locus-tag class description DSM104443_00001 PF11638 DnaA N-terminal domain DSM104443_00001 PF08299 Bacterial dnaA protein helix-turn-helix DSM104443_00001 PF00308 Bacterial dnaA protein DSM104443_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain DSM104443_00002 PF02767 DNA polymerase III beta subunit, central domain DSM104443_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain DSM104443_00003 PF01751 Toprim domain DSM104443_00003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00003 PF18053 DNA gyrase B subunit insert domain DSM104443_00003 PF00204 DNA gyrase B DSM104443_00003 PF00986 DNA gyrase B subunit, carboxyl terminus DSM104443_00005 PF01965 DJ-1/PfpI family DSM104443_00005 PF12833 Helix-turn-helix domain DSM104443_00007 PF13368 Topoisomerase C-terminal repeat DSM104443_00007 PF01751 Toprim domain DSM104443_00007 PF01131 DNA topoisomerase DSM104443_00008 PF17782 DprA winged helix domain DSM104443_00008 PF02481 DNA recombination-mediator protein A DSM104443_00010 PF01327 Polypeptide deformylase DSM104443_00011 PF02911 Formyl transferase, C-terminal domain DSM104443_00011 PF00551 Formyl transferase DSM104443_00013 PF00989 PAS fold DSM104443_00013 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00013 PF00672 HAMP domain DSM104443_00014 PF02954 Bacterial regulatory protein, Fis family DSM104443_00014 PF00072 Response regulator receiver domain DSM104443_00014 PF00158 Sigma-54 interaction domain DSM104443_00017 PF00005 ABC transporter DSM104443_00017 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_00018 PF00005 ABC transporter DSM104443_00018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_00019 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_00019 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00020 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00021 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_00023 PF01761 3-dehydroquinate synthase DSM104443_00024 PF01202 Shikimate kinase DSM104443_00025 PF11741 AMIN domain DSM104443_00025 PF07660 Secretin and TonB N terminus short domain DSM104443_00025 PF00263 Bacterial type II and III secretion system protein DSM104443_00025 PF03958 Bacterial type II/III secretion system short domain DSM104443_00026 PF04351 Pilus assembly protein, PilP DSM104443_00027 PF04350 Pilus assembly protein, PilO DSM104443_00028 PF05137 Fimbrial assembly protein (PilN) DSM104443_00029 PF11104 Type IV pilus assembly protein PilM; DSM104443_00030 PF17092 Penicillin-binding protein OB-like domain DSM104443_00030 PF00905 Penicillin binding protein transpeptidase domain DSM104443_00030 PF00912 Transglycosylase DSM104443_00032 PF00490 Delta-aminolevulinic acid dehydratase DSM104443_00033 PF01926 50S ribosome-binding GTPase DSM104443_00035 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00035 PF03707 Bacterial signalling protein N terminal repeat DSM104443_00035 PF00563 EAL domain DSM104443_00036 PF00202 Aminotransferase class-III DSM104443_00037 PF02581 Thiamine monophosphate synthase DSM104443_00038 PF08543 Phosphomethylpyrimidine kinase DSM104443_00039 PF00301 Rubredoxin DSM104443_00040 PF00072 Response regulator receiver domain DSM104443_00041 PF00072 Response regulator receiver domain DSM104443_00043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_00043 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DSM104443_00044 PF00072 Response regulator receiver domain DSM104443_00044 PF01627 Hpt domain DSM104443_00044 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00044 PF02895 Signal transducing histidine kinase, homodimeric domain DSM104443_00044 PF01584 CheW-like domain DSM104443_00046 PF00561 alpha/beta hydrolase fold DSM104443_00047 PF02673 Bacitracin resistance protein BacA DSM104443_00049 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00049 PF17151 Periplasmic sensor domain DSM104443_00050 PF13667 ThiC-associated domain DSM104443_00050 PF01964 Radical SAM ThiC family DSM104443_00052 PF13533 Biotin-lipoyl like DSM104443_00053 PF00005 ABC transporter DSM104443_00056 PF02321 Outer membrane efflux protein DSM104443_00057 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DSM104443_00057 PF00534 Glycosyl transferases group 1 DSM104443_00058 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104443_00059 PF00535 Glycosyl transferase family 2 DSM104443_00060 PF16363 GDP-mannose 4,6 dehydratase DSM104443_00061 PF00483 Nucleotidyl transferase DSM104443_00062 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DSM104443_00063 PF04321 RmlD substrate binding domain DSM104443_00066 PF02080 TrkA-C domain DSM104443_00066 PF00999 Sodium/hydrogen exchanger family DSM104443_00066 PF02254 TrkA-N domain DSM104443_00067 PF00571 CBS domain DSM104443_00067 PF01380 SIS domain DSM104443_00070 PF03968 OstA-like protein DSM104443_00071 PF00005 ABC transporter DSM104443_00072 PF04963 Sigma-54 factor, core binding domain DSM104443_00072 PF04552 Sigma-54, DNA binding domain DSM104443_00072 PF00309 Sigma-54 factor, Activator interacting domain (AID) DSM104443_00073 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DSM104443_00074 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DSM104443_00075 PF07475 HPr Serine kinase C-terminal domain DSM104443_00075 PF02603 HPr Serine kinase N terminus DSM104443_00076 PF03668 P-loop ATPase protein family DSM104443_00080 PF07694 5TMR of 5TMR-LYT DSM104443_00080 PF06580 Histidine kinase DSM104443_00081 PF00072 Response regulator receiver domain DSM104443_00081 PF04397 LytTr DNA-binding domain DSM104443_00082 PF02597 ThiS family DSM104443_00082 PF05690 Thiazole biosynthesis protein ThiG DSM104443_00083 PF05690 Thiazole biosynthesis protein ThiG DSM104443_00085 PF02390 Putative methyltransferase DSM104443_00087 PF04055 Radical SAM superfamily DSM104443_00087 PF06969 HemN C-terminal domain DSM104443_00088 PF01725 Ham1 family DSM104443_00089 PF03725 3' exoribonuclease family, domain 2 DSM104443_00089 PF01138 3' exoribonuclease family, domain 1 DSM104443_00091 PF00069 Protein kinase domain DSM104443_00091 PF03793 PASTA domain DSM104443_00092 PF08340 Domain of unknown function (DUF1732) DSM104443_00092 PF03755 YicC-like family, N-terminal region DSM104443_00093 PF00625 Guanylate kinase DSM104443_00094 PF01192 RNA polymerase Rpb6 DSM104443_00095 PF02824 TGS domain DSM104443_00095 PF04607 Region found in RelA / SpoT proteins DSM104443_00095 PF13291 ACT domain DSM104443_00096 PF01042 Endoribonuclease L-PSP DSM104443_00097 PF00270 DEAD/DEAH box helicase DSM104443_00097 PF00271 Helicase conserved C-terminal domain DSM104443_00097 PF17191 RecG wedge domain DSM104443_00098 PF04345 Chorismate lyase DSM104443_00100 PF01040 UbiA prenyltransferase family DSM104443_00101 PF02525 Flavodoxin-like fold DSM104443_00102 PF02254 TrkA-N domain DSM104443_00102 PF00999 Sodium/hydrogen exchanger family DSM104443_00103 PF00108 Thiolase, N-terminal domain DSM104443_00103 PF02803 Thiolase, C-terminal domain DSM104443_00108 PF00005 ABC transporter DSM104443_00108 PF13732 Domain of unknown function (DUF4162) DSM104443_00109 PF01740 STAS domain DSM104443_00109 PF00916 Sulfate permease family DSM104443_00110 PF00072 Response regulator receiver domain DSM104443_00110 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00111 PF00072 Response regulator receiver domain DSM104443_00111 PF13188 PAS domain DSM104443_00111 PF08448 PAS fold DSM104443_00111 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00113 PF00210 Ferritin-like domain DSM104443_00114 PF13545 Crp-like helix-turn-helix domain DSM104443_00114 PF00027 Cyclic nucleotide-binding domain DSM104443_00115 PF00437 Type II/IV secretion system protein DSM104443_00116 PF00437 Type II/IV secretion system protein DSM104443_00117 PF01168 Alanine racemase, N-terminal domain DSM104443_00118 PF03807 NADP oxidoreductase coenzyme F420-dependent DSM104443_00118 PF14748 Pyrroline-5-carboxylate reductase dimerisation DSM104443_00119 PF02325 YGGT family DSM104443_00122 PF13193 AMP-binding enzyme C-terminal domain DSM104443_00122 PF00501 AMP-binding enzyme DSM104443_00123 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_00123 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_00123 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_00124 PF01636 Phosphotransferase enzyme family DSM104443_00126 PF02803 Thiolase, C-terminal domain DSM104443_00126 PF00108 Thiolase, N-terminal domain DSM104443_00127 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_00127 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104443_00127 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104443_00128 PF00005 ABC transporter DSM104443_00129 PF00005 ABC transporter DSM104443_00131 PF02653 Branched-chain amino acid transport system / permease component DSM104443_00132 PF13458 Periplasmic binding protein DSM104443_00133 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_00133 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_00133 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_00134 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_00134 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_00134 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_00136 PF04029 2-phosphosulpholactate phosphatase DSM104443_00137 PF00107 Zinc-binding dehydrogenase DSM104443_00137 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_00138 PF09339 IclR helix-turn-helix domain DSM104443_00138 PF01614 Bacterial transcriptional regulator DSM104443_00141 PF10150 Ribonuclease E/G family DSM104443_00141 PF00575 S1 RNA binding domain DSM104443_00142 PF02545 Maf-like protein DSM104443_00143 PF02590 Predicted SPOUT methyltransferase DSM104443_00145 PF01467 Cytidylyltransferase-like DSM104443_00146 PF00171 Aldehyde dehydrogenase family DSM104443_00149 PF08264 Anticodon-binding domain of tRNA DSM104443_00149 PF00133 tRNA synthetases class I (I, L, M and V) DSM104443_00149 PF13603 Leucyl-tRNA synthetase, Domain 2 DSM104443_00149 PF09334 tRNA synthetases class I (M) DSM104443_00151 PF13361 UvrD-like helicase C-terminal domain DSM104443_00151 PF00580 UvrD/REP helicase N-terminal domain DSM104443_00153 PF01636 Phosphotransferase enzyme family DSM104443_00155 PF03641 Possible lysine decarboxylase DSM104443_00156 PF01367 5'-3' exonuclease, C-terminal SAM fold DSM104443_00156 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DSM104443_00156 PF01612 3'-5' exonuclease DSM104443_00156 PF00476 DNA polymerase family A DSM104443_00158 PF01300 Telomere recombination DSM104443_00158 PF03481 Putative GTP-binding controlling metal-binding DSM104443_00171 PF00069 Protein kinase domain DSM104443_00171 PF03793 PASTA domain DSM104443_00173 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_00175 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_00177 PF05378 Hydantoinase/oxoprolinase N-terminal region DSM104443_00177 PF01968 Hydantoinase/oxoprolinase DSM104443_00178 PF13458 Periplasmic binding protein DSM104443_00179 PF01207 Dihydrouridine synthase (Dus) DSM104443_00180 PF02954 Bacterial regulatory protein, Fis family DSM104443_00181 PF01808 AICARFT/IMPCHase bienzyme DSM104443_00181 PF02142 MGS-like domain DSM104443_00182 PF02843 Phosphoribosylglycinamide synthetase, C domain DSM104443_00182 PF02844 Phosphoribosylglycinamide synthetase, N domain DSM104443_00182 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DSM104443_00185 PF01218 Coproporphyrinogen III oxidase DSM104443_00190 PF00563 EAL domain DSM104443_00190 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00190 PF03707 Bacterial signalling protein N terminal repeat DSM104443_00191 PF00069 Protein kinase domain DSM104443_00191 PF03793 PASTA domain DSM104443_00192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00192 PF08447 PAS fold DSM104443_00192 PF08448 PAS fold DSM104443_00193 PF00005 ABC transporter DSM104443_00194 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_00194 PF00005 ABC transporter DSM104443_00195 PF02653 Branched-chain amino acid transport system / permease component DSM104443_00195 PF11862 Domain of unknown function (DUF3382) DSM104443_00197 PF02653 Branched-chain amino acid transport system / permease component DSM104443_00198 PF13458 Periplasmic binding protein DSM104443_00199 PF13458 Periplasmic binding protein DSM104443_00201 PF03190 Protein of unknown function, DUF255 DSM104443_00204 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DSM104443_00204 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DSM104443_00205 PF12833 Helix-turn-helix domain DSM104443_00205 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104443_00205 PF02805 Metal binding domain of Ada DSM104443_00205 PF06029 AlkA N-terminal domain DSM104443_00210 PF07690 Major Facilitator Superfamily DSM104443_00214 PF00248 Aldo/keto reductase family DSM104443_00218 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00221 PF00920 Dehydratase family DSM104443_00223 PF01790 Prolipoprotein diacylglyceryl transferase DSM104443_00224 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104443_00224 PF02558 Ketopantoate reductase PanE/ApbA DSM104443_00233 PF00196 Bacterial regulatory proteins, luxR family DSM104443_00233 PF00072 Response regulator receiver domain DSM104443_00235 PF07730 Histidine kinase DSM104443_00235 PF17200 Single Cache domain 2 DSM104443_00243 PF05532 CsbD-like DSM104443_00244 PF01594 AI-2E family transporter DSM104443_00246 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00246 PF00072 Response regulator receiver domain DSM104443_00247 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00247 PF00672 HAMP domain DSM104443_00248 PF03707 Bacterial signalling protein N terminal repeat DSM104443_00248 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00248 PF00563 EAL domain DSM104443_00251 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104443_00252 PF03881 Fructosamine kinase DSM104443_00254 PF13495 Phage integrase, N-terminal SAM-like domain DSM104443_00254 PF00589 Phage integrase family DSM104443_00277 PF00753 Metallo-beta-lactamase superfamily DSM104443_00283 PF05721 Phytanoyl-CoA dioxygenase (PhyH) DSM104443_00284 PF00583 Acetyltransferase (GNAT) family DSM104443_00294 PF00857 Isochorismatase family DSM104443_00306 PF07995 Glucose / Sorbosone dehydrogenase DSM104443_00307 PF00005 ABC transporter DSM104443_00308 PF01032 FecCD transport family DSM104443_00309 PF01497 Periplasmic binding protein DSM104443_00310 PF07689 KaiB domain DSM104443_00310 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00312 PF00593 TonB dependent receptor DSM104443_00312 PF07715 TonB-dependent Receptor Plug Domain DSM104443_00313 PF01841 Transglutaminase-like superfamily DSM104443_00315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_00315 PF00384 Molybdopterin oxidoreductase DSM104443_00315 PF01568 Molydopterin dinucleotide binding domain DSM104443_00316 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_00316 PF01568 Molydopterin dinucleotide binding domain DSM104443_00316 PF00384 Molybdopterin oxidoreductase DSM104443_00317 PF13247 4Fe-4S dicluster domain DSM104443_00317 PF09163 Formate dehydrogenase N, transmembrane DSM104443_00318 PF01292 Prokaryotic cytochrome b561 DSM104443_00319 PF04216 Protein involved in formate dehydrogenase formation DSM104443_00321 PF01597 Glycine cleavage H-protein DSM104443_00322 PF03841 L-seryl-tRNA selenium transferase DSM104443_00322 PF12390 Selenocysteine synthase N terminal DSM104443_00323 PF00009 Elongation factor Tu GTP binding domain DSM104443_00323 PF09107 Elongation factor SelB, winged helix DSM104443_00323 PF03144 Elongation factor Tu domain 2 DSM104443_00323 PF09106 Elongation factor SelB, winged helix DSM104443_00327 PF12849 PBP superfamily domain DSM104443_00328 PF00005 ABC transporter DSM104443_00329 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00330 PF00005 ABC transporter DSM104443_00330 PF03459 TOBE domain DSM104443_00331 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00333 PF03459 TOBE domain DSM104443_00333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_00334 PF00462 Glutaredoxin DSM104443_00335 PF12728 Helix-turn-helix domain DSM104443_00335 PF12727 PBP superfamily domain DSM104443_00337 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104443_00337 PF00037 4Fe-4S binding domain DSM104443_00337 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104443_00338 PF12838 4Fe-4S dicluster domain DSM104443_00338 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_00338 PF00384 Molybdopterin oxidoreductase DSM104443_00338 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104443_00338 PF01568 Molydopterin dinucleotide binding domain DSM104443_00339 PF02634 FdhD/NarQ family DSM104443_00341 PF05175 Methyltransferase small domain DSM104443_00341 PF17827 PrmC N-terminal domain DSM104443_00342 PF00472 RF-1 domain DSM104443_00342 PF03462 PCRF domain DSM104443_00343 PF01488 Shikimate / quinate 5-dehydrogenase DSM104443_00343 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DSM104443_00343 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DSM104443_00344 PF00255 Glutathione peroxidase DSM104443_00345 PF00437 Type II/IV secretion system protein DSM104443_00345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104443_00346 PF00482 Type II secretion system (T2SS), protein F DSM104443_00347 PF01478 Type IV leader peptidase family DSM104443_00347 PF06750 Bacterial Peptidase A24 N-terminal domain DSM104443_00348 PF01121 Dephospho-CoA kinase DSM104443_00349 PF07072 Cell division protein DSM104443_00350 PF03884 DNA gyrase inhibitor YacG DSM104443_00352 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DSM104443_00352 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DSM104443_00353 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104443_00355 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DSM104443_00357 PF00510 Cytochrome c oxidase subunit III DSM104443_00359 PF02104 SURF1 family DSM104443_00361 PF01040 UbiA prenyltransferase family DSM104443_00362 PF02630 SCO1/SenC DSM104443_00363 PF04545 Sigma-70, region 4 DSM104443_00363 PF04542 Sigma-70 region 2 DSM104443_00363 PF00140 Sigma-70 factor, region 1.2 DSM104443_00364 PF18075 FtsX extracellular domain DSM104443_00365 PF00005 ABC transporter DSM104443_00366 PF02881 SRP54-type protein, helical bundle domain DSM104443_00366 PF00448 SRP54-type protein, GTPase domain DSM104443_00368 PF01467 Cytidylyltransferase-like DSM104443_00369 PF00037 4Fe-4S binding domain DSM104443_00371 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DSM104443_00371 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DSM104443_00371 PF06827 Zinc finger found in FPG and IleRS DSM104443_00374 PF00288 GHMP kinases N terminal domain DSM104443_00374 PF08544 GHMP kinases C terminal DSM104443_00376 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DSM104443_00376 PF14572 Phosphoribosyl synthetase-associated domain DSM104443_00377 PF14693 Ribosomal protein TL5, C-terminal domain DSM104443_00377 PF01386 Ribosomal L25p family DSM104443_00378 PF01195 Peptidyl-tRNA hydrolase DSM104443_00379 PF06071 Protein of unknown function (DUF933) DSM104443_00379 PF01926 50S ribosome-binding GTPase DSM104443_00383 PF00691 OmpA family DSM104443_00383 PF05736 OprF membrane domain DSM104443_00385 PF00919 Uncharacterized protein family UPF0004 DSM104443_00385 PF04055 Radical SAM superfamily DSM104443_00385 PF01938 TRAM domain DSM104443_00387 PF02562 PhoH-like protein DSM104443_00388 PF02130 Uncharacterized protein family UPF0054 DSM104443_00389 PF03471 Transporter associated domain DSM104443_00389 PF00571 CBS domain DSM104443_00390 PF00795 Carbon-nitrogen hydrolase DSM104443_00392 PF02091 Glycyl-tRNA synthetase alpha subunit DSM104443_00393 PF02092 Glycyl-tRNA synthetase beta subunit DSM104443_00393 PF05746 DALR anticodon binding domain DSM104443_00397 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104443_00399 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104443_00399 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104443_00399 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_00400 PF00398 Ribosomal RNA adenine dimethylase DSM104443_00401 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DSM104443_00402 PF00639 PPIC-type PPIASE domain DSM104443_00402 PF09312 SurA N-terminal domain DSM104443_00403 PF04453 LPS transport system D DSM104443_00404 PF01636 Phosphotransferase enzyme family DSM104443_00405 PF00483 Nucleotidyl transferase DSM104443_00406 PF00557 Metallopeptidase family M24 DSM104443_00406 PF05195 Aminopeptidase P, N-terminal domain DSM104443_00407 PF01494 FAD binding domain DSM104443_00408 PF01494 FAD binding domain DSM104443_00409 PF13098 Thioredoxin-like domain DSM104443_00409 PF10411 Disulfide bond isomerase protein N-terminus DSM104443_00411 PF03562 MltA specific insert domain DSM104443_00411 PF06725 3D domain DSM104443_00412 PF04379 ApaG domain DSM104443_00413 PF00834 Ribulose-phosphate 3 epimerase family DSM104443_00414 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_00415 PF04715 Anthranilate synthase component I, N terminal region DSM104443_00415 PF00425 chorismate binding enzyme DSM104443_00416 PF00117 Glutamine amidotransferase class-I DSM104443_00417 PF02885 Glycosyl transferase family, helical bundle domain DSM104443_00417 PF00591 Glycosyl transferase family, a/b domain DSM104443_00418 PF00218 Indole-3-glycerol phosphate synthase DSM104443_00419 PF00267 Gram-negative porin DSM104443_00420 PF03232 Ubiquinone biosynthesis protein COQ7 DSM104443_00422 PF01594 AI-2E family transporter DSM104443_00423 PF00572 Ribosomal protein L13 DSM104443_00424 PF00380 Ribosomal protein S9/S16 DSM104443_00425 PF02774 Semialdehyde dehydrogenase, dimerisation domain DSM104443_00425 PF01118 Semialdehyde dehydrogenase, NAD binding domain DSM104443_00428 PF01521 Iron-sulphur cluster biosynthesis DSM104443_00429 PF03702 Anhydro-N-acetylmuramic acid kinase DSM104443_00430 PF01551 Peptidase family M23 DSM104443_00431 PF00579 tRNA synthetases class I (W and Y) DSM104443_00431 PF01479 S4 domain DSM104443_00437 PF08281 Sigma-70, region 4 DSM104443_00437 PF04542 Sigma-70 region 2 DSM104443_00438 PF03795 YCII-related domain DSM104443_00439 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_00444 PF01433 Peptidase family M1 domain DSM104443_00444 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DSM104443_00444 PF11940 Domain of unknown function (DUF3458) Ig-like fold DSM104443_00445 PF00271 Helicase conserved C-terminal domain DSM104443_00445 PF00270 DEAD/DEAH box helicase DSM104443_00447 PF01322 Cytochrome C' DSM104443_00449 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_00450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_00461 PF17760 UvrA interaction domain DSM104443_00461 PF17755 UvrA DNA-binding domain DSM104443_00461 PF00005 ABC transporter DSM104443_00463 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DSM104443_00463 PF01266 FAD dependent oxidoreductase DSM104443_00465 PF17804 Tail specific protease N-terminal domain DSM104443_00465 PF03572 Peptidase family S41 DSM104443_00465 PF00595 PDZ domain DSM104443_00465 PF11818 C-terminal domain of tail specific protease (DUF3340) DSM104443_00466 PF01557 Fumarylacetoacetate (FAA) hydrolase family DSM104443_00469 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00470 PF00753 Metallo-beta-lactamase superfamily DSM104443_00470 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104443_00472 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00474 PF08447 PAS fold DSM104443_00474 PF00563 EAL domain DSM104443_00474 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_00474 PF05231 MASE1 DSM104443_00474 PF08448 PAS fold DSM104443_00474 PF13426 PAS domain DSM104443_00475 PF00005 ABC transporter DSM104443_00477 PF00890 FAD binding domain DSM104443_00477 PF14537 Cytochrome c3 DSM104443_00479 PF00596 Class II Aldolase and Adducin N-terminal domain DSM104443_00480 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00481 PF02615 Malate/L-lactate dehydrogenase DSM104443_00482 PF08281 Sigma-70, region 4 DSM104443_00482 PF04542 Sigma-70 region 2 DSM104443_00484 PF01812 5-formyltetrahydrofolate cyclo-ligase family DSM104443_00485 PF00583 Acetyltransferase (GNAT) family DSM104443_00485 PF13607 Succinyl-CoA ligase like flavodoxin domain DSM104443_00485 PF13380 CoA binding domain DSM104443_00486 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00492 PF00155 Aminotransferase class I and II DSM104443_00492 PF00392 Bacterial regulatory proteins, gntR family DSM104443_00497 PF00106 short chain dehydrogenase DSM104443_00499 PF00202 Aminotransferase class-III DSM104443_00504 PF00005 ABC transporter DSM104443_00504 PF12848 ABC transporter DSM104443_00507 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DSM104443_00507 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DSM104443_00508 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00512 PF00920 Dehydratase family DSM104443_00513 PF02678 Pirin DSM104443_00513 PF05726 Pirin C-terminal cupin domain DSM104443_00514 PF01070 FMN-dependent dehydrogenase DSM104443_00516 PF00248 Aldo/keto reductase family DSM104443_00520 PF03793 PASTA domain DSM104443_00520 PF00069 Protein kinase domain DSM104443_00522 PF03631 Virulence factor BrkB DSM104443_00533 PF00890 FAD binding domain DSM104443_00533 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DSM104443_00534 PF00034 Cytochrome c DSM104443_00535 PF04397 LytTr DNA-binding domain DSM104443_00535 PF00072 Response regulator receiver domain DSM104443_00536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00536 PF07694 5TMR of 5TMR-LYT DSM104443_00536 PF06580 Histidine kinase DSM104443_00537 PF12833 Helix-turn-helix domain DSM104443_00550 PF00149 Calcineurin-like phosphoesterase DSM104443_00556 PF13649 Methyltransferase domain DSM104443_00557 PF01546 Peptidase family M20/M25/M40 DSM104443_00557 PF07687 Peptidase dimerisation domain DSM104443_00559 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00569 PF07715 TonB-dependent Receptor Plug Domain DSM104443_00569 PF00593 TonB dependent receptor DSM104443_00571 PF00873 AcrB/AcrD/AcrF family DSM104443_00572 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_00576 