locus-tag class description M2904_00005 PF06865 Pyrimidine/purine nucleoside phosphorylase M2904_00010 PF03807 NADP oxidoreductase coenzyme F420-dependent M2904_00010 PF14748 Pyrroline-5-carboxylate reductase dimerisation M2904_00015 PF04055 Radical SAM superfamily M2904_00025 PF01228 Glycine radical M2904_00025 PF02901 Pyruvate formate lyase-like M2904_00035 PF03313 Serine dehydratase alpha chain M2904_00040 PF01842 ACT domain M2904_00040 PF03315 Serine dehydratase beta chain M2904_00045 PF00298 Ribosomal protein L11, RNA binding domain M2904_00045 PF03946 Ribosomal protein L11, N-terminal domain M2904_00050 PF00687 Ribosomal protein L1p/L10e family M2904_00055 PF00466 Ribosomal protein L10 M2904_00060 PF16320 Ribosomal protein L7/L12 dimerisation domain M2904_00060 PF00542 Ribosomal protein L7/L12 C-terminal domain M2904_00070 PF02773 S-adenosylmethionine synthetase, C-terminal domain M2904_00070 PF02772 S-adenosylmethionine synthetase, central domain M2904_00070 PF00438 S-adenosylmethionine synthetase, N-terminal domain M2904_00075 PF07690 Major Facilitator Superfamily M2904_00080 PF06962 Putative rRNA methylase M2904_00085 PF04055 Radical SAM superfamily M2904_00085 PF16199 Radical_SAM C-terminal domain M2904_00090 PF01569 PAP2 superfamily M2904_00115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M2904_00115 PF01476 LysM domain M2904_00120 PF09334 tRNA synthetases class I (M) M2904_00120 PF13603 Leucyl-tRNA synthetase, Domain 2 M2904_00120 PF08264 Anticodon-binding domain of tRNA M2904_00120 PF00133 tRNA synthetases class I (I, L, M and V) M2904_00125 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M2904_00130 PF01451 Low molecular weight phosphotyrosine protein phosphatase M2904_00135 PF04203 Sortase domain M2904_00145 PF07478 D-ala D-ala ligase C-terminus M2904_00145 PF01820 D-ala D-ala ligase N-terminus M2904_00150 PF08245 Mur ligase middle domain M2904_00150 PF01225 Mur ligase family, catalytic domain M2904_00150 PF02875 Mur ligase family, glutamate ligase domain M2904_00155 PF00270 DEAD/DEAH box helicase M2904_00155 PF00271 Helicase conserved C-terminal domain M2904_00160 PF01648 4'-phosphopantetheinyl transferase superfamily M2904_00175 PF02229 Transcriptional Coactivator p15 (PC4) M2904_00180 PF08340 Domain of unknown function (DUF1732) M2904_00180 PF03755 YicC-like family, N-terminal region M2904_00185 PF00625 Guanylate kinase M2904_00190 PF01192 RNA polymerase Rpb6 M2904_00195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M2904_00195 PF18074 Primosomal protein N C-terminal domain M2904_00195 PF04851 Type III restriction enzyme, res subunit M2904_00195 PF00271 Helicase conserved C-terminal domain M2904_00195 PF17764 3′ DNA-binding domain (3′BD) M2904_00200 PF01327 Polypeptide deformylase M2904_00205 PF00551 Formyl transferase M2904_00205 PF02911 Formyl transferase, C-terminal domain M2904_00210 PF01189 16S rRNA methyltransferase RsmB/F M2904_00210 PF01029 NusB family M2904_00220 PF03793 PASTA domain M2904_00220 PF00069 Protein kinase domain M2904_00225 PF02683 Cytochrome C biogenesis protein transmembrane region M2904_00235 PF03193 RsgA GTPase M2904_00235 PF16745 RsgA N-terminal domain M2904_00240 PF00834 Ribulose-phosphate 3 epimerase family M2904_00245 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain M2904_00245 PF04263 Thiamin pyrophosphokinase, catalytic domain M2904_00250 PF00830 Ribosomal L28 family M2904_00255 PF03780 Asp23 family, cell envelope-related function M2904_00260 PF13684 Dihydroxyacetone kinase family M2904_00260 PF02734 DAK2 domain M2904_00265 PF00270 DEAD/DEAH box helicase M2904_00265 PF00271 Helicase conserved C-terminal domain M2904_00265 PF17191 RecG wedge domain M2904_00270 PF02504 Fatty acid synthesis protein M2904_00275 PF00550 Phosphopantetheine attachment site M2904_00280 PF00005 ABC transporter M2904_00280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_00285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_00285 PF00005 ABC transporter M2904_00290 PF00528 Binding-protein-dependent transport system inner membrane component M2904_00295 PF00528 Binding-protein-dependent transport system inner membrane component M2904_00300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M2904_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M2904_00310 PF00035 Double-stranded RNA binding motif M2904_00310 PF14622 Ribonuclease-III-like M2904_00315 PF06470 SMC proteins Flexible Hinge Domain M2904_00315 PF02463 RecF/RecN/SMC N terminal domain M2904_00325 PF00448 SRP54-type protein, GTPase domain M2904_00325 PF02881 SRP54-type protein, helical bundle domain M2904_00330 PF02655 ATP-grasp domain M2904_00330 PF18419 ATP-grasp-like domain M2904_00330 PF04262 Glutamate-cysteine ligase M2904_00335 PF05816 Toxic anion resistance protein (TelA) M2904_00345 PF00293 NUDIX domain M2904_00355 PF01048 Phosphorylase superfamily M2904_00360 PF00857 Isochorismatase family M2904_00365 PF01757 Acyltransferase family M2904_00370 PF00266 Aminotransferase class-V M2904_00385 PF12833 Helix-turn-helix domain M2904_00385 PF01497 Periplasmic binding protein M2904_00390 PF00664 ABC transporter transmembrane region M2904_00390 PF00005 ABC transporter M2904_00395 PF00664 ABC transporter transmembrane region M2904_00395 PF00005 ABC transporter M2904_00400 PF01323 DSBA-like thioredoxin domain M2904_00405 PF00005 ABC transporter M2904_00410 PF01458 Uncharacterized protein family (UPF0051) M2904_00415 PF00266 Aminotransferase class-V M2904_00420 PF01592 NifU-like N terminal domain M2904_00425 PF01458 Uncharacterized protein family (UPF0051) M2904_00455 PF00005 ABC transporter M2904_00465 PF14028 Lantibiotic biosynthesis dehydratase C-term M2904_00465 PF04738 Lantibiotic dehydratase, N terminus M2904_00470 PF00005 ABC transporter M2904_00475 PF05147 Lanthionine synthetase C-like protein M2904_00480 PF00072 Response regulator receiver domain M2904_00480 PF00486 Transcriptional regulatory protein, C terminal M2904_00485 PF00512 His Kinase A (phospho-acceptor) domain M2904_00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_00495 PF00877 NlpC/P60 family M2904_00500 PF00874 PRD domain M2904_00500 PF03123 CAT RNA binding domain M2904_00505 PF00367 phosphotransferase system, EIIB M2904_00505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M2904_00505 PF02378 Phosphotransferase system, EIIC M2904_00510 PF00232 Glycosyl hydrolase family 1 M2904_00515 PF12848 ABC transporter M2904_00515 PF16326 ABC transporter C-terminal domain M2904_00515 PF00005 ABC transporter M2904_00525 PF01047 MarR family M2904_00525 PF00480 ROK family M2904_00535 PF02378 Phosphotransferase system, EIIC M2904_00545 PF17910 FeoB cytosolic helical domain M2904_00545 PF07664 Ferrous iron transport protein B C terminus M2904_00545 PF07670 Nucleoside recognition M2904_00545 PF02421 Ferrous iron transport protein B M2904_00560 PF12833 Helix-turn-helix domain M2904_00560 PF00072 Response regulator receiver domain M2904_00565 PF02743 Cache domain M2904_00565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_00565 PF06580 Histidine kinase M2904_00565 PF00672 HAMP domain M2904_00570 PF00890 FAD binding domain M2904_00570 PF04205 FMN-binding domain M2904_00575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2904_00600 PF00578 AhpC/TSA family M2904_00600 PF10417 C-terminal domain of 1-Cys peroxiredoxin M2904_00605 PF00854 POT family M2904_00620 PF03358 NADPH-dependent FMN reductase M2904_00620 PF04205 FMN-binding domain M2904_00620 PF00890 FAD binding domain M2904_00645 PF03123 CAT RNA binding domain M2904_00645 PF00874 PRD domain M2904_00650 PF02378 Phosphotransferase system, EIIC M2904_00650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M2904_00650 PF00367 phosphotransferase system, EIIB M2904_00655 PF00232 Glycosyl hydrolase family 1 M2904_00680 PF00528 Binding-protein-dependent transport system inner membrane component M2904_00690 PF00528 Binding-protein-dependent transport system inner membrane component M2904_00695 PF00196 Bacterial regulatory proteins, luxR family M2904_00695 PF00072 Response regulator receiver domain M2904_00700 PF06580 Histidine kinase M2904_00700 PF02743 Cache domain M2904_00700 PF00672 HAMP domain M2904_00700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_00730 PF00480 ROK family M2904_00740 PF07687 Peptidase dimerisation domain M2904_00740 PF01546 Peptidase family M20/M25/M40 M2904_00770 PF00756 Putative esterase M2904_00770 PF01476 LysM domain M2904_00775 PF00149 Calcineurin-like phosphoesterase M2904_00775 PF12320 Type 5 capsule protein repressor C-terminal domain M2904_00780 PF13476 AAA domain M2904_00790 PF01047 MarR family M2904_00795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2904_00805 PF03358 NADPH-dependent FMN reductase M2904_00815 PF00875 DNA photolyase M2904_00815 PF03441 FAD binding domain of DNA photolyase M2904_00830 PF01926 50S ribosome-binding GTPase M2904_00845 PF01926 50S ribosome-binding GTPase M2904_00850 PF01985 CRS1 / YhbY (CRM) domain M2904_00855 PF01467 Cytidylyltransferase-like M2904_00860 PF01966 HD domain M2904_00870 PF13649 Methyltransferase domain M2904_00880 PF00478 IMP dehydrogenase / GMP reductase domain M2904_00890 PF08543 Phosphomethylpyrimidine kinase M2904_00895 PF00392 Bacterial regulatory proteins, gntR family M2904_00895 PF00155 Aminotransferase class I and II M2904_00905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M2904_00905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M2904_00910 PF00550 Phosphopantetheine attachment site M2904_00915 PF03060 Nitronate monooxygenase M2904_00920 PF00698 Acyl transferase domain M2904_00930 PF00109 Beta-ketoacyl synthase, N-terminal domain M2904_00930 PF02801 Beta-ketoacyl synthase, C-terminal domain M2904_00935 PF00364 Biotin-requiring enzyme M2904_00940 PF07977 FabA-like domain M2904_00945 PF02785 Biotin carboxylase C-terminal domain M2904_00945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2904_00945 PF00289 Biotin carboxylase, N-terminal domain M2904_00950 PF01039 Carboxyl transferase domain M2904_00955 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M2904_00960 PF03466 LysR substrate binding domain M2904_00960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2904_00970 PF00676 Dehydrogenase E1 component M2904_00975 PF02779 Transketolase, pyrimidine binding domain M2904_00975 PF02780 Transketolase, C-terminal domain M2904_00980 PF02817 e3 binding domain M2904_00980 PF00364 Biotin-requiring enzyme M2904_00980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2904_00985 PF01515 Phosphate acetyl/butaryl transferase M2904_00990 PF00871 Acetokinase family M2904_00995 PF00005 ABC transporter M2904_01000 PF00528 Binding-protein-dependent transport system inner membrane component M2904_01005 PF06738 Putative threonine/serine exporter M2904_01025 PF01266 FAD dependent oxidoreductase M2904_01030 PF01545 Cation efflux family M2904_01030 PF16916 Dimerisation domain of Zinc Transporter M2904_01035 PF03951 Glutamine synthetase, beta-Grasp domain M2904_01035 PF00120 Glutamine synthetase, catalytic domain M2904_01040 PF00270 DEAD/DEAH box helicase M2904_01040 PF00570 HRDC domain M2904_01040 PF16124 RecQ zinc-binding M2904_01040 PF09382 RQC domain M2904_01040 PF00271 Helicase conserved C-terminal domain M2904_01050 PF00326 Prolyl oligopeptidase family M2904_01055 PF00005 ABC transporter M2904_01055 PF09383 NIL domain M2904_01060 PF00528 Binding-protein-dependent transport system inner membrane component M2904_01065 PF03180 NLPA lipoprotein M2904_01070 PF01546 Peptidase family M20/M25/M40 M2904_01070 PF07687 Peptidase dimerisation domain M2904_01080 PF00271 Helicase conserved C-terminal domain M2904_01080 PF00270 DEAD/DEAH box helicase M2904_01085 PF07694 5TMR of 5TMR-LYT M2904_01085 PF13492 GAF domain M2904_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_01085 PF06580 Histidine kinase M2904_01090 PF04397 LytTr DNA-binding domain M2904_01090 PF00072 Response regulator receiver domain M2904_01095 PF02554 Carbon starvation protein CstA M2904_01105 PF01496 V-type ATPase 116kDa subunit family M2904_01110 PF00137 ATP synthase subunit C M2904_01120 PF01992 ATP synthase (C/AC39) subunit M2904_01125 PF01990 ATP synthase (F/14-kDa) subunit M2904_01130 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2904_01130 PF16886 ATPsynthase alpha/beta subunit N-term extension M2904_01130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2904_01135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2904_01135 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2904_01140 PF01813 ATP synthase subunit D M2904_01145 PF13520 Amino acid permease M2904_01150 PF01380 SIS domain M2904_01160 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M2904_01165 PF10509 Galactokinase galactose-binding signature M2904_01165 PF08544 GHMP kinases C terminal M2904_01165 PF00288 GHMP kinases N terminal domain M2904_01170 PF16363 GDP-mannose 4,6 dehydratase M2904_01175 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M2904_01175 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M2904_01180 PF00356 Bacterial regulatory proteins, lacI family M2904_01185 PF00814 Glycoprotease family M2904_01195 PF00583 Acetyltransferase (GNAT) family M2904_01200 PF00814 Glycoprotease family M2904_01205 PF04565 RNA polymerase Rpb2, domain 3 M2904_01205 PF00562 RNA polymerase Rpb2, domain 6 M2904_01205 PF04563 RNA polymerase beta subunit M2904_01205 PF04561 RNA polymerase Rpb2, domain 2 M2904_01205 PF04560 RNA polymerase Rpb2, domain 7 M2904_01205 PF10385 RNA polymerase beta subunit external 1 domain M2904_01210 PF00623 RNA polymerase Rpb1, domain 2 M2904_01210 PF04983 RNA polymerase Rpb1, domain 3 M2904_01210 PF05000 RNA polymerase Rpb1, domain 4 M2904_01210 PF04998 RNA polymerase Rpb1, domain 5 M2904_01210 PF04997 RNA polymerase Rpb1, domain 1 M2904_01230 PF00300 Histidine phosphatase superfamily (branch 1) M2904_01235 PF00072 Response regulator receiver