locus-tag class description DSM104440_00001 PF11638 DnaA N-terminal domain DSM104440_00001 PF08299 Bacterial dnaA protein helix-turn-helix DSM104440_00001 PF00308 Bacterial dnaA protein DSM104440_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain DSM104440_00002 PF02767 DNA polymerase III beta subunit, central domain DSM104440_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain DSM104440_00003 PF01751 Toprim domain DSM104440_00003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00003 PF18053 DNA gyrase B subunit insert domain DSM104440_00003 PF00204 DNA gyrase B DSM104440_00003 PF00986 DNA gyrase B subunit, carboxyl terminus DSM104440_00004 PF01751 Toprim domain DSM104440_00004 PF13368 Topoisomerase C-terminal repeat DSM104440_00004 PF01131 DNA topoisomerase DSM104440_00005 PF02481 DNA recombination-mediator protein A DSM104440_00005 PF17782 DprA winged helix domain DSM104440_00006 PF01476 LysM domain DSM104440_00006 PF05257 CHAP domain DSM104440_00007 PF01327 Polypeptide deformylase DSM104440_00008 PF00551 Formyl transferase DSM104440_00008 PF02911 Formyl transferase, C-terminal domain DSM104440_00010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00010 PF00989 PAS fold DSM104440_00010 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00010 PF00672 HAMP domain DSM104440_00011 PF00072 Response regulator receiver domain DSM104440_00011 PF00158 Sigma-54 interaction domain DSM104440_00011 PF02954 Bacterial regulatory protein, Fis family DSM104440_00014 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104440_00014 PF00005 ABC transporter DSM104440_00015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104440_00015 PF00005 ABC transporter DSM104440_00016 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00016 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104440_00017 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00018 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_00020 PF01761 3-dehydroquinate synthase DSM104440_00021 PF01202 Shikimate kinase DSM104440_00022 PF11741 AMIN domain DSM104440_00022 PF00263 Bacterial type II and III secretion system protein DSM104440_00022 PF03958 Bacterial type II/III secretion system short domain DSM104440_00022 PF07660 Secretin and TonB N terminus short domain DSM104440_00023 PF04351 Pilus assembly protein, PilP DSM104440_00024 PF04350 Pilus assembly protein, PilO DSM104440_00025 PF05137 Fimbrial assembly protein (PilN) DSM104440_00026 PF11104 Type IV pilus assembly protein PilM; DSM104440_00027 PF00912 Transglycosylase DSM104440_00027 PF00905 Penicillin binding protein transpeptidase domain DSM104440_00027 PF17092 Penicillin-binding protein OB-like domain DSM104440_00029 PF00490 Delta-aminolevulinic acid dehydratase DSM104440_00030 PF01926 50S ribosome-binding GTPase DSM104440_00031 PF00034 Cytochrome c DSM104440_00032 PF00563 EAL domain DSM104440_00032 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00032 PF03707 Bacterial signalling protein N terminal repeat DSM104440_00033 PF00202 Aminotransferase class-III DSM104440_00034 PF02581 Thiamine monophosphate synthase DSM104440_00035 PF08543 Phosphomethylpyrimidine kinase DSM104440_00036 PF00301 Rubredoxin DSM104440_00037 PF00072 Response regulator receiver domain DSM104440_00038 PF00072 Response regulator receiver domain DSM104440_00040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104440_00040 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DSM104440_00041 PF00072 Response regulator receiver domain DSM104440_00041 PF01627 Hpt domain DSM104440_00041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00041 PF02895 Signal transducing histidine kinase, homodimeric domain DSM104440_00041 PF01584 CheW-like domain DSM104440_00042 PF04616 Glycosyl hydrolases family 43 DSM104440_00042 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DSM104440_00044 PF00561 alpha/beta hydrolase fold DSM104440_00046 PF02673 Bacitracin resistance protein BacA DSM104440_00049 PF01964 Radical SAM ThiC family DSM104440_00049 PF13667 ThiC-associated domain DSM104440_00052 PF00005 ABC transporter DSM104440_00055 PF02321 Outer membrane efflux protein DSM104440_00056 PF00534 Glycosyl transferases group 1 DSM104440_00056 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DSM104440_00057 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104440_00058 PF00535 Glycosyl transferase family 2 DSM104440_00059 PF16363 GDP-mannose 4,6 dehydratase DSM104440_00060 PF00483 Nucleotidyl transferase DSM104440_00061 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DSM104440_00062 PF04321 RmlD substrate binding domain DSM104440_00065 PF02254 TrkA-N domain DSM104440_00065 PF02080 TrkA-C domain DSM104440_00065 PF00999 Sodium/hydrogen exchanger family DSM104440_00066 PF01380 SIS domain DSM104440_00066 PF00571 CBS domain DSM104440_00070 PF00005 ABC transporter DSM104440_00071 PF04963 Sigma-54 factor, core binding domain DSM104440_00071 PF04552 Sigma-54, DNA binding domain DSM104440_00071 PF00309 Sigma-54 factor, Activator interacting domain (AID) DSM104440_00072 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DSM104440_00073 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DSM104440_00074 PF07475 HPr Serine kinase C-terminal domain DSM104440_00074 PF02603 HPr Serine kinase N terminus DSM104440_00075 PF03668 P-loop ATPase protein family DSM104440_00077 PF00633 Helix-hairpin-helix motif DSM104440_00077 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104440_00077 PF14815 NUDIX domain DSM104440_00079 PF06580 Histidine kinase DSM104440_00079 PF07694 5TMR of 5TMR-LYT DSM104440_00080 PF00072 Response regulator receiver domain DSM104440_00080 PF04397 LytTr DNA-binding domain DSM104440_00081 PF05690 Thiazole biosynthesis protein ThiG DSM104440_00081 PF02597 ThiS family DSM104440_00082 PF05690 Thiazole biosynthesis protein ThiG DSM104440_00084 PF02390 Putative methyltransferase DSM104440_00086 PF06969 HemN C-terminal domain DSM104440_00086 PF04055 Radical SAM superfamily DSM104440_00087 PF01725 Ham1 family DSM104440_00088 PF01138 3' exoribonuclease family, domain 1 DSM104440_00088 PF03725 3' exoribonuclease family, domain 2 DSM104440_00090 PF00069 Protein kinase domain DSM104440_00090 PF03793 PASTA domain DSM104440_00091 PF03755 YicC-like family, N-terminal region DSM104440_00091 PF08340 Domain of unknown function (DUF1732) DSM104440_00092 PF00625 Guanylate kinase DSM104440_00093 PF01192 RNA polymerase Rpb6 DSM104440_00094 PF02824 TGS domain DSM104440_00094 PF04607 Region found in RelA / SpoT proteins DSM104440_00094 PF13291 ACT domain DSM104440_00095 PF01042 Endoribonuclease L-PSP DSM104440_00096 PF00270 DEAD/DEAH box helicase DSM104440_00096 PF00271 Helicase conserved C-terminal domain DSM104440_00096 PF17191 RecG wedge domain DSM104440_00097 PF04345 Chorismate lyase DSM104440_00098 PF01040 UbiA prenyltransferase family DSM104440_00099 PF02525 Flavodoxin-like fold DSM104440_00100 PF02254 TrkA-N domain DSM104440_00100 PF00999 Sodium/hydrogen exchanger family DSM104440_00101 PF02803 Thiolase, C-terminal domain DSM104440_00101 PF00108 Thiolase, N-terminal domain DSM104440_00104 PF01979 Amidohydrolase family DSM104440_00105 PF00916 Sulfate permease family DSM104440_00105 PF01740 STAS domain DSM104440_00106 PF00486 Transcriptional regulatory protein, C terminal DSM104440_00106 PF00072 Response regulator receiver domain DSM104440_00107 PF08448 PAS fold DSM104440_00107 PF13188 PAS domain DSM104440_00107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00107 PF00072 Response regulator receiver domain DSM104440_00107 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00114 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system DSM104440_00129 PF00589 Phage integrase family DSM104440_00129 PF02899 Phage integrase, N-terminal SAM-like domain DSM104440_00130 PF00437 Type II/IV secretion system protein DSM104440_00131 PF00437 Type II/IV secretion system protein DSM104440_00132 PF01168 Alanine racemase, N-terminal domain DSM104440_00133 PF03807 NADP oxidoreductase coenzyme F420-dependent DSM104440_00133 PF14748 Pyrroline-5-carboxylate reductase dimerisation DSM104440_00134 PF02325 YGGT family DSM104440_00135 PF00501 AMP-binding enzyme DSM104440_00135 PF13193 AMP-binding enzyme C-terminal domain DSM104440_00136 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_00136 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_00136 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_00137 PF01636 Phosphotransferase enzyme family DSM104440_00139 PF00108 Thiolase, N-terminal domain DSM104440_00139 PF02803 Thiolase, C-terminal domain DSM104440_00140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104440_00140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104440_00140 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_00141 PF00005 ABC transporter DSM104440_00142 PF00005 ABC transporter DSM104440_00143 PF02653 Branched-chain amino acid transport system / permease component DSM104440_00144 PF02653 Branched-chain amino acid transport system / permease component DSM104440_00145 PF13458 Periplasmic binding protein DSM104440_00146 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_00146 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_00146 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_00147 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_00147 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_00147 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_00148 PF04029 2-phosphosulpholactate phosphatase DSM104440_00149 PF00106 short chain dehydrogenase DSM104440_00150 PF00107 Zinc-binding dehydrogenase DSM104440_00150 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_00151 PF09339 IclR helix-turn-helix domain DSM104440_00151 PF01614 Bacterial transcriptional regulator DSM104440_00156 PF10150 Ribonuclease E/G family DSM104440_00156 PF00575 S1 RNA binding domain DSM104440_00157 PF02545 Maf-like protein DSM104440_00158 PF02590 Predicted SPOUT methyltransferase DSM104440_00160 PF01467 Cytidylyltransferase-like DSM104440_00161 PF00171 Aldehyde dehydrogenase family DSM104440_00164 PF00133 tRNA synthetases class I (I, L, M and V) DSM104440_00164 PF08264 Anticodon-binding domain of tRNA DSM104440_00164 PF13603 Leucyl-tRNA synthetase, Domain 2 DSM104440_00164 PF09334 tRNA synthetases class I (M) DSM104440_00170 PF00580 UvrD/REP helicase N-terminal domain DSM104440_00170 PF13361 UvrD-like helicase C-terminal domain DSM104440_00173 PF01636 Phosphotransferase enzyme family DSM104440_00175 PF03641 Possible lysine decarboxylase DSM104440_00176 PF01612 3'-5' exonuclease DSM104440_00176 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DSM104440_00176 PF01367 5'-3' exonuclease, C-terminal SAM fold DSM104440_00176 PF00476 DNA polymerase family A DSM104440_00177 PF01300 Telomere recombination DSM104440_00177 PF03481 Putative GTP-binding controlling metal-binding DSM104440_00179 PF00027 Cyclic nucleotide-binding domain DSM104440_00179 PF13545 Crp-like helix-turn-helix domain DSM104440_00182 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_00182 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DSM104440_00184 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_00185 PF05378 Hydantoinase/oxoprolinase N-terminal region DSM104440_00185 PF01968 Hydantoinase/oxoprolinase DSM104440_00189 PF01207 Dihydrouridine synthase (Dus) DSM104440_00190 PF02954 Bacterial regulatory protein, Fis family DSM104440_00191 PF01808 AICARFT/IMPCHase bienzyme DSM104440_00191 PF02142 MGS-like domain DSM104440_00192 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DSM104440_00192 PF02844 Phosphoribosylglycinamide synthetase, N domain DSM104440_00192 PF02843 Phosphoribosylglycinamide synthetase, C domain DSM104440_00196 PF01218 Coproporphyrinogen III oxidase DSM104440_00200 PF03793 PASTA domain DSM104440_00200 PF00069 Protein kinase domain DSM104440_00201 PF00072 Response regulator receiver domain DSM104440_00201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00201 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00201 PF08448 PAS fold DSM104440_00201 PF13188 PAS domain DSM104440_00202 PF00005 ABC transporter DSM104440_00203 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104440_00203 PF00005 ABC transporter DSM104440_00204 PF02653 Branched-chain amino acid transport system / permease component DSM104440_00204 PF11862 Domain of unknown function (DUF3382) DSM104440_00205 PF02653 Branched-chain amino acid transport system / permease component DSM104440_00206 PF13458 Periplasmic binding protein DSM104440_00207 PF13458 Periplasmic binding protein DSM104440_00209 PF03190 Protein of unknown function, DUF255 DSM104440_00212 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DSM104440_00212 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DSM104440_00213 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104440_00213 PF06029 AlkA N-terminal domain DSM104440_00219 PF00248 Aldo/keto reductase family DSM104440_00221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00221 PF03466 LysR substrate binding domain DSM104440_00224 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00225 PF00920 Dehydratase family DSM104440_00227 PF01790 Prolipoprotein diacylglyceryl transferase DSM104440_00232 PF02515 CoA-transferase family III DSM104440_00241 PF00072 Response regulator receiver domain DSM104440_00241 PF00196 Bacterial regulatory proteins, luxR family DSM104440_00243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00243 PF07730 Histidine kinase DSM104440_00243 PF00672 HAMP domain DSM104440_00245 PF07043 Protein of unknown function (DUF1328) DSM104440_00248 PF05957 Bacterial protein of unknown function (DUF883) DSM104440_00249 PF04972 BON domain DSM104440_00252 PF05532 CsbD-like DSM104440_00253 PF01594 AI-2E family transporter DSM104440_00255 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DSM104440_00255 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DSM104440_00256 PF00072 Response regulator receiver domain DSM104440_00256 PF00486 Transcriptional regulatory protein, C terminal DSM104440_00257 PF00672 HAMP domain DSM104440_00257 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00257 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00258 PF08448 PAS fold DSM104440_00258 PF08447 PAS fold DSM104440_00258 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00258 PF00563 EAL domain DSM104440_00261 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104440_00262 PF03881 Fructosamine kinase DSM104440_00265 PF00589 Phage integrase family DSM104440_00265 PF13495 Phage integrase, N-terminal SAM-like domain DSM104440_00274 PF13184 NusA-like KH domain DSM104440_00274 PF08529 NusA N-terminal domain DSM104440_00305 PF00265 Thymidine kinase DSM104440_00307 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_00315 PF01022 Bacterial regulatory protein, arsR family DSM104440_00326 PF03060 Nitronate monooxygenase DSM104440_00334 PF01230 HIT domain DSM104440_00350 PF04229 GrpB protein DSM104440_00350 PF13673 Acetyltransferase (GNAT) domain DSM104440_00357 PF01938 TRAM domain DSM104440_00357 PF05958 tRNA (Uracil-5-)-methyltransferase DSM104440_00358 PF00583 Acetyltransferase (GNAT) family DSM104440_00361 PF00563 EAL domain DSM104440_00361 PF01590 GAF domain DSM104440_00361 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00361 PF00360 Phytochrome region DSM104440_00374 PF10502 Signal peptidase, peptidase S26 DSM104440_00375 PF00005 ABC transporter DSM104440_00376 PF01032 FecCD transport family DSM104440_00377 PF01497 Periplasmic binding protein DSM104440_00378 PF01841 Transglutaminase-like superfamily DSM104440_00379 PF12727 PBP superfamily domain DSM104440_00379 PF12728 Helix-turn-helix domain DSM104440_00381 PF12849 PBP superfamily domain DSM104440_00382 PF00005 ABC transporter DSM104440_00383 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00384 PF00005 ABC transporter DSM104440_00384 PF03459 TOBE domain DSM104440_00385 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00388 PF00462 Glutaredoxin DSM104440_00390 PF17827 PrmC N-terminal domain DSM104440_00390 PF05175 Methyltransferase small domain DSM104440_00391 PF03462 PCRF domain DSM104440_00391 PF00472 RF-1 domain DSM104440_00392 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DSM104440_00392 PF01488 Shikimate / quinate 5-dehydrogenase DSM104440_00392 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DSM104440_00393 PF00255 Glutathione peroxidase DSM104440_00394 PF00437 Type II/IV secretion system protein DSM104440_00394 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104440_00395 PF00482 Type II secretion system (T2SS), protein F DSM104440_00396 PF06750 Bacterial Peptidase A24 N-terminal domain DSM104440_00396 PF01478 Type IV leader peptidase family DSM104440_00397 PF01121 Dephospho-CoA kinase DSM104440_00398 PF07072 Cell division protein DSM104440_00399 PF03884 DNA gyrase inhibitor YacG DSM104440_00401 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DSM104440_00401 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DSM104440_00402 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104440_00404 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DSM104440_00406 PF00510 Cytochrome c oxidase subunit III DSM104440_00410 PF01040 UbiA prenyltransferase family DSM104440_00411 PF02630 SCO1/SenC DSM104440_00412 PF04545 Sigma-70, region 4 DSM104440_00412 PF04542 Sigma-70 region 2 DSM104440_00412 PF00140 Sigma-70 factor, region 1.2 DSM104440_00413 PF18075 FtsX extracellular domain DSM104440_00414 PF00005 ABC transporter DSM104440_00415 PF02881 SRP54-type protein, helical bundle domain DSM104440_00415 PF00448 SRP54-type protein, GTPase domain DSM104440_00417 PF01467 Cytidylyltransferase-like DSM104440_00418 PF00037 4Fe-4S binding domain DSM104440_00419 PF00350 Dynamin family DSM104440_00420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DSM104440_00420 PF06827 Zinc finger found in FPG and IleRS DSM104440_00420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DSM104440_00422 PF03550 Outer membrane lipoprotein LolB DSM104440_00423 PF00288 GHMP kinases N terminal domain DSM104440_00423 PF08544 GHMP kinases C terminal DSM104440_00425 PF14572 Phosphoribosyl synthetase-associated domain DSM104440_00425 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DSM104440_00426 PF14693 Ribosomal protein TL5, C-terminal domain DSM104440_00426 PF01386 Ribosomal L25p family DSM104440_00427 PF01195 Peptidyl-tRNA hydrolase DSM104440_00428 PF01926 50S ribosome-binding GTPase DSM104440_00428 PF06071 Protein of unknown function (DUF933) DSM104440_00429 PF01740 STAS domain DSM104440_00429 PF00916 Sulfate permease family DSM104440_00434 PF00135 Carboxylesterase family DSM104440_00436 PF13193 AMP-binding enzyme C-terminal domain DSM104440_00436 PF00501 AMP-binding enzyme DSM104440_00438 PF00135 Carboxylesterase family DSM104440_00439 PF13458 Periplasmic binding protein DSM104440_00440 PF02653 Branched-chain amino acid transport system / permease component DSM104440_00442 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104440_00442 PF00005 ABC transporter DSM104440_00443 PF00005 ABC transporter DSM104440_00444 PF00106 short chain dehydrogenase DSM104440_00445 PF03167 Uracil DNA glycosylase superfamily DSM104440_00446 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00448 PF05736 OprF membrane domain DSM104440_00448 PF00691 OmpA family DSM104440_00450 PF01938 TRAM domain DSM104440_00450 PF00919 Uncharacterized protein family UPF0004 DSM104440_00450 PF04055 Radical SAM superfamily DSM104440_00452 PF02562 PhoH-like protein DSM104440_00453 PF02130 Uncharacterized protein family UPF0054 DSM104440_00454 PF03471 Transporter associated domain DSM104440_00454 PF00571 CBS domain DSM104440_00455 PF00795 Carbon-nitrogen hydrolase DSM104440_00456 PF00535 Glycosyl transferase family 2 DSM104440_00459 PF02091 Glycyl-tRNA synthetase alpha subunit DSM104440_00460 PF02092 Glycyl-tRNA synthetase beta subunit DSM104440_00460 PF05746 DALR anticodon binding domain DSM104440_00464 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_00465 PF00398 Ribosomal RNA adenine dimethylase DSM104440_00466 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DSM104440_00467 PF09312 SurA N-terminal domain DSM104440_00467 PF00639 PPIC-type PPIASE domain DSM104440_00468 PF03968 OstA-like protein DSM104440_00468 PF04453 LPS transport system D DSM104440_00469 PF01636 Phosphotransferase enzyme family DSM104440_00470 PF00483 Nucleotidyl transferase DSM104440_00471 PF05195 Aminopeptidase P, N-terminal domain DSM104440_00471 PF00557 Metallopeptidase family M24 DSM104440_00472 PF01494 FAD binding domain DSM104440_00473 PF01494 FAD binding domain DSM104440_00474 PF13098 Thioredoxin-like domain DSM104440_00474 PF10411 Disulfide bond isomerase protein N-terminus DSM104440_00475 PF03562 MltA specific insert domain DSM104440_00475 PF06725 3D domain DSM104440_00476 PF04379 ApaG domain DSM104440_00477 PF00834 Ribulose-phosphate 3 epimerase family DSM104440_00478 PF04715 Anthranilate synthase component I, N terminal region DSM104440_00478 PF00425 chorismate binding enzyme DSM104440_00479 PF00117 Glutamine amidotransferase class-I DSM104440_00480 PF02885 Glycosyl transferase family, helical bundle domain DSM104440_00480 PF00591 Glycosyl transferase family, a/b domain DSM104440_00481 PF00218 Indole-3-glycerol phosphate synthase DSM104440_00482 PF00267 Gram-negative porin DSM104440_00483 PF03232 Ubiquinone biosynthesis protein COQ7 DSM104440_00484 PF02566 OsmC-like protein DSM104440_00485 PF01594 AI-2E family transporter DSM104440_00486 PF00572 Ribosomal protein L13 DSM104440_00487 PF00380 Ribosomal protein S9/S16 DSM104440_00488 PF02774 Semialdehyde dehydrogenase, dimerisation domain DSM104440_00488 PF01118 Semialdehyde dehydrogenase, NAD binding domain DSM104440_00491 PF01521 Iron-sulphur cluster biosynthesis DSM104440_00492 PF03702 Anhydro-N-acetylmuramic acid kinase DSM104440_00493 PF01551 Peptidase family M23 DSM104440_00494 PF00579 tRNA synthetases class I (W and Y) DSM104440_00494 PF01479 S4 domain DSM104440_00499 PF03795 YCII-related domain DSM104440_00500 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_00505 PF11940 Domain of unknown function (DUF3458) Ig-like fold DSM104440_00505 PF01433 Peptidase family M1 domain DSM104440_00505 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DSM104440_00506 PF00270 DEAD/DEAH box helicase DSM104440_00506 PF00271 Helicase conserved C-terminal domain DSM104440_00507 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00508 PF03466 LysR substrate binding domain DSM104440_00508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00509 PF00890 FAD binding domain DSM104440_00509 PF14537 Cytochrome c3 DSM104440_00511 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_00512 PF00596 Class II Aldolase and Adducin N-terminal domain DSM104440_00516 PF00005 ABC transporter DSM104440_00516 PF17755 UvrA DNA-binding domain DSM104440_00516 PF17760 UvrA interaction domain DSM104440_00518 PF01274 Malate synthase DSM104440_00519 