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00577 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104443_00578 PF00682 HMGL-like DSM104443_00578 PF07836 DmpG-like communication domain DSM104443_00579 PF00881 Nitroreductase family DSM104443_00582 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00583 PF00392 Bacterial regulatory proteins, gntR family DSM104443_00583 PF07702 UTRA domain DSM104443_00584 PF02515 CoA-transferase family III DSM104443_00586 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00586 PF00072 Response regulator receiver domain DSM104443_00589 PF02469 Fasciclin domain DSM104443_00590 PF02469 Fasciclin domain DSM104443_00592 PF02666 Phosphatidylserine decarboxylase DSM104443_00593 PF00313 'Cold-shock' DNA-binding domain DSM104443_00595 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00595 PF00072 Response regulator receiver domain DSM104443_00601 PF00072 Response regulator receiver domain DSM104443_00601 PF04397 LytTr DNA-binding domain DSM104443_00606 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104443_00606 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DSM104443_00614 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DSM104443_00614 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DSM104443_00616 PF00005 ABC transporter DSM104443_00619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00619 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00620 PF00072 Response regulator receiver domain DSM104443_00620 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00624 PF03009 Glycerophosphoryl diester phosphodiesterase family DSM104443_00625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DSM104443_00627 PF01471 Putative peptidoglycan binding domain DSM104443_00627 PF17820 PDZ domain DSM104443_00627 PF03572 Peptidase family S41 DSM104443_00631 PF03309 Type III pantothenate kinase DSM104443_00632 PF03099 Biotin/lipoate A/B protein ligase family DSM104443_00632 PF02237 Biotin protein ligase C terminal domain DSM104443_00632 PF08279 HTH domain DSM104443_00635 PF04107 Glutamate-cysteine ligase family 2(GCS2) DSM104443_00636 PF00909 Ammonium Transporter Family DSM104443_00636 PF00672 HAMP domain DSM104443_00639 PF02913 FAD linked oxidases, C-terminal domain DSM104443_00639 PF01565 FAD binding domain DSM104443_00640 PF01467 Cytidylyltransferase-like DSM104443_00642 PF01593 Flavin containing amine oxidoreductase DSM104443_00648 PF00106 short chain dehydrogenase DSM104443_00650 PF04972 BON domain DSM104443_00651 PF13580 SIS domain DSM104443_00652 PF02021 Uncharacterised protein family UPF0102 DSM104443_00654 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104443_00655 PF01979 Amidohydrolase family DSM104443_00657 PF01614 Bacterial transcriptional regulator DSM104443_00657 PF09339 IclR helix-turn-helix domain DSM104443_00659 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00660 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00661 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DSM104443_00661 PF13378 Enolase C-terminal domain-like DSM104443_00662 PF00701 Dihydrodipicolinate synthetase family DSM104443_00663 PF00005 ABC transporter DSM104443_00663 PF17912 MalK OB fold domain DSM104443_00664 PF05035 2-keto-3-deoxy-galactonokinase DSM104443_00665 PF01081 KDPG and KHG aldolase DSM104443_00668 PF02381 MraZ protein, putative antitoxin-like DSM104443_00670 PF01795 MraW methylase family DSM104443_00672 PF03717 Penicillin-binding Protein dimerisation domain DSM104443_00672 PF00905 Penicillin binding protein transpeptidase domain DSM104443_00673 PF08245 Mur ligase middle domain DSM104443_00673 PF02875 Mur ligase family, glutamate ligase domain DSM104443_00673 PF01225 Mur ligase family, catalytic domain DSM104443_00674 PF08245 Mur ligase middle domain DSM104443_00674 PF02875 Mur ligase family, glutamate ligase domain DSM104443_00674 PF01225 Mur ligase family, catalytic domain DSM104443_00675 PF00953 Glycosyl transferase family 4 DSM104443_00675 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DSM104443_00676 PF02875 Mur ligase family, glutamate ligase domain DSM104443_00676 PF08245 Mur ligase middle domain DSM104443_00677 PF01098 Cell cycle protein DSM104443_00678 PF04101 Glycosyltransferase family 28 C-terminal domain DSM104443_00678 PF03033 Glycosyltransferase family 28 N-terminal domain DSM104443_00679 PF01225 Mur ligase family, catalytic domain DSM104443_00679 PF08245 Mur ligase middle domain DSM104443_00679 PF02875 Mur ligase family, glutamate ligase domain DSM104443_00680 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DSM104443_00680 PF01565 FAD binding domain DSM104443_00681 PF07478 D-ala D-ala ligase C-terminus DSM104443_00681 PF01820 D-ala D-ala ligase N-terminus DSM104443_00682 PF08478 POTRA domain, FtsQ-type DSM104443_00682 PF03799 Cell division protein FtsQ DSM104443_00683 PF02491 SHS2 domain inserted in FTSA DSM104443_00684 PF00091 Tubulin/FtsZ family, GTPase domain DSM104443_00684 PF12327 FtsZ family, C-terminal domain DSM104443_00687 PF11737 Protein of unknown function (DUF3300) DSM104443_00690 PF01734 Patatin-like phospholipase DSM104443_00691 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DSM104443_00694 PF01551 Peptidase family M23 DSM104443_00695 PF02810 SEC-C motif DSM104443_00695 PF07517 SecA DEAD-like domain DSM104443_00695 PF07516 SecA Wing and Scaffold domain DSM104443_00695 PF01043 SecA preprotein cross-linking domain DSM104443_00696 PF01960 ArgJ family DSM104443_00700 PF00293 NUDIX domain DSM104443_00701 PF01979 Amidohydrolase family DSM104443_00702 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_00703 PF02560 Cyanate lyase C-terminal domain DSM104443_00704 PF00005 ABC transporter DSM104443_00705 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00707 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_00709 PF08241 Methyltransferase domain DSM104443_00710 PF00561 alpha/beta hydrolase fold DSM104443_00711 PF00155 Aminotransferase class I and II DSM104443_00712 PF06968 Biotin and Thiamin Synthesis associated domain DSM104443_00712 PF04055 Radical SAM superfamily DSM104443_00714 PF00588 SpoU rRNA Methylase family DSM104443_00715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DSM104443_00715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DSM104443_00717 PF02556 Preprotein translocase subunit SecB DSM104443_00718 PF00462 Glutaredoxin DSM104443_00719 PF00581 Rhodanese-like domain DSM104443_00722 PF00300 Histidine phosphatase superfamily (branch 1) DSM104443_00724 PF13180 PDZ domain DSM104443_00724 PF03572 Peptidase family S41 DSM104443_00725 PF00899 ThiF family DSM104443_00728 PF00814 Glycoprotease family DSM104443_00729 PF01165 Ribosomal protein S21 DSM104443_00731 PF08278 DNA primase DnaG DnaB-binding DSM104443_00731 PF01807 CHC2 zinc finger DSM104443_00731 PF10410 DnaB-helicase binding domain of primase DSM104443_00731 PF08275 DNA primase catalytic core, N-terminal domain DSM104443_00732 PF03979 Sigma-70 factor, region 1.1 DSM104443_00732 PF04545 Sigma-70, region 4 DSM104443_00732 PF04542 Sigma-70 region 2 DSM104443_00732 PF04546 Sigma-70, non-essential region DSM104443_00732 PF00140 Sigma-70 factor, region 1.2 DSM104443_00732 PF04539 Sigma-70 region 3 DSM104443_00739 PF13380 CoA binding domain DSM104443_00741 PF16200 C-terminal region of band_7 DSM104443_00741 PF01145 SPFH domain / Band 7 family DSM104443_00742 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104443_00743 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_00743 PF13417 Glutathione S-transferase, N-terminal domain DSM104443_00744 PF13411 MerR HTH family regulatory protein DSM104443_00748 PF09317 Domain of unknown function (DUF1974) DSM104443_00748 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_00748 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_00748 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_00749 PF02803 Thiolase, C-terminal domain DSM104443_00749 PF00108 Thiolase, N-terminal domain DSM104443_00751 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_00751 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104443_00751 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104443_00755 PF05987 Bacterial protein of unknown function (DUF898) DSM104443_00756 PF01435 Peptidase family M48 DSM104443_00757 PF00501 AMP-binding enzyme DSM104443_00758 PF00106 short chain dehydrogenase DSM104443_00759 PF00107 Zinc-binding dehydrogenase DSM104443_00759 PF16884 N-terminal domain of oxidoreductase DSM104443_00761 PF03061 Thioesterase superfamily DSM104443_00762 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DSM104443_00762 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_00762 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DSM104443_00764 PF02803 Thiolase, C-terminal domain DSM104443_00764 PF00108 Thiolase, N-terminal domain DSM104443_00766 PF07044 Protein of unknown function (DUF1329) DSM104443_00769 PF04241 Protein of unknown function (DUF423) DSM104443_00771 PF00082 Subtilase family DSM104443_00772 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_00772 PF03476 MOSC N-terminal beta barrel domain DSM104443_00772 PF03473 MOSC domain DSM104443_00773 PF13421 SPFH domain-Band 7 family DSM104443_00776 PF08534 Redoxin DSM104443_00777 PF01810 LysE type translocator DSM104443_00778 PF00106 short chain dehydrogenase DSM104443_00779 PF11798 IMS family HHH motif DSM104443_00779 PF00817 impB/mucB/samB family DSM104443_00779 PF11799 impB/mucB/samB family C-terminal domain DSM104443_00780 PF13185 GAF domain DSM104443_00782 PF00326 Prolyl oligopeptidase family DSM104443_00782 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104443_00790 PF00892 EamA-like transporter family DSM104443_00792 PF01268 Formate--tetrahydrofolate ligase DSM104443_00794 PF03793 PASTA domain DSM104443_00794 PF00069 Protein kinase domain DSM104443_00796 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104443_00796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00796 PF01627 Hpt domain DSM104443_00796 PF00072 Response regulator receiver domain DSM104443_00796 PF00672 HAMP domain DSM104443_00796 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_00797 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_00797 PF16736 Single Cache-like DSM104443_00797 PF00989 PAS fold DSM104443_00799 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00799 PF00072 Response regulator receiver domain DSM104443_00800 PF01565 FAD binding domain DSM104443_00800 PF02913 FAD linked oxidases, C-terminal domain DSM104443_00801 PF01565 FAD binding domain DSM104443_00801 PF02913 FAD linked oxidases, C-terminal domain DSM104443_00802 PF01565 FAD binding domain DSM104443_00803 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_00803 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_00804 PF02754 Cysteine-rich domain DSM104443_00804 PF13183 4Fe-4S dicluster domain DSM104443_00806 PF01197 Ribosomal protein L31 DSM104443_00807 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104443_00807 PF07498 Rho termination factor, N-terminal domain DSM104443_00807 PF07497 Rho termination factor, RNA-binding domain DSM104443_00808 PF00085 Thioredoxin DSM104443_00809 PF00037 4Fe-4S binding domain DSM104443_00809 PF11953 Domain of unknown function (DUF3470) DSM104443_00811 PF02322 Cytochrome bd terminal oxidase subunit II DSM104443_00812 PF01654 Cytochrome bd terminal oxidase subunit I DSM104443_00815 PF12705 PD-(D/E)XK nuclease superfamily DSM104443_00815 PF00580 UvrD/REP helicase N-terminal domain DSM104443_00815 PF13361 UvrD-like helicase C-terminal domain DSM104443_00818 PF01494 FAD binding domain DSM104443_00822 PF04337 Protein of unknown function, DUF480 DSM104443_00824 PF00561 alpha/beta hydrolase fold DSM104443_00827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_00827 PF03466 LysR substrate binding domain DSM104443_00828 PF02321 Outer membrane efflux protein DSM104443_00829 PF00873 AcrB/AcrD/AcrF family DSM104443_00830 PF00873 AcrB/AcrD/AcrF family DSM104443_00831 PF13533 Biotin-lipoyl like DSM104443_00832 PF01636 Phosphotransferase enzyme family DSM104443_00841 PF00692 dUTPase DSM104443_00842 PF02441 Flavoprotein DSM104443_00842 PF04127 DNA / pantothenate metabolism flavoprotein DSM104443_00843 PF04002 RadC-like JAB domain DSM104443_00844 PF00830 Ribosomal L28 family DSM104443_00845 PF00471 Ribosomal protein L33 DSM104443_00849 PF12795 Mechanosensitive ion channel porin domain DSM104443_00849 PF00924 Mechanosensitive ion channel DSM104443_00849 PF12794 Mechanosensitive ion channel inner membrane domain 1 DSM104443_00850 PF01029 NusB family DSM104443_00850 PF01189 16S rRNA methyltransferase RsmB/F DSM104443_00853 PF00551 Formyl transferase DSM104443_00854 PF00586 AIR synthase related protein, N-terminal domain DSM104443_00854 PF02769 AIR synthase related protein, C-terminal domain DSM104443_00858 PF02445 Quinolinate synthetase A protein DSM104443_00859 PF08299 Bacterial dnaA protein helix-turn-helix DSM104443_00859 PF00308 Bacterial dnaA protein DSM104443_00861 PF12626 Polymerase A arginine-rich C-terminus DSM104443_00861 PF01743 Poly A polymerase head domain DSM104443_00861 PF12627 Probable RNA and SrmB- binding site of polymerase A DSM104443_00862 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DSM104443_00863 PF01712 Deoxynucleoside kinase DSM104443_00870 PF02548 Ketopantoate hydroxymethyltransferase DSM104443_00871 PF02569 Pantoate-beta-alanine ligase DSM104443_00873 PF03788 LrgA family DSM104443_00879 PF00682 HMGL-like DSM104443_00880 PF02515 CoA-transferase family III DSM104443_00881 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00882 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00884 PF07715 TonB-dependent Receptor Plug Domain DSM104443_00884 PF00593 TonB dependent receptor DSM104443_00886 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00888 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00889 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_00890 PF02515 CoA-transferase family III DSM104443_00891 PF00701 Dihydrodipicolinate synthetase family DSM104443_00893 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104443_00894 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00895 PF02515 CoA-transferase family III DSM104443_00897 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_00898 PF07883 Cupin domain DSM104443_00899 PF10503 Esterase PHB depolymerase DSM104443_00901 PF18011 C-terminal domain found in long catalases DSM104443_00901 PF00199 Catalase DSM104443_00901 PF06628 Catalase-related immune-responsive DSM104443_00902 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain DSM104443_00903 PF07859 alpha/beta hydrolase fold DSM104443_00905 PF02470 MlaD protein DSM104443_00906 PF04403 Paraquat-inducible protein A DSM104443_00908 PF07687 Peptidase dimerisation domain DSM104443_00908 PF01546 Peptidase family M20/M25/M40 DSM104443_00910 PF13462 Thioredoxin DSM104443_00910 PF06965 Na+/H+ antiporter 1 DSM104443_00911 PF01022 Bacterial regulatory protein, arsR family DSM104443_00916 PF00667 FAD binding domain DSM104443_00916 PF00258 Flavodoxin DSM104443_00916 PF00175 Oxidoreductase NAD-binding domain DSM104443_00917 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DSM104443_00917 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DSM104443_00918 PF18267 Rubredoxin NAD+ reductase C-terminal domain DSM104443_00918 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_00918 PF04324 BFD-like [2Fe-2S] binding domain DSM104443_00918 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DSM104443_00918 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DSM104443_00919 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104443_00920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_00920 PF00384 Molybdopterin oxidoreductase DSM104443_00920 PF04324 BFD-like [2Fe-2S] binding domain DSM104443_00920 PF01568 Molydopterin dinucleotide binding domain DSM104443_00921 PF00175 Oxidoreductase NAD-binding domain DSM104443_00921 PF00042 Globin DSM104443_00921 PF00970 Oxidoreductase FAD-binding domain DSM104443_00922 PF00005 ABC transporter DSM104443_00923 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_00925 PF03861 ANTAR domain DSM104443_00925 PF08376 Nitrate and nitrite sensing DSM104443_00927 PF03412 Peptidase C39 family DSM104443_00927 PF00664 ABC transporter transmembrane region DSM104443_00927 PF00005 ABC transporter DSM104443_00928 PF00005 ABC transporter DSM104443_00928 PF03412 Peptidase C39 family DSM104443_00928 PF00664 ABC transporter transmembrane region DSM104443_00943 PF02547 Queuosine biosynthesis protein DSM104443_00946 PF03466 LysR substrate binding domain DSM104443_00946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_00949 PF00719 Inorganic pyrophosphatase DSM104443_00951 PF00892 EamA-like transporter family DSM104443_00952 PF13673 Acetyltransferase (GNAT) domain DSM104443_00953 PF01571 Aminomethyltransferase folate-binding domain DSM104443_00955 PF02769 AIR synthase related protein, C-terminal domain DSM104443_00955 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DSM104443_00955 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DSM104443_00956 PF01584 CheW-like domain DSM104443_00959 PF00392 Bacterial regulatory proteins, gntR family DSM104443_00959 PF00155 Aminotransferase class I and II DSM104443_00960 PF00072 Response regulator receiver domain DSM104443_00960 PF00486 Transcriptional regulatory protein, C terminal DSM104443_00961 PF07715 TonB-dependent Receptor Plug Domain DSM104443_00961 PF00593 TonB dependent receptor DSM104443_00964 PF04542 Sigma-70 region 2 DSM104443_00964 PF08281 Sigma-70, region 4 DSM104443_00968 PF03795 YCII-related domain DSM104443_00969 PF04279 Intracellular septation protein A DSM104443_00971 PF02811 PHP domain DSM104443_00972 PF01300 Telomere recombination DSM104443_00974 PF00579 tRNA synthetases class I (W and Y) DSM104443_00976 PF02616 Segregation and condensation protein ScpA DSM104443_00977 PF04079 Segregation and condensation complex subunit ScpB DSM104443_00978 PF00849 RNA pseudouridylate synthase DSM104443_00978 PF01479 S4 domain DSM104443_00981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_00981 PF03466 LysR substrate binding domain DSM104443_00984 PF00857 Isochorismatase family DSM104443_00987 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104443_00987 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104443_00990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DSM104443_00990 PF01243 Pyridoxamine 5'-phosphate oxidase DSM104443_00991 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104443_00992 PF00596 Class II Aldolase and Adducin N-terminal domain DSM104443_00995 PF05175 Methyltransferase small domain DSM104443_00996 PF01546 Peptidase family M20/M25/M40 DSM104443_00996 PF07687 Peptidase dimerisation domain DSM104443_00999 PF07963 Prokaryotic N-terminal methylation motif DSM104443_00999 PF00114 Pilin (bacterial filament) DSM104443_01000 PF00437 Type II/IV secretion system protein DSM104443_01001 PF14602 Hexapeptide repeat of succinyl-transferase DSM104443_01001 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_01001 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DSM104443_01003 PF00155 Aminotransferase class I and II DSM104443_01004 PF08241 Methyltransferase domain DSM104443_01007 PF01209 ubiE/COQ5 methyltransferase family DSM104443_01009 PF12706 Beta-lactamase superfamily domain DSM104443_01010 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_01011 PF01965 DJ-1/PfpI family DSM104443_01013 PF00326 Prolyl oligopeptidase family DSM104443_01014 PF14489 QueF-like protein DSM104443_01015 PF06470 SMC proteins Flexible Hinge Domain DSM104443_01015 PF02463 RecF/RecN/SMC N terminal domain DSM104443_01017 PF00533 BRCA1 C Terminus (BRCT) domain DSM104443_01017 PF03120 NAD-dependent DNA ligase OB-fold domain DSM104443_01017 PF01653 NAD-dependent DNA ligase adenylation domain DSM104443_01017 PF12826 Helix-hairpin-helix motif DSM104443_01017 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DSM104443_01018 PF00483 Nucleotidyl transferase DSM104443_01019 PF00156 Phosphoribosyl transferase domain DSM104443_01020 PF01048 Phosphorylase superfamily DSM104443_01021 PF01327 Polypeptide deformylase DSM104443_01028 PF01966 HD domain DSM104443_01028 PF08335 GlnD PII-uridylyltransferase DSM104443_01028 PF01842 ACT domain DSM104443_01028 PF01909 Nucleotidyltransferase domain DSM104443_01029 PF00557 Metallopeptidase family M24 DSM104443_01030 PF00318 Ribosomal protein S2 DSM104443_01031 PF00889 Elongation factor TS DSM104443_01032 PF00696 Amino acid kinase family DSM104443_01033 PF01765 Ribosome recycling factor DSM104443_01034 PF01255 Putative undecaprenyl diphosphate synthase DSM104443_01036 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DSM104443_01036 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DSM104443_01036 PF13288 DXP reductoisomerase C-terminal domain DSM104443_01037 PF02163 Peptidase family M50 DSM104443_01037 PF17820 PDZ domain DSM104443_01037 PF13180 PDZ domain DSM104443_01038 PF01103 Surface antigen DSM104443_01038 PF07244 Surface antigen variable number repeat DSM104443_01040 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DSM104443_01040 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_01041 PF07977 FabA-like domain DSM104443_01042 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DSM104443_01042 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_01043 PF02684 Lipid-A-disaccharide synthetase DSM104443_01044 PF01351 Ribonuclease HII DSM104443_01045 PF00588 SpoU rRNA Methylase family DSM104443_01045 PF08032 RNA 2'-O ribose methyltransferase substrate binding DSM104443_01047 PF01734 Patatin-like phospholipase DSM104443_01048 PF00657 GDSL-like Lipase/Acylhydrolase DSM104443_01048 PF03797 Autotransporter beta-domain DSM104443_01049 PF03618 Kinase/pyrophosphorylase DSM104443_01050 PF00391 PEP-utilising enzyme, mobile domain DSM104443_01050 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104443_01050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DSM104443_01051 PF13673 Acetyltransferase (GNAT) domain DSM104443_01053 PF01470 Pyroglutamyl peptidase DSM104443_01054 PF00501 AMP-binding enzyme DSM104443_01054 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01055 PF16916 Dimerisation domain of Zinc Transporter DSM104443_01055 PF01545 Cation efflux family DSM104443_01060 PF00069 Protein kinase domain DSM104443_01060 PF03793 PASTA domain DSM104443_01063 PF03169 OPT oligopeptide transporter protein DSM104443_01066 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01070 PF12833 Helix-turn-helix domain DSM104443_01070 PF12852 Cupin DSM104443_01072 PF08241 Methyltransferase domain DSM104443_01073 PF01209 ubiE/COQ5 methyltransferase family DSM104443_01079 PF07364 Metallopeptidase family M81 DSM104443_01079 PF07171 MlrC C-terminus DSM104443_01080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_01081 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_01083 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_01084 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01085 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01085 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_01086 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_01086 PF00005 ABC transporter DSM104443_01087 PF00005 ABC transporter DSM104443_01087 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_01091 PF01042 Endoribonuclease L-PSP DSM104443_01094 PF01022 Bacterial regulatory protein, arsR family DSM104443_01099 PF00753 Metallo-beta-lactamase superfamily DSM104443_01100 PF01938 TRAM domain DSM104443_01100 PF05958 tRNA (Uracil-5-)-methyltransferase DSM104443_01108 PF00005 ABC transporter DSM104443_01111 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DSM104443_01111 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DSM104443_01115 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01116 PF07729 FCD domain DSM104443_01116 PF00392 Bacterial regulatory proteins, gntR family DSM104443_01118 PF04675 DNA ligase N terminus DSM104443_01118 PF01068 ATP dependent DNA ligase domain DSM104443_01118 PF04679 ATP dependent DNA ligase C terminal region DSM104443_01119 PF04679 ATP dependent DNA ligase C terminal region DSM104443_01119 PF04675 DNA ligase N terminus DSM104443_01119 PF01068 ATP dependent DNA ligase domain DSM104443_01120 PF00437 Type II/IV secretion system protein DSM104443_01120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104443_01122 PF01804 Penicillin amidase DSM104443_01125 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DSM104443_01126 PF00270 DEAD/DEAH box helicase DSM104443_01126 PF08494 DEAD/H associated DSM104443_01126 PF00271 Helicase conserved C-terminal domain DSM104443_01131 PF01522 Polysaccharide deacetylase DSM104443_01134 PF01938 TRAM domain DSM104443_01134 PF05958 tRNA (Uracil-5-)-methyltransferase DSM104443_01135 PF01027 Inhibitor of apoptosis-promoting Bax1 DSM104443_01141 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01141 PF08448 PAS fold DSM104443_01141 PF13426 PAS domain DSM104443_01141 PF00072 Response regulator receiver domain DSM104443_01141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01143 PF00583 Acetyltransferase (GNAT) family DSM104443_01146 PF01370 NAD dependent epimerase/dehydratase family DSM104443_01147 PF07729 FCD domain DSM104443_01147 PF00392 Bacterial regulatory proteins, gntR family DSM104443_01148 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_01151 PF08448 PAS fold DSM104443_01151 PF08447 PAS fold DSM104443_01151 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01151 PF00563 EAL domain DSM104443_01152 PF01842 ACT domain DSM104443_01152 PF13840 ACT domain DSM104443_01152 PF00696 Amino acid kinase family DSM104443_01153 PF00326 Prolyl oligopeptidase family DSM104443_01153 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DSM104443_01154 PF05170 AsmA family DSM104443_01156 PF13356 Arm DNA-binding domain DSM104443_01156 PF00589 Phage integrase family DSM104443_01166 PF02384 N-6 DNA Methylase DSM104443_01171 PF06745 KaiC DSM104443_01172 PF00072 Response regulator