CKY39_00085	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_00085	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_00085	PWY-6470	peptidoglycan biosynthesis V (β-lactam resistance)
CKY39_00085	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_00115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_00115	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_00115	PWY-6470	peptidoglycan biosynthesis V (β-lactam resistance)
CKY39_00115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_00410	PWY-6174	mevalonate pathway II (archaea)
CKY39_00410	PWY-7391	isoprene biosynthesis II (engineered)
CKY39_00410	PWY-7524	mevalonate pathway III (archaea)
CKY39_00410	PWY-922	mevalonate pathway I
CKY39_00430	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_00430	PWY-5109	2-methylbutanoate biosynthesis
CKY39_00430	PWY-5136	fatty acid β-oxidation II (peroxisome)
CKY39_00430	PWY-5138	unsaturated, even numbered fatty acid β-oxidation
CKY39_00430	PWY-5177	glutaryl-CoA degradation
CKY39_00430	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_00430	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_00430	PWY-6583	pyruvate fermentation to butanol I
CKY39_00430	PWY-6863	pyruvate fermentation to hexanol
CKY39_00430	PWY-6883	pyruvate fermentation to butanol II
CKY39_00430	PWY-6944	androstenedione degradation
CKY39_00430	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_00430	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_00430	PWY-7007	methyl ketone biosynthesis
CKY39_00430	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_00430	PWY-7094	fatty acid salvage
CKY39_00430	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_00430	PWY-735	jasmonic acid biosynthesis
CKY39_00430	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_00430	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_00430	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_00430	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_00430	PWY-7726	CKY39_00430
CKY39_00430	PWY-7778	CKY39_00430
CKY39_00430	PWY-7779	CKY39_00430
CKY39_00535	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_00540	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_00545	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_00550	PWY-101	photosynthesis light reactions
CKY39_00550	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_00585	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_00585	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_00585	PWY-7717	CKY39_00585
CKY39_00585	PWY-7733	CKY39_00585
CKY39_00585	PWY-7734	CKY39_00585
CKY39_00585	PWY-7765	CKY39_00585
CKY39_00615	PWY-5108	L-isoleucine biosynthesis V
CKY39_00615	PWY-5132	humulone biosynthesis
CKY39_00615	PWY-5133	cohumulone biosynthesis
CKY39_00615	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CKY39_00615	PWY-7118	chitin degradation to ethanol
CKY39_00615	PWY-7857	CKY39_00615
CKY39_00635	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_00890	PWY-381	nitrate reduction II (assimilatory)
CKY39_00890	PWY-5675	nitrate reduction V (assimilatory)
CKY39_00890	PWY-6549	L-glutamine biosynthesis III
CKY39_00890	PWY-6963	ammonia assimilation cycle I
CKY39_00890	PWY-6964	ammonia assimilation cycle II
CKY39_00945	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_00970	PWY-4261	glycerol degradation I
CKY39_01015	PWY-5028	L-histidine degradation II
CKY39_01015	PWY-5030	L-histidine degradation III
CKY39_01020	PWY-5028	L-histidine degradation II
CKY39_01020	PWY-5030	L-histidine degradation III
CKY39_01050	PWY-5028	L-histidine degradation II
CKY39_01050	PWY-5030	L-histidine degradation III
CKY39_01100	PWY-2201	folate transformations I
CKY39_01100	PWY-3841	folate transformations II
CKY39_01100	PWY-7977	CKY39_01100
CKY39_01390	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_01435	PWY-5101	L-isoleucine biosynthesis II
CKY39_01435	PWY-5103	L-isoleucine biosynthesis III
CKY39_01435	PWY-5104	L-isoleucine biosynthesis IV
CKY39_01435	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_01545	PWY-5057	L-valine degradation II
CKY39_01545	PWY-5076	L-leucine degradation III
CKY39_01545	PWY-5078	L-isoleucine degradation II
CKY39_01545	PWY-5101	L-isoleucine biosynthesis II
CKY39_01545	PWY-5103	L-isoleucine biosynthesis III
CKY39_01545	PWY-5104	L-isoleucine biosynthesis IV
CKY39_01545	PWY-5108	L-isoleucine biosynthesis V
CKY39_01545	PWY-7767	CKY39_01545
CKY39_01625	PWY-5686	UMP biosynthesis
CKY39_01625	PWY-7790	CKY39_01625
CKY39_01625	PWY-7791	CKY39_01625
CKY39_01640	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_01665	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_01665	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_01710	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_01745	PWY-5642	2,4-dinitrotoluene degradation
CKY39_01855	PWY-4381	fatty acid biosynthesis initiation I
CKY39_01855	PWY-5743	3-hydroxypropanoate cycle
CKY39_01855	PWY-5744	glyoxylate assimilation
CKY39_01855	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_01855	PWY-6722	candicidin biosynthesis
CKY39_01875	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_01920	PWY-4261	glycerol degradation I
CKY39_02120	PWY-4261	glycerol degradation I
CKY39_02125	PWY-4261	glycerol degradation I
CKY39_02125	PWY-6118	glycerol-3-phosphate shuttle
CKY39_02125	PWY-6952	glycerophosphodiester degradation
CKY39_02240	PWY-7887	CKY39_02240
CKY39_02240	PWY-7892	CKY39_02240
CKY39_02265	PWY-5155	&beta;-alanine biosynthesis III
CKY39_02310	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKY39_02310	PWY-6153	autoinducer AI-2 biosynthesis I
CKY39_02310	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CKY39_02355	PWY-2941	L-lysine biosynthesis II
CKY39_02355	PWY-2942	L-lysine biosynthesis III
CKY39_02355	PWY-5097	L-lysine biosynthesis VI
CKY39_02370	PWY-5941	glycogen degradation II (eukaryotic)
CKY39_02370	PWY-6731	starch degradation III
CKY39_02370	PWY-6737	starch degradation V
CKY39_02370	PWY-7238	sucrose biosynthesis II
CKY39_02375	PWY-622	starch biosynthesis
CKY39_02380	PWY-622	starch biosynthesis
CKY39_02380	PWY-7902	CKY39_02380
CKY39_02395	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CKY39_02395	PWY-622	starch biosynthesis
CKY39_02395	PWY-7900	CKY39_02395
CKY39_02425	PWY-3341	L-proline biosynthesis III
CKY39_02425	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CKY39_02500	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_02575	PWY-1042	glycolysis IV (plant cytosol)
CKY39_02575	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_02575	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_02575	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKY39_02620	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_02620	PWY-7118	chitin degradation to ethanol
CKY39_02620	PWY-7294	xylose degradation IV
CKY39_02620	PWY-7295	L-arabinose degradation IV
CKY39_02620	PWY-7854	CKY39_02620
CKY39_02800	PWY-5269	cardiolipin biosynthesis II
CKY39_02800	PWY-5668	cardiolipin biosynthesis I
CKY39_02800	PWY-7817	CKY39_02800
CKY39_02830	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CKY39_02830	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CKY39_02830	PWY-6896	thiamin salvage I
CKY39_02830	PWY-6897	thiamin salvage II
CKY39_02855	PWY-6840	homoglutathione biosynthesis
CKY39_02855	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKY39_02875	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_02875	PWY-5723	Rubisco shunt
CKY39_03125	PWY-181	photorespiration
CKY39_03130	PWY-2002	isoflavonoid biosynthesis I
CKY39_03130	PWY-5059	pinobanksin biosynthesis
CKY39_03130	PWY-6325	echinatin biosynthesis
CKY39_03130	PWY-6787	flavonoid biosynthesis (in equisetum)
CKY39_03130	PWY-7397	naringenin biosynthesis (engineered)
CKY39_03130	PWY-7897	CKY39_03130
CKY39_03135	PWY-5958	acridone alkaloid biosynthesis
CKY39_03135	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CKY39_03135	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CKY39_03490	PWY-6803	phosphatidylcholine acyl editing
CKY39_03490	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CKY39_03490	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CKY39_03490	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CKY39_03490	PWY-7783	CKY39_03490
CKY39_03530	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CKY39_03530	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CKY39_03530	PWY-7766	CKY39_03530
CKY39_03535	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CKY39_03535	PWY-7494	choline degradation IV
CKY39_03675	PWY-6167	flavin biosynthesis II (archaea)
CKY39_03755	PWY-3221	dTDP-L-rhamnose biosynthesis II
CKY39_03755	PWY-6808	dTDP-D-forosamine biosynthesis
CKY39_03755	PWY-6942	dTDP-D-desosamine biosynthesis
CKY39_03755	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CKY39_03755	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CKY39_03755	PWY-6974	dTDP-L-olivose biosynthesis
CKY39_03755	PWY-6976	dTDP-L-mycarose biosynthesis
CKY39_03755	PWY-7104	dTDP-L-megosamine biosynthesis
CKY39_03755	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CKY39_03755	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CKY39_03755	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CKY39_03755	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CKY39_03755	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CKY39_03755	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CKY39_03755	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CKY39_03755	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CKY39_03755	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CKY39_03755	PWY-7688	CKY39_03755
CKY39_03755	PWY-7814	CKY39_03755
CKY39_03780	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CKY39_03780	PWY-7688	CKY39_03780
CKY39_03865	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CKY39_03865	PWY-5940	streptomycin biosynthesis
CKY39_03870	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CKY39_03885	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_03885	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_03885	PWY-7560	methylerythritol phosphate pathway II
CKY39_03935	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_03935	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_03935	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_03940	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_03940	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_04025	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_04025	PWY-5109	2-methylbutanoate biosynthesis
CKY39_04025	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_04025	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_04025	PWY-5177	glutaryl-CoA degradation
CKY39_04025	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_04025	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_04025	PWY-6583	pyruvate fermentation to butanol I
CKY39_04025	PWY-6863	pyruvate fermentation to hexanol
CKY39_04025	PWY-6883	pyruvate fermentation to butanol II
CKY39_04025	PWY-6944	androstenedione degradation
CKY39_04025	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_04025	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_04025	PWY-7007	methyl ketone biosynthesis
CKY39_04025	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_04025	PWY-7094	fatty acid salvage
CKY39_04025	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_04025	PWY-735	jasmonic acid biosynthesis
CKY39_04025	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_04025	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_04025	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_04025	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_04025	PWY-7726	CKY39_04025
CKY39_04025	PWY-7778	CKY39_04025