domain M2904_01235 PF00486 Transcriptional regulatory protein, C terminal M2904_01240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_01245 PF00528 Binding-protein-dependent transport system inner membrane component M2904_01250 PF00005 ABC transporter M2904_01255 PF00497 Bacterial extracellular solute-binding proteins, family 3 M2904_01260 PF02618 YceG-like family M2904_01265 PF03449 Transcription elongation factor, N-terminal M2904_01265 PF01272 Transcription elongation factor, GreA/GreB, C-term M2904_01275 PF00672 HAMP domain M2904_01275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_01275 PF07730 Histidine kinase M2904_01280 PF00196 Bacterial regulatory proteins, luxR family M2904_01280 PF00072 Response regulator receiver domain M2904_01285 PF02080 TrkA-C domain M2904_01285 PF02254 TrkA-N domain M2904_01295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M2904_01295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2904_01305 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M2904_01305 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M2904_01310 PF01678 Diaminopimelate epimerase M2904_01315 PF00398 Ribosomal RNA adenine dimethylase M2904_01320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_01325 PF00005 ABC transporter M2904_01340 PF01712 Deoxynucleoside kinase M2904_01345 PF02056 Family 4 glycosyl hydrolase M2904_01345 PF11975 Family 4 glycosyl hydrolase C-terminal domain M2904_01355 PF03807 NADP oxidoreductase coenzyme F420-dependent M2904_01355 PF14748 Pyrroline-5-carboxylate reductase dimerisation M2904_01360 PF03706 Lysylphosphatidylglycerol synthase TM region M2904_01360 PF09924 Uncharacterised conserved protein (DUF2156) M2904_01370 PF00005 ABC transporter M2904_01375 PF00528 Binding-protein-dependent transport system inner membrane component M2904_01385 PF02705 K+ potassium transporter M2904_01390 PF00144 Beta-lactamase M2904_01395 PF07690 Major Facilitator Superfamily M2904_01400 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_01410 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_01410 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M2904_01415 PF07685 CobB/CobQ-like glutamine amidotransferase domain M2904_01420 PF08353 Domain of unknown function (DUF1727) M2904_01420 PF08245 Mur ligase middle domain M2904_01430 PF18708 MapZ extracellular C-terminal domain 2 M2904_01430 PF18041 MapZ extracellular domain 1 M2904_01435 PF02522 Aminoglycoside 3-N-acetyltransferase M2904_01440 PF01361 Tautomerase enzyme M2904_01445 PF03553 Na+/H+ antiporter family M2904_01450 PF00356 Bacterial regulatory proteins, lacI family M2904_01460 PF00271 Helicase conserved C-terminal domain M2904_01460 PF04851 Type III restriction enzyme, res subunit M2904_01460 PF02151 UvrB/uvrC motif M2904_01460 PF12344 Ultra-violet resistance protein B M2904_01460 PF17757 UvrB interaction domain M2904_01465 PF00005 ABC transporter M2904_01465 PF17760 UvrA interaction domain M2904_01465 PF17755 UvrA DNA-binding domain M2904_01470 PF01063 Amino-transferase class IV M2904_01475 PF03668 P-loop ATPase protein family M2904_01480 PF01933 Uncharacterised protein family UPF0052 M2904_01485 PF10298 WhiA N-terminal LAGLIDADG-like domain M2904_01485 PF14527 WhiA LAGLIDADG-like domain M2904_01485 PF02650 WhiA C-terminal HTH domain M2904_01490 PF00574 Clp protease M2904_01500 PF01245 Ribosomal protein L19 M2904_01505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2904_01510 PF02632 BioY family M2904_01515 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_01515 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M2904_01520 PF00326 Prolyl oligopeptidase family M2904_01525 PF01883 Iron-sulfur cluster assembly protein M2904_01540 PF01470 Pyroglutamyl peptidase M2904_01550 PF12146 Serine aminopeptidase, S33 M2904_01555 PF01515 Phosphate acetyl/butaryl transferase M2904_01560 PF00871 Acetokinase family M2904_01565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_01565 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_01570 PF00676 Dehydrogenase E1 component M2904_01575 PF02780 Transketolase, C-terminal domain M2904_01575 PF02779 Transketolase, pyrimidine binding domain M2904_01580 PF02817 e3 binding domain M2904_01580 PF00364 Biotin-requiring enzyme M2904_01580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2904_01590 PF03466 LysR substrate binding domain M2904_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2904_01595 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M2904_01600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2904_01600 PF02378 Phosphotransferase system, EIIC M2904_01605 PF00232 Glycosyl hydrolase family 1 M2904_01615 PF00455 DeoR C terminal sensor domain M2904_01615 PF08220 DeoR-like helix-turn-helix domain M2904_01620 PF02502 Ribose/Galactose Isomerase M2904_01625 PF02502 Ribose/Galactose Isomerase M2904_01630 PF01791 DeoC/LacD family aldolase M2904_01635 PF00294 pfkB family carbohydrate kinase M2904_01645 PF13091 PLD-like domain M2904_01650 PF02901 Pyruvate formate lyase-like M2904_01650 PF01228 Glycine radical M2904_01655 PF04055 Radical SAM superfamily M2904_01660 PF01368 DHH family M2904_01660 PF02833 DHHA2 domain M2904_01665 PF01479 S4 domain M2904_01665 PF00849 RNA pseudouridylate synthase M2904_01680 PF04851 Type III restriction enzyme, res subunit M2904_01680 PF00929 Exonuclease M2904_01680 PF13307 Helicase C-terminal domain M2904_01690 PF00155 Aminotransferase class I and II M2904_01695 PF00152 tRNA synthetases class II (D, K and N) M2904_01695 PF01336 OB-fold nucleic acid binding domain M2904_01700 PF03965 Penicillinase repressor M2904_01705 PF00403 Heavy-metal-associated domain M2904_01710 PF00403 Heavy-metal-associated domain M2904_01720 PF00860 Permease family M2904_01725 PF03591 AzlC protein M2904_01735 PF17783 CvfB-like winged helix domain M2904_01735 PF13509 S1 domain M2904_01745 PF01475 Ferric uptake regulator family M2904_01750 PF02899 Phage integrase, N-terminal SAM-like domain M2904_01750 PF00589 Phage integrase family M2904_01755 PF02616 Segregation and condensation protein ScpA M2904_01760 PF04079 Segregation and condensation complex subunit ScpB M2904_01765 PF01479 S4 domain M2904_01765 PF00849 RNA pseudouridylate synthase M2904_01770 PF00072 Response regulator receiver domain M2904_01770 PF00486 Transcriptional regulatory protein, C terminal M2904_01775 PF12822 ECF transporter, substrate-specific component M2904_01790 PF00270 DEAD/DEAH box helicase M2904_01790 PF00271 Helicase conserved C-terminal domain M2904_01800 PF02224 Cytidylate kinase M2904_01805 PF00575 S1 RNA binding domain M2904_01810 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M2904_01810 PF01926 50S ribosome-binding GTPase M2904_01815 PF00216 Bacterial DNA-binding protein M2904_01825 PF08858 IDEAL domain M2904_01825 PF08864 UPF0302 domain M2904_01830 PF04198 Putative sugar-binding domain M2904_01835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M2904_01835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M2904_01840 PF00162 Phosphoglycerate kinase M2904_01845 PF00121 Triosephosphate isomerase M2904_01850 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M2904_01850 PF01676 Metalloenzyme superfamily M2904_01855 PF00113 Enolase, C-terminal TIM barrel domain M2904_01855 PF03952 Enolase, N-terminal domain M2904_01875 PF08708 Primase C terminal 1 (PriCT-1) M2904_01885 PF02796 Helix-turn-helix domain of resolvase M2904_01885 PF00239 Resolvase, N terminal domain M2904_01895 PF00302 Chloramphenicol acetyltransferase M2904_01900 PF02486 Replication initiation factor M2904_01915 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) M2904_01920 PF00398 Ribosomal RNA adenine dimethylase M2904_01935 PF00583 Acetyltransferase (GNAT) family M2904_01940 PF01636 Phosphotransferase enzyme family M2904_01950 PF00583 Acetyltransferase (GNAT) family M2904_01955 PF01636 Phosphotransferase enzyme family M2904_01970 PF00156 Phosphoribosyl transferase domain M2904_01980 PF01751 Toprim domain M2904_01980 PF01131 DNA topoisomerase M2904_01990 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) M2904_01995 PF00398 Ribosomal RNA adenine dimethylase M2904_02005 PF13614 AAA domain M2904_02015 PF08998 Bacterial epsilon antitoxin M2904_02055 PF00528 Binding-protein-dependent transport system inner membrane component M2904_02060 PF00571 CBS domain M2904_02060 PF00005 ABC transporter M2904_02065 PF00392 Bacterial regulatory proteins, gntR family M2904_02065 PF07729 FCD domain M2904_02070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M2904_02070 PF00056 lactate/malate dehydrogenase, NAD binding domain M2904_02085 PF01070 FMN-dependent dehydrogenase M2904_02090 PF08544 GHMP kinases C terminal M2904_02090 PF00288 GHMP kinases N terminal domain M2904_02100 PF00288 GHMP kinases N terminal domain M2904_02100 PF08544 GHMP kinases C terminal M2904_02100 PF10509 Galactokinase galactose-binding signature M2904_02115 PF00368 Hydroxymethylglutaryl-coenzyme A reductase M2904_02120 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M2904_02120 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M2904_02125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M2904_02135 PF02954 Bacterial regulatory protein, Fis family M2904_02135 PF00989 PAS fold M2904_02135 PF00158 Sigma-54 interaction domain M2904_02140 PF00465 Iron-containing alcohol dehydrogenase M2904_02145 PF00171 Aldehyde dehydrogenase family M2904_02150 PF06130 Phosphate propanoyltransferase M2904_02160 PF00871 Acetokinase family M2904_02165 PF00465 Iron-containing alcohol dehydrogenase M2904_02170 PF01926 50S ribosome-binding GTPase M2904_02170 PF01018 GTP1/OBG M2904_02170 PF09269 Domain of unknown function (DUF1967) M2904_02175 PF12706 Beta-lactamase superfamily domain M2904_02175 PF00753 Metallo-beta-lactamase superfamily M2904_02180 PF00106 short chain dehydrogenase M2904_02190 PF02492 CobW/HypB/UreG, nucleotide-binding domain M2904_02190 PF07683 Cobalamin synthesis protein cobW C-terminal domain M2904_02195 PF01297 Zinc-uptake complex component A periplasmic M2904_02195 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment M2904_02200 PF10141 Single-strand DNA-specific exonuclease, C terminal domain M2904_02200 PF17768 RecJ OB domain M2904_02200 PF02272 DHHA1 domain M2904_02200 PF01368 DHH family M2904_02205 PF00156 Phosphoribosyl transferase domain M2904_02220 PF00730 HhH-GPD superfamily base excision DNA repair protein M2904_02220 PF10576 Iron-sulfur binding domain of endonuclease III M2904_02220 PF00633 Helix-hairpin-helix motif M2904_02225 PF00912 Transglycosylase M2904_02225 PF00905 Penicillin binding protein transpeptidase domain M2904_02230 PF03838 Recombination protein U M2904_02235 PF06908 YspA SLOG family M2904_02240 PF05103 DivIVA protein M2904_02250 PF01170 Putative RNA methylase family UPF0020 M2904_02250 PF02926 THUMP domain M2904_02255 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M2904_02265 PF00375 Sodium:dicarboxylate symporter family M2904_02270 PF13456 Reverse transcriptase-like M2904_02280 PF00313 'Cold-shock' DNA-binding domain M2904_02295 PF01252 Signal peptidase (SPase) II M2904_02300 PF01479 S4 domain M2904_02300 PF00849 RNA pseudouridylate synthase M2904_02305 PF00156 Phosphoribosyl transferase domain M2904_02310 PF00860 Permease family M2904_02315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M2904_02315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M2904_02320 PF01979 Amidohydrolase family M2904_02325 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M2904_02325 PF00117 Glutamine amidotransferase class-I M2904_02330 PF02142 MGS-like domain M2904_02330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2904_02330 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M2904_02335 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B M2904_02335 PF00970 Oxidoreductase FAD-binding domain M2904_02340 PF01180 Dihydroorotate dehydrogenase M2904_02345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M2904_02350 PF00156 Phosphoribosyl transferase domain M2904_02355 PF00194 Eukaryotic-type carbonic anhydrase M2904_02360 PF00999 Sodium/hydrogen exchanger family M2904_02360 PF02080 TrkA-C domain M2904_02360 PF02254 TrkA-N domain M2904_02365 PF12849 PBP superfamily domain M2904_02370 PF00072 Response regulator receiver domain M2904_02370 PF00486 Transcriptional regulatory protein, C terminal M2904_02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_02375 PF00672 HAMP domain M2904_02375 PF18698 Histidine kinase sensor domain M2904_02375 PF00989 PAS fold M2904_02375 PF00512 His Kinase A (phospho-acceptor) domain M2904_02380 PF00654 Voltage gated chloride channel M2904_02390 PF07687 Peptidase dimerisation domain M2904_02390 PF01546 Peptidase family M20/M25/M40 M2904_02395 PF02390 Putative methyltransferase M2904_02405 PF02378 Phosphotransferase system, EIIC M2904_02405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2904_02410 PF08279 HTH domain M2904_02410 PF05043 Mga helix-turn-helix domain M2904_02410 PF00874 PRD domain M2904_02410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_02410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2904_02415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_02420 PF01232 Mannitol dehydrogenase Rossmann domain M2904_02420 PF08125 Mannitol dehydrogenase C-terminal domain M2904_02425 PF00528 Binding-protein-dependent transport system inner membrane component M2904_02430 PF00528 Binding-protein-dependent transport system inner membrane component M2904_02435 PF00497 Bacterial extracellular solute-binding proteins, family 3 M2904_02440 PF00005 ABC transporter M2904_02455 PF01757 Acyltransferase family M2904_02460 PF01594 AI-2E family transporter M2904_02465 PF06855 YozE SAM-like fold M2904_02470 PF01625 Peptide methionine sulfoxide reductase M2904_02475 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) M2904_02480 PF13472 GDSL-like Lipase/Acylhydrolase family