receiver domain DSM104443_01172 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_01172 PF01627 Hpt domain DSM104443_01172 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01172 PF00989 PAS fold DSM104443_01179 PF12833 Helix-turn-helix domain DSM104443_01179 PF12852 Cupin DSM104443_01180 PF00106 short chain dehydrogenase DSM104443_01182 PF02211 Nitrile hydratase beta subunit DSM104443_01183 PF02979 Nitrile hydratase, alpha chain DSM104443_01185 PF07298 NnrU protein DSM104443_01186 PF12146 Serine aminopeptidase, S33 DSM104443_01187 PF00230 Major intrinsic protein DSM104443_01189 PF00563 EAL domain DSM104443_01189 PF13188 PAS domain DSM104443_01189 PF03707 Bacterial signalling protein N terminal repeat DSM104443_01189 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01192 PF02628 Cytochrome oxidase assembly protein DSM104443_01195 PF00106 short chain dehydrogenase DSM104443_01196 PF02653 Branched-chain amino acid transport system / permease component DSM104443_01198 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104443_01198 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104443_01199 PF00294 pfkB family carbohydrate kinase DSM104443_01201 PF11862 Domain of unknown function (DUF3382) DSM104443_01201 PF02653 Branched-chain amino acid transport system / permease component DSM104443_01202 PF00005 ABC transporter DSM104443_01203 PF00005 ABC transporter DSM104443_01204 PF00005 ABC transporter DSM104443_01204 PF03459 TOBE domain DSM104443_01211 PF00672 HAMP domain DSM104443_01211 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_01211 PF02743 Cache domain DSM104443_01216 PF00115 Cytochrome C and Quinol oxidase polypeptide I DSM104443_01217 PF01594 AI-2E family transporter DSM104443_01222 PF00171 Aldehyde dehydrogenase family DSM104443_01223 PF07722 Peptidase C26 DSM104443_01225 PF00561 alpha/beta hydrolase fold DSM104443_01226 PF00465 Iron-containing alcohol dehydrogenase DSM104443_01227 PF05163 DinB family DSM104443_01228 PF00144 Beta-lactamase DSM104443_01229 PF13382 Adenine deaminase C-terminal domain DSM104443_01229 PF01979 Amidohydrolase family DSM104443_01231 PF00120 Glutamine synthetase, catalytic domain DSM104443_01231 PF03951 Glutamine synthetase, beta-Grasp domain DSM104443_01233 PF02690 Na+/Pi-cotransporter DSM104443_01234 PF00171 Aldehyde dehydrogenase family DSM104443_01235 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DSM104443_01236 PF00392 Bacterial regulatory proteins, gntR family DSM104443_01236 PF07729 FCD domain DSM104443_01239 PF00149 Calcineurin-like phosphoesterase DSM104443_01240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_01240 PF00005 ABC transporter DSM104443_01241 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01241 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_01242 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01243 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_01245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_01247 PF00465 Iron-containing alcohol dehydrogenase DSM104443_01248 PF03466 LysR substrate binding domain DSM104443_01248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_01250 PF00005 ABC transporter DSM104443_01251 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01252 PF00266 Aminotransferase class-V DSM104443_01253 PF13847 Methyltransferase domain DSM104443_01258 PF03928 Haem-degrading DSM104443_01261 PF00701 Dihydrodipicolinate synthetase family DSM104443_01262 PF06804 NlpB/DapX lipoprotein DSM104443_01263 PF12706 Beta-lactamase superfamily domain DSM104443_01263 PF03099 Biotin/lipoate A/B protein ligase family DSM104443_01266 PF08007 Cupin superfamily protein DSM104443_01267 PF00578 AhpC/TSA family DSM104443_01268 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104443_01270 PF05188 MutS domain II DSM104443_01270 PF00488 MutS domain V DSM104443_01270 PF01624 MutS domain I DSM104443_01270 PF05190 MutS family domain IV DSM104443_01270 PF05192 MutS domain III DSM104443_01274 PF04972 BON domain DSM104443_01274 PF01476 LysM domain DSM104443_01275 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01279 PF00459 Inositol monophosphatase family DSM104443_01280 PF00588 SpoU rRNA Methylase family DSM104443_01282 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_01283 PF02082 Transcriptional regulator DSM104443_01284 PF00266 Aminotransferase class-V DSM104443_01285 PF01592 NifU-like N terminal domain DSM104443_01286 PF01521 Iron-sulphur cluster biosynthesis DSM104443_01287 PF07743 HSCB C-terminal oligomerisation domain DSM104443_01289 PF00012 Hsp70 protein DSM104443_01290 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_01291 PF04384 Iron-sulphur cluster assembly DSM104443_01294 PF07995 Glucose / Sorbosone dehydrogenase DSM104443_01295 PF00034 Cytochrome c DSM104443_01296 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01296 PF00593 TonB dependent receptor DSM104443_01297 PF13302 Acetyltransferase (GNAT) domain DSM104443_01297 PF00027 Cyclic nucleotide-binding domain DSM104443_01298 PF00158 Sigma-54 interaction domain DSM104443_01298 PF00072 Response regulator receiver domain DSM104443_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01300 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01303 PF00270 DEAD/DEAH box helicase DSM104443_01303 PF00271 Helicase conserved C-terminal domain DSM104443_01303 PF17757 UvrB interaction domain DSM104443_01303 PF03461 TRCF domain DSM104443_01303 PF02559 CarD-like/TRCF domain DSM104443_01304 PF05683 Fumarase C-terminus DSM104443_01304 PF05681 Fumarate hydratase (Fumerase) DSM104443_01305 PF03350 Uncharacterized protein family, UPF0114 DSM104443_01306 PF00501 AMP-binding enzyme DSM104443_01306 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01308 PF00501 AMP-binding enzyme DSM104443_01308 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01308 PF16177 Acetyl-coenzyme A synthetase N-terminus DSM104443_01310 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01310 PF00989 PAS fold DSM104443_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01310 PF18698 Histidine kinase sensor domain DSM104443_01310 PF00672 HAMP domain DSM104443_01311 PF00072 Response regulator receiver domain DSM104443_01311 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01312 PF00072 Response regulator receiver domain DSM104443_01312 PF00196 Bacterial regulatory proteins, luxR family DSM104443_01316 PF00474 Sodium:solute symporter family DSM104443_01325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104443_01325 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104443_01325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_01326 PF10369 Small subunit of acetolactate synthase DSM104443_01327 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DSM104443_01327 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DSM104443_01328 PF02666 Phosphatidylserine decarboxylase DSM104443_01329 PF01066 CDP-alcohol phosphatidyltransferase DSM104443_01331 PF08502 LeuA allosteric (dimerisation) domain DSM104443_01331 PF00682 HMGL-like DSM104443_01333 PF00248 Aldo/keto reductase family DSM104443_01335 PF08328 Adenylosuccinate lyase C-terminal DSM104443_01335 PF00206 Lyase DSM104443_01336 PF13417 Glutathione S-transferase, N-terminal domain DSM104443_01336 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_01339 PF00849 RNA pseudouridylate synthase DSM104443_01340 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_01341 PF00313 'Cold-shock' DNA-binding domain DSM104443_01342 PF02617 ATP-dependent Clp protease adaptor protein ClpS DSM104443_01343 PF02861 Clp amino terminal domain, pathogenicity island component DSM104443_01343 PF17871 AAA lid domain DSM104443_01343 PF07724 AAA domain (Cdc48 subfamily) DSM104443_01343 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104443_01343 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_01345 PF10518 TAT (twin-arginine translocation) pathway signal sequence DSM104443_01345 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding DSM104443_01345 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01346 PF02142 MGS-like domain DSM104443_01346 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104443_01346 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DSM104443_01347 PF13302 Acetyltransferase (GNAT) domain DSM104443_01348 PF00440 Bacterial regulatory proteins, tetR family DSM104443_01349 PF05872 Bacterial protein of unknown function (DUF853) DSM104443_01350 PF01709 Transcriptional regulator DSM104443_01352 PF02075 Crossover junction endodeoxyribonuclease RuvC DSM104443_01353 PF01330 RuvA N terminal domain DSM104443_01353 PF07499 RuvA, C-terminal domain DSM104443_01354 PF17864 RuvB AAA lid domain DSM104443_01354 PF05491 RuvB C-terminal winged helix domain DSM104443_01354 PF05496 Holliday junction DNA helicase RuvB P-loop domain DSM104443_01355 PF03061 Thioesterase superfamily DSM104443_01356 PF01618 MotA/TolQ/ExbB proton channel family DSM104443_01357 PF02472 Biopolymer transport protein ExbD/TolR DSM104443_01359 PF04052 TolB amino-terminal domain DSM104443_01359 PF07676 WD40-like Beta Propeller Repeat DSM104443_01360 PF00691 OmpA family DSM104443_01361 PF16331 TolA binding protein trimerisation DSM104443_01361 PF13525 Outer membrane lipoprotein DSM104443_01362 PF06508 Queuosine biosynthesis protein QueC DSM104443_01366 PF00186 Dihydrofolate reductase DSM104443_01367 PF00303 Thymidylate synthase DSM104443_01368 PF00583 Acetyltransferase (GNAT) family DSM104443_01369 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01369 PF00593 TonB dependent receptor DSM104443_01370 PF00672 HAMP domain DSM104443_01370 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01371 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01371 PF00072 Response regulator receiver domain DSM104443_01372 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01372 PF00593 TonB dependent receptor DSM104443_01373 PF17384 RimP C-terminal SH3 domain DSM104443_01373 PF02576 RimP N-terminal domain DSM104443_01374 PF08529 NusA N-terminal domain DSM104443_01374 PF13184 NusA-like KH domain DSM104443_01375 PF04760 Translation initiation factor IF-2, N-terminal region DSM104443_01375 PF11987 Translation-initiation factor 2 DSM104443_01375 PF08364 Bacterial translation initiation factor IF-2 associated region DSM104443_01375 PF00009 Elongation factor Tu GTP binding domain DSM104443_01376 PF02033 Ribosome-binding factor A DSM104443_01377 PF09157 Pseudouridine synthase II TruB, C-terminal DSM104443_01377 PF16198 tRNA pseudouridylate synthase B C-terminal domain DSM104443_01377 PF01509 TruB family pseudouridylate synthase (N terminal domain) DSM104443_01378 PF00312 Ribosomal protein S15 DSM104443_01379 PF01138 3' exoribonuclease family, domain 1 DSM104443_01379 PF03725 3' exoribonuclease family, domain 2 DSM104443_01379 PF00575 S1 RNA binding domain DSM104443_01379 PF00013 KH domain DSM104443_01379 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DSM104443_01384 PF01668 SmpB protein DSM104443_01385 PF03364 Polyketide cyclase / dehydrase and lipid transport DSM104443_01386 PF03658 RnfH family Ubiquitin DSM104443_01391 PF00478 IMP dehydrogenase / GMP reductase domain DSM104443_01391 PF00571 CBS domain DSM104443_01392 PF02540 NAD synthase DSM104443_01392 PF00958 GMP synthase C terminal domain DSM104443_01392 PF00117 Glutamine amidotransferase class-I DSM104443_01394 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01396 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01396 PF00593 TonB dependent receptor DSM104443_01398 PF03960 ArsC family DSM104443_01399 PF14437 MafB19-like deaminase DSM104443_01400 PF07733 Bacterial DNA polymerase III alpha NTPase domain DSM104443_01400 PF01336 OB-fold nucleic acid binding domain DSM104443_01400 PF14579 Helix-hairpin-helix motif DSM104443_01400 PF02811 PHP domain DSM104443_01400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DSM104443_01401 PF00708 Acylphosphatase DSM104443_01402 PF03462 PCRF domain DSM104443_01402 PF00472 RF-1 domain DSM104443_01403 PF01588 Putative tRNA binding domain DSM104443_01403 PF09334 tRNA synthetases class I (M) DSM104443_01404 PF10609 NUBPL iron-transfer P-loop NTPase DSM104443_01405 PF00692 dUTPase DSM104443_01406 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DSM104443_01406 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DSM104443_01408 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01412 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_01414 PF01381 Helix-turn-helix DSM104443_01416 PF07171 MlrC C-terminus DSM104443_01416 PF07364 Metallopeptidase family M81 DSM104443_01417 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01417 PF00593 TonB dependent receptor DSM104443_01419 PF01266 FAD dependent oxidoreductase DSM104443_01420 PF00144 Beta-lactamase DSM104443_01421 PF00854 POT family DSM104443_01422 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01423 PF03186 CobD/Cbib protein DSM104443_01423 PF17113 Regulatory signalling modulator protein AmpE DSM104443_01424 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01426 PF01970 Tripartite tricarboxylate transporter TctA family DSM104443_01427 PF00246 Zinc carboxypeptidase DSM104443_01428 PF01875 Memo-like protein DSM104443_01429 PF01871 AMMECR1 DSM104443_01432 PF03193 RsgA GTPase DSM104443_01433 PF01329 Pterin 4 alpha carbinolamine dehydratase DSM104443_01434 PF16491 CAAX prenyl protease N-terminal, five membrane helices DSM104443_01434 PF01435 Peptidase family M48 DSM104443_01435 PF00929 Exonuclease DSM104443_01436 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DSM104443_01436 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DSM104443_01438 PF13416 Bacterial extracellular solute-binding protein DSM104443_01439 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01440 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01441 PF00005 ABC transporter DSM104443_01441 PF17912 MalK OB fold domain DSM104443_01443 PF02464 Competence-damaged protein DSM104443_01444 PF01726 LexA DNA binding domain DSM104443_01444 PF00717 Peptidase S24-like DSM104443_01445 PF00154 recA bacterial DNA recombination protein DSM104443_01446 PF02631 RecX family DSM104443_01449 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DSM104443_01449 PF01411 tRNA synthetases class II (A) DSM104443_01449 PF02272 DHHA1 domain DSM104443_01451 PF00534 Glycosyl transferases group 1 DSM104443_01454 PF00005 ABC transporter DSM104443_01456 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01456 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104443_01457 PF02817 e3 binding domain DSM104443_01457 PF00364 Biotin-requiring enzyme DSM104443_01457 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DSM104443_01458 PF17831 Pyruvate dehydrogenase E1 component middle domain DSM104443_01458 PF00456 Transketolase, thiamine diphosphate binding domain DSM104443_01461 PF12706 Beta-lactamase superfamily domain DSM104443_01462 PF00437 Type II/IV secretion system protein DSM104443_01462 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104443_01463 PF01966 HD domain DSM104443_01464 PF17284 Spermidine synthase tetramerisation domain DSM104443_01465 PF17284 Spermidine synthase tetramerisation domain DSM104443_01466 PF00114 Pilin (bacterial filament) DSM104443_01466 PF07963 Prokaryotic N-terminal methylation motif DSM104443_01467 PF07963 Prokaryotic N-terminal methylation motif DSM104443_01467 PF00114 Pilin (bacterial filament) DSM104443_01468 PF07963 Prokaryotic N-terminal methylation motif DSM104443_01468 PF00114 Pilin (bacterial filament) DSM104443_01472 PF01435 Peptidase family M48 DSM104443_01473 PF01967 MoaC family DSM104443_01475 PF09828 Chromate resistance exported protein DSM104443_01476 PF01206 Sulfurtransferase TusA DSM104443_01477 PF00106 short chain dehydrogenase DSM104443_01478 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_01480 PF10458 Valyl tRNA synthetase tRNA binding arm DSM104443_01480 PF08264 Anticodon-binding domain of tRNA DSM104443_01480 PF00133 tRNA synthetases class I (I, L, M and V) DSM104443_01483 PF00883 Cytosol aminopeptidase family, catalytic domain DSM104443_01483 PF02789 Cytosol aminopeptidase family, N-terminal domain DSM104443_01487 PF01494 FAD binding domain DSM104443_01490 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01491 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01492 PF10017 Histidine-specific methyltransferase, SAM-dependent DSM104443_01494 PF03781 Sulfatase-modifying factor enzyme 1 DSM104443_01494 PF12867 DinB superfamily DSM104443_01495 PF02769 AIR synthase related protein, C-terminal domain DSM104443_01495 PF00586 AIR synthase related protein, N-terminal domain DSM104443_01496 PF12169 DNA polymerase III subunits gamma and tau domain III DSM104443_01496 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DSM104443_01496 PF12170 DNA polymerase III tau subunit V interacting with alpha DSM104443_01497 PF02575 YbaB/EbfC DNA-binding family DSM104443_01498 PF02132 RecR protein DSM104443_01498 PF13662 Toprim domain DSM104443_01505 PF03958 Bacterial type II/III secretion system short domain DSM104443_01505 PF00263 Bacterial type II and III secretion system protein DSM104443_01506 PF00194 Eukaryotic-type carbonic anhydrase DSM104443_01507 PF13191 AAA ATPase domain DSM104443_01507 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_01511 PF00082 Subtilase family DSM104443_01513 PF07690 Major Facilitator Superfamily DSM104443_01516 PF00069 Protein kinase domain DSM104443_01516 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_01518 PF00939 Sodium:sulfate symporter transmembrane region DSM104443_01520 PF00375 Sodium:dicarboxylate symporter family DSM104443_01522 PF00072 Response regulator receiver domain DSM104443_01522 PF00196 Bacterial regulatory proteins, luxR family DSM104443_01523 PF01627 Hpt domain DSM104443_01523 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01523 PF00072 Response regulator receiver domain DSM104443_01524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01524 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01524 PF00989 PAS fold DSM104443_01524 PF13426 PAS domain DSM104443_01524 PF13493 Domain of unknown function (DUF4118) DSM104443_01524 PF08447 PAS fold DSM104443_01525 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_01525 PF01464 Transglycosylase SLT domain DSM104443_01527 PF04828 Glutathione-dependent formaldehyde-activating enzyme DSM104443_01530 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DSM104443_01531 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01531 PF00593 TonB dependent receptor DSM104443_01532 PF17676 LD-carboxypeptidase C-terminal domain DSM104443_01532 PF02016 LD-carboxypeptidase N-terminal domain DSM104443_01533 PF00144 Beta-lactamase DSM104443_01534 PF01510 N-acetylmuramoyl-L-alanine amidase DSM104443_01535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_01536 PF07670 Nucleoside recognition DSM104443_01540 PF00704 Glycosyl hydrolases family 18 DSM104443_01540 PF00041 Fibronectin type III domain DSM104443_01541 PF02016 LD-carboxypeptidase N-terminal domain DSM104443_01541 PF17676 LD-carboxypeptidase C-terminal domain DSM104443_01543 PF03949 Malic enzyme, NAD binding domain DSM104443_01543 PF01515 Phosphate acetyl/butaryl transferase DSM104443_01543 PF00390 Malic enzyme, N-terminal domain DSM104443_01546 PF01553 Acyltransferase DSM104443_01550 PF00155 Aminotransferase class I and II DSM104443_01554 PF01264 Chorismate synthase DSM104443_01558 PF02151 UvrB/uvrC motif DSM104443_01558 PF01541 GIY-YIG catalytic domain DSM104443_01558 PF08459 UvrC Helix-hairpin-helix N-terminal DSM104443_01559 PF00145 C-5 cytosine-specific DNA methylase DSM104443_01559 PF13411 MerR HTH family regulatory protein DSM104443_01563 PF01022 Bacterial regulatory protein, arsR family DSM104443_01566 PF00330 Aconitase family (aconitate hydratase) DSM104443_01569 PF12833 Helix-turn-helix domain DSM104443_01569 PF02311 AraC-like ligand binding domain DSM104443_01570 PF01431 Peptidase family M13 DSM104443_01570 PF05649 Peptidase family M13 DSM104443_01572 PF01842 ACT domain DSM104443_01572 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_01572 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_01574 PF00529 HlyD membrane-fusion protein of T1SS DSM104443_01574 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_01575 PF07690 Major Facilitator Superfamily DSM104443_01576 PF00694 Aconitase C-terminal domain DSM104443_01577 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_01578 PF02774 Semialdehyde dehydrogenase, dimerisation domain DSM104443_01578 PF01118 Semialdehyde dehydrogenase, NAD binding domain DSM104443_01580 PF01416 tRNA pseudouridine synthase DSM104443_01581 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DSM104443_01582 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_01583 PF00290 Tryptophan synthase alpha chain DSM104443_01584 PF01039 Carboxyl transferase domain DSM104443_01584 PF17848 Acetyl-coA carboxylase zinc finger domain DSM104443_01585 PF02875 Mur ligase family, glutamate ligase domain DSM104443_01585 PF08245 Mur ligase middle domain DSM104443_01587 PF00156 Phosphoribosyl transferase domain DSM104443_01588 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104443_01591 PF01734 Patatin-like phospholipase DSM104443_01592 PF00149 Calcineurin-like phosphoesterase DSM104443_01593 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DSM104443_01594 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DSM104443_01597 PF09190 DALR domain DSM104443_01597 PF01406 tRNA synthetases class I (C) catalytic domain DSM104443_01599 PF00226 DnaJ domain DSM104443_01599 PF00684 DnaJ central domain DSM104443_01599 PF01556 DnaJ C terminal domain DSM104443_01600 PF00012 Hsp70 protein DSM104443_01601 PF01025 GrpE DSM104443_01602 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DSM104443_01603 PF00762 Ferrochelatase DSM104443_01604 PF01628 HrcA protein C terminal domain DSM104443_01605 PF01513 ATP-NAD kinase DSM104443_01606 PF02463 RecF/RecN/SMC N terminal domain DSM104443_01609 PF02230 Phospholipase/Carboxylesterase DSM104443_01610 PF00994 Probable molybdopterin binding domain DSM104443_01611 PF04751 Protein of unknown function (DUF615) DSM104443_01612 PF01523 Putative modulator of DNA gyrase DSM104443_01613 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_01615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DSM104443_01616 PF00578 AhpC/TSA family DSM104443_01620 PF00464 Serine hydroxymethyltransferase DSM104443_01621 PF03477 ATP cone domain DSM104443_01622 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DSM104443_01622 PF01872 RibD C-terminal domain DSM104443_01623 PF00677 Lumazine binding domain DSM104443_01625 PF00925 GTP cyclohydrolase II DSM104443_01625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DSM104443_01626 PF00885 6,7-dimethyl-8-ribityllumazine synthase DSM104443_01627 PF01029 NusB family DSM104443_01628 PF02769 AIR synthase related protein, C-terminal domain DSM104443_01628 PF00586 AIR synthase related protein, N-terminal domain DSM104443_01629 PF04608 Phosphatidylglycerophosphatase A DSM104443_01630 PF03009 Glycerophosphoryl diester phosphodiesterase family DSM104443_01632 PF13614 AAA domain DSM104443_01634 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104443_01634 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01635 PF00462 Glutaredoxin DSM104443_01635 PF08534 Redoxin DSM104443_01636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_01636 PF03466 LysR substrate binding domain DSM104443_01637 PF00440 Bacterial regulatory proteins, tetR family DSM104443_01641 PF02754 Cysteine-rich domain DSM104443_01641 PF13183 4Fe-4S dicluster domain DSM104443_01642 PF02915 Rubrerythrin DSM104443_01645 PF01979 Amidohydrolase family DSM104443_01650 PF01175 Urocanase Rossmann-like domain DSM104443_01650 PF17392 Urocanase C-terminal domain DSM104443_01650 PF17391 Urocanase N-terminal domain DSM104443_01658 PF10502 Signal peptidase, peptidase S26 DSM104443_01659 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_01659 PF00107 Zinc-binding dehydrogenase DSM104443_01662 PF00756 Putative esterase DSM104443_01664 PF03992 Antibiotic biosynthesis monooxygenase DSM104443_01666 PF00384 Molybdopterin oxidoreductase DSM104443_01666 PF18364 Molybdopterin oxidoreductase N-terminal domain DSM104443_01666 PF01568 Molydopterin dinucleotide binding domain DSM104443_01668 PF00221 Aromatic amino acid lyase DSM104443_01669 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01672 PF00920 Dehydratase family DSM104443_01673 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_01673 PF01842 ACT domain DSM104443_01673 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_01674 PF17912 MalK OB fold domain DSM104443_01674 PF03459 TOBE domain DSM104443_01674 PF00005 ABC transporter DSM104443_01676 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01677 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_01681 PF00684 DnaJ central domain DSM104443_01681 PF00226 DnaJ domain DSM104443_01681 PF01556 DnaJ C terminal domain DSM104443_01684 PF00672 HAMP domain DSM104443_01684 PF02203 Tar ligand binding domain homologue DSM104443_01684 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_01685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_01685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_01686 PF02615 Malate/L-lactate dehydrogenase DSM104443_01687 PF01557 Fumarylacetoacetate (FAA) hydrolase family DSM104443_01689 PF07729 FCD domain DSM104443_01689 PF00392 Bacterial regulatory proteins, gntR family DSM104443_01691 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_01692 PF08666 SAF domain DSM104443_01692 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DSM104443_01693 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_01694 PF08334 Type II secretion system (T2SS), protein G DSM104443_01694 PF07963 Prokaryotic N-terminal methylation motif DSM104443_01696 PF01425 Amidase DSM104443_01697 PF00561 alpha/beta hydrolase fold DSM104443_01701 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104443_01705 PF01464 Transglycosylase SLT domain DSM104443_01706 PF00873 