CKY39_04025	PWY-7779	CKY39_04025
CKY39_04095	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_04180	PWY-723	alkylnitronates degradation
CKY39_04235	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_04235	PWY-5109	2-methylbutanoate biosynthesis
CKY39_04235	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_04235	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_04235	PWY-5177	glutaryl-CoA degradation
CKY39_04235	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_04235	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_04235	PWY-6583	pyruvate fermentation to butanol I
CKY39_04235	PWY-6863	pyruvate fermentation to hexanol
CKY39_04235	PWY-6883	pyruvate fermentation to butanol II
CKY39_04235	PWY-6944	androstenedione degradation
CKY39_04235	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_04235	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_04235	PWY-7007	methyl ketone biosynthesis
CKY39_04235	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_04235	PWY-7094	fatty acid salvage
CKY39_04235	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_04235	PWY-735	jasmonic acid biosynthesis
CKY39_04235	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_04235	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_04235	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_04235	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_04235	PWY-7726	CKY39_04235
CKY39_04235	PWY-7778	CKY39_04235
CKY39_04235	PWY-7779	CKY39_04235
CKY39_04270	PWY-5686	UMP biosynthesis
CKY39_04270	PWY-7790	CKY39_04270
CKY39_04270	PWY-7791	CKY39_04270
CKY39_04305	PWY-6936	seleno-amino acid biosynthesis
CKY39_04510	PWY-2941	L-lysine biosynthesis II
CKY39_04510	PWY-5097	L-lysine biosynthesis VI
CKY39_04580	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04580	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04590	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_04590	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_04590	PWY-7953	CKY39_04590
CKY39_04595	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04595	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_04595	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04600	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_04600	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_04605	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04605	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_04605	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_04605	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04610	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04610	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_04610	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_04610	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_04615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_04615	PWY-7953	CKY39_04615
CKY39_04620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_04620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_04620	PWY-7953	CKY39_04620
CKY39_04650	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_04650	PWY-181	photorespiration
CKY39_04650	PWY-2161	folate polyglutamylation
CKY39_04650	PWY-2201	folate transformations I
CKY39_04650	PWY-3661	glycine betaine degradation I
CKY39_04650	PWY-3661-1	glycine betaine degradation II (mammalian)
CKY39_04650	PWY-3841	folate transformations II
CKY39_04650	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_04680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04680	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_04680	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_04680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04685	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_04715	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_04715	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_04715	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_04715	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_04740	PWY-7883	CKY39_04740
CKY39_04785	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKY39_04785	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_04785	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKY39_04785	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKY39_04785	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_04785	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_04785	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_04785	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKY39_04895	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKY39_04895	PWY-6148	tetrahydromethanopterin biosynthesis
CKY39_04895	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CKY39_04895	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKY39_04960	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKY39_05040	PWY-6749	CMP-legionaminate biosynthesis I
CKY39_05105	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CKY39_05105	PWY-6853	ethylene biosynthesis II (microbes)
CKY39_05105	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CKY39_05145	PWY-6317	galactose degradation I (Leloir pathway)
CKY39_05215	PWY-5101	L-isoleucine biosynthesis II
CKY39_05215	PWY-5103	L-isoleucine biosynthesis III
CKY39_05215	PWY-5104	L-isoleucine biosynthesis IV
CKY39_05215	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_05240	PWY-7052	cyanophycin metabolism
CKY39_05245	PWY-7052	cyanophycin metabolism
CKY39_05260	PWY-6703	preQ<sub>0</sub> biosynthesis
CKY39_05360	PWY-7782	CKY39_05360
CKY39_05360	PWY-7783	CKY39_05360
CKY39_05365	PWY-7782	CKY39_05365
CKY39_05365	PWY-7783	CKY39_05365
CKY39_05380	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_05380	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKY39_05380	PWY-6596	adenosine nucleotides degradation I
CKY39_05380	PWY-6606	guanosine nucleotides degradation II
CKY39_05380	PWY-6607	guanosine nucleotides degradation I
CKY39_05380	PWY-6608	guanosine nucleotides degradation III
CKY39_05380	PWY-7185	UTP and CTP dephosphorylation I
CKY39_05380	PWY-7821	CKY39_05380
CKY39_05515	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKY39_05545	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_05545	PWY-5723	Rubisco shunt
CKY39_05550	PWY-3801	sucrose degradation II (sucrose synthase)
CKY39_05550	PWY-5054	sorbitol biosynthesis I
CKY39_05550	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKY39_05550	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CKY39_05550	PWY-5659	GDP-mannose biosynthesis
CKY39_05550	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_05550	PWY-621	sucrose degradation III (sucrose invertase)
CKY39_05550	PWY-622	starch biosynthesis
CKY39_05550	PWY-6981	chitin biosynthesis
CKY39_05550	PWY-6992	1,5-anhydrofructose degradation
CKY39_05550	PWY-7238	sucrose biosynthesis II
CKY39_05550	PWY-7347	sucrose biosynthesis III
CKY39_05550	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKY39_05595	PWY-6531	mannitol cycle
CKY39_05605	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_05605	PWY-5723	Rubisco shunt
CKY39_05620	PWY-4261	glycerol degradation I
CKY39_05705	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKY39_05705	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CKY39_05755	PWY-2941	L-lysine biosynthesis II
CKY39_05755	PWY-2942	L-lysine biosynthesis III
CKY39_05755	PWY-5097	L-lysine biosynthesis VI
CKY39_05770	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_05770	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_05770	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_05770	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_05800	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_05805	PWY-6164	3-dehydroquinate biosynthesis I
CKY39_05895	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_05895	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_05895	PWY-7953	CKY39_05895
CKY39_06055	PWY-3821	galactose degradation III
CKY39_06055	PWY-6317	galactose degradation I (Leloir pathway)
CKY39_06055	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CKY39_06055	PWY-6527	stachyose degradation
CKY39_06055	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CKY39_06055	PWY-7344	UDP-D-galactose biosynthesis
CKY39_06130	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_06130	PWY-6692	Fe(II) oxidation
CKY39_06130	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CKY39_06130	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_06165	PWY-5532	adenosine nucleotides degradation IV
CKY39_06165	PWY-5723	Rubisco shunt
CKY39_06395	PWY-7805	CKY39_06395
CKY39_06395	PWY-7807	CKY39_06395
CKY39_06485	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_06625	PWY-6825	phosphatidylcholine biosynthesis V
CKY39_06685	PWY-1341	phenylacetate degradation II (anaerobic)
CKY39_06685	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKY39_06685	PWY-7716	CKY39_06685
CKY39_06870	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_06875	PWY-5704	urea degradation II
CKY39_06880	PWY-5704	urea degradation II
CKY39_06890	PWY-5704	urea degradation II
CKY39_06925	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_06965	PWY-7851	CKY39_06965
CKY39_07010	PWY-3341	L-proline biosynthesis III
CKY39_07010	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CKY39_07055	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_07190	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKY39_07200	PWY-5663	tetrahydrobiopterin biosynthesis I
CKY39_07200	PWY-5664	tetrahydrobiopterin biosynthesis II
CKY39_07200	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKY39_07200	PWY-6703	preQ<sub>0</sub> biosynthesis
CKY39_07200	PWY-6983	tetrahydrobiopterin biosynthesis III
CKY39_07200	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CKY39_07200	PWY-7852	CKY39_07200
CKY39_07275	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_07275	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_07295	PWY-5667	CDP-diacylglycerol biosynthesis I
CKY39_07295	PWY-5981	CDP-diacylglycerol biosynthesis III
CKY39_07295	PWY-7902	CKY39_07295
CKY39_07300	PWY-5316	nicotine biosynthesis
CKY39_07300	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_07300	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CKY39_07300	PWY-7342	superpathway of nicotine biosynthesis
CKY39_07305	PWY-5316	nicotine biosynthesis
CKY39_07305	PWY-7342	superpathway of nicotine biosynthesis
CKY39_07315	PWY-6703	preQ<sub>0</sub> biosynthesis
CKY39_07325	PWY-6654	phosphopantothenate biosynthesis III
CKY39_07330	PWY-5316	nicotine biosynthesis
CKY39_07330	PWY-7342	superpathway of nicotine biosynthesis
CKY39_07510	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CKY39_07590	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_07590	PWY-4521	arsenite oxidation I (respiratory)
CKY39_07590	PWY-6692	Fe(II) oxidation
CKY39_07590	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_07590	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CKY39_07635	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKY39_07635	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKY39_07635	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKY39_07635	PWY-6113	superpathway of mycolate biosynthesis
CKY39_07635	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKY39_07635	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKY39_07635	PWY-7663	gondoate biosynthesis (anaerobic)
CKY39_07635	PWY-7664	oleate biosynthesis IV (anaerobic)
CKY39_07635	PWY-7858	CKY39_07635
CKY39_07635	PWYG-321	mycolate biosynthesis
CKY39_07765	PWY-7560	methylerythritol phosphate pathway II