PF00463 Isocitrate lyase family DSM104440_00520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00520 PF03466 LysR substrate binding domain DSM104440_00523 PF01593 Flavin containing amine oxidoreductase DSM104440_00530 PF02310 B12 binding domain DSM104440_00530 PF13411 MerR HTH family regulatory protein DSM104440_00530 PF02607 B12 binding domain DSM104440_00531 PF01266 FAD dependent oxidoreductase DSM104440_00531 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DSM104440_00532 PF00085 Thioredoxin DSM104440_00537 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00538 PF01557 Fumarylacetoacetate (FAA) hydrolase family DSM104440_00540 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00541 PF00753 Metallo-beta-lactamase superfamily DSM104440_00541 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104440_00543 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00548 PF08448 PAS fold DSM104440_00548 PF13426 PAS domain DSM104440_00548 PF08447 PAS fold DSM104440_00548 PF05231 MASE1 DSM104440_00548 PF00563 EAL domain DSM104440_00548 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00549 PF00005 ABC transporter DSM104440_00551 PF08281 Sigma-70, region 4 DSM104440_00551 PF04542 Sigma-70 region 2 DSM104440_00554 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00557 PF04134 Protein of unknown function, DUF393 DSM104440_00559 PF00202 Aminotransferase class-III DSM104440_00566 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00567 PF00920 Dehydratase family DSM104440_00568 PF01070 FMN-dependent dehydrogenase DSM104440_00569 PF12848 ABC transporter DSM104440_00569 PF00005 ABC transporter DSM104440_00570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_00575 PF00149 Calcineurin-like phosphoesterase DSM104440_00578 PF07043 Protein of unknown function (DUF1328) DSM104440_00582 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DSM104440_00583 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_00584 PF00873 AcrB/AcrD/AcrF family DSM104440_00585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_00586 PF02469 Fasciclin domain DSM104440_00587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00587 PF03466 LysR substrate binding domain DSM104440_00588 PF03741 Integral membrane protein TerC family DSM104440_00589 PF06123 Inner membrane protein CreD DSM104440_00591 PF02666 Phosphatidylserine decarboxylase DSM104440_00593 PF00486 Transcriptional regulatory protein, C terminal DSM104440_00593 PF00072 Response regulator receiver domain DSM104440_00595 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104440_00595 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DSM104440_00601 PF00226 DnaJ domain DSM104440_00601 PF00684 DnaJ central domain DSM104440_00601 PF01556 DnaJ C terminal domain DSM104440_00604 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DSM104440_00606 PF03572 Peptidase family S41 DSM104440_00606 PF01471 Putative peptidoglycan binding domain DSM104440_00606 PF17820 PDZ domain DSM104440_00610 PF03309 Type III pantothenate kinase DSM104440_00611 PF08279 HTH domain DSM104440_00611 PF02237 Biotin protein ligase C terminal domain DSM104440_00611 PF03099 Biotin/lipoate A/B protein ligase family DSM104440_00614 PF04107 Glutamate-cysteine ligase family 2(GCS2) DSM104440_00616 PF03734 L,D-transpeptidase catalytic domain DSM104440_00616 PF01476 LysM domain DSM104440_00617 PF02913 FAD linked oxidases, C-terminal domain DSM104440_00617 PF01565 FAD binding domain DSM104440_00618 PF01467 Cytidylyltransferase-like DSM104440_00619 PF04972 BON domain DSM104440_00620 PF13580 SIS domain DSM104440_00621 PF02021 Uncharacterised protein family UPF0102 DSM104440_00622 PF04348 LppC putative lipoprotein DSM104440_00623 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104440_00624 PF01979 Amidohydrolase family DSM104440_00634 PF02381 MraZ protein, putative antitoxin-like DSM104440_00635 PF01795 MraW methylase family DSM104440_00636 PF04999 Cell division protein FtsL DSM104440_00637 PF03717 Penicillin-binding Protein dimerisation domain DSM104440_00637 PF00905 Penicillin binding protein transpeptidase domain DSM104440_00638 PF02875 Mur ligase family, glutamate ligase domain DSM104440_00638 PF08245 Mur ligase middle domain DSM104440_00638 PF01225 Mur ligase family, catalytic domain DSM104440_00639 PF08245 Mur ligase middle domain DSM104440_00639 PF02875 Mur ligase family, glutamate ligase domain DSM104440_00639 PF01225 Mur ligase family, catalytic domain DSM104440_00640 PF00953 Glycosyl transferase family 4 DSM104440_00640 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DSM104440_00642 PF08245 Mur ligase middle domain DSM104440_00642 PF02875 Mur ligase family, glutamate ligase domain DSM104440_00643 PF01098 Cell cycle protein DSM104440_00644 PF03033 Glycosyltransferase family 28 N-terminal domain DSM104440_00644 PF04101 Glycosyltransferase family 28 C-terminal domain DSM104440_00645 PF08245 Mur ligase middle domain DSM104440_00645 PF02875 Mur ligase family, glutamate ligase domain DSM104440_00645 PF01225 Mur ligase family, catalytic domain DSM104440_00646 PF01565 FAD binding domain DSM104440_00646 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DSM104440_00647 PF01820 D-ala D-ala ligase N-terminus DSM104440_00647 PF07478 D-ala D-ala ligase C-terminus DSM104440_00648 PF08478 POTRA domain, FtsQ-type DSM104440_00648 PF03799 Cell division protein FtsQ DSM104440_00649 PF02491 SHS2 domain inserted in FTSA DSM104440_00650 PF12327 FtsZ family, C-terminal domain DSM104440_00650 PF00091 Tubulin/FtsZ family, GTPase domain DSM104440_00651 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DSM104440_00653 PF01551 Peptidase family M23 DSM104440_00654 PF07516 SecA Wing and Scaffold domain DSM104440_00654 PF02810 SEC-C motif DSM104440_00654 PF07517 SecA DEAD-like domain DSM104440_00654 PF01043 SecA preprotein cross-linking domain DSM104440_00655 PF01960 ArgJ family DSM104440_00656 PF01209 ubiE/COQ5 methyltransferase family DSM104440_00658 PF00293 NUDIX domain DSM104440_00659 PF02560 Cyanate lyase C-terminal domain DSM104440_00660 PF00005 ABC transporter DSM104440_00661 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00663 PF13419 Haloacid dehalogenase-like hydrolase DSM104440_00665 PF08241 Methyltransferase domain DSM104440_00666 PF00561 alpha/beta hydrolase fold DSM104440_00667 PF00155 Aminotransferase class I and II DSM104440_00668 PF04055 Radical SAM superfamily DSM104440_00668 PF06968 Biotin and Thiamin Synthesis associated domain DSM104440_00669 PF00156 Phosphoribosyl transferase domain DSM104440_00670 PF00588 SpoU rRNA Methylase family DSM104440_00681 PF00577 Outer membrane usher protein DSM104440_00681 PF13954 PapC N-terminal domain DSM104440_00681 PF13953 PapC C-terminal domain DSM104440_00683 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DSM104440_00683 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DSM104440_00685 PF02556 Preprotein translocase subunit SecB DSM104440_00686 PF00462 Glutaredoxin DSM104440_00687 PF00581 Rhodanese-like domain DSM104440_00690 PF00300 Histidine phosphatase superfamily (branch 1) DSM104440_00691 PF01551 Peptidase family M23 DSM104440_00692 PF03572 Peptidase family S41 DSM104440_00692 PF13180 PDZ domain DSM104440_00693 PF00899 ThiF family DSM104440_00697 PF00814 Glycoprotease family DSM104440_00698 PF01165 Ribosomal protein S21 DSM104440_00699 PF09424 Yqey-like protein DSM104440_00700 PF01807 CHC2 zinc finger DSM104440_00700 PF10410 DnaB-helicase binding domain of primase DSM104440_00700 PF08278 DNA primase DnaG DnaB-binding DSM104440_00700 PF08275 DNA primase catalytic core, N-terminal domain DSM104440_00701 PF03979 Sigma-70 factor, region 1.1 DSM104440_00701 PF04546 Sigma-70, non-essential region DSM104440_00701 PF00140 Sigma-70 factor, region 1.2 DSM104440_00701 PF04542 Sigma-70 region 2 DSM104440_00701 PF04539 Sigma-70 region 3 DSM104440_00701 PF04545 Sigma-70, region 4 DSM104440_00702 PF07885 Ion channel DSM104440_00702 PF00027 Cyclic nucleotide-binding domain DSM104440_00705 PF00069 Protein kinase domain DSM104440_00707 PF13380 CoA binding domain DSM104440_00709 PF16200 C-terminal region of band_7 DSM104440_00709 PF01145 SPFH domain / Band 7 family DSM104440_00710 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104440_00712 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_00713 PF01522 Polysaccharide deacetylase DSM104440_00715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_00715 PF09317 Domain of unknown function (DUF1974) DSM104440_00715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_00715 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_00716 PF00108 Thiolase, N-terminal domain DSM104440_00716 PF02803 Thiolase, C-terminal domain DSM104440_00718 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_00718 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104440_00718 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104440_00722 PF00501 AMP-binding enzyme DSM104440_00723 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_00724 PF16884 N-terminal domain of oxidoreductase DSM104440_00724 PF00107 Zinc-binding dehydrogenase DSM104440_00725 PF03061 Thioesterase superfamily DSM104440_00726 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_00726 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104440_00726 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104440_00728 PF00108 Thiolase, N-terminal domain DSM104440_00728 PF02803 Thiolase, C-terminal domain DSM104440_00730 PF07044 Protein of unknown function (DUF1329) DSM104440_00737 PF08534 Redoxin DSM104440_00738 PF01810 LysE type translocator DSM104440_00739 PF00106 short chain dehydrogenase DSM104440_00740 PF11798 IMS family HHH motif DSM104440_00740 PF00817 impB/mucB/samB family DSM104440_00740 PF11799 impB/mucB/samB family C-terminal domain DSM104440_00742 PF13185 GAF domain DSM104440_00744 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104440_00744 PF00326 Prolyl oligopeptidase family DSM104440_00749 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DSM104440_00751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104440_00751 PF00672 HAMP domain DSM104440_00751 PF02203 Tar ligand binding domain homologue DSM104440_00755 PF01268 Formate--tetrahydrofolate ligase DSM104440_00756 PF00069 Protein kinase domain DSM104440_00756 PF03793 PASTA domain DSM104440_00758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00758 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104440_00758 PF01627 Hpt domain DSM104440_00758 PF00072 Response regulator receiver domain DSM104440_00758 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00758 PF00672 HAMP domain DSM104440_00759 PF16736 Single Cache-like DSM104440_00759 PF00989 PAS fold DSM104440_00759 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00761 PF00072 Response regulator receiver domain DSM104440_00762 PF02913 FAD linked oxidases, C-terminal domain DSM104440_00762 PF01565 FAD binding domain DSM104440_00763 PF01565 FAD binding domain DSM104440_00763 PF02913 FAD linked oxidases, C-terminal domain DSM104440_00764 PF01565 FAD binding domain DSM104440_00765 PF02754 Cysteine-rich domain DSM104440_00765 PF13183 4Fe-4S dicluster domain DSM104440_00767 PF01197 Ribosomal protein L31 DSM104440_00769 PF07497 Rho termination factor, RNA-binding domain DSM104440_00769 PF07498 Rho termination factor, N-terminal domain DSM104440_00769 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104440_00770 PF00085 Thioredoxin DSM104440_00771 PF11953 Domain of unknown function (DUF3470) DSM104440_00771 PF00037 4Fe-4S binding domain DSM104440_00773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_00773 PF01590 GAF domain DSM104440_00773 PF08446 PAS fold DSM104440_00773 PF00360 Phytochrome region DSM104440_00773 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_00774 PF00072 Response regulator receiver domain DSM104440_00775 PF00563 EAL domain DSM104440_00775 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00775 PF03707 Bacterial signalling protein N terminal repeat DSM104440_00776 PF02322 Cytochrome bd terminal oxidase subunit II DSM104440_00777 PF01654 Cytochrome bd terminal oxidase subunit I DSM104440_00779 PF13361 UvrD-like helicase C-terminal domain DSM104440_00779 PF12705 PD-(D/E)XK nuclease superfamily DSM104440_00779 PF00580 UvrD/REP helicase N-terminal domain DSM104440_00782 PF00005 ABC transporter DSM104440_00784 PF00561 alpha/beta hydrolase fold DSM104440_00785 PF04337 Protein of unknown function, DUF480 DSM104440_00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00790 PF03466 LysR substrate binding domain DSM104440_00791 PF01636 Phosphotransferase enzyme family DSM104440_00797 PF07729 FCD domain DSM104440_00797 PF00392 Bacterial regulatory proteins, gntR family DSM104440_00798 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_00802 PF00692 dUTPase DSM104440_00803 PF02441 Flavoprotein DSM104440_00803 PF04127 DNA / pantothenate metabolism flavoprotein DSM104440_00804 PF04002 RadC-like JAB domain DSM104440_00805 PF00830 Ribosomal L28 family DSM104440_00806 PF00471 Ribosomal protein L33 DSM104440_00807 PF12849 PBP superfamily domain DSM104440_00808 PF02203 Tar ligand binding domain homologue DSM104440_00808 PF00672 HAMP domain DSM104440_00808 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104440_00811 PF00924 Mechanosensitive ion channel DSM104440_00811 PF12795 Mechanosensitive ion channel porin domain DSM104440_00811 PF12794 Mechanosensitive ion channel inner membrane domain 1 DSM104440_00812 PF01189 16S rRNA methyltransferase RsmB/F DSM104440_00812 PF01029 NusB family DSM104440_00814 PF00551 Formyl transferase DSM104440_00815 PF00586 AIR synthase related protein, N-terminal domain DSM104440_00815 PF02769 AIR synthase related protein, C-terminal domain DSM104440_00816 PF02445 Quinolinate synthetase A protein DSM104440_00817 PF00308 Bacterial dnaA protein DSM104440_00817 PF08299 Bacterial dnaA protein helix-turn-helix DSM104440_00819 PF01743 Poly A polymerase head domain DSM104440_00819 PF12627 Probable RNA and SrmB- binding site of polymerase A DSM104440_00819 PF12626 Polymerase A arginine-rich C-terminus DSM104440_00820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DSM104440_00821 PF01712 Deoxynucleoside kinase DSM104440_00822 PF02548 Ketopantoate hydroxymethyltransferase DSM104440_00823 PF02569 Pantoate-beta-alanine ligase DSM104440_00824 PF02261 Aspartate decarboxylase DSM104440_00825 PF01738 Dienelactone hydrolase family DSM104440_00826 PF00701 Dihydrodipicolinate synthetase family DSM104440_00829 PF04397 LytTr DNA-binding domain DSM104440_00829 PF00072 Response regulator receiver domain DSM104440_00832 PF07883 Cupin domain DSM104440_00833 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain DSM104440_00835 PF07687 Peptidase dimerisation domain DSM104440_00835 PF01546 Peptidase family M20/M25/M40 DSM104440_00836 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104440_00837 PF01568 Molydopterin dinucleotide binding domain DSM104440_00837 PF00384 Molybdopterin oxidoreductase DSM104440_00837 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104440_00837 PF04324 BFD-like [2Fe-2S] binding domain DSM104440_00838 PF00355 Rieske [2Fe-2S] domain DSM104440_00839 PF18267 Rubredoxin NAD+ reductase C-terminal domain DSM104440_00839 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_00839 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DSM104440_00839 PF04324 BFD-like [2Fe-2S] binding domain DSM104440_00839 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DSM104440_00840 PF00005 ABC transporter DSM104440_00841 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00843 PF08376 Nitrate and nitrite sensing DSM104440_00843 PF03861 ANTAR domain DSM104440_00845 PF00664 ABC transporter transmembrane region DSM104440_00845 PF00005 ABC transporter DSM104440_00845 PF03412 Peptidase C39 family DSM104440_00846 PF00005 ABC transporter DSM104440_00846 PF03412 Peptidase C39 family DSM104440_00846 PF00664 ABC transporter transmembrane region DSM104440_00852 PF02685 Glucokinase DSM104440_00852 PF01418 Helix-turn-helix domain, rpiR family DSM104440_00852 PF01380 SIS domain DSM104440_00853 PF07715 TonB-dependent Receptor Plug Domain DSM104440_00853 PF00593 TonB dependent receptor DSM104440_00854 PF00356 Bacterial regulatory proteins, lacI family DSM104440_00856 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00857 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_00858 PF00232 Glycosyl hydrolase family 1 DSM104440_00859 PF02547 Queuosine biosynthesis protein DSM104440_00862 PF03466 LysR substrate binding domain DSM104440_00862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00864 PF02358 Trehalose-phosphatase DSM104440_00865 PF00982 Glycosyltransferase family 20 DSM104440_00867 PF00719 Inorganic pyrophosphatase DSM104440_00870 PF02687 FtsX-like permease family DSM104440_00870 PF12704 MacB-like periplasmic core domain DSM104440_00870 PF00005 ABC transporter DSM104440_00874 PF13443 Cro/C1-type HTH DNA-binding domain DSM104440_00877 PF00892 EamA-like transporter family DSM104440_00882 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DSM104440_00882 PF02769 AIR synthase related protein, C-terminal domain DSM104440_00882 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DSM104440_00891 PF01722 BolA-like protein DSM104440_00892 PF04279 Intracellular septation protein A DSM104440_00894 PF02811 PHP domain DSM104440_00895 PF01300 Telomere recombination DSM104440_00896 PF02163 Peptidase family M50 DSM104440_00897 PF00579 tRNA synthetases class I (W and Y) DSM104440_00899 PF02616 Segregation and condensation protein ScpA DSM104440_00900 PF04079 Segregation and condensation complex subunit ScpB DSM104440_00901 PF01479 S4 domain DSM104440_00901 PF00849 RNA pseudouridylate synthase DSM104440_00903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_00903 PF03466 LysR substrate binding domain DSM104440_00906 PF00857 Isochorismatase family DSM104440_00908 PF03795 YCII-related domain DSM104440_00910 PF01243 Pyridoxamine 5'-phosphate oxidase DSM104440_00910 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DSM104440_00911 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_00912 PF00596 Class II Aldolase and Adducin N-terminal domain DSM104440_00915 PF05175 Methyltransferase small domain DSM104440_00916 PF07687 Peptidase dimerisation domain DSM104440_00916 PF01546 Peptidase family M20/M25/M40 DSM104440_00919 PF00437 Type II/IV secretion system protein DSM104440_00920 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_00920 PF14602 Hexapeptide repeat of succinyl-transferase DSM104440_00920 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DSM104440_00921 PF00155 Aminotransferase class I and II DSM104440_00922 PF08241 Methyltransferase domain DSM104440_00923 PF00535 Glycosyl transferase family 2 DSM104440_00925 PF14489 QueF-like protein DSM104440_00926 PF08241 Methyltransferase domain DSM104440_00927 PF02463 RecF/RecN/SMC N terminal domain DSM104440_00927 PF06470 SMC proteins Flexible Hinge Domain DSM104440_00929 PF03120 NAD-dependent DNA ligase OB-fold domain DSM104440_00929 PF00533 BRCA1 C Terminus (BRCT) domain DSM104440_00929 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DSM104440_00929 PF12826 Helix-hairpin-helix motif DSM104440_00929 PF01653 NAD-dependent DNA ligase adenylation domain DSM104440_00930 PF00483 Nucleotidyl transferase DSM104440_00931 PF00156 Phosphoribosyl transferase domain DSM104440_00932 PF01048 Phosphorylase superfamily DSM104440_00933 PF01327 Polypeptide deformylase DSM104440_00937 PF08335 GlnD PII-uridylyltransferase DSM104440_00937 PF01909 Nucleotidyltransferase domain DSM104440_00937 PF01966 HD domain DSM104440_00938 PF00557 Metallopeptidase family M24 DSM104440_00939 PF00318 Ribosomal protein S2 DSM104440_00940 PF00889 Elongation factor TS DSM104440_00941 PF00696 Amino acid kinase family DSM104440_00942 PF01765 Ribosome recycling factor DSM104440_00943 PF01255 Putative undecaprenyl diphosphate synthase DSM104440_00945 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DSM104440_00945 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DSM104440_00945 PF13288 DXP reductoisomerase C-terminal domain DSM104440_00946 PF17820 PDZ domain DSM104440_00946 PF02163 Peptidase family M50 DSM104440_00946 PF13180 PDZ domain DSM104440_00947 PF07244 Surface antigen variable number repeat DSM104440_00947 PF01103 Surface antigen DSM104440_00949 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DSM104440_00949 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_00950 PF07977 FabA-like domain DSM104440_00951 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DSM104440_00951 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_00952 PF02684 Lipid-A-disaccharide synthetase DSM104440_00953 PF01351 Ribonuclease HII DSM104440_00954 PF08032 RNA 2'-O ribose methyltransferase substrate binding DSM104440_00954 PF00588 SpoU rRNA Methylase family DSM104440_00957 PF01734 Patatin-like phospholipase DSM104440_00958 PF03797 Autotransporter beta-domain DSM104440_00958 PF00657 GDSL-like Lipase/Acylhydrolase DSM104440_00959 PF03618 Kinase/pyrophosphorylase DSM104440_00960 PF00391 PEP-utilising enzyme, mobile domain DSM104440_00960 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104440_00960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DSM104440_00961 PF13673 Acetyltransferase (GNAT) domain DSM104440_00964 PF01470 Pyroglutamyl peptidase DSM104440_00965 PF00501 AMP-binding enzyme DSM104440_00965 PF13193 AMP-binding enzyme C-terminal domain DSM104440_00966 PF16916 Dimerisation domain of Zinc Transporter DSM104440_00966 PF01545 Cation efflux family DSM104440_00967 PF00403 Heavy-metal-associated domain DSM104440_00968 PF00753 Metallo-beta-lactamase superfamily DSM104440_00968 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DSM104440_00968 PF10996 Beta-Casp domain DSM104440_00971 PF03109 ABC1 family DSM104440_00974 PF00850 Histone deacetylase domain DSM104440_00978 PF00873 AcrB/AcrD/AcrF family DSM104440_00979 PF00690 Cation transporter/ATPase, N-terminus DSM104440_00979 PF00689 Cation transporting ATPase, C-terminus DSM104440_00982 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_00984 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_00985 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DSM104440_00986 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_00987 PF13085 2Fe-2S iron-sulfur cluster binding domain DSM104440_00987 PF13183 4Fe-4S dicluster domain DSM104440_00988 PF00890 FAD binding domain DSM104440_00988 PF02910 Fumarate reductase flavoprotein C-term DSM104440_00989 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DSM104440_00990 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DSM104440_00991 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DSM104440_00991 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DSM104440_00992 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_00993 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DSM104440_00993 