AcrB/AcrD/AcrF family DSM104443_01707 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_01711 PF00571 CBS domain DSM104443_01712 PF00296 Luciferase-like monooxygenase DSM104443_01713 PF00521 DNA gyrase/topoisomerase IV, subunit A DSM104443_01714 PF00986 DNA gyrase B subunit, carboxyl terminus DSM104443_01714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01714 PF01751 Toprim domain DSM104443_01714 PF00204 DNA gyrase B DSM104443_01715 PF00072 Response regulator receiver domain DSM104443_01715 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01716 PF00989 PAS fold DSM104443_01716 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01716 PF01590 GAF domain DSM104443_01716 PF00563 EAL domain DSM104443_01717 PF00072 Response regulator receiver domain DSM104443_01717 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01717 PF09456 RcsC Alpha-Beta-Loop (ABL) DSM104443_01719 PF00440 Bacterial regulatory proteins, tetR family DSM104443_01719 PF08361 MAATS-type transcriptional repressor, C-terminal region DSM104443_01720 PF00529 HlyD membrane-fusion protein of T1SS DSM104443_01720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_01721 PF00873 AcrB/AcrD/AcrF family DSM104443_01722 PF02321 Outer membrane efflux protein DSM104443_01724 PF01799 [2Fe-2S] binding domain DSM104443_01724 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_01725 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104443_01729 PF00577 Outer membrane usher protein DSM104443_01729 PF13954 PapC N-terminal domain DSM104443_01735 PF13640 2OG-Fe(II) oxygenase superfamily DSM104443_01735 PF18331 PKHD-type hydroxylase C-terminal domain DSM104443_01738 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01739 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104443_01739 PF00072 Response regulator receiver domain DSM104443_01739 PF01627 Hpt domain DSM104443_01739 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01739 PF00672 HAMP domain DSM104443_01740 PF00072 Response regulator receiver domain DSM104443_01740 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01741 PF00072 Response regulator receiver domain DSM104443_01741 PF00196 Bacterial regulatory proteins, luxR family DSM104443_01742 PF00360 Phytochrome region DSM104443_01742 PF08446 PAS fold DSM104443_01742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01742 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01742 PF01590 GAF domain DSM104443_01744 PF00593 TonB dependent receptor DSM104443_01744 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01745 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01745 PF08448 PAS fold DSM104443_01745 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB DSM104443_01745 PF00672 HAMP domain DSM104443_01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01746 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01746 PF00072 Response regulator receiver domain DSM104443_01749 PF00072 Response regulator receiver domain DSM104443_01749 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01751 PF00593 TonB dependent receptor DSM104443_01751 PF07715 TonB-dependent Receptor Plug Domain DSM104443_01752 PF02203 Tar ligand binding domain homologue DSM104443_01752 PF00672 HAMP domain DSM104443_01752 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_01753 PF07690 Major Facilitator Superfamily DSM104443_01759 PF01612 3'-5' exonuclease DSM104443_01759 PF01367 5'-3' exonuclease, C-terminal SAM fold DSM104443_01759 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DSM104443_01759 PF00476 DNA polymerase family A DSM104443_01761 PF00589 Phage integrase family DSM104443_01776 PF16868 NMT1-like family DSM104443_01777 PF00202 Aminotransferase class-III DSM104443_01779 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104443_01783 PF13091 PLD-like domain DSM104443_01790 PF00563 EAL domain DSM104443_01790 PF03707 Bacterial signalling protein N terminal repeat DSM104443_01790 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01794 PF00230 Major intrinsic protein DSM104443_01801 PF13977 BetI-type transcriptional repressor, C-terminal DSM104443_01801 PF00440 Bacterial regulatory proteins, tetR family DSM104443_01807 PF00892 EamA-like transporter family DSM104443_01809 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DSM104443_01809 PF00056 lactate/malate dehydrogenase, NAD binding domain DSM104443_01812 PF08281 Sigma-70, region 4 DSM104443_01812 PF04542 Sigma-70 region 2 DSM104443_01816 PF01865 Protein of unknown function DUF47 DSM104443_01817 PF01384 Phosphate transporter family DSM104443_01820 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01821 PF04303 PrpF protein DSM104443_01822 PF00330 Aconitase family (aconitate hydratase) DSM104443_01822 PF00694 Aconitase C-terminal domain DSM104443_01823 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01824 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01826 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01827 PF00694 Aconitase C-terminal domain DSM104443_01827 PF00330 Aconitase family (aconitate hydratase) DSM104443_01830 PF00694 Aconitase C-terminal domain DSM104443_01830 PF00330 Aconitase family (aconitate hydratase) DSM104443_01832 PF03972 MmgE/PrpD family DSM104443_01834 PF00285 Citrate synthase, C-terminal domain DSM104443_01837 PF01575 MaoC like domain DSM104443_01838 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104443_01839 PF00392 Bacterial regulatory proteins, gntR family DSM104443_01839 PF07702 UTRA domain DSM104443_01841 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DSM104443_01842 PF02910 Fumarate reductase flavoprotein C-term DSM104443_01842 PF00890 FAD binding domain DSM104443_01843 PF13085 2Fe-2S iron-sulfur cluster binding domain DSM104443_01844 PF03937 Flavinator of succinate dehydrogenase DSM104443_01845 PF00285 Citrate synthase, C-terminal domain DSM104443_01846 PF16078 2-oxoglutarate dehydrogenase N-terminus DSM104443_01846 PF00676 Dehydrogenase E1 component DSM104443_01846 PF02779 Transketolase, pyrimidine binding domain DSM104443_01846 PF16870 2-oxoglutarate dehydrogenase C-terminal DSM104443_01847 PF02817 e3 binding domain DSM104443_01847 PF00364 Biotin-requiring enzyme DSM104443_01847 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DSM104443_01851 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01851 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104443_01852 PF03969 AFG1-like ATPase DSM104443_01853 PF00107 Zinc-binding dehydrogenase DSM104443_01853 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_01854 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01855 PF16177 Acetyl-coenzyme A synthetase N-terminus DSM104443_01855 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01855 PF00501 AMP-binding enzyme DSM104443_01857 PF00425 chorismate binding enzyme DSM104443_01857 PF04715 Anthranilate synthase component I, N terminal region DSM104443_01858 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DSM104443_01858 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DSM104443_01859 PF00501 AMP-binding enzyme DSM104443_01859 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01863 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_01866 PF00005 ABC transporter DSM104443_01866 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_01867 PF00005 ABC transporter DSM104443_01869 PF02653 Branched-chain amino acid transport system / permease component DSM104443_01871 PF13193 AMP-binding enzyme C-terminal domain DSM104443_01871 PF00501 AMP-binding enzyme DSM104443_01872 PF00764 Arginosuccinate synthase DSM104443_01873 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01873 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104443_01874 PF01266 FAD dependent oxidoreductase DSM104443_01874 PF05690 Thiazole biosynthesis protein ThiG DSM104443_01876 PF01012 Electron transfer flavoprotein domain DSM104443_01877 PF01012 Electron transfer flavoprotein domain DSM104443_01877 PF00766 Electron transfer flavoprotein FAD-binding domain DSM104443_01878 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_01878 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_01878 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_01878 PF12806 Acetyl-CoA dehydrogenase C-terminal like DSM104443_01879 PF02659 Putative manganese efflux pump DSM104443_01881 PF07995 Glucose / Sorbosone dehydrogenase DSM104443_01882 PF02321 Outer membrane efflux protein DSM104443_01884 PF00873 AcrB/AcrD/AcrF family DSM104443_01886 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01886 PF00563 EAL domain DSM104443_01886 PF08448 PAS fold DSM104443_01888 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_01889 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_01890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104443_01890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104443_01891 PF00171 Aldehyde dehydrogenase family DSM104443_01892 PF02080 TrkA-C domain DSM104443_01892 PF06826 Predicted Permease Membrane Region DSM104443_01897 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01897 PF00072 Response regulator receiver domain DSM104443_01901 PF16347 Domain of unknown function (DUF4976) DSM104443_01901 PF00884 Sulfatase DSM104443_01905 PF00196 Bacterial regulatory proteins, luxR family DSM104443_01905 PF00072 Response regulator receiver domain DSM104443_01906 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01906 PF00989 PAS fold DSM104443_01906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01909 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01911 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_01911 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_01911 PF01842 ACT domain DSM104443_01917 PF02785 Biotin carboxylase C-terminal domain DSM104443_01917 PF00289 Biotin carboxylase, N-terminal domain DSM104443_01917 PF00364 Biotin-requiring enzyme DSM104443_01917 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104443_01917 PF18140 Propionyl-coenzyme A carboxylase BT domain DSM104443_01919 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_01920 PF01039 Carboxyl transferase domain DSM104443_01923 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_01923 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_01923 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_01926 PF00108 Thiolase, N-terminal domain DSM104443_01926 PF02803 Thiolase, C-terminal domain DSM104443_01928 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_01928 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_01928 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_01930 PF00106 short chain dehydrogenase DSM104443_01931 PF02515 CoA-transferase family III DSM104443_01932 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104443_01932 PF00753 Metallo-beta-lactamase superfamily DSM104443_01934 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_01935 PF00694 Aconitase C-terminal domain DSM104443_01936 PF00330 Aconitase family (aconitate hydratase) DSM104443_01937 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_01938 PF03466 LysR substrate binding domain DSM104443_01938 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_01939 PF04909 Amidohydrolase DSM104443_01940 PF03737 Aldolase/RraA DSM104443_01943 PF00501 AMP-binding enzyme DSM104443_01944 PF00005 ABC transporter DSM104443_01944 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_01945 PF02653 Branched-chain amino acid transport system / permease component DSM104443_01948 PF00005 ABC transporter DSM104443_01950 PF00005 ABC transporter DSM104443_01950 PF08402 TOBE domain DSM104443_01954 PF01258 Prokaryotic dksA/traR C4-type zinc finger DSM104443_01955 PF01738 Dienelactone hydrolase family DSM104443_01956 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01956 PF13185 GAF domain DSM104443_01956 PF00563 EAL domain DSM104443_01959 PF00005 ABC transporter DSM104443_01960 PF12679 ABC-2 family transporter protein DSM104443_01961 PF04851 Type III restriction enzyme, res subunit DSM104443_01961 PF13307 Helicase C-terminal domain DSM104443_01965 PF01545 Cation efflux family DSM104443_01965 PF16916 Dimerisation domain of Zinc Transporter DSM104443_01966 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_01966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_01966 PF00672 HAMP domain DSM104443_01967 PF00486 Transcriptional regulatory protein, C terminal DSM104443_01967 PF00072 Response regulator receiver domain DSM104443_01971 PF00814 Glycoprotease family DSM104443_01973 PF03167 Uracil DNA glycosylase superfamily DSM104443_01977 PF01614 Bacterial transcriptional regulator DSM104443_01977 PF09339 IclR helix-turn-helix domain DSM104443_01978 PF03918 Cytochrome C biogenesis protein DSM104443_01979 PF08534 Redoxin DSM104443_01980 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DSM104443_01980 PF01578 Cytochrome C assembly protein DSM104443_01981 PF03100 CcmE DSM104443_01983 PF01578 Cytochrome C assembly protein DSM104443_01984 PF03379 CcmB protein DSM104443_01985 PF00005 ABC transporter DSM104443_01993 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_01995 PF07690 Major Facilitator Superfamily DSM104443_01996 PF03707 Bacterial signalling protein N terminal repeat DSM104443_01996 PF00563 EAL domain DSM104443_01996 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_01997 PF01966 HD domain DSM104443_01997 PF11871 Domain of unknown function (DUF3391) DSM104443_01998 PF02515 CoA-transferase family III DSM104443_02000 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_02000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104443_02000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DSM104443_02003 PF00072 Response regulator receiver domain DSM104443_02004 PF01627 Hpt domain DSM104443_02004 PF01584 CheW-like domain DSM104443_02004 PF09078 CheY binding DSM104443_02004 PF02895 Signal transducing histidine kinase, homodimeric domain DSM104443_02004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02005 PF00672 HAMP domain DSM104443_02005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_02005 PF02203 Tar ligand binding domain homologue DSM104443_02006 PF00672 HAMP domain DSM104443_02006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_02006 PF02203 Tar ligand binding domain homologue DSM104443_02007 PF01584 CheW-like domain DSM104443_02008 PF02203 Tar ligand binding domain homologue DSM104443_02008 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_02008 PF00672 HAMP domain DSM104443_02009 PF03705 CheR methyltransferase, all-alpha domain DSM104443_02009 PF01739 CheR methyltransferase, SAM binding domain DSM104443_02010 PF03975 CheD chemotactic sensory transduction DSM104443_02011 PF01339 CheB methylesterase DSM104443_02011 PF00072 Response regulator receiver domain DSM104443_02012 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DSM104443_02012 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DSM104443_02012 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DSM104443_02013 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_02015 PF01212 Beta-eliminating lyase DSM104443_02017 PF01965 DJ-1/PfpI family DSM104443_02018 PF02562 PhoH-like protein DSM104443_02018 PF13638 PIN domain DSM104443_02019 PF00578 AhpC/TSA family DSM104443_02020 PF01522 Polysaccharide deacetylase DSM104443_02021 PF00565 Staphylococcal nuclease homologue DSM104443_02021 PF00149 Calcineurin-like phosphoesterase DSM104443_02021 PF02872 5'-nucleotidase, C-terminal domain DSM104443_02021 PF00746 LPXTG cell wall anchor motif DSM104443_02023 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02025 PF00330 Aconitase family (aconitate hydratase) DSM104443_02026 PF00694 Aconitase C-terminal domain DSM104443_02028 PF01152 Bacterial-like globin DSM104443_02029 PF00679 Elongation factor G C-terminus DSM104443_02029 PF00009 Elongation factor Tu GTP binding domain DSM104443_02029 PF03144 Elongation factor Tu domain 2 DSM104443_02030 PF00563 EAL domain DSM104443_02030 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02030 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02032 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DSM104443_02032 PF06827 Zinc finger found in FPG and IleRS DSM104443_02033 PF02646 RmuC family DSM104443_02034 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104443_02034 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104443_02034 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_02035 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_02035 PF00107 Zinc-binding dehydrogenase DSM104443_02037 PF00561 alpha/beta hydrolase fold DSM104443_02038 PF00561 alpha/beta hydrolase fold DSM104443_02039 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02040 PF01144 Coenzyme A transferase DSM104443_02041 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_02044 PF01095 Pectinesterase DSM104443_02046 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DSM104443_02046 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_02048 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_02049 PF08450 SMP-30/Gluconolactonase/LRE-like region DSM104443_02050 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02051 PF00356 Bacterial regulatory proteins, lacI family DSM104443_02052 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DSM104443_02053 PF02597 ThiS family DSM104443_02054 PF02391 MoaE protein DSM104443_02055 PF01022 Bacterial regulatory protein, arsR family DSM104443_02056 PF00174 Oxidoreductase molybdopterin binding domain DSM104443_02063 PF00149 Calcineurin-like phosphoesterase DSM104443_02063 PF02872 5'-nucleotidase, C-terminal domain DSM104443_02065 PF00326 Prolyl oligopeptidase family DSM104443_02066 PF00034 Cytochrome c DSM104443_02067 PF07995 Glucose / Sorbosone dehydrogenase DSM104443_02074 PF00072 Response regulator receiver domain DSM104443_02075 PF00072 Response regulator receiver domain DSM104443_02075 PF01966 HD domain DSM104443_02078 PF00664 ABC transporter transmembrane region DSM104443_02078 PF03412 Peptidase C39 family DSM104443_02078 PF00005 ABC transporter DSM104443_02084 PF01022 Bacterial regulatory protein, arsR family DSM104443_02085 PF00717 Peptidase S24-like DSM104443_02085 PF01726 LexA DNA binding domain DSM104443_02087 PF07733 Bacterial DNA polymerase III alpha NTPase domain DSM104443_02087 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DSM104443_02087 PF14579 Helix-hairpin-helix motif DSM104443_02087 PF01336 OB-fold nucleic acid binding domain DSM104443_02087 PF02811 PHP domain DSM104443_02088 PF13276 HTH-like domain DSM104443_02088 PF00665 Integrase core domain DSM104443_02088 PF01527 Transposase DSM104443_02090 PF07715 TonB-dependent Receptor Plug Domain DSM104443_02090 PF00593 TonB dependent receptor DSM104443_02094 PF07715 TonB-dependent Receptor Plug Domain DSM104443_02094 PF00593 TonB dependent receptor DSM104443_02097 PF13458 Periplasmic binding protein DSM104443_02098 PF03109 ABC1 family DSM104443_02100 PF00480 ROK family DSM104443_02102 PF11897 Protein of unknown function (DUF3417) DSM104443_02102 PF00343 Carbohydrate phosphorylase DSM104443_02103 PF08323 Starch synthase catalytic domain DSM104443_02103 PF00534 Glycosyl transferases group 1 DSM104443_02104 PF00483 Nucleotidyl transferase DSM104443_02105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DSM104443_02105 PF02806 Alpha amylase, C-terminal all-beta domain DSM104443_02105 PF00128 Alpha amylase, catalytic domain DSM104443_02106 PF11896 Domain of unknown function (DUF3416) DSM104443_02107 PF16657 Maltogenic Amylase, C-terminal domain DSM104443_02107 PF00128 Alpha amylase, catalytic domain DSM104443_02108 PF00128 Alpha amylase, catalytic domain DSM104443_02108 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DSM104443_02109 PF11941 Domain of unknown function (DUF3459) DSM104443_02109 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DSM104443_02109 PF00128 Alpha amylase, catalytic domain DSM104443_02110 PF00128 Alpha amylase, catalytic domain DSM104443_02113 PF01068 ATP dependent DNA ligase domain DSM104443_02113 PF13298 DNA polymerase Ligase (LigD) DSM104443_02113 PF04679 ATP dependent DNA ligase C terminal region DSM104443_02114 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DSM104443_02114 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DSM104443_02117 PF00672 HAMP domain DSM104443_02117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02117 PF18698 Histidine kinase sensor domain DSM104443_02117 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02117 PF00989 PAS fold DSM104443_02118 PF01339 CheB methylesterase DSM104443_02119 PF03705 CheR methyltransferase, all-alpha domain DSM104443_02119 PF01739 CheR methyltransferase, SAM binding domain DSM104443_02120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104443_02120 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02120 PF01627 Hpt domain DSM104443_02120 PF00072 Response regulator receiver domain DSM104443_02120 PF00672 HAMP domain DSM104443_02121 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DSM104443_02121 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DSM104443_02123 PF00158 Sigma-54 interaction domain DSM104443_02123 PF02954 Bacterial regulatory protein, Fis family DSM104443_02123 PF00072 Response regulator receiver domain DSM104443_02124 PF00158 Sigma-54 interaction domain DSM104443_02124 PF02954 Bacterial regulatory protein, Fis family DSM104443_02125 PF02735 Ku70/Ku80 beta-barrel domain DSM104443_02126 PF13298 DNA polymerase Ligase (LigD) DSM104443_02126 PF01068 ATP dependent DNA ligase domain DSM104443_02126 PF04679 ATP dependent DNA ligase C terminal region DSM104443_02127 PF05532 CsbD-like DSM104443_02133 PF10415 Fumarase C C-terminus DSM104443_02133 PF00206 Lyase DSM104443_02134 PF01292 Prokaryotic cytochrome b561 DSM104443_02136 PF04264 YceI-like domain DSM104443_02139 PF07676 WD40-like Beta Propeller Repeat DSM104443_02139 PF00326 Prolyl oligopeptidase family DSM104443_02142 PF04324 BFD-like [2Fe-2S] binding domain DSM104443_02143 PF03544 Gram-negative bacterial TonB protein C-terminal DSM104443_02144 PF03239 Iron permease FTR1 family DSM104443_02145 PF07715 TonB-dependent Receptor Plug Domain DSM104443_02145 PF00593 TonB dependent receptor DSM104443_02146 PF13640 2OG-Fe(II) oxygenase superfamily DSM104443_02146 PF18331 PKHD-type hydroxylase C-terminal domain DSM104443_02148 PF00210 Ferritin-like domain DSM104443_02150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_02150 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_02150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_02155 PF13193 AMP-binding enzyme C-terminal domain DSM104443_02155 PF00501 AMP-binding enzyme DSM104443_02156 PF01039 Carboxyl transferase domain DSM104443_02157 PF13183 4Fe-4S dicluster domain DSM104443_02157 PF01565 FAD binding domain DSM104443_02157 PF02913 FAD linked oxidases, C-terminal domain DSM104443_02158 PF00392 Bacterial regulatory proteins, gntR family DSM104443_02158 PF07729 FCD domain DSM104443_02159 PF00266 Aminotransferase class-V DSM104443_02160 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02163 PF00171 Aldehyde dehydrogenase family DSM104443_02165 PF05199 GMC oxidoreductase DSM104443_02165 PF00732 GMC oxidoreductase DSM104443_02166 PF00202 Aminotransferase class-III DSM104443_02167 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DSM104443_02167 PF00034 Cytochrome c DSM104443_02167 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104443_02168 PF01799 [2Fe-2S] binding domain DSM104443_02168 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_02169 PF00501 AMP-binding enzyme DSM104443_02169 PF13193 AMP-binding enzyme C-terminal domain DSM104443_02172 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DSM104443_02172 PF06974 Protein of unknown function (DUF1298) DSM104443_02178 PF08360 QacR-like protein, C-terminal region DSM104443_02178 PF00440 Bacterial regulatory proteins, tetR family DSM104443_02180 PF00106 short chain dehydrogenase DSM104443_02181 PF00578 AhpC/TSA family DSM104443_02184 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_02184 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_02185 PF18125 RlmM ferredoxin-like domain DSM104443_02185 PF01728 FtsJ-like methyltransferase DSM104443_02187 PF01026 TatD related DNase DSM104443_02190 PF09115 DNA polymerase III, delta subunit, C terminal DSM104443_02191 PF02223 Thymidylate kinase DSM104443_02192 PF02618 YceG-like family DSM104443_02193 PF01063 Amino-transferase class IV DSM104443_02194 PF00109 Beta-ketoacyl synthase, N-terminal domain DSM104443_02194 PF02801 Beta-ketoacyl synthase, C-terminal domain DSM104443_02195 PF00550 Phosphopantetheine attachment site DSM104443_02197 PF00698 Acyl transferase domain DSM104443_02198 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DSM104443_02198 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DSM104443_02199 PF02504 Fatty acid synthesis protein DSM104443_02200 PF01783 Ribosomal L32p protein family DSM104443_02202 PF02545 Maf-like protein DSM104443_02203 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104443_02204 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02204 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02204 PF00563 EAL domain DSM104443_02205 PF01343 Peptidase family S49 DSM104443_02207 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_02208 PF01479 S4 domain DSM104443_02208 PF00849 RNA pseudouridylate synthase DSM104443_02209 PF10150 Ribonuclease E/G family DSM104443_02209 PF12111 Polyribonucleotide phosphorylase C terminal DSM104443_02209 PF00575 S1 RNA binding domain DSM104443_02210 PF01323 DSBA-like thioredoxin domain DSM104443_02211 PF03527 RHS protein DSM104443_02211 PF05593 RHS Repeat DSM104443_02215 PF01451 Low molecular weight phosphotyrosine protein phosphatase DSM104443_02217 PF04851 Type III restriction enzyme, res subunit DSM104443_02217 PF02151 UvrB/uvrC motif DSM104443_02217 PF12344 Ultra-violet resistance protein B DSM104443_02217 PF17757 UvrB interaction domain DSM104443_02217 PF00271 Helicase conserved C-terminal domain DSM104443_02218 PF00155 Aminotransferase class I and II DSM104443_02226 PF01227 GTP cyclohydrolase I DSM104443_02227 