CKY39_07775	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CKY39_08060	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_08060	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_08060	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_08060	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_08185	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKY39_08185	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CKY39_08275	PWY-7980	CKY39_08275
CKY39_08520	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CKY39_08520	PWY-7494	choline degradation IV
CKY39_08820	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_08820	PWY-4521	arsenite oxidation I (respiratory)
CKY39_08820	PWY-6692	Fe(II) oxidation
CKY39_08820	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_08940	PWY-5686	UMP biosynthesis
CKY39_08940	PWY-7790	CKY39_08940
CKY39_08940	PWY-7791	CKY39_08940
CKY39_08955	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_09005	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_09005	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_09020	PWY-5691	urate degradation to allantoin I
CKY39_09020	PWY-7394	urate degradation to allantoin II
CKY39_09020	PWY-7849	CKY39_09020
CKY39_09035	PWY-5691	urate degradation to allantoin I
CKY39_09035	PWY-7394	urate degradation to allantoin II
CKY39_09035	PWY-7849	CKY39_09035
CKY39_09125	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_09125	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKY39_09125	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CKY39_09125	PWY-6596	adenosine nucleotides degradation I
CKY39_09125	PWY-6606	guanosine nucleotides degradation II
CKY39_09125	PWY-6607	guanosine nucleotides degradation I
CKY39_09125	PWY-6608	guanosine nucleotides degradation III
CKY39_09125	PWY-6999	theophylline degradation
CKY39_09130	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_09130	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKY39_09130	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CKY39_09130	PWY-6596	adenosine nucleotides degradation I
CKY39_09130	PWY-6606	guanosine nucleotides degradation II
CKY39_09130	PWY-6607	guanosine nucleotides degradation I
CKY39_09130	PWY-6608	guanosine nucleotides degradation III
CKY39_09130	PWY-6999	theophylline degradation
CKY39_09180	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKY39_09180	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKY39_09180	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKY39_09180	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKY39_09180	PWY-6113	superpathway of mycolate biosynthesis
CKY39_09180	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKY39_09180	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKY39_09180	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKY39_09180	PWY-7663	gondoate biosynthesis (anaerobic)
CKY39_09180	PWY-7664	oleate biosynthesis IV (anaerobic)
CKY39_09180	PWY-7858	CKY39_09180
CKY39_09180	PWYG-321	mycolate biosynthesis
CKY39_09185	PWY-6610	adenine and adenosine salvage IV
CKY39_09235	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_09235	PWY-6606	guanosine nucleotides degradation II
CKY39_09235	PWY-6608	guanosine nucleotides degradation III
CKY39_09235	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CKY39_09255	PWY-5350	thiosulfate disproportionation III (rhodanese)
CKY39_09255	PWY-7927	CKY39_09255
CKY39_09260	PWY-5331	taurine biosynthesis
CKY39_09360	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_09450	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_09550	PWY-702	L-methionine biosynthesis II
CKY39_09600	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_09600	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_09620	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_09720	PWY-6854	ethylene biosynthesis III (microbes)
CKY39_09810	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_09810	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_09810	PWY-7560	methylerythritol phosphate pathway II
CKY39_09845	PWY-6832	2-aminoethylphosphonate degradation II
CKY39_09875	PWY-5982	sulfoacetaldehyde degradation II
CKY39_09890	PWY-5642	2,4-dinitrotoluene degradation
CKY39_10115	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CKY39_10120	PWY-3461	L-tyrosine biosynthesis II
CKY39_10120	PWY-3462	L-phenylalanine biosynthesis II
CKY39_10120	PWY-6120	L-tyrosine biosynthesis III
CKY39_10120	PWY-6627	salinosporamide A biosynthesis
CKY39_10120	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CKY39_10120	PWY-7626	bacilysin biosynthesis
CKY39_10145	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CKY39_10145	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CKY39_10145	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CKY39_10145	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CKY39_10145	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CKY39_10145	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CKY39_10145	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CKY39_10145	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CKY39_10145	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CKY39_10145	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CKY39_10150	PWY-181	photorespiration
CKY39_10190	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_10190	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_10190	PWY-7560	methylerythritol phosphate pathway II
CKY39_10200	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CKY39_10200	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKY39_10210	PWY-1281	sulfoacetaldehyde degradation I
CKY39_10210	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKY39_10210	PWY-5482	pyruvate fermentation to acetate II
CKY39_10210	PWY-5485	pyruvate fermentation to acetate IV
CKY39_10210	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_10210	PWY-6637	sulfolactate degradation II
CKY39_10210	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_10215	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKY39_10215	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CKY39_10240	PWY-5676	acetyl-CoA fermentation to butanoate II
CKY39_10240	PWY-5741	ethylmalonyl-CoA pathway
CKY39_10240	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_10240	PWY-7948	CKY39_10240
CKY39_10290	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_10305	PWY-4041	&gamma;-glutamyl cycle
CKY39_10305	PWY-7942	CKY39_10305
CKY39_10315	PWY-4041	&gamma;-glutamyl cycle
CKY39_10315	PWY-7942	CKY39_10315
CKY39_10720	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CKY39_10760	PWY-6167	flavin biosynthesis II (archaea)
CKY39_10800	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_10825	PWY-6348	phosphate acquisition
CKY39_11005	PWY-5694	allantoin degradation to glyoxylate I
CKY39_11005	PWY-5705	allantoin degradation to glyoxylate III
CKY39_11025	PWY-4041	&gamma;-glutamyl cycle
CKY39_11025	PWY-4061	glutathione-mediated detoxification I
CKY39_11025	PWY-5826	hypoglycin biosynthesis
CKY39_11025	PWY-6842	glutathione-mediated detoxification II
CKY39_11025	PWY-7112	4-hydroxy-2-nonenal detoxification
CKY39_11025	PWY-7559	glutathione degradation (DUG pathway - yeast)
CKY39_11060	PWY-381	nitrate reduction II (assimilatory)
CKY39_11060	PWY-5675	nitrate reduction V (assimilatory)
CKY39_11060	PWY-6549	L-glutamine biosynthesis III
CKY39_11060	PWY-6963	ammonia assimilation cycle I
CKY39_11060	PWY-6964	ammonia assimilation cycle II
CKY39_11100	PWY-6823	molybdenum cofactor biosynthesis
CKY39_11105	PWY-6823	molybdenum cofactor biosynthesis
CKY39_11335	PWY-6420	pyrroloquinoline quinone biosynthesis
CKY39_11370	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_11370	PWY-6416	quinate degradation II
CKY39_11370	PWY-6707	gallate biosynthesis
CKY39_11420	PWY-3841	folate transformations II
CKY39_11420	PWY-6614	tetrahydrofolate biosynthesis
CKY39_11430	PWY-3841	folate transformations II
CKY39_11430	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_11430	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_11430	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKY39_11430	PWY-7199	pyrimidine deoxyribonucleosides salvage
CKY39_11430	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKY39_11435	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CKY39_11435	PWY-581	indole-3-acetate biosynthesis II
CKY39_11435	PWY-7308	acrylonitrile degradation I
CKY39_11440	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CKY39_11440	PWY-581	indole-3-acetate biosynthesis II
CKY39_11440	PWY-7308	acrylonitrile degradation I
CKY39_11445	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CKY39_11445	PWY-581	indole-3-acetate biosynthesis II
CKY39_11445	PWY-7308	acrylonitrile degradation I
CKY39_11590	PWY-5530	sorbitol biosynthesis II
CKY39_11590	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_11650	PWY-4202	arsenate detoxification I (glutaredoxin)
CKY39_11650	PWY-4621	arsenate detoxification II (glutaredoxin)
CKY39_11690	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_11700	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_11700	PWY-3162	L-tryptophan degradation V (side chain pathway)
CKY39_11700	PWY-5057	L-valine degradation II
CKY39_11700	PWY-5076	L-leucine degradation III
CKY39_11700	PWY-5078	L-isoleucine degradation II
CKY39_11700	PWY-5079	L-phenylalanine degradation III
CKY39_11700	PWY-5082	L-methionine degradation III
CKY39_11700	PWY-5480	pyruvate fermentation to ethanol I
CKY39_11700	PWY-5486	pyruvate fermentation to ethanol II
CKY39_11700	PWY-5751	phenylethanol biosynthesis
CKY39_11700	PWY-6313	serotonin degradation
CKY39_11700	PWY-6333	acetaldehyde biosynthesis I
CKY39_11700	PWY-6342	noradrenaline and adrenaline degradation
CKY39_11700	PWY-6587	pyruvate fermentation to ethanol III
CKY39_11700	PWY-6802	salidroside biosynthesis
CKY39_11700	PWY-6871	3-methylbutanol biosynthesis
CKY39_11700	PWY-7013	L-1,2-propanediol degradation
CKY39_11700	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_11700	PWY-7118	chitin degradation to ethanol
CKY39_11700	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CKY39_11700	PWY-7798	CKY39_11700
CKY39_11725	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_11725	PWY-6416	quinate degradation II
CKY39_11725	PWY-6707	gallate biosynthesis
CKY39_11770	PWY-5669	phosphatidylethanolamine biosynthesis I
CKY39_11795	PWY-6497	D-galactarate degradation II
CKY39_11835	PWY-6486	D-galacturonate degradation II
CKY39_11835	PWY-6497	D-galactarate degradation II
CKY39_11835	PWY-6499	D-glucarate degradation II
CKY39_11835	PWY-6501	D-glucuronate degradation II
CKY39_11890	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKY39_11890	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKY39_11890	PWY-6936	seleno-amino acid biosynthesis
CKY39_11890	PWY-702	L-methionine biosynthesis II
CKY39_11960	PWY-6871	3-methylbutanol biosynthesis
CKY39_12030	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_12100	PWY-5269	cardiolipin biosynthesis II
CKY39_12100	PWY-5668	cardiolipin biosynthesis I
CKY39_12100	PWY-7817	CKY39_12100
CKY39_12400	PWY-6855	chitin degradation I (archaea)
CKY39_12400	PWY-6902	chitin degradation II
CKY39_12400	PWY-7822	CKY39_12400
CKY39_12475	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_12475	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKY39_12475	PWY-6596	adenosine nucleotides degradation I
CKY39_12475	PWY-6606	guanosine nucleotides degradation II
CKY39_12475	PWY-6607	guanosine nucleotides degradation I
CKY39_12475	PWY-6608	guanosine nucleotides degradation III
CKY39_12475	PWY-7185	UTP and CTP dephosphorylation I
CKY39_12475	PWY-7821	CKY39_12475
CKY39_12620	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_12620	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_12720	PWY-6823	molybdenum cofactor biosynthesis
CKY39_12730	PWY-2941	L-lysine biosynthesis II