M2904_02485 PF02645 Uncharacterised protein, DegV family COG1307 M2904_02490 PF03006 Haemolysin-III related M2904_02495 PF01177 Asp/Glu/Hydantoin racemase M2904_02505 PF02875 Mur ligase family, glutamate ligase domain M2904_02505 PF08245 Mur ligase middle domain M2904_02510 PF00733 Asparagine synthase M2904_02510 PF13537 Glutamine amidotransferase domain M2904_02515 PF00186 Dihydrofolate reductase M2904_02520 PF00303 Thymidylate synthase M2904_02525 PF12848 ABC transporter M2904_02525 PF00005 ABC transporter M2904_02525 PF16326 ABC transporter C-terminal domain M2904_02530 PF00128 Alpha amylase, catalytic domain M2904_02530 PF16657 Maltogenic Amylase, C-terminal domain M2904_02535 PF00128 Alpha amylase, catalytic domain M2904_02535 PF16657 Maltogenic Amylase, C-terminal domain M2904_02550 PF12627 Probable RNA and SrmB- binding site of polymerase A M2904_02550 PF13735 tRNA nucleotidyltransferase domain 2 putative M2904_02550 PF01743 Poly A polymerase head domain M2904_02555 PF03819 MazG nucleotide pyrophosphohydrolase domain M2904_02560 PF00309 Sigma-54 factor, Activator interacting domain (AID) M2904_02560 PF04963 Sigma-54 factor, core binding domain M2904_02560 PF04552 Sigma-54, DNA binding domain M2904_02585 PF00583 Acetyltransferase (GNAT) family M2904_02585 PF01047 MarR family M2904_02590 PF02687 FtsX-like permease family M2904_02595 PF00005 ABC transporter M2904_02600 PF00171 Aldehyde dehydrogenase family M2904_02605 PF13419 Haloacid dehalogenase-like hydrolase M2904_02610 PF03633 Glycosyl hydrolase family 65, C-terminal domain M2904_02610 PF03632 Glycosyl hydrolase family 65 central catalytic domain M2904_02610 PF03636 Glycosyl hydrolase family 65, N-terminal domain M2904_02620 PF00528 Binding-protein-dependent transport system inner membrane component M2904_02625 PF00528 Binding-protein-dependent transport system inner membrane component M2904_02630 PF13416 Bacterial extracellular solute-binding protein M2904_02635 PF00128 Alpha amylase, catalytic domain M2904_02635 PF02903 Alpha amylase, N-terminal ig-like domain M2904_02640 PF01546 Peptidase family M20/M25/M40 M2904_02645 PF00085 Thioredoxin M2904_02650 PF05636 HIGH Nucleotidyl Transferase M2904_02655 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_02660 PF01554 MatE M2904_02665 PF00664 ABC transporter transmembrane region M2904_02665 PF00005 ABC transporter M2904_02670 PF00005 ABC transporter M2904_02670 PF00664 ABC transporter transmembrane region M2904_02675 PF03672 Uncharacterised protein family (UPF0154) M2904_02680 PF01261 Xylose isomerase-like TIM barrel M2904_02685 PF01479 S4 domain M2904_02685 PF00579 tRNA synthetases class I (W and Y) M2904_02690 PF00912 Transglycosylase M2904_02690 PF00905 Penicillin binding protein transpeptidase domain M2904_02695 PF00356 Bacterial regulatory proteins, lacI family M2904_02700 PF01321 Creatinase/Prolidase N-terminal domain M2904_02700 PF00557 Metallopeptidase family M24 M2904_02705 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_02710 PF01297 Zinc-uptake complex component A periplasmic M2904_02710 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment M2904_02715 PF00226 DnaJ domain M2904_02715 PF01556 DnaJ C terminal domain M2904_02715 PF00684 DnaJ central domain M2904_02720 PF00012 Hsp70 protein M2904_02725 PF01025 GrpE M2904_02730 PF01628 HrcA protein C terminal domain M2904_02735 PF06969 HemN C-terminal domain M2904_02735 PF04055 Radical SAM superfamily M2904_02740 PF06574 FAD synthetase M2904_02740 PF01687 Riboflavin kinase M2904_02745 PF16198 tRNA pseudouridylate synthase B C-terminal domain M2904_02745 PF01509 TruB family pseudouridylate synthase (N terminal domain) M2904_02750 PF02033 Ribosome-binding factor A M2904_02755 PF11987 Translation-initiation factor 2 M2904_02755 PF04760 Translation initiation factor IF-2, N-terminal region M2904_02755 PF00009 Elongation factor Tu GTP binding domain M2904_02760 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family M2904_02765 PF04296 Protein of unknown function (DUF448) M2904_02770 PF13184 NusA-like KH domain M2904_02770 PF00575 S1 RNA binding domain M2904_02770 PF08529 NusA N-terminal domain M2904_02775 PF02576 RimP N-terminal domain M2904_02775 PF17384 RimP C-terminal SH3 domain M2904_02785 PF00291 Pyridoxal-phosphate dependent enzyme M2904_02790 PF00596 Class II Aldolase and Adducin N-terminal domain M2904_02795 PF01008 Initiation factor 2 subunit family M2904_02800 PF01636 Phosphotransferase enzyme family M2904_02805 PF00689 Cation transporting ATPase, C-terminus M2904_02805 PF00690 Cation transporter/ATPase, N-terminus M2904_02855 PF02899 Phage integrase, N-terminal SAM-like domain M2904_02855 PF00589 Phage integrase family M2904_02860 PF00679 Elongation factor G C-terminus M2904_02860 PF00009 Elongation factor Tu GTP binding domain M2904_02860 PF03144 Elongation factor Tu domain 2 M2904_02860 PF06421 GTP-binding protein LepA C-terminus M2904_02870 PF00004 ATPase family associated with various cellular activities (AAA) M2904_02870 PF02861 Clp amino terminal domain, pathogenicity island component M2904_02870 PF17871 AAA lid domain M2904_02870 PF10431 C-terminal, D2-small domain, of ClpB protein M2904_02870 PF07724 AAA domain (Cdc48 subfamily) M2904_02885 PF07687 Peptidase dimerisation domain M2904_02885 PF01546 Peptidase family M20/M25/M40 M2904_02890 PF01784 NIF3 (NGG1p interacting factor 3) M2904_02895 PF04816 tRNA (adenine(22)-N(1))-methyltransferase M2904_02910 PF00140 Sigma-70 factor, region 1.2 M2904_02910 PF04545 Sigma-70, region 4 M2904_02910 PF03979 Sigma-70 factor, region 1.1 M2904_02910 PF04539 Sigma-70 region 3 M2904_02910 PF04542 Sigma-70 region 2 M2904_02915 PF08275 DNA primase catalytic core, N-terminal domain M2904_02915 PF01807 CHC2 zinc finger M2904_02915 PF10410 DnaB-helicase binding domain of primase M2904_02920 PF05746 DALR anticodon binding domain M2904_02920 PF02092 Glycyl-tRNA synthetase beta subunit M2904_02925 PF02091 Glycyl-tRNA synthetase alpha subunit M2904_02930 PF02565 Recombination protein O C terminal M2904_02930 PF11967 Recombination protein O N terminal M2904_02935 PF01926 50S ribosome-binding GTPase M2904_02935 PF07650 KH domain M2904_02940 PF01219 Prokaryotic diacylglycerol kinase M2904_02945 PF02130 Uncharacterized protein family UPF0054 M2904_02950 PF07698 7TM receptor with intracellular HD hydrolase M2904_02950 PF07697 7TM-HD extracellular M2904_02950 PF01966 HD domain M2904_02955 PF02562 PhoH-like protein M2904_02960 PF04055 Radical SAM superfamily M2904_02965 PF00999 Sodium/hydrogen exchanger family M2904_02975 PF07556 Protein of unknown function (DUF1538) M2904_02980 PF17854 FtsK alpha domain M2904_02980 PF09397 Ftsk gamma domain M2904_02980 PF01580 FtsK/SpoIIIE family M2904_02985 PF01131 DNA topoisomerase M2904_02985 PF01751 Toprim domain M2904_02995 PF03180 NLPA lipoprotein M2904_03000 PF00528 Binding-protein-dependent transport system inner membrane component M2904_03005 PF09383 NIL domain M2904_03005 PF00005 ABC transporter M2904_03010 PF01597 Glycine cleavage H-protein M2904_03015 PF03960 ArsC family M2904_03020 PF01098 Cell cycle protein M2904_03045 PF00464 Serine hydroxymethyltransferase M2904_03050 PF01300 Telomere recombination M2904_03050 PF03481 Putative GTP-binding controlling metal-binding M2904_03055 PF17827 PrmC N-terminal domain M2904_03055 PF05175 Methyltransferase small domain M2904_03060 PF03462 PCRF domain M2904_03060 PF00472 RF-1 domain M2904_03065 PF00265 Thymidine kinase M2904_03070 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M2904_03075 PF01746 tRNA (Guanine-1)-methyltransferase M2904_03080 PF05239 PRC-barrel domain M2904_03080 PF01782 RimM N-terminal domain M2904_03090 PF00886 Ribosomal protein S16 M2904_03095 PF00448 SRP54-type protein, GTPase domain M2904_03095 PF02881 SRP54-type protein, helical bundle domain M2904_03095 PF02978 Signal peptide binding domain M2904_03100 PF04297 Putative helix-turn-helix protein, YlxM / p13 like M2904_03105 PF00293 NUDIX domain M2904_03110 PF00155 Aminotransferase class I and II M2904_03115 PF03989 DNA gyrase C-terminal domain, beta-propeller M2904_03115 PF00521 DNA gyrase/topoisomerase IV, subunit A M2904_03120 PF01751 Toprim domain M2904_03120 PF00986 DNA gyrase B subunit, carboxyl terminus M2904_03120 PF00204 DNA gyrase B M2904_03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_03125 PF00842 Alanine racemase, C-terminal domain M2904_03125 PF01168 Alanine racemase, N-terminal domain M2904_03130 PF02660 Glycerol-3-phosphate acyltransferase M2904_03135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M2904_03135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M2904_03145 PF06018 CodY GAF-like domain M2904_03145 PF08222 CodY helix-turn-helix domain M2904_03150 PF00004 ATPase family associated with various cellular activities (AAA) M2904_03150 PF07724 AAA domain (Cdc48 subfamily) M2904_03150 PF10431 C-terminal, D2-small domain, of ClpB protein M2904_03155 PF00227 Proteasome subunit M2904_03160 PF02899 Phage integrase, N-terminal SAM-like domain M2904_03160 PF00589 Phage integrase family M2904_03170 PF01134 Glucose inhibited division protein A M2904_03175 PF01131 DNA topoisomerase M2904_03175 PF01751 Toprim domain M2904_03175 PF01396 Topoisomerase DNA binding C4 zinc finger M2904_03180 PF18255 DNA processing protein A sterile alpha motif domain M2904_03180 PF02481 DNA recombination-mediator protein A M2904_03185 PF01351 Ribonuclease HII M2904_03190 PF01926 50S ribosome-binding GTPase M2904_03195 PF10502 Signal peptidase, peptidase S26 M2904_03200 PF17820 PDZ domain M2904_03200 PF03572 Peptidase family S41 M2904_03200 PF01471 Putative peptidoglycan binding domain M2904_03205 PF02887 Pyruvate kinase, alpha/beta domain M2904_03205 PF00224 Pyruvate kinase, barrel domain M2904_03205 PF00391 PEP-utilising enzyme, mobile domain M2904_03210 PF00365 Phosphofructokinase M2904_03215 PF07733 Bacterial DNA polymerase III alpha NTPase domain M2904_03215 PF01336 OB-fold nucleic acid binding domain M2904_03215 PF02811 PHP domain M2904_03215 PF14579 Helix-hairpin-helix motif M2904_03215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M2904_03225 PF07690 Major Facilitator Superfamily M2904_03230 PF00232 Glycosyl hydrolase family 1 M2904_03235 PF02645 Uncharacterised protein, DegV family COG1307 M2904_03240 PF03816 Cell envelope-related transcriptional attenuator domain M2904_03245 PF01202 Shikimate kinase M2904_03250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M2904_03255 PF01264 Chorismate synthase M2904_03260 PF01761 3-dehydroquinate synthase M2904_03265 PF00793 DAHP synthetase I family M2904_03265 PF18152 DAHP synthase ferredoxin-like domain M2904_03270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M2904_03270 PF08501 Shikimate dehydrogenase substrate binding domain M2904_03285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M2904_03285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M2904_03290 PF01812 5-formyltetrahydrofolate cyclo-ligase family M2904_03300 PF02347 Glycine cleavage system P-protein M2904_03305 PF02347 Glycine cleavage system P-protein M2904_03310 PF01597 Glycine cleavage H-protein M2904_03315 PF01571 Aminomethyltransferase folate-binding domain M2904_03315 PF08669 Glycine cleavage T-protein C-terminal barrel domain M2904_03330 PF00924 Mechanosensitive ion channel M2904_03335 PF05343 M42 glutamyl aminopeptidase M2904_03340 PF00860 Permease family M2904_03345 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M2904_03350 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M2904_03355 PF01039 Carboxyl transferase domain M2904_03360 PF06857 Malonate decarboxylase delta subunit (MdcD) M2904_03365 PF16957 Malonate decarboxylase, alpha subunit, transporter M2904_03370 PF00698 Acyl transferase domain M2904_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2904_03375 PF03466 LysR substrate binding domain M2904_03385 PF00005 ABC transporter M2904_03385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_03390 PF00005 ABC transporter M2904_03390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_03395 PF00528 Binding-protein-dependent transport system inner membrane component M2904_03395 PF12911 N-terminal TM domain of oligopeptide transport permease C M2904_03400 PF00528 Binding-protein-dependent transport system inner membrane component M2904_03405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M2904_03410 PF01546 Peptidase family M20/M25/M40 M2904_03410 PF07687 Peptidase dimerisation domain M2904_03420 PF12850 Calcineurin-like phosphoesterase superfamily domain M2904_03425 PF01138 3' exoribonuclease family, domain 1 M2904_03425 PF03725 3' exoribonuclease family, domain 2 M2904_03430 PF01177 Asp/Glu/Hydantoin racemase M2904_03435 PF01588 Putative tRNA binding domain M2904_03435 PF03483 B3/4 domain M2904_03435 PF03484 tRNA synthetase B5 domain M2904_03435 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M2904_03435 PF03147 Ferredoxin-fold anticodon binding domain M2904_03440 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M2904_03440 PF01409 tRNA synthetases class II core domain (F) M2904_03445 PF01638 HxlR-like helix-turn-helix M2904_03455 PF00588 SpoU rRNA Methylase family M2904_03455 PF08032 RNA 2'-O ribose methyltransferase substrate binding M2904_03460 PF00708 Acylphosphatase M2904_03465 PF02096 60Kd inner membrane protein M2904_03475 PF00512 His Kinase A (phospho-acceptor) domain M2904_03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_03475 PF18719 ArlS sensor domain M2904_03480 PF00486 Transcriptional regulatory protein, C terminal M2904_03480 PF00072 Response regulator receiver domain M2904_03485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2904_03485 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M2904_03490 PF01783 Ribosomal L32p protein family M2904_03500 PF07319 Primosomal protein DnaI N-terminus M2904_03500 PF01695 IstB-like ATP binding protein M2904_03510 PF03477 ATP cone domain M2904_03515 PF01121 Dephospho-CoA kinase M2904_03520 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M2904_03520 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M2904_03520 PF06827 Zinc finger found in FPG and IleRS M2904_03525 PF01367 5'-3' exonuclease, C-terminal SAM fold M2904_03525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M2904_03525 PF00476 DNA polymerase family A M2904_03530 PF01027 Inhibitor of apoptosis-promoting Bax1 M2904_03535 PF01225 Mur ligase family, catalytic domain M2904_03535 PF08245 Mur ligase middle domain M2904_03535 PF02875 Mur ligase family, glutamate ligase domain M2904_03550 PF01411 tRNA synthetases class II (A) M2904_03550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M2904_03550 PF02272 DHHA1 domain M2904_03555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2904_03555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2904_03555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2904_03555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2904_03565 PF02457 DisA bacterial checkpoint controller nucleotide-binding M2904_03570 PF10263 SprT-like family M2904_03575 PF09371 Tex-like protein N-terminal domain M2904_03575 PF16921 Tex protein YqgF-like domain M2904_03575 PF00575 S1 RNA binding domain M2904_03575 PF17674 HHH domain M2904_03585 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_03585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_03590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2904_03590 PF00364 Biotin-requiring enzyme M2904_03590 PF02817 e3 binding domain M2904_03595 PF02779 Transketolase, pyrimidine binding domain M2904_03595 PF02780 Transketolase, C-terminal domain M2904_03600 PF00676 Dehydrogenase E1 component M2904_03605 PF00690 Cation transporter/ATPase, N-terminus M2904_03605 PF00689 Cation transporting ATPase, C-terminus M2904_03610 PF02386 Cation transport protein M2904_03615 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family M2904_03620 PF00248 Aldo/keto reductase family M2904_03630 PF02222 ATP-grasp domain M2904_03630 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M2904_03630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M2904_03635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M2904_03635 PF13457 GW (Gly-Tryp) dipeptide domain M2904_03640 PF02557 D-alanyl-D-alanine carboxypeptidase M2904_03650 PF06081 Aromatic acid exporter family member 1 M2904_03650 PF11728 Putative aromatic acid exporter C-terminal domain M2904_03665 PF01145 SPFH domain / Band 7 family M2904_03665 PF15975 Flotillin M2904_03680 PF00005 ABC transporter M2904_03700 PF05066 HB1, ASXL, restriction endonuclease HTH domain M2904_03710 PF03099 Biotin/lipoate A/B protein ligase family M2904_03715 PF01966 HD domain M2904_03725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M2904_03735 PF09424 Yqey-like protein M2904_03740 PF01165 Ribosomal protein S21 M2904_03745 PF01475 Ferric uptake regulator family M2904_03750 PF03618 Kinase/pyrophosphorylase M2904_03755 PF00005 ABC transporter M2904_03760 PF02653 Branched-chain amino acid transport system / permease component M2904_03775 PF05670 NFACT protein RNA binding domain M2904_03780 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV M2904_03795 PF01895 PhoU domain M2904_03800 PF00005 ABC transporter M2904_03805 PF00005 ABC transporter M2904_03810 PF00528 Binding-protein-dependent transport system inner membrane component M2904_03815 PF00528 Binding-protein-dependent transport system inner membrane component M2904_03820 PF12849 PBP superfamily domain M2904_03825 PF18075 FtsX extracellular domain M2904_03825 PF02687 FtsX-like permease family M2904_03830 PF00005 ABC transporter M2904_03840 PF02810 SEC-C motif M2904_03840 PF07517 SecA DEAD-like domain M2904_03840 PF01043 SecA preprotein cross-linking domain M2904_03840 PF07516 SecA Wing and Scaffold domain M2904_03845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M2904_03845 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus M2904_03855 PF04851 Type III restriction enzyme, res subunit M2904_03855 PF00271 Helicase conserved C-terminal domain M2904_03860 PF12146 Serine aminopeptidase, S33 M2904_03870 PF01205 Uncharacterized protein family UPF0029 M2904_03870 PF09186 Domain of unknown function (DUF1949) M2904_03875 PF07702 UTRA domain M2904_03875 PF00392 Bacterial regulatory proteins, gntR family M2904_03880 PF12705 PD-(D/E)XK nuclease superfamily M2904_03880 PF00580 UvrD/REP helicase N-terminal domain M2904_03880 PF13361 UvrD-like helicase C-terminal domain M2904_03885 PF12705 PD-(D/E)XK nuclease superfamily M2904_03890 PF10502 Signal peptidase, peptidase S26 M2904_03895 PF02779 Transketolase, pyrimidine binding domain M2904_03895 PF02780 Transketolase, C-terminal domain M2904_03895 PF00456 Transketolase, thiamine diphosphate binding domain M2904_03900 PF05979 Bacterial protein of unknown function (DUF896) M2904_03905 PF00717 Peptidase S24-like M2904_03905 PF01726 LexA DNA binding domain M2904_03915 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M2904_03915 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M2904_03920 PF13419 Haloacid dehalogenase-like hydrolase M2904_03925 PF01790 Prolipoprotein diacylglyceryl transferase M2904_03930 PF07475 HPr Serine kinase C-terminal domain M2904_03930 PF02603 HPr Serine kinase N terminus M2904_03960 PF00571 CBS domain M2904_03965 PF00005 ABC transporter M2904_03970 PF00005 ABC transporter M2904_03970 PF12399 Branched-chain amino acid ATP-binding cassette transporter M2904_03975 PF02653 Branched-chain amino acid transport system / permease component M2904_03975 PF11862 Domain of unknown function (DUF3382) M2904_03980 PF02653 Branched-chain amino acid transport system / permease component M2904_03985 PF13458 Periplasmic binding protein M2904_03995 PF01809 Putative membrane protein insertion efficiency factor M2904_04005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M2904_04020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M2904_04020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M2904_04025 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2904_04025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2904_04030 PF00231 ATP synthase M2904_04035 PF00306 ATP synthase alpha/beta chain, C terminal domain M2904_04035 PF02874 ATP synthase alpha/beta family, beta-barrel domain M2904_04035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2904_04040 PF00213 ATP synthase delta (OSCP) subunit M2904_04045 PF00430 ATP synthase B/B' CF(0) M2904_04050 PF00137 ATP synthase subunit C M2904_04055 PF00119 ATP synthase A chain M2904_04060 PF01668 SmpB protein M2904_04065 PF17876 Cold shock domain M2904_04065 PF08206 Ribonuclease B OB domain M2904_04065 PF00773 RNB domain M2904_04065 PF00575 S1 RNA binding domain M2904_04070 PF12146 Serine aminopeptidase, S33 M2904_04075 PF03840 Preprotein translocase SecG subunit M2904_04080 PF03841 L-seryl-tRNA selenium transferase M2904_04085 PF09105 Elongation factor SelB, winged helix M2904_04085 PF09106 Elongation factor SelB, winged helix M2904_04085 PF09107 Elongation factor SelB, winged helix M2904_04085 PF03144 Elongation factor Tu domain 2 M2904_04085 PF00009 Elongation factor Tu GTP binding domain M2904_04095 PF00586 AIR synthase related protein, N-terminal domain M2904_04095 PF02769 AIR synthase related protein, C-terminal domain M2904_04110 PF04226 Transglycosylase associated protein M2904_04155 PF00575 S1 RNA binding domain M2904_04160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M2904_04165 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_04170 PF04608 Phosphatidylglycerophosphatase A M2904_04180 PF13344 Haloacid dehalogenase-like hydrolase M2904_04185 PF06265 Protein of unknown function (DUF1027) M2904_04195 PF13350 Tyrosine phosphatase family M2904_04210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M2904_04215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_04215 PF00005 ABC transporter M2904_04220 PF00005 ABC transporter M2904_04220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M2904_04225 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04225 PF12911 N-terminal TM domain of oligopeptide transport permease C M2904_04230 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04245 PF00210 Ferritin-like domain M2904_04250 PF00085 Thioredoxin M2904_04255 PF01713 Smr domain M2904_04255 PF00488 MutS domain V M2904_04265 PF05164 Cell division protein ZapA M2904_04270 PF11858 Domain of unknown function (DUF3378) M2904_04270 PF01351 Ribonuclease HII M2904_04275 PF06486 Protein of unknown function (DUF1093) M2904_04285 PF00817 impB/mucB/samB family M2904_04285 PF11799 impB/mucB/samB family C-terminal domain M2904_04285 PF11798 IMS family HHH motif M2904_04300 PF06949 Protein of unknown function (DUF1292) M2904_04305 PF03652 Holliday junction resolvase M2904_04310 PF06135 IreB regulatory phosphoprotein M2904_04315 PF01588 Putative tRNA binding domain M2904_04315 PF14794 Domain of unknown function (DUF4479) M2904_04320 PF00582 Universal stress protein family M2904_04325 PF00085 Thioredoxin M2904_04330 PF05343 M42 glutamyl aminopeptidase M2904_04340 PF02056 Family 4 glycosyl hydrolase M2904_04340 PF11975 Family 4 glycosyl hydrolase C-terminal domain M2904_04345 PF01380 SIS domain M2904_04350 PF02378 Phosphotransferase system, EIIC M2904_04355 PF02390 Putative methyltransferase M2904_04360 PF01636 Phosphotransferase enzyme family M2904_04370 PF00005 ABC transporter M2904_04375 PF01230 HIT domain M2904_04385 PF13145 PPIC-type PPIASE domain M2904_04390 PF01966 HD domain M2904_04395 PF06133 Control of competence regulator ComK, YlbF/YmcA M2904_04400 PF00905 Penicillin binding protein transpeptidase domain M2904_04400 PF00912 Transglycosylase M2904_04405 PF00849 RNA pseudouridylate synthase M2904_04405 PF01479 S4 domain M2904_04410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2904_04410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2904_04410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2904_04410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2904_04415 PF02863 Arginine repressor, C-terminal domain M2904_04415 PF01316 Arginine repressor, DNA binding domain M2904_04420 PF00750 tRNA synthetases class I (R) M2904_04420 PF03485 Arginyl tRNA synthetase N terminal domain M2904_04420 PF05746 DALR anticodon binding domain M2904_04425 PF06177 QueT transporter M2904_04435 PF00005 ABC transporter M2904_04440 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M2904_04445 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04450 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_04450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_04455 PF04143 Sulphur transport M2904_04460 PF03466 LysR substrate binding domain M2904_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2904_04465 PF00781 Diacylglycerol kinase catalytic domain M2904_04470 PF14490 Helix-hairpin-helix containing domain M2904_04470 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain M2904_04470 PF13538 UvrD-like helicase C-terminal domain M2904_04475 PF05362 Lon protease (S16) C-terminal proteolytic domain M2904_04475 PF13180 PDZ domain M2904_04480 PF01467 Cytidylyltransferase-like M2904_04490 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) M2904_04505 PF00364 Biotin-requiring enzyme M2904_04505 PF02436 Conserved carboxylase domain M2904_04505 PF00682 HMGL-like M2904_04505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M2904_04505 PF00289 Biotin carboxylase, N-terminal domain M2904_04505 PF02785 Biotin carboxylase C-terminal domain M2904_04510 PF01098 Cell cycle protein M2904_04515 PF07408 Protein of unknown function (DUF1507) M2904_04520 PF06125 Bacterial protein of unknown function (DUF961) M2904_04540 PF02486 Replication initiation factor M2904_04540 PF18106 Rolling Circle replication initiation protein N-terminal domain M2904_04570 PF00877 NlpC/P60 family M2904_04585 PF00009 Elongation factor Tu GTP binding domain M2904_04585 PF00679 Elongation factor G C-terminus M2904_04585 PF03764 Elongation factor G, domain IV M2904_04585 PF14492 Elongation Factor G, domain II M2904_04615 PF09035 Excisionase from transposon Tn916 M2904_04620 PF00589 Phage integrase family M2904_04620 PF02920 DNA binding domain of tn916 integrase M2904_04625 PF00890 FAD binding domain M2904_04625 PF14537 Cytochrome c3 M2904_04630 PF01226 Formate/nitrite transporter M2904_04635 PF03180 NLPA lipoprotein M2904_04640 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04645 PF00005 ABC transporter M2904_04645 PF09383 NIL domain M2904_04650 PF03070 TENA/THI-4/PQQC family M2904_04655 PF09084 NMT1/THI5 like M2904_04660 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04665 PF00005 ABC transporter M2904_04675 PF02581 Thiamine monophosphate synthase M2904_04680 PF08543 Phosphomethylpyrimidine kinase M2904_04685 PF02110 Hydroxyethylthiazole kinase family M2904_04695 PF07724 AAA domain (Cdc48 subfamily) M2904_04695 PF10431 C-terminal, D2-small domain, of ClpB protein M2904_04695 PF06689 ClpX C4-type zinc finger M2904_04700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M2904_04700 PF05698 Bacterial trigger factor protein (TF) C-terminus M2904_04700 PF05697 Bacterial trigger factor protein (TF) M2904_04710 PF06271 RDD family M2904_04715 PF01343 Peptidase family S49 M2904_04720 PF08796 Protein of unknown function (DUF1797) M2904_04725 PF01301 Glycosyl hydrolases family 35 M2904_04730 PF03610 PTS system fructose IIA component M2904_04735 PF03613 PTS system mannose/fructose/sorbose family IID component M2904_04740 PF03609 PTS system sorbose-specific iic component M2904_04745 PF03830 PTS system sorbose subfamily IIB component M2904_04750 PF00294 pfkB family carbohydrate kinase M2904_04755 PF01791 DeoC/LacD family aldolase M2904_04760 PF01380 SIS domain M2904_04765 PF00392 Bacterial regulatory proteins, gntR family M2904_04765 PF07702 UTRA domain M2904_04770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M2904_04770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2904_04780 PF00534 Glycosyl transferases group 1 M2904_04780 PF13439 Glycosyltransferase Family 4 M2904_04785 PF13439 Glycosyltransferase Family 4 M2904_04785 PF00534 Glycosyl transferases group 1 M2904_04790 PF05524 PEP-utilising enzyme, N-terminal M2904_04790 PF02896 PEP-utilising enzyme, TIM barrel domain M2904_04790 PF00391 PEP-utilising enzyme, mobile domain M2904_04795 PF00381 PTS HPr component phosphorylation site M2904_04805 PF00004 ATPase family associated with various cellular activities (AAA) M2904_04805 PF07724 AAA domain (Cdc48 subfamily) M2904_04805 PF17871 AAA lid domain M2904_04805 PF10431 C-terminal, D2-small domain, of ClpB protein M2904_04815 PF06838 Methionine gamma-lyase M2904_04820 PF13167 GTP-binding GTPase N-terminal M2904_04820 PF16360 GTP-binding GTPase Middle Region M2904_04820 PF01926 50S ribosome-binding GTPase M2904_04830 PF03009 Glycerophosphoryl diester phosphodiesterase family M2904_04840 PF00313 'Cold-shock' DNA-binding domain M2904_04845 PF04002 RadC-like JAB domain M2904_04850 PF13419 Haloacid dehalogenase-like hydrolase M2904_04855 PF02875 Mur ligase family, glutamate ligase domain M2904_04855 PF08245 Mur ligase middle domain M2904_04860 PF08264 Anticodon-binding domain of tRNA M2904_04860 PF00133 tRNA synthetases class I (I, L, M and V) M2904_04860 PF10458 Valyl tRNA synthetase tRNA binding arm M2904_04865 PF08534 Redoxin M2904_04870 PF02629 CoA binding domain M2904_04870 PF06971 Putative DNA-binding protein N-terminus M2904_04875 PF02568 Thiamine biosynthesis protein (ThiI) M2904_04875 PF02926 THUMP domain M2904_04880 PF00266 Aminotransferase class-V M2904_04885 PF06160 Septation ring formation regulator, EzrA M2904_04895 PF01904 Protein of unknown function DUF72 M2904_04900 PF00710 Asparaginase, N-terminal M2904_04900 PF17763 Glutaminase/Asparaginase C-terminal domain M2904_04910 PF00342 Phosphoglucose isomerase M2904_04915 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M2904_04915 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M2904_04930 PF12833 Helix-turn-helix domain M2904_04935 PF07690 Major Facilitator Superfamily M2904_04940 PF07687 Peptidase dimerisation domain M2904_04940 PF01546 Peptidase family M20/M25/M40 M2904_04945 PF04073 Aminoacyl-tRNA editing domain M2904_04950 PF01487 Type I 3-dehydroquinase M2904_04955 PF10672 S-adenosylmethionine-dependent methyltransferase M2904_04955 PF17785 PUA-like domain M2904_04960 PF00884 Sulfatase M2904_04970 PF00528 Binding-protein-dependent transport system inner membrane component M2904_04975 PF00497 Bacterial extracellular solute-binding proteins, family 3 M2904_04980 PF01425 Amidase M2904_04985 PF00884 Sulfatase M2904_04990 PF02540 NAD synthase M2904_04995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M2904_04995 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain M2904_04995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M2904_05000 PF00588 SpoU rRNA Methylase family M2904_05005 PF08241 Methyltransferase domain M2904_05010 PF03932 CutC family M2904_05015 PF00571 CBS domain M2904_05015 PF01769 Divalent cation transporter M2904_05015 PF03448 MgtE intracellular N domain M2904_05020 PF00849 RNA pseudouridylate synthase M2904_05025 PF01513 ATP-NAD kinase M2904_05030 PF04607 Region found in RelA / SpoT proteins M2904_05035 PF01928 CYTH domain M2904_05045 PF16658 Class II release factor RF3, C-terminal domain M2904_05045 PF03144 Elongation factor Tu domain 2 M2904_05045 PF00009 Elongation factor Tu GTP binding domain M2904_05050 PF01022 Bacterial regulatory protein, arsR family M2904_05055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M2904_05055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M2904_05055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M2904_05055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M2904_05060 PF12704 MacB-like periplasmic core domain M2904_05060 PF00005 ABC transporter M2904_05060 PF02687 FtsX-like permease family M2904_05065 PF12704 MacB-like periplasmic core domain M2904_05065 PF00005 ABC transporter M2904_05065 PF02687 FtsX-like permease family M2904_05075 PF00313 'Cold-shock' DNA-binding domain M2904_05080 PF13407 Periplasmic binding protein domain M2904_05085 PF02653 Branched-chain amino acid transport system / permease component M2904_05090 PF00005 ABC transporter M2904_05095 PF05025 RbsD / FucU transport protein family M2904_05100 PF00294 pfkB family carbohydrate kinase M2904_05105 PF00356 Bacterial regulatory proteins, lacI family M2904_05110 PF05737 Collagen binding domain M2904_05110 PF05738 Cna protein B-type domain M2904_05110 PF17802 Prealbumin-like fold domain M2904_05120 PF00571 CBS domain M2904_05120 PF03471 Transporter associated domain M2904_05120 PF01595 Cyclin M transmembrane N-terminal domain M2904_05125 PF01594 AI-2E family transporter M2904_05145 PF00480 ROK family M2904_05150 PF08244 Glycosyl hydrolases family 32 C terminal M2904_05150 PF00251 Glycosyl hydrolases family 32 N-terminal domain M2904_05155 PF00528 Binding-protein-dependent transport system inner membrane component M2904_05160 PF00528 Binding-protein-dependent transport system inner membrane component M2904_05165 PF13416 Bacterial extracellular solute-binding protein M2904_05170 PF00356 Bacterial regulatory proteins, lacI family M2904_05175 PF04167 Protein of unknown function (DUF402) M2904_05220 PF09924 Uncharacterised conserved protein (DUF2156) M2904_05220 PF03706 Lysylphosphatidylglycerol synthase TM region M2904_05225 PF00730 HhH-GPD superfamily base excision DNA repair protein M2904_05225 PF14815 NUDIX domain M2904_05230 PF02631 RecX family M2904_05265 PF01370 NAD dependent epimerase/dehydratase family M2904_05270 PF02350 UDP-N-acetylglucosamine 2-epimerase M2904_05275 PF00483 Nucleotidyl transferase M2904_05280 PF03816 Cell envelope-related transcriptional attenuator domain M2904_05285 PF04321 RmlD substrate binding domain M2904_05295 PF16363 GDP-mannose 4,6 dehydratase M2904_05300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M2904_05305 PF00483 Nucleotidyl transferase M2904_05310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M2904_05310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M2904_05310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M2904_05315 PF01370 NAD dependent epimerase/dehydratase family M2904_05325 PF00535 Glycosyl transferase family 2 M2904_05330 PF13439 Glycosyltransferase Family 4 M2904_05330 PF00534 Glycosyl transferases group 1 M2904_05350 PF02397 Bacterial sugar transferase M2904_05355 PF02719 Polysaccharide biosynthesis protein M2904_05365 PF13614 AAA domain M2904_05370 PF13807 G-rich domain on putative tyrosine kinase M2904_05370 PF02706 Chain length determinant protein M2904_05405 PF00535 Glycosyl transferase family 2 M2904_05405 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase M2904_05410 PF01467 Cytidylyltransferase-like M2904_05415 PF00535 Glycosyl transferase family 2 M2904_05415 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase M2904_05420 PF01467 Cytidylyltransferase-like M2904_05425 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase M2904_05430 PF01061 ABC-2 type transporter M2904_05435 PF03808 Glycosyl transferase WecB/TagA/CpsF family M2904_05440 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase M2904_05445 PF00005 ABC transporter M2904_05450 PF03816 Cell envelope-related transcriptional attenuator domain M2904_05455 PF00953 Glycosyl transferase family 4 M2904_05460 PF03631 Virulence factor BrkB M2904_05465 PF00557 Metallopeptidase family M24 M2904_05470 PF00258 Flavodoxin M2904_05480 PF02073 Thermophilic metalloprotease (M29) M2904_05505 PF02378 Phosphotransferase system, EIIC M2904_05510 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M2904_05515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2904_05520 PF00158 Sigma-54 interaction domain M2904_05520 PF03610 PTS system fructose IIA component M2904_05520 PF00874 PRD domain M2904_05525 PF00270 DEAD/DEAH box helicase M2904_05525 PF00271 Helicase conserved C-terminal domain M2904_05530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M2904_05530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_05540 PF00005 ABC transporter M2904_05540 PF00664 ABC transporter transmembrane region M2904_05545 PF00005 ABC transporter M2904_05545 PF00664 ABC transporter transmembrane region M2904_05550 PF07288 Protein of unknown function (DUF1447) M2904_05555 PF17770 Ribonuclease J C-terminal domain M2904_05555 PF00753 Metallo-beta-lactamase superfamily M2904_05555 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M2904_05560 PF00581 Rhodanese-like domain M2904_05565 PF00480 ROK family M2904_05570 PF01694 Rhomboid family M2904_05580 PF00471 Ribosomal protein L33 M2904_05585 PF00905 Penicillin binding protein transpeptidase domain M2904_05585 PF03717 Penicillin-binding Protein dimerisation domain M2904_05590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2904_05590 PF02824 TGS domain M2904_05590 PF03129 Anticodon binding domain M2904_05590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M2904_05605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M2904_05605 PF00575 S1 RNA binding domain M2904_05605 PF03725 3' exoribonuclease family, domain 2 M2904_05605 PF01138 3' exoribonuclease family, domain 1 M2904_05605 PF00013 KH domain M2904_05610 PF00312 Ribosomal protein S15 M2904_05615 PF01327 Polypeptide deformylase M2904_05620 PF00485 Phosphoribulokinase / Uridine kinase family M2904_05620 PF16874 Glycosyl hydrolase family 36 C-terminal domain M2904_05620 PF16875 Glycosyl hydrolase family 36 N-terminal domain M2904_05625 PF12833 Helix-turn-helix domain M2904_05625 PF02311 AraC-like ligand binding domain M2904_05635 PF00149 Calcineurin-like phosphoesterase M2904_05635 PF02872 5'-nucleotidase, C-terminal domain M2904_05640 PF01418 Helix-turn-helix domain, rpiR family M2904_05640 PF01380 SIS domain M2904_05645 PF10415 Fumarase C C-terminus M2904_05645 PF00206 Lyase M2904_05650 PF00390 Malic enzyme, N-terminal domain M2904_05650 PF03949 Malic enzyme, NAD binding domain M2904_05655 PF10397 Adenylosuccinate lyase C-terminus M2904_05655 PF00206 Lyase M2904_05660 PF00367 phosphotransferase system, EIIB M2904_05660 PF02378 Phosphotransferase system, EIIC M2904_05665 PF00248 Aldo/keto reductase family M2904_05670 PF00962 Adenosine/AMP deaminase M2904_05675 PF00528 Binding-protein-dependent transport system inner membrane component M2904_05680 PF08402 TOBE domain M2904_05680 PF00005 ABC transporter M2904_05690 PF12833 Helix-turn-helix domain M2904_05690 PF00072 Response regulator receiver domain M2904_05695 PF06580 Histidine kinase M2904_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_05700 PF00118 TCP-1/cpn60 chaperonin family M2904_05705 PF00166 Chaperonin 10 Kd subunit M2904_05710 PF02629 CoA binding domain M2904_05710 PF06971 Putative DNA-binding protein N-terminus M2904_05715 PF00005 ABC transporter M2904_05715 PF16326 ABC transporter C-terminal domain M2904_05715 PF12848 ABC transporter M2904_05720 PF00356 Bacterial regulatory proteins, lacI family M2904_05730 PF01368 DHH family M2904_05730 PF02272 DHHA1 domain M2904_05735 PF03061 Thioesterase superfamily M2904_05735 PF00571 CBS domain M2904_05735 PF07085 DRTGG domain M2904_05735 PF00392 Bacterial regulatory proteins, gntR family M2904_05740 PF07690 Major Facilitator Superfamily M2904_05745 PF00753 Metallo-beta-lactamase superfamily M2904_05745 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M2904_05745 PF17770 Ribonuclease J C-terminal domain M2904_05750 PF00664 ABC transporter transmembrane region M2904_05750 PF00005 ABC transporter M2904_05755 PF12419 SNF2 Helicase protein M2904_05755 PF00271 Helicase conserved C-terminal domain M2904_05755 PF00176 SNF2 family N-terminal domain M2904_05760 PF01553 Acyltransferase M2904_05765 PF05175 Methyltransferase small domain M2904_05770 PF01541 GIY-YIG catalytic domain M2904_05795 PF02082 Transcriptional regulator M2904_05800 PF03606 C4-dicarboxylate anaerobic carrier M2904_05805 PF02733 Dak1 domain M2904_05810 PF02734 DAK2 domain M2904_05815 PF03610 PTS system fructose IIA component M2904_05820 PF00465 Iron-containing alcohol dehydrogenase M2904_05825 PF02733 Dak1 domain M2904_05835 PF08279 HTH domain M2904_05835 PF05043 Mga helix-turn-helix domain M2904_05835 PF00874 PRD domain M2904_05835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_05845 PF03613 PTS system mannose/fructose/sorbose family IID component M2904_05850 PF03609 PTS system sorbose-specific iic component M2904_05855 PF03830 PTS system sorbose subfamily IIB component M2904_05860 PF03830 PTS system sorbose subfamily IIB component M2904_05860 PF03610 PTS system fructose IIA component M2904_05865 PF14278 Transcriptional regulator C-terminal region M2904_05865 PF00440 Bacterial regulatory proteins, tetR family M2904_05870 PF05857 TraX protein M2904_05875 PF01791 DeoC/LacD family aldolase M2904_05880 PF04198 Putative sugar-binding domain M2904_05885 PF13192 Thioredoxin domain M2904_05885 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_05890 PF00578 AhpC/TSA family M2904_05895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M2904_05895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M2904_05900 PF00230 Major intrinsic protein M2904_05905 PF01266 FAD dependent oxidoreductase M2904_05905 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M2904_05910 PF00108 Thiolase, N-terminal domain M2904_05910 PF02803 Thiolase, C-terminal domain M2904_05915 PF00005 ABC transporter M2904_05920 PF02687 FtsX-like permease family M2904_05925 PF01906 Putative heavy-metal-binding M2904_05930 PF00753 Metallo-beta-lactamase superfamily M2904_05940 PF11799 impB/mucB/samB family C-terminal domain M2904_05940 PF00817 impB/mucB/samB family M2904_06085 PF01336 OB-fold nucleic acid