PF00390 Malic enzyme, N-terminal domain DSM104443_02227 PF03949 Malic enzyme, NAD binding domain DSM104443_02228 PF07885 Ion channel DSM104443_02228 PF00027 Cyclic nucleotide-binding domain DSM104443_02231 PF13492 GAF domain DSM104443_02231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02231 PF07730 Histidine kinase DSM104443_02232 PF00072 Response regulator receiver domain DSM104443_02232 PF00196 Bacterial regulatory proteins, luxR family DSM104443_02233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02233 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02233 PF00989 PAS fold DSM104443_02234 PF00072 Response regulator receiver domain DSM104443_02235 PF00563 EAL domain DSM104443_02235 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02235 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02237 PF06745 KaiC DSM104443_02238 PF07689 KaiB domain DSM104443_02239 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02239 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02239 PF00563 EAL domain DSM104443_02240 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02240 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02240 PF00563 EAL domain DSM104443_02244 PF00484 Carbonic anhydrase DSM104443_02245 PF00691 OmpA family DSM104443_02245 PF01389 OmpA-like transmembrane domain DSM104443_02247 PF00248 Aldo/keto reductase family DSM104443_02249 PF00005 ABC transporter DSM104443_02250 PF02653 Branched-chain amino acid transport system / permease component DSM104443_02251 PF13407 Periplasmic binding protein domain DSM104443_02252 PF01261 Xylose isomerase-like TIM barrel DSM104443_02254 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DSM104443_02254 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DSM104443_02256 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02257 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02259 PF00356 Bacterial regulatory proteins, lacI family DSM104443_02261 PF03648 Glycosyl hydrolase family 67 N-terminus DSM104443_02261 PF07477 Glycosyl hydrolase family 67 C-terminus DSM104443_02261 PF07488 Glycosyl hydrolase family 67 middle domain DSM104443_02262 PF01915 Glycosyl hydrolase family 3 C-terminal domain DSM104443_02262 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104443_02262 PF14310 Fibronectin type III-like domain DSM104443_02263 PF14310 Fibronectin type III-like domain DSM104443_02263 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104443_02263 PF01915 Glycosyl hydrolase family 3 C-terminal domain DSM104443_02267 PF01266 FAD dependent oxidoreductase DSM104443_02283 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DSM104443_02283 PF04616 Glycosyl hydrolases family 43 DSM104443_02285 PF13378 Enolase C-terminal domain-like DSM104443_02285 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DSM104443_02286 PF04616 Glycosyl hydrolases family 43 DSM104443_02286 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DSM104443_02290 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02292 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_02292 PF00529 HlyD membrane-fusion protein of T1SS DSM104443_02293 PF02321 Outer membrane efflux protein DSM104443_02294 PF01699 Sodium/calcium exchanger protein DSM104443_02297 PF02615 Malate/L-lactate dehydrogenase DSM104443_02298 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02299 PF00753 Metallo-beta-lactamase superfamily DSM104443_02303 PF00849 RNA pseudouridylate synthase DSM104443_02303 PF01479 S4 domain DSM104443_02307 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_02308 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02309 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02309 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_02310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_02310 PF00005 ABC transporter DSM104443_02311 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_02311 PF00005 ABC transporter DSM104443_02314 PF05853 beta-keto acid cleavage enzyme DSM104443_02315 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02316 PF13193 AMP-binding enzyme C-terminal domain DSM104443_02316 PF00501 AMP-binding enzyme DSM104443_02317 PF13545 Crp-like helix-turn-helix domain DSM104443_02317 PF00027 Cyclic nucleotide-binding domain DSM104443_02320 PF06772 Bacterial low temperature requirement A protein (LtrA) DSM104443_02322 PF00072 Response regulator receiver domain DSM104443_02322 PF00486 Transcriptional regulatory protein, C terminal DSM104443_02326 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02326 PF08448 PAS fold DSM104443_02326 PF13188 PAS domain DSM104443_02326 PF00072 Response regulator receiver domain DSM104443_02326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02327 PF12680 SnoaL-like domain DSM104443_02327 PF04542 Sigma-70 region 2 DSM104443_02327 PF08281 Sigma-70, region 4 DSM104443_02328 PF07730 Histidine kinase DSM104443_02328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02328 PF13492 GAF domain DSM104443_02328 PF13185 GAF domain DSM104443_02329 PF00072 Response regulator receiver domain DSM104443_02329 PF00196 Bacterial regulatory proteins, luxR family DSM104443_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02330 PF13185 GAF domain DSM104443_02330 PF07730 Histidine kinase DSM104443_02330 PF13492 GAF domain DSM104443_02331 PF13492 GAF domain DSM104443_02331 PF13185 GAF domain DSM104443_02331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02331 PF07730 Histidine kinase DSM104443_02332 PF00561 alpha/beta hydrolase fold DSM104443_02333 PF01062 Bestrophin, RFP-TM, chloride channel DSM104443_02336 PF00033 Cytochrome b/b6/petB DSM104443_02336 PF00032 Cytochrome b(C-terminal)/b6/petD DSM104443_02337 PF11809 Domain of unknown function (DUF3330) DSM104443_02337 PF00563 EAL domain DSM104443_02340 PF12697 Alpha/beta hydrolase family DSM104443_02349 PF01625 Peptide methionine sulfoxide reductase DSM104443_02350 PF00144 Beta-lactamase DSM104443_02352 PF01546 Peptidase family M20/M25/M40 DSM104443_02352 PF07687 Peptidase dimerisation domain DSM104443_02356 PF06441 Epoxide hydrolase N terminus DSM104443_02358 PF00196 Bacterial regulatory proteins, luxR family DSM104443_02358 PF00072 Response regulator receiver domain DSM104443_02359 PF07730 Histidine kinase DSM104443_02359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02360 PF01625 Peptide methionine sulfoxide reductase DSM104443_02361 PF01641 SelR domain DSM104443_02362 PF17991 Thioredoxin like C-terminal domain DSM104443_02362 PF00578 AhpC/TSA family DSM104443_02362 PF02683 Cytochrome C biogenesis protein transmembrane region DSM104443_02363 PF06441 Epoxide hydrolase N terminus DSM104443_02364 PF06441 Epoxide hydrolase N terminus DSM104443_02365 PF00072 Response regulator receiver domain DSM104443_02365 PF08448 PAS fold DSM104443_02365 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02365 PF13426 PAS domain DSM104443_02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02366 PF00196 Bacterial regulatory proteins, luxR family DSM104443_02366 PF00072 Response regulator receiver domain DSM104443_02367 PF00072 Response regulator receiver domain DSM104443_02367 PF00196 Bacterial regulatory proteins, luxR family DSM104443_02372 PF01066 CDP-alcohol phosphatidyltransferase DSM104443_02373 PF01541 GIY-YIG catalytic domain DSM104443_02373 PF02151 UvrB/uvrC motif DSM104443_02373 PF08459 UvrC Helix-hairpin-helix N-terminal DSM104443_02374 PF00933 Glycosyl hydrolase family 3 N terminal domain DSM104443_02375 PF01648 4'-phosphopantetheinyl transferase superfamily DSM104443_02376 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DSM104443_02377 PF02565 Recombination protein O C terminal DSM104443_02377 PF11967 Recombination protein O N terminal DSM104443_02378 PF01926 50S ribosome-binding GTPase DSM104443_02378 PF07650 KH domain DSM104443_02379 PF14622 Ribonuclease-III-like DSM104443_02379 PF00035 Double-stranded RNA binding motif DSM104443_02381 PF10502 Signal peptidase, peptidase S26 DSM104443_02382 PF00009 Elongation factor Tu GTP binding domain DSM104443_02382 PF00679 Elongation factor G C-terminus DSM104443_02382 PF03144 Elongation factor Tu domain 2 DSM104443_02382 PF06421 GTP-binding protein LepA C-terminus DSM104443_02384 PF13180 PDZ domain DSM104443_02386 PF03873 Anti sigma-E protein RseA, C-terminal domain DSM104443_02386 PF03872 Anti sigma-E protein RseA, N-terminal domain DSM104443_02387 PF04542 Sigma-70 region 2 DSM104443_02387 PF08281 Sigma-70, region 4 DSM104443_02388 PF00890 FAD binding domain DSM104443_02388 PF02910 Fumarate reductase flavoprotein C-term DSM104443_02389 PF03853 YjeF-related protein N-terminus DSM104443_02389 PF01256 Carbohydrate kinase DSM104443_02391 PF01743 Poly A polymerase head domain DSM104443_02391 PF00571 CBS domain DSM104443_02393 PF00005 ABC transporter DSM104443_02396 PF01757 Acyltransferase family DSM104443_02397 PF13302 Acetyltransferase (GNAT) domain DSM104443_02397 PF00117 Glutamine amidotransferase class-I DSM104443_02397 PF03352 Methyladenine glycosylase DSM104443_02397 PF13673 Acetyltransferase (GNAT) domain DSM104443_02397 PF00958 GMP synthase C terminal domain DSM104443_02400 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_02401 PF02515 CoA-transferase family III DSM104443_02404 PF13847 Methyltransferase domain DSM104443_02407 PF00072 Response regulator receiver domain DSM104443_02407 PF09308 LuxQ, periplasmic DSM104443_02407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02407 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02408 PF00080 Copper/zinc superoxide dismutase (SODC) DSM104443_02416 PF02245 Methylpurine-DNA glycosylase (MPG) DSM104443_02417 PF00072 Response regulator receiver domain DSM104443_02417 PF01339 CheB methylesterase DSM104443_02418 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02419 PF03061 Thioesterase superfamily DSM104443_02422 PF01979 Amidohydrolase family DSM104443_02434 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_02438 PF04909 Amidohydrolase DSM104443_02439 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02441 PF13492 GAF domain DSM104443_02441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02441 PF13493 Domain of unknown function (DUF4118) DSM104443_02441 PF02702 Osmosensitive K+ channel His kinase sensor domain DSM104443_02441 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02443 PF01066 CDP-alcohol phosphatidyltransferase DSM104443_02446 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104443_02446 PF02861 Clp amino terminal domain, pathogenicity island component DSM104443_02446 PF17871 AAA lid domain DSM104443_02446 PF07724 AAA domain (Cdc48 subfamily) DSM104443_02446 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_02447 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DSM104443_02447 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DSM104443_02448 PF04333 MlaA lipoprotein DSM104443_02452 PF12951 Passenger-associated-transport-repeat DSM104443_02454 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_02454 PF14821 Threonine synthase N terminus DSM104443_02456 PF01842 ACT domain DSM104443_02456 PF03447 Homoserine dehydrogenase, NAD binding domain DSM104443_02456 PF00742 Homoserine dehydrogenase DSM104443_02458 PF00155 Aminotransferase class I and II DSM104443_02459 PF00684 DnaJ central domain DSM104443_02459 PF01556 DnaJ C terminal domain DSM104443_02459 PF00226 DnaJ domain DSM104443_02460 PF04430 Protein of unknown function (DUF498/DUF598) DSM104443_02463 PF05088 Bacterial NAD-glutamate dehydrogenase DSM104443_02464 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_02465 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02466 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02467 PF00005 ABC transporter DSM104443_02469 PF00850 Histone deacetylase domain DSM104443_02471 PF17863 AAA lid domain DSM104443_02471 PF07726 ATPase family associated with various cellular activities (AAA) DSM104443_02473 PF13559 Domain of unknown function (DUF4129) DSM104443_02473 PF01841 Transglutaminase-like superfamily DSM104443_02473 PF11992 Domain of unknown function (DUF3488) DSM104443_02474 PF02810 SEC-C motif DSM104443_02474 PF07517 SecA DEAD-like domain DSM104443_02474 PF01043 SecA preprotein cross-linking domain DSM104443_02474 PF07516 SecA Wing and Scaffold domain DSM104443_02476 PF01476 LysM domain DSM104443_02476 PF01551 Peptidase family M23 DSM104443_02478 PF01975 Survival protein SurE DSM104443_02479 PF05649 Peptidase family M13 DSM104443_02479 PF01431 Peptidase family M13 DSM104443_02480 PF01431 Peptidase family M13 DSM104443_02480 PF05649 Peptidase family M13 DSM104443_02482 PF02347 Glycine cleavage system P-protein DSM104443_02483 PF01597 Glycine cleavage H-protein DSM104443_02484 PF01571 Aminomethyltransferase folate-binding domain DSM104443_02484 PF08669 Glycine cleavage T-protein C-terminal barrel domain DSM104443_02485 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_02486 PF00155 Aminotransferase class I and II DSM104443_02487 PF00107 Zinc-binding dehydrogenase DSM104443_02487 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_02491 PF00216 Bacterial DNA-binding protein DSM104443_02492 PF03484 tRNA synthetase B5 domain DSM104443_02492 PF03483 B3/4 domain DSM104443_02492 PF01588 Putative tRNA binding domain DSM104443_02492 PF03147 Ferredoxin-fold anticodon binding domain DSM104443_02492 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DSM104443_02493 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DSM104443_02493 PF01409 tRNA synthetases class II core domain (F) DSM104443_02494 PF00453 Ribosomal protein L20 DSM104443_02495 PF01632 Ribosomal protein L35 DSM104443_02496 PF05198 Translation initiation factor IF-3, N-terminal domain DSM104443_02496 PF00707 Translation initiation factor IF-3, C-terminal domain DSM104443_02497 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104443_02497 PF02824 TGS domain DSM104443_02497 PF03129 Anticodon binding domain DSM104443_02497 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DSM104443_02498 PF13458 Periplasmic binding protein DSM104443_02499 PF04909 Amidohydrolase DSM104443_02500 PF03737 Aldolase/RraA DSM104443_02501 PF04909 Amidohydrolase DSM104443_02502 PF04303 PrpF protein DSM104443_02503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_02503 PF03466 LysR substrate binding domain DSM104443_02504 PF01717 Cobalamin-independent synthase, Catalytic domain DSM104443_02505 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DSM104443_02505 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DSM104443_02508 PF01494 FAD binding domain DSM104443_02509 PF00005 ABC transporter DSM104443_02510 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_02510 PF00005 ABC transporter DSM104443_02513 PF13458 Periplasmic binding protein DSM104443_02514 PF00775 Dioxygenase DSM104443_02515 PF00775 Dioxygenase DSM104443_02515 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DSM104443_02516 PF01614 Bacterial transcriptional regulator DSM104443_02516 PF09339 IclR helix-turn-helix domain DSM104443_02517 PF10397 Adenylosuccinate lyase C-terminus DSM104443_02517 PF00206 Lyase DSM104443_02519 PF00561 alpha/beta hydrolase fold DSM104443_02520 PF01144 Coenzyme A transferase DSM104443_02521 PF01144 Coenzyme A transferase DSM104443_02523 PF02653 Branched-chain amino acid transport system / permease component DSM104443_02524 PF02653 Branched-chain amino acid transport system / permease component DSM104443_02525 PF00005 ABC transporter DSM104443_02525 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_02526 PF00005 ABC transporter DSM104443_02527 PF01774 UreD urease accessory protein DSM104443_02528 PF00547 Urease, gamma subunit DSM104443_02529 PF00699 Urease beta subunit DSM104443_02530 PF01979 Amidohydrolase family DSM104443_02530 PF00449 Urease alpha-subunit, N-terminal domain DSM104443_02531 PF02814 UreE urease accessory protein, N-terminal domain DSM104443_02531 PF05194 UreE urease accessory protein, C-terminal domain DSM104443_02532 PF01730 UreF DSM104443_02533 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104443_02535 PF14307 Glycosyltransferase WbsX DSM104443_02535 PF05045 Rhamnan synthesis protein F DSM104443_02537 PF00583 Acetyltransferase (GNAT) family DSM104443_02537 PF13673 Acetyltransferase (GNAT) domain DSM104443_02538 PF17785 PUA-like domain DSM104443_02538 PF10672 S-adenosylmethionine-dependent methyltransferase DSM104443_02539 PF01661 Macro domain DSM104443_02542 PF02824 TGS domain DSM104443_02542 PF04607 Region found in RelA / SpoT proteins DSM104443_02542 PF13291 ACT domain DSM104443_02544 PF14403 Circularly permuted ATP-grasp type 2 DSM104443_02545 PF14403 Circularly permuted ATP-grasp type 2 DSM104443_02545 PF04168 A predicted alpha-helical domain with a conserved ER motif. DSM104443_02549 PF04909 Amidohydrolase DSM104443_02552 PF03772 Competence protein DSM104443_02552 PF00753 Metallo-beta-lactamase superfamily DSM104443_02554 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104443_02557 PF00005 ABC transporter DSM104443_02558 PF02687 FtsX-like permease family DSM104443_02558 PF12704 MacB-like periplasmic core domain DSM104443_02560 PF17768 RecJ OB domain DSM104443_02560 PF01368 DHH family DSM104443_02560 PF02272 DHHA1 domain DSM104443_02562 PF03462 PCRF domain DSM104443_02562 PF00472 RF-1 domain DSM104443_02563 PF01546 Peptidase family M20/M25/M40 DSM104443_02563 PF07687 Peptidase dimerisation domain DSM104443_02565 PF01336 OB-fold nucleic acid binding domain DSM104443_02565 PF00152 tRNA synthetases class II (D, K and N) DSM104443_02567 PF00919 Uncharacterized protein family UPF0004 DSM104443_02567 PF18693 TRAM domain DSM104443_02567 PF04055 Radical SAM superfamily DSM104443_02568 PF07879 PHB/PHA accumulation regulator DNA-binding domain DSM104443_02568 PF05233 PHB accumulation regulatory domain DSM104443_02569 PF00106 short chain dehydrogenase DSM104443_02570 PF00106 short chain dehydrogenase DSM104443_02571 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DSM104443_02573 PF02578 Multi-copper polyphenol oxidoreductase laccase DSM104443_02574 PF00849 RNA pseudouridylate synthase DSM104443_02575 PF13525 Outer membrane lipoprotein DSM104443_02576 PF13089 Polyphosphate kinase N-terminal domain DSM104443_02576 PF13090 Polyphosphate kinase C-terminal domain 2 DSM104443_02576 PF02503 Polyphosphate kinase middle domain DSM104443_02576 PF17941 Polyphosphate kinase C-terminal domain 1 DSM104443_02577 PF02541 Ppx/GppA phosphatase family DSM104443_02578 PF00171 Aldehyde dehydrogenase family DSM104443_02579 PF00107 Zinc-binding dehydrogenase DSM104443_02579 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_02580 PF00171 Aldehyde dehydrogenase family DSM104443_02581 PF05721 Phytanoyl-CoA dioxygenase (PhyH) DSM104443_02586 PF00005 ABC transporter DSM104443_02587 PF13472 GDSL-like Lipase/Acylhydrolase family DSM104443_02588 PF00581 Rhodanese-like domain DSM104443_02589 PF03793 PASTA domain DSM104443_02589 PF00069 Protein kinase domain DSM104443_02591 PF02542 YgbB family DSM104443_02592 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DSM104443_02593 PF01464 Transglycosylase SLT domain DSM104443_02593 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_02594 PF00300 Histidine phosphatase superfamily (branch 1) DSM104443_02595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104443_02595 PF02403 Seryl-tRNA synthetase N-terminal domain DSM104443_02596 PF16193 AAA C-terminal domain DSM104443_02596 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_02596 PF12002 MgsA AAA+ ATPase C terminal DSM104443_02597 PF03466 LysR substrate binding domain DSM104443_02597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_02599 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104443_02599 PF02558 Ketopantoate reductase PanE/ApbA DSM104443_02600 PF00464 Serine hydroxymethyltransferase DSM104443_02601 PF00266 Aminotransferase class-V DSM104443_02602 PF00849 RNA pseudouridylate synthase DSM104443_02603 PF03548 Outer membrane lipoprotein carrier protein LolA DSM104443_02604 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DSM104443_02604 PF17854 FtsK alpha domain DSM104443_02604 PF09397 Ftsk gamma domain DSM104443_02604 PF01580 FtsK/SpoIIIE family DSM104443_02605 PF13545 Crp-like helix-turn-helix domain DSM104443_02605 PF00027 Cyclic nucleotide-binding domain DSM104443_02606 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_02607 PF01713 Smr domain DSM104443_02607 PF00488 MutS domain V DSM104443_02608 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DSM104443_02609 PF00892 EamA-like transporter family DSM104443_02610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DSM104443_02611 PF00535 Glycosyl transferase family 2 DSM104443_02612 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02612 PF02911 Formyl transferase, C-terminal domain DSM104443_02612 PF00551 Formyl transferase DSM104443_02613 PF06736 Protein of unknown function (DUF1211) DSM104443_02614 PF02911 Formyl transferase, C-terminal domain DSM104443_02614 PF00551 Formyl transferase DSM104443_02614 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02615 PF00731 AIR carboxylase DSM104443_02616 PF02222 ATP-grasp domain DSM104443_02616 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DSM104443_02618 PF06167 Glucose-regulated metallo-peptidase M90 DSM104443_02621 PF00543 Nitrogen regulatory protein P-II DSM104443_02622 PF00795 Carbon-nitrogen hydrolase DSM104443_02622 PF02540 NAD synthase DSM104443_02625 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_02626 PF10531 SLBB domain DSM104443_02628 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02629 PF00294 pfkB family carbohydrate kinase DSM104443_02630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DSM104443_02630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DSM104443_02630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DSM104443_02631 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DSM104443_02632 PF18073 Rubredoxin metal binding domain DSM104443_02634 PF00216 Bacterial DNA-binding protein DSM104443_02635 PF00575 S1 RNA binding domain DSM104443_02636 PF02224 Cytidylate kinase DSM104443_02637 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DSM104443_02638 PF01842 ACT domain DSM104443_02638 PF02153 Prephenate dehydrogenase DSM104443_02639 PF00155 Aminotransferase class I and II DSM104443_02640 PF00800 Prephenate dehydratase DSM104443_02640 PF01817 Chorismate mutase type II DSM104443_02640 PF01842 ACT domain DSM104443_02641 PF01842 ACT domain DSM104443_02641 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_02641 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_02642 PF00266 Aminotransferase class-V DSM104443_02643 PF03989 DNA gyrase C-terminal domain, beta-propeller DSM104443_02643 PF00521 DNA gyrase/topoisomerase IV, subunit A DSM104443_02644 PF00691 OmpA family DSM104443_02645 PF01979 Amidohydrolase family DSM104443_02647 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_02650 PF01177 Asp/Glu/Hydantoin racemase DSM104443_02657 PF00534 Glycosyl transferases group 1 DSM104443_02657 PF00535 Glycosyl transferase family 2 DSM104443_02658 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_02659 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104443_02659 PF00753 Metallo-beta-lactamase superfamily DSM104443_02662 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_02662 PF01434 Peptidase family M41 DSM104443_02662 PF17862 AAA+ lid domain DSM104443_02667 PF00080 Copper/zinc superoxide dismutase (SODC) DSM104443_02671 PF13247 4Fe-4S dicluster domain DSM104443_02672 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_02672 PF01568 Molydopterin dinucleotide binding domain DSM104443_02672 PF00384 Molybdopterin oxidoreductase DSM104443_02678 PF04055 Radical SAM superfamily DSM104443_02678 PF06463 Molybdenum Cofactor Synthesis C DSM104443_02679 PF02634 FdhD/NarQ family DSM104443_02680 PF12804 MobA-like NTP transferase domain DSM104443_02682 PF03454 MoeA C-terminal region (domain IV) DSM104443_02682 PF00994 Probable molybdopterin binding domain DSM104443_02682 PF03453 MoeA N-terminal region (domain I and II) DSM104443_02687 PF00440 Bacterial regulatory proteins, tetR family DSM104443_02687 PF08359 YsiA-like protein, C-terminal region DSM104443_02688 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_02689 PF00873 AcrB/AcrD/AcrF family DSM104443_02692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_02692 PF03466 LysR substrate binding domain DSM104443_02693 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DSM104443_02693 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DSM104443_02695 PF01507 Phosphoadenosine phosphosulfate reductase family DSM104443_02696 PF01507 Phosphoadenosine phosphosulfate reductase family DSM104443_02697 PF00009 Elongation factor Tu GTP binding domain DSM104443_02698 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DSM104443_02700 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02701 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02702 PF00005 ABC transporter DSM104443_02702 PF12857 TOBE-like domain DSM104443_02702 PF17850 CysA C-terminal regulatory domain DSM104443_02703 PF00175 Oxidoreductase NAD-binding domain DSM104443_02703 PF00970 Oxidoreductase FAD-binding domain DSM104443_02704 PF00581 Rhodanese-like domain DSM104443_02705 PF10417 C-terminal domain of 1-Cys peroxiredoxin DSM104443_02705 PF00578 AhpC/TSA family DSM104443_02706 PF03466 LysR substrate binding domain DSM104443_02706 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_02707 PF03358 NADPH-dependent FMN reductase DSM104443_02708 PF09084 NMT1/THI5 like DSM104443_02709 PF00296 Luciferase-like monooxygenase DSM104443_02710 PF09084 NMT1/THI5 like DSM104443_02711 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02713 PF00005 ABC transporter DSM104443_02716 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DSM104443_02717 PF04377 Arginine-tRNA-protein transferase, C terminus DSM104443_02717 PF04376 Arginine-tRNA-protein transferase, N terminus DSM104443_02718 PF01180 Dihydroorotate dehydrogenase DSM104443_02719 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DSM104443_02719 