CKY39_12730	PWY-2942	L-lysine biosynthesis III
CKY39_12730	PWY-5097	L-lysine biosynthesis VI
CKY39_12740	PWY-6823	molybdenum cofactor biosynthesis
CKY39_12740	PWY-7887	CKY39_12740
CKY39_12745	PWY-6348	phosphate acquisition
CKY39_12835	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_13015	PWY-1042	glycolysis IV (plant cytosol)
CKY39_13015	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_13015	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_13015	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_13015	PWY-5723	Rubisco shunt
CKY39_13015	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_13015	PWY-6886	1-butanol autotrophic biosynthesis
CKY39_13015	PWY-6901	superpathway of glucose and xylose degradation
CKY39_13015	PWY-7003	glycerol degradation to butanol
CKY39_13015	PWY-7124	ethylene biosynthesis V (engineered)
CKY39_13015	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKY39_13025	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKY39_13025	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CKY39_13030	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CKY39_13030	PWY-7177	UTP and CTP dephosphorylation II
CKY39_13030	PWY-7185	UTP and CTP dephosphorylation I
CKY39_13035	PWY-7851	CKY39_13035
CKY39_13085	PWY-2941	L-lysine biosynthesis II
CKY39_13085	PWY-2942	L-lysine biosynthesis III
CKY39_13085	PWY-5097	L-lysine biosynthesis VI
CKY39_13205	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CKY39_13205	PWY-7494	choline degradation IV
CKY39_13225	PWY-43	putrescine biosynthesis II
CKY39_13235	PWY-43	putrescine biosynthesis II
CKY39_13260	PWY-5392	reductive TCA cycle II
CKY39_13260	PWY-5537	pyruvate fermentation to acetate V
CKY39_13260	PWY-5538	pyruvate fermentation to acetate VI
CKY39_13260	PWY-5690	TCA cycle II (plants and fungi)
CKY39_13260	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_13260	PWY-6728	methylaspartate cycle
CKY39_13260	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_13260	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_13385	PWY-4261	glycerol degradation I
CKY39_13395	PWY-4261	glycerol degradation I
CKY39_13395	PWY-6118	glycerol-3-phosphate shuttle
CKY39_13395	PWY-6952	glycerophosphodiester degradation
CKY39_13435	PWY-4381	fatty acid biosynthesis initiation I
CKY39_13445	PWY-7019	butirosin biosynthesis
CKY39_13525	PWY-723	alkylnitronates degradation
CKY39_13555	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
CKY39_13670	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_13670	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKY39_13670	PWY-6638	sulfolactate degradation III
CKY39_13670	PWY-6642	(<i>R</i>)-cysteate degradation
CKY39_13670	PWY-6643	coenzyme M biosynthesis II
CKY39_13670	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_13670	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_13670	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_13740	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKY39_13740	PWY-6164	3-dehydroquinate biosynthesis I
CKY39_13740	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CKY39_13765	PWY-7799	CKY39_13765
CKY39_13765	PWY-7800	CKY39_13765
CKY39_13825	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_13830	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CKY39_13965	PWY-723	alkylnitronates degradation
CKY39_14290	PWY-5642	2,4-dinitrotoluene degradation
CKY39_14325	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKY39_14325	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CKY39_14325	PWY-6936	seleno-amino acid biosynthesis
CKY39_14325	PWY-702	L-methionine biosynthesis II
CKY39_14645	PWY-1001	cellulose biosynthesis
CKY39_14975	PWY-7782	CKY39_14975
CKY39_14975	PWY-7783	CKY39_14975
CKY39_15145	PWY-6167	flavin biosynthesis II (archaea)
CKY39_15145	PWY-6168	flavin biosynthesis III (fungi)
CKY39_15150	PWY-6167	flavin biosynthesis II (archaea)
CKY39_15150	PWY-6168	flavin biosynthesis III (fungi)
CKY39_15150	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKY39_15150	PWY-7991	CKY39_15150
CKY39_15155	PWY-6167	flavin biosynthesis II (archaea)
CKY39_15155	PWY-6168	flavin biosynthesis III (fungi)
CKY39_15155	PWY-7980	CKY39_15155
CKY39_15160	PWY-7991	CKY39_15160
CKY39_15170	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_15170	PWY-181	photorespiration
CKY39_15170	PWY-2161	folate polyglutamylation
CKY39_15170	PWY-2201	folate transformations I
CKY39_15170	PWY-3661	glycine betaine degradation I
CKY39_15170	PWY-3661-1	glycine betaine degradation II (mammalian)
CKY39_15170	PWY-3841	folate transformations II
CKY39_15170	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_15230	PWY-4381	fatty acid biosynthesis initiation I
CKY39_15230	PWY-5743	3-hydroxypropanoate cycle
CKY39_15230	PWY-5744	glyoxylate assimilation
CKY39_15230	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_15230	PWY-6722	candicidin biosynthesis
CKY39_15240	PWY-2941	L-lysine biosynthesis II
CKY39_15240	PWY-2942	L-lysine biosynthesis III
CKY39_15240	PWY-5097	L-lysine biosynthesis VI
CKY39_15240	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CKY39_15240	PWY-6559	spermidine biosynthesis II
CKY39_15240	PWY-6562	norspermidine biosynthesis
CKY39_15240	PWY-7153	grixazone biosynthesis
CKY39_15240	PWY-7977	CKY39_15240
CKY39_15550	PWY-7072	hopanoid biosynthesis (bacteria)
CKY39_15560	PWY-7072	hopanoid biosynthesis (bacteria)
CKY39_15635	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_15635	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_15640	PWY-5392	reductive TCA cycle II
CKY39_15640	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKY39_15640	PWY-5690	TCA cycle II (plants and fungi)
CKY39_15640	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_15640	PWY-6728	methylaspartate cycle
CKY39_15640	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_15640	PWY-7254	TCA cycle VII (acetate-producers)
CKY39_15640	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_15680	PWY-5108	L-isoleucine biosynthesis V
CKY39_15680	PWY-5132	humulone biosynthesis
CKY39_15680	PWY-5133	cohumulone biosynthesis
CKY39_15680	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CKY39_15680	PWY-7118	chitin degradation to ethanol
CKY39_15680	PWY-7857	CKY39_15680
CKY39_15705	PWY-5101	L-isoleucine biosynthesis II
CKY39_15705	PWY-5103	L-isoleucine biosynthesis III
CKY39_15705	PWY-5104	L-isoleucine biosynthesis IV
CKY39_15705	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_15760	PWY-7824	CKY39_15760
CKY39_15805	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKY39_15805	PWY-7962	CKY39_15805
CKY39_15805	PWY-7971	CKY39_15805
CKY39_15805	PWY-7972	CKY39_15805
CKY39_15830	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CKY39_15915	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKY39_15915	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKY39_15915	PWY-7964	CKY39_15915
CKY39_15915	PWY-7965	CKY39_15915
CKY39_15915	PWY-7966	CKY39_15915
CKY39_15915	PWY-7967	CKY39_15915
CKY39_15915	PWY-7968	CKY39_15915
CKY39_15915	PWY-7969	CKY39_15915
CKY39_15915	PWY-7970	CKY39_15915
CKY39_15920	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CKY39_15920	PWY-6269	adenosylcobalamin salvage from cobinamide II
CKY39_15920	PWY-7961	CKY39_15920
CKY39_15920	PWY-7963	CKY39_15920
CKY39_15920	PWY-7964	CKY39_15920
CKY39_15920	PWY-7965	CKY39_15920
CKY39_15920	PWY-7966	CKY39_15920
CKY39_15920	PWY-7967	CKY39_15920
CKY39_15920	PWY-7968	CKY39_15920
CKY39_15920	PWY-7969	CKY39_15920
CKY39_15920	PWY-7970	CKY39_15920
CKY39_15920	PWY-7975	CKY39_15920
CKY39_15970	PWY-7560	methylerythritol phosphate pathway II
CKY39_15975	PWY-7560	methylerythritol phosphate pathway II
CKY39_16285	PWY-6855	chitin degradation I (archaea)
CKY39_16285	PWY-6902	chitin degradation II
CKY39_16285	PWY-7822	CKY39_16285
CKY39_16355	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_16385	PWY-5667	CDP-diacylglycerol biosynthesis I
CKY39_16385	PWY-5981	CDP-diacylglycerol biosynthesis III
CKY39_16385	PWY-7817	CKY39_16385
CKY39_16390	PWY-7560	methylerythritol phosphate pathway II
CKY39_16415	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKY39_16415	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKY39_16415	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKY39_16415	PWY-5994	palmitate biosynthesis I (animals and fungi)
CKY39_16415	PWY-6113	superpathway of mycolate biosynthesis
CKY39_16415	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKY39_16415	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKY39_16415	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKY39_16415	PWY-7663	gondoate biosynthesis (anaerobic)
CKY39_16415	PWY-7664	oleate biosynthesis IV (anaerobic)
CKY39_16415	PWY-7858	CKY39_16415
CKY39_16415	PWYG-321	mycolate biosynthesis
CKY39_16440	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_16440	PWY-5686	UMP biosynthesis
CKY39_16440	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_16440	PWY-7790	CKY39_16440
CKY39_16440	PWY-7791	CKY39_16440
CKY39_16445	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_16445	PWY-5686	UMP biosynthesis
CKY39_16445	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_16445	PWY-7790	CKY39_16445
CKY39_16445	PWY-7791	CKY39_16445
CKY39_16485	PWY-6614	tetrahydrofolate biosynthesis
CKY39_16490	PWY-6749	CMP-legionaminate biosynthesis I
CKY39_16520	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_16520	PWY-5109	2-methylbutanoate biosynthesis
CKY39_16520	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_16520	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_16520	PWY-5177	glutaryl-CoA degradation
CKY39_16520	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_16520	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_16520	PWY-6583	pyruvate fermentation to butanol I
CKY39_16520	PWY-6863	pyruvate fermentation to hexanol
CKY39_16520	PWY-6883	pyruvate fermentation to butanol II
CKY39_16520	PWY-6944	androstenedione degradation
CKY39_16520	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_16520	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_16520	PWY-7007	methyl ketone biosynthesis
CKY39_16520	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_16520	PWY-7094	fatty acid salvage
CKY39_16520	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_16520	PWY-735	jasmonic acid biosynthesis
CKY39_16520	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_16520	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_16520	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_16520	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_16520	PWY-7726	CKY39_16520
CKY39_16520	PWY-7778	CKY39_16520
CKY39_16520	PWY-7779	CKY39_16520
CKY39_16550	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_16555	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKY39_16585	PWY-6854	ethylene biosynthesis III (microbes)
CKY39_16800	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKY39_16800	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CKY39_16800	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CKY39_16805	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CKY39_16870	PWY-5350	thiosulfate disproportionation III (rhodanese)
CKY39_16870	PWY-7927	CKY39_16870
CKY39_17010	PWY-5691	urate degradation to allantoin I
CKY39_17010	PWY-7394	urate degradation to allantoin II
CKY39_17010	PWY-7849	CKY39_17010
CKY39_17020	PWY-5691	urate degradation to allantoin I
CKY39_17020	PWY-7394	urate degradation to allantoin II
CKY39_17020	PWY-7849	CKY39_17020