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_00994 PF00390 Malic enzyme, N-terminal domain DSM104440_00994 PF03949 Malic enzyme, NAD binding domain DSM104440_01000 PF00361 Proton-conducting membrane transporter DSM104440_01001 PF00361 Proton-conducting membrane transporter DSM104440_01001 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DSM104440_01002 PF00361 Proton-conducting membrane transporter DSM104440_01002 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DSM104440_01003 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DSM104440_01004 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DSM104440_01005 PF00037 4Fe-4S binding domain DSM104440_01006 PF00146 NADH dehydrogenase DSM104440_01007 PF00384 Molybdopterin oxidoreductase DSM104440_01007 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104440_01007 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DSM104440_01008 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104440_01008 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104440_01008 PF10531 SLBB domain DSM104440_01010 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DSM104440_01011 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DSM104440_01012 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DSM104440_01013 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DSM104440_01015 PF12697 Alpha/beta hydrolase family DSM104440_01016 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104440_01019 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DSM104440_01019 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DSM104440_01020 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DSM104440_01020 PF13746 4Fe-4S dicluster domain DSM104440_01020 PF12801 4Fe-4S binding domain DSM104440_01024 PF13607 Succinyl-CoA ligase like flavodoxin domain DSM104440_01024 PF13380 CoA binding domain DSM104440_01024 PF00583 Acetyltransferase (GNAT) family DSM104440_01028 PF00582 Universal stress protein family DSM104440_01029 PF00582 Universal stress protein family DSM104440_01030 PF00027 Cyclic nucleotide-binding domain DSM104440_01030 PF13545 Crp-like helix-turn-helix domain DSM104440_01031 PF01339 CheB methylesterase DSM104440_01031 PF00072 Response regulator receiver domain DSM104440_01032 PF00196 Bacterial regulatory proteins, luxR family DSM104440_01032 PF00072 Response regulator receiver domain DSM104440_01033 PF17200 Single Cache domain 2 DSM104440_01033 PF07730 Histidine kinase DSM104440_01034 PF06969 HemN C-terminal domain DSM104440_01034 PF04055 Radical SAM superfamily DSM104440_01038 PF00317 Ribonucleotide reductase, all-alpha domain DSM104440_01038 PF03477 ATP cone domain DSM104440_01038 PF02867 Ribonucleotide reductase, barrel domain DSM104440_01041 PF03060 Nitronate monooxygenase DSM104440_01043 PF00027 Cyclic nucleotide-binding domain DSM104440_01043 PF00325 Bacterial regulatory proteins, crp family DSM104440_01045 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104440_01047 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_01047 PF00970 Oxidoreductase FAD-binding domain DSM104440_01047 PF00175 Oxidoreductase NAD-binding domain DSM104440_01049 PF01040 UbiA prenyltransferase family DSM104440_01050 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104440_01054 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DSM104440_01056 PF00034 Cytochrome c DSM104440_01057 PF00027 Cyclic nucleotide-binding domain DSM104440_01057 PF00520 Ion transport protein DSM104440_01058 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01058 PF00593 TonB dependent receptor DSM104440_01060 PF03006 Haemolysin-III related DSM104440_01061 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104440_01061 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104440_01061 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_01062 PF02036 SCP-2 sterol transfer family DSM104440_01063 PF01136 Peptidase family U32 DSM104440_01064 PF01136 Peptidase family U32 DSM104440_01065 PF04304 Protein of unknown function (DUF454) DSM104440_01066 PF02082 Transcriptional regulator DSM104440_01067 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104440_01069 PF01883 Iron-sulfur cluster assembly protein DSM104440_01070 PF03264 NapC/NirT cytochrome c family, N-terminal region DSM104440_01071 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DSM104440_01072 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104440_01072 PF00384 Molybdopterin oxidoreductase DSM104440_01072 PF01568 Molydopterin dinucleotide binding domain DSM104440_01073 PF03927 NapD protein DSM104440_01075 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01078 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104440_01078 PF00437 Type II/IV secretion system protein DSM104440_01079 PF01804 Penicillin amidase DSM104440_01088 PF05958 tRNA (Uracil-5-)-methyltransferase DSM104440_01088 PF01938 TRAM domain DSM104440_01089 PF01027 Inhibitor of apoptosis-promoting Bax1 DSM104440_01094 PF00563 EAL domain DSM104440_01094 PF08448 PAS fold DSM104440_01094 PF08447 PAS fold DSM104440_01094 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01095 PF00696 Amino acid kinase family DSM104440_01095 PF01842 ACT domain DSM104440_01095 PF13840 ACT domain DSM104440_01096 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104440_01096 PF00326 Prolyl oligopeptidase family DSM104440_01100 PF00072 Response regulator receiver domain DSM104440_01101 PF00072 Response regulator receiver domain DSM104440_01101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01101 PF13426 PAS domain DSM104440_01102 PF18029 Glyoxalase-like domain DSM104440_01108 PF00593 TonB dependent receptor DSM104440_01108 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01110 PF01645 Conserved region in glutamate synthase DSM104440_01113 PF03616 Sodium/glutamate symporter DSM104440_01117 PF02080 TrkA-C domain DSM104440_01117 PF06826 Predicted Permease Membrane Region DSM104440_01118 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DSM104440_01118 PF01276 Orn/Lys/Arg decarboxylase, major domain DSM104440_01118 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DSM104440_01119 PF02628 Cytochrome oxidase assembly protein DSM104440_01124 PF02653 Branched-chain amino acid transport system / permease component DSM104440_01126 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104440_01126 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104440_01127 PF00294 pfkB family carbohydrate kinase DSM104440_01128 PF01418 Helix-turn-helix domain, rpiR family DSM104440_01128 PF01380 SIS domain DSM104440_01130 PF00005 ABC transporter DSM104440_01131 PF00005 ABC transporter DSM104440_01132 PF00005 ABC transporter DSM104440_01132 PF12848 ABC transporter DSM104440_01137 PF00672 HAMP domain DSM104440_01137 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_01137 PF02743 Cache domain DSM104440_01140 PF01914 MarC family integral membrane protein DSM104440_01141 PF00171 Aldehyde dehydrogenase family DSM104440_01142 PF07722 Peptidase C26 DSM104440_01143 PF06974 Protein of unknown function (DUF1298) DSM104440_01143 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DSM104440_01145 PF12697 Alpha/beta hydrolase family DSM104440_01146 PF04960 Glutaminase DSM104440_01147 PF10005 zinc-ribbon domain DSM104440_01147 PF15887 Putative zinc-binding metallo-peptidase DSM104440_01148 PF00465 Iron-containing alcohol dehydrogenase DSM104440_01149 PF01979 Amidohydrolase family DSM104440_01150 PF03951 Glutamine synthetase, beta-Grasp domain DSM104440_01150 PF00120 Glutamine synthetase, catalytic domain DSM104440_01152 PF01812 5-formyltetrahydrofolate cyclo-ligase family DSM104440_01153 PF00005 ABC transporter DSM104440_01154 PF00005 ABC transporter DSM104440_01156 PF02653 Branched-chain amino acid transport system / permease component DSM104440_01158 PF01381 Helix-turn-helix DSM104440_01158 PF09856 Predicted transcriptional regulator (DUF2083) DSM104440_01158 PF06114 IrrE N-terminal-like domain DSM104440_01159 PF00072 Response regulator receiver domain DSM104440_01159 PF00486 Transcriptional regulatory protein, C terminal DSM104440_01161 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01161 PF00989 PAS fold DSM104440_01161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01161 PF16736 Single Cache-like DSM104440_01162 PF01966 HD domain DSM104440_01163 PF02690 Na+/Pi-cotransporter DSM104440_01164 PF00171 Aldehyde dehydrogenase family DSM104440_01165 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DSM104440_01166 PF07729 FCD domain DSM104440_01166 PF00392 Bacterial regulatory proteins, gntR family DSM104440_01168 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_01170 PF00465 Iron-containing alcohol dehydrogenase DSM104440_01171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_01171 PF03466 LysR substrate binding domain DSM104440_01173 PF00005 ABC transporter DSM104440_01174 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01175 PF00266 Aminotransferase class-V DSM104440_01176 PF03928 Haem-degrading DSM104440_01178 PF08241 Methyltransferase domain DSM104440_01179 PF00701 Dihydrodipicolinate synthetase family DSM104440_01180 PF06804 NlpB/DapX lipoprotein DSM104440_01181 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104440_01181 PF00753 Metallo-beta-lactamase superfamily DSM104440_01184 PF08007 Cupin superfamily protein DSM104440_01185 PF00578 AhpC/TSA family DSM104440_01186 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104440_01188 PF01624 MutS domain I DSM104440_01188 PF05188 MutS domain II DSM104440_01188 PF00488 MutS domain V DSM104440_01188 PF05190 MutS family domain IV DSM104440_01188 PF05192 MutS domain III DSM104440_01190 PF04972 BON domain DSM104440_01190 PF01476 LysM domain DSM104440_01192 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01193 PF00459 Inositol monophosphatase family DSM104440_01194 PF00588 SpoU rRNA Methylase family DSM104440_01196 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_01196 PF06426 Serine acetyltransferase, N-terminal DSM104440_01197 PF02082 Transcriptional regulator DSM104440_01198 PF00266 Aminotransferase class-V DSM104440_01199 PF01592 NifU-like N terminal domain DSM104440_01200 PF01521 Iron-sulphur cluster biosynthesis DSM104440_01201 PF07743 HSCB C-terminal oligomerisation domain DSM104440_01201 PF00226 DnaJ domain DSM104440_01202 PF00012 Hsp70 protein DSM104440_01203 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_01204 PF04384 Iron-sulphur cluster assembly DSM104440_01205 PF13458 Periplasmic binding protein DSM104440_01207 PF00158 Sigma-54 interaction domain DSM104440_01207 PF00072 Response regulator receiver domain DSM104440_01209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01209 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01212 PF00270 DEAD/DEAH box helicase DSM104440_01212 PF03461 TRCF domain DSM104440_01212 PF00271 Helicase conserved C-terminal domain DSM104440_01212 PF17757 UvrB interaction domain DSM104440_01212 PF02559 CarD-like/TRCF domain DSM104440_01213 PF05681 Fumarate hydratase (Fumerase) DSM104440_01213 PF05683 Fumarase C-terminus DSM104440_01214 PF03350 Uncharacterized protein family, UPF0114 DSM104440_01216 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01216 PF00501 AMP-binding enzyme DSM104440_01218 PF16177 Acetyl-coenzyme A synthetase N-terminus DSM104440_01218 PF00501 AMP-binding enzyme DSM104440_01218 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01220 PF00672 HAMP domain DSM104440_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01220 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01220 PF00989 PAS fold DSM104440_01220 PF18698 Histidine kinase sensor domain DSM104440_01221 PF00196 Bacterial regulatory proteins, luxR family DSM104440_01221 PF00072 Response regulator receiver domain DSM104440_01225 PF00474 Sodium:solute symporter family DSM104440_01228 PF00486 Transcriptional regulatory protein, C terminal DSM104440_01228 PF00072 Response regulator receiver domain DSM104440_01234 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104440_01234 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104440_01234 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_01235 PF10369 Small subunit of acetolactate synthase DSM104440_01236 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DSM104440_01236 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DSM104440_01237 PF02666 Phosphatidylserine decarboxylase DSM104440_01238 PF01066 CDP-alcohol phosphatidyltransferase DSM104440_01239 PF08502 LeuA allosteric (dimerisation) domain DSM104440_01239 PF00682 HMGL-like DSM104440_01241 PF00248 Aldo/keto reductase family DSM104440_01243 PF00206 Lyase DSM104440_01243 PF08328 Adenylosuccinate lyase C-terminal DSM104440_01244 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_01244 PF13417 Glutathione S-transferase, N-terminal domain DSM104440_01247 PF00849 RNA pseudouridylate synthase DSM104440_01248 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104440_01249 PF00313 'Cold-shock' DNA-binding domain DSM104440_01250 PF02617 ATP-dependent Clp protease adaptor protein ClpS DSM104440_01251 PF17871 AAA lid domain DSM104440_01251 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104440_01251 PF07724 AAA domain (Cdc48 subfamily) DSM104440_01251 PF02861 Clp amino terminal domain, pathogenicity island component DSM104440_01251 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_01252 PF00034 Cytochrome c DSM104440_01253 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01253 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding DSM104440_01253 PF10518 TAT (twin-arginine translocation) pathway signal sequence DSM104440_01254 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DSM104440_01254 PF02142 MGS-like domain DSM104440_01254 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104440_01255 PF13302 Acetyltransferase (GNAT) domain DSM104440_01256 PF00440 Bacterial regulatory proteins, tetR family DSM104440_01257 PF05872 Bacterial protein of unknown function (DUF853) DSM104440_01258 PF01709 Transcriptional regulator DSM104440_01260 PF02075 Crossover junction endodeoxyribonuclease RuvC DSM104440_01261 PF01330 RuvA N terminal domain DSM104440_01261 PF07499 RuvA, C-terminal domain DSM104440_01262 PF17864 RuvB AAA lid domain DSM104440_01262 PF05496 Holliday junction DNA helicase RuvB P-loop domain DSM104440_01262 PF05491 RuvB C-terminal winged helix domain DSM104440_01263 PF03061 Thioesterase superfamily DSM104440_01264 PF01618 MotA/TolQ/ExbB proton channel family DSM104440_01265 PF02472 Biopolymer transport protein ExbD/TolR DSM104440_01267 PF07676 WD40-like Beta Propeller Repeat DSM104440_01267 PF04052 TolB amino-terminal domain DSM104440_01268 PF00691 OmpA family DSM104440_01270 PF06508 Queuosine biosynthesis protein QueC DSM104440_01276 PF00186 Dihydrofolate reductase DSM104440_01277 PF00303 Thymidylate synthase DSM104440_01280 PF00593 TonB dependent receptor DSM104440_01280 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01281 PF17384 RimP C-terminal SH3 domain DSM104440_01281 PF02576 RimP N-terminal domain DSM104440_01282 PF13184 NusA-like KH domain DSM104440_01282 PF08529 NusA N-terminal domain DSM104440_01283 PF04760 Translation initiation factor IF-2, N-terminal region DSM104440_01283 PF00009 Elongation factor Tu GTP binding domain DSM104440_01283 PF08364 Bacterial translation initiation factor IF-2 associated region DSM104440_01283 PF11987 Translation-initiation factor 2 DSM104440_01284 PF02033 Ribosome-binding factor A DSM104440_01285 PF01509 TruB family pseudouridylate synthase (N terminal domain) DSM104440_01285 PF16198 tRNA pseudouridylate synthase B C-terminal domain DSM104440_01285 PF09157 Pseudouridine synthase II TruB, C-terminal DSM104440_01286 PF00312 Ribosomal protein S15 DSM104440_01287 PF00013 KH domain DSM104440_01287 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DSM104440_01287 PF03725 3' exoribonuclease family, domain 2 DSM104440_01287 PF01138 3' exoribonuclease family, domain 1 DSM104440_01287 PF00575 S1 RNA binding domain DSM104440_01291 PF01668 SmpB protein DSM104440_01293 PF03658 RnfH family Ubiquitin DSM104440_01298 PF00571 CBS domain DSM104440_01298 PF00478 IMP dehydrogenase / GMP reductase domain DSM104440_01299 PF00117 Glutamine amidotransferase class-I DSM104440_01299 PF00958 GMP synthase C terminal domain DSM104440_01299 PF02540 NAD synthase DSM104440_01300 PF16153 Domain of unknown function (DUF4861) DSM104440_01301 PF04909 Amidohydrolase DSM104440_01302 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01303 PF03960 ArsC family DSM104440_01304 PF00563 EAL domain DSM104440_01304 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01304 PF01590 GAF domain DSM104440_01304 PF00360 Phytochrome region DSM104440_01305 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01305 PF01627 Hpt domain DSM104440_01305 PF00989 PAS fold DSM104440_01305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01305 PF00072 Response regulator receiver domain DSM104440_01305 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104440_01308 PF00072 Response regulator receiver domain DSM104440_01309 PF14437 MafB19-like deaminase DSM104440_01310 PF14579 Helix-hairpin-helix motif DSM104440_01310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DSM104440_01310 PF02811 PHP domain DSM104440_01310 PF07733 Bacterial DNA polymerase III alpha NTPase domain DSM104440_01310 PF01336 OB-fold nucleic acid binding domain DSM104440_01311 PF00708 Acylphosphatase DSM104440_01312 PF03462 PCRF domain DSM104440_01312 PF00472 RF-1 domain DSM104440_01314 PF09334 tRNA synthetases class I (M) DSM104440_01314 PF01588 Putative tRNA binding domain DSM104440_01315 PF10609 NUBPL iron-transfer P-loop NTPase DSM104440_01316 PF00692 dUTPase DSM104440_01317 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DSM104440_01317 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DSM104440_01321 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_01323 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01324 PF03186 CobD/Cbib protein DSM104440_01324 PF17113 Regulatory signalling modulator protein AmpE DSM104440_01325 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01327 PF01970 Tripartite tricarboxylate transporter TctA family DSM104440_01328 PF00246 Zinc carboxypeptidase DSM104440_01329 PF01875 Memo-like protein DSM104440_01330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DSM104440_01330 PF01871 AMMECR1 DSM104440_01332 PF03193 RsgA GTPase DSM104440_01333 PF01329 Pterin 4 alpha carbinolamine dehydratase DSM104440_01334 PF16491 CAAX prenyl protease N-terminal, five membrane helices DSM104440_01334 PF01435 Peptidase family M48 DSM104440_01335 PF00929 Exonuclease DSM104440_01337 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DSM104440_01337 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DSM104440_01341 PF13416 Bacterial extracellular solute-binding protein DSM104440_01342 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01343 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01344 PF17912 MalK OB fold domain DSM104440_01344 PF00005 ABC transporter DSM104440_01346 PF03055 Retinal pigment epithelial membrane protein DSM104440_01348 PF02464 Competence-damaged protein DSM104440_01349 PF00717 Peptidase S24-like DSM104440_01349 PF01726 LexA DNA binding domain DSM104440_01350 PF00154 recA bacterial DNA recombination protein DSM104440_01351 PF02631 RecX family DSM104440_01353 PF00857 Isochorismatase family DSM104440_01357 PF02594 Uncharacterised ACR, YggU family COG1872 DSM104440_01359 PF02272 DHHA1 domain DSM104440_01359 PF01411 tRNA synthetases class II (A) DSM104440_01359 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DSM104440_01360 PF09297 NADH pyrophosphatase zinc ribbon domain DSM104440_01360 PF00293 NUDIX domain DSM104440_01360 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DSM104440_01364 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104440_01364 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DSM104440_01365 PF00364 Biotin-requiring enzyme DSM104440_01365 PF02817 e3 binding domain DSM104440_01366 PF17831 Pyruvate dehydrogenase E1 component middle domain DSM104440_01366 PF00456 Transketolase, thiamine diphosphate binding domain DSM104440_01369 PF12706 Beta-lactamase superfamily domain DSM104440_01370 PF00437 Type II/IV secretion system protein DSM104440_01370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104440_01371 PF01966 HD domain DSM104440_01372 PF17284 Spermidine synthase tetramerisation domain DSM104440_01373 PF17284 Spermidine synthase tetramerisation domain DSM104440_01377 PF12704 MacB-like periplasmic core domain DSM104440_01377 PF02687 FtsX-like permease family DSM104440_01377 PF00005 ABC transporter DSM104440_01378 PF12704 MacB-like periplasmic core domain DSM104440_01378 PF02687 FtsX-like permease family DSM104440_01378 PF00005 ABC transporter DSM104440_01379 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_01382 PF01435 Peptidase family M48 DSM104440_01383 PF01967 MoaC family DSM104440_01385 PF09828 Chromate resistance exported protein DSM104440_01386 PF01206 Sulfurtransferase TusA DSM104440_01389 PF10458 Valyl tRNA synthetase tRNA binding arm DSM104440_01389 PF00133 tRNA synthetases class I (I, L, M and V) DSM104440_01389 PF08264 Anticodon-binding domain of tRNA DSM104440_01392 PF00883 Cytosol aminopeptidase family, catalytic domain DSM104440_01392 PF02789 Cytosol aminopeptidase family, N-terminal domain DSM104440_01398 PF08019 Phosphoethanolamine transferase EptA/EptB DSM104440_01398 PF00884 Sulfatase DSM104440_01400 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01401 PF10017 Histidine-specific methyltransferase, SAM-dependent DSM104440_01403 PF12867 DinB superfamily DSM104440_01403 PF03781 Sulfatase-modifying factor enzyme 1 DSM104440_01404 PF00586 AIR synthase related protein, N-terminal domain DSM104440_01404 PF02769 AIR synthase related protein, C-terminal domain DSM104440_01406 PF03781 Sulfatase-modifying factor enzyme 1 DSM104440_01407 PF12170 DNA polymerase III tau subunit V interacting with alpha DSM104440_01407 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DSM104440_01407 PF12169 DNA polymerase III subunits gamma and tau domain III DSM104440_01408 PF02575 YbaB/EbfC DNA-binding family DSM104440_01409 PF02132 RecR protein DSM104440_01409 PF13662 Toprim domain DSM104440_01417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01417 PF07689 KaiB domain DSM104440_01417 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01421 PF07290 Protein of unknown function (DUF1449) DSM104440_01422 PF15975 Flotillin DSM104440_01422 PF01145 SPFH domain / Band 7 family DSM104440_01424 PF01494 FAD binding domain DSM104440_01426 PF03466 LysR substrate binding domain DSM104440_01426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_01427 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01428 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_01430 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_01431 PF08450 SMP-30/Gluconolactonase/LRE-like region DSM104440_01432 