binding domain M2904_06085 PF00152 tRNA synthetases class II (D, K and N) M2904_06090 PF01207 Dihydrouridine synthase (Dus) M2904_06095 PF01430 Hsp33 protein M2904_06100 PF00004 ATPase family associated with various cellular activities (AAA) M2904_06100 PF17862 AAA+ lid domain M2904_06100 PF06480 FtsH Extracellular M2904_06100 PF01434 Peptidase family M41 M2904_06105 PF00156 Phosphoribosyl transferase domain M2904_06110 PF01171 PP-loop family M2904_06110 PF11734 TilS substrate C-terminal domain M2904_06115 PF00575 S1 RNA binding domain M2904_06125 PF01479 S4 domain M2904_06130 PF14667 Polysaccharide biosynthesis C-terminal domain M2904_06130 PF01943 Polysaccharide biosynthesis protein M2904_06135 PF02559 CarD-like/TRCF domain M2904_06135 PF00270 DEAD/DEAH box helicase M2904_06135 PF00271 Helicase conserved C-terminal domain M2904_06135 PF03461 TRCF domain M2904_06135 PF17757 UvrB interaction domain M2904_06140 PF01195 Peptidyl-tRNA hydrolase M2904_06150 PF00462 Glutaredoxin M2904_06155 PF07972 NrdI Flavodoxin like M2904_06160 PF08343 Ribonucleotide reductase N-terminal M2904_06160 PF00317 Ribonucleotide reductase, all-alpha domain M2904_06160 PF02867 Ribonucleotide reductase, barrel domain M2904_06165 PF00268 Ribonucleotide reductase, small chain M2904_06175 PF02441 Flavoprotein M2904_06175 PF04127 DNA / pantothenate metabolism flavoprotein M2904_06180 PF02441 Flavoprotein M2904_06185 PF12822 ECF transporter, substrate-specific component M2904_06190 PF05389 Negative regulator of genetic competence (MecA) M2904_06195 PF03960 ArsC family M2904_06200 PF00579 tRNA synthetases class I (W and Y) M2904_06205 PF03099 Biotin/lipoate A/B protein ligase family M2904_06205 PF10437 Bacterial lipoate protein ligase C-terminus M2904_06210 PF12706 Beta-lactamase superfamily domain M2904_06215 PF05343 M42 glutamyl aminopeptidase M2904_06225 PF13597 Anaerobic ribonucleoside-triphosphate reductase M2904_06225 PF03477 ATP cone domain M2904_06230 PF00453 Ribosomal protein L20 M2904_06235 PF01632 Ribosomal protein L35 M2904_06240 PF05198 Translation initiation factor IF-3, N-terminal domain M2904_06240 PF00707 Translation initiation factor IF-3, C-terminal domain M2904_06245 PF03167 Uracil DNA glycosylase superfamily M2904_06250 PF00132 Bacterial transferase hexapeptide (six repeats) M2904_06260 PF02525 Flavodoxin-like fold M2904_06265 PF08240 Alcohol dehydrogenase GroES-like domain M2904_06265 PF00107 Zinc-binding dehydrogenase M2904_06270 PF08439 Oligopeptidase F M2904_06270 PF01432 Peptidase family M3 M2904_06280 PF00860 Permease family M2904_06290 PF00485 Phosphoribulokinase / Uridine kinase family M2904_06295 PF08331 Domain of unknown function (DUF1730) M2904_06305 PF00689 Cation transporting ATPase, C-terminus M2904_06305 PF00690 Cation transporter/ATPase, N-terminus M2904_06410 PF03496 ADP-ribosyltransferase exoenzyme M2904_06410 PF04233 Phage Mu protein F like protein M2904_06430 PF01381 Helix-turn-helix M2904_06445 PF00436 Single-strand binding protein family M2904_06505 PF01695 IstB-like ATP binding protein M2904_06545 PF01726 LexA DNA binding domain M2904_06545 PF00717 Peptidase S24-like M2904_06560 PF02796 Helix-turn-helix domain of resolvase M2904_06560 PF00239 Resolvase, N terminal domain M2904_06575 PF07963 Prokaryotic N-terminal methylation motif M2904_06580 PF00482 Type II secretion system (T2SS), protein F M2904_06585 PF00437 Type II/IV secretion system protein M2904_06590 PF01709 Transcriptional regulator M2904_06595 PF03601 Conserved hypothetical protein 698 M2904_06600 PF05991 YacP-like NYN domain M2904_06605 PF00588 SpoU rRNA Methylase family M2904_06605 PF08032 RNA 2'-O ribose methyltransferase substrate binding M2904_06610 PF00636 Ribonuclease III domain M2904_06615 PF01406 tRNA synthetases class I (C) catalytic domain M2904_06615 PF09190 DALR domain M2904_06620 PF00132 Bacterial transferase hexapeptide (six repeats) M2904_06620 PF06426 Serine acetyltransferase, N-terminal M2904_06625 PF00749 tRNA synthetases class I (E and Q), catalytic domain M2904_06635 PF18073 Rubredoxin metal binding domain M2904_06640 PF00692 dUTPase M2904_06645 PF02583 Metal-sensitive transcriptional repressor M2904_06650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_06650 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_06655 PF00581 Rhodanese-like domain M2904_06660 PF01479 S4 domain M2904_06660 PF00849 RNA pseudouridylate synthase M2904_06665 PF01943 Polysaccharide biosynthesis protein M2904_06665 PF14667 Polysaccharide biosynthesis C-terminal domain M2904_06670 PF05343 M42 glutamyl aminopeptidase M2904_06680 PF06335 Protein of unknown function (DUF1054) M2904_06685 PF13302 Acetyltransferase (GNAT) domain M2904_06690 PF01817 Chorismate mutase type II M2904_06690 PF00793 DAHP synthetase I family M2904_06695 PF02146 Sir2 family M2904_06705 PF01546 Peptidase family M20/M25/M40 M2904_06710 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M2904_06710 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_06715 PF01336 OB-fold nucleic acid binding domain M2904_06715 PF00152 tRNA synthetases class II (D, K and N) M2904_06715 PF02938 GAD domain M2904_06720 PF13393 Histidyl-tRNA synthetase M2904_06720 PF03129 Anticodon binding domain M2904_06725 PF01520 N-acetylmuramoyl-L-alanine amidase M2904_06725 PF08239 Bacterial SH3 domain M2904_06730 PF02580 D-Tyr-tRNA(Tyr) deacylase M2904_06735 PF13291 ACT domain M2904_06735 PF02824 TGS domain M2904_06735 PF04607 Region found in RelA / SpoT proteins M2904_06750 PF00005 ABC transporter M2904_06760 PF04452 RNA methyltransferase M2904_06775 PF16193 AAA C-terminal domain M2904_06775 PF12002 MgsA AAA+ ATPase C terminal M2904_06775 PF05496 Holliday junction DNA helicase RuvB P-loop domain M2904_06790 PF00582 Universal stress protein family M2904_06795 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_06795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_06800 PF00149 Calcineurin-like phosphoesterase M2904_06800 PF02872 5'-nucleotidase, C-terminal domain M2904_06805 PF00528 Binding-protein-dependent transport system inner membrane component M2904_06810 PF00528 Binding-protein-dependent transport system inner membrane component M2904_06815 PF00005 ABC transporter M2904_06825 PF03051 Peptidase C1-like family M2904_06840 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_06840 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M2904_06850 PF02535 ZIP Zinc transporter M2904_06855 PF09515 Thiamine transporter protein (Thia_YuaJ) M2904_06860 PF00893 Small Multidrug Resistance protein M2904_06865 PF00893 Small Multidrug Resistance protein M2904_06875 PF00480 ROK family M2904_06880 PF01238 Phosphomannose isomerase type I M2904_06895 PF00528 Binding-protein-dependent transport system inner membrane component M2904_06900 PF00528 Binding-protein-dependent transport system inner membrane component M2904_06930 PF00232 Glycosyl hydrolase family 1 M2904_06935 PF00583 Acetyltransferase (GNAT) family M2904_06950 PF00963 Cohesin domain M2904_06950 PF00754 F5/8 type C domain M2904_06950 PF00041 Fibronectin type III domain M2904_06950 PF02838 Glycosyl hydrolase family 20, domain 2 M2904_06950 PF07555 beta-N-acetylglucosaminidase M2904_06955 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M2904_06955 PF00703 Glycosyl hydrolases family 2 M2904_06955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M2904_06955 PF02837 Glycosyl hydrolases family 2, sugar binding domain M2904_06960 PF01268 Formate--tetrahydrofolate ligase M2904_06965 PF04892 VanZ like family M2904_06970 PF01207 Dihydrouridine synthase (Dus) M2904_06975 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family M2904_07000 PF01381 Helix-turn-helix M2904_07000 PF00145 C-5 cytosine-specific DNA methylase M2904_07010 PF01022 Bacterial regulatory protein, arsR family M2904_07025 PF00403 Heavy-metal-associated domain M2904_07035 PF00271 Helicase conserved C-terminal domain M2904_07035 PF00270 DEAD/DEAH box helicase M2904_07035 PF08494 DEAD/H associated M2904_07050 PF00380 Ribosomal protein S9/S16 M2904_07055 PF00572 Ribosomal protein L13 M2904_07060 PF01416 tRNA pseudouridine synthase M2904_07065 PF02361 Cobalt transport protein M2904_07070 PF00005 ABC transporter M2904_07075 PF00005 ABC transporter M2904_07080 PF01196 Ribosomal protein L17 M2904_07085 PF01000 RNA polymerase Rpb3/RpoA insert domain M2904_07085 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M2904_07085 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M2904_07090 PF00411 Ribosomal protein S11 M2904_07095 PF00416 Ribosomal protein S13/S18 M2904_07100 PF00444 Ribosomal protein L36 M2904_07105 PF01176 Translation initiation factor 1A / IF-1 M2904_07110 PF05191 Adenylate kinase, active site lid M2904_07115 PF00344 SecY translocase M2904_07120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M2904_07125 PF00327 Ribosomal protein L30p/L7e M2904_07130 PF00333 Ribosomal protein S5, N-terminal domain M2904_07130 PF03719 Ribosomal protein S5, C-terminal domain M2904_07135 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M2904_07140 PF00347 Ribosomal protein L6 M2904_07145 PF00410 Ribosomal protein S8 M2904_07150 PF00253 Ribosomal protein S14p/S29e M2904_07155 PF00281 Ribosomal protein L5 M2904_07155 PF00673 ribosomal L5P family C-terminus M2904_07160 PF00467 KOW motif M2904_07160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M2904_07165 PF00238 Ribosomal protein L14p/L23e M2904_07170 PF00366 Ribosomal protein S17 M2904_07175 PF00831 Ribosomal L29 protein M2904_07180 PF00252 Ribosomal protein L16p/L10e M2904_07185 PF07650 KH domain M2904_07185 PF00189 Ribosomal protein S3, C-terminal domain M2904_07190 PF00237 Ribosomal protein L22p/L17e M2904_07195 PF00203 Ribosomal protein S19 M2904_07200 PF00181 Ribosomal Proteins L2, RNA binding domain M2904_07200 PF03947 Ribosomal Proteins L2, C-terminal domain M2904_07205 PF00276 Ribosomal protein L23 M2904_07210 PF00573 Ribosomal protein L4/L1 family M2904_07215 PF00297 Ribosomal protein L3 M2904_07220 PF00338 Ribosomal protein S10p/S20e M2904_07230 PF00009 Elongation factor Tu GTP binding domain M2904_07230 PF03144 Elongation factor Tu domain 2 M2904_07230 PF03143 Elongation factor Tu C-terminal domain M2904_07235 PF00679 Elongation factor G C-terminus M2904_07235 PF14492 Elongation Factor G, domain II M2904_07235 PF03764 Elongation factor G, domain IV M2904_07235 PF00009 Elongation factor Tu GTP binding domain M2904_07235 PF03144 Elongation factor Tu domain 2 M2904_07240 PF00177 Ribosomal protein S7p/S5e M2904_07245 PF00164 Ribosomal protein S12/S23 M2904_07250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M2904_07255 PF01048 Phosphorylase superfamily M2904_07260 PF01048 Phosphorylase superfamily M2904_07265 PF01676 Metalloenzyme superfamily M2904_07270 PF02653 Branched-chain amino acid transport system / permease component M2904_07275 PF02653 Branched-chain amino acid transport system / permease component M2904_07280 PF00005 ABC transporter M2904_07285 PF02608 ABC transporter substrate-binding protein PnrA-like M2904_07290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M2904_07295 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M2904_07295 PF00591 Glycosyl transferase family, a/b domain M2904_07295 PF02885 Glycosyl transferase family, helical bundle domain M2904_07300 PF00356 Bacterial regulatory proteins, lacI family M2904_07310 PF02653 Branched-chain amino acid transport system / permease component M2904_07315 PF00005 ABC transporter M2904_07320 PF08279 HTH domain M2904_07320 PF03099 Biotin/lipoate A/B protein ligase family M2904_07320 PF02237 Biotin protein ligase C terminal domain M2904_07330 PF02424 ApbE family M2904_07335 PF04205 FMN-binding domain M2904_07340 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_07350 PF00348 Polyprenyl synthetase M2904_07355 PF00005 ABC transporter M2904_07355 PF12848 ABC transporter M2904_07365 PF00772 DnaB-like helicase N terminal domain M2904_07365 PF03796 DnaB-like helicase C terminal domain M2904_07370 PF03948 Ribosomal protein L9, C-terminal domain M2904_07370 PF01281 Ribosomal protein L9, N-terminal domain M2904_07375 PF01084 Ribosomal protein S18 M2904_07380 PF00436 Single-strand binding protein family M2904_07385 PF01250 Ribosomal protein S6 M2904_07395 PF03989 DNA gyrase C-terminal domain, beta-propeller M2904_07395 PF00521 DNA gyrase/topoisomerase IV, subunit A M2904_07400 PF00204 DNA gyrase B M2904_07400 PF00986 DNA gyrase B subunit, carboxyl terminus M2904_07400 PF01751 Toprim domain M2904_07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_07405 PF02463 RecF/RecN/SMC N terminal domain M2904_07430 PF04962 KduI/IolB family M2904_07435 PF09339 IclR helix-turn-helix domain M2904_07435 PF01614 Bacterial transcriptional regulator M2904_07440 PF01081 KDPG and KHG aldolase M2904_07445 PF00294 pfkB family carbohydrate kinase M2904_07450 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M2904_07450 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain M2904_07450 PF02278 Polysaccharide lyase family 8, super-sandwich domain M2904_07465 PF03613 PTS system mannose/fructose/sorbose family IID component M2904_07470 PF03609 PTS system sorbose-specific iic component M2904_07480 PF07470 Glycosyl Hydrolase Family 88 M2904_07485 PF00392 Bacterial regulatory proteins, gntR family M2904_07485 PF07702 UTRA domain M2904_07490 PF00712 DNA polymerase III beta subunit, N-terminal domain M2904_07490 PF02767 DNA polymerase III beta subunit, central domain M2904_07490 PF02768 DNA polymerase III beta subunit, C-terminal domain M2904_07495 PF00308 Bacterial dnaA protein M2904_07495 PF08299 Bacterial dnaA protein helix-turn-helix M2904_07500 PF00468 Ribosomal protein L34 M2904_07505 PF00825 Ribonuclease P M2904_07510 PF02096 60Kd inner membrane protein M2904_07520 PF12631 MnmE helical domain M2904_07520 PF10396 GTP-binding protein TrmE N-terminus M2904_07520 PF01926 50S ribosome-binding GTPase M2904_07525 PF13932 GidA associated domain M2904_07525 PF01134 Glucose inhibited division protein A M2904_07535 PF02527 rRNA small subunit methyltransferase G M2904_07540 PF13614 AAA domain M2904_07545 PF02195 ParB-like nuclease domain M2904_07545 PF17762 HTH domain found in ParB protein M2904_07550 PF06107 Bacterial protein of unknown function (DUF951) M2904_07555 PF06071 Protein of unknown function (DUF933) M2904_07555 PF01926 50S ribosome-binding GTPase M2904_07565 PF00478 IMP dehydrogenase / GMP reductase domain M2904_07565 PF00571 CBS domain M2904_07570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2904_07570 PF02403 Seryl-tRNA synthetase N-terminal domain M2904_07575 PF00768 D-alanyl-D-alanine carboxypeptidase M2904_07575 PF07943 Penicillin-binding protein 5, C-terminal domain M2904_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_07580 PF00512 His Kinase A (phospho-acceptor) domain M2904_07585 PF00072 Response regulator receiver domain M2904_07585 PF00486 Transcriptional regulatory protein, C terminal M2904_07655 PF05848 CtsR N-terminal HTH domain M2904_07655 PF17727 CtsR C-terminal dimerization domain M2904_07660 PF00004 ATPase family associated with various cellular activities (AAA) M2904_07660 PF07724 AAA domain (Cdc48 subfamily) M2904_07660 PF17871 AAA lid domain M2904_07660 PF02861 Clp amino terminal domain, pathogenicity island component M2904_07660 PF10431 C-terminal, D2-small domain, of ClpB protein M2904_07670 PF01136 Peptidase family U32 M2904_07670 PF16325 Peptidase family U32 C-terminal domain M2904_07675 PF04203 Sortase domain M2904_07685 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_07685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_07690 PF01654 Cytochrome bd terminal oxidase subunit I M2904_07695 PF02322 Cytochrome bd terminal oxidase subunit II M2904_07700 PF00005 ABC transporter M2904_07700 PF00664 ABC transporter transmembrane region M2904_07705 PF00664 ABC transporter transmembrane region M2904_07705 PF00005 ABC transporter M2904_07715 PF00348 Polyprenyl synthetase M2904_07735 PF01515 Phosphate acetyl/butaryl transferase M2904_07740 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M2904_07745 PF00149 Calcineurin-like phosphoesterase M2904_07745 PF02872 5'-nucleotidase, C-terminal domain M2904_07745 PF17936 Bacterial Ig domain M2904_07755 PF11490 DNA polymerase III polC-type N-terminus II M2904_07755 PF07733 Bacterial DNA polymerase III alpha NTPase domain M2904_07755 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M2904_07755 PF14579 Helix-hairpin-helix motif M2904_07755 PF02811 PHP domain M2904_07755 PF01336 OB-fold nucleic acid binding domain M2904_07755 PF14480 DNA polymerase III polC-type N-terminus I M2904_07755 PF00929 Exonuclease M2904_07760 PF03372 Endonuclease/Exonuclease/phosphatase family M2904_07765 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M2904_07765 PF01565 FAD binding domain M2904_07770 PF08240 Alcohol dehydrogenase GroES-like domain M2904_07770 PF00107 Zinc-binding dehydrogenase M2904_07780 PF00005 ABC transporter M2904_07780 PF08402 TOBE domain M2904_07785 PF00528 Binding-protein-dependent transport system inner membrane component M2904_07790 PF00528 Binding-protein-dependent transport system inner membrane component M2904_07795 PF13416 Bacterial extracellular solute-binding protein M2904_07800 PF08544 GHMP kinases C terminal M2904_07800 PF00288 GHMP kinases N terminal domain M2904_07805 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M2904_07805 PF00367 phosphotransferase system, EIIB M2904_07805 PF02378 Phosphotransferase system, EIIC M2904_07810 PF01297 Zinc-uptake complex component A periplasmic M2904_07815 PF00950 ABC 3 transport family M2904_07820 PF00005 ABC transporter M2904_07825 PF00005 ABC transporter M2904_07830 PF00950 ABC 3 transport family M2904_07835 PF00156 Phosphoribosyl transferase domain M2904_07835 PF09182 Bacterial purine repressor, N-terminal M2904_07840 PF00132 Bacterial transferase hexapeptide (six repeats) M2904_07840 PF00483 Nucleotidyl transferase M2904_07845 PF14572 Phosphoribosyl synthetase-associated domain M2904_07845 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M2904_07850 PF01741 Large-conductance mechanosensitive channel, MscL M2904_07855 PF05193 Peptidase M16 inactive domain M2904_07860 PF00675 Insulinase (Peptidase family M16) M2904_07860 PF05193 Peptidase M16 inactive domain M2904_07870 PF13464 Domain of unknown function (DUF4115) M2904_07875 PF01066 CDP-alcohol phosphatidyltransferase M2904_07880 PF00994 Probable molybdopterin binding domain M2904_07880 PF02464 Competence-damaged protein M2904_07880 PF18146 Damage-inducible protein CinA KH domain M2904_07885 PF00154 recA bacterial DNA recombination protein M2904_07890 PF01966 HD domain M2904_07890 PF00013 KH domain M2904_07890 PF12072 Domain of unknown function (DUF3552) M2904_07905 PF00313 'Cold-shock' DNA-binding domain M2904_07920 PF13580 SIS domain M2904_07925 PF00367 phosphotransferase system, EIIB M2904_07925 PF02378 Phosphotransferase system, EIIC M2904_07930 PF13419 Haloacid dehalogenase-like hydrolase M2904_07935 PF01380 SIS domain M2904_07935 PF01418 Helix-turn-helix domain, rpiR family M2904_07940 PF13538 UvrD-like helicase C-terminal domain M2904_07945 PF00072 Response regulator receiver domain M2904_07945 PF00486 Transcriptional regulatory protein, C terminal M2904_07950 PF00672 HAMP domain M2904_07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_07950 PF00512 His Kinase A (phospho-acceptor) domain M2904_07950 PF13426 PAS domain M2904_07965 PF00753 Metallo-beta-lactamase superfamily M2904_07970 PF13180 PDZ domain M2904_07975 PF02590 Predicted SPOUT methyltransferase M2904_08005 PF00145 C-5 cytosine-specific DNA methylase M2904_08010 PF02798 Glutathione S-transferase, N-terminal domain M2904_08015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M2904_08025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M2904_08025 PF00367 phosphotransferase system, EIIB M2904_08025 PF02378 Phosphotransferase system, EIIC M2904_08030 PF00874 PRD domain M2904_08030 PF03123 CAT RNA binding domain M2904_08035 PF00232 Glycosyl hydrolase family 1 M2904_08045 PF02308 MgtC family M2904_08050 PF07690 Major Facilitator Superfamily M2904_08055 PF03610 PTS system fructose IIA component M2904_08055 PF00874 PRD domain M2904_08055 PF00158 Sigma-54 interaction domain M2904_08060 PF03830 PTS system sorbose subfamily IIB component M2904_08060 PF03610 PTS system fructose IIA component M2904_08065 PF03830 PTS system sorbose subfamily IIB component M2904_08065 PF03610 PTS system fructose IIA component M2904_08070 PF03609 PTS system sorbose-specific iic component M2904_08075 PF03613 PTS system mannose/fructose/sorbose family IID component M2904_08110 PF07155 ECF-type riboflavin transporter, S component M2904_08115 PF00005 ABC transporter M2904_08115 PF12558 ATP-binding cassette cobalt transporter M2904_08130 PF00860 Permease family M2904_08135 PF01979 Amidohydrolase family M2904_08140 PF04138 GtrA-like protein M2904_08145 PF00535 Glycosyl transferase family 2 M2904_08160 PF00005 ABC transporter M2904_08165 PF03649 Uncharacterised protein family (UPF0014) M2904_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M2904_08175 PF03466 LysR substrate binding domain M2904_08180 PF00106 short chain dehydrogenase M2904_08185 PF05043 Mga helix-turn-helix domain M2904_08185 PF00874 PRD domain M2904_08185 PF08279 HTH domain M2904_08185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_08195 PF03608 PTS system enzyme II sorbitol-specific factor M2904_08200 PF03612 Sorbitol phosphotransferase enzyme II N-terminus M2904_08200 PF07663 Sorbitol phosphotransferase enzyme II C-terminus M2904_08210 PF00923 Transaldolase/Fructose-6-phosphate aldolase M2904_08230 PF13460 NAD(P)H-binding M2904_08235 PF01638 HxlR-like helix-turn-helix M2904_08240 PF00156 Phosphoribosyl transferase domain M2904_08245 PF00860 Permease family M2904_08250 PF02378 Phosphotransferase system, EIIC M2904_08250 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M2904_08250 PF00367 phosphotransferase system, EIIB M2904_08255 PF01613 Flavin reductase like domain M2904_08260 PF00356 Bacterial regulatory proteins, lacI family M2904_08260 PF13407 Periplasmic binding protein domain M2904_08265 PF02378 Phosphotransferase system, EIIC M2904_08265 PF00367 phosphotransferase system, EIIB M2904_08270 PF00251 Glycosyl hydrolases family 32 N-terminal domain M2904_08270 PF08244 Glycosyl hydrolases family 32 C terminal M2904_08275 PF03611 PTS system sugar-specific permease component M2904_08280 PF00884 Sulfatase M2904_08280 PF16385 Domain of unknown function M2904_08285 PF13186 Iron-sulfur cluster-binding domain M2904_08285 PF04055 Radical SAM superfamily M2904_08290 PF00924 Mechanosensitive ion channel M2904_08330 PF00155 Aminotransferase class I and II M2904_08335 PF01370 NAD dependent epimerase/dehydratase family M2904_08345 PF00465 Iron-containing alcohol dehydrogenase M2904_08350 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain M2904_08350 PF09261 Alpha mannosidase middle domain M2904_08350 PF01074 Glycosyl hydrolases family 38 N-terminal domain M2904_08350 PF07748 Glycosyl hydrolases family 38 C-terminal domain M2904_08350 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 M2904_08360 PF00392 Bacterial regulatory proteins, gntR family M2904_08380 PF00581 Rhodanese-like domain M2904_08380 PF12368 Rhodanase C-terminal M2904_08380 PF17773 UPF0176 acylphosphatase like domain M2904_08385 PF02805 Metal binding domain of Ada M2904_08385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M2904_08385 PF12833 Helix-turn-helix domain M2904_08385 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M2904_08390 PF02245 Methylpurine-DNA glycosylase (MPG) M2904_08400 PF11495 Archaeal transcriptional regulator TrmB M2904_08400 PF01978 Sugar-specific transcriptional regulator TrmB M2904_08410 PF02423 Ornithine cyclodeaminase/mu-crystallin family M2904_08415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_08415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M2904_08420 PF00294 pfkB family carbohydrate kinase M2904_08425 PF08220 DeoR-like helix-turn-helix domain M2904_08425 PF00455 DeoR C terminal sensor domain M2904_08430 PF13277 YmdB-like protein M2904_08440 PF01624 MutS domain I M2904_08440 PF05188 MutS domain II M2904_08440 PF00488 MutS domain V M2904_08440 PF05190 MutS family domain IV M2904_08440 PF05192 MutS domain III M2904_08445 PF08676 MutL C terminal dimerisation domain M2904_08445 PF01119 DNA mismatch repair protein, C-terminal domain M2904_08450 PF02545 Maf-like protein M2904_08455 PF01641 SelR domain M2904_08460 PF01380 SIS domain M2904_08460 PF01418 Helix-turn-helix domain, rpiR family M2904_08465 PF08903 Domain of unknown function (DUF1846) M2904_08470 PF01966 HD domain M2904_08480 PF03788 LrgA family M2904_08485 PF04172 LrgB-like family M2904_08490 PF08279 HTH domain M2904_08490 PF00571 CBS domain M2904_08495 PF03618 Kinase/pyrophosphorylase M2904_08500 PF00781 Diacylglycerol kinase catalytic domain M2904_08520 PF00486 Transcriptional regulatory protein, C terminal M2904_08520 PF00072 Response regulator receiver domain M2904_08525 PF00512 His Kinase A (phospho-acceptor) domain M2904_08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M2904_08525 PF00672 HAMP domain M2904_08530 PF05256 Uncharacterised protein family (UPF0223) M2904_08535 PF00459 Inositol monophosphatase family M2904_08540 PF03144 Elongation factor Tu domain 2 M2904_08540 PF00009 Elongation factor Tu GTP binding domain M2904_08540 PF14492 Elongation Factor G, domain II M2904_08540 PF00679 Elongation factor G C-terminus M2904_08550 PF02558 Ketopantoate reductase PanE/ApbA M2904_08550 PF08546 Ketopantoate reductase PanE/ApbA C terminal M2904_08560 PF00171 Aldehyde dehydrogenase family M2904_08565 PF01116 Fructose-bisphosphate aldolase class-II M2904_08580 PF10282 Lactonase, 7-bladed beta-propeller M2904_08590 PF01594 AI-2E family transporter M2904_08600 PF02525 Flavodoxin-like fold M2904_08610 PF00990 Diguanylate cyclase, GGDEF domain M2904_08610 PF07694 5TMR of 5TMR-LYT M2904_08620 PF08274 PhnA Zinc-Ribbon M2904_08620 PF03831 PhnA domain M2904_08625 PF04298 Putative neutral zinc metallopeptidase M2904_08635 PF13556 PucR C-terminal helix-turn-helix domain M2904_08640 PF14437 MafB19-like deaminase M2904_08665 PF12169 DNA polymerase III subunits gamma and tau domain III M2904_08670 PF02575 YbaB/EbfC DNA-binding family M2904_08675 PF13662 Toprim domain M2904_08675 PF02132 RecR protein M2904_08680 PF02223 Thymidylate kinase M2904_08685 PF06153 Cyclic-di-AMP receptor M2904_08690 PF09115 DNA polymerase III, delta subunit, C terminal M2904_08695 PF04468 PSP1 C-terminal conserved region M2904_08700 PF06156 Initiation control protein YabA M2904_08705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M2904_08745 PF00005 ABC transporter M2904_08745 PF00664 ABC transporter transmembrane region M2904_08750 PF00005 ABC transporter M2904_08750 PF00664 ABC transporter transmembrane region M2904_08755 PF04260 Protein of unknown function (DUF436) M2904_08760 PF14693 Ribosomal protein TL5, C-terminal domain M2904_08760 PF01386 Ribosomal L25p family M2904_08765 PF00005 ABC transporter M2904_08770 PF00528 Binding-protein-dependent transport system inner membrane component M2904_08780 PF13514 AAA domain M2904_08790 PF00163 Ribosomal protein S4/S9 N-terminal domain M2904_08790 PF01479 S4 domain M2904_08795 PF17910 FeoB cytosolic helical domain M2904_08795 PF02421 Ferrous iron transport protein B M2904_08795 PF07664 Ferrous iron transport protein B C terminus M2904_08795 PF07670 Nucleoside recognition M2904_08805 PF10531 SLBB domain M2904_08810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M2904_08815 PF03772 Competence protein M2904_08815 PF00753 Metallo-beta-lactamase superfamily M2904_08815 PF13567 Domain of unknown function (DUF4131) M2904_08820 PF06144 DNA polymerase III, delta subunit M2904_08830 PF01649 Ribosomal protein S20 M2904_08835 PF01384 Phosphate transporter family M2904_08840 PF01865 Protein of unknown function DUF47 M2904_08850 PF02673 Bacitracin resistance protein BacA M2904_08855 PF12833 Helix-turn-helix domain M2904_08860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_08860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M2904_08870 PF01261 Xylose isomerase-like TIM barrel M2904_08875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_08875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M2904_08880 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M2904_08880 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M2904_08885 PF02742 Iron dependent repressor, metal binding and dimerisation domain M2904_08885 PF01325 Iron dependent repressor, N-terminal DNA binding domain M2904_08885 PF18357 Diphteria toxin repressor SH3 domain M2904_08900 PF00571 CBS domain M2904_08900 PF00005 ABC transporter M2904_08905 PF00528 Binding-protein-dependent transport system inner membrane component M2904_08910 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M2904_08915 PF00528 Binding-protein-dependent transport system inner membrane component M2904_08920 PF00155 Aminotransferase class I and II M2904_08925 PF01066 CDP-alcohol phosphatidyltransferase M2904_08935 PF01979 Amidohydrolase family M2904_08940 PF12464 Maltose acetyltransferase M2904_08940 PF14602 Hexapeptide repeat of succinyl-transferase M2904_08955 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M2904_08955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M2904_08960 PF01380 SIS domain M2904_08960 PF01418 Helix-turn-helix domain, rpiR family M2904_08965 PF00391 PEP-utilising enzyme, mobile domain M2904_08965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M2904_08965 PF02896 PEP-utilising enzyme, TIM barrel domain M2904_08970 PF03009 Glycerophosphoryl diester phosphodiesterase family M2904_08975 PF08264 Anticodon-binding domain of tRNA M2904_08975 PF09334 tRNA synthetases class I (M) M2904_08975 PF01588 Putative tRNA binding domain M2904_08980 PF01026 TatD related DNase M2904_08985 PF13331 Domain of unknown function (DUF4093) M2904_08985 PF01751 Toprim domain M2904_08990 PF00398 Ribosomal RNA adenine dimethylase M2904_08995 PF00005 ABC transporter M2904_08995 PF17912 MalK OB fold domain M2904_08995 PF03459 TOBE domain M2904_09000 PF02142 MGS-like domain M2904_09005 PF12822 ECF transporter, substrate-specific component M2904_09010 PF02384 N-6 DNA Methylase M2904_09015 PF00871 Acetokinase family M2904_09020 PF01032 FecCD transport family M2904_09025 PF01032 FecCD transport family M2904_09030 PF00005 ABC transporter M2904_09035 PF01497 Periplasmic binding protein M2904_09050 PF14552 Tautomerase enzyme M2904_09055 PF00455 DeoR C terminal sensor domain M2904_09055 PF08220 DeoR-like helix-turn-helix domain M2904_09060 PF00171 Aldehyde dehydrogenase family M2904_09065 PF04962 KduI/IolB family M2904_09070 PF00294 pfkB family carbohydrate kinase M2904_09075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M2904_09075 PF00205 Thiamine pyrophosphate enzyme, central domain M2904_09075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M2904_09080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_09080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M2904_09085 PF01261 Xylose isomerase-like TIM barrel M2904_09090 PF00474 Sodium:solute symporter family M2904_09095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M2904_09095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M2904_09105 PF01330 RuvA N terminal domain M2904_09105 PF07499 RuvA, C-terminal domain M2904_09110 PF05496 Holliday junction DNA helicase RuvB P-loop domain M2904_09110 PF17864 RuvB AAA lid domain M2904_09110 PF05491 RuvB C-terminal winged helix domain M2904_09115 PF02547 Queuosine biosynthesis protein M2904_09120 PF01702 Queuine tRNA-ribosyltransferase M2904_09125 PF02699 Preprotein translocase subunit M2904_09135 PF00465 Iron-containing alcohol dehydrogenase M2904_09135 PF00171 Aldehyde dehydrogenase family M2904_09150 PF00877 NlpC/P60 family M2904_09155 PF13520 Amino acid permease M2904_09160 PF01432 Peptidase family M3 M2904_09160 PF08439 Oligopeptidase F M2904_09170 PF06257 Biofilm formation stimulator VEG M2904_09175 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M2904_09175 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M2904_09180 PF00392 Bacterial regulatory proteins, gntR family M2904_09180 PF07702 UTRA domain M2904_09185 PF01546 Peptidase family M20/M25/M40 M2904_09190 PF01112 Asparaginase M2904_09200 PF00480 ROK family M2904_09205 PF01938 TRAM domain M2904_09205 PF05958 tRNA (Uracil-5-)-methyltransferase M2904_09210 PF00156 Phosphoribosyl transferase domain M2904_09220 PF01061 ABC-2 type transporter M2904_09225 PF02082 Transcriptional regulator M2904_09230 PF07702 UTRA domain M2904_09230 PF00392 Bacterial regulatory proteins, gntR family M2904_09235 PF16657 Maltogenic Amylase, C-terminal domain M2904_09235 PF00128 Alpha amylase, catalytic domain M2904_09240 PF02378 Phosphotransferase system, EIIC M2904_09240 PF00367 phosphotransferase system, EIIB M2904_09250 PF00005 ABC transporter M2904_09265 PF13411 MerR HTH family regulatory protein M2904_09270 PF00300 Histidine phosphatase superfamily (branch 1) M2904_09275 PF07702 UTRA domain M2904_09275 PF00392 Bacterial regulatory proteins, gntR family M2904_09280 PF00232 Glycosyl hydrolase family 1 M2904_09285 PF01551 Peptidase family M23 M2904_09285 PF01464 Transglycosylase SLT domain M2904_09285 PF10145 Phage-related minor tail protein M2904_09290 PF01522 Polysaccharide deacetylase M2904_09290 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain M2904_09295 PF00253 Ribosomal protein S14p/S29e M2904_09310 PF00158 Sigma-54 interaction domain M2904_09310 PF02954 Bacterial regulatory protein, Fis family M2904_09310 PF01590 GAF domain M2904_09315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M2904_09315 PF07992 Pyridine nucleotide-disulphide oxidoreductase M2904_09320 PF00676 Dehydrogenase E1 component M2904_09325 PF02780 Transketolase, C-terminal domain M2904_09325 PF02779 Transketolase, pyrimidine binding domain M2904_09330 PF02817 e3 binding domain M2904_09330 PF00364 Biotin-requiring enzyme M2904_09330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M2904_09335 PF07969 Amidohydrolase family M2904_09340 PF13520 Amino acid permease M2904_09355 PF08220 DeoR-like helix-turn-helix domain M2904_09355 PF00455 DeoR C terminal sensor domain M2904_09365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M2904_09370 PF03611 PTS system sugar-specific permease component M2904_09380 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M2904_09385 PF01261 Xylose isomerase-like TIM barrel M2904_09390 PF00596 Class II Aldolase and Adducin N-terminal domain M2904_09400 PF02486 Replication initiation factor M2904_09415 PF00958 GMP synthase C terminal domain M2904_09415 PF02540 NAD synthase M2904_09415 PF00117 Glutamine amidotransferase class-I M2904_09420 PF00485 Phosphoribulokinase / Uridine kinase family M2904_09425 PF03061 Thioesterase superfamily M2904_09435 PF05175 Methyltransferase small domain M2904_09440 PF00318 Ribosomal protein S2 M2904_09445 PF00889 Elongation factor TS M2904_09450 PF00696 Amino acid kinase family M2904_09455 PF01765 Ribosome recycling factor M2904_09460 PF00654 Voltage gated chloride channel M2904_09465 PF01255 Putative undecaprenyl diphosphate synthase M2904_09475 PF17820 PDZ domain M2904_09475 PF02163 Peptidase family M50 M2904_09480 PF03129 Anticodon binding domain M2904_09480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M2904_09480 PF04073 Aminoacyl-tRNA editing domain M2904_09485 PF14579 Helix-hairpin-helix motif M2904_09485 PF00929 Exonuclease M2904_09485 PF02811 PHP domain M2904_09485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M2904_09485 PF07733 Bacterial DNA polymerase III alpha NTPase domain M2904_09485 PF11490 DNA polymerase III polC-type N-terminus II M2904_09485 PF14480 DNA polymerase III polC-type N-terminus I M2904_09490 PF01475 Ferric uptake regulator family M2904_09570 PF08459 UvrC Helix-hairpin-helix N-terminal M2904_09570 PF02151 UvrB/uvrC motif M2904_09570 PF01541 GIY-YIG catalytic domain M2904_09580 PF13732 Domain of unknown function (DUF4162) M2904_09580 PF00005 ABC transporter M2904_09590 PF13361 UvrD-like helicase C-terminal domain M2904_09590 PF00580 UvrD/REP helicase N-terminal domain M2904_09595 PF12826 Helix-hairpin-helix motif M2904_09595 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M2904_09595 PF03120 NAD-dependent DNA ligase OB-fold domain M2904_09595 PF01653 NAD-dependent DNA ligase adenylation domain M2904_09595 PF00533 BRCA1 C Terminus (BRCT) domain M2904_09600 PF02686 Glu-tRNAGln amidotransferase C subunit M2904_09605 PF01425 Amidase M2904_09610 PF02934 GatB/GatE catalytic domain M2904_09610 PF02637 GatB domain M2904_09615 PF00781 Diacylglycerol kinase catalytic domain M2904_09620 PF05958 tRNA (Uracil-5-)-methyltransferase M2904_09620 PF01938 TRAM domain M2904_09635 PF08241 Methyltransferase domain M2904_09640 PF04439 Streptomycin adenylyltransferase M2904_09645 PF00156 Phosphoribosyl transferase domain M2904_09650 PF01909 Nucleotidyltransferase domain M2904_09650 PF13427 Domain of unknown function (DUF4111) M2904_09665 PF00027 Cyclic nucleotide-binding domain M2904_09665 PF13545 Crp-like helix-turn-helix domain M2904_09670 PF04405 Domain of Unknown function (DUF542) M2904_09670 PF01814 Hemerythrin HHE cation binding domain M2904_09675 PF00403 Heavy-metal-associated domain M2904_09680 PF00403 Heavy-metal-associated domain M2904_09685 PF05525 Branched-chain amino acid transport protein M2904_09695 PF00005 ABC transporter M2904_09695 PF00664 ABC transporter transmembrane region M2904_09700 PF00005 ABC transporter M2904_09700 PF00664 ABC transporter transmembrane region M2904_09710 PF07943 Penicillin-binding protein 5, C-terminal domain M2904_09710 PF00768 D-alanyl-D-alanine carboxypeptidase M2904_09715 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M2904_09720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M2904_09720 PF07498 Rho termination factor, N-terminal domain M2904_09720 PF07497 Rho termination factor, RNA-binding domain M2904_09725 PF01197 Ribosomal protein L31 M2904_09730 PF01476 LysM domain M2904_09730 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M2904_09735 PF01263 Aldose 1-epimerase M2904_09740 PF06874 Firmicute fructose-1,6-bisphosphatase M2904_09745 PF13649 Methyltransferase domain M2904_09750 PF00582 Universal stress protein family M2904_09770 PF00829 Ribosomal prokaryotic L21 protein M2904_09780 PF01016 Ribosomal L27 protein M2904_09785 PF01321 Creatinase/Prolidase N-terminal domain M2904_09785 PF00557 Metallopeptidase family M24 M2904_09790 PF01132 Elongation factor P (EF-P) OB domain M2904_09790 PF08207 Elongation factor P (EF-P) KOW-like domain M2904_09790 PF09285 Elongation factor P, C-terminal M2904_09795 PF03780 Asp23 family, cell envelope-related function M2904_09800 PF01029 NusB family M2904_09805 PF13742 OB-fold nucleic acid binding domain M2904_09805 PF02601 Exonuclease VII, large subunit M2904_09810 PF02609 Exonuclease VII small subunit M2904_09815 PF00348 Polyprenyl synthetase M2904_09820 PF01728 FtsJ-like methyltransferase M2904_09820 PF01479 S4 domain M2904_09825 PF01316 Arginine repressor, DNA binding domain M2904_09825 PF02863 Arginine repressor, C-terminal domain M2904_09830 PF02463 RecF/RecN/SMC N terminal domain M2904_09845 PF02381 MraZ protein, putative antitoxin-like M2904_09850 PF01795 MraW methylase family M2904_09860 PF03793 PASTA domain M2904_09860 PF00905 Penicillin binding protein transpeptidase domain M2904_09860 PF03717 Penicillin-binding Protein dimerisation domain M2904_09865 PF00953 Glycosyl transferase family 4 M2904_09865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M2904_09870 PF08245 Mur ligase middle domain M2904_09870 PF02875 Mur ligase family, glutamate ligase domain M2904_09875 PF04101 Glycosyltransferase family 28 C-terminal domain M2904_09875 PF03033 Glycosyltransferase family 28 N-terminal domain M2904_09880 PF03799 Cell division protein FtsQ M2904_09885 PF11983 Membrane-attachment and polymerisation-promoting switch M2904_09885 PF02491 SHS2 domain inserted in FTSA M2904_09890 PF12327 FtsZ family, C-terminal domain M2904_09890 PF00091 Tubulin/FtsZ family, GTPase domain M2904_09895 PF01168 Alanine racemase, N-terminal domain M2904_09900 PF04472 Cell division protein SepF M2904_09910 PF01479 S4 domain M2904_09910 PF17774 Putative RNA-binding domain in YlmH M2904_09915 PF05103 DivIVA protein M2904_09920 PF08264 Anticodon-binding domain of tRNA M2904_09920 PF00133 tRNA synthetases class I (I, L, M and V) M2904_09920 PF06827 Zinc finger found in FPG and IleRS M2904_09945 PF18019 HD domain M2904_09945 PF00270 DEAD/DEAH box helicase M2904_09945 PF18395 Cas3 C-terminal domain M2904_09955 PF00471 Ribosomal protein L33 M2904_09965 PF00467 KOW motif M2904_09965 PF02357 Transcription termination factor nusG M2904_09990 PF04002 RadC-like JAB domain M2904_10000 PF07690 Major Facilitator Superfamily M2904_10010 PF00005 ABC transporter M2904_10010 PF12848 ABC transporter M2904_10010 PF16326 ABC transporter C-terminal domain M2904_10015 PF13610 DDE domain M2904_10020 PF05223 NTF2-like N-terminal transpeptidase domain M2904_10020 PF03717 Penicillin-binding Protein dimerisation domain M2904_10020 PF00905 Penicillin binding protein transpeptidase domain M2904_10025 PF13610 DDE domain M2904_10030 PF02796 Helix-turn-helix domain of resolvase M2904_10030 PF00239 Resolvase, N terminal domain M2904_10035 PF01420 Type I restriction modification DNA specificity domain M2904_10045 PF13610 DDE domain M2904_10065 PF13610 DDE domain M2904_10070 PF01381 Helix-turn-helix M2904_10080 PF01076 Plasmid recombination enzyme