CKY39_17075	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKY39_17075	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_17075	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_17075	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CKY39_17075	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKY39_17075	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKY39_17290	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKY39_17290	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKY39_17355	PWY-6832	2-aminoethylphosphonate degradation II
CKY39_17475	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_17475	PWY-5109	2-methylbutanoate biosynthesis
CKY39_17475	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_17475	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_17475	PWY-5177	glutaryl-CoA degradation
CKY39_17475	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_17475	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_17475	PWY-6583	pyruvate fermentation to butanol I
CKY39_17475	PWY-6863	pyruvate fermentation to hexanol
CKY39_17475	PWY-6883	pyruvate fermentation to butanol II
CKY39_17475	PWY-6944	androstenedione degradation
CKY39_17475	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_17475	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_17475	PWY-7007	methyl ketone biosynthesis
CKY39_17475	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_17475	PWY-7094	fatty acid salvage
CKY39_17475	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_17475	PWY-735	jasmonic acid biosynthesis
CKY39_17475	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_17475	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_17475	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_17475	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_17475	PWY-7726	CKY39_17475
CKY39_17475	PWY-7778	CKY39_17475
CKY39_17475	PWY-7779	CKY39_17475
CKY39_17560	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_17575	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKY39_17575	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKY39_17575	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKY39_17580	PWY-7799	CKY39_17580
CKY39_17580	PWY-7800	CKY39_17580
CKY39_17605	PWY-2723	trehalose degradation V
CKY39_17605	PWY-3801	sucrose degradation II (sucrose synthase)
CKY39_17605	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CKY39_17605	PWY-5661	GDP-glucose biosynthesis
CKY39_17605	PWY-5940	streptomycin biosynthesis
CKY39_17605	PWY-5941	glycogen degradation II (eukaryotic)
CKY39_17605	PWY-622	starch biosynthesis
CKY39_17605	PWY-6317	galactose degradation I (Leloir pathway)
CKY39_17605	PWY-6731	starch degradation III
CKY39_17605	PWY-6737	starch degradation V
CKY39_17605	PWY-6749	CMP-legionaminate biosynthesis I
CKY39_17605	PWY-6981	chitin biosynthesis
CKY39_17605	PWY-7238	sucrose biosynthesis II
CKY39_17605	PWY-7343	UDP-glucose biosynthesis
CKY39_17605	PWY-7900	CKY39_17605
CKY39_17605	PWY-7902	CKY39_17605
CKY39_17755	PWY-6168	flavin biosynthesis III (fungi)
CKY39_17755	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKY39_17755	PWY-7991	CKY39_17755
CKY39_17765	PWY-7183	pyrimidine nucleobases salvage I
CKY39_17835	PWY-3461	L-tyrosine biosynthesis II
CKY39_17835	PWY-3462	L-phenylalanine biosynthesis II
CKY39_17835	PWY-6120	L-tyrosine biosynthesis III
CKY39_17835	PWY-6406	salicylate biosynthesis I
CKY39_17835	PWY-6627	salinosporamide A biosynthesis
CKY39_17835	PWY-7626	bacilysin biosynthesis
CKY39_17870	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_17915	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CKY39_17915	PWY-6596	adenosine nucleotides degradation I
CKY39_17915	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_18025	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CKY39_18025	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CKY39_18025	PWY-5989	stearate biosynthesis II (bacteria and plants)
CKY39_18025	PWY-6113	superpathway of mycolate biosynthesis
CKY39_18025	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CKY39_18025	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CKY39_18025	PWY-7663	gondoate biosynthesis (anaerobic)
CKY39_18025	PWY-7664	oleate biosynthesis IV (anaerobic)
CKY39_18025	PWY-7858	CKY39_18025
CKY39_18025	PWYG-321	mycolate biosynthesis
CKY39_18060	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_18060	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_18070	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_18070	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_18080	PWY-6832	2-aminoethylphosphonate degradation II
CKY39_18095	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_18190	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKY39_18230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_18385	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_18385	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CKY39_18385	PWY-7761	CKY39_18385
CKY39_18390	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CKY39_18395	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKY39_18395	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKY39_18395	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKY39_18405	PWY-5839	menaquinol-7 biosynthesis
CKY39_18405	PWY-5844	menaquinol-9 biosynthesis
CKY39_18405	PWY-5849	menaquinol-6 biosynthesis
CKY39_18405	PWY-5890	menaquinol-10 biosynthesis
CKY39_18405	PWY-5891	menaquinol-11 biosynthesis
CKY39_18405	PWY-5892	menaquinol-12 biosynthesis
CKY39_18405	PWY-5895	menaquinol-13 biosynthesis
CKY39_18530	PWY-6654	phosphopantothenate biosynthesis III
CKY39_18570	PWY-6936	seleno-amino acid biosynthesis
CKY39_18570	PWY-7274	D-cycloserine biosynthesis
CKY39_18570	PWY-7870	CKY39_18570
CKY39_18625	PWY-7723	CKY39_18625
CKY39_18640	PWY-7892	CKY39_18640
CKY39_18790	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_18815	PWY-6683	sulfate reduction III (assimilatory)
CKY39_18830	PWY-5278	sulfite oxidation III
CKY39_18830	PWY-5340	sulfate activation for sulfonation
CKY39_18830	PWY-6683	sulfate reduction III (assimilatory)
CKY39_18830	PWY-6932	selenate reduction
CKY39_18835	PWY-5278	sulfite oxidation III
CKY39_18835	PWY-5340	sulfate activation for sulfonation
CKY39_18835	PWY-6683	sulfate reduction III (assimilatory)
CKY39_18835	PWY-6932	selenate reduction
CKY39_18845	PWY-101	photosynthesis light reactions
CKY39_18880	PWY-6910	hydroxymethylpyrimidine salvage
CKY39_18880	PWY-7356	thiamin salvage IV (yeast)
CKY39_18880	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKY39_18895	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_18895	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_18900	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CKY39_18900	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CKY39_18900	PWY-6897	thiamin salvage II
CKY39_18900	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CKY39_18900	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CKY39_18900	PWY-7356	thiamin salvage IV (yeast)
CKY39_18900	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CKY39_18990	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_19060	PWY-7801	CKY39_19060
CKY39_19065	PWY-7802	CKY39_19065
CKY39_19085	PWY-6871	3-methylbutanol biosynthesis
CKY39_19090	PWY-5669	phosphatidylethanolamine biosynthesis I
CKY39_19095	PWY-5103	L-isoleucine biosynthesis III
CKY39_19095	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_19100	PWY-5101	L-isoleucine biosynthesis II
CKY39_19100	PWY-5103	L-isoleucine biosynthesis III
CKY39_19100	PWY-5104	L-isoleucine biosynthesis IV
CKY39_19100	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKY39_19100	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKY39_19100	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKY39_19100	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_19105	PWY-5101	L-isoleucine biosynthesis II
CKY39_19105	PWY-5103	L-isoleucine biosynthesis III
CKY39_19105	PWY-5104	L-isoleucine biosynthesis IV
CKY39_19105	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKY39_19105	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKY39_19105	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKY39_19105	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_19130	PWY-7039	phosphatidate metabolism, as a signaling molecule
CKY39_19130	PWY-7817	CKY39_19130
CKY39_19145	PWY-5381	pyridine nucleotide cycling (plants)
CKY39_19145	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CKY39_19145	PWY-7761	CKY39_19145
CKY39_19160	PWY-7805	CKY39_19160
CKY39_19160	PWY-7807	CKY39_19160
CKY39_19165	PWY-7805	CKY39_19165
CKY39_19165	PWY-7807	CKY39_19165
CKY39_19230	PWY-4381	fatty acid biosynthesis initiation I
CKY39_19265	PWY-6854	ethylene biosynthesis III (microbes)
CKY39_19275	PWY-6823	molybdenum cofactor biosynthesis
CKY39_19285	PWY-6823	molybdenum cofactor biosynthesis
CKY39_19300	PWY-5386	methylglyoxal degradation I
CKY39_19380	PWY-7980	CKY39_19380
CKY39_19510	PWY-6855	chitin degradation I (archaea)
CKY39_19510	PWY-6902	chitin degradation II
CKY39_19510	PWY-7822	CKY39_19510
CKY39_20005	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_20080	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CKY39_20080	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CKY39_20080	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_20080	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_20080	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CKY39_20080	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CKY39_20080	PWY-7205	CMP phosphorylation
CKY39_20080	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CKY39_20080	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_20080	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_20080	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CKY39_20080	PWY-7224	purine deoxyribonucleosides salvage
CKY39_20080	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CKY39_20080	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CKY39_20130	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CKY39_20130	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKY39_20135	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKY39_20140	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKY39_20145	PWY-3941	&beta;-alanine biosynthesis II
CKY39_20145	PWY-5104	L-isoleucine biosynthesis IV
CKY39_20145	PWY-5108	L-isoleucine biosynthesis V
CKY39_20145	PWY-5132	humulone biosynthesis
CKY39_20145	PWY-5133	cohumulone biosynthesis
CKY39_20145	PWY-5747	2-methylcitrate cycle II
CKY39_20145	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CKY39_20145	PWY-7118	chitin degradation to ethanol
CKY39_20145	PWY-7857	CKY39_20145
CKY39_20180	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CKY39_20180	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CKY39_20195	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_20195	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_20195	PWY-7560	methylerythritol phosphate pathway II
CKY39_20210	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CKY39_20210	PWY-2201	folate transformations I
CKY39_20210	PWY-3841	folate transformations II
CKY39_20210	PWY-5030	L-histidine degradation III
CKY39_20210	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_20210	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CKY39_20210	PWY-7909	CKY39_20210
CKY39_20225	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_20225	PWY-5723	Rubisco shunt
CKY39_20230	PWY-5686	UMP biosynthesis
CKY39_20265	PWY-6012	acyl carrier protein metabolism I
CKY39_20265	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKY39_20265	PWY-6289	petrobactin biosynthesis
CKY39_20295	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CKY39_20330	PWY-3821	galactose degradation III
CKY39_20330	PWY-6317	galactose degradation I (Leloir pathway)
CKY39_20330	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CKY39_20330	PWY-6527	stachyose degradation