PF01370 NAD dependent epimerase/dehydratase family DSM104440_01433 PF00356 Bacterial regulatory proteins, lacI family DSM104440_01435 PF00657 GDSL-like Lipase/Acylhydrolase DSM104440_01437 PF00388 Phosphatidylinositol-specific phospholipase C, X domain DSM104440_01439 PF01427 D-ala-D-ala dipeptidase DSM104440_01440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DSM104440_01440 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DSM104440_01441 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DSM104440_01442 PF00593 TonB dependent receptor DSM104440_01442 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01443 PF02016 LD-carboxypeptidase N-terminal domain DSM104440_01443 PF17676 LD-carboxypeptidase C-terminal domain DSM104440_01444 PF00144 Beta-lactamase DSM104440_01445 PF01510 N-acetylmuramoyl-L-alanine amidase DSM104440_01446 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_01447 PF07670 Nucleoside recognition DSM104440_01451 PF13191 AAA ATPase domain DSM104440_01451 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_01453 PF03109 ABC1 family DSM104440_01454 PF02016 LD-carboxypeptidase N-terminal domain DSM104440_01454 PF17676 LD-carboxypeptidase C-terminal domain DSM104440_01455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_01456 PF03949 Malic enzyme, NAD binding domain DSM104440_01456 PF01515 Phosphate acetyl/butaryl transferase DSM104440_01456 PF00390 Malic enzyme, N-terminal domain DSM104440_01467 PF01264 Chorismate synthase DSM104440_01468 PF00176 SNF2 family N-terminal domain DSM104440_01468 PF00271 Helicase conserved C-terminal domain DSM104440_01470 PF01555 DNA methylase DSM104440_01478 PF00330 Aconitase family (aconitate hydratase) DSM104440_01480 PF00313 'Cold-shock' DNA-binding domain DSM104440_01482 PF00694 Aconitase C-terminal domain DSM104440_01483 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104440_01484 PF01118 Semialdehyde dehydrogenase, NAD binding domain DSM104440_01484 PF02774 Semialdehyde dehydrogenase, dimerisation domain DSM104440_01486 PF01416 tRNA pseudouridine synthase DSM104440_01487 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DSM104440_01488 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_01489 PF00290 Tryptophan synthase alpha chain DSM104440_01490 PF17848 Acetyl-coA carboxylase zinc finger domain DSM104440_01490 PF01039 Carboxyl transferase domain DSM104440_01491 PF08245 Mur ligase middle domain DSM104440_01491 PF02875 Mur ligase family, glutamate ligase domain DSM104440_01493 PF00156 Phosphoribosyl transferase domain DSM104440_01494 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104440_01497 PF01734 Patatin-like phospholipase DSM104440_01498 PF00149 Calcineurin-like phosphoesterase DSM104440_01499 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DSM104440_01502 PF09190 DALR domain DSM104440_01502 PF01406 tRNA synthetases class I (C) catalytic domain DSM104440_01504 PF13458 Periplasmic binding protein DSM104440_01505 PF00684 DnaJ central domain DSM104440_01505 PF01556 DnaJ C terminal domain DSM104440_01505 PF00226 DnaJ domain DSM104440_01506 PF00012 Hsp70 protein DSM104440_01507 PF01025 GrpE DSM104440_01508 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DSM104440_01509 PF00762 Ferrochelatase DSM104440_01510 PF01628 HrcA protein C terminal domain DSM104440_01511 PF01513 ATP-NAD kinase DSM104440_01512 PF02463 RecF/RecN/SMC N terminal domain DSM104440_01516 PF02230 Phospholipase/Carboxylesterase DSM104440_01517 PF00994 Probable molybdopterin binding domain DSM104440_01518 PF04751 Protein of unknown function (DUF615) DSM104440_01519 PF01523 Putative modulator of DNA gyrase DSM104440_01520 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_01522 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DSM104440_01524 PF00578 AhpC/TSA family DSM104440_01528 PF00464 Serine hydroxymethyltransferase DSM104440_01529 PF03477 ATP cone domain DSM104440_01530 PF01872 RibD C-terminal domain DSM104440_01530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DSM104440_01531 PF00677 Lumazine binding domain DSM104440_01532 PF00925 GTP cyclohydrolase II DSM104440_01532 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DSM104440_01533 PF00885 6,7-dimethyl-8-ribityllumazine synthase DSM104440_01534 PF01029 NusB family DSM104440_01535 PF00586 AIR synthase related protein, N-terminal domain DSM104440_01535 PF02769 AIR synthase related protein, C-terminal domain DSM104440_01536 PF04608 Phosphatidylglycerophosphatase A DSM104440_01537 PF03009 Glycerophosphoryl diester phosphodiesterase family DSM104440_01539 PF13614 AAA domain DSM104440_01541 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104440_01541 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01542 PF08534 Redoxin DSM104440_01542 PF00462 Glutaredoxin DSM104440_01543 PF03466 LysR substrate binding domain DSM104440_01543 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_01544 PF00440 Bacterial regulatory proteins, tetR family DSM104440_01550 PF02915 Rubrerythrin DSM104440_01552 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01554 PF01979 Amidohydrolase family DSM104440_01559 PF01175 Urocanase Rossmann-like domain DSM104440_01559 PF17392 Urocanase C-terminal domain DSM104440_01559 PF17391 Urocanase N-terminal domain DSM104440_01560 PF13361 UvrD-like helicase C-terminal domain DSM104440_01560 PF00580 UvrD/REP helicase N-terminal domain DSM104440_01566 PF07995 Glucose / Sorbosone dehydrogenase DSM104440_01570 PF01906 Putative heavy-metal-binding DSM104440_01578 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_01578 PF00107 Zinc-binding dehydrogenase DSM104440_01579 PF00756 Putative esterase DSM104440_01580 PF13462 Thioredoxin DSM104440_01580 PF06965 Na+/H+ antiporter 1 DSM104440_01581 PF00023 Ankyrin repeat DSM104440_01582 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01583 PF00107 Zinc-binding dehydrogenase DSM104440_01583 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_01585 PF00221 Aromatic amino acid lyase DSM104440_01589 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01590 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_01590 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104440_01590 PF07724 AAA domain (Cdc48 subfamily) DSM104440_01591 PF00941 FAD binding domain in molybdopterin dehydrogenase DSM104440_01591 PF03450 CO dehydrogenase flavoprotein C-terminal domain DSM104440_01592 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DSM104440_01592 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104440_01593 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_01593 PF01799 [2Fe-2S] binding domain DSM104440_01595 PF00920 Dehydratase family DSM104440_01596 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_01596 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_01597 PF17912 MalK OB fold domain DSM104440_01597 PF00005 ABC transporter DSM104440_01597 PF03459 TOBE domain DSM104440_01599 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01601 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_01603 PF13580 SIS domain DSM104440_01604 PF13091 PLD-like domain DSM104440_01606 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_01606 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_01607 PF02615 Malate/L-lactate dehydrogenase DSM104440_01608 PF01557 Fumarylacetoacetate (FAA) hydrolase family DSM104440_01610 PF00392 Bacterial regulatory proteins, gntR family DSM104440_01610 PF07729 FCD domain DSM104440_01612 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_01613 PF08666 SAF domain DSM104440_01613 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DSM104440_01614 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_01615 PF00582 Universal stress protein family DSM104440_01617 PF01272 Transcription elongation factor, GreA/GreB, C-term DSM104440_01617 PF14760 Rnk N-terminus DSM104440_01618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_01618 PF03466 LysR substrate binding domain DSM104440_01619 PF03334 Na+/H+ antiporter subunit DSM104440_01620 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DSM104440_01621 PF01899 Na+/H+ ion antiporter subunit DSM104440_01622 PF00361 Proton-conducting membrane transporter DSM104440_01623 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DSM104440_01624 PF00361 Proton-conducting membrane transporter DSM104440_01624 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DSM104440_01624 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DSM104440_01624 PF13244 Domain of unknown function (DUF4040) DSM104440_01625 PF03471 Transporter associated domain DSM104440_01625 PF03741 Integral membrane protein TerC family DSM104440_01631 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104440_01635 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01635 PF00593 TonB dependent receptor DSM104440_01639 PF00873 AcrB/AcrD/AcrF family DSM104440_01640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_01640 PF00529 HlyD membrane-fusion protein of T1SS DSM104440_01645 PF13953 PapC C-terminal domain DSM104440_01645 PF00577 Outer membrane usher protein DSM104440_01645 PF13954 PapC N-terminal domain DSM104440_01651 PF01979 Amidohydrolase family DSM104440_01653 PF00230 Major intrinsic protein DSM104440_01659 PF16868 NMT1-like family DSM104440_01660 PF00202 Aminotransferase class-III DSM104440_01662 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104440_01678 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01679 PF00892 EamA-like transporter family DSM104440_01680 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DSM104440_01680 PF00056 lactate/malate dehydrogenase, NAD binding domain DSM104440_01683 PF08281 Sigma-70, region 4 DSM104440_01683 PF04542 Sigma-70 region 2 DSM104440_01686 PF01865 Protein of unknown function DUF47 DSM104440_01687 PF01384 Phosphate transporter family DSM104440_01691 PF13847 Methyltransferase domain DSM104440_01697 PF00330 Aconitase family (aconitate hydratase) DSM104440_01697 PF00694 Aconitase C-terminal domain DSM104440_01699 PF03972 MmgE/PrpD family DSM104440_01701 PF00285 Citrate synthase, C-terminal domain DSM104440_01704 PF01575 MaoC like domain DSM104440_01705 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104440_01706 PF00392 Bacterial regulatory proteins, gntR family DSM104440_01706 PF07702 UTRA domain DSM104440_01708 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DSM104440_01709 PF02910 Fumarate reductase flavoprotein C-term DSM104440_01709 PF00890 FAD binding domain DSM104440_01710 PF13085 2Fe-2S iron-sulfur cluster binding domain DSM104440_01711 PF03937 Flavinator of succinate dehydrogenase DSM104440_01712 PF00285 Citrate synthase, C-terminal domain DSM104440_01713 PF02779 Transketolase, pyrimidine binding domain DSM104440_01713 PF16870 2-oxoglutarate dehydrogenase C-terminal DSM104440_01713 PF16078 2-oxoglutarate dehydrogenase N-terminus DSM104440_01713 PF00676 Dehydrogenase E1 component DSM104440_01714 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DSM104440_01714 PF02817 e3 binding domain DSM104440_01714 PF00364 Biotin-requiring enzyme DSM104440_01717 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104440_01718 PF03969 AFG1-like ATPase DSM104440_01719 PF00501 AMP-binding enzyme DSM104440_01719 PF16177 Acetyl-coenzyme A synthetase N-terminus DSM104440_01719 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01721 PF04715 Anthranilate synthase component I, N terminal region DSM104440_01721 PF00425 chorismate binding enzyme DSM104440_01722 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DSM104440_01722 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DSM104440_01723 PF00501 AMP-binding enzyme DSM104440_01723 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01727 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_01730 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104440_01730 PF00005 ABC transporter DSM104440_01731 PF00005 ABC transporter DSM104440_01735 PF00501 AMP-binding enzyme DSM104440_01735 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01736 PF16326 ABC transporter C-terminal domain DSM104440_01736 PF00005 ABC transporter DSM104440_01736 PF12848 ABC transporter DSM104440_01738 PF01012 Electron transfer flavoprotein domain DSM104440_01739 PF00766 Electron transfer flavoprotein FAD-binding domain DSM104440_01739 PF01012 Electron transfer flavoprotein domain DSM104440_01740 PF12806 Acetyl-CoA dehydrogenase C-terminal like DSM104440_01740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_01740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_01740 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_01741 PF02659 Putative manganese efflux pump DSM104440_01744 PF00873 AcrB/AcrD/AcrF family DSM104440_01746 PF07995 Glucose / Sorbosone dehydrogenase DSM104440_01748 PF06167 Glucose-regulated metallo-peptidase M90 DSM104440_01750 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01750 PF00072 Response regulator receiver domain DSM104440_01750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104440_01750 PF01627 Hpt domain DSM104440_01750 PF00672 HAMP domain DSM104440_01751 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01752 PF01557 Fumarylacetoacetate (FAA) hydrolase family DSM104440_01753 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_01754 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_01756 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104440_01756 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104440_01758 PF00171 Aldehyde dehydrogenase family DSM104440_01759 PF13493 Domain of unknown function (DUF4118) DSM104440_01759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01759 PF13426 PAS domain DSM104440_01759 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01759 PF00989 PAS fold DSM104440_01759 PF08447 PAS fold DSM104440_01763 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_01765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_01771 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104440_01771 PF18140 Propionyl-coenzyme A carboxylase BT domain DSM104440_01771 PF00364 Biotin-requiring enzyme DSM104440_01771 PF02785 Biotin carboxylase C-terminal domain DSM104440_01771 PF00289 Biotin carboxylase, N-terminal domain DSM104440_01772 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DSM104440_01773 PF13180 PDZ domain DSM104440_01773 PF17820 PDZ domain DSM104440_01775 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_01776 PF01039 Carboxyl transferase domain DSM104440_01778 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_01778 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_01778 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_01781 PF02803 Thiolase, C-terminal domain DSM104440_01781 PF00108 Thiolase, N-terminal domain DSM104440_01784 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_01784 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_01784 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_01785 PF00106 short chain dehydrogenase DSM104440_01787 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104440_01787 PF00753 Metallo-beta-lactamase superfamily DSM104440_01788 PF00501 AMP-binding enzyme DSM104440_01789 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104440_01789 PF00005 ABC transporter DSM104440_01790 PF02653 Branched-chain amino acid transport system / permease component DSM104440_01793 PF00005 ABC transporter DSM104440_01794 PF14535 AMP-binding enzyme C-terminal domain DSM104440_01794 PF00501 AMP-binding enzyme DSM104440_01795 PF00005 ABC transporter DSM104440_01795 PF08402 TOBE domain DSM104440_01796 PF13416 Bacterial extracellular solute-binding protein DSM104440_01800 PF01258 Prokaryotic dksA/traR C4-type zinc finger DSM104440_01804 PF00005 ABC transporter DSM104440_01806 PF13307 Helicase C-terminal domain DSM104440_01806 PF04851 Type III restriction enzyme, res subunit DSM104440_01811 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_01811 PF00672 HAMP domain DSM104440_01811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01812 PF00072 Response regulator receiver domain DSM104440_01812 PF00486 Transcriptional regulatory protein, C terminal DSM104440_01816 PF00814 Glycoprotease family DSM104440_01818 PF03167 Uracil DNA glycosylase superfamily DSM104440_01820 PF04536 TPM domain DSM104440_01822 PF09339 IclR helix-turn-helix domain DSM104440_01822 PF01614 Bacterial transcriptional regulator DSM104440_01823 PF03918 Cytochrome C biogenesis protein DSM104440_01824 PF08534 Redoxin DSM104440_01825 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DSM104440_01825 PF01578 Cytochrome C assembly protein DSM104440_01826 PF03100 CcmE DSM104440_01828 PF01578 Cytochrome C assembly protein DSM104440_01829 PF03379 CcmB protein DSM104440_01830 PF00005 ABC transporter DSM104440_01838 PF13545 Crp-like helix-turn-helix domain DSM104440_01838 PF00027 Cyclic nucleotide-binding domain DSM104440_01839 PF11871 Domain of unknown function (DUF3391) DSM104440_01839 PF01966 HD domain DSM104440_01840 PF00563 EAL domain DSM104440_01840 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_01840 PF03707 Bacterial signalling protein N terminal repeat DSM104440_01841 PF07690 Major Facilitator Superfamily DSM104440_01844 PF02515 CoA-transferase family III DSM104440_01845 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104440_01845 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_01845 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DSM104440_01849 PF00072 Response regulator receiver domain DSM104440_01850 PF01627 Hpt domain DSM104440_01850 PF02895 Signal transducing histidine kinase, homodimeric domain DSM104440_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01850 PF01584 CheW-like domain DSM104440_01850 PF09078 CheY binding DSM104440_01851 PF03705 CheR methyltransferase, all-alpha domain DSM104440_01851 PF01739 CheR methyltransferase, SAM binding domain DSM104440_01852 PF03975 CheD chemotactic sensory transduction DSM104440_01853 PF00072 Response regulator receiver domain DSM104440_01853 PF01339 CheB methylesterase DSM104440_01854 PF01584 CheW-like domain DSM104440_01855 PF03793 PASTA domain DSM104440_01855 PF00069 Protein kinase domain DSM104440_01856 PF00672 HAMP domain DSM104440_01856 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104440_01857 PF01584 CheW-like domain DSM104440_01859 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DSM104440_01859 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DSM104440_01859 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DSM104440_01860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_01862 PF01212 Beta-eliminating lyase DSM104440_01866 PF00034 Cytochrome c DSM104440_01866 PF03150 Di-haem cytochrome c peroxidase DSM104440_01869 PF02562 PhoH-like protein DSM104440_01869 PF13638 PIN domain DSM104440_01870 PF00578 AhpC/TSA family DSM104440_01871 PF01522 Polysaccharide deacetylase DSM104440_01873 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01873 PF00593 TonB dependent receptor DSM104440_01875 PF01152 Bacterial-like globin DSM104440_01876 PF03144 Elongation factor Tu domain 2 DSM104440_01876 PF00009 Elongation factor Tu GTP binding domain DSM104440_01876 PF00679 Elongation factor G C-terminus DSM104440_01881 PF02646 RmuC family DSM104440_01882 PF00107 Zinc-binding dehydrogenase DSM104440_01882 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_01883 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104440_01884 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DSM104440_01885 PF02597 ThiS family DSM104440_01886 PF02391 MoaE protein DSM104440_01890 PF00174 Oxidoreductase molybdopterin binding domain DSM104440_01902 PF00912 Transglycosylase DSM104440_01902 PF00905 Penicillin binding protein transpeptidase domain DSM104440_01905 PF08000 Bacterial PH domain DSM104440_01912 PF00072 Response regulator receiver domain DSM104440_01912 PF01966 HD domain DSM104440_01916 PF00072 Response regulator receiver domain DSM104440_01917 PF00005 ABC transporter DSM104440_01917 PF00664 ABC transporter transmembrane region DSM104440_01917 PF03412 Peptidase C39 family DSM104440_01924 PF01022 Bacterial regulatory protein, arsR family DSM104440_01925 PF00717 Peptidase S24-like DSM104440_01925 PF01726 LexA DNA binding domain DSM104440_01929 PF07733 Bacterial DNA polymerase III alpha NTPase domain DSM104440_01929 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DSM104440_01929 PF01336 OB-fold nucleic acid binding domain DSM104440_01929 PF14579 Helix-hairpin-helix motif DSM104440_01929 PF02811 PHP domain DSM104440_01936 PF00486 Transcriptional regulatory protein, C terminal DSM104440_01936 PF00072 Response regulator receiver domain DSM104440_01937 PF00072 Response regulator receiver domain DSM104440_01937 PF13426 PAS domain DSM104440_01937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_01945 PF13378 Enolase C-terminal domain-like DSM104440_01945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DSM104440_01947 PF06826 Predicted Permease Membrane Region DSM104440_01947 PF02080 TrkA-C domain DSM104440_01948 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DSM104440_01948 PF08666 SAF domain DSM104440_01950 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01952 PF00199 Catalase DSM104440_01952 PF18011 C-terminal domain found in long catalases DSM104440_01952 PF06628 Catalase-related immune-responsive DSM104440_01954 PF00158 Sigma-54 interaction domain DSM104440_01954 PF00072 Response regulator receiver domain DSM104440_01954 PF02954 Bacterial regulatory protein, Fis family DSM104440_01955 PF00072 Response regulator receiver domain DSM104440_01955 PF02954 Bacterial regulatory protein, Fis family DSM104440_01955 PF00158 Sigma-54 interaction domain DSM104440_01960 PF04972 BON domain DSM104440_01962 PF10415 Fumarase C C-terminus DSM104440_01962 PF00206 Lyase DSM104440_01963 PF01292 Prokaryotic cytochrome b561 DSM104440_01964 PF04264 YceI-like domain DSM104440_01965 PF04264 YceI-like domain DSM104440_01968 PF07676 WD40-like Beta Propeller Repeat DSM104440_01968 PF00326 Prolyl oligopeptidase family DSM104440_01968 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DSM104440_01971 PF04324 BFD-like [2Fe-2S] binding domain DSM104440_01972 PF03544 Gram-negative bacterial TonB protein C-terminal DSM104440_01973 PF03239 Iron permease FTR1 family DSM104440_01974 PF00593 TonB dependent receptor DSM104440_01974 PF07715 TonB-dependent Receptor Plug Domain DSM104440_01975 PF18331 PKHD-type hydroxylase C-terminal domain DSM104440_01975 PF13640 2OG-Fe(II) oxygenase superfamily DSM104440_01977 PF00210 Ferritin-like domain DSM104440_01979 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104440_01979 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_01979 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_01983 PF00501 AMP-binding enzyme DSM104440_01983 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01984 PF01039 Carboxyl transferase domain DSM104440_01985 PF02913 FAD linked oxidases, C-terminal domain DSM104440_01985 PF01565 FAD binding domain DSM104440_01985 PF13183 4Fe-4S