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DSM104443_02720 PF04060 Putative Fe-S cluster DSM104443_02721 PF00730 HhH-GPD superfamily base excision DNA repair protein DSM104443_02721 PF00633 Helix-hairpin-helix motif DSM104443_02721 PF10576 Iron-sulfur binding domain of endonuclease III DSM104443_02724 PF00034 Cytochrome c DSM104443_02726 PF04542 Sigma-70 region 2 DSM104443_02726 PF04545 Sigma-70, region 4 DSM104443_02727 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02727 PF00563 EAL domain DSM104443_02727 PF08448 PAS fold DSM104443_02728 PF00929 Exonuclease DSM104443_02729 PF00075 RNase H DSM104443_02731 PF16123 Hydroxyacylglutathione hydrolase C-terminus DSM104443_02731 PF00753 Metallo-beta-lactamase superfamily DSM104443_02732 PF13673 Acetyltransferase (GNAT) domain DSM104443_02733 PF00400 WD domain, G-beta repeat DSM104443_02733 PF00931 NB-ARC domain DSM104443_02737 PF01464 Transglycosylase SLT domain DSM104443_02737 PF01476 LysM domain DSM104443_02738 PF01432 Peptidase family M3 DSM104443_02739 PF00005 ABC transporter DSM104443_02739 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_02740 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_02740 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02741 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_02742 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_02743 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_02749 PF00216 Bacterial DNA-binding protein DSM104443_02750 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_02750 PF02190 ATP-dependent protease La (LON) substrate-binding domain DSM104443_02750 PF05362 Lon protease (S16) C-terminal proteolytic domain DSM104443_02751 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104443_02751 PF07724 AAA domain (Cdc48 subfamily) DSM104443_02751 PF06689 ClpX C4-type zinc finger DSM104443_02752 PF00574 Clp protease DSM104443_02753 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104443_02753 PF05698 Bacterial trigger factor protein (TF) C-terminus DSM104443_02753 PF05697 Bacterial trigger factor protein (TF) DSM104443_02757 PF01593 Flavin containing amine oxidoreductase DSM104443_02758 PF00106 short chain dehydrogenase DSM104443_02761 PF03793 PASTA domain DSM104443_02761 PF00069 Protein kinase domain DSM104443_02762 PF18073 Rubredoxin metal binding domain DSM104443_02764 PF01168 Alanine racemase, N-terminal domain DSM104443_02764 PF00842 Alanine racemase, C-terminal domain DSM104443_02765 PF00772 DnaB-like helicase N terminal domain DSM104443_02765 PF03796 DnaB-like helicase C terminal domain DSM104443_02766 PF03948 Ribosomal protein L9, C-terminal domain DSM104443_02766 PF01281 Ribosomal protein L9, N-terminal domain DSM104443_02767 PF01084 Ribosomal protein S18 DSM104443_02769 PF01250 Ribosomal protein S6 DSM104443_02770 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02774 PF13614 AAA domain DSM104443_02778 PF00483 Nucleotidyl transferase DSM104443_02778 PF01050 Mannose-6-phosphate isomerase DSM104443_02780 PF05193 Peptidase M16 inactive domain DSM104443_02780 PF00675 Insulinase (Peptidase family M16) DSM104443_02781 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02782 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DSM104443_02782 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DSM104443_02782 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DSM104443_02786 PF00733 Asparagine synthase DSM104443_02786 PF13537 Glutamine amidotransferase domain DSM104443_02787 PF14602 Hexapeptide repeat of succinyl-transferase DSM104443_02787 PF12464 Maltose acetyltransferase DSM104443_02789 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DSM104443_02790 PF05711 Macrocin-O-methyltransferase (TylF) DSM104443_02793 PF00535 Glycosyl transferase family 2 DSM104443_02798 PF00005 ABC transporter DSM104443_02800 PF11380 Stealth protein CR2, conserved region 2 DSM104443_02800 PF00534 Glycosyl transferases group 1 DSM104443_02800 PF17101 Stealth protein CR1, conserved region 1 DSM104443_02800 PF17103 Stealth protein CR4, conserved region 4 DSM104443_02800 PF17102 Stealth protein CR3, conserved region 3 DSM104443_02801 PF08241 Methyltransferase domain DSM104443_02803 PF00248 Aldo/keto reductase family DSM104443_02804 PF13439 Glycosyltransferase Family 4 DSM104443_02804 PF00534 Glycosyl transferases group 1 DSM104443_02805 PF00535 Glycosyl transferase family 2 DSM104443_02807 PF00535 Glycosyl transferase family 2 DSM104443_02808 PF16363 GDP-mannose 4,6 dehydratase DSM104443_02809 PF02543 Carbamoyltransferase N-terminus DSM104443_02809 PF16861 Carbamoyltransferase C-terminus DSM104443_02810 PF01370 NAD dependent epimerase/dehydratase family DSM104443_02811 PF16363 GDP-mannose 4,6 dehydratase DSM104443_02812 PF00953 Glycosyl transferase family 4 DSM104443_02813 PF01451 Low molecular weight phosphotyrosine protein phosphatase DSM104443_02815 PF00588 SpoU rRNA Methylase family DSM104443_02815 PF08032 RNA 2'-O ribose methyltransferase substrate binding DSM104443_02816 PF00773 RNB domain DSM104443_02816 PF17876 Cold shock domain DSM104443_02816 PF00575 S1 RNA binding domain DSM104443_02816 PF08461 Ribonuclease R winged-helix domain DSM104443_02816 PF08206 Ribonuclease B OB domain DSM104443_02819 PF00709 Adenylosuccinate synthetase DSM104443_02820 PF13393 Histidyl-tRNA synthetase DSM104443_02822 PF01145 SPFH domain / Band 7 family DSM104443_02823 PF01145 SPFH domain / Band 7 family DSM104443_02823 PF12221 Bacterial membrane protein N terminal DSM104443_02824 PF16360 GTP-binding GTPase Middle Region DSM104443_02824 PF01926 50S ribosome-binding GTPase DSM104443_02824 PF13167 GTP-binding GTPase N-terminal DSM104443_02825 PF17209 Hfq protein DSM104443_02826 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DSM104443_02826 PF01926 50S ribosome-binding GTPase DSM104443_02827 PF13360 PQQ-like domain DSM104443_02828 PF09976 Tetratricopeptide repeat-like domain DSM104443_02829 PF03129 Anticodon binding domain DSM104443_02829 PF13393 Histidyl-tRNA synthetase DSM104443_02830 PF04551 GcpE protein DSM104443_02831 PF13464 Domain of unknown function (DUF4115) DSM104443_02833 PF04055 Radical SAM superfamily DSM104443_02834 PF00334 Nucleoside diphosphate kinase DSM104443_02835 PF01171 PP-loop family DSM104443_02835 PF11734 TilS substrate C-terminal domain DSM104443_02835 PF09179 TilS substrate binding domain DSM104443_02836 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DSM104443_02837 PF01923 Cobalamin adenosyltransferase DSM104443_02838 PF04542 Sigma-70 region 2 DSM104443_02838 PF08281 Sigma-70, region 4 DSM104443_02840 PF01497 Periplasmic binding protein DSM104443_02842 PF00793 DAHP synthetase I family DSM104443_02842 PF18152 DAHP synthase ferredoxin-like domain DSM104443_02844 PF00793 DAHP synthetase I family DSM104443_02845 PF00793 DAHP synthetase I family DSM104443_02848 PF00550 Phosphopantetheine attachment site DSM104443_02849 PF07977 FabA-like domain DSM104443_02853 PF00109 Beta-ketoacyl synthase, N-terminal domain DSM104443_02853 PF02801 Beta-ketoacyl synthase, C-terminal domain DSM104443_02856 PF00535 Glycosyl transferase family 2 DSM104443_02858 PF01641 SelR domain DSM104443_02859 PF01523 Putative modulator of DNA gyrase DSM104443_02860 PF00795 Carbon-nitrogen hydrolase DSM104443_02861 PF13502 AsmA-like C-terminal region DSM104443_02861 PF13116 Protein of unknown function DSM104443_02862 PF08335 GlnD PII-uridylyltransferase DSM104443_02862 PF03710 Glutamate-ammonia ligase adenylyltransferase DSM104443_02863 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_02864 PF01063 Amino-transferase class IV DSM104443_02866 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104443_02869 PF09722 Protein of unknown function (DUF2384) DSM104443_02870 PF08808 RES domain DSM104443_02872 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_02878 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104443_02879 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_02879 PF01799 [2Fe-2S] binding domain DSM104443_02883 PF00263 Bacterial type II and III secretion system protein DSM104443_02883 PF03958 Bacterial type II/III secretion system short domain DSM104443_02884 PF00437 Type II/IV secretion system protein DSM104443_02885 PF00482 Type II secretion system (T2SS), protein F DSM104443_02886 PF07963 Prokaryotic N-terminal methylation motif DSM104443_02886 PF08334 Type II secretion system (T2SS), protein G DSM104443_02887 PF08334 Type II secretion system (T2SS), protein G DSM104443_02887 PF07963 Prokaryotic N-terminal methylation motif DSM104443_02888 PF07963 Prokaryotic N-terminal methylation motif DSM104443_02888 PF02501 Type II secretion system (T2SS), protein I DSM104443_02889 PF07963 Prokaryotic N-terminal methylation motif DSM104443_02889 PF11612 Type II secretion system (T2SS), protein J DSM104443_02890 PF03934 Type II secretion system (T2SS), protein K DSM104443_02894 PF00561 alpha/beta hydrolase fold DSM104443_02895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DSM104443_02895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DSM104443_02895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DSM104443_02895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DSM104443_02896 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_02896 PF00072 Response regulator receiver domain DSM104443_02899 PF00561 alpha/beta hydrolase fold DSM104443_02902 PF18029 Glyoxalase-like domain DSM104443_02905 PF11737 Protein of unknown function (DUF3300) DSM104443_02908 PF16658 Class II release factor RF3, C-terminal domain DSM104443_02908 PF00009 Elongation factor Tu GTP binding domain DSM104443_02908 PF03144 Elongation factor Tu domain 2 DSM104443_02912 PF01979 Amidohydrolase family DSM104443_02913 PF01380 SIS domain DSM104443_02914 PF07702 UTRA domain DSM104443_02914 PF00392 Bacterial regulatory proteins, gntR family DSM104443_02916 PF02838 Glycosyl hydrolase family 20, domain 2 DSM104443_02916 PF00728 Glycosyl hydrolase family 20, catalytic domain DSM104443_02916 PF07691 PA14 domain DSM104443_02917 PF05524 PEP-utilising enzyme, N-terminal DSM104443_02917 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DSM104443_02917 PF00381 PTS HPr component phosphorylation site DSM104443_02917 PF00391 PEP-utilising enzyme, mobile domain DSM104443_02917 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104443_02918 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DSM104443_02918 PF02378 Phosphotransferase system, EIIC DSM104443_02918 PF00367 phosphotransferase system, EIIB DSM104443_02922 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_02922 PF13417 Glutathione S-transferase, N-terminal domain DSM104443_02923 PF03061 Thioesterase superfamily DSM104443_02927 PF00293 NUDIX domain DSM104443_02928 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_02928 PF14497 Glutathione S-transferase, C-terminal domain DSM104443_02929 PF04542 Sigma-70 region 2 DSM104443_02929 PF08281 Sigma-70, region 4 DSM104443_02934 PF01545 Cation efflux family DSM104443_02935 PF04945 YHS domain DSM104443_02937 PF00664 ABC transporter transmembrane region DSM104443_02937 PF00005 ABC transporter DSM104443_02940 PF00144 Beta-lactamase DSM104443_02943 PF04264 YceI-like domain DSM104443_02945 PF01625 Peptide methionine sulfoxide reductase DSM104443_02946 PF09997 Predicted membrane protein (DUF2238) DSM104443_02947 PF00480 ROK family DSM104443_02949 PF00005 ABC transporter DSM104443_02950 PF02653 Branched-chain amino acid transport system / permease component DSM104443_02951 PF13458 Periplasmic binding protein DSM104443_02954 PF01425 Amidase DSM104443_02956 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_02956 PF00563 EAL domain DSM104443_02956 PF03707 Bacterial signalling protein N terminal repeat DSM104443_02958 PF01425 Amidase DSM104443_02959 PF03928 Haem-degrading DSM104443_02960 PF03741 Integral membrane protein TerC family DSM104443_02962 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_02963 PF02600 Disulfide bond formation protein DsbB DSM104443_02964 PF16655 PhoD-like phosphatase, N-terminal domain DSM104443_02964 PF09423 PhoD-like phosphatase DSM104443_02967 PF00106 short chain dehydrogenase DSM104443_02970 PF01638 HxlR-like helix-turn-helix DSM104443_02971 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_02971 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_02978 PF01979 Amidohydrolase family DSM104443_02981 PF02705 K+ potassium transporter DSM104443_02984 PF02586 SOS response associated peptidase (SRAP) DSM104443_02986 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_02986 PF03466 LysR substrate binding domain DSM104443_02990 PF12833 Helix-turn-helix domain DSM104443_02990 PF12852 Cupin DSM104443_02992 PF00871 Acetokinase family DSM104443_02993 PF09364 XFP N-terminal domain DSM104443_02993 PF09363 XFP C-terminal domain DSM104443_02993 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DSM104443_02994 PF00923 Transaldolase/Fructose-6-phosphate aldolase DSM104443_02995 PF01061 ABC-2 type transporter DSM104443_02996 PF00005 ABC transporter DSM104443_02997 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_02999 PF00561 alpha/beta hydrolase fold DSM104443_03000 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_03000 PF00107 Zinc-binding dehydrogenase DSM104443_03003 PF00005 ABC transporter DSM104443_03004 PF00005 ABC transporter DSM104443_03004 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_03006 PF02653 Branched-chain amino acid transport system / permease component DSM104443_03009 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DSM104443_03010 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DSM104443_03012 PF01039 Carboxyl transferase domain DSM104443_03013 PF06857 Malonate decarboxylase delta subunit (MdcD) DSM104443_03014 PF16957 Malonate decarboxylase, alpha subunit, transporter DSM104443_03015 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03016 PF07729 FCD domain DSM104443_03016 PF00392 Bacterial regulatory proteins, gntR family DSM104443_03017 PF02548 Ketopantoate hydroxymethyltransferase DSM104443_03020 PF01132 Elongation factor P (EF-P) OB domain DSM104443_03020 PF09285 Elongation factor P, C-terminal DSM104443_03020 PF08207 Elongation factor P (EF-P) KOW-like domain DSM104443_03023 PF02321 Outer membrane efflux protein DSM104443_03024 PF00873 AcrB/AcrD/AcrF family DSM104443_03025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_03025 PF00529 HlyD membrane-fusion protein of T1SS DSM104443_03026 PF08361 MAATS-type transcriptional repressor, C-terminal region DSM104443_03026 PF00440 Bacterial regulatory proteins, tetR family DSM104443_03027 PF13302 Acetyltransferase (GNAT) domain DSM104443_03028 PF00561 alpha/beta hydrolase fold DSM104443_03031 PF10091 Putative glucoamylase DSM104443_03031 PF06165 Glycosyltransferase family 36 DSM104443_03031 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DSM104443_03032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03032 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03032 PF00989 PAS fold DSM104443_03047 PF13180 PDZ domain DSM104443_03047 PF17820 PDZ domain DSM104443_03048 PF00313 'Cold-shock' DNA-binding domain DSM104443_03052 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03052 PF00114 Pilin (bacterial filament) DSM104443_03053 PF01336 OB-fold nucleic acid binding domain DSM104443_03053 PF00152 tRNA synthetases class II (D, K and N) DSM104443_03054 PF00563 EAL domain DSM104443_03054 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03054 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03057 PF00873 AcrB/AcrD/AcrF family DSM104443_03058 PF13533 Biotin-lipoyl like DSM104443_03059 PF07690 Major Facilitator Superfamily DSM104443_03061 PF13091 PLD-like domain DSM104443_03061 PF13396 Phospholipase_D-nuclease N-terminal DSM104443_03062 PF13472 GDSL-like Lipase/Acylhydrolase family DSM104443_03064 PF00072 Response regulator receiver domain DSM104443_03064 PF00196 Bacterial regulatory proteins, luxR family DSM104443_03065 PF13185 GAF domain DSM104443_03065 PF13492 GAF domain DSM104443_03065 PF07730 Histidine kinase DSM104443_03065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03066 PF07690 Major Facilitator Superfamily DSM104443_03068 PF07152 YaeQ protein DSM104443_03070 PF01717 Cobalamin-independent synthase, Catalytic domain DSM104443_03070 PF08267 Cobalamin-independent synthase, N-terminal domain DSM104443_03071 PF03466 LysR substrate binding domain DSM104443_03071 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03072 PF08281 Sigma-70, region 4 DSM104443_03072 PF04542 Sigma-70 region 2 DSM104443_03074 PF03795 YCII-related domain DSM104443_03076 PF03795 YCII-related domain DSM104443_03081 PF12146 Serine aminopeptidase, S33 DSM104443_03082 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03084 PF07694 5TMR of 5TMR-LYT DSM104443_03084 PF06580 Histidine kinase DSM104443_03085 PF04397 LytTr DNA-binding domain DSM104443_03085 PF00072 Response regulator receiver domain DSM104443_03088 PF13298 DNA polymerase Ligase (LigD) DSM104443_03088 PF01068 ATP dependent DNA ligase domain DSM104443_03088 PF04679 ATP dependent DNA ligase C terminal region DSM104443_03089 PF02735 Ku70/Ku80 beta-barrel domain DSM104443_03097 PF00440 Bacterial regulatory proteins, tetR family DSM104443_03098 PF13533 Biotin-lipoyl like DSM104443_03099 PF00873 AcrB/AcrD/AcrF family DSM104443_03101 PF02321 Outer membrane efflux protein DSM104443_03103 PF03466 LysR substrate binding domain DSM104443_03103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03104 PF02525 Flavodoxin-like fold DSM104443_03108 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_03108 PF05362 Lon protease (S16) C-terminal proteolytic domain DSM104443_03108 PF02190 ATP-dependent protease La (LON) substrate-binding domain DSM104443_03112 PF02622 Uncharacterized ACR, COG1678 DSM104443_03115 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03116 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03117 PF00465 Iron-containing alcohol dehydrogenase DSM104443_03118 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104443_03119 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_03119 PF03737 Aldolase/RraA DSM104443_03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03120 PF03466 LysR substrate binding domain DSM104443_03122 PF00892 EamA-like transporter family DSM104443_03123 PF02566 OsmC-like protein DSM104443_03125 PF00271 Helicase conserved C-terminal domain DSM104443_03125 PF00270 DEAD/DEAH box helicase DSM104443_03125 PF03880 DbpA RNA binding domain DSM104443_03127 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_03128 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03129 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03130 PF00005 ABC transporter DSM104443_03131 PF07687 Peptidase dimerisation domain DSM104443_03131 PF01546 Peptidase family M20/M25/M40 DSM104443_03132 PF01546 Peptidase family M20/M25/M40 DSM104443_03132 PF07687 Peptidase dimerisation domain DSM104443_03136 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DSM104443_03136 PF13378 Enolase C-terminal domain-like DSM104443_03137 PF02558 Ketopantoate reductase PanE/ApbA DSM104443_03137 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104443_03138 PF07715 TonB-dependent Receptor Plug Domain DSM104443_03138 PF00593 TonB dependent receptor DSM104443_03140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DSM104443_03140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104443_03141 PF03450 CO dehydrogenase flavoprotein C-terminal domain DSM104443_03141 PF00941 FAD binding domain in molybdopterin dehydrogenase DSM104443_03142 PF01799 [2Fe-2S] binding domain DSM104443_03142 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_03142 PF10518 TAT (twin-arginine translocation) pathway signal sequence DSM104443_03143 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_03143 PF01434 Peptidase family M41 DSM104443_03143 PF17862 AAA+ lid domain DSM104443_03144 PF01139 tRNA-splicing ligase RtcB DSM104443_03146 PF13439 Glycosyltransferase Family 4 DSM104443_03146 PF00534 Glycosyl transferases group 1 DSM104443_03147 PF03358 NADPH-dependent FMN reductase DSM104443_03149 PF00266 Aminotransferase class-V DSM104443_03152 PF01037 Lrp/AsnC ligand binding domain DSM104443_03153 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03154 PF00206 Lyase DSM104443_03154 PF14698 Argininosuccinate lyase C-terminal DSM104443_03155 PF00267 Gram-negative porin DSM104443_03156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03156 PF03466 LysR substrate binding domain DSM104443_03159 PF01638 HxlR-like helix-turn-helix DSM104443_03160 PF05726 Pirin C-terminal cupin domain DSM104443_03160 PF02678 Pirin DSM104443_03162 PF00378 Enoyl-CoA hydratase/isomerase DSM104443_03164 PF01556 DnaJ C terminal domain DSM104443_03164 PF00226 DnaJ domain DSM104443_03166 PF00248 Aldo/keto reductase family DSM104443_03167 PF01522 Polysaccharide deacetylase DSM104443_03168 PF07687 Peptidase dimerisation domain DSM104443_03168 PF01546 Peptidase family M20/M25/M40 DSM104443_03170 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03175 PF00135 Carboxylesterase family DSM104443_03177 PF00501 AMP-binding enzyme DSM104443_03177 PF13193 AMP-binding enzyme C-terminal domain DSM104443_03179 PF00135 Carboxylesterase family DSM104443_03180 PF13458 Periplasmic binding protein DSM104443_03181 PF02653 Branched-chain amino acid transport system / permease component DSM104443_03183 PF00005 ABC transporter DSM104443_03183 PF12399 Branched-chain amino acid ATP-binding cassette transporter DSM104443_03184 PF00005 ABC transporter DSM104443_03185 PF00106 short chain dehydrogenase DSM104443_03186 PF00672 HAMP domain DSM104443_03186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DSM104443_03186 PF02203 Tar ligand binding domain homologue DSM104443_03190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DSM104443_03190 PF12833 Helix-turn-helix domain DSM104443_03194 PF00085 Thioredoxin DSM104443_03204 PF00268 Ribonucleotide reductase, small chain DSM104443_03208 PF02867 Ribonucleotide reductase, barrel domain DSM104443_03208 PF03477 ATP cone domain DSM104443_03208 PF00317 Ribonucleotide reductase, all-alpha domain DSM104443_03209 PF01276 Orn/Lys/Arg decarboxylase, major domain DSM104443_03209 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DSM104443_03209 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DSM104443_03210 PF06826 Predicted Permease Membrane Region DSM104443_03210 PF02080 TrkA-C domain DSM104443_03211 PF01177 Asp/Glu/Hydantoin racemase DSM104443_03214 PF02321 Outer membrane efflux protein DSM104443_03215 PF00873 AcrB/AcrD/AcrF family DSM104443_03216 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DSM104443_03217 PF01510 N-acetylmuramoyl-L-alanine amidase DSM104443_03218 PF02954 Bacterial regulatory protein, Fis family DSM104443_03218 PF00158 Sigma-54 interaction domain DSM104443_03218 PF00072 Response regulator receiver domain DSM104443_03219 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03222 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03222 PF00072 Response regulator receiver domain DSM104443_03227 PF00348 Polyprenyl synthetase DSM104443_03228 PF00829 Ribosomal prokaryotic L21 protein DSM104443_03229 PF01016 Ribosomal L27 protein DSM104443_03230 PF01810 LysE type translocator DSM104443_03231 PF01926 50S ribosome-binding GTPase DSM104443_03231 PF01018 GTP1/OBG DSM104443_03232 PF00696 Amino acid kinase family DSM104443_03232 PF01472 PUA domain DSM104443_03237 PF00293 NUDIX domain DSM104443_03238 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DSM104443_03238 PF04073 Aminoacyl-tRNA editing domain DSM104443_03238 PF03129 Anticodon binding domain DSM104443_03239 PF13302 Acetyltransferase (GNAT) domain DSM104443_03239 PF00117 Glutamine amidotransferase class-I DSM104443_03239 PF00958 GMP synthase C terminal domain DSM104443_03239 PF03352 Methyladenine glycosylase DSM104443_03239 PF13673 Acetyltransferase (GNAT) domain DSM104443_03240 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DSM104443_03240 PF01464 Transglycosylase SLT domain DSM104443_03241 PF00578 AhpC/TSA family DSM104443_03243 PF03631 Virulence factor BrkB DSM104443_03244 PF03358 NADPH-dependent FMN reductase DSM104443_03247 PF09335 SNARE associated Golgi protein DSM104443_03248 PF02355 Protein export membrane protein DSM104443_03248 PF07549 SecD/SecF GG Motif DSM104443_03249 PF13721 SecD export protein N-terminal TM region DSM104443_03249 PF07549 SecD/SecF GG Motif DSM104443_03249 PF02355 Protein export membrane protein DSM104443_03250 PF02699 Preprotein translocase subunit DSM104443_03251 PF01702 Queuine tRNA-ribosyltransferase DSM104443_03253 PF03030 Inorganic H+ pyrophosphatase DSM104443_03254 PF00365 Phosphofructokinase DSM104443_03255 PF05191 Adenylate kinase, active site lid DSM104443_03257 PF02348 Cytidylyltransferase DSM104443_03258 PF03966 Trm112p-like protein DSM104443_03259 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DSM104443_03260 PF02472 Biopolymer transport protein ExbD/TolR DSM104443_03262 PF13742 OB-fold nucleic acid binding domain DSM104443_03262 PF02601 Exonuclease VII, large subunit DSM104443_03263 PF07311 Dodecin DSM104443_03265 PF08676 MutL C terminal dimerisation domain DSM104443_03265 PF01119 DNA mismatch repair protein, C-terminal domain DSM104443_03266 PF00563 EAL domain DSM104443_03266 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03266 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03267 PF11741 AMIN domain DSM104443_03267 PF01520 N-acetylmuramoyl-L-alanine amidase DSM104443_03268 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DSM104443_03269 PF08331 Domain of unknown function (DUF1730) DSM104443_03274 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03274 PF00563 EAL domain DSM104443_03274 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03274 PF13188 PAS domain DSM104443_03275 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03275 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03275 PF00563 EAL domain DSM104443_03277 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_03277 PF00672 HAMP domain