CKY39_20330	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CKY39_20330	PWY-7344	UDP-D-galactose biosynthesis
CKY39_20340	PWY-5659	GDP-mannose biosynthesis
CKY39_20340	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CKY39_20345	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CKY39_20345	PWY-5739	GDP-D-perosamine biosynthesis
CKY39_20345	PWY-5740	GDP-L-colitose biosynthesis
CKY39_20345	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CKY39_20345	PWY-7573	GDP-mycosamine biosynthesis
CKY39_20385	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CKY39_20400	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_20400	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKY39_20400	PWY-6638	sulfolactate degradation III
CKY39_20400	PWY-6642	(<i>R</i>)-cysteate degradation
CKY39_20400	PWY-6643	coenzyme M biosynthesis II
CKY39_20400	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_20400	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_20400	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_20445	PWY-4381	fatty acid biosynthesis initiation I
CKY39_20445	PWY-5743	3-hydroxypropanoate cycle
CKY39_20445	PWY-5744	glyoxylate assimilation
CKY39_20445	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_20445	PWY-6722	candicidin biosynthesis
CKY39_20515	PWY-6855	chitin degradation I (archaea)
CKY39_20515	PWY-6902	chitin degradation II
CKY39_20515	PWY-7822	CKY39_20515
CKY39_20710	PWY-5451	acetone degradation I (to methylglyoxal)
CKY39_20710	PWY-6588	pyruvate fermentation to acetone
CKY39_20710	PWY-6876	isopropanol biosynthesis
CKY39_20710	PWY-7466	acetone degradation III (to propane-1,2-diol)
CKY39_20785	PWY-5101	L-isoleucine biosynthesis II
CKY39_20785	PWY-5103	L-isoleucine biosynthesis III
CKY39_20785	PWY-5104	L-isoleucine biosynthesis IV
CKY39_20785	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CKY39_20785	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CKY39_20785	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CKY39_20785	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_21040	PWY-5506	methanol oxidation to formaldehyde IV
CKY39_21055	PWY-5676	acetyl-CoA fermentation to butanoate II
CKY39_21055	PWY-5741	ethylmalonyl-CoA pathway
CKY39_21055	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_21055	PWY-7948	CKY39_21055
CKY39_21250	PWY-7511	protein ubiquitylation
CKY39_21705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_21705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_21730	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CKY39_21730	PWY-7820	CKY39_21730
CKY39_21870	PWY-4041	&gamma;-glutamyl cycle
CKY39_21870	PWY-4061	glutathione-mediated detoxification I
CKY39_21870	PWY-5826	hypoglycin biosynthesis
CKY39_21870	PWY-6842	glutathione-mediated detoxification II
CKY39_21870	PWY-7112	4-hydroxy-2-nonenal detoxification
CKY39_21870	PWY-7559	glutathione degradation (DUG pathway - yeast)
CKY39_21880	PWY-5033	nicotinate degradation II
CKY39_21880	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CKY39_21880	PWY-7128	nicotine degradation III (VPP pathway)
CKY39_21880	PWY-722	nicotinate degradation I
CKY39_21900	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_21900	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CKY39_21900	PWY-6638	sulfolactate degradation III
CKY39_21900	PWY-6642	(<i>R</i>)-cysteate degradation
CKY39_21900	PWY-6643	coenzyme M biosynthesis II
CKY39_21900	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_21900	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_21900	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_22045	PWY-6550	carbazole degradation
CKY39_22050	PWY-5162	2-oxopentenoate degradation
CKY39_22050	PWY-5436	L-threonine degradation IV
CKY39_22050	PWY-5480	pyruvate fermentation to ethanol I
CKY39_22050	PWY-6587	pyruvate fermentation to ethanol III
CKY39_22050	PWY-7085	triethylamine degradation
CKY39_22050	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKY39_22055	PWY-5162	2-oxopentenoate degradation
CKY39_22085	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_22085	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_22085	PWY-7717	CKY39_22085
CKY39_22085	PWY-7733	CKY39_22085
CKY39_22085	PWY-7734	CKY39_22085
CKY39_22085	PWY-7765	CKY39_22085
CKY39_22115	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_22115	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_22115	PWY-7717	CKY39_22115
CKY39_22115	PWY-7733	CKY39_22115
CKY39_22115	PWY-7734	CKY39_22115
CKY39_22115	PWY-7765	CKY39_22115
CKY39_22135	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_22215	PWY-5392	reductive TCA cycle II
CKY39_22215	PWY-5537	pyruvate fermentation to acetate V
CKY39_22215	PWY-5538	pyruvate fermentation to acetate VI
CKY39_22215	PWY-5690	TCA cycle II (plants and fungi)
CKY39_22215	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_22215	PWY-6728	methylaspartate cycle
CKY39_22215	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_22215	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_22250	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_22250	PWY-5530	sorbitol biosynthesis II
CKY39_22250	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
CKY39_22345	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_22420	PWY-6167	flavin biosynthesis II (archaea)
CKY39_22420	PWY-6168	flavin biosynthesis III (fungi)
CKY39_22430	PWY-4202	arsenate detoxification I (glutaredoxin)
CKY39_22430	PWY-4621	arsenate detoxification II (glutaredoxin)
CKY39_22435	PWY-6700	queuosine biosynthesis
CKY39_22495	PWY-5101	L-isoleucine biosynthesis II
CKY39_22495	PWY-5103	L-isoleucine biosynthesis III
CKY39_22495	PWY-5104	L-isoleucine biosynthesis IV
CKY39_22495	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_22540	PWY-2781	<i>cis</i>-zeatin biosynthesis
CKY39_22735	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_22735	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKY39_22735	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CKY39_22735	PWY-6692	Fe(II) oxidation
CKY39_22810	PWY-1042	glycolysis IV (plant cytosol)
CKY39_22810	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_22810	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_22810	PWY-7003	glycerol degradation to butanol
CKY39_22900	PWY-6683	sulfate reduction III (assimilatory)
CKY39_22925	PWY-5194	siroheme biosynthesis
CKY39_22925	PWY-5196	factor 430 biosynthesis
CKY39_22925	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CKY39_23165	PWY-6936	seleno-amino acid biosynthesis
CKY39_23165	PWY-7274	D-cycloserine biosynthesis
CKY39_23165	PWY-7870	CKY39_23165
CKY39_23175	PWY-2301	<i>myo</i>-inositol biosynthesis
CKY39_23175	PWY-4702	phytate degradation I
CKY39_23175	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CKY39_23405	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CKY39_23645	PWY-6840	homoglutathione biosynthesis
CKY39_23645	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKY39_23800	PWY-4041	&gamma;-glutamyl cycle
CKY39_23800	PWY-7942	CKY39_23800
CKY39_23850	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CKY39_23855	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKY39_23855	PWY-7550	ergothioneine biosynthesis II (fungi)
CKY39_23860	PWY-7255	ergothioneine biosynthesis I (bacteria)
CKY39_23985	PWY-7352	daunorubicin biosynthesis
CKY39_23985	PWY-7354	aclacinomycin biosynthesis
CKY39_24035	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CKY39_24035	PWY-6174	mevalonate pathway II (archaea)
CKY39_24035	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CKY39_24035	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CKY39_24035	PWY-7102	bisabolene biosynthesis
CKY39_24035	PWY-7391	isoprene biosynthesis II (engineered)
CKY39_24035	PWY-7524	mevalonate pathway III (archaea)
CKY39_24035	PWY-7560	methylerythritol phosphate pathway II
CKY39_24035	PWY-922	mevalonate pathway I
CKY39_24100	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_24155	PWY-5101	L-isoleucine biosynthesis II
CKY39_24155	PWY-5103	L-isoleucine biosynthesis III
CKY39_24155	PWY-5104	L-isoleucine biosynthesis IV
CKY39_24155	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_24160	PWY-7130	L-glucose degradation
CKY39_24165	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_24165	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKY39_24165	PWY-7242	D-fructuronate degradation
CKY39_24165	PWY-7310	D-glucosaminate degradation
CKY39_24165	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CKY39_24225	PWY-2261	ascorbate glutathione cycle
CKY39_24225	PWY-4061	glutathione-mediated detoxification I
CKY39_24225	PWY-4202	arsenate detoxification I (glutaredoxin)
CKY39_24225	PWY-6370	ascorbate recycling (cytosolic)
CKY39_24225	PWY-6842	glutathione-mediated detoxification II
CKY39_24225	PWY-7112	4-hydroxy-2-nonenal detoxification
CKY39_24225	PWY-7533	gliotoxin biosynthesis
CKY39_24230	PWY-5386	methylglyoxal degradation I
CKY39_24240	PWY-7425	2-chloroacrylate degradation I
CKY39_24245	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_24245	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKY39_24245	PWY-7242	D-fructuronate degradation
CKY39_24245	PWY-7310	D-glucosaminate degradation
CKY39_24245	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CKY39_24250	PWY-5101	L-isoleucine biosynthesis II
CKY39_24250	PWY-5103	L-isoleucine biosynthesis III
CKY39_24250	PWY-5104	L-isoleucine biosynthesis IV
CKY39_24250	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CKY39_24260	PWY-7942	CKY39_24260
CKY39_24265	PWY-6854	ethylene biosynthesis III (microbes)
CKY39_24275	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKY39_24275	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKY39_24330	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CKY39_24335	PWY-6749	CMP-legionaminate biosynthesis I
CKY39_24505	PWY-6012	acyl carrier protein metabolism I
CKY39_24505	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKY39_24505	PWY-6289	petrobactin biosynthesis
CKY39_24615	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_24625	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKY39_24625	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKY39_24625	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKY39_24625	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKY39_24640	PWY-2161	folate polyglutamylation
CKY39_24655	PWY-5532	adenosine nucleotides degradation IV
CKY39_24655	PWY-7181	pyrimidine deoxyribonucleosides degradation
CKY39_24660	PWY-4983	L-citrulline-nitric oxide cycle
CKY39_24660	PWY-4984	urea cycle
CKY39_24660	PWY-5	canavanine biosynthesis
CKY39_24660	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_24660	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_24670	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_24670	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_24670	PWY-7953	CKY39_24670
CKY39_24710	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_24710	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_24750	PWY-1281	sulfoacetaldehyde degradation I
CKY39_24750	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKY39_24750	PWY-5482	pyruvate fermentation to acetate II
CKY39_24750	PWY-5485	pyruvate fermentation to acetate IV
CKY39_24750	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_24750	PWY-6637	sulfolactate degradation II
CKY39_24750	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_24755	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CKY39_24755	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CKY39_24935	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_25070	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_25070	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_25070	PWY-7717	CKY39_25070
CKY39_25070	PWY-7733	CKY39_25070