dicluster domain DSM104440_01986 PF07729 FCD domain DSM104440_01986 PF00392 Bacterial regulatory proteins, gntR family DSM104440_01987 PF00266 Aminotransferase class-V DSM104440_01988 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_01990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_01991 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_01994 PF00171 Aldehyde dehydrogenase family DSM104440_01997 PF00202 Aminotransferase class-III DSM104440_01998 PF13193 AMP-binding enzyme C-terminal domain DSM104440_01998 PF00501 AMP-binding enzyme DSM104440_02002 PF06974 Protein of unknown function (DUF1298) DSM104440_02002 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DSM104440_02008 PF08360 QacR-like protein, C-terminal region DSM104440_02008 PF00440 Bacterial regulatory proteins, tetR family DSM104440_02010 PF00106 short chain dehydrogenase DSM104440_02011 PF00578 AhpC/TSA family DSM104440_02012 PF01674 Lipase (class 2) DSM104440_02014 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_02014 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_02015 PF01728 FtsJ-like methyltransferase DSM104440_02015 PF18125 RlmM ferredoxin-like domain DSM104440_02016 PF01026 TatD related DNase DSM104440_02019 PF09115 DNA polymerase III, delta subunit, C terminal DSM104440_02020 PF02223 Thymidylate kinase DSM104440_02021 PF02618 YceG-like family DSM104440_02022 PF01063 Amino-transferase class IV DSM104440_02023 PF00109 Beta-ketoacyl synthase, N-terminal domain DSM104440_02023 PF02801 Beta-ketoacyl synthase, C-terminal domain DSM104440_02024 PF00550 Phosphopantetheine attachment site DSM104440_02026 PF00698 Acyl transferase domain DSM104440_02027 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DSM104440_02027 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DSM104440_02028 PF02504 Fatty acid synthesis protein DSM104440_02029 PF01783 Ribosomal L32p protein family DSM104440_02030 PF02620 Large ribosomal RNA subunit accumulation protein YceD DSM104440_02031 PF02545 Maf-like protein DSM104440_02032 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104440_02033 PF00563 EAL domain DSM104440_02033 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02033 PF03707 Bacterial signalling protein N terminal repeat DSM104440_02034 PF06965 Na+/H+ antiporter 1 DSM104440_02034 PF01343 Peptidase family S49 DSM104440_02036 PF13419 Haloacid dehalogenase-like hydrolase DSM104440_02037 PF00849 RNA pseudouridylate synthase DSM104440_02037 PF01479 S4 domain DSM104440_02038 PF00575 S1 RNA binding domain DSM104440_02038 PF10150 Ribonuclease E/G family DSM104440_02038 PF12111 Polyribonucleotide phosphorylase C terminal DSM104440_02039 PF01323 DSBA-like thioredoxin domain DSM104440_02041 PF01451 Low molecular weight phosphotyrosine protein phosphatase DSM104440_02042 PF17757 UvrB interaction domain DSM104440_02042 PF12344 Ultra-violet resistance protein B DSM104440_02042 PF02151 UvrB/uvrC motif DSM104440_02042 PF04851 Type III restriction enzyme, res subunit DSM104440_02042 PF00271 Helicase conserved C-terminal domain DSM104440_02043 PF00155 Aminotransferase class I and II DSM104440_02044 PF10091 Putative glucoamylase DSM104440_02044 PF06165 Glycosyltransferase family 36 DSM104440_02044 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DSM104440_02047 PF00248 Aldo/keto reductase family DSM104440_02048 PF00005 ABC transporter DSM104440_02049 PF02653 Branched-chain amino acid transport system / permease component DSM104440_02050 PF13407 Periplasmic binding protein domain DSM104440_02053 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DSM104440_02053 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DSM104440_02054 PF17912 MalK OB fold domain DSM104440_02054 PF00005 ABC transporter DSM104440_02055 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02056 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02058 PF00356 Bacterial regulatory proteins, lacI family DSM104440_02059 PF00593 TonB dependent receptor DSM104440_02059 PF07715 TonB-dependent Receptor Plug Domain DSM104440_02060 PF07488 Glycosyl hydrolase family 67 middle domain DSM104440_02060 PF03648 Glycosyl hydrolase family 67 N-terminus DSM104440_02060 PF07477 Glycosyl hydrolase family 67 C-terminus DSM104440_02061 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104440_02061 PF14310 Fibronectin type III-like domain DSM104440_02061 PF01915 Glycosyl hydrolase family 3 C-terminal domain DSM104440_02062 PF14310 Fibronectin type III-like domain DSM104440_02062 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104440_02062 PF01915 Glycosyl hydrolase family 3 C-terminal domain DSM104440_02064 PF00672 HAMP domain DSM104440_02064 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104440_02064 PF02203 Tar ligand binding domain homologue DSM104440_02068 PF04616 Glycosyl hydrolases family 43 DSM104440_02068 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DSM104440_02070 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DSM104440_02070 PF13378 Enolase C-terminal domain-like DSM104440_02071 PF04616 Glycosyl hydrolases family 43 DSM104440_02071 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DSM104440_02073 PF00529 HlyD membrane-fusion protein of T1SS DSM104440_02073 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_02074 PF02321 Outer membrane efflux protein DSM104440_02075 PF01699 Sodium/calcium exchanger protein DSM104440_02076 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104440_02079 PF01479 S4 domain DSM104440_02079 PF00849 RNA pseudouridylate synthase DSM104440_02083 PF00144 Beta-lactamase DSM104440_02084 PF00027 Cyclic nucleotide-binding domain DSM104440_02084 PF13545 Crp-like helix-turn-helix domain DSM104440_02086 PF01014 Uricase DSM104440_02086 PF09349 OHCU decarboxylase DSM104440_02088 PF00576 HIUase/Transthyretin family DSM104440_02089 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_02089 PF01799 [2Fe-2S] binding domain DSM104440_02090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DSM104440_02090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104440_02093 PF01979 Amidohydrolase family DSM104440_02094 PF00962 Adenosine/AMP deaminase DSM104440_02095 PF02608 ABC transporter substrate-binding protein PnrA-like DSM104440_02096 PF00356 Bacterial regulatory proteins, lacI family DSM104440_02097 PF00005 ABC transporter DSM104440_02098 PF02653 Branched-chain amino acid transport system / permease component DSM104440_02099 PF02653 Branched-chain amino acid transport system / permease component DSM104440_02100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DSM104440_02101 PF01048 Phosphorylase superfamily DSM104440_02102 PF01791 DeoC/LacD family aldolase DSM104440_02103 PF00171 Aldehyde dehydrogenase family DSM104440_02104 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DSM104440_02104 PF00591 Glycosyl transferase family, a/b domain DSM104440_02104 PF02885 Glycosyl transferase family, helical bundle domain DSM104440_02106 PF00149 Calcineurin-like phosphoesterase DSM104440_02106 PF00746 LPXTG cell wall anchor motif DSM104440_02106 PF02872 5'-nucleotidase, C-terminal domain DSM104440_02106 PF00565 Staphylococcal nuclease homologue DSM104440_02107 PF00925 GTP cyclohydrolase II DSM104440_02110 PF00593 TonB dependent receptor DSM104440_02115 PF01066 CDP-alcohol phosphatidyltransferase DSM104440_02116 PF08459 UvrC Helix-hairpin-helix N-terminal DSM104440_02116 PF02151 UvrB/uvrC motif DSM104440_02116 PF01541 GIY-YIG catalytic domain DSM104440_02117 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104440_02118 PF01648 4'-phosphopantetheinyl transferase superfamily DSM104440_02119 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DSM104440_02120 PF02565 Recombination protein O C terminal DSM104440_02120 PF11967 Recombination protein O N terminal DSM104440_02121 PF01926 50S ribosome-binding GTPase DSM104440_02121 PF07650 KH domain DSM104440_02122 PF00035 Double-stranded RNA binding motif DSM104440_02122 PF14622 Ribonuclease-III-like DSM104440_02124 PF10502 Signal peptidase, peptidase S26 DSM104440_02125 PF06421 GTP-binding protein LepA C-terminus DSM104440_02125 PF00679 Elongation factor G C-terminus DSM104440_02125 PF00009 Elongation factor Tu GTP binding domain DSM104440_02125 PF03144 Elongation factor Tu domain 2 DSM104440_02127 PF13180 PDZ domain DSM104440_02130 PF08281 Sigma-70, region 4 DSM104440_02130 PF04542 Sigma-70 region 2 DSM104440_02131 PF00890 FAD binding domain DSM104440_02131 PF02910 Fumarate reductase flavoprotein C-term DSM104440_02132 PF01256 Carbohydrate kinase DSM104440_02132 PF03853 YjeF-related protein N-terminus DSM104440_02134 PF00478 IMP dehydrogenase / GMP reductase domain DSM104440_02134 PF00571 CBS domain DSM104440_02135 PF00005 ABC transporter DSM104440_02136 PF02687 FtsX-like permease family DSM104440_02136 PF12704 MacB-like periplasmic core domain DSM104440_02138 PF01757 Acyltransferase family DSM104440_02139 PF03352 Methyladenine glycosylase DSM104440_02139 PF00958 GMP synthase C terminal domain DSM104440_02139 PF00117 Glutamine amidotransferase class-I DSM104440_02139 PF13302 Acetyltransferase (GNAT) domain DSM104440_02139 PF13673 Acetyltransferase (GNAT) domain DSM104440_02142 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_02143 PF02515 CoA-transferase family III DSM104440_02148 PF13188 PAS domain DSM104440_02148 PF00563 EAL domain DSM104440_02148 PF03707 Bacterial signalling protein N terminal repeat DSM104440_02148 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02149 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104440_02149 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104440_02152 PF03061 Thioesterase superfamily DSM104440_02155 PF02405 Permease MlaE DSM104440_02156 PF00005 ABC transporter DSM104440_02156 PF09383 NIL domain DSM104440_02159 PF01568 Molydopterin dinucleotide binding domain DSM104440_02159 PF00384 Molybdopterin oxidoreductase DSM104440_02159 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104440_02162 PF05195 Aminopeptidase P, N-terminal domain DSM104440_02162 PF00557 Metallopeptidase family M24 DSM104440_02163 PF00392 Bacterial regulatory proteins, gntR family DSM104440_02163 PF07729 FCD domain DSM104440_02164 PF05544 Proline racemase DSM104440_02165 PF00701 Dihydrodipicolinate synthetase family DSM104440_02167 PF02245 Methylpurine-DNA glycosylase (MPG) DSM104440_02168 PF00326 Prolyl oligopeptidase family DSM104440_02168 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DSM104440_02168 PF07676 WD40-like Beta Propeller Repeat DSM104440_02170 PF12833 Helix-turn-helix domain DSM104440_02170 PF07883 Cupin domain DSM104440_02171 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_02173 PF12697 Alpha/beta hydrolase family DSM104440_02179 PF01266 FAD dependent oxidoreductase DSM104440_02180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104440_02181 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_02181 PF01799 [2Fe-2S] binding domain DSM104440_02182 PF03641 Possible lysine decarboxylase DSM104440_02184 PF16363 GDP-mannose 4,6 dehydratase DSM104440_02187 PF00106 short chain dehydrogenase DSM104440_02191 PF12852 Cupin DSM104440_02191 PF12833 Helix-turn-helix domain DSM104440_02192 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DSM104440_02192 PF11867 Domain of unknown function (DUF3387) DSM104440_02192 PF18766 SWI2/SNF2 ATPase DSM104440_02196 PF01420 Type I restriction modification DNA specificity domain DSM104440_02197 PF02384 N-6 DNA Methylase DSM104440_02199 PF07724 AAA domain (Cdc48 subfamily) DSM104440_02199 PF02861 Clp amino terminal domain, pathogenicity island component DSM104440_02199 PF17871 AAA lid domain DSM104440_02199 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104440_02199 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02200 PF00535 Glycosyl transferase family 2 DSM104440_02201 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DSM104440_02201 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DSM104440_02205 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_02205 PF14821 Threonine synthase N terminus DSM104440_02206 PF03447 Homoserine dehydrogenase, NAD binding domain DSM104440_02206 PF00742 Homoserine dehydrogenase DSM104440_02206 PF01842 ACT domain DSM104440_02207 PF00155 Aminotransferase class I and II DSM104440_02208 PF04430 Protein of unknown function (DUF498/DUF598) DSM104440_02209 PF00226 DnaJ domain DSM104440_02209 PF00684 DnaJ central domain DSM104440_02209 PF01556 DnaJ C terminal domain DSM104440_02210 PF01556 DnaJ C terminal domain DSM104440_02210 PF00684 DnaJ central domain DSM104440_02210 PF00226 DnaJ domain DSM104440_02211 PF05088 Bacterial NAD-glutamate dehydrogenase DSM104440_02212 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104440_02213 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02214 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02215 PF00005 ABC transporter DSM104440_02217 PF00850 Histone deacetylase domain DSM104440_02219 PF07726 ATPase family associated with various cellular activities (AAA) DSM104440_02219 PF17863 AAA lid domain DSM104440_02221 PF01841 Transglutaminase-like superfamily DSM104440_02221 PF13559 Domain of unknown function (DUF4129) DSM104440_02221 PF11992 Domain of unknown function (DUF3488) DSM104440_02222 PF02810 SEC-C motif DSM104440_02222 PF01043 SecA preprotein cross-linking domain DSM104440_02222 PF07517 SecA DEAD-like domain DSM104440_02222 PF07516 SecA Wing and Scaffold domain DSM104440_02223 PF01551 Peptidase family M23 DSM104440_02223 PF01476 LysM domain DSM104440_02225 PF01975 Survival protein SurE DSM104440_02226 PF01431 Peptidase family M13 DSM104440_02226 PF05649 Peptidase family M13 DSM104440_02227 PF01979 Amidohydrolase family DSM104440_02228 PF02347 Glycine cleavage system P-protein DSM104440_02229 PF01597 Glycine cleavage H-protein DSM104440_02230 PF08669 Glycine cleavage T-protein C-terminal barrel domain DSM104440_02230 PF01571 Aminomethyltransferase folate-binding domain DSM104440_02231 PF00155 Aminotransferase class I and II DSM104440_02232 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_02232 PF00107 Zinc-binding dehydrogenase DSM104440_02236 PF00005 ABC transporter DSM104440_02236 PF08402 TOBE domain DSM104440_02237 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02239 PF13419 Haloacid dehalogenase-like hydrolase DSM104440_02243 PF00216 Bacterial DNA-binding protein DSM104440_02244 PF03147 Ferredoxin-fold anticodon binding domain DSM104440_02244 PF03484 tRNA synthetase B5 domain DSM104440_02244 PF01588 Putative tRNA binding domain DSM104440_02244 PF03483 B3/4 domain DSM104440_02244 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DSM104440_02245 PF01409 tRNA synthetases class II core domain (F) DSM104440_02245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DSM104440_02246 PF00453 Ribosomal protein L20 DSM104440_02247 PF01632 Ribosomal protein L35 DSM104440_02248 PF05198 Translation initiation factor IF-3, N-terminal domain DSM104440_02248 PF00707 Translation initiation factor IF-3, C-terminal domain DSM104440_02249 PF03129 Anticodon binding domain DSM104440_02249 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DSM104440_02249 PF02824 TGS domain DSM104440_02249 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104440_02250 PF01144 Coenzyme A transferase DSM104440_02251 PF01144 Coenzyme A transferase DSM104440_02253 PF02653 Branched-chain amino acid transport system / permease component DSM104440_02254 PF02653 Branched-chain amino acid transport system / permease component DSM104440_02255 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104440_02255 PF00005 ABC transporter DSM104440_02256 PF00005 ABC transporter DSM104440_02257 PF01774 UreD urease accessory protein DSM104440_02258 PF00547 Urease, gamma subunit DSM104440_02259 PF00699 Urease beta subunit DSM104440_02260 PF01979 Amidohydrolase family DSM104440_02260 PF00449 Urease alpha-subunit, N-terminal domain DSM104440_02261 PF05194 UreE urease accessory protein, C-terminal domain DSM104440_02261 PF02814 UreE urease accessory protein, N-terminal domain DSM104440_02262 PF01730 UreF DSM104440_02263 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104440_02267 PF10672 S-adenosylmethionine-dependent methyltransferase DSM104440_02267 PF17785 PUA-like domain DSM104440_02269 PF04607 Region found in RelA / SpoT proteins DSM104440_02269 PF13291 ACT domain DSM104440_02269 PF02824 TGS domain DSM104440_02271 PF14403 Circularly permuted ATP-grasp type 2 DSM104440_02272 PF04168 A predicted alpha-helical domain with a conserved ER motif. DSM104440_02272 PF14403 Circularly permuted ATP-grasp type 2 DSM104440_02277 PF00753 Metallo-beta-lactamase superfamily DSM104440_02277 PF03772 Competence protein DSM104440_02279 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain DSM104440_02279 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104440_02284 PF02735 Ku70/Ku80 beta-barrel domain DSM104440_02287 PF00005 ABC transporter DSM104440_02288 PF02687 FtsX-like permease family DSM104440_02288 PF12704 MacB-like periplasmic core domain DSM104440_02290 PF01368 DHH family DSM104440_02290 PF02272 DHHA1 domain DSM104440_02290 PF17768 RecJ OB domain DSM104440_02292 PF07715 TonB-dependent Receptor Plug Domain DSM104440_02292 PF00593 TonB dependent receptor DSM104440_02293 PF03462 PCRF domain DSM104440_02293 PF00472 RF-1 domain DSM104440_02294 PF01546 Peptidase family M20/M25/M40 DSM104440_02294 PF07687 Peptidase dimerisation domain DSM104440_02295 PF00152 tRNA synthetases class II (D, K and N) DSM104440_02295 PF01336 OB-fold nucleic acid binding domain DSM104440_02297 PF00919 Uncharacterized protein family UPF0004 DSM104440_02297 PF18693 TRAM domain DSM104440_02297 PF04055 Radical SAM superfamily DSM104440_02298 PF05233 PHB accumulation regulatory domain DSM104440_02298 PF07879 PHB/PHA accumulation regulator DNA-binding domain DSM104440_02300 PF00106 short chain dehydrogenase DSM104440_02301 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104440_02301 PF00326 Prolyl oligopeptidase family DSM104440_02302 PF00072 Response regulator receiver domain DSM104440_02302 PF00196 Bacterial regulatory proteins, luxR family DSM104440_02303 PF07730 Histidine kinase DSM104440_02303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_02303 PF13492 GAF domain DSM104440_02306 PF00106 short chain dehydrogenase DSM104440_02307 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DSM104440_02309 PF02578 Multi-copper polyphenol oxidoreductase laccase DSM104440_02310 PF00849 RNA pseudouridylate synthase DSM104440_02311 PF13525 Outer membrane lipoprotein DSM104440_02312 PF13089 Polyphosphate kinase N-terminal domain DSM104440_02312 PF02503 Polyphosphate kinase middle domain DSM104440_02312 PF13090 Polyphosphate kinase C-terminal domain 2 DSM104440_02312 PF17941 Polyphosphate kinase C-terminal domain 1 DSM104440_02313 PF02541 Ppx/GppA phosphatase family DSM104440_02314 PF00300 Histidine phosphatase superfamily (branch 1) DSM104440_02316 PF05721 Phytanoyl-CoA dioxygenase (PhyH) DSM104440_02318 PF00005 ABC transporter DSM104440_02319 PF13472 GDSL-like Lipase/Acylhydrolase family DSM104440_02320 PF00581 Rhodanese-like domain DSM104440_02321 PF03793 PASTA domain DSM104440_02321 PF00069 Protein kinase domain DSM104440_02322 PF02542 YgbB family DSM104440_02323 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DSM104440_02324 PF01464 Transglycosylase SLT domain DSM104440_02324 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104440_02325 PF00300 Histidine phosphatase superfamily (branch 1) DSM104440_02326 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104440_02326 PF02403 Seryl-tRNA synthetase N-terminal domain DSM104440_02327 PF16193 AAA C-terminal domain DSM104440_02327 PF12002 MgsA AAA+ ATPase C terminal DSM104440_02327 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02328 PF03466 LysR substrate binding domain DSM104440_02328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02330 PF02558 Ketopantoate reductase PanE/ApbA DSM104440_02330 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104440_02331 PF00464 Serine hydroxymethyltransferase DSM104440_02332 PF00266 Aminotransferase class-V DSM104440_02333 PF03548 Outer membrane lipoprotein carrier protein LolA DSM104440_02334 PF09397 Ftsk gamma domain DSM104440_02334 PF01580 FtsK/SpoIIIE family DSM104440_02334 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DSM104440_02334 PF17854 FtsK alpha domain DSM104440_02335 PF00027 Cyclic nucleotide-binding domain DSM104440_02335 PF13545 Crp-like helix-turn-helix domain DSM104440_02336 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_02338 PF00731 AIR carboxylase DSM104440_02339 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DSM104440_02339 PF02222 ATP-grasp domain DSM104440_02341 PF06167 Glucose-regulated metallo-peptidase M90 DSM104440_02344 PF00543 Nitrogen regulatory protein P-II DSM104440_02345 PF02540 NAD synthase DSM104440_02345 PF00795 Carbon-nitrogen hydrolase DSM104440_02348 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_02349 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_02350 PF02515 CoA-transferase family III DSM104440_02351 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_02352 PF10531 SLBB domain DSM104440_02354 PF01370 NAD dependent epimerase/dehydratase family DSM104440_02355 PF00294 pfkB family carbohydrate kinase DSM104440_02356 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DSM104440_02356 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DSM104440_02356 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DSM104440_02357 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DSM104440_02358 PF18073 Rubredoxin metal binding domain DSM104440_02362 PF00535 Glycosyl transferase family 2 DSM104440_02363 PF00216 Bacterial DNA-binding protein DSM104440_02364 PF00575 S1 RNA binding domain DSM104440_02365 PF02224 Cytidylate kinase DSM104440_02366 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DSM104440_02367 PF02153 Prephenate dehydrogenase DSM104440_02367 PF01842 ACT domain DSM104440_02368 PF00155 Aminotransferase class I and II DSM104440_02369 PF01817 Chorismate mutase type II DSM104440_02369 PF01842 ACT domain DSM104440_02369 PF00800 Prephenate dehydratase DSM104440_02370 PF01842 ACT domain DSM104440_02370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_02370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_02371 PF00266 Aminotransferase class-V DSM104440_02372 PF03989 DNA gyrase C-terminal domain, beta-propeller DSM104440_02372 PF00521 DNA gyrase/topoisomerase IV, subunit A DSM104440_02373 PF00691 OmpA family DSM104440_02374 PF01979 Amidohydrolase family DSM104440_02376 PF13419 Haloacid dehalogenase-like hydrolase DSM104440_02379 PF08323 Starch synthase catalytic domain DSM104440_02379 PF00534 Glycosyl transferases group 1 DSM104440_02380 PF00535 Glycosyl transferase family 2 DSM104440_02381 PF14307 Glycosyltransferase WbsX DSM104440_02381 PF05045 Rhamnan synthesis protein F DSM104440_02383 PF02743 Cache domain DSM104440_02383 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_02383 PF00672 HAMP domain DSM104440_02385 PF03704 Bacterial transcriptional activator domain DSM104440_02385 PF00486 Transcriptional regulatory protein, C terminal DSM104440_02385 PF00931 NB-ARC domain DSM104440_02389 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02389 PF01434 Peptidase family M41 DSM104440_02389 PF17862 AAA+ lid domain DSM104440_02392 PF00080 Copper/zinc superoxide dismutase (SODC) DSM104440_02394 PF01292 Prokaryotic cytochrome b561 DSM104440_02396 PF13247 4Fe-4S dicluster domain DSM104440_02397 PF00384 Molybdopterin oxidoreductase DSM104440_02397 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104440_02397 PF01568 Molydopterin dinucleotide binding domain DSM104440_02403 PF04055 Radical SAM superfamily DSM104440_02403 PF06463 Molybdenum Cofactor Synthesis C DSM104440_02404 PF02634 FdhD/NarQ family DSM104440_02406 PF12804 MobA-like NTP transferase domain DSM104440_02408 PF03453 MoeA N-terminal region (domain I and II) DSM104440_02408 PF03454 MoeA C-terminal region (domain IV) DSM104440_02408 PF00994 Probable molybdopterin binding domain DSM104440_02410 PF00440 Bacterial regulatory proteins, tetR family DSM104440_02410 PF08359 YsiA-like protein, C-terminal region DSM104440_02411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_02412 PF00873 AcrB/AcrD/AcrF family DSM104440_02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02415 PF03466 LysR substrate binding domain DSM104440_02416 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DSM104440_02416 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DSM104440_02418 PF01507 Phosphoadenosine phosphosulfate reductase family DSM104440_02419 PF01507 Phosphoadenosine phosphosulfate reductase family DSM104440_02420 PF00009 Elongation factor Tu GTP binding domain DSM104440_02421 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104440_02423 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02424 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02425 PF00005 ABC transporter DSM104440_02425 PF17850 CysA C-terminal regulatory domain DSM104440_02425 PF12857 TOBE-like domain DSM104440_02426 PF00175 Oxidoreductase NAD-binding domain DSM104440_02426 PF00970 Oxidoreductase FAD-binding domain DSM104440_02428 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DSM104440_02430 PF00034 Cytochrome c DSM104440_02431 PF03264 NapC/NirT cytochrome c family, N-terminal region DSM104440_02436 PF04055 Radical SAM superfamily DSM104440_02436 PF06463 Molybdenum Cofactor Synthesis C DSM104440_02438 PF02335 Cytochrome c552 DSM104440_02439 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DSM104440_02440 PF04377 Arginine-tRNA-protein transferase, C terminus DSM104440_02440 PF04376 Arginine-tRNA-protein transferase, N terminus DSM104440_02441 PF01180 Dihydroorotate dehydrogenase DSM104440_02442 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DSM104440_02442 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DSM104440_02443 PF04060 Putative Fe-S cluster DSM104440_02444 PF10576 Iron-sulfur binding domain of endonuclease III DSM104440_02444 PF00633 Helix-hairpin-helix motif DSM104440_02444 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104440_02450 PF04545 Sigma-70, region 4 DSM104440_02450 PF04542 Sigma-70 region 2 DSM104440_02451 PF08448 PAS fold DSM104440_02451 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02451 PF00563 EAL domain DSM104440_02452 PF00929 Exonuclease DSM104440_02453 PF00075 RNase H DSM104440_02455 PF00753 Metallo-beta-lactamase superfamily DSM104440_02455 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104440_02461 PF01464 Transglycosylase SLT domain DSM104440_02461 PF01476 LysM domain DSM104440_02462 PF01432 Peptidase family M3 DSM104440_02463 PF00005 ABC transporter DSM104440_02463 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104440_02465 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02466 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02467 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02473 PF02190 ATP-dependent protease La (LON) substrate-binding domain DSM104440_02473 PF05362 Lon protease (S16) C-terminal proteolytic domain DSM104440_02473 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02474 PF06689 ClpX C4-type zinc finger DSM104440_02474 PF07724 AAA domain (Cdc48 subfamily) DSM104440_02474 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104440_02475 PF00574 Clp protease DSM104440_02476 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104440_02476 PF05697 Bacterial trigger factor protein (TF) DSM104440_02476 PF05698 Bacterial trigger factor protein (TF) C-terminus DSM104440_02480 PF01593 Flavin containing amine oxidoreductase DSM104440_02481 PF00106 short chain dehydrogenase DSM104440_02484 PF03793 PASTA domain DSM104440_02484 PF00069 Protein kinase domain DSM104440_02485 PF18073 Rubredoxin metal binding domain DSM104440_02486 PF01168 Alanine racemase, N-terminal domain DSM104440_02486 PF00842 Alanine racemase, C-terminal domain DSM104440_02487 PF00772 DnaB-like helicase N terminal domain DSM104440_02487 PF03796 DnaB-like helicase C terminal domain DSM104440_02488 PF03948 Ribosomal protein L9, C-terminal domain DSM104440_02488 PF01281 Ribosomal protein L9, N-terminal domain DSM104440_02489 PF01084 Ribosomal protein S18 DSM104440_02491 PF01250 Ribosomal protein S6 DSM104440_02492 PF01370 NAD dependent epimerase/dehydratase family DSM104440_02496 PF13614 AAA domain DSM104440_02499 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DSM104440_02502 PF13439 Glycosyltransferase Family 4 DSM104440_02502 PF00534 Glycosyl transferases group 1 DSM104440_02503 PF04321 RmlD substrate binding domain DSM104440_02506 PF16363 GDP-mannose 4,6 dehydratase DSM104440_02508 PF01451 Low molecular weight phosphotyrosine protein phosphatase DSM104440_02509 PF00483 Nucleotidyl transferase DSM104440_02509 PF01050 Mannose-6-phosphate isomerase DSM104440_02511 PF17843 MycE methyltransferase N-terminal DSM104440_02512 PF17843 MycE methyltransferase N-terminal DSM104440_02513 PF00675 Insulinase (Peptidase family M16) DSM104440_02513 PF05193 Peptidase M16 inactive domain DSM104440_02514 PF08032 RNA 2'-O ribose methyltransferase substrate binding DSM104440_02514 PF00588 SpoU rRNA Methylase family DSM104440_02515 PF00773 RNB domain DSM104440_02515 PF08206 Ribonuclease B OB domain DSM104440_02515 PF08461 Ribonuclease R winged-helix domain DSM104440_02515 PF00575 S1 RNA binding domain DSM104440_02515 PF17876 Cold shock domain DSM104440_02518 PF00709 Adenylosuccinate synthetase DSM104440_02519 PF13393 Histidyl-tRNA synthetase DSM104440_02521 PF01145 SPFH domain / Band 7 family DSM104440_02522 PF01145 SPFH domain / Band 7 family DSM104440_02522 PF12221 Bacterial membrane protein N terminal DSM104440_02523 PF16360 GTP-binding GTPase Middle Region DSM104440_02523 PF13167 GTP-binding GTPase N-terminal DSM104440_02523 PF01926 50S ribosome-binding GTPase DSM104440_02524 PF17209 Hfq protein DSM104440_02525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DSM104440_02525 PF01926 50S ribosome-binding GTPase DSM104440_02526 PF13360 PQQ-like domain DSM104440_02527 PF09976 Tetratricopeptide repeat-like domain DSM104440_02528 PF03129 Anticodon binding domain DSM104440_02528 PF13393 Histidyl-tRNA synthetase DSM104440_02529 PF04551 GcpE protein DSM104440_02530 PF13464 Domain of unknown function (DUF4115) DSM104440_02532 PF04055 Radical SAM superfamily DSM104440_02533 PF00334 Nucleoside diphosphate kinase DSM104440_02534 PF01171 PP-loop family DSM104440_02534 PF09179 TilS substrate binding domain DSM104440_02534 PF11734 TilS substrate C-terminal domain DSM104440_02535 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DSM104440_02536 PF01923 Cobalamin adenosyltransferase DSM104440_02537 PF04542 Sigma-70 region 2 DSM104440_02537 PF04545 Sigma-70, region 4 DSM104440_02540 PF01497 Periplasmic binding protein DSM104440_02541 PF18152 DAHP synthase ferredoxin-like domain DSM104440_02541 PF00793 DAHP synthetase I family DSM104440_02542 PF00793 DAHP synthetase I family DSM104440_02543 PF00793 DAHP synthetase I family DSM104440_02546 PF00550 Phosphopantetheine attachment site DSM104440_02547 PF07977 FabA-like domain DSM104440_02551 PF02801 Beta-ketoacyl synthase, C-terminal domain DSM104440_02551 PF00109 Beta-ketoacyl synthase, N-terminal domain DSM104440_02556 PF01641 SelR domain DSM104440_02558 PF01523 Putative modulator of DNA gyrase DSM104440_02559 PF00795 Carbon-nitrogen hydrolase DSM104440_02561 PF03710 Glutamate-ammonia ligase adenylyltransferase DSM104440_02561 PF08335 GlnD PII-uridylyltransferase DSM104440_02562 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_02563 PF01063 Amino-transferase class IV DSM104440_02565 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104440_02569 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_02570 PF00072 Response regulator receiver domain DSM104440_02575 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_02575 PF01799 [2Fe-2S] binding domain DSM104440_02576 PF07634 RtxA repeat DSM104440_02576 PF12146 Serine aminopeptidase, S33 DSM104440_02576 PF11647 Membrane Localization Domain DSM104440_02576 PF11713 Peptidase C80 family DSM104440_02576 PF16671 Actin cross-linking domain DSM104440_02578 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104440_02579 PF01799 [2Fe-2S] binding domain DSM104440_02579 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_02581 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02583 PF03958 Bacterial type II/III secretion system short domain DSM104440_02583 PF00263 Bacterial type II and III secretion system protein DSM104440_02584 PF00437 Type II/IV secretion system protein DSM104440_02586 PF00482 Type II secretion system (T2SS), protein F DSM104440_02587 PF08334 Type II secretion system (T2SS), protein G DSM104440_02587 PF07963 Prokaryotic N-terminal methylation motif DSM104440_02589 PF07963 Prokaryotic N-terminal methylation motif DSM104440_02589 PF02501 Type II secretion system (T2SS), protein I DSM104440_02590 PF11612 Type II secretion system (T2SS), protein J DSM104440_02590 PF07963 Prokaryotic N-terminal methylation motif DSM104440_02595 PF00561 alpha/beta hydrolase fold DSM104440_02596 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DSM104440_02596 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DSM104440_02596 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DSM104440_02596 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DSM104440_02598 PF00072 Response regulator receiver domain DSM104440_02598 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_02601 PF00561 alpha/beta hydrolase fold DSM104440_02610 PF13417 Glutathione S-transferase, N-terminal domain DSM104440_02610 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_02614 PF00293 NUDIX domain DSM104440_02615 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_02615 PF14497 Glutathione S-transferase, C-terminal domain DSM104440_02616 PF04542 Sigma-70 region 2 DSM104440_02616 PF08281 Sigma-70, region 4 DSM104440_02623 PF00326 Prolyl oligopeptidase family DSM104440_02623 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104440_02624 PF00664 ABC transporter transmembrane region DSM104440_02624 PF00005 ABC transporter DSM104440_02630 PF00144 Beta-lactamase DSM104440_02634 PF01625 Peptide methionine sulfoxide reductase DSM104440_02635 PF09997 Predicted membrane protein (DUF2238) DSM104440_02636 PF00480 ROK family DSM104440_02637 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02637 PF03707 Bacterial signalling protein N terminal repeat DSM104440_02637 PF00563 EAL domain DSM104440_02639 PF01219 Prokaryotic diacylglycerol kinase DSM104440_02640 PF00534 Glycosyl transferases group 1 DSM104440_02640 PF13439 Glycosyltransferase Family 4 DSM104440_02643 PF01425 Amidase DSM104440_02644 PF02600 Disulfide bond formation protein DsbB DSM104440_02645 PF16655 PhoD-like phosphatase, N-terminal domain DSM104440_02645 PF09423 PhoD-like phosphatase DSM104440_02648 PF00106 short chain dehydrogenase DSM104440_02656 PF02705 K+ potassium transporter DSM104440_02660 PF02586 SOS response associated peptidase (SRAP) DSM104440_02661 PF00194 Eukaryotic-type carbonic anhydrase DSM104440_02663 PF03466 LysR substrate binding domain DSM104440_02663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02668 PF02254 TrkA-N domain DSM104440_02668 PF00999 Sodium/hydrogen exchanger family DSM104440_02669 PF08207 Elongation factor P (EF-P) KOW-like domain DSM104440_02669 PF01132 Elongation factor P (EF-P) OB domain DSM104440_02669 PF09285 Elongation factor P, C-terminal DSM104440_02672 PF02321 Outer membrane efflux protein DSM104440_02672 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DSM104440_02673 PF00873 AcrB/AcrD/AcrF family DSM104440_02674 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_02674 PF00529 HlyD membrane-fusion protein of T1SS DSM104440_02675 PF00440 Bacterial regulatory proteins, tetR family DSM104440_02675 PF08361 MAATS-type transcriptional repressor, C-terminal region DSM104440_02676 PF00561 alpha/beta hydrolase fold DSM104440_02680 PF00313 'Cold-shock' DNA-binding domain DSM104440_02682 PF00114 Pilin (bacterial filament) DSM104440_02682 PF07963 Prokaryotic N-terminal methylation motif DSM104440_02683 PF01336 OB-fold nucleic acid binding domain DSM104440_02683 PF00152 tRNA synthetases class II (D, K and N) DSM104440_02684 PF00873 AcrB/AcrD/AcrF family DSM104440_02685 PF13533 Biotin-lipoyl like DSM104440_02686 PF01546 Peptidase family M20/M25/M40 DSM104440_02687 PF13396 Phospholipase_D-nuclease N-terminal DSM104440_02687 PF13091 PLD-like domain DSM104440_02688 PF13472 GDSL-like Lipase/Acylhydrolase family DSM104440_02691 PF07690 Major Facilitator Superfamily DSM104440_02692 PF04151 Bacterial pre-peptidase C-terminal domain DSM104440_02692 PF04389 Peptidase family M28 DSM104440_02693 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02695 PF07152 YaeQ protein DSM104440_02696 PF08267 Cobalamin-independent synthase, N-terminal domain DSM104440_02696 PF01717 Cobalamin-independent synthase, Catalytic domain DSM104440_02697 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02697 PF03466 LysR substrate binding domain DSM104440_02698 PF02622 Uncharacterized ACR, COG1678 DSM104440_02699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_02699 PF06580 Histidine kinase DSM104440_02699 PF02743 Cache domain DSM104440_02699 PF00672 HAMP domain DSM104440_02700 PF00072 Response regulator receiver domain DSM104440_02700 PF04397 LytTr DNA-binding domain DSM104440_02701 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_02701 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_02702 PF01638 HxlR-like helix-turn-helix DSM104440_02704 PF00258 Flavodoxin DSM104440_02704 PF00175 Oxidoreductase NAD-binding domain DSM104440_02704 PF00667 FAD binding domain DSM104440_02704 PF00067 Cytochrome P450 DSM104440_02707 PF00486 Transcriptional regulatory protein, C terminal DSM104440_02709 PF03358 NADPH-dependent FMN reductase DSM104440_02716 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104440_02717 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02718 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02719 PF00005 ABC transporter DSM104440_02720 PF01546 Peptidase family M20/M25/M40 DSM104440_02720 PF07687 Peptidase dimerisation domain DSM104440_02721 PF01546 Peptidase family M20/M25/M40 DSM104440_02721 PF07687 Peptidase dimerisation domain DSM104440_02723 PF05726 Pirin C-terminal cupin domain DSM104440_02723 PF02678 Pirin DSM104440_02724 PF00270 DEAD/DEAH box helicase DSM104440_02724 PF00271 Helicase conserved C-terminal domain DSM104440_02726 PF01554 MatE DSM104440_02728 PF00542 Ribosomal protein L7/L12 C-terminal domain DSM104440_02728 PF16320 Ribosomal protein L7/L12 dimerisation domain DSM104440_02732 PF00561 alpha/beta hydrolase fold DSM104440_02734 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02734 PF01434 Peptidase family M41 DSM104440_02734 PF17862 AAA+ lid domain DSM104440_02736 PF01139 tRNA-splicing ligase RtcB DSM104440_02738 PF03795 YCII-related domain DSM104440_02739 PF07690 Major Facilitator Superfamily DSM104440_02741 PF00440 Bacterial regulatory proteins, tetR family DSM104440_02742 PF13533 Biotin-lipoyl like DSM104440_02743 PF00873 AcrB/AcrD/AcrF family DSM104440_02744 PF02321 Outer membrane efflux protein DSM104440_02745 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_02746 PF00206 Lyase DSM104440_02746 PF14698 Argininosuccinate lyase C-terminal DSM104440_02748 PF03466 LysR substrate binding domain DSM104440_02748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02749 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104440_02754 PF01555 DNA methylase DSM104440_02755 PF00268 Ribonucleotide reductase, small chain DSM104440_02757 PF03477 ATP cone domain DSM104440_02757 PF00317 Ribonucleotide reductase, all-alpha domain DSM104440_02757 PF02867 Ribonucleotide reductase, barrel domain DSM104440_02760 PF00882 Zinc dependent phospholipase C DSM104440_02766 PF02321 Outer membrane efflux protein DSM104440_02767 PF00873 AcrB/AcrD/AcrF family DSM104440_02768 PF00529 HlyD membrane-fusion protein of T1SS DSM104440_02768 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_02769 PF01510 N-acetylmuramoyl-L-alanine amidase DSM104440_02770 PF00158 Sigma-54 interaction domain DSM104440_02770 PF00072 Response regulator receiver domain DSM104440_02770 PF02954 Bacterial regulatory protein, Fis family DSM104440_02771 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_02771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_02773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_02774 PF00486 Transcriptional regulatory protein, C terminal DSM104440_02774 PF00072 Response regulator receiver domain DSM104440_02777 PF00348 Polyprenyl synthetase DSM104440_02778 PF00829 Ribosomal prokaryotic L21 protein DSM104440_02779 PF01016 Ribosomal L27 protein DSM104440_02780 PF01810 LysE type translocator DSM104440_02781 PF01018 GTP1/OBG DSM104440_02781 PF01926 50S ribosome-binding GTPase DSM104440_02782 PF00696 Amino acid kinase family DSM104440_02782 PF01472 PUA domain DSM104440_02786 PF04893 Yip1 domain DSM104440_02787 PF00293 NUDIX domain DSM104440_02788 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104440_02788 PF04073 Aminoacyl-tRNA editing domain DSM104440_02788 PF03129 Anticodon binding domain DSM104440_02789 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DSM104440_02789 PF01464 Transglycosylase SLT domain DSM104440_02791 PF00578 AhpC/TSA family DSM104440_02793 PF03631 Virulence factor BrkB DSM104440_02796 PF09335 SNARE associated Golgi protein DSM104440_02797 PF02355 Protein export membrane protein DSM104440_02797 PF07549 SecD/SecF GG Motif DSM104440_02798 PF07549 SecD/SecF GG Motif DSM104440_02798 PF02355 Protein export membrane protein DSM104440_02798 PF13721 SecD export protein N-terminal TM region DSM104440_02799 PF02699 Preprotein translocase subunit DSM104440_02800 PF01702 Queuine tRNA-ribosyltransferase DSM104440_02802 PF03030 Inorganic H+ pyrophosphatase DSM104440_02803 PF00365 Phosphofructokinase DSM104440_02804 PF05191 Adenylate kinase, active site lid DSM104440_02805 PF02348 Cytidylyltransferase DSM104440_02806 PF03966 Trm112p-like protein DSM104440_02807 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DSM104440_02810 PF13742 OB-fold nucleic acid binding domain DSM104440_02810 PF02601 Exonuclease VII, large subunit DSM104440_02811 PF07311 Dodecin DSM104440_02813 PF01119 DNA mismatch repair protein, C-terminal domain DSM104440_02813 PF08676 MutL C terminal dimerisation domain DSM104440_02814 PF03707 Bacterial signalling protein N terminal repeat DSM104440_02814 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02814 PF00563 EAL domain DSM104440_02815 PF11741 AMIN domain DSM104440_02815 PF01520 N-acetylmuramoyl-L-alanine amidase DSM104440_02816 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DSM104440_02817 PF08331 Domain of unknown function (DUF1730) DSM104440_02822 PF07995 Glucose / Sorbosone dehydrogenase DSM104440_02823 PF01565 FAD binding domain DSM104440_02825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_02825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104440_02825 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104440_02826 PF01963 TraB family DSM104440_02827 PF01272 Transcription elongation factor, GreA/GreB, C-term DSM104440_02827 PF03449 Transcription elongation factor, N-terminal DSM104440_02828 PF01914 MarC family integral membrane protein DSM104440_02829 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_02831 PF04977 Septum formation initiator DSM104440_02832 PF03952 Enolase, N-terminal domain DSM104440_02832 PF00113 Enolase, C-terminal TIM barrel domain DSM104440_02839 PF00883 Cytosol aminopeptidase family, catalytic domain DSM104440_02839 PF02789 Cytosol aminopeptidase family, N-terminal domain DSM104440_02844 PF08241 Methyltransferase domain DSM104440_02846 PF00593 TonB dependent receptor DSM104440_02846 PF07715 TonB-dependent Receptor Plug Domain DSM104440_02848 PF04973 Nicotinamide mononucleotide transporter DSM104440_02853 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104440_02854 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_02854 PF01799 [2Fe-2S] binding domain DSM104440_02856 PF00732 GMC oxidoreductase DSM104440_02856 PF05199 GMC oxidoreductase DSM104440_02859 PF00672 HAMP domain DSM104440_02859 PF00909 Ammonium Transporter Family DSM104440_02862 PF00793 DAHP synthetase I family DSM104440_02863 PF00117 Glutamine amidotransferase class-I DSM104440_02863 PF06418 CTP synthase N-terminus DSM104440_02866 PF01008 Initiation factor 2 subunit family DSM104440_02867 PF00596 Class II Aldolase and Adducin N-terminal domain DSM104440_02869 PF01266 FAD dependent oxidoreductase DSM104440_02870 PF16701 Adenylate cyclase regulatory domain DSM104440_02870 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_02871 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DSM104440_02871 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DSM104440_02874 PF01546 Peptidase family M20/M25/M40 DSM104440_02874 PF07687 Peptidase dimerisation domain DSM104440_02878 PF01370 NAD dependent epimerase/dehydratase family DSM104440_02881 PF01042 Endoribonuclease L-PSP DSM104440_02883 PF13291 ACT domain DSM104440_02883 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_02884 PF01266 FAD dependent oxidoreductase DSM104440_02887 PF00342 Phosphoglucose isomerase DSM104440_02888 PF17149 Periplasmic sensor domain found in signal transduction proteins DSM104440_02888 PF00672 HAMP domain DSM104440_02888 PF00072 Response regulator receiver domain DSM104440_02888 PF01627 Hpt domain DSM104440_02888 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_02888 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_02889 PF07859 alpha/beta hydrolase fold DSM104440_02897 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DSM104440_02897 PF01266 FAD dependent oxidoreductase DSM104440_02898 PF00293 NUDIX domain DSM104440_02899 PF00361 Proton-conducting membrane transporter DSM104440_02900 PF00361 Proton-conducting membrane transporter DSM104440_02900 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DSM104440_02901 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DSM104440_02901 PF00361 Proton-conducting membrane transporter DSM104440_02902 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DSM104440_02903 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DSM104440_02904 PF12838 4Fe-4S dicluster domain DSM104440_02905 PF00146 NADH dehydrogenase DSM104440_02906 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104440_02906 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DSM104440_02906 PF00384 Molybdopterin oxidoreductase DSM104440_02907 PF10531 SLBB domain DSM104440_02907 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104440_02907 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104440_02910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DSM104440_02911 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DSM104440_02912 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DSM104440_02913 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DSM104440_02915 PF03840 Preprotein translocase SecG subunit DSM104440_02916 PF00121 Triosephosphate isomerase DSM104440_02920 PF01758 Sodium Bile acid symporter family DSM104440_02922 PF00005 ABC transporter DSM104440_02923 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02924 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_02925 PF12849 PBP superfamily domain DSM104440_02926 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DSM104440_02926 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DSM104440_02926 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DSM104440_02926 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DSM104440_02927 PF00809 Pterin binding enzyme DSM104440_02928 PF06480 FtsH Extracellular DSM104440_02928 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_02928 PF17862 AAA+ lid domain DSM104440_02928 PF01434 Peptidase family M41 DSM104440_02929 PF01728 FtsJ-like methyltransferase DSM104440_02931 PF03449 Transcription elongation factor, N-terminal DSM104440_02931 PF01272 Transcription elongation factor, GreA/GreB, C-term DSM104440_02932 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DSM104440_02932 PF02142 MGS-like domain DSM104440_02932 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104440_02933 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DSM104440_02933 PF00117 Glutamine amidotransferase class-I DSM104440_02934 PF07670 Nucleoside recognition DSM104440_02934 PF01773 Na+ dependent nucleoside transporter N-terminus DSM104440_02934 PF07662 Na+ dependent nucleoside transporter C-terminus DSM104440_02935 PF05173 Dihydrodipicolinate reductase, C-terminus DSM104440_02935 PF01113 Dihydrodipicolinate reductase, N-terminus DSM104440_02936 PF04355 SmpA / OmlA family DSM104440_02937 PF01475 Ferric uptake regulator family DSM104440_02938 PF00545 ribonuclease DSM104440_02940 PF00171 Aldehyde dehydrogenase family DSM104440_02940 PF01619 Proline dehydrogenase DSM104440_02940 PF14850 DNA-binding domain of Proline dehydrogenase DSM104440_02940 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DSM104440_02941 PF00085 Thioredoxin DSM104440_02942 PF00210 Ferritin-like domain DSM104440_02946 PF02678 Pirin DSM104440_02946 PF17954 Quercetinase C-terminal cupin domain DSM104440_02947 PF03466 LysR substrate binding domain DSM104440_02947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_02948 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104440_02950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_02951 PF00873 AcrB/AcrD/AcrF family DSM104440_02954 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_02955 PF13419 Haloacid dehalogenase-like hydrolase DSM104440_02958 PF03793 PASTA domain DSM104440_02958 PF00069 Protein kinase domain DSM104440_02960 PF01970 Tripartite tricarboxylate transporter TctA family DSM104440_02962 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_02963 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104440_02964 PF00561 alpha/beta hydrolase fold DSM104440_02965 PF00501 AMP-binding enzyme DSM104440_02965 PF13193 AMP-binding enzyme C-terminal domain DSM104440_02967 PF00069 Protein kinase domain DSM104440_02967 PF03793 PASTA domain DSM104440_02969 PF01479 S4 domain DSM104440_02975 PF01161 Phosphatidylethanolamine-binding protein DSM104440_02976 PF05697 Bacterial trigger factor protein (TF) DSM104440_02976 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104440_02976 PF05698 Bacterial trigger factor protein (TF) C-terminus DSM104440_02978 PF00171 Aldehyde dehydrogenase family DSM104440_02979 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02981 PF03707 Bacterial signalling protein N terminal repeat DSM104440_02981 PF00563 EAL domain DSM104440_02981 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_02983 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02986 PF13649 Methyltransferase domain DSM104440_02988 PF08031 Berberine and berberine like DSM104440_02988 PF01565 FAD binding domain DSM104440_02989 PF01638 HxlR-like helix-turn-helix DSM104440_02990 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DSM104440_02992 PF04209 homogentisate 1,2-dioxygenase DSM104440_02993 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104440_02994 PF01037 Lrp/AsnC ligand binding domain DSM104440_02997 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02998 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104440_02999 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_03000 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104440_03000 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_03003 PF00005 ABC transporter DSM104440_03003 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104440_03004 PF00005 ABC transporter DSM104440_03004 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104440_03007 PF03062 MBOAT, membrane-bound O-acyltransferase family DSM104440_03010 PF00155 Aminotransferase class I and II DSM104440_03011 PF00271 Helicase conserved C-terminal domain DSM104440_03011 PF11898 Domain of unknown function (DUF3418) DSM104440_03011 PF04408 Helicase associated domain (HA2) DSM104440_03011 PF00270 DEAD/DEAH box helicase DSM104440_03011 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DSM104440_03014 PF04542 Sigma-70 region 2 DSM104440_03014 PF08281 Sigma-70, region 4 DSM104440_03017 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_03017 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_03018 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104440_03018 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104440_03019 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104440_03019 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104440_03020 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_03022 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_03024 PF02589 LUD domain DSM104440_03025 PF02589 LUD domain DSM104440_03025 PF13183 4Fe-4S dicluster domain DSM104440_03025 PF11870 Domain of unknown function (DUF3390) DSM104440_03026 PF02754 Cysteine-rich domain DSM104440_03027 PF01464 Transglycosylase SLT domain DSM104440_03027 PF01551 Peptidase family M23 DSM104440_03027 PF10145 Phage-related minor tail protein DSM104440_03028 PF00768 D-alanyl-D-alanine carboxypeptidase DSM104440_03029 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104440_03030 PF00561 alpha/beta hydrolase fold DSM104440_03031 PF00664 ABC transporter transmembrane region DSM104440_03031 PF00005 ABC transporter DSM104440_03032 PF07883 Cupin domain DSM104440_03037 PF12697 Alpha/beta hydrolase family DSM104440_03039 PF07715 TonB-dependent Receptor Plug Domain DSM104440_03039 PF00593 TonB dependent receptor DSM104440_03042 PF01261 Xylose isomerase-like TIM barrel DSM104440_03043 PF00595 PDZ domain DSM104440_03049 PF01168 Alanine racemase, N-terminal domain DSM104440_03049 PF14031 Putative serine dehydratase domain DSM104440_03050 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03051 PF12838 4Fe-4S dicluster domain DSM104440_03051 PF00384 Molybdopterin oxidoreductase DSM104440_03051 PF01568 Molydopterin dinucleotide binding domain DSM104440_03051 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104440_03051 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104440_03052 PF10531 SLBB domain DSM104440_03052 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104440_03052 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104440_03053 PF00571 CBS domain DSM104440_03054 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DSM104440_03054 PF07733 Bacterial DNA polymerase III alpha NTPase domain DSM104440_03054 PF11490 DNA polymerase III polC-type N-terminus II DSM104440_03054 PF02811 PHP domain DSM104440_03054 PF00929 Exonuclease DSM104440_03054 PF14579 Helix-hairpin-helix motif DSM104440_03055 PF02629 CoA binding domain DSM104440_03055 PF00549 CoA-ligase DSM104440_03056 PF08442 ATP-grasp domain DSM104440_03056 PF00549 CoA-ligase DSM104440_03058 PF03793 PASTA domain DSM104440_03058 PF00069 Protein kinase domain DSM104440_03061 PF00107 Zinc-binding dehydrogenase DSM104440_03061 PF08240 Alcohol dehydrogenase GroES-like domain DSM104440_03062 PF00551 Formyl transferase DSM104440_03062 PF02911 Formyl transferase, C-terminal domain DSM104440_03063 PF02515 CoA-transferase family III DSM104440_03064 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104440_03064 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104440_03064 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104440_03067 PF01970 Tripartite tricarboxylate transporter TctA family DSM104440_03070 PF03741 Integral membrane protein TerC family DSM104440_03071 PF14718 Soluble lytic murein transglycosylase L domain DSM104440_03071 PF01464 Transglycosylase SLT domain DSM104440_03073 PF12627 Probable RNA and SrmB- binding site of polymerase A DSM104440_03073 PF01743 Poly A polymerase head domain DSM104440_03073 PF01966 HD domain DSM104440_03076 PF16868 NMT1-like family DSM104440_03077 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DSM104440_03077 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DSM104440_03077 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DSM104440_03078 PF02233 NAD(P) transhydrogenase beta subunit DSM104440_03081 PF00072 Response regulator receiver domain DSM104440_03081 PF00486 Transcriptional regulatory protein, C terminal DSM104440_03082 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_03082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03090 PF01171 PP-loop family DSM104440_03093 PF00266 Aminotransferase class-V DSM104440_03097 PF01435 Peptidase family M48 DSM104440_03100 PF02219 Methylenetetrahydrofolate reductase DSM104440_03102 PF05221 S-adenosyl-L-homocysteine hydrolase DSM104440_03102 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DSM104440_03103 PF13417 Glutathione S-transferase, N-terminal domain DSM104440_03108 PF00741 Gas vesicle protein DSM104440_03108 PF05121 Gas vesicle protein K DSM104440_03112 PF00741 Gas vesicle protein DSM104440_03113 PF00741 Gas vesicle protein DSM104440_03114 PF00438 S-adenosylmethionine synthetase, N-terminal domain DSM104440_03114 PF02772 S-adenosylmethionine synthetase, central domain DSM104440_03114 PF02773 S-adenosylmethionine synthetase, C-terminal domain DSM104440_03116 PF01370 NAD dependent epimerase/dehydratase family DSM104440_03118 PF03279 Bacterial lipid A biosynthesis acyltransferase DSM104440_03119 PF01678 Diaminopimelate epimerase DSM104440_03121 PF00589 Phage integrase family DSM104440_03121 PF02899 Phage integrase, N-terminal SAM-like domain DSM104440_03122 PF07683 Cobalamin synthesis protein cobW C-terminal domain DSM104440_03122 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104440_03123 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104440_03123 PF07683 Cobalamin synthesis protein cobW C-terminal domain DSM104440_03125 PF00227 Proteasome subunit DSM104440_03126 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104440_03126 PF07724 AAA domain (Cdc48 subfamily) DSM104440_03126 PF00004 ATPase family associated with various cellular activities (AAA) DSM104440_03130 PF05114 Protein of unknown function (DUF692) DSM104440_03133 PF00011 Hsp20/alpha crystallin family DSM104440_03134 PF00696 Amino acid kinase family DSM104440_03136 PF03372 Endonuclease/Exonuclease/phosphatase family DSM104440_03137 PF00293 NUDIX domain DSM104440_03138 PF01112 Asparaginase DSM104440_03139 PF01336 OB-fold nucleic acid binding domain DSM104440_03139 PF02938 GAD domain DSM104440_03139 PF00152 tRNA synthetases class II (D, K and N) DSM104440_03142 PF01435 Peptidase family M48 DSM104440_03143 PF00436 Single-strand binding protein family DSM104440_03144 PF07690 Major Facilitator Superfamily DSM104440_03145 PF17755 UvrA DNA-binding domain DSM104440_03145 PF17760 UvrA interaction domain DSM104440_03146 PF05161 MOFRL family DSM104440_03146 PF13660 Domain of unknown function (DUF4147) DSM104440_03147 PF01196 Ribosomal protein L17 DSM104440_03148 PF01000 RNA polymerase Rpb3/RpoA insert domain DSM104440_03148 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DSM104440_03148 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DSM104440_03149 PF00163 Ribosomal protein S4/S9 N-terminal domain DSM104440_03149 PF01479 S4 domain DSM104440_03150 PF00411 Ribosomal protein S11 DSM104440_03151 PF00416 Ribosomal protein S13/S18 DSM104440_03152 PF00444 Ribosomal protein L36 DSM104440_03153 PF01176 Translation initiation factor 1A / IF-1 DSM104440_03154 PF00344 SecY translocase DSM104440_03155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DSM104440_03156 PF00327 Ribosomal protein L30p/L7e DSM104440_03157 PF00333 Ribosomal protein S5, N-terminal domain DSM104440_03157 PF03719 Ribosomal protein S5, C-terminal domain DSM104440_03158 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DSM104440_03159 PF00347 Ribosomal protein L6 DSM104440_03160 PF00410 Ribosomal protein S8 DSM104440_03161 PF00253 Ribosomal protein S14p/S29e DSM104440_03162 PF00673 ribosomal L5P family C-terminus DSM104440_03162 PF00281 Ribosomal protein L5 DSM104440_03163 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DSM104440_03164 PF00238 Ribosomal protein L14p/L23e DSM104440_03165 PF00366 Ribosomal protein S17 DSM104440_03166 PF00831 Ribosomal L29 protein DSM104440_03167 PF00252 Ribosomal protein L16p/L10e DSM104440_03168 PF07650 KH domain DSM104440_03168 PF00189 Ribosomal protein S3, C-terminal domain DSM104440_03169 PF00237 Ribosomal protein L22p/L17e DSM104440_03170 PF00203 Ribosomal protein S19 DSM104440_03171 PF03947 Ribosomal Proteins L2, C-terminal domain DSM104440_03171 PF00181 Ribosomal Proteins L2, RNA binding domain DSM104440_03172 PF00276 Ribosomal protein L23 DSM104440_03173 PF00573 Ribosomal protein L4/L1 family DSM104440_03174 PF00297 Ribosomal protein L3 DSM104440_03175 PF00338 Ribosomal protein S10p/S20e DSM104440_03176 PF03143 Elongation factor Tu C-terminal domain DSM104440_03176 PF03144 Elongation factor Tu domain 2 DSM104440_03176 PF00009 Elongation factor Tu GTP binding domain DSM104440_03177 PF00679 Elongation factor G C-terminus DSM104440_03177 PF03764 Elongation factor G, domain IV DSM104440_03177 PF00009 Elongation factor Tu GTP binding domain DSM104440_03177 PF03144 Elongation factor Tu domain 2 DSM104440_03177 PF14492 Elongation Factor G, domain II DSM104440_03178 PF00177 Ribosomal protein S7p/S5e DSM104440_03179 PF00164 Ribosomal protein S12/S23 DSM104440_03180 PF00623 RNA polymerase Rpb1, domain 2 DSM104440_03180 PF04997 RNA polymerase Rpb1, domain 1 DSM104440_03180 PF04983 RNA polymerase Rpb1, domain 3 DSM104440_03180 PF04998 RNA polymerase Rpb1, domain 5 DSM104440_03180 PF05000 RNA polymerase Rpb1, domain 4 DSM104440_03181 PF04563 RNA polymerase beta subunit DSM104440_03181 PF04560 RNA polymerase Rpb2, domain 7 DSM104440_03181 PF04561 RNA polymerase Rpb2, domain 2 DSM104440_03181 PF04565 RNA polymerase Rpb2, domain 3 DSM104440_03181 PF10385 RNA polymerase beta subunit external 1 domain DSM104440_03181 PF00562 RNA polymerase Rpb2, domain 6 DSM104440_03182 PF00542 Ribosomal protein L7/L12 C-terminal domain DSM104440_03182 PF16320 Ribosomal protein L7/L12 dimerisation domain DSM104440_03183 PF00466 Ribosomal protein L10 DSM104440_03184 PF00687 Ribosomal protein L1p/L10e family DSM104440_03185 PF03946 Ribosomal protein L11, N-terminal domain DSM104440_03185 PF00298 Ribosomal protein L11, RNA binding domain DSM104440_03186 PF00467 KOW motif DSM104440_03186 PF02357 Transcription termination factor nusG DSM104440_03187 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DSM104440_03189 PF03143 Elongation factor Tu C-terminal domain DSM104440_03189 PF00009 Elongation factor Tu GTP binding domain DSM104440_03189 PF03144 Elongation factor Tu domain 2 DSM104440_03194 PF04386 Stringent starvation protein B DSM104440_03195 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_03195 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_03196 PF02167 Cytochrome C1 family DSM104440_03197 PF00032 Cytochrome b(C-terminal)/b6/petD DSM104440_03197 PF00033 Cytochrome b/b6/petB DSM104440_03198 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DSM104440_03198 PF00355 Rieske [2Fe-2S] domain DSM104440_03199 PF01741 Large-conductance mechanosensitive channel, MscL DSM104440_03200 PF13180 PDZ domain DSM104440_03200 PF17820 PDZ domain DSM104440_03201 PF00902 Sec-independent protein translocase protein (TatC) DSM104440_03202 PF02416 mttA/Hcf106 family DSM104440_03203 PF02416 mttA/Hcf106 family DSM104440_03205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DSM104440_03206 PF01502 Phosphoribosyl-AMP cyclohydrolase DSM104440_03207 PF00977 Histidine biosynthesis protein DSM104440_03208 PF00977 Histidine biosynthesis protein DSM104440_03209 PF00117 Glutamine amidotransferase class-I DSM104440_03210 PF00475 Imidazoleglycerol-phosphate dehydratase DSM104440_03211 PF00155 Aminotransferase class I and II DSM104440_03212 PF00815 Histidinol dehydrogenase DSM104440_03213 PF01634 ATP phosphoribosyltransferase DSM104440_03214 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DSM104440_03215 PF01722 BolA-like protein DSM104440_03216 PF01061 ABC-2 type transporter DSM104440_03217 PF00005 ABC transporter DSM104440_03219 PF05494 MlaC protein DSM104440_03220 PF02470 MlaD protein DSM104440_03221 PF02405 Permease MlaE DSM104440_03222 PF00005 ABC transporter DSM104440_03223 PF00158 Sigma-54 interaction domain DSM104440_03223 PF00072 Response regulator receiver domain DSM104440_03223 PF02954 Bacterial regulatory protein, Fis family DSM104440_03224 PF01471 Putative peptidoglycan binding domain DSM104440_03224 PF13401 AAA domain DSM104440_03225 PF03958 Bacterial type II/III secretion system short domain DSM104440_03225 PF00263 Bacterial type II and III secretion system protein DSM104440_03227 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104440_03227 PF00437 Type II/IV secretion system protein DSM104440_03228 PF00482 Type II secretion system (T2SS), protein F DSM104440_03234 PF02649 Type I GTP cyclohydrolase folE2 DSM104440_03236 PF00117 Glutamine amidotransferase class-I DSM104440_03237 PF00691 OmpA family DSM104440_03238 PF04461 Protein of unknown function (DUF520) DSM104440_03239 PF00764 Arginosuccinate synthase DSM104440_03240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DSM104440_03240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DSM104440_03241 PF00202 Aminotransferase class-III DSM104440_03242 PF01649 Ribosomal protein S20 DSM104440_03243 PF03023 Lipid II flippase MurJ DSM104440_03244 PF06574 FAD synthetase DSM104440_03244 PF01687 Riboflavin kinase DSM104440_03245 PF00133 tRNA synthetases class I (I, L, M and V) DSM104440_03245 PF06827 Zinc finger found in FPG and IleRS DSM104440_03245 PF08264 Anticodon-binding domain of tRNA DSM104440_03246 PF01252 Signal peptidase (SPase) II DSM104440_03247 PF02401 LytB protein DSM104440_03249 PF05567 Neisseria PilC beta-propeller domain DSM104440_03254 PF07963 Prokaryotic N-terminal methylation motif DSM104440_03254 PF00114 Pilin (bacterial filament) DSM104440_03256 PF00585 C-terminal regulatory domain of Threonine dehydratase DSM104440_03256 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_03257 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DSM104440_03258 PF01895 PhoU domain DSM104440_03260 PF04362 Bacterial Fe(2+) trafficking DSM104440_03261 PF00583 Acetyltransferase (GNAT) family DSM104440_03261 PF00696 Amino acid kinase family DSM104440_03262 PF04452 RNA methyltransferase DSM104440_03263 PF03994 Domain of Unknown Function (DUF350) DSM104440_03264 PF03738 Glutathionylspermidine synthase preATP-grasp DSM104440_03266 PF17284 Spermidine synthase tetramerisation domain DSM104440_03267 PF02675 S-adenosylmethionine decarboxylase DSM104440_03268 PF02780 Transketolase, C-terminal domain DSM104440_03268 PF00456 Transketolase, thiamine diphosphate binding domain DSM104440_03268 PF02779 Transketolase, pyrimidine binding domain DSM104440_03270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DSM104440_03270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DSM104440_03271 PF00893 Small Multidrug Resistance protein DSM104440_03273 PF00162 Phosphoglycerate kinase DSM104440_03274 PF00224 Pyruvate kinase, barrel domain DSM104440_03274 PF02887 Pyruvate kinase, alpha/beta domain DSM104440_03276 PF01116 Fructose-bisphosphate aldolase class-II DSM104440_03277 PF01259 SAICAR synthetase DSM104440_03278 PF01546 Peptidase family M20/M25/M40 DSM104440_03278 PF07687 Peptidase dimerisation domain DSM104440_03280 PF01925 Sulfite exporter TauE/SafE DSM104440_03284 PF07715 TonB-dependent Receptor Plug Domain DSM104440_03284 PF00593 TonB dependent receptor DSM104440_03285 PF04989 Cephalosporin hydroxylase DSM104440_03290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104440_03291 PF00534 Glycosyl transferases group 1 DSM104440_03291 PF13439 Glycosyltransferase Family 4 DSM104440_03292 PF00005 ABC transporter DSM104440_03292 PF00664 ABC transporter transmembrane region DSM104440_03293 PF13439 Glycosyltransferase Family 4 DSM104440_03293 PF00534 Glycosyl transferases group 1 DSM104440_03294 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104440_03301 PF00005 ABC transporter DSM104440_03302 PF01061 ABC-2 type transporter DSM104440_03306 PF00263 Bacterial type II and III secretion system protein DSM104440_03306 PF03958 Bacterial type II/III secretion system short domain DSM104440_03309 PF05137 Fimbrial assembly protein (PilN) DSM104440_03310 PF03934 Type II secretion system (T2SS), protein K DSM104440_03311 PF11612 Type II secretion system (T2SS), protein J DSM104440_03311 PF07963 Prokaryotic N-terminal methylation motif DSM104440_03312 PF07963 Prokaryotic N-terminal methylation motif DSM104440_03313 PF12019 Type II transport protein GspH DSM104440_03314 PF07963 Prokaryotic N-terminal methylation motif DSM104440_03314 PF08334 Type II secretion system (T2SS), protein G DSM104440_03315 PF00482 Type II secretion system (T2SS), protein F DSM104440_03316 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104440_03316 PF00437 Type II/IV secretion system protein DSM104440_03317 PF00483 Nucleotidyl transferase DSM104440_03317 PF01050 Mannose-6-phosphate isomerase DSM104440_03319 PF01370 NAD dependent epimerase/dehydratase family DSM104440_03320 PF16363 GDP-mannose 4,6 dehydratase DSM104440_03321 PF16363 GDP-mannose 4,6 dehydratase DSM104440_03323 PF00005 ABC transporter DSM104440_03329 PF00535 Glycosyl transferase family 2 DSM104440_03330 PF00535 Glycosyl transferase family 2 DSM104440_03331 PF00733 Asparagine synthase DSM104440_03331 PF13537 Glutamine amidotransferase domain DSM104440_03332 PF13847 Methyltransferase domain DSM104440_03332 PF03551 Transcriptional regulator PadR-like family DSM104440_03333 PF01209 ubiE/COQ5 methyltransferase family DSM104440_03334 PF00892 EamA-like transporter family DSM104440_03338 PF03062 MBOAT, membrane-bound O-acyltransferase family DSM104440_03341 PF00483 Nucleotidyl transferase DSM104440_03342 PF16363 GDP-mannose 4,6 dehydratase DSM104440_03347 PF01370 NAD dependent epimerase/dehydratase family DSM104440_03348 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DSM104440_03349 PF00535 Glycosyl transferase family 2 DSM104440_03350 PF08241 Methyltransferase domain DSM104440_03351 PF08484 C-methyltransferase C-terminal domain DSM104440_03351 PF08421 Putative zinc binding domain DSM104440_03366 PF00535 Glycosyl transferase family 2 DSM104440_03369 PF17103 Stealth protein CR4, conserved region 4 DSM104440_03369 PF17102 Stealth protein CR3, conserved region 3 DSM104440_03369 PF17101 Stealth protein CR1, conserved region 1 DSM104440_03369 PF00534 Glycosyl transferases group 1 DSM104440_03369 PF11380 Stealth protein CR2, conserved region 2 DSM104440_03371 PF00909 Ammonium Transporter Family DSM104440_03372 PF00543 Nitrogen regulatory protein P-II DSM104440_03374 PF04380 Membrane fusogenic activity DSM104440_03376 PF01078 Magnesium chelatase, subunit ChlI DSM104440_03376 PF13335 Magnesium chelatase, subunit ChlI C-terminal DSM104440_03377 PF16658 Class II release factor RF3, C-terminal domain DSM104440_03377 PF00009 Elongation factor Tu GTP binding domain DSM104440_03377 PF03144 Elongation factor Tu domain 2 DSM104440_03378 PF01289 Thiol-activated cytolysin DSM104440_03378 PF17440 Thiol-activated cytolysin beta sandwich domain DSM104440_03380 PF07690 Major Facilitator Superfamily DSM104440_03381 PF07690 Major Facilitator Superfamily DSM104440_03383 PF01546 Peptidase family M20/M25/M40 DSM104440_03383 PF07687 Peptidase dimerisation domain DSM104440_03384 PF00378 Enoyl-CoA hydratase/isomerase DSM104440_03385 PF05995 Cysteine dioxygenase type I DSM104440_03386 PF02515 CoA-transferase family III DSM104440_03389 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104440_03389 PF00529 HlyD membrane-fusion protein of T1SS DSM104440_03390 PF00873 AcrB/AcrD/AcrF family DSM104440_03392 PF02310 B12 binding domain DSM104440_03392 PF02574 Homocysteine S-methyltransferase DSM104440_03392 PF00809 Pterin binding enzyme DSM104440_03392 PF02607 B12 binding domain DSM104440_03392 PF02965 Vitamin B12 dependent methionine synthase, activation domain DSM104440_03394 PF00563 EAL domain DSM104440_03394 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_03394 PF03707 Bacterial signalling protein N terminal repeat DSM104440_03397 PF02798 Glutathione S-transferase, N-terminal domain DSM104440_03397 PF00043 Glutathione S-transferase, C-terminal domain DSM104440_03398 PF10605 3HB-oligomer hydrolase (3HBOH) DSM104440_03403 PF02779 Transketolase, pyrimidine binding domain DSM104440_03403 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DSM104440_03403 PF02780 Transketolase, C-terminal domain DSM104440_03404 PF00348 Polyprenyl synthetase DSM104440_03405 PF02609 Exonuclease VII small subunit DSM104440_03406 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_03408 PF00072 Response regulator receiver domain DSM104440_03408 PF00196 Bacterial regulatory proteins, luxR family DSM104440_03412 PF07690 Major Facilitator Superfamily DSM104440_03414 PF00263 Bacterial type II and III secretion system protein DSM104440_03414 PF03958 Bacterial type II/III secretion system short domain DSM104440_03420 PF03144 Elongation factor Tu domain 2 DSM104440_03420 PF00009 Elongation factor Tu GTP binding domain DSM104440_03420 PF14492 Elongation Factor G, domain II DSM104440_03420 PF00679 Elongation factor G C-terminus DSM104440_03420 PF03764 Elongation factor G, domain IV DSM104440_03426 PF00664 ABC transporter transmembrane region DSM104440_03426 PF03412 Peptidase C39 family DSM104440_03426 PF00005 ABC transporter DSM104440_03430 PF02638 Glycosyl hydrolase-like 10 DSM104440_03433 PF00581 Rhodanese-like domain DSM104440_03434 PF00326 Prolyl oligopeptidase family DSM104440_03436 PF00072 Response regulator receiver domain DSM104440_03436 PF00486 Transcriptional regulatory protein, C terminal DSM104440_03437 PF02660 Glycerol-3-phosphate acyltransferase DSM104440_03438 PF02152 Dihydroneopterin aldolase DSM104440_03440 PF04073 Aminoacyl-tRNA editing domain DSM104440_03442 PF00589 Phage integrase family DSM104440_03442 PF02899 Phage integrase, N-terminal SAM-like domain DSM104440_03443 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DSM104440_03443 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DSM104440_03444 PF02615 Malate/L-lactate dehydrogenase DSM104440_03445 PF00890 FAD binding domain DSM104440_03445 PF02910 Fumarate reductase flavoprotein C-term DSM104440_03448 PF02472 Biopolymer transport protein ExbD/TolR DSM104440_03449 PF02472 Biopolymer transport protein ExbD/TolR DSM104440_03450 PF01618 MotA/TolQ/ExbB proton channel family DSM104440_03451 PF03544 Gram-negative bacterial TonB protein C-terminal DSM104440_03452 PF05683 Fumarase C-terminus DSM104440_03453 PF05681 Fumarate hydratase (Fumerase) DSM104440_03454 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03457 PF13183 4Fe-4S dicluster domain DSM104440_03457 PF13085 2Fe-2S iron-sulfur cluster binding domain DSM104440_03458 PF03601 Conserved hypothetical protein 698 DSM104440_03459 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DSM104440_03461 PF00392 Bacterial regulatory proteins, gntR family DSM104440_03463 PF04228 Putative neutral zinc metallopeptidase DSM104440_03464 PF01245 Ribosomal protein L19 DSM104440_03465 PF01746 tRNA (Guanine-1)-methyltransferase DSM104440_03466 PF05239 PRC-barrel domain DSM104440_03466 PF01782 RimM N-terminal domain DSM104440_03467 PF00886 Ribosomal protein S16 DSM104440_03468 PF07687 Peptidase dimerisation domain DSM104440_03468 PF01546 Peptidase family M20/M25/M40 DSM104440_03470 PF02881 SRP54-type protein, helical bundle domain DSM104440_03470 PF00448 SRP54-type protein, GTPase domain DSM104440_03470 PF02978 Signal peptide binding domain DSM104440_03472 PF00571 CBS domain DSM104440_03472 PF03471 Transporter associated domain DSM104440_03472 PF01595 Cyclin M transmembrane N-terminal domain DSM104440_03478 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_03478 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104440_03479 PF00484 Carbonic anhydrase DSM104440_03482 PF03301 Tryptophan 2,3-dioxygenase DSM104440_03484 PF03976 Polyphosphate kinase 2 (PPK2) DSM104440_03487 PF00691 OmpA family DSM104440_03487 PF05736 OprF membrane domain DSM104440_03488 PF07228 Stage II sporulation protein E (SpoIIE) DSM104440_03488 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DSM104440_03489 PF00753 Metallo-beta-lactamase superfamily DSM104440_03489 PF12706 Beta-lactamase superfamily domain DSM104440_03490 PF01740 STAS domain DSM104440_03491 PF00072 Response regulator receiver domain DSM104440_03491 PF00486 Transcriptional regulatory protein, C terminal DSM104440_03492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03492 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_03492 PF00672 HAMP domain DSM104440_03493 PF07715 TonB-dependent Receptor Plug Domain DSM104440_03493 PF00593 TonB dependent receptor DSM104440_03496 PF00356 Bacterial regulatory proteins, lacI family DSM104440_03497 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03498 PF00920 Dehydratase family DSM104440_03499 PF08450 SMP-30/Gluconolactonase/LRE-like region DSM104440_03500 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104440_03501 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03502 PF01061 ABC-2 type transporter DSM104440_03503 PF00005 ABC transporter DSM104440_03504 PF00571 CBS domain DSM104440_03505 PF01734 Patatin-like phospholipase DSM104440_03509 PF00381 PTS HPr component phosphorylation site DSM104440_03511 PF00248 Aldo/keto reductase family DSM104440_03512 PF06965 Na+/H+ antiporter 1 DSM104440_03514 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03517 PF13411 MerR HTH family regulatory protein DSM104440_03522 PF00005 ABC transporter DSM104440_03527 PF05139 Erythromycin esterase DSM104440_03540 PF00942 Cellulose binding domain DSM104440_03540 PF03442 Carbohydrate binding domain X2 DSM104440_03553 PF00118 TCP-1/cpn60 chaperonin family DSM104440_03554 PF00166 Chaperonin 10 Kd subunit DSM104440_03559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03559 PF00989 PAS fold DSM104440_03559 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_03561 PF04972 BON domain DSM104440_03567 PF00849 RNA pseudouridylate synthase DSM104440_03570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DSM104440_03570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DSM104440_03572 PF01979 Amidohydrolase family DSM104440_03573 PF01380 SIS domain DSM104440_03574 PF07702 UTRA domain DSM104440_03574 PF00392 Bacterial regulatory proteins, gntR family DSM104440_03576 PF07691 PA14 domain DSM104440_03576 PF00728 Glycosyl hydrolase family 20, catalytic domain DSM104440_03576 PF02838 Glycosyl hydrolase family 20, domain 2 DSM104440_03577 PF00381 PTS HPr component phosphorylation site DSM104440_03577 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104440_03577 PF05524 PEP-utilising enzyme, N-terminal DSM104440_03577 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DSM104440_03577 PF00391 PEP-utilising enzyme, mobile domain DSM104440_03578 PF00367 phosphotransferase system, EIIB DSM104440_03578 PF02378 Phosphotransferase system, EIIC DSM104440_03578 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DSM104440_03579 PF13396 Phospholipase_D-nuclease N-terminal DSM104440_03579 PF13091 PLD-like domain DSM104440_03582 PF00202 Aminotransferase class-III DSM104440_03583 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DSM104440_03588 PF08281 Sigma-70, region 4 DSM104440_03588 PF04542 Sigma-70 region 2 DSM104440_03589 PF03795 YCII-related domain DSM104440_03592 PF02735 Ku70/Ku80 beta-barrel domain DSM104440_03594 PF04679 ATP dependent DNA ligase C terminal region DSM104440_03594 PF13298 DNA polymerase Ligase (LigD) DSM104440_03594 PF01068 ATP dependent DNA ligase domain DSM104440_03598 PF05694 56kDa selenium binding protein (SBP56) DSM104440_03600 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104440_03600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104440_03600 PF18158 Adaptive response protein AidB N-terminal domain DSM104440_03601 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_03602 PF03073 TspO/MBR family DSM104440_03603 PF01170 Putative RNA methylase family UPF0020 DSM104440_03603 PF02926 THUMP domain DSM104440_03605 PF03653 Uncharacterised protein family (UPF0093) DSM104440_03606 PF11412 Disulphide bond corrector protein DsbC DSM104440_03606 PF02683 Cytochrome C biogenesis protein transmembrane region DSM104440_03606 PF13098 Thioredoxin-like domain DSM104440_03607 PF00578 AhpC/TSA family DSM104440_03613 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DSM104440_03616 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_03617 PF00072 Response regulator receiver domain DSM104440_03617 PF04397 LytTr DNA-binding domain DSM104440_03618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03618 PF00672 HAMP domain DSM104440_03618 PF06580 Histidine kinase DSM104440_03618 PF02743 Cache domain DSM104440_03620 PF00072 Response regulator receiver domain DSM104440_03620 PF04397 LytTr DNA-binding domain DSM104440_03621 PF07694 5TMR of 5TMR-LYT DSM104440_03621 PF06580 Histidine kinase DSM104440_03621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03621 PF13492 GAF domain DSM104440_03628 PF08402 TOBE domain DSM104440_03628 PF00005 ABC transporter DSM104440_03629 PF13416 Bacterial extracellular solute-binding protein DSM104440_03630 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_03631 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_03632 PF00905 Penicillin binding protein transpeptidase domain DSM104440_03634 PF01596 O-methyltransferase DSM104440_03635 PF00106 short chain dehydrogenase DSM104440_03636 PF03109 ABC1 family DSM104440_03639 PF00069 Protein kinase domain DSM104440_03641 PF07690 Major Facilitator Superfamily DSM104440_03644 PF16701 Adenylate cyclase regulatory domain DSM104440_03644 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_03645 PF01625 Peptide methionine sulfoxide reductase DSM104440_03646 PF00317 Ribonucleotide reductase, all-alpha domain DSM104440_03646 PF03477 ATP cone domain DSM104440_03646 PF02867 Ribonucleotide reductase, barrel domain DSM104440_03647 PF03401 Tripartite tricarboxylate transporter family receptor DSM104440_03648 PF00291 Pyridoxal-phosphate dependent enzyme DSM104440_03648 PF00571 CBS domain DSM104440_03652 PF01209 ubiE/COQ5 methyltransferase family DSM104440_03654 PF00486 Transcriptional regulatory protein, C terminal DSM104440_03654 PF00072 Response regulator receiver domain DSM104440_03655 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03655 PF11808 Phosphate regulon sensor protein PhoR DSM104440_03655 PF00989 PAS fold DSM104440_03657 PF00381 PTS HPr component phosphorylation site DSM104440_03658 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104440_03658 PF00391 PEP-utilising enzyme, mobile domain DSM104440_03658 PF05524 PEP-utilising enzyme, N-terminal DSM104440_03660 PF11737 Protein of unknown function (DUF3300) DSM104440_03661 PF00561 alpha/beta hydrolase fold DSM104440_03662 PF07021 Methionine biosynthesis protein MetW DSM104440_03662 PF00561 alpha/beta hydrolase fold DSM104440_03663 PF03976 Polyphosphate kinase 2 (PPK2) DSM104440_03664 PF07690 Major Facilitator Superfamily DSM104440_03665 PF01641 SelR domain DSM104440_03667 PF00005 ABC transporter DSM104440_03667 PF12848 ABC transporter DSM104440_03668 PF03372 Endonuclease/Exonuclease/phosphatase family DSM104440_03669 PF00156 Phosphoribosyl transferase domain DSM104440_03671 PF02637 GatB domain DSM104440_03671 PF02934 GatB/GatE catalytic domain DSM104440_03672 PF01425 Amidase DSM104440_03673 PF02686 Glu-tRNAGln amidotransferase C subunit DSM104440_03675 PF04085 rod shape-determining protein MreC DSM104440_03676 PF04093 rod shape-determining protein MreD DSM104440_03677 PF00905 Penicillin binding protein transpeptidase domain DSM104440_03677 PF03717 Penicillin-binding Protein dimerisation domain DSM104440_03678 PF01098 Cell cycle protein DSM104440_03679 PF03330 Lytic transglycolase DSM104440_03679 PF05036 Sporulation related domain DSM104440_03680 PF07943 Penicillin-binding protein 5, C-terminal domain DSM104440_03680 PF00768 D-alanyl-D-alanine carboxypeptidase DSM104440_03681 PF01063 Amino-transferase class IV DSM104440_03682 PF04359 Protein of unknown function (DUF493) DSM104440_03683 PF03099 Biotin/lipoate A/B protein ligase family DSM104440_03684 PF04055 Radical SAM superfamily DSM104440_03684 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DSM104440_03688 PF01274 Malate synthase DSM104440_03690 PF02558 Ketopantoate reductase PanE/ApbA DSM104440_03690 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104440_03691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104440_03691 PF03466 LysR substrate binding domain DSM104440_03693 PF00072 Response regulator receiver domain DSM104440_03693 PF04397 LytTr DNA-binding domain DSM104440_03694 PF06580 Histidine kinase DSM104440_03694 PF07694 5TMR of 5TMR-LYT DSM104440_03694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03695 PF14698 Argininosuccinate lyase C-terminal DSM104440_03695 PF00206 Lyase DSM104440_03697 PF01491 Frataxin-like domain DSM104440_03698 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DSM104440_03698 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DSM104440_03701 PF01769 Divalent cation transporter DSM104440_03701 PF00571 CBS domain DSM104440_03701 PF03448 MgtE intracellular N domain DSM104440_03702 PF00912 Transglycosylase DSM104440_03703 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DSM104440_03703 PF08501 Shikimate dehydrogenase substrate binding domain DSM104440_03703 PF01488 Shikimate / quinate 5-dehydrogenase DSM104440_03704 PF00120 Glutamine synthetase, catalytic domain DSM104440_03704 PF03951 Glutamine synthetase, beta-Grasp domain DSM104440_03706 PF00989 PAS fold DSM104440_03706 PF00512 His Kinase A (phospho-acceptor) domain DSM104440_03706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104440_03707 PF02954 Bacterial regulatory protein, Fis family DSM104440_03707 PF00072 Response regulator receiver domain DSM104440_03707 PF00158 Sigma-54 interaction domain DSM104440_03708 PF03707 Bacterial signalling protein N terminal repeat DSM104440_03708 PF00563 EAL domain DSM104440_03708 PF00990 Diguanylate cyclase, GGDEF domain DSM104440_03711 PF01432 Peptidase family M3 DSM104440_03712 PF01979 Amidohydrolase family DSM104440_03713 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DSM104440_03713 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DSM104440_03714 PF00156 Phosphoribosyl transferase domain DSM104440_03715 PF03652 Holliday junction resolvase DSM104440_03716 PF02622 Uncharacterized ACR, COG1678 DSM104440_03718 PF00326 Prolyl oligopeptidase family DSM104440_03721 PF05728 Uncharacterised protein family (UPF0227) DSM104440_03722 PF02567 Phenazine biosynthesis-like protein DSM104440_03723 PF08245 Mur ligase middle domain DSM104440_03723 PF02875 Mur ligase family, glutamate ligase domain DSM104440_03723 PF01225 Mur ligase family, catalytic domain DSM104440_03726 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DSM104440_03726 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DSM104440_03730 PF09335 SNARE associated Golgi protein DSM104440_03731 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DSM104440_03731 PF03900 Porphobilinogen deaminase, C-terminal domain DSM104440_03732 PF02602 Uroporphyrinogen-III synthase HemD DSM104440_03736 PF00175 Oxidoreductase NAD-binding domain DSM104440_03736 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104440_03736 PF00970 Oxidoreductase FAD-binding domain DSM104440_03739 PF00578 AhpC/TSA family DSM104440_03740 PF01220 Dehydroquinase class II DSM104440_03741 PF00364 Biotin-requiring enzyme DSM104440_03742 PF02785 Biotin carboxylase C-terminal domain DSM104440_03742 PF00289 Biotin carboxylase, N-terminal domain DSM104440_03742 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104440_03746 PF00294 pfkB family carbohydrate kinase DSM104440_03749 PF01553 Acyltransferase DSM104440_03750 PF00149 Calcineurin-like phosphoesterase DSM104440_03751 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DSM104440_03754 PF02719 Polysaccharide biosynthesis protein DSM104440_03755 PF00953 Glycosyl transferase family 4 DSM104440_03759 PF00310 Glutamine amidotransferases class-II DSM104440_03759 PF04898 Glutamate synthase central domain DSM104440_03759 PF01645 Conserved region in glutamate synthase DSM104440_03759 PF01493 GXGXG motif DSM104440_03760 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104440_03760 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DSM104440_03762 PF01208 Uroporphyrinogen decarboxylase (URO-D) DSM104440_03763 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DSM104440_03763 PF00270 DEAD/DEAH box helicase DSM104440_03763 PF00271 Helicase conserved C-terminal domain DSM104440_03763 PF18074 Primosomal protein N C-terminal domain DSM104440_03763 PF17764 3′ DNA-binding domain (3′BD) DSM104440_03765 PF05746 DALR anticodon binding domain DSM104440_03765 PF00750 tRNA synthetases class I (R) DSM104440_03765 PF03485 Arginyl tRNA synthetase N terminal domain DSM104440_03767 PF13462 Thioredoxin DSM104440_03768 PF00106 short chain dehydrogenase DSM104440_03769 PF00528 Binding-protein-dependent transport system inner membrane component DSM104440_03770 PF00005 ABC transporter DSM104440_03773 PF00682 HMGL-like DSM104440_03774 PF00311 Phosphoenolpyruvate carboxylase DSM104440_03776 PF02515 CoA-transferase family III DSM104440_03777 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104440_03779 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104440_03780 PF07690 Major Facilitator Superfamily DSM104440_03784 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DSM104440_03786 PF13291 ACT domain DSM104440_03786 PF02824 TGS domain DSM104440_03786 PF04607 Region found in RelA / SpoT proteins DSM104440_03787 PF04239 Protein of unknown function (DUF421) DSM104440_03788 PF01380 SIS domain DSM104440_03792 PF00672 HAMP domain DSM104440_03792 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104440_03792 PF02743 Cache domain DSM104440_03793 PF00027 Cyclic nucleotide-binding domain DSM104440_03793 PF13545 Crp-like helix-turn-helix domain DSM104440_03794 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104440_03794 PF12804 MobA-like NTP transferase domain DSM104440_03795 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DSM104440_03795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DSM104440_03796 PF02874 ATP synthase alpha/beta family, beta-barrel domain DSM104440_03796 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104440_03797 PF00231 ATP synthase DSM104440_03798 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104440_03798 PF02874 ATP synthase alpha/beta family, beta-barrel domain DSM104440_03798 PF00306 ATP synthase alpha/beta chain, C terminal domain DSM104440_03799 PF00213 ATP synthase delta (OSCP) subunit DSM104440_03800 PF00430 ATP synthase B/B' CF(0) DSM104440_03801 PF00137 ATP synthase subunit C DSM104440_03802 PF00119 ATP synthase A chain DSM104440_03804 PF17762 HTH domain found in ParB protein DSM104440_03804 PF02195 ParB-like nuclease domain DSM104440_03805 PF13614 AAA domain DSM104440_03806 PF02527 rRNA small subunit methyltransferase G DSM104440_03807 PF01134 Glucose inhibited division protein A DSM104440_03807 PF13932 GidA associated domain DSM104440_03810 PF10396 GTP-binding protein TrmE N-terminus DSM104440_03810 PF01926 50S ribosome-binding GTPase DSM104440_03810 PF12631 MnmE helical domain DSM104440_03811 PF14849 YidC periplasmic domain DSM104440_03811 PF02096 60Kd inner membrane protein DSM104440_03812 PF01809 Putative membrane protein insertion efficiency factor DSM104440_03813 PF00825 Ribonuclease P DSM104440_03814 PF00468 Ribosomal protein L34