DSM104443_03280 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03281 PF08402 TOBE domain DSM104443_03281 PF00005 ABC transporter DSM104443_03283 PF07995 Glucose / Sorbosone dehydrogenase DSM104443_03285 PF17831 Pyruvate dehydrogenase E1 component middle domain DSM104443_03285 PF00456 Transketolase, thiamine diphosphate binding domain DSM104443_03287 PF12849 PBP superfamily domain DSM104443_03288 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03289 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03290 PF00005 ABC transporter DSM104443_03292 PF01219 Prokaryotic diacylglycerol kinase DSM104443_03293 PF13439 Glycosyltransferase Family 4 DSM104443_03293 PF00534 Glycosyl transferases group 1 DSM104443_03296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03296 PF11808 Phosphate regulon sensor protein PhoR DSM104443_03296 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03296 PF00989 PAS fold DSM104443_03297 PF00072 Response regulator receiver domain DSM104443_03297 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03298 PF01895 PhoU domain DSM104443_03300 PF03631 Virulence factor BrkB DSM104443_03301 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104443_03301 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104443_03301 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_03305 PF00005 ABC transporter DSM104443_03306 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03307 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03309 PF03814 Potassium-transporting ATPase A subunit DSM104443_03311 PF02669 K+-transporting ATPase, c chain DSM104443_03312 PF02702 Osmosensitive K+ channel His kinase sensor domain DSM104443_03312 PF13492 GAF domain DSM104443_03312 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03312 PF13493 Domain of unknown function (DUF4118) DSM104443_03312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03313 PF00072 Response regulator receiver domain DSM104443_03313 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03315 PF01699 Sodium/calcium exchanger protein DSM104443_03316 PF03449 Transcription elongation factor, N-terminal DSM104443_03316 PF01272 Transcription elongation factor, GreA/GreB, C-term DSM104443_03317 PF01914 MarC family integral membrane protein DSM104443_03319 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_03320 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03323 PF08241 Methyltransferase domain DSM104443_03324 PF04977 Septum formation initiator DSM104443_03325 PF03952 Enolase, N-terminal domain DSM104443_03325 PF00113 Enolase, C-terminal TIM barrel domain DSM104443_03331 PF00883 Cytosol aminopeptidase family, catalytic domain DSM104443_03331 PF02789 Cytosol aminopeptidase family, N-terminal domain DSM104443_03335 PF07715 TonB-dependent Receptor Plug Domain DSM104443_03335 PF00593 TonB dependent receptor DSM104443_03341 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DSM104443_03342 PF01799 [2Fe-2S] binding domain DSM104443_03342 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_03344 PF05199 GMC oxidoreductase DSM104443_03344 PF00732 GMC oxidoreductase DSM104443_03351 PF02558 Ketopantoate reductase PanE/ApbA DSM104443_03351 PF08546 Ketopantoate reductase PanE/ApbA C terminal DSM104443_03352 PF00793 DAHP synthetase I family DSM104443_03353 PF00117 Glutamine amidotransferase class-I DSM104443_03353 PF06418 CTP synthase N-terminus DSM104443_03355 PF01008 Initiation factor 2 subunit family DSM104443_03356 PF04349 Periplasmic glucan biosynthesis protein, MdoG DSM104443_03357 PF00535 Glycosyl transferase family 2 DSM104443_03358 PF00578 AhpC/TSA family DSM104443_03360 PF00171 Aldehyde dehydrogenase family DSM104443_03362 PF01266 FAD dependent oxidoreductase DSM104443_03363 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DSM104443_03363 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DSM104443_03365 PF00581 Rhodanese-like domain DSM104443_03368 PF01546 Peptidase family M20/M25/M40 DSM104443_03368 PF07687 Peptidase dimerisation domain DSM104443_03373 PF01370 NAD dependent epimerase/dehydratase family DSM104443_03379 PF01042 Endoribonuclease L-PSP DSM104443_03381 PF13291 ACT domain DSM104443_03381 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_03385 PF00342 Phosphoglucose isomerase DSM104443_03386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03386 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03386 PF01627 Hpt domain DSM104443_03386 PF00072 Response regulator receiver domain DSM104443_03386 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DSM104443_03386 PF00672 HAMP domain DSM104443_03387 PF01544 CorA-like Mg2+ transporter protein DSM104443_03389 PF01266 FAD dependent oxidoreductase DSM104443_03389 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DSM104443_03391 PF00361 Proton-conducting membrane transporter DSM104443_03392 PF00361 Proton-conducting membrane transporter DSM104443_03392 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DSM104443_03393 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DSM104443_03393 PF00361 Proton-conducting membrane transporter DSM104443_03394 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DSM104443_03395 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DSM104443_03396 PF12838 4Fe-4S dicluster domain DSM104443_03397 PF00146 NADH dehydrogenase DSM104443_03398 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DSM104443_03398 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104443_03398 PF00384 Molybdopterin oxidoreductase DSM104443_03399 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104443_03399 PF10531 SLBB domain DSM104443_03399 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104443_03402 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DSM104443_03403 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DSM104443_03404 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DSM104443_03405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DSM104443_03407 PF03840 Preprotein translocase SecG subunit DSM104443_03408 PF00121 Triosephosphate isomerase DSM104443_03410 PF01565 FAD binding domain DSM104443_03410 PF08031 Berberine and berberine like DSM104443_03412 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DSM104443_03412 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DSM104443_03412 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DSM104443_03412 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DSM104443_03413 PF00809 Pterin binding enzyme DSM104443_03414 PF06480 FtsH Extracellular DSM104443_03414 PF01434 Peptidase family M41 DSM104443_03414 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_03414 PF17862 AAA+ lid domain DSM104443_03415 PF01728 FtsJ-like methyltransferase DSM104443_03416 PF01985 CRS1 / YhbY (CRM) domain DSM104443_03417 PF03449 Transcription elongation factor, N-terminal DSM104443_03417 PF01272 Transcription elongation factor, GreA/GreB, C-term DSM104443_03418 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104443_03418 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DSM104443_03418 PF02142 MGS-like domain DSM104443_03419 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DSM104443_03419 PF00117 Glutamine amidotransferase class-I DSM104443_03420 PF05173 Dihydrodipicolinate reductase, C-terminus DSM104443_03420 PF01113 Dihydrodipicolinate reductase, N-terminus DSM104443_03421 PF04355 SmpA / OmlA family DSM104443_03422 PF01475 Ferric uptake regulator family DSM104443_03424 PF00545 ribonuclease DSM104443_03426 PF00171 Aldehyde dehydrogenase family DSM104443_03426 PF14850 DNA-binding domain of Proline dehydrogenase DSM104443_03426 PF01619 Proline dehydrogenase DSM104443_03426 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DSM104443_03427 PF00085 Thioredoxin DSM104443_03428 PF00210 Ferritin-like domain DSM104443_03430 PF05726 Pirin C-terminal cupin domain DSM104443_03430 PF02678 Pirin DSM104443_03431 PF07681 DoxX DSM104443_03432 PF02678 Pirin DSM104443_03432 PF17954 Quercetinase C-terminal cupin domain DSM104443_03433 PF03466 LysR substrate binding domain DSM104443_03433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03434 PF00749 tRNA synthetases class I (E and Q), catalytic domain DSM104443_03436 PF00873 AcrB/AcrD/AcrF family DSM104443_03439 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03440 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_03441 PF01970 Tripartite tricarboxylate transporter TctA family DSM104443_03443 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03444 PF00180 Isocitrate/isopropylmalate dehydrogenase DSM104443_03445 PF00561 alpha/beta hydrolase fold DSM104443_03446 PF00501 AMP-binding enzyme DSM104443_03446 PF13193 AMP-binding enzyme C-terminal domain DSM104443_03448 PF03793 PASTA domain DSM104443_03448 PF00069 Protein kinase domain DSM104443_03450 PF01479 S4 domain DSM104443_03454 PF01161 Phosphatidylethanolamine-binding protein DSM104443_03455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DSM104443_03455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DSM104443_03457 PF00171 Aldehyde dehydrogenase family DSM104443_03458 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_03459 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03459 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03459 PF00563 EAL domain DSM104443_03460 PF00672 HAMP domain DSM104443_03460 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_03463 PF01040 UbiA prenyltransferase family DSM104443_03464 PF01565 FAD binding domain DSM104443_03464 PF04030 D-arabinono-1,4-lactone oxidase DSM104443_03468 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_03471 PF12852 Cupin DSM104443_03471 PF12833 Helix-turn-helix domain DSM104443_03472 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DSM104443_03474 PF04209 homogentisate 1,2-dioxygenase DSM104443_03475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DSM104443_03476 PF01037 Lrp/AsnC ligand binding domain DSM104443_03478 PF01411 tRNA synthetases class II (A) DSM104443_03478 PF02272 DHHA1 domain DSM104443_03478 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DSM104443_03479 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DSM104443_03480 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03481 PF12911 N-terminal TM domain of oligopeptide transport permease C DSM104443_03481 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03484 PF00005 ABC transporter DSM104443_03484 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_03485 PF00005 ABC transporter DSM104443_03485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DSM104443_03486 PF03707 Bacterial signalling protein N terminal repeat DSM104443_03486 PF00563 EAL domain DSM104443_03486 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03487 PF00082 Subtilase family DSM104443_03487 PF05922 Peptidase inhibitor I9 DSM104443_03491 PF00360 Phytochrome region DSM104443_03491 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_03491 PF01590 GAF domain DSM104443_03491 PF00563 EAL domain DSM104443_03493 PF00271 Helicase conserved C-terminal domain DSM104443_03493 PF00270 DEAD/DEAH box helicase DSM104443_03493 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DSM104443_03493 PF11898 Domain of unknown function (DUF3418) DSM104443_03493 PF04408 Helicase associated domain (HA2) DSM104443_03496 PF08281 Sigma-70, region 4 DSM104443_03496 PF04542 Sigma-70 region 2 DSM104443_03497 PF01810 LysE type translocator DSM104443_03501 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_03501 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_03502 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DSM104443_03502 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DSM104443_03503 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DSM104443_03503 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSM104443_03504 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_03504 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DSM104443_03506 PF03480 Bacterial extracellular solute-binding protein, family 7 DSM104443_03508 PF02589 LUD domain DSM104443_03509 PF02589 LUD domain DSM104443_03509 PF13183 4Fe-4S dicluster domain DSM104443_03509 PF11870 Domain of unknown function (DUF3390) DSM104443_03510 PF02754 Cysteine-rich domain DSM104443_03511 PF01717 Cobalamin-independent synthase, Catalytic domain DSM104443_03511 PF08267 Cobalamin-independent synthase, N-terminal domain DSM104443_03513 PF00768 D-alanyl-D-alanine carboxypeptidase DSM104443_03514 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104443_03515 PF00561 alpha/beta hydrolase fold DSM104443_03517 PF00005 ABC transporter DSM104443_03517 PF00664 ABC transporter transmembrane region DSM104443_03518 PF03079 ARD/ARD' family DSM104443_03520 PF01261 Xylose isomerase-like TIM barrel DSM104443_03521 PF17820 PDZ domain DSM104443_03521 PF13180 PDZ domain DSM104443_03528 PF01168 Alanine racemase, N-terminal domain DSM104443_03528 PF14031 Putative serine dehydratase domain DSM104443_03530 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03532 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DSM104443_03532 PF01568 Molydopterin dinucleotide binding domain DSM104443_03532 PF00384 Molybdopterin oxidoreductase DSM104443_03532 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DSM104443_03532 PF12838 4Fe-4S dicluster domain DSM104443_03533 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DSM104443_03533 PF10531 SLBB domain DSM104443_03533 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DSM104443_03534 PF01494 FAD binding domain DSM104443_03536 PF00549 CoA-ligase DSM104443_03536 PF02629 CoA binding domain DSM104443_03537 PF00549 CoA-ligase DSM104443_03537 PF08442 ATP-grasp domain DSM104443_03538 PF01638 HxlR-like helix-turn-helix DSM104443_03539 PF08031 Berberine and berberine like DSM104443_03539 PF01565 FAD binding domain DSM104443_03541 PF00069 Protein kinase domain DSM104443_03541 PF03793 PASTA domain DSM104443_03542 PF02423 Ornithine cyclodeaminase/mu-crystallin family DSM104443_03546 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_03546 PF00107 Zinc-binding dehydrogenase DSM104443_03547 PF00551 Formyl transferase DSM104443_03547 PF02911 Formyl transferase, C-terminal domain DSM104443_03550 PF02515 CoA-transferase family III DSM104443_03551 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DSM104443_03551 PF00205 Thiamine pyrophosphate enzyme, central domain DSM104443_03551 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DSM104443_03554 PF01970 Tripartite tricarboxylate transporter TctA family DSM104443_03557 PF03741 Integral membrane protein TerC family DSM104443_03558 PF01464 Transglycosylase SLT domain DSM104443_03558 PF14718 Soluble lytic murein transglycosylase L domain DSM104443_03559 PF01370 NAD dependent epimerase/dehydratase family DSM104443_03560 PF12627 Probable RNA and SrmB- binding site of polymerase A DSM104443_03560 PF01743 Poly A polymerase head domain DSM104443_03560 PF01966 HD domain DSM104443_03562 PF16868 NMT1-like family DSM104443_03563 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DSM104443_03563 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DSM104443_03563 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DSM104443_03564 PF02233 NAD(P) transhydrogenase beta subunit DSM104443_03567 PF01171 PP-loop family DSM104443_03568 PF00266 Aminotransferase class-V DSM104443_03570 PF13181 Tetratricopeptide repeat DSM104443_03570 PF01435 Peptidase family M48 DSM104443_03573 PF02219 Methylenetetrahydrofolate reductase DSM104443_03575 PF05221 S-adenosyl-L-homocysteine hydrolase DSM104443_03575 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DSM104443_03576 PF13417 Glutathione S-transferase, N-terminal domain DSM104443_03577 PF00438 S-adenosylmethionine synthetase, N-terminal domain DSM104443_03577 PF02772 S-adenosylmethionine synthetase, central domain DSM104443_03577 PF02773 S-adenosylmethionine synthetase, C-terminal domain DSM104443_03579 PF03279 Bacterial lipid A biosynthesis acyltransferase DSM104443_03580 PF01678 Diaminopimelate epimerase DSM104443_03582 PF02899 Phage integrase, N-terminal SAM-like domain DSM104443_03582 PF00589 Phage integrase family DSM104443_03583 PF07683 Cobalamin synthesis protein cobW C-terminal domain DSM104443_03583 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104443_03584 PF02492 CobW/HypB/UreG, nucleotide-binding domain DSM104443_03584 PF07683 Cobalamin synthesis protein cobW C-terminal domain DSM104443_03585 PF00005 ABC transporter DSM104443_03589 PF00227 Proteasome subunit DSM104443_03590 PF10431 C-terminal, D2-small domain, of ClpB protein DSM104443_03590 PF00004 ATPase family associated with various cellular activities (AAA) DSM104443_03590 PF07724 AAA domain (Cdc48 subfamily) DSM104443_03594 PF05114 Protein of unknown function (DUF692) DSM104443_03599 PF00011 Hsp20/alpha crystallin family DSM104443_03600 PF00696 Amino acid kinase family DSM104443_03601 PF03372 Endonuclease/Exonuclease/phosphatase family DSM104443_03602 PF00293 NUDIX domain DSM104443_03603 PF01112 Asparaginase DSM104443_03604 PF01336 OB-fold nucleic acid binding domain DSM104443_03604 PF00152 tRNA synthetases class II (D, K and N) DSM104443_03604 PF02938 GAD domain DSM104443_03608 PF01435 Peptidase family M48 DSM104443_03613 PF00436 Single-strand binding protein family DSM104443_03614 PF07690 Major Facilitator Superfamily DSM104443_03615 PF17755 UvrA DNA-binding domain DSM104443_03615 PF17760 UvrA interaction domain DSM104443_03618 PF13660 Domain of unknown function (DUF4147) DSM104443_03618 PF05161 MOFRL family DSM104443_03619 PF01196 Ribosomal protein L17 DSM104443_03620 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DSM104443_03620 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DSM104443_03620 PF01000 RNA polymerase Rpb3/RpoA insert domain DSM104443_03621 PF00163 Ribosomal protein S4/S9 N-terminal domain DSM104443_03621 PF01479 S4 domain DSM104443_03622 PF00411 Ribosomal protein S11 DSM104443_03623 PF00416 Ribosomal protein S13/S18 DSM104443_03624 PF00444 Ribosomal protein L36 DSM104443_03625 PF01176 Translation initiation factor 1A / IF-1 DSM104443_03626 PF00344 SecY translocase DSM104443_03627 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DSM104443_03628 PF00327 Ribosomal protein L30p/L7e DSM104443_03629 PF00333 Ribosomal protein S5, N-terminal domain DSM104443_03629 PF03719 Ribosomal protein S5, C-terminal domain DSM104443_03630 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DSM104443_03631 PF00347 Ribosomal protein L6 DSM104443_03632 PF00410 Ribosomal protein S8 DSM104443_03633 PF00253 Ribosomal protein S14p/S29e DSM104443_03634 PF00281 Ribosomal protein L5 DSM104443_03634 PF00673 ribosomal L5P family C-terminus DSM104443_03635 PF00467 KOW motif DSM104443_03635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DSM104443_03636 PF00238 Ribosomal protein L14p/L23e DSM104443_03637 PF00366 Ribosomal protein S17 DSM104443_03638 PF00831 Ribosomal L29 protein DSM104443_03639 PF00252 Ribosomal protein L16p/L10e DSM104443_03640 PF00189 Ribosomal protein S3, C-terminal domain DSM104443_03640 PF07650 KH domain DSM104443_03641 PF00237 Ribosomal protein L22p/L17e DSM104443_03642 PF00203 Ribosomal protein S19 DSM104443_03643 PF00181 Ribosomal Proteins L2, RNA binding domain DSM104443_03643 PF03947 Ribosomal Proteins L2, C-terminal domain DSM104443_03644 PF00276 Ribosomal protein L23 DSM104443_03645 PF00573 Ribosomal protein L4/L1 family DSM104443_03646 PF00297 Ribosomal protein L3 DSM104443_03647 PF00338 Ribosomal protein S10p/S20e DSM104443_03648 PF03144 Elongation factor Tu domain 2 DSM104443_03648 PF03143 Elongation factor Tu C-terminal domain DSM104443_03648 PF00009 Elongation factor Tu GTP binding domain DSM104443_03649 PF00679 Elongation factor G C-terminus DSM104443_03649 PF14492 Elongation Factor G, domain II DSM104443_03649 PF03764 Elongation factor G, domain IV DSM104443_03649 PF00009 Elongation factor Tu GTP binding domain DSM104443_03649 PF03144 Elongation factor Tu domain 2 DSM104443_03650 PF00177 Ribosomal protein S7p/S5e DSM104443_03651 PF00164 Ribosomal protein S12/S23 DSM104443_03652 PF05000 RNA polymerase Rpb1, domain 4 DSM104443_03652 PF00623 RNA polymerase Rpb1, domain 2 DSM104443_03652 PF04998 RNA polymerase Rpb1, domain 5 DSM104443_03652 PF04983 RNA polymerase Rpb1, domain 3 DSM104443_03652 PF04997 RNA polymerase Rpb1, domain 1 DSM104443_03653 PF04561 RNA polymerase Rpb2, domain 2 DSM104443_03653 PF04565 RNA polymerase Rpb2, domain 3 DSM104443_03653 PF10385 RNA polymerase beta subunit external 1 domain DSM104443_03653 PF00562 RNA polymerase Rpb2, domain 6 DSM104443_03653 PF04560 RNA polymerase Rpb2, domain 7 DSM104443_03653 PF04563 RNA polymerase beta subunit DSM104443_03654 PF16320 Ribosomal protein L7/L12 dimerisation domain DSM104443_03654 PF00542 Ribosomal protein L7/L12 C-terminal domain DSM104443_03655 PF00466 Ribosomal protein L10 DSM104443_03656 PF00687 Ribosomal protein L1p/L10e family DSM104443_03657 PF00298 Ribosomal protein L11, RNA binding domain DSM104443_03657 PF03946 Ribosomal protein L11, N-terminal domain DSM104443_03658 PF00467 KOW motif DSM104443_03658 PF02357 Transcription termination factor nusG DSM104443_03659 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DSM104443_03661 PF00009 Elongation factor Tu GTP binding domain DSM104443_03661 PF03144 Elongation factor Tu domain 2 DSM104443_03661 PF03143 Elongation factor Tu C-terminal domain DSM104443_03666 PF04386 Stringent starvation protein B DSM104443_03667 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_03667 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_03668 PF02167 Cytochrome C1 family DSM104443_03669 PF00033 Cytochrome b/b6/petB DSM104443_03669 PF00032 Cytochrome b(C-terminal)/b6/petD DSM104443_03670 PF00355 Rieske [2Fe-2S] domain DSM104443_03670 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DSM104443_03671 PF01741 Large-conductance mechanosensitive channel, MscL DSM104443_03672 PF17820 PDZ domain DSM104443_03672 PF13180 PDZ domain DSM104443_03673 PF00902 Sec-independent protein translocase protein (TatC) DSM104443_03674 PF02416 mttA/Hcf106 family DSM104443_03675 PF02416 mttA/Hcf106 family DSM104443_03677 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DSM104443_03678 PF01502 Phosphoribosyl-AMP cyclohydrolase DSM104443_03679 PF00977 Histidine biosynthesis protein DSM104443_03680 PF00977 Histidine biosynthesis protein DSM104443_03681 PF00117 Glutamine amidotransferase class-I DSM104443_03682 PF00475 Imidazoleglycerol-phosphate dehydratase DSM104443_03683 PF00155 Aminotransferase class I and II DSM104443_03684 PF00815 Histidinol dehydrogenase DSM104443_03685 PF01634 ATP phosphoribosyltransferase DSM104443_03686 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DSM104443_03688 PF01061 ABC-2 type transporter DSM104443_03689 PF00005 ABC transporter DSM104443_03691 PF05494 MlaC protein DSM104443_03692 PF02470 MlaD protein DSM104443_03693 PF02405 Permease MlaE DSM104443_03694 PF00005 ABC transporter DSM104443_03695 PF02954 Bacterial regulatory protein, Fis family DSM104443_03695 PF00158 Sigma-54 interaction domain DSM104443_03695 PF00072 Response regulator receiver domain DSM104443_03696 PF13401 AAA domain DSM104443_03696 PF01471 Putative peptidoglycan binding domain DSM104443_03697 PF03958 Bacterial type II/III secretion system short domain DSM104443_03697 PF00263 Bacterial type II and III secretion system protein DSM104443_03699 PF00437 Type II/IV secretion system protein DSM104443_03699 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104443_03700 PF00482 Type II secretion system (T2SS), protein F DSM104443_03706 PF02649 Type I GTP cyclohydrolase folE2 DSM104443_03709 PF00691 OmpA family DSM104443_03710 PF04461 Protein of unknown function (DUF520) DSM104443_03713 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DSM104443_03713 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DSM104443_03714 PF00202 Aminotransferase class-III DSM104443_03715 PF01649 Ribosomal protein S20 DSM104443_03716 PF03023 Lipid II flippase MurJ DSM104443_03717 PF06574 FAD synthetase DSM104443_03717 PF01687 Riboflavin kinase DSM104443_03718 PF00133 tRNA synthetases class I (I, L, M and V) DSM104443_03718 PF08264 Anticodon-binding domain of tRNA DSM104443_03718 PF06827 Zinc finger found in FPG and IleRS DSM104443_03719 PF01252 Signal peptidase (SPase) II DSM104443_03720 PF02401 LytB protein DSM104443_03722 PF05567 Neisseria PilC beta-propeller domain DSM104443_03726 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03726 PF00114 Pilin (bacterial filament) DSM104443_03727 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03727 PF00114 Pilin (bacterial filament) DSM104443_03731 PF07043 Protein of unknown function (DUF1328) DSM104443_03734 PF00585 C-terminal regulatory domain of Threonine dehydratase DSM104443_03734 PF00291 Pyridoxal-phosphate dependent enzyme DSM104443_03735 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DSM104443_03736 PF04362 Bacterial Fe(2+) trafficking DSM104443_03737 PF00583 Acetyltransferase (GNAT) family DSM104443_03737 PF00696 Amino acid kinase family DSM104443_03738 PF04452 RNA methyltransferase DSM104443_03740 PF03738 Glutathionylspermidine synthase preATP-grasp DSM104443_03742 PF17284 Spermidine synthase tetramerisation domain DSM104443_03743 PF02675 S-adenosylmethionine decarboxylase DSM104443_03744 PF00456 Transketolase, thiamine diphosphate binding domain DSM104443_03744 PF02779 Transketolase, pyrimidine binding domain DSM104443_03744 PF02780 Transketolase, C-terminal domain DSM104443_03746 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DSM104443_03746 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DSM104443_03749 PF00162 Phosphoglycerate kinase DSM104443_03750 PF00224 Pyruvate kinase, barrel domain DSM104443_03750 PF02887 Pyruvate kinase, alpha/beta domain DSM104443_03753 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03754 PF01116 Fructose-bisphosphate aldolase class-II DSM104443_03755 PF01259 SAICAR synthetase DSM104443_03762 PF03741 Integral membrane protein TerC family DSM104443_03762 PF03471 Transporter associated domain DSM104443_03763 PF07687 Peptidase dimerisation domain DSM104443_03763 PF01546 Peptidase family M20/M25/M40 DSM104443_03764 PF01925 Sulfite exporter TauE/SafE DSM104443_03766 PF05164 Cell division protein ZapA DSM104443_03768 PF07715 TonB-dependent Receptor Plug Domain DSM104443_03768 PF00593 TonB dependent receptor DSM104443_03772 PF01370 NAD dependent epimerase/dehydratase family DSM104443_03772 PF00391 PEP-utilising enzyme, mobile domain DSM104443_03773 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DSM104443_03774 PF16363 GDP-mannose 4,6 dehydratase DSM104443_03775 PF00483 Nucleotidyl transferase DSM104443_03778 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DSM104443_03779 PF00534 Glycosyl transferases group 1 DSM104443_03780 PF00664 ABC transporter transmembrane region DSM104443_03780 PF00005 ABC transporter DSM104443_03781 PF13439 Glycosyltransferase Family 4 DSM104443_03781 PF00534 Glycosyl transferases group 1 DSM104443_03790 PF14524 Wzt C-terminal domain DSM104443_03790 PF00005 ABC transporter DSM104443_03792 PF01061 ABC-2 type transporter DSM104443_03794 PF13145 PPIC-type PPIASE domain DSM104443_03798 PF00263 Bacterial type II and III secretion system protein DSM104443_03798 PF03958 Bacterial type II/III secretion system short domain DSM104443_03802 PF03934 Type II secretion system (T2SS), protein K DSM104443_03803 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03803 PF11612 Type II secretion system (T2SS), protein J DSM104443_03804 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03805 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03805 PF12019 Type II transport protein GspH DSM104443_03806 PF07963 Prokaryotic N-terminal methylation motif DSM104443_03806 PF08334 Type II secretion system (T2SS), protein G DSM104443_03807 PF00482 Type II secretion system (T2SS), protein F DSM104443_03808 PF00437 Type II/IV secretion system protein DSM104443_03808 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DSM104443_03809 PF00909 Ammonium Transporter Family DSM104443_03810 PF00543 Nitrogen regulatory protein P-II DSM104443_03812 PF04380 Membrane fusogenic activity DSM104443_03813 PF01078 Magnesium chelatase, subunit ChlI DSM104443_03813 PF13335 Magnesium chelatase, subunit ChlI C-terminal DSM104443_03814 PF07690 Major Facilitator Superfamily DSM104443_03819 PF01546 Peptidase family M20/M25/M40 DSM104443_03819 PF07687 Peptidase dimerisation domain DSM104443_03820 PF01810 LysE type translocator DSM104443_03822 PF05995 Cysteine dioxygenase type I DSM104443_03823 PF02515 CoA-transferase family III DSM104443_03825 PF01425 Amidase DSM104443_03827 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_03828 PF00005 ABC transporter DSM104443_03830 PF01425 Amidase DSM104443_03832 PF00392 Bacterial regulatory proteins, gntR family DSM104443_03832 PF07729 FCD domain DSM104443_03839 PF01053 Cys/Met metabolism PLP-dependent enzyme DSM104443_03840 PF02310 B12 binding domain DSM104443_03840 PF02574 Homocysteine S-methyltransferase DSM104443_03840 PF02607 B12 binding domain DSM104443_03840 PF02965 Vitamin B12 dependent methionine synthase, activation domain DSM104443_03840 PF00809 Pterin binding enzyme DSM104443_03841 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DSM104443_03846 PF00043 Glutathione S-transferase, C-terminal domain DSM104443_03846 PF02798 Glutathione S-transferase, N-terminal domain DSM104443_03847 PF02954 Bacterial regulatory protein, Fis family DSM104443_03847 PF13185 GAF domain DSM104443_03847 PF00158 Sigma-54 interaction domain DSM104443_03848 PF10605 3HB-oligomer hydrolase (3HBOH) DSM104443_03852 PF02780 Transketolase, C-terminal domain DSM104443_03852 PF02779 Transketolase, pyrimidine binding domain DSM104443_03852 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DSM104443_03853 PF00348 Polyprenyl synthetase DSM104443_03854 PF02609 Exonuclease VII small subunit DSM104443_03859 PF14492 Elongation Factor G, domain II DSM104443_03859 PF03764 Elongation factor G, domain IV DSM104443_03859 PF03144 Elongation factor Tu domain 2 DSM104443_03859 PF00009 Elongation factor Tu GTP binding domain DSM104443_03859 PF00679 Elongation factor G C-terminus DSM104443_03866 PF00664 ABC transporter transmembrane region DSM104443_03866 PF00005 ABC transporter DSM104443_03866 PF03412 Peptidase C39 family DSM104443_03868 PF00892 EamA-like transporter family DSM104443_03869 PF00581 Rhodanese-like domain DSM104443_03870 PF00326 Prolyl oligopeptidase family DSM104443_03874 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03874 PF00072 Response regulator receiver domain DSM104443_03875 PF02660 Glycerol-3-phosphate acyltransferase DSM104443_03876 PF02152 Dihydroneopterin aldolase DSM104443_03879 PF04073 Aminoacyl-tRNA editing domain DSM104443_03881 PF02899 Phage integrase, N-terminal SAM-like domain DSM104443_03881 PF00589 Phage integrase family DSM104443_03882 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DSM104443_03882 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DSM104443_03883 PF02615 Malate/L-lactate dehydrogenase DSM104443_03884 PF02910 Fumarate reductase flavoprotein C-term DSM104443_03884 PF00890 FAD binding domain DSM104443_03888 PF02472 Biopolymer transport protein ExbD/TolR DSM104443_03889 PF01618 MotA/TolQ/ExbB proton channel family DSM104443_03890 PF03544 Gram-negative bacterial TonB protein C-terminal DSM104443_03891 PF05683 Fumarase C-terminus DSM104443_03892 PF05681 Fumarate hydratase (Fumerase) DSM104443_03893 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03896 PF13183 4Fe-4S dicluster domain DSM104443_03896 PF13085 2Fe-2S iron-sulfur cluster binding domain DSM104443_03897 PF03601 Conserved hypothetical protein 698 DSM104443_03898 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DSM104443_03899 PF08666 SAF domain DSM104443_03900 PF00392 Bacterial regulatory proteins, gntR family DSM104443_03900 PF07729 FCD domain DSM104443_03902 PF04228 Putative neutral zinc metallopeptidase DSM104443_03903 PF01245 Ribosomal protein L19 DSM104443_03904 PF01746 tRNA (Guanine-1)-methyltransferase DSM104443_03905 PF01782 RimM N-terminal domain DSM104443_03905 PF05239 PRC-barrel domain DSM104443_03906 PF00886 Ribosomal protein S16 DSM104443_03908 PF01546 Peptidase family M20/M25/M40 DSM104443_03908 PF07687 Peptidase dimerisation domain DSM104443_03910 PF04134 Protein of unknown function, DUF393 DSM104443_03912 PF00448 SRP54-type protein, GTPase domain DSM104443_03912 PF02881 SRP54-type protein, helical bundle domain DSM104443_03912 PF02978 Signal peptide binding domain DSM104443_03913 PF01578 Cytochrome C assembly protein DSM104443_03914 PF01595 Cyclin M transmembrane N-terminal domain DSM104443_03914 PF03471 Transporter associated domain DSM104443_03914 PF00571 CBS domain DSM104443_03919 PF00535 Glycosyl transferase family 2 DSM104443_03921 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DSM104443_03921 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_03925 PF03301 Tryptophan 2,3-dioxygenase DSM104443_03927 PF03976 Polyphosphate kinase 2 (PPK2) DSM104443_03930 PF00223 Photosystem I psaA/psaB protein DSM104443_03930 PF00691 OmpA family DSM104443_03931 PF07228 Stage II sporulation protein E (SpoIIE) DSM104443_03931 PF00672 HAMP domain DSM104443_03932 PF12706 Beta-lactamase superfamily domain DSM104443_03932 PF00753 Metallo-beta-lactamase superfamily DSM104443_03933 PF01740 STAS domain DSM104443_03935 PF05145 Transition state regulatory protein AbrB DSM104443_03936 PF00356 Bacterial regulatory proteins, lacI family DSM104443_03938 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03939 PF00920 Dehydratase family DSM104443_03940 PF08450 SMP-30/Gluconolactonase/LRE-like region DSM104443_03941 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03942 PF03328 HpcH/HpaI aldolase/citrate lyase family DSM104443_03943 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03948 PF00083 Sugar (and other) transporter DSM104443_03949 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_03949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_03950 PF00072 Response regulator receiver domain DSM104443_03950 PF00486 Transcriptional regulatory protein, C terminal DSM104443_03957 PF17863 AAA lid domain DSM104443_03957 PF07726 ATPase family associated with various cellular activities (AAA) DSM104443_03965 PF01361 Tautomerase enzyme DSM104443_03966 PF00694 Aconitase C-terminal domain DSM104443_03967 PF00330 Aconitase family (aconitate hydratase) DSM104443_03969 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03970 PF03466 LysR substrate binding domain DSM104443_03970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03974 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03975 PF16363 GDP-mannose 4,6 dehydratase DSM104443_03978 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03979 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03980 PF03972 MmgE/PrpD family DSM104443_03981 PF00753 Metallo-beta-lactamase superfamily DSM104443_03986 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03986 PF03466 LysR substrate binding domain DSM104443_03989 PF00144 Beta-lactamase DSM104443_03992 PF00561 alpha/beta hydrolase fold DSM104443_03993 PF03466 LysR substrate binding domain DSM104443_03993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_03995 PF02566 OsmC-like protein DSM104443_03996 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_03997 PF01266 FAD dependent oxidoreductase DSM104443_03999 PF13185 GAF domain DSM104443_03999 PF07730 Histidine kinase DSM104443_03999 PF13492 GAF domain DSM104443_03999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04000 PF00072 Response regulator receiver domain DSM104443_04000 PF00196 Bacterial regulatory proteins, luxR family DSM104443_04003 PF00561 alpha/beta hydrolase fold DSM104443_04006 PF05957 Bacterial protein of unknown function (DUF883) DSM104443_04009 PF03009 Glycerophosphoryl diester phosphodiesterase family DSM104443_04013 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_04014 PF08240 Alcohol dehydrogenase GroES-like domain DSM104443_04014 PF00107 Zinc-binding dehydrogenase DSM104443_04015 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_04018 PF02254 TrkA-N domain DSM104443_04018 PF07885 Ion channel DSM104443_04020 PF05726 Pirin C-terminal cupin domain DSM104443_04020 PF02678 Pirin DSM104443_04021 PF00381 PTS HPr component phosphorylation site DSM104443_04022 PF03572 Peptidase family S41 DSM104443_04022 PF07676 WD40-like Beta Propeller Repeat DSM104443_04022 PF14685 Tricorn protease PDZ domain DSM104443_04022 PF14684 Tricorn protease C1 domain DSM104443_04023 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_04023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04027 PF13406 Transglycosylase SLT domain DSM104443_04031 PF00248 Aldo/keto reductase family DSM104443_04033 PF00561 alpha/beta hydrolase fold DSM104443_04036 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_04037 PF03781 Sulfatase-modifying factor enzyme 1 DSM104443_04039 PF00392 Bacterial regulatory proteins, gntR family DSM104443_04039 PF00155 Aminotransferase class I and II DSM104443_04040 PF00005 ABC transporter DSM104443_04046 PF13180 PDZ domain DSM104443_04046 PF03572 Peptidase family S41 DSM104443_04049 PF13476 AAA domain DSM104443_04051 PF13545 Crp-like helix-turn-helix domain DSM104443_04051 PF00027 Cyclic nucleotide-binding domain DSM104443_04052 PF00118 TCP-1/cpn60 chaperonin family DSM104443_04053 PF00166 Chaperonin 10 Kd subunit DSM104443_04056 PF07689 KaiB domain DSM104443_04056 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_04056 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04057 PF00072 Response regulator receiver domain DSM104443_04057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04057 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_04057 PF01627 Hpt domain DSM104443_04059 PF13581 Histidine kinase-like ATPase domain DSM104443_04060 PF01740 STAS domain DSM104443_04061 PF08678 Rsbr N terminal DSM104443_04061 PF01740 STAS domain DSM104443_04062 PF13091 PLD-like domain DSM104443_04062 PF13396 Phospholipase_D-nuclease N-terminal DSM104443_04065 PF00202 Aminotransferase class-III DSM104443_04066 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DSM104443_04067 PF05694 56kDa selenium binding protein (SBP56) DSM104443_04069 PF18158 Adaptive response protein AidB N-terminal domain DSM104443_04069 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_04069 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_04070 PF03073 TspO/MBR family DSM104443_04073 PF01170 Putative RNA methylase family UPF0020 DSM104443_04073 PF02926 THUMP domain DSM104443_04074 PF03653 Uncharacterised protein family (UPF0093) DSM104443_04075 PF11412 Disulphide bond corrector protein DsbC DSM104443_04075 PF13098 Thioredoxin-like domain DSM104443_04075 PF02683 Cytochrome C biogenesis protein transmembrane region DSM104443_04076 PF00578 AhpC/TSA family DSM104443_04083 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DSM104443_04086 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_04089 PF00072 Response regulator receiver domain DSM104443_04089 PF04397 LytTr DNA-binding domain DSM104443_04090 PF06580 Histidine kinase DSM104443_04090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04090 PF00672 HAMP domain DSM104443_04090 PF02743 Cache domain DSM104443_04091 PF04397 LytTr DNA-binding domain DSM104443_04091 PF00072 Response regulator receiver domain DSM104443_04092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04092 PF06580 Histidine kinase DSM104443_04092 PF07694 5TMR of 5TMR-LYT DSM104443_04094 PF00072 Response regulator receiver domain DSM104443_04094 PF04397 LytTr DNA-binding domain DSM104443_04095 PF07694 5TMR of 5TMR-LYT DSM104443_04095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04095 PF06580 Histidine kinase DSM104443_04099 PF08402 TOBE domain DSM104443_04099 PF00005 ABC transporter DSM104443_04100 PF13416 Bacterial extracellular solute-binding protein DSM104443_04101 PF13419 Haloacid dehalogenase-like hydrolase DSM104443_04102 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_04103 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_04104 PF00905 Penicillin binding protein transpeptidase domain DSM104443_04106 PF01596 O-methyltransferase DSM104443_04107 PF07676 WD40-like Beta Propeller Repeat DSM104443_04107 PF00326 Prolyl oligopeptidase family DSM104443_04109 PF00106 short chain dehydrogenase DSM104443_04110 PF03109 ABC1 family DSM104443_04112 PF00561 alpha/beta hydrolase fold DSM104443_04113 PF00069 Protein kinase domain DSM104443_04115 PF07690 Major Facilitator Superfamily DSM104443_04118 PF16701 Adenylate cyclase regulatory domain DSM104443_04118 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_04119 PF01625 Peptide methionine sulfoxide reductase DSM104443_04120 PF02867 Ribonucleotide reductase, barrel domain DSM104443_04120 PF00317 Ribonucleotide reductase, all-alpha domain DSM104443_04120 PF03477 ATP cone domain DSM104443_04125 PF00486 Transcriptional regulatory protein, C terminal DSM104443_04125 PF00072 Response regulator receiver domain DSM104443_04126 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_04126 PF00672 HAMP domain DSM104443_04126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04128 PF01209 ubiE/COQ5 methyltransferase family DSM104443_04131 PF00381 PTS HPr component phosphorylation site DSM104443_04132 PF02896 PEP-utilising enzyme, TIM barrel domain DSM104443_04132 PF05524 PEP-utilising enzyme, N-terminal DSM104443_04132 PF00391 PEP-utilising enzyme, mobile domain DSM104443_04133 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_04133 PF00563 EAL domain DSM104443_04133 PF03707 Bacterial signalling protein N terminal repeat DSM104443_04136 PF10005 zinc-ribbon domain DSM104443_04136 PF15887 Putative zinc-binding metallo-peptidase DSM104443_04139 PF00561 alpha/beta hydrolase fold DSM104443_04140 PF00561 alpha/beta hydrolase fold DSM104443_04140 PF07021 Methionine biosynthesis protein MetW DSM104443_04141 PF07690 Major Facilitator Superfamily DSM104443_04142 PF01641 SelR domain DSM104443_04144 PF12848 ABC transporter DSM104443_04144 PF00005 ABC transporter DSM104443_04145 PF03372 Endonuclease/Exonuclease/phosphatase family DSM104443_04146 PF00156 Phosphoribosyl transferase domain DSM104443_04148 PF02637 GatB domain DSM104443_04148 PF02934 GatB/GatE catalytic domain DSM104443_04149 PF01425 Amidase DSM104443_04150 PF02686 Glu-tRNAGln amidotransferase C subunit DSM104443_04152 PF04085 rod shape-determining protein MreC DSM104443_04153 PF04093 rod shape-determining protein MreD DSM104443_04154 PF03717 Penicillin-binding Protein dimerisation domain DSM104443_04154 PF00905 Penicillin binding protein transpeptidase domain DSM104443_04155 PF01098 Cell cycle protein DSM104443_04156 PF03330 Lytic transglycolase DSM104443_04156 PF05036 Sporulation related domain DSM104443_04157 PF00768 D-alanyl-D-alanine carboxypeptidase DSM104443_04157 PF07943 Penicillin-binding protein 5, C-terminal domain DSM104443_04158 PF01063 Amino-transferase class IV DSM104443_04159 PF04359 Protein of unknown function (DUF493) DSM104443_04160 PF03099 Biotin/lipoate A/B protein ligase family DSM104443_04161 PF04055 Radical SAM superfamily DSM104443_04161 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DSM104443_04165 PF01274 Malate synthase DSM104443_04166 PF03466 LysR substrate binding domain DSM104443_04166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_04168 PF04397 LytTr DNA-binding domain DSM104443_04168 PF00072 Response regulator receiver domain DSM104443_04169 PF06580 Histidine kinase DSM104443_04169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04169 PF07694 5TMR of 5TMR-LYT DSM104443_04170 PF00206 Lyase DSM104443_04170 PF14698 Argininosuccinate lyase C-terminal DSM104443_04172 PF01491 Frataxin-like domain DSM104443_04173 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DSM104443_04173 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DSM104443_04175 PF02834 LigT like Phosphoesterase DSM104443_04176 PF00571 CBS domain DSM104443_04176 PF01769 Divalent cation transporter DSM104443_04176 PF03448 MgtE intracellular N domain DSM104443_04177 PF00912 Transglycosylase DSM104443_04178 PF08501 Shikimate dehydrogenase substrate binding domain DSM104443_04178 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DSM104443_04178 PF01488 Shikimate / quinate 5-dehydrogenase DSM104443_04179 PF00120 Glutamine synthetase, catalytic domain DSM104443_04179 PF03951 Glutamine synthetase, beta-Grasp domain DSM104443_04181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DSM104443_04181 PF00989 PAS fold DSM104443_04181 PF00512 His Kinase A (phospho-acceptor) domain DSM104443_04182 PF00072 Response regulator receiver domain DSM104443_04182 PF00158 Sigma-54 interaction domain DSM104443_04182 PF02954 Bacterial regulatory protein, Fis family DSM104443_04183 PF00563 EAL domain DSM104443_04183 PF00990 Diguanylate cyclase, GGDEF domain DSM104443_04183 PF03707 Bacterial signalling protein N terminal repeat DSM104443_04186 PF01432 Peptidase family M3 DSM104443_04187 PF01979 Amidohydrolase family DSM104443_04188 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DSM104443_04188 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DSM104443_04189 PF00156 Phosphoribosyl transferase domain DSM104443_04190 PF03652 Holliday junction resolvase DSM104443_04191 PF02622 Uncharacterized ACR, COG1678 DSM104443_04192 PF03441 FAD binding domain of DNA photolyase DSM104443_04192 PF00875 DNA photolyase DSM104443_04200 PF05728 Uncharacterised protein family (UPF0227) DSM104443_04201 PF02567 Phenazine biosynthesis-like protein DSM104443_04202 PF02875 Mur ligase family, glutamate ligase domain DSM104443_04202 PF08245 Mur ligase middle domain DSM104443_04202 PF01225 Mur ligase family, catalytic domain DSM104443_04205 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DSM104443_04205 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DSM104443_04210 PF09335 SNARE associated Golgi protein DSM104443_04211 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DSM104443_04211 PF03900 Porphobilinogen deaminase, C-terminal domain DSM104443_04213 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DSM104443_04216 PF13193 AMP-binding enzyme C-terminal domain DSM104443_04216 PF00501 AMP-binding enzyme DSM104443_04217 PF00175 Oxidoreductase NAD-binding domain DSM104443_04217 PF00970 Oxidoreductase FAD-binding domain DSM104443_04217 PF00111 2Fe-2S iron-sulfur cluster binding domain DSM104443_04219 PF00578 AhpC/TSA family DSM104443_04220 PF01220 Dehydroquinase class II DSM104443_04221 PF00364 Biotin-requiring enzyme DSM104443_04222 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DSM104443_04222 PF02785 Biotin carboxylase C-terminal domain DSM104443_04222 PF00289 Biotin carboxylase, N-terminal domain DSM104443_04226 PF00294 pfkB family carbohydrate kinase DSM104443_04228 PF01553 Acyltransferase DSM104443_04229 PF00149 Calcineurin-like phosphoesterase DSM104443_04230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DSM104443_04232 PF04932 O-Antigen ligase DSM104443_04234 PF02719 Polysaccharide biosynthesis protein DSM104443_04235 PF00953 Glycosyl transferase family 4 DSM104443_04236 PF01370 NAD dependent epimerase/dehydratase family DSM104443_04239 PF01645 Conserved region in glutamate synthase DSM104443_04239 PF01493 GXGXG motif DSM104443_04239 PF04898 Glutamate synthase central domain DSM104443_04239 PF00310 Glutamine amidotransferases class-II DSM104443_04240 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_04240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DSM104443_04241 PF12146 Serine aminopeptidase, S33 DSM104443_04242 PF01208 Uroporphyrinogen decarboxylase (URO-D) DSM104443_04243 PF00270 DEAD/DEAH box helicase DSM104443_04243 PF18074 Primosomal protein N C-terminal domain DSM104443_04243 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DSM104443_04243 PF00271 Helicase conserved C-terminal domain DSM104443_04243 PF17764 3′ DNA-binding domain (3′BD) DSM104443_04244 PF05746 DALR anticodon binding domain DSM104443_04244 PF00750 tRNA synthetases class I (R) DSM104443_04244 PF03485 Arginyl tRNA synthetase N terminal domain DSM104443_04246 PF01323 DSBA-like thioredoxin domain DSM104443_04247 PF00106 short chain dehydrogenase DSM104443_04248 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_04249 PF00005 ABC transporter DSM104443_04251 PF00682 HMGL-like DSM104443_04252 PF00311 Phosphoenolpyruvate carboxylase DSM104443_04254 PF02515 CoA-transferase family III DSM104443_04256 PF00326 Prolyl oligopeptidase family DSM104443_04257 PF00005 ABC transporter DSM104443_04257 PF12848 ABC transporter DSM104443_04257 PF16326 ABC transporter C-terminal domain DSM104443_04258 PF07992 Pyridine nucleotide-disulphide oxidoreductase DSM104443_04259 PF05649 Peptidase family M13 DSM104443_04259 PF01431 Peptidase family M13 DSM104443_04261 PF03479 Plants and Prokaryotes Conserved (PCC) domain DSM104443_04261 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_04261 PF12804 MobA-like NTP transferase domain DSM104443_04263 PF07690 Major Facilitator Superfamily DSM104443_04264 PF05922 Peptidase inhibitor I9 DSM104443_04264 PF00082 Subtilase family DSM104443_04264 PF04151 Bacterial pre-peptidase C-terminal domain DSM104443_04267 PF01433 Peptidase family M1 domain DSM104443_04271 PF00497 Bacterial extracellular solute-binding proteins, family 3 DSM104443_04272 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_04273 PF00528 Binding-protein-dependent transport system inner membrane component DSM104443_04274 PF00005 ABC transporter DSM104443_04275 PF03401 Tripartite tricarboxylate transporter family receptor DSM104443_04276 PF12706 Beta-lactamase superfamily domain DSM104443_04277 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DSM104443_04277 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DSM104443_04277 PF02770 Acyl-CoA dehydrogenase, middle domain DSM104443_04280 PF04226 Transglycosylase associated protein DSM104443_04281 PF03466 LysR substrate binding domain DSM104443_04281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DSM104443_04283 PF06779 Uncharacterised MFS-type transporter YbfB DSM104443_04286 PF01380 SIS domain DSM104443_04290 PF00211 Adenylate and Guanylate cyclase catalytic domain DSM104443_04290 PF00072 Response regulator receiver domain DSM104443_04291 PF00027 Cyclic nucleotide-binding domain DSM104443_04291 PF13545 Crp-like helix-turn-helix domain DSM104443_04293 PF12804 MobA-like NTP transferase domain DSM104443_04293 PF14602 Hexapeptide repeat of succinyl-transferase DSM104443_04293 PF00132 Bacterial transferase hexapeptide (six repeats) DSM104443_04294 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DSM104443_04294 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DSM104443_04295 PF02874 ATP synthase alpha/beta family, beta-barrel domain DSM104443_04295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104443_04296 PF00231 ATP synthase DSM104443_04297 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DSM104443_04297 PF00306 ATP synthase alpha/beta chain, C terminal domain DSM104443_04297 PF02874 ATP synthase alpha/beta family, beta-barrel domain DSM104443_04298 PF00213 ATP synthase delta (OSCP) subunit DSM104443_04299 PF00430 ATP synthase B/B' CF(0) DSM104443_04300 PF00137 ATP synthase subunit C DSM104443_04301 PF00119 ATP synthase A chain DSM104443_04303 PF17762 HTH domain found in ParB protein DSM104443_04303 PF02195 ParB-like nuclease domain DSM104443_04304 PF13614 AAA domain DSM104443_04305 PF02527 rRNA small subunit methyltransferase G DSM104443_04306 PF01134 Glucose inhibited division protein A DSM104443_04306 PF13932 GidA associated domain DSM104443_04309 PF10396 GTP-binding protein TrmE N-terminus DSM104443_04309 PF12631 MnmE helical domain DSM104443_04309 PF01926 50S ribosome-binding GTPase DSM104443_04310 PF14849 YidC periplasmic domain DSM104443_04310 PF02096 60Kd inner membrane protein DSM104443_04311 PF01809 Putative membrane protein insertion efficiency factor DSM104443_04312 PF00825 Ribonuclease P DSM104443_04313 PF00468 Ribosomal protein L34