CKY39_25070	PWY-7734	CKY39_25070
CKY39_25070	PWY-7765	CKY39_25070
CKY39_25130	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_25130	PWY-5109	2-methylbutanoate biosynthesis
CKY39_25130	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_25130	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_25130	PWY-5177	glutaryl-CoA degradation
CKY39_25130	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_25130	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_25130	PWY-6583	pyruvate fermentation to butanol I
CKY39_25130	PWY-6863	pyruvate fermentation to hexanol
CKY39_25130	PWY-6883	pyruvate fermentation to butanol II
CKY39_25130	PWY-6944	androstenedione degradation
CKY39_25130	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_25130	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_25130	PWY-7007	methyl ketone biosynthesis
CKY39_25130	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_25130	PWY-7094	fatty acid salvage
CKY39_25130	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_25130	PWY-735	jasmonic acid biosynthesis
CKY39_25130	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_25130	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_25130	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_25130	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_25130	PWY-7726	CKY39_25130
CKY39_25130	PWY-7778	CKY39_25130
CKY39_25130	PWY-7779	CKY39_25130
CKY39_25135	PWY-5667	CDP-diacylglycerol biosynthesis I
CKY39_25135	PWY-5981	CDP-diacylglycerol biosynthesis III
CKY39_25135	PWY-7902	CKY39_25135
CKY39_25155	PWY-7158	L-phenylalanine degradation V
CKY39_25190	PWY-6829	tRNA methylation (yeast)
CKY39_25190	PWY-7285	methylwyosine biosynthesis
CKY39_25190	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CKY39_25350	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CKY39_25350	PWY-6148	tetrahydromethanopterin biosynthesis
CKY39_25350	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CKY39_25350	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CKY39_25350	PWY-7852	CKY39_25350
CKY39_25350	PWY-7853	CKY39_25350
CKY39_25365	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKY39_25365	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CKY39_25365	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CKY39_25440	PWY-4981	L-proline biosynthesis II (from arginine)
CKY39_25440	PWY-4984	urea cycle
CKY39_25440	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_25460	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_25460	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_25460	PWY-7717	CKY39_25460
CKY39_25460	PWY-7733	CKY39_25460
CKY39_25460	PWY-7734	CKY39_25460
CKY39_25460	PWY-7765	CKY39_25460
CKY39_25465	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CKY39_25465	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CKY39_25535	PWY-7094	fatty acid salvage
CKY39_25535	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_25570	PWY-5747	2-methylcitrate cycle II
CKY39_25590	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_25590	PWY-5392	reductive TCA cycle II
CKY39_25590	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKY39_25590	PWY-5690	TCA cycle II (plants and fungi)
CKY39_25590	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_25590	PWY-6728	methylaspartate cycle
CKY39_25590	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_25590	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_25590	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_25610	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_25610	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKY39_25610	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKY39_25610	PWY-5690	TCA cycle II (plants and fungi)
CKY39_25610	PWY-6728	methylaspartate cycle
CKY39_25610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_25610	PWY-7254	TCA cycle VII (acetate-producers)
CKY39_25610	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_25615	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_25615	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CKY39_25615	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CKY39_25615	PWY-5690	TCA cycle II (plants and fungi)
CKY39_25615	PWY-6728	methylaspartate cycle
CKY39_25615	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_25615	PWY-7254	TCA cycle VII (acetate-producers)
CKY39_25615	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_25645	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CKY39_25650	PWY-2941	L-lysine biosynthesis II
CKY39_25650	PWY-2942	L-lysine biosynthesis III
CKY39_25650	PWY-5097	L-lysine biosynthesis VI
CKY39_25650	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_25650	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CKY39_25650	PWY-6559	spermidine biosynthesis II
CKY39_25650	PWY-6562	norspermidine biosynthesis
CKY39_25650	PWY-7153	grixazone biosynthesis
CKY39_25650	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_25650	PWY-7977	CKY39_25650
CKY39_25680	PWY-4381	fatty acid biosynthesis initiation I
CKY39_25680	PWY-5743	3-hydroxypropanoate cycle
CKY39_25680	PWY-5744	glyoxylate assimilation
CKY39_25680	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_25680	PWY-6722	candicidin biosynthesis
CKY39_25735	PWY-6902	chitin degradation II
CKY39_25735	PWY-7822	CKY39_25735
CKY39_25735	PWY-7883	CKY39_25735
CKY39_25740	PWY-6012	acyl carrier protein metabolism I
CKY39_25740	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CKY39_25740	PWY-6289	petrobactin biosynthesis
CKY39_25825	PWY-4381	fatty acid biosynthesis initiation I
CKY39_25825	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CKY39_25825	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CKY39_25830	PWY-4381	fatty acid biosynthesis initiation I
CKY39_25910	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_25910	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKY39_25915	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_25915	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKY39_25920	PWY-1622	formaldehyde assimilation I (serine pathway)
CKY39_25920	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKY39_25920	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_25920	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_25920	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CKY39_25920	PWY-6549	L-glutamine biosynthesis III
CKY39_25920	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_25920	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_25920	PWY-7124	ethylene biosynthesis V (engineered)
CKY39_25995	PWY-4983	L-citrulline-nitric oxide cycle
CKY39_25995	PWY-4984	urea cycle
CKY39_25995	PWY-5	canavanine biosynthesis
CKY39_25995	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_25995	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_26120	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_26120	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_26120	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_26120	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_26145	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_26145	PWY-6549	L-glutamine biosynthesis III
CKY39_26145	PWY-6728	methylaspartate cycle
CKY39_26145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_26145	PWY-7124	ethylene biosynthesis V (engineered)
CKY39_26145	PWY-7254	TCA cycle VII (acetate-producers)
CKY39_26145	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKY39_26345	PWY-6700	queuosine biosynthesis
CKY39_26370	PWY-3801	sucrose degradation II (sucrose synthase)
CKY39_26370	PWY-6527	stachyose degradation
CKY39_26370	PWY-7238	sucrose biosynthesis II
CKY39_26370	PWY-7343	UDP-glucose biosynthesis
CKY39_26370	PWY-7817	CKY39_26370
CKY39_26385	PWY-6936	seleno-amino acid biosynthesis
CKY39_26520	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CKY39_26520	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CKY39_26535	PWY-6857	retinol biosynthesis
CKY39_26550	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CKY39_26550	PWY-6167	flavin biosynthesis II (archaea)
CKY39_26550	PWY-6168	flavin biosynthesis III (fungi)
CKY39_26550	PWY-7863	CKY39_26550
CKY39_26560	PWY-7884	CKY39_26560
CKY39_26795	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CKY39_26830	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_26830	PWY-4521	arsenite oxidation I (respiratory)
CKY39_26830	PWY-6692	Fe(II) oxidation
CKY39_26830	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_26880	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_27205	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CKY39_27325	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CKY39_27325	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CKY39_27325	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CKY39_27385	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CKY39_27425	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_27460	PWY-7942	CKY39_27460
CKY39_27465	PWY-4041	&gamma;-glutamyl cycle
CKY39_27465	PWY-7942	CKY39_27465
CKY39_27475	PWY-4041	&gamma;-glutamyl cycle
CKY39_27475	PWY-7942	CKY39_27475
CKY39_27605	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_27605	PWY-4521	arsenite oxidation I (respiratory)
CKY39_27605	PWY-6692	Fe(II) oxidation
CKY39_27605	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_27750	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_27850	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_27850	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CKY39_27850	PWY-7242	D-fructuronate degradation
CKY39_27850	PWY-7310	D-glucosaminate degradation
CKY39_27850	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CKY39_27895	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_27965	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_27965	PWY-2361	3-oxoadipate degradation
CKY39_27965	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CKY39_28115	PWY-6041	4-sulfocatechol degradation
CKY39_28120	PWY-6041	4-sulfocatechol degradation
CKY39_28245	PWY-5686	UMP biosynthesis
CKY39_28245	PWY-7790	CKY39_28245
CKY39_28245	PWY-7791	CKY39_28245
CKY39_28305	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_28310	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CKY39_28330	PWY-6123	inosine-5'-phosphate biosynthesis I
CKY39_28330	PWY-6124	inosine-5'-phosphate biosynthesis II
CKY39_28330	PWY-7234	inosine-5'-phosphate biosynthesis III
CKY39_28405	PWY-5963	thio-molybdenum cofactor biosynthesis
CKY39_28490	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
CKY39_28490	PWY-5644	4-nitrotoluene degradation II
CKY39_28490	PWY-5645	4-chloronitrobenzene degradation
CKY39_28490	PWY-5647	2-nitrobenzoate degradation I
CKY39_28490	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
CKY39_28490	PWY-6210	2-aminophenol degradation
CKY39_28490	PWY-6214	3-chlorocatechol degradation III (<i>meta</i> pathway)
CKY39_28490	PWY-6336	protocatechuate degradation III (<I>para</I>-cleavage pathway)
CKY39_28490	PWY-7006	4-amino-3-hydroxybenzoate degradation
CKY39_28490	PWY-7009	2,2'-dihydroxybiphenyl degradation
CKY39_28490	PWY-7480	2,3-dihydroxybenzoate degradation
CKY39_28495	PWY-5162	2-oxopentenoate degradation
CKY39_28500	PWY-5162	2-oxopentenoate degradation
CKY39_28500	PWY-5436	L-threonine degradation IV
CKY39_28500	PWY-5480	pyruvate fermentation to ethanol I
CKY39_28500	PWY-6587	pyruvate fermentation to ethanol III
CKY39_28500	PWY-7085	triethylamine degradation
CKY39_28500	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CKY39_28555	PWY-5418	phenol degradation I (aerobic)
CKY39_28555	PWY-6197	chlorinated phenols degradation
CKY39_28620	PWY-5392	reductive TCA cycle II
CKY39_28620	PWY-5537	pyruvate fermentation to acetate V
CKY39_28620	PWY-5538	pyruvate fermentation to acetate VI
