protein family HMM PF01728	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0456
UPA3_0457	UPA3_0457		UPA3_0457	498427	499509	+	DNA polymerase IV (Pol IV)	identified by match to protein family HMM PF00817	gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0457
UPA3_0458	UPA3_0458		UPA3_0458	499521	499850	-	holliday junction ATP-dependent DNA helicase RuvB	identified by match to protein family HMM PF05491	gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0458
UPA3_0459	UPA3_0459		UPA3_0459	499964	500215	+	conserved hypothetical protein		gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0459
UPA3_0460	UPA3_0460		UPA3_0460	500297	501796	-	hypothetical protein	identified by glimmer%3B putative	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0460
UPA3_0461	UPA3_0461		UPA3_0461	501744	503096	-	conserved hypothetical protein		gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0461
UPA3_0462	UPA3_0462		UPA3_0462	503050	504249	-	conserved hypothetical protein		gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0462
UPA3_0463	UPA3_0463		UPA3_0463	504640	506526	-	putative lipoprotein		gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0463
UPA3_0464	UPA3_0464		UPA3_0464	506682	506858	-	hypothetical protein	identified by glimmer%3B putative	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0464
UPA3_0465	UPA3_0465		UPA3_0465	507050	507475	-	conserved hypothetical protein		gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0465
UPA3_0466	UPA3_0466		UPA3_0466	508284	508658	+	type I restriction enzyme S protein		gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0466
UPA3_0467	UPA3_0467	ruvB	ruvB	508734	509672	-	holliday junction DNA helicase RuvB	identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM TIGR00635	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0467
UPA3_0468	UPA3_0468		UPA3_0468	509662	510249	-	holliday junction ATP-dependent DNA helicase RuvA	identified by match to protein family HMM PF07499	gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0468
UPA3_0469	UPA3_0469		UPA3_0469	510291	511454	-	putative membrane protein		gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0469
UPA3_0470	UPA3_0470		UPA3_0470	511534	512550	-	conserved hypothetical protein		gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0470
UPA3_0471	UPA3_0471	proS	proS	512647	514065	-	prolyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF09180%3B match to protein family HMM TIGR00408	gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0471
UPA3_0472	UPA3_0472		UPA3_0472	514091	514558	-	SUF system FeS assembly protein%2C NifU family	identified by match to protein family HMM PF01592	gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0472
UPA3_0473	UPA3_0473		UPA3_0473	514545	515753	-	aminotransferase NifS	identified by match to protein family HMM PF00266	gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0473
UPA3_0474	UPA3_0474		UPA3_0474	515965	519351	+	conserved hypothetical protein		gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0474
UPA3_0475	UPA3_0475		UPA3_0475	519351	520010	+	D-ribulose-5-phosphate 3 epimerase	identified by match to protein family HMM PF00834	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0475
UPA3_0476	UPA3_0476	pheT	pheT	520137	522455	-	phenylalanyl-tRNA synthetase%2C beta subunit	identified by match to protein family HMM PF01588%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472	gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0476
UPA3_0477	UPA3_0477	pheS	pheS	522487	523488	-	phenylalanyl-tRNA synthetase%2C alpha subunit	identified by match to protein family HMM PF01409%3B match to protein family HMM TIGR00468	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0477
UPA3_0478	UPA3_0478		UPA3_0478	523495	523965	-	conserved hypothetical protein		gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0478
UPA3_0479	UPA3_0479	nadE	nadE	523958	524725	-	NAD+ synthetase	identified by match to protein family HMM PF02540%3B match to protein family HMM TIGR00552	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0479
UPA3_0480	UPA3_0480		UPA3_0480	524733	526040	-	GTP-binding protein	identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM PF09269%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02729	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0480
UPA3_0481	UPA3_0481		UPA3_0481	526043	526861	-	conserved hypothetical protein		gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0481
UPA3_0482	UPA3_0482	fmt	fmt	526928	527845	-	methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0482
UPA3_0483	UPA3_0483		UPA3_0483	527919	528644	-	conserved hypothetical protein		gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0483
UPA3_0484	UPA3_0484	def	def	528894	529490	+	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0484
UPA3_0485	UPA3_0485	parE	parE	529497	531425	+	DNA topoisomerase IV%2C B subunit	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01058	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0485
UPA3_0486	UPA3_0486	parC	parC	531431	533983	+	DNA topoisomerase IV%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01061	gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0486
UPA3_0487	UPA3_0487		UPA3_0487	533983	535068	+	conserved hypothetical protein	identified by similarity to OMNI:NTL01MG0418	gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0487
UPA3_0488	UPA3_0488		UPA3_0488	535095	536273	+	nicotinate (nicotinamide) nucleotide adenylyltransferase/HD domain	identified by match to protein family HMM PF01467%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00482%3B match to protein family HMM TIGR00488	gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0488
UPA3_0489	UPA3_0489	mtnN	mtnN	536283	536975	+	MTA/SAH nucleosidase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0489
UPA3_0490	UPA3_0490		UPA3_0490	537082	537333	+	conserved hypothetical protein		gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0490
UPA3_0491	UPA3_0491		UPA3_0491	537623	539950	+	conserved hypothetical protein		gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0491
UPA3_0492	UPA3_0492		UPA3_0492	539997	543938	+	conserved hypothetical protein	identified by match to protein family HMM PF07198	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0492
UPA3_0493	UPA3_0493		UPA3_0493	544025	545875	-	putative lipoprotein		gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0493
UPA3_0494	UPA3_0494		UPA3_0494	546031	548508	-	type III restriction enzyme%2C res subunit family	identified by match to protein family HMM PF04851	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0494
UPA3_0495	UPA3_0495		UPA3_0495	548514	549596	-	DNA methylase	identified by match to protein family HMM PF01555	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0495
UPA3_0496	UPA3_0496		UPA3_0496	549751	550101	-	type III restriction-modification system: methylase		gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0496
UPA3_0497	UPA3_0497		UPA3_0497	550255	553332	-	conserved hypothetical protein	identified by match to protein family HMM PF07198	gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0497
UPA3_0498	UPA3_0498		UPA3_0498	553643	555262	+	putative membrane protein	identified by match to protein family HMM PF02608	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0498
UPA3_0499	UPA3_0499		UPA3_0499	555594	558371	-	conserved hypothetical protein		gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0499
UPA3_0500	UPA3_0500		UPA3_0500	558651	572858	-	conserved hypothetical protein	identified by match to protein family HMM PF07198	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0500
UPA3_0501	UPA3_0501		UPA3_0501	573085	576396	-	putative lipoprotein		gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0501
UPA3_0502	UPA3_0502	ackA	ackA	576667	577830	+	acetate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0502
UPA3_0503	UPA3_0503		UPA3_0503	577834	579951	-	putative lipoprotein		gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0503
UPA3_0504	UPA3_0504		UPA3_0504	580136	581440	-	membrane nuclease A - hypothetical	identified by match to protein family HMM PF03372	gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0504
UPA3_0505	UPA3_0505		UPA3_0505	581592	584333	-	putative lipoprotein		gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0505
UPA3_0506	UPA3_0506	apt	apt	584547	585068	-	adenine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090	gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0506
UPA3_0507	UPA3_0507		UPA3_0507	585089	588100	-	putative lipoprotein		gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0507
UPA3_0508	UPA3_0508		UPA3_0508	588422	588889	+	conserved hypothetical protein TIGR00043	identified by similarity to SP:Q8EW68%3B match to protein family HMM PF02130%3B match to protein family HMM TIGR00043	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0508
UPA3_0509	UPA3_0509	era	era	588882	589784	+	GTP-binding protein Era	identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0509
UPA3_0510	UPA3_0510	recO	recO	589784	590500	+	DNA repair protein RecO	identified by match to protein family HMM TIGR00613	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0510
UPA3_0511	UPA3_0511	glyS	glyS	590534	591955	+	glycyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00389	gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0511
UPA3_0512	UPA3_0512		UPA3_0512	591943	593868	+	DNA primase	identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM PF08275%3B match to protein family HMM TIGR01391	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0512
UPA3_0513	UPA3_0513		UPA3_0513	593947	611358	-	hypothetical protein	identified by glimmer%3B putative	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0513
UPA3_0514	UPA3_0514		UPA3_0514	611586	612719	+	conserved hypothetical protein		gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0514
UPA3_0515	UPA3_0515	rpsD	rpsD	612818	613426	-	ribosomal protein S4	identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017	gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0515
UPA3_0516	UPA3_0516		UPA3_0516	613692	615383	+	conserved hypothetical protein		gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0516
UPA3_0518	UPA3_0518		UPA3_0518	615430	615584	-	tRNA-Phe		tRNA	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0518
UPA3_0519	UPA3_0519		UPA3_0519	615585	615663	-	tRNA-Met		tRNA	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0519
UPA3_0520	UPA3_0520		UPA3_0520	615719	615813	-	tRNA-Ser		tRNA	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0520
UPA3_0521	UPA3_0521		UPA3_0521	615880	615959	-	tRNA-Met		tRNA	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0521
UPA3_0522	UPA3_0522		UPA3_0522	615960	616038	-	tRNA-Met		tRNA	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0522
UPA3_0523	UPA3_0523		UPA3_0523	616041	616119	-	tRNA-Pro		tRNA	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0523
UPA3_0524	UPA3_0524		UPA3_0524	616165	616243	-	tRNA-Arg		tRNA	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0524
UPA3_0525	UPA3_0525		UPA3_0525	616246	616320	-	tRNA-Cys		tRNA	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0525
UPA3_0526	UPA3_0526		UPA3_0526	616441	617232	-	conserved hypothetical protein	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00282	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0526
UPA3_0527	UPA3_0527		UPA3_0527	617236	619467	-	ATP-dependent DNA helicase PcrA	identified by match to protein family HMM PF00580	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0527
UPA3_0528	UPA3_0528		UPA3_0528	619492	620313	-	RDD family protein	identified by match to protein family HMM PF06271	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0528
UPA3_0529	UPA3_0529		UPA3_0529	620314	621252	-	glycosyltransferase	identified by match to protein family HMM PF00535	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0529
UPA3_0530	UPA3_0530		UPA3_0530	621338	621416	-	tRNA-Arg		tRNA	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0530
UPA3_0531	UPA3_0531		UPA3_0531	621491	621569	-	tRNA-Arg		tRNA	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0531
UPA3_0532	UPA3_0532		UPA3_0532	621666	621869	+	hypothetical protein	identified by glimmer%3B putative	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0532
UPA3_0533	UPA3_0533		UPA3_0533	621859	623001	+	conserved hypothetical protein		gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0533
UPA3_0534	UPA3_0534		UPA3_0534	623024	623833	+	conserved hypothetical protein		gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0534
UPA3_0535	UPA3_0535	acpP	acpP	623850	624083	+	acyl carrier protein	identified by match to protein family HMM PF00550	gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0535
UPA3_0536	UPA3_0536		UPA3_0536	624146	624222	+	tRNA-Sec		tRNA	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0536
UPA3_0537	UPA3_0537		UPA3_0537	625189	626556	-	cytosol aminopeptidase family protein	identified by match to protein family HMM PF00883	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0537
UPA3_0538	UPA3_0538		UPA3_0538	626669	628972	-	cell division protein	identified by match to protein family HMM PF01580	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0538
UPA3_0539	UPA3_0539		UPA3_0539	628989	630659	-	conserved hypothetical protein		gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0539
UPA3_0540	UPA3_0540		UPA3_0540	630799	632775	+	ABC Transporter	identified by match to protein family HMM PF00005%3B match to protein family HMM PF03412	gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0540
UPA3_0541	UPA3_0541	cdsA	cdsA	633104	634240	-	phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0541
UPA3_0542	UPA3_0542		UPA3_0542	632780	633115	+	conserved hypothetical protein		gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0542
UPA3_0543	UPA3_0543	frr	frr	634251	634802	-	ribosome recycling factor	identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0543
UPA3_0544	UPA3_0544	pyrH	pyrH	634820	635527	-	uridylate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0544
UPA3_0545	UPA3_0545	tsf	tsf	635611	636486	-	translation elongation factor Ts	identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116	gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0545
UPA3_0546	UPA3_0546		UPA3_0546	636634	636717	-	tRNA-Leu		tRNA	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0546
UPA3_0547	UPA3_0547		UPA3_0547	636721	636798	-	tRNA-Lys		tRNA	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0547
UPA3_0549	UPA3_0549		UPA3_0549	636868	637022	-	tRNA-Thr		tRNA	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0549
UPA3_0550	UPA3_0550		UPA3_0550	637067	637221	-	tRNA-Glu		tRNA	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0550
UPA3_0552	UPA3_0552		UPA3_0552	637414	638469	+	hypothetical ferrichrome ABC transporter	identified by match to protein family HMM PF01032	gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0552
UPA3_0553	UPA3_0553		UPA3_0553	638471	639496	+	ferric anguibactin transport system permerase protein	identified by match to protein family HMM PF01032	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0553
UPA3_0554	UPA3_0554		UPA3_0554	639536	641146	+	putative ABC substrate-binding protein - iron		gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0554
UPA3_0555	UPA3_0555		UPA3_0555	641218	641436	+	conserved hypothetical protein		gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0555
UPA3_0556	UPA3_0556		UPA3_0556	641550	643343	-	putative membrane protein		gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0556
UPA3_0557	UPA3_0557		UPA3_0557	643432	645234	-	putative membrane protein		gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0557
UPA3_0558	UPA3_0558	pepF2	pepF2	645297	647132	-	oligoendopeptidase F	identified by match to protein family HMM PF01432%3B match to protein family HMM PF08439%3B match to protein family HMM TIGR00181	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0558
UPA3_0559	UPA3_0559	tuf	tuf	647227	648411	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0559
UPA3_0560	UPA3_0560	fusA	fusA	648548	650614	-	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0560
UPA3_0561	UPA3_0561	rpsG	rpsG	650641	651108	-	ribosomal protein S7	identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0561
UPA3_0562	UPA3_0562	rpsL	rpsL	651136	651561	-	ribosomal protein S12	identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0562
UPA3_0563	UPA3_0563		UPA3_0563	651747	653258	-	5'-nucleotidase%2C lipoprotein e(P4) family	identified by match to protein family HMM PF03767	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0563
UPA3_0564	UPA3_0564		UPA3_0564	653469	656384	-	protein of unknown function	identified by match to protein family HMM PF03235%3B match to protein family HMM PF07510	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0564
UPA3_0565	UPA3_0565		UPA3_0565	656388	657287	-	cytosine-specific methyltransferase	identified by match to protein family HMM PF00145	gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0565
UPA3_0566	UPA3_0566		UPA3_0566	657850	658605	+	integrase-recombinase protein	identified by match to protein family HMM PF00589	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0566
UPA3_0567	UPA3_0567		UPA3_0567	658735	660393	-	phosphomannomutase	identified by match to protein family HMM PF02878%3B match to protein family HMM PF02879	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0567
UPA3_0568	UPA3_0568	cdd	cdd	660428	660823	-	cytidine deaminase	identified by match to protein family HMM PF00383%3B match to protein family HMM TIGR01354	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0568
UPA3_0569	UPA3_0569		UPA3_0569	660948	661023	-	tRNA-Trp		tRNA	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0569
UPA3_0570	UPA3_0570		UPA3_0570	661034	662107	-	creatinase/peptidase%2C M24 family protein	identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0570
UPA3_0571	UPA3_0571	rpmG	rpmG	662118	662279	-	ribosomal protein L33	identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023	gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0571
UPA3_0572	UPA3_0572	thrS	thrS	662340	664082	-	threonyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0572
UPA3_0573	UPA3_0573	truA	truA	665128	665853	-	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0573
UPA3_0574	UPA3_0574		UPA3_0574	664235	665131	+	conserved hypothetical protein	identified by match to protein family HMM PF02645	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0574
UPA3_0575	UPA3_0575		UPA3_0575	665915	667231	-	cobalt transport protein	identified by match to protein family HMM PF02361	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0575
UPA3_0576	UPA3_0576		UPA3_0576	667232	668533	-	cobalt import ATP-binding protein CbiO 1	identified by match to protein family HMM PF00005	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0576
UPA3_0577	UPA3_0577		UPA3_0577	668521	669405	-	cobalt import ATP-binding protein CbiO 2	identified by match to protein family HMM PF00005	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0577
UPA3_0578	UPA3_0578	rplA	rplA	669545	670234	-	ribosomal protein L1	identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0578
UPA3_0579	UPA3_0579	rplK	rplK	670237	670689	-	ribosomal protein L11	identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632	gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0579
UPA3_0580	UPA3_0580		UPA3_0580	670968	677759	+	efflux ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0580
UPA3_0581	UPA3_0581		UPA3_0581	677808	679241	-	glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C B subunit	identified by match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0581
UPA3_0582	UPA3_0582		UPA3_0582	679244	680677	-	glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C A subunit	identified by match to protein family HMM PF01425	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0582
UPA3_0583	UPA3_0583		UPA3_0583	680667	680951	-	conserved hypothetical protein		gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0583
UPA3_0584	UPA3_0584		UPA3_0584	680972	682000	-	aspartyl/glutamyl-tRNA amidotransferase subunit C		gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0584
UPA3_0585	UPA3_0585	ung	ung	682027	682665	-	uracil-DNA glycosylase	identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00628	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0585
UPA3_0586	UPA3_0586		UPA3_0586	682644	684410	-	putative lipoprotein		gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0586
UPA3_0587	UPA3_0587		UPA3_0587	684413	685873	-	replicative DNA helicase	identified by match to protein family HMM PF03796	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0587
UPA3_0588	UPA3_0588	rplI	rplI	685879	686316	-	ribosomal protein L9	identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0588
UPA3_0589	UPA3_0589	rpsR	rpsR	686400	686639	-	ribosomal protein S18	identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0589
UPA3_0590	UPA3_0590	ssb	ssb	686648	687148	-	single-strand binding protein	identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0590
UPA3_0591	UPA3_0591		UPA3_0591	687193	687675	-	30S ribosomal protein S6	identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0591
UPA3_0592	UPA3_0592		UPA3_0592	687844	688353	+	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0592
UPA3_0594	UPA3_0594		UPA3_0594	689199	689687	-	conserved hypothetical protein		gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0594
UPA3_0595	UPA3_0595		UPA3_0595	689696	693091	-	bacterial extracellular solute-binding protein%2C family 5	identified by match to protein family HMM PF00496	gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0595
UPA3_0596	UPA3_0596		UPA3_0596	693110	698761	-	conserved hypothetical protein		gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0596
UPA3_0597	UPA3_0597		UPA3_0597	698780	700099	-	oligopeptide transport system permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0597
UPA3_0598	UPA3_0598		UPA3_0598	700120	701640	-	oligopeptide transport system permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0598
UPA3_0599	UPA3_0599		UPA3_0599	701644	702642	-	oligopeptide transport system permease protein	identified by match to protein family HMM PF00528	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0599
UPA3_0600	UPA3_0600		UPA3_0600	702647	703780	-	oligopeptide transport system permease protein	identified by match to protein family HMM PF00528	gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0600
UPA3_0601	UPA3_0601		UPA3_0601	703795	703965	-	conserved hypothetical protein		gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0601
UPA3_0602	UPA3_0602		UPA3_0602	704270	705463	-	putative lipoprotein		gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0602
UPA3_0603	UPA3_0603		UPA3_0603	705526	705705	-	hypothetical protein	identified by glimmer%3B putative	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0603
UPA3_0604	UPA3_0604		UPA3_0604	705893	707377	-	putative membrane protein	identified by match to protein family HMM PF02588	gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0604
UPA3_0605	UPA3_0605	rplS	rplS	707512	707883	-	ribosomal protein L19	identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024	gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0605
UPA3_0606	UPA3_0606	trmD	trmD	707893	708579	-	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088	gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0606
UPA3_0607	UPA3_0607	rpsP	rpsP	708592	708888	-	ribosomal protein S16	identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002	gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0607
UPA3_0608	UPA3_0608		UPA3_0608	708984	709817	-	conserved hypothetical protein	identified by match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0608
UPA3_0609	UPA3_0609		UPA3_0609	709848	711638	-	metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0609
UPA3_0610	UPA3_0610		UPA3_0610	711878	715981	-	viral phosphatase		gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0610
UPA3_0611	UPA3_0611		UPA3_0611	716177	717913	+	conserved hypothetical protein		gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0611
UPA3_0612	UPA3_0612		UPA3_0612	717978	719264	+	potassium channel protein	identified by match to protein family HMM PF07885	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0612
UPA3_0613	UPA3_0613		UPA3_0613	719302	720219	-	conserved hypothetical protein		gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0613
UPA3_0614	UPA3_0614		UPA3_0614	720225	721178	-	conserved hypothetical protein		gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0614
UPA3_0615	UPA3_0615	rpsI	rpsI	721248	721649	-	ribosomal protein S9	identified by match to protein family HMM PF00380	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0615
UPA3_0616	UPA3_0616	rplM	rplM	721669	722115	-	ribosomal protein L13	identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0616
UPA3_0617	UPA3_0617		UPA3_0617	722429	724009	+	putative lipoprotein		gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0617
UPA3_0618	UPA3_0618		UPA3_0618	724204	725817	+	amino acid transporter protein	identified by match to protein family HMM PF00324%3B match to protein family HMM PF01490	gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0618
UPA3_0619	UPA3_0619		UPA3_0619	726014	726514	+	preprotein translocase%2C SecE subunit family	identified by match to protein family HMM TIGR00964	gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0619
UPA3_0620	UPA3_0620		UPA3_0620	726540	727316	+	transcription termination/antitermination factor NusG	identified by match to protein family HMM PF02357%3B match to protein family HMM TIGR01956	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0620
UPA3_0621	UPA3_0621		UPA3_0621	727803	729134	-	ATP-dependent RNA helicase	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0621
UPA3_0622	UPA3_0622		UPA3_0622	729135	730739	-	dna damage inducible protein - mate transporter family	identified by match to protein family HMM PF01554	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0622
UPA3_0623	UPA3_0623		UPA3_0623	731213	732775	-	dna damage inducible protein - mate transporter family	identified by match to protein family HMM PF01554	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0623
UPA3_0624	UPA3_0624	deoC	deoC	732924	733571	-	deoxyribose-phosphate aldolase	identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0624
UPA3_0625	UPA3_0625	tkt	tkt	733583	735544	-	transketolase	identified by match to protein family HMM PF00456%3B match to protein family HMM PF02779	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0625
UPA3_0626	UPA3_0626		UPA3_0626	735574	735837	-	phosphohistidinoprotein-hexose phosphotransferase	identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0626
UPA3_0627	UPA3_0627		UPA3_0627	735937	737535	-	cardiolipin synthase	identified by match to protein family HMM PF00614	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0627
UPA3_0628	UPA3_0628		UPA3_0628	737613	737703	-	tRNA-Ser		tRNA	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0628
UPA3_0629	UPA3_0629		UPA3_0629	737792	738112	-	thioredoxin	identified by match to protein family HMM PF00085	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0629
UPA3_0630	UPA3_0630	topA	topA	738141	740186	-	DNA topoisomerase I	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0630
UPA3_0631	UPA3_0631		UPA3_0631	740249	740959	-	conserved hypothetical protein		gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0631
UPA3_0632	UPA3_0632		UPA3_0632	741010	741831	-	GTPase	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00650	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0632
UPA3_0633	UPA3_0633		UPA3_0633	741843	742283	-	conserved hypothetical protein		gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0633
UPA3_0634	UPA3_0634	tdk	tdk	742320	742991	-	thymidine kinase	identified by match to protein family HMM PF00265	gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0634
UPA3_0635	UPA3_0635	ychF	ychF	742998	744104	-	GTP-binding protein YchF	identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0635
UPA3_0636	UPA3_0636	fba	fba	744115	744987	-	fructose-1%2C6-bisphosphate aldolase%2C class II	identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01859	gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0636
UPA3_0637	UPA3_0637	rpoE	rpoE	744992	745474	-	DNA-directed RNA polymerase%2C delta subunit	identified by match to protein family HMM PF05066	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0637
UPA3_0638	UPA3_0638		UPA3_0638	745522	746739	-	HD domain protein	identified by match to protein family HMM PF01966	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0638
UPA3_0639	UPA3_0639	gltX	gltX	746748	748196	-	glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0639
UPA3_0640	UPA3_0640		UPA3_0640	748186	748983	-	GHMP kinase%2C ATP-binding domain protein	identified by match to protein family HMM PF00288	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0640
UPA3_0641	UPA3_0641	ksgA	ksgA	749017	749850	-	dimethyladenosine transferase	identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0641
UPA3_0642	UPA3_0642		UPA3_0642	749852	751003	-	membrane protein OxaA	identified by match to protein family HMM PF02096	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0642
UPA3_0643	UPA3_0643	rnpA	rnpA	751042	751383	-	ribonuclease P protein component	identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0643
UPA3_0644	UPA3_0644	rpmH	rpmH	751389	751535	-	ribosomal protein L34	identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0644
UPA3_0645	UPA3_0645	srpB	srpB	152494	152596	-	bacterial signal recognition particle RNA		gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0645
UPA3_0647	UPA3_0647		UPA3_0647	688458	688870	-	putative tmRNA		tmRNA	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=UPA3_0647