CKY39_28620	PWY-5690	TCA cycle II (plants and fungi)
CKY39_28620	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_28620	PWY-6728	methylaspartate cycle
CKY39_28620	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_28620	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_28755	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CKY39_28785	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_28785	PWY-5109	2-methylbutanoate biosynthesis
CKY39_28785	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_28785	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_28785	PWY-5177	glutaryl-CoA degradation
CKY39_28785	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_28785	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_28785	PWY-6583	pyruvate fermentation to butanol I
CKY39_28785	PWY-6863	pyruvate fermentation to hexanol
CKY39_28785	PWY-6883	pyruvate fermentation to butanol II
CKY39_28785	PWY-6944	androstenedione degradation
CKY39_28785	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_28785	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_28785	PWY-7007	methyl ketone biosynthesis
CKY39_28785	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_28785	PWY-7094	fatty acid salvage
CKY39_28785	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_28785	PWY-735	jasmonic acid biosynthesis
CKY39_28785	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_28785	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_28785	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_28785	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_28785	PWY-7726	CKY39_28785
CKY39_28785	PWY-7778	CKY39_28785
CKY39_28785	PWY-7779	CKY39_28785
CKY39_28945	PWY-5392	reductive TCA cycle II
CKY39_28945	PWY-5537	pyruvate fermentation to acetate V
CKY39_28945	PWY-5538	pyruvate fermentation to acetate VI
CKY39_28945	PWY-5690	TCA cycle II (plants and fungi)
CKY39_28945	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_28945	PWY-6728	methylaspartate cycle
CKY39_28945	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_28945	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_29055	PWY-7883	CKY39_29055
CKY39_29100	PWY-2201	folate transformations I
CKY39_29100	PWY-3841	folate transformations II
CKY39_29110	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CKY39_29240	PWY-6683	sulfate reduction III (assimilatory)
CKY39_29330	PWY-4381	fatty acid biosynthesis initiation I
CKY39_29330	PWY-5743	3-hydroxypropanoate cycle
CKY39_29330	PWY-5744	glyoxylate assimilation
CKY39_29330	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_29330	PWY-6722	candicidin biosynthesis
CKY39_29360	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CKY39_29400	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKY39_29400	PWY-5743	3-hydroxypropanoate cycle
CKY39_29400	PWY-5744	glyoxylate assimilation
CKY39_29400	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_29400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_29400	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CKY39_29400	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_29515	PWY-6134	L-tyrosine biosynthesis IV
CKY39_29515	PWY-7158	L-phenylalanine degradation V
CKY39_29650	PWY-2201	folate transformations I
CKY39_29650	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_29650	PWY-7909	CKY39_29650
CKY39_29670	PWY-4381	fatty acid biosynthesis initiation I
CKY39_29670	PWY-5743	3-hydroxypropanoate cycle
CKY39_29670	PWY-5744	glyoxylate assimilation
CKY39_29670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_29670	PWY-6722	candicidin biosynthesis
CKY39_29690	PWY-5451	acetone degradation I (to methylglyoxal)
CKY39_29690	PWY-5665	vanillin biosynthesis I
CKY39_29690	PWY-6398	melatonin degradation I
CKY39_29690	PWY-6992	1,5-anhydrofructose degradation
CKY39_29690	PWY-7466	acetone degradation III (to propane-1,2-diol)
CKY39_29690	PWY-7826	CKY39_29690
CKY39_29725	PWY-31	canavanine degradation
CKY39_29725	PWY-4984	urea cycle
CKY39_29725	PWY-6305	putrescine biosynthesis IV
CKY39_29725	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CKY39_29785	PWY-2941	L-lysine biosynthesis II
CKY39_29785	PWY-2942	L-lysine biosynthesis III
CKY39_29785	PWY-5097	L-lysine biosynthesis VI
CKY39_29805	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_29965	PWY-7980	CKY39_29965
CKY39_29975	PWY-7980	CKY39_29975
CKY39_30015	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKY39_30015	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CKY39_30020	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKY39_30020	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CKY39_30050	PWY-7560	methylerythritol phosphate pathway II
CKY39_30070	PWY-7560	methylerythritol phosphate pathway II
CKY39_30075	PWY-5982	sulfoacetaldehyde degradation II
CKY39_30350	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_30350	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_30375	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CKY39_30375	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CKY39_30465	PWY-1361	benzoyl-CoA degradation I (aerobic)
CKY39_30465	PWY-5109	2-methylbutanoate biosynthesis
CKY39_30465	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CKY39_30465	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CKY39_30465	PWY-5177	glutaryl-CoA degradation
CKY39_30465	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CKY39_30465	PWY-6435	4-hydroxybenzoate biosynthesis V
CKY39_30465	PWY-6583	pyruvate fermentation to butanol I
CKY39_30465	PWY-6863	pyruvate fermentation to hexanol
CKY39_30465	PWY-6883	pyruvate fermentation to butanol II
CKY39_30465	PWY-6944	androstenedione degradation
CKY39_30465	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CKY39_30465	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CKY39_30465	PWY-7007	methyl ketone biosynthesis
CKY39_30465	PWY-7046	4-coumarate degradation (anaerobic)
CKY39_30465	PWY-7094	fatty acid salvage
CKY39_30465	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CKY39_30465	PWY-735	jasmonic acid biosynthesis
CKY39_30465	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CKY39_30465	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CKY39_30465	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CKY39_30465	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CKY39_30465	PWY-7726	CKY39_30465
CKY39_30465	PWY-7778	CKY39_30465
CKY39_30465	PWY-7779	CKY39_30465
CKY39_30480	PWY-3961	phosphopantothenate biosynthesis II
CKY39_30500	PWY-4261	glycerol degradation I
CKY39_30580	PWY-6654	phosphopantothenate biosynthesis III
CKY39_30615	PWY-6617	adenosine nucleotides degradation III
CKY39_30635	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CKY39_30635	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CKY39_30815	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_30815	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_30815	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_30815	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_30995	PWY-6854	ethylene biosynthesis III (microbes)
CKY39_31265	PWY-6855	chitin degradation I (archaea)
CKY39_31265	PWY-6902	chitin degradation II
CKY39_31265	PWY-7822	CKY39_31265
CKY39_31520	PWY-3341	L-proline biosynthesis III
CKY39_31520	PWY-4981	L-proline biosynthesis II (from arginine)
CKY39_31520	PWY-6344	L-ornithine degradation II (Stickland reaction)
CKY39_31715	PWY-4041	&gamma;-glutamyl cycle
CKY39_31715	PWY-7942	CKY39_31715
CKY39_31720	PWY-7942	CKY39_31720
CKY39_31760	PWY-7942	CKY39_31760
CKY39_31815	PWY-6700	queuosine biosynthesis
CKY39_31820	PWY-6700	queuosine biosynthesis
CKY39_31870	PWY-5686	UMP biosynthesis
CKY39_31870	PWY-7790	CKY39_31870
CKY39_31870	PWY-7791	CKY39_31870
CKY39_31905	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_31905	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_31950	PWY-6123	inosine-5'-phosphate biosynthesis I
CKY39_31950	PWY-6124	inosine-5'-phosphate biosynthesis II
CKY39_31950	PWY-7234	inosine-5'-phosphate biosynthesis III
CKY39_31955	PWY-1042	glycolysis IV (plant cytosol)
CKY39_31955	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CKY39_31955	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_31955	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_31955	PWY-7385	1,3-propanediol biosynthesis (engineered)
CKY39_31970	PWY-1042	glycolysis IV (plant cytosol)
CKY39_31970	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CKY39_31970	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_31970	PWY-5723	Rubisco shunt
CKY39_31970	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CKY39_31970	PWY-6886	1-butanol autotrophic biosynthesis
CKY39_31970	PWY-6901	superpathway of glucose and xylose degradation
CKY39_31970	PWY-7003	glycerol degradation to butanol
CKY39_31970	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CKY39_31970	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CKY39_31975	PWY-1042	glycolysis IV (plant cytosol)
CKY39_31975	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_31975	PWY-6886	1-butanol autotrophic biosynthesis
CKY39_31975	PWY-6901	superpathway of glucose and xylose degradation
CKY39_31975	PWY-7003	glycerol degradation to butanol
CKY39_32135	PWY-3781	aerobic respiration I (cytochrome c)
CKY39_32135	PWY-4521	arsenite oxidation I (respiratory)
CKY39_32135	PWY-6692	Fe(II) oxidation
CKY39_32135	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CKY39_32155	PWY-6167	flavin biosynthesis II (archaea)
CKY39_32240	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_32240	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_32240	PWY-7560	methylerythritol phosphate pathway II
CKY39_32385	PWY-6823	molybdenum cofactor biosynthesis
CKY39_32470	PWY-5392	reductive TCA cycle II
CKY39_32470	PWY-5537	pyruvate fermentation to acetate V
CKY39_32470	PWY-5538	pyruvate fermentation to acetate VI
CKY39_32470	PWY-5690	TCA cycle II (plants and fungi)
CKY39_32470	PWY-5913	TCA cycle VI (obligate autotrophs)
CKY39_32470	PWY-6728	methylaspartate cycle
CKY39_32470	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CKY39_32470	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CKY39_32480	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CKY39_32480	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CKY39_32555	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CKY39_32555	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CKY39_32770	PWY-1042	glycolysis IV (plant cytosol)
CKY39_32770	PWY-5484	glycolysis II (from fructose 6-phosphate)
CKY39_32770	PWY-6901	superpathway of glucose and xylose degradation
CKY39_32770	PWY-7003	glycerol degradation to butanol
CKY39_32775	PWY-6891	thiazole biosynthesis II (Bacillus)
CKY39_32775	PWY-6892	thiazole biosynthesis I (E. coli)
CKY39_32775	PWY-7560	methylerythritol phosphate pathway II
CKY39_32780	PWY-6834	spermidine biosynthesis III
CKY39_32825	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CKY39_32825	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CKY39_32825	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CKY39_32825	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CKY39_32875	PWY-1281	sulfoacetaldehyde degradation I
CKY39_32875	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CKY39_32875	PWY-5482	pyruvate fermentation to acetate II
CKY39_32875	PWY-5485	pyruvate fermentation to acetate IV
CKY39_32875	PWY-5497	purine nucleobases degradation II (anaerobic)
CKY39_32875	PWY-6637	sulfolactate degradation II
CKY39_32875	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CKY39_32960	PWY-5344	L-homocysteine biosynthesis
CKY39_32990	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CKY39_32990	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis