locus-tag class description Varpa_0001 PF08299 Bacterial dnaA protein helix-turn-helix Varpa_0001 PF00308 Bacterial dnaA protein Varpa_0001 PF11638 DnaA N-terminal domain Varpa_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Varpa_0002 PF02767 DNA polymerase III beta subunit, central domain Varpa_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Varpa_0003 PF18053 DNA gyrase B subunit insert domain Varpa_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Varpa_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0003 PF00204 DNA gyrase B Varpa_0003 PF01751 Toprim domain Varpa_0008 PF00149 Calcineurin-like phosphoesterase Varpa_0011 PF03706 Lysylphosphatidylglycerol synthase TM region Varpa_0012 PF13091 PLD-like domain Varpa_0013 PF03372 Endonuclease/Exonuclease/phosphatase family Varpa_0017 PF02678 Pirin Varpa_0017 PF05726 Pirin C-terminal cupin domain Varpa_0018 PF03055 Retinal pigment epithelial membrane protein Varpa_0019 PF00583 Acetyltransferase (GNAT) family Varpa_0020 PF00912 Transglycosylase Varpa_0024 PF06123 Inner membrane protein CreD Varpa_0025 PF00933 Glycosyl hydrolase family 3 N terminal domain Varpa_0026 PF17092 Penicillin-binding protein OB-like domain Varpa_0026 PF00905 Penicillin binding protein transpeptidase domain Varpa_0026 PF00912 Transglycosylase Varpa_0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0028 PF00672 HAMP domain Varpa_0028 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0029 PF00486 Transcriptional regulatory protein, C terminal Varpa_0029 PF00072 Response regulator receiver domain Varpa_0031 PF09278 MerR, DNA binding Varpa_0031 PF00376 MerR family regulatory protein Varpa_0032 PF00403 Heavy-metal-associated domain Varpa_0033 PF00403 Heavy-metal-associated domain Varpa_0034 PF00583 Acetyltransferase (GNAT) family Varpa_0035 PF04116 Fatty acid hydroxylase superfamily Varpa_0036 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_0036 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_0037 PF00550 Phosphopantetheine attachment site Varpa_0039 PF00072 Response regulator receiver domain Varpa_0039 PF00486 Transcriptional regulatory protein, C terminal Varpa_0040 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0041 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_0044 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Varpa_0046 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0047 PF02798 Glutathione S-transferase, N-terminal domain Varpa_0047 PF00043 Glutathione S-transferase, C-terminal domain Varpa_0050 PF01134 Glucose inhibited division protein A Varpa_0050 PF13932 GidA associated domain Varpa_0051 PF02527 rRNA small subunit methyltransferase G Varpa_0052 PF01810 LysE type translocator Varpa_0053 PF13614 AAA domain Varpa_0055 PF02195 ParB-like nuclease domain Varpa_0055 PF17762 HTH domain found in ParB protein Varpa_0057 PF01565 FAD binding domain Varpa_0057 PF02913 FAD linked oxidases, C-terminal domain Varpa_0059 PF01923 Cobalamin adenosyltransferase Varpa_0062 PF01638 HxlR-like helix-turn-helix Varpa_0066 PF03466 LysR substrate binding domain Varpa_0066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0073 PF03776 Septum formation topological specificity factor MinE Varpa_0074 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Varpa_0075 PF03775 Septum formation inhibitor MinC, C-terminal domain Varpa_0075 PF05209 Septum formation inhibitor MinC, N-terminal domain Varpa_0076 PF00860 Permease family Varpa_0077 PF03061 Thioesterase superfamily Varpa_0079 PF00664 ABC transporter transmembrane region Varpa_0079 PF00005 ABC transporter Varpa_0083 PF00368 Hydroxymethylglutaryl-coenzyme A reductase Varpa_0084 PF00155 Aminotransferase class I and II Varpa_0084 PF00392 Bacterial regulatory proteins, gntR family Varpa_0085 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0088 PF00501 AMP-binding enzyme Varpa_0088 PF13193 AMP-binding enzyme C-terminal domain Varpa_0089 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_0089 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_0091 PF05853 beta-keto acid cleavage enzyme Varpa_0093 PF01361 Tautomerase enzyme Varpa_0095 PF03466 LysR substrate binding domain Varpa_0095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0096 PF00005 ABC transporter Varpa_0097 PF00005 ABC transporter Varpa_0097 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0099 PF02653 Branched-chain amino acid transport system / permease component Varpa_0101 PF00561 alpha/beta hydrolase fold Varpa_0102 PF00501 AMP-binding enzyme Varpa_0102 PF13193 AMP-binding enzyme C-terminal domain Varpa_0105 PF01202 Shikimate kinase Varpa_0106 PF07715 TonB-dependent Receptor Plug Domain Varpa_0106 PF07660 Secretin and TonB N terminus short domain Varpa_0106 PF00593 TonB dependent receptor Varpa_0114 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_0114 PF13192 Thioredoxin domain Varpa_0116 PF04199 Putative cyclase Varpa_0117 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0118 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0119 PF00005 ABC transporter Varpa_0122 PF00501 AMP-binding enzyme Varpa_0122 PF13193 AMP-binding enzyme C-terminal domain Varpa_0124 PF00672 HAMP domain Varpa_0124 PF00211 Adenylate and Guanylate cyclase catalytic domain Varpa_0124 PF02743 Cache domain Varpa_0125 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA Varpa_0128 PF12833 Helix-turn-helix domain Varpa_0129 PF03466 LysR substrate binding domain Varpa_0129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0130 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0131 PF02515 CoA-transferase family III Varpa_0137 PF03167 Uracil DNA glycosylase superfamily Varpa_0140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0140 PF03466 LysR substrate binding domain Varpa_0141 PF00795 Carbon-nitrogen hydrolase Varpa_0145 PF04960 Glutaminase Varpa_0148 PF00893 Small Multidrug Resistance protein Varpa_0151 PF01613 Flavin reductase like domain Varpa_0152 PF03466 LysR substrate binding domain Varpa_0152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0153 PF00753 Metallo-beta-lactamase superfamily Varpa_0153 PF14863 Alkyl sulfatase dimerisation Varpa_0153 PF14864 Alkyl sulfatase C-terminal Varpa_0154 PF07670 Nucleoside recognition Varpa_0155 PF13091 PLD-like domain Varpa_0158 PF00005 ABC transporter Varpa_0159 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0159 PF00005 ABC transporter Varpa_0162 PF13458 Periplasmic binding protein Varpa_0163 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_0164 PF00120 Glutamine synthetase, catalytic domain Varpa_0165 PF00355 Rieske [2Fe-2S] domain Varpa_0167 PF00440 Bacterial regulatory proteins, tetR family Varpa_0170 PF03466 LysR substrate binding domain Varpa_0170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0172 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Varpa_0172 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Varpa_0174 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_0174 PF13291 ACT domain Varpa_0175 PF17862 AAA+ lid domain Varpa_0175 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_0175 PF06480 FtsH Extracellular Varpa_0175 PF01434 Peptidase family M41 Varpa_0177 PF01156 Inosine-uridine preferring nucleoside hydrolase Varpa_0178 PF00270 DEAD/DEAH box helicase Varpa_0178 PF00271 Helicase conserved C-terminal domain Varpa_0178 PF00570 HRDC domain Varpa_0178 PF16124 RecQ zinc-binding Varpa_0178 PF09382 RQC domain Varpa_0180 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0181 PF00005 ABC transporter Varpa_0182 PF07702 UTRA domain Varpa_0182 PF00392 Bacterial regulatory proteins, gntR family Varpa_0183 PF00221 Aromatic amino acid lyase Varpa_0184 PF17391 Urocanase N-terminal domain Varpa_0184 PF17392 Urocanase C-terminal domain Varpa_0184 PF01175 Urocanase Rossmann-like domain Varpa_0189 PF05962 HutD Varpa_0190 PF01979 Amidohydrolase family Varpa_0191 PF01979 Amidohydrolase family Varpa_0194 PF02965 Vitamin B12 dependent methionine synthase, activation domain Varpa_0194 PF00809 Pterin binding enzyme Varpa_0194 PF02310 B12 binding domain Varpa_0194 PF02607 B12 binding domain Varpa_0194 PF02574 Homocysteine S-methyltransferase Varpa_0196 PF03466 LysR substrate binding domain Varpa_0196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0199 PF00561 alpha/beta hydrolase fold Varpa_0200 PF02310 B12 binding domain Varpa_0200 PF02607 B12 binding domain Varpa_0200 PF02965 Vitamin B12 dependent methionine synthase, activation domain Varpa_0200 PF00809 Pterin binding enzyme Varpa_0200 PF02574 Homocysteine S-methyltransferase Varpa_0204 PF01979 Amidohydrolase family Varpa_0205 PF17938 Tetracyclin repressor-like, C-terminal domain Varpa_0205 PF00440 Bacterial regulatory proteins, tetR family Varpa_0206 PF00970 Oxidoreductase FAD-binding domain Varpa_0206 PF00175 Oxidoreductase NAD-binding domain Varpa_0207 PF00037 4Fe-4S binding domain Varpa_0211 PF13458 Periplasmic binding protein Varpa_0213 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0213 PF00005 ABC transporter Varpa_0214 PF00005 ABC transporter Varpa_0215 PF00857 Isochorismatase family Varpa_0217 PF01799 [2Fe-2S] binding domain Varpa_0217 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_0218 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_0218 PF00034 Cytochrome c Varpa_0218 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Varpa_0220 PF13335 Magnesium chelatase, subunit ChlI C-terminal Varpa_0220 PF01078 Magnesium chelatase, subunit ChlI Varpa_0222 PF00543 Nitrogen regulatory protein P-II Varpa_0223 PF00909 Ammonium Transporter Family Varpa_0224 PF08450 SMP-30/Gluconolactonase/LRE-like region Varpa_0225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0225 PF03466 LysR substrate binding domain Varpa_0226 PF02913 FAD linked oxidases, C-terminal domain Varpa_0226 PF01565 FAD binding domain Varpa_0227 PF01565 FAD binding domain Varpa_0228 PF02754 Cysteine-rich domain Varpa_0228 PF13183 4Fe-4S dicluster domain Varpa_0230 PF00255 Glutathione peroxidase Varpa_0232 PF07690 Major Facilitator Superfamily Varpa_0233 PF00842 Alanine racemase, C-terminal domain Varpa_0233 PF01168 Alanine racemase, N-terminal domain Varpa_0235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0235 PF03466 LysR substrate binding domain Varpa_0237 PF08546 Ketopantoate reductase PanE/ApbA C terminal Varpa_0237 PF02558 Ketopantoate reductase PanE/ApbA Varpa_0238 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_0239 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0241 PF03328 HpcH/HpaI aldolase/citrate lyase family Varpa_0242 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0246 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0247 PF00171 Aldehyde dehydrogenase family Varpa_0248 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0249 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0251 PF01047 MarR family Varpa_0252 PF18073 Rubredoxin metal binding domain Varpa_0255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0255 PF03466 LysR substrate binding domain Varpa_0256 PF07690 Major Facilitator Superfamily Varpa_0257 PF07687 Peptidase dimerisation domain Varpa_0257 PF01546 Peptidase family M20/M25/M40 Varpa_0258 PF04381 Putative exonuclease, RdgC Varpa_0259 PF01063 Amino-transferase class IV Varpa_0264 PF00672 HAMP domain Varpa_0264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0264 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0265 PF00486 Transcriptional regulatory protein, C terminal Varpa_0265 PF00072 Response regulator receiver domain Varpa_0266 PF01494 FAD binding domain Varpa_0268 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_0268 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_0269 PF07690 Major Facilitator Superfamily Varpa_0271 PF01425 Amidase Varpa_0272 PF09084 NMT1/THI5 like Varpa_0273 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0274 PF00005 ABC transporter Varpa_0276 PF02608 ABC transporter substrate-binding protein PnrA-like Varpa_0279 PF00795 Carbon-nitrogen hydrolase Varpa_0280 PF00857 Isochorismatase family Varpa_0282 PF00857 Isochorismatase family Varpa_0283 PF07729 FCD domain Varpa_0283 PF00392 Bacterial regulatory proteins, gntR family Varpa_0284 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0285 PF01494 FAD binding domain Varpa_0286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0286 PF03466 LysR substrate binding domain Varpa_0287 PF03372 Endonuclease/Exonuclease/phosphatase family Varpa_0288 PF00156 Phosphoribosyl transferase domain Varpa_0290 PF02934 GatB/GatE catalytic domain Varpa_0290 PF02637 GatB domain Varpa_0291 PF01425 Amidase Varpa_0292 PF02686 Glu-tRNAGln amidotransferase C subunit Varpa_0296 PF03717 Penicillin-binding Protein dimerisation domain Varpa_0296 PF00905 Penicillin binding protein transpeptidase domain Varpa_0297 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0298 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0299 PF04209 homogentisate 1,2-dioxygenase Varpa_0301 PF01494 FAD binding domain Varpa_0302 PF00753 Metallo-beta-lactamase superfamily Varpa_0304 PF02146 Sir2 family Varpa_0309 PF09383 NIL domain Varpa_0309 PF00005 ABC transporter Varpa_0310 PF02405 Permease MlaE Varpa_0311 PF03466 LysR substrate binding domain Varpa_0311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0312 PF00171 Aldehyde dehydrogenase family Varpa_0314 PF00732 GMC oxidoreductase Varpa_0314 PF05199 GMC oxidoreductase Varpa_0317 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_0317 PF04324 BFD-like [2Fe-2S] binding domain Varpa_0319 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0320 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0321 PF08402 TOBE domain Varpa_0321 PF00005 ABC transporter Varpa_0324 PF00171 Aldehyde dehydrogenase family Varpa_0327 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_0327 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_0327 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_0329 PF01546 Peptidase family M20/M25/M40 Varpa_0329 PF07687 Peptidase dimerisation domain Varpa_0330 PF03009 Glycerophosphoryl diester phosphodiesterase family Varpa_0331 PF07687 Peptidase dimerisation domain Varpa_0331 PF01546 Peptidase family M20/M25/M40 Varpa_0332 PF04286 Protein of unknown function (DUF445) Varpa_0334 PF00563 EAL domain Varpa_0334 PF03707 Bacterial signalling protein N terminal repeat Varpa_0334 PF00990 Diguanylate cyclase, GGDEF domain Varpa_0335 PF01039 Carboxyl transferase domain Varpa_0336 PF02785 Biotin carboxylase C-terminal domain Varpa_0336 PF00289 Biotin carboxylase, N-terminal domain Varpa_0336 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_0336 PF00364 Biotin-requiring enzyme Varpa_0338 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0338 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0338 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0339 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0339 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0339 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0341 PF00270 DEAD/DEAH box helicase Varpa_0341 PF00271 Helicase conserved C-terminal domain Varpa_0342 PF01253 Translation initiation factor SUI1 Varpa_0344 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Varpa_0345 PF07331 Tripartite tricarboxylate transporter TctB family Varpa_0346 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_0347 PF00909 Ammonium Transporter Family Varpa_0350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_0350 PF00384 Molybdopterin oxidoreductase Varpa_0350 PF01568 Molydopterin dinucleotide binding domain Varpa_0354 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_0354 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Varpa_0355 PF00107 Zinc-binding dehydrogenase Varpa_0355 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_0356 PF02653 Branched-chain amino acid transport system / permease component Varpa_0357 PF00005 ABC transporter Varpa_0358 PF13407 Periplasmic binding protein domain Varpa_0359 PF02311 AraC-like ligand binding domain Varpa_0359 PF12833 Helix-turn-helix domain Varpa_0360 PF02515 CoA-transferase family III Varpa_0367 PF03466 LysR substrate binding domain Varpa_0367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0368 PF07883 Cupin domain Varpa_0369 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0370 PF01494 FAD binding domain Varpa_0371 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0372 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0373 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_0376 PF13417 Glutathione S-transferase, N-terminal domain Varpa_0376 PF00043 Glutathione S-transferase, C-terminal domain Varpa_0377 PF01548 Transposase Varpa_0377 PF02371 Transposase IS116/IS110/IS902 family Varpa_0379 PF00916 Sulfate permease family Varpa_0379 PF01740 STAS domain Varpa_0381 PF00005 ABC transporter Varpa_0382 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0382 PF00005 ABC transporter Varpa_0383 PF02653 Branched-chain amino acid transport system / permease component Varpa_0383 PF11862 Domain of unknown function (DUF3382) Varpa_0384 PF02653 Branched-chain amino acid transport system / permease component Varpa_0386 PF00137 ATP synthase subunit C Varpa_0388 PF01791 DeoC/LacD family aldolase Varpa_0389 PF00248 Aldo/keto reductase family Varpa_0390 PF02653 Branched-chain amino acid transport system / permease component Varpa_0391 PF00005 ABC transporter Varpa_0393 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Varpa_0393 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_0394 PF01266 FAD dependent oxidoreductase Varpa_0394 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Varpa_0397 PF17755 UvrA DNA-binding domain Varpa_0397 PF17760 UvrA interaction domain Varpa_0398 PF00436 Single-strand binding protein family Varpa_0399 PF17200 Single Cache domain 2 Varpa_0399 PF07730 Histidine kinase Varpa_0401 PF01709 Transcriptional regulator Varpa_0402 PF02548 Ketopantoate hydroxymethyltransferase Varpa_0403 PF00005 ABC transporter Varpa_0405 PF02632 BioY family Varpa_0412 PF00296 Luciferase-like monooxygenase Varpa_0416 PF00072 Response regulator receiver domain Varpa_0416 PF00486 Transcriptional regulatory protein, C terminal Varpa_0417 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Varpa_0417 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Varpa_0418 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Varpa_0419 PF02233 NAD(P) transhydrogenase beta subunit Varpa_0420 PF00501 AMP-binding enzyme Varpa_0420 PF13193 AMP-binding enzyme C-terminal domain Varpa_0421 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0422 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_0422 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0423 PF00005 ABC transporter Varpa_0423 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_0424 PF00005 ABC transporter Varpa_0424 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_0425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_0426 PF01048 Phosphorylase superfamily Varpa_0428 PF01544 CorA-like Mg2+ transporter protein Varpa_0429 PF13361 UvrD-like helicase C-terminal domain Varpa_0429 PF00580 UvrD/REP helicase N-terminal domain Varpa_0430 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Varpa_0431 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Varpa_0432 PF07475 HPr Serine kinase C-terminal domain Varpa_0432 PF02603 HPr Serine kinase N terminus Varpa_0433 PF01475 Ferric uptake regulator family Varpa_0434 PF04355 SmpA / OmlA family Varpa_0436 PF01618 MotA/TolQ/ExbB proton channel family Varpa_0437 PF02472 Biopolymer transport protein ExbD/TolR Varpa_0438 PF00343 Carbohydrate phosphorylase Varpa_0439 PF00534 Glycosyl transferases group 1 Varpa_0439 PF08323 Starch synthase catalytic domain Varpa_0440 PF00483 Nucleotidyl transferase Varpa_0441 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Varpa_0441 PF00128 Alpha amylase, catalytic domain Varpa_0441 PF18390 Glycogen debranching enzyme C-terminal domain Varpa_0443 PF02806 Alpha amylase, C-terminal all-beta domain Varpa_0443 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Varpa_0443 PF00128 Alpha amylase, catalytic domain Varpa_0444 PF00128 Alpha amylase, catalytic domain Varpa_0445 PF13454 FAD-NAD(P)-binding Varpa_0446 PF08264 Anticodon-binding domain of tRNA Varpa_0446 PF00133 tRNA synthetases class I (I, L, M and V) Varpa_0446 PF13603 Leucyl-tRNA synthetase, Domain 2 Varpa_0446 PF09334 tRNA synthetases class I (M) Varpa_0449 PF00171 Aldehyde dehydrogenase family Varpa_0451 PF02705 K+ potassium transporter Varpa_0454 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Varpa_0454 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Varpa_0456 PF00593 TonB dependent receptor Varpa_0456 PF07715 TonB-dependent Receptor Plug Domain Varpa_0457 PF13230 Glutamine amidotransferases class-II Varpa_0459 PF07690 Major Facilitator Superfamily Varpa_0460 PF15887 Putative zinc-binding metallo-peptidase Varpa_0460 PF10005 zinc-ribbon domain Varpa_0462 PF00365 Phosphofructokinase Varpa_0463 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0465 PF03466 LysR substrate binding domain Varpa_0466 PF02469 Fasciclin domain Varpa_0469 PF06250 YhcG PDDEXK nuclease domain Varpa_0469 PF17761 DUF1016 N-terminal domain Varpa_0471 PF01274 Malate synthase Varpa_0474 PF00682 HMGL-like Varpa_0475 PF02515 CoA-transferase family III Varpa_0476 PF03466 LysR substrate binding domain Varpa_0476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0479 PF05746 DALR anticodon binding domain Varpa_0479 PF00750 tRNA synthetases class I (R) Varpa_0479 PF03485 Arginyl tRNA synthetase N terminal domain Varpa_0481 PF01323 DSBA-like thioredoxin domain Varpa_0481 PF00085 Thioredoxin Varpa_0482 PF03968 OstA-like protein Varpa_0483 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0483 PF00005 ABC transporter Varpa_0484 PF04552 Sigma-54, DNA binding domain Varpa_0484 PF04963 Sigma-54 factor, core binding domain Varpa_0484 PF00309 Sigma-54 factor, Activator interacting domain (AID) Varpa_0485 PF13091 PLD-like domain Varpa_0489 PF01292 Prokaryotic cytochrome b561 Varpa_0490 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0491 PF01170 Putative RNA methylase family UPF0020 Varpa_0491 PF02926 THUMP domain Varpa_0494 PF12833 Helix-turn-helix domain Varpa_0501 PF03958 Bacterial type II/III secretion system short domain Varpa_0501 PF00263 Bacterial type II and III secretion system protein Varpa_0501 PF07660 Secretin and TonB N terminus short domain Varpa_0501 PF11741 AMIN domain Varpa_0502 PF00437 Type II/IV secretion system protein Varpa_0509 PF01645 Conserved region in glutamate synthase Varpa_0510 PF03695 Uncharacterised protein family (UPF0149) Varpa_0510 PF02810 SEC-C motif Varpa_0516 PF02464 Competence-damaged protein Varpa_0518 PF07690 Major Facilitator Superfamily Varpa_0519 PF01494 FAD binding domain Varpa_0520 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0521 PF03466 LysR substrate binding domain Varpa_0523 PF02769 AIR synthase related protein, C-terminal domain Varpa_0523 PF00586 AIR synthase related protein, N-terminal domain Varpa_0524 PF04107 Glutamate-cysteine ligase family 2(GCS2) Varpa_0527 PF04379 ApaG domain Varpa_0528 PF00834 Ribulose-phosphate 3 epimerase family Varpa_0531 PF02735 Ku70/Ku80 beta-barrel domain Varpa_0532 PF13298 DNA polymerase Ligase (LigD) Varpa_0532 PF04679 ATP dependent DNA ligase C terminal region Varpa_0532 PF01068 ATP dependent DNA ligase domain Varpa_0535 PF18011 C-terminal domain found in long catalases Varpa_0535 PF06628 Catalase-related immune-responsive Varpa_0535 PF00199 Catalase Varpa_0537 PF13091 PLD-like domain Varpa_0537 PF13396 Phospholipase_D-nuclease N-terminal Varpa_0538 PF16671 Actin cross-linking domain Varpa_0538 PF04717 Type VI secretion system, phage-baseplate injector Varpa_0541 PF05860 haemagglutination activity domain Varpa_0544 PF00857 Isochorismatase family Varpa_0545 PF01965 DJ-1/PfpI family Varpa_0545 PF12833 Helix-turn-helix domain Varpa_0546 PF00672 HAMP domain Varpa_0546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0546 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0546 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Varpa_0546 PF08448 PAS fold Varpa_0548 PF01627 Hpt domain Varpa_0548 PF00072 Response regulator receiver domain Varpa_0548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0548 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0548 PF00672 HAMP domain Varpa_0552 PF00691 OmpA family Varpa_0552 PF13677 Membrane MotB of proton-channel complex MotA/MotB Varpa_0556 PF00069 Protein kinase domain Varpa_0567 PF17871 AAA lid domain Varpa_0567 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_0567 PF07724 AAA domain (Cdc48 subfamily) Varpa_0567 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_0568 PF04717 Type VI secretion system, phage-baseplate injector Varpa_0573 PF04717 Type VI secretion system, phage-baseplate injector Varpa_0584 PF05638 Type VI secretion system effector, Hcp Varpa_0591 PF00196 Bacterial regulatory proteins, luxR family Varpa_0591 PF00072 Response regulator receiver domain Varpa_0594 PF02769 AIR synthase related protein, C-terminal domain Varpa_0594 PF00586 AIR synthase related protein, N-terminal domain Varpa_0597 PF00795 Carbon-nitrogen hydrolase Varpa_0599 PF00155 Aminotransferase class I and II Varpa_0599 PF00392 Bacterial regulatory proteins, gntR family Varpa_0601 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0602 PF00072 Response regulator receiver domain Varpa_0602 PF00486 Transcriptional regulatory protein, C terminal Varpa_0603 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0603 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0603 PF00989 PAS fold Varpa_0603 PF11808 Phosphate regulon sensor protein PhoR Varpa_0604 PF01037 Lrp/AsnC ligand binding domain Varpa_0605 PF00202 Aminotransferase class-III Varpa_0606 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_0609 PF01266 FAD dependent oxidoreductase Varpa_0610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_0611 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0612 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_0612 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0613 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_0613 PF00005 ABC transporter Varpa_0614 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_0615 PF00171 Aldehyde dehydrogenase family Varpa_0617 PF00171 Aldehyde dehydrogenase family Varpa_0618 PF01266 FAD dependent oxidoreductase Varpa_0619 PF00583 Acetyltransferase (GNAT) family Varpa_0620 PF01266 FAD dependent oxidoreductase Varpa_0621 PF07715 TonB-dependent Receptor Plug Domain Varpa_0621 PF00593 TonB dependent receptor Varpa_0624 PF00202 Aminotransferase class-III Varpa_0625 PF01037 Lrp/AsnC ligand binding domain Varpa_0626 PF13419 Haloacid dehalogenase-like hydrolase Varpa_0628 PF00425 chorismate binding enzyme Varpa_0628 PF04715 Anthranilate synthase component I, N terminal region Varpa_0630 PF00117 Glutamine amidotransferase class-I Varpa_0631 PF01212 Beta-eliminating lyase Varpa_0632 PF01810 LysE type translocator Varpa_0633 PF00591 Glycosyl transferase family, a/b domain Varpa_0633 PF02885 Glycosyl transferase family, helical bundle domain Varpa_0634 PF00218 Indole-3-glycerol phosphate synthase Varpa_0635 PF03167 Uracil DNA glycosylase superfamily Varpa_0636 PF03144 Elongation factor Tu domain 2 Varpa_0636 PF00009 Elongation factor Tu GTP binding domain Varpa_0636 PF03143 Elongation factor Tu C-terminal domain Varpa_0638 PF00467 KOW motif Varpa_0638 PF02357 Transcription termination factor nusG Varpa_0639 PF03946 Ribosomal protein L11, N-terminal domain Varpa_0639 PF00298 Ribosomal protein L11, RNA binding domain Varpa_0640 PF00687 Ribosomal protein L1p/L10e family Varpa_0641 PF00466 Ribosomal protein L10 Varpa_0642 PF00542 Ribosomal protein L7/L12 C-terminal domain Varpa_0642 PF16320 Ribosomal protein L7/L12 dimerisation domain Varpa_0643 PF04560 RNA polymerase Rpb2, domain 7 Varpa_0643 PF00562 RNA polymerase Rpb2, domain 6 Varpa_0643 PF10385 RNA polymerase beta subunit external 1 domain Varpa_0643 PF04563 RNA polymerase beta subunit Varpa_0643 PF04565 RNA polymerase Rpb2, domain 3 Varpa_0643 PF04561 RNA polymerase Rpb2, domain 2 Varpa_0644 PF04983 RNA polymerase Rpb1, domain 3 Varpa_0644 PF04998 RNA polymerase Rpb1, domain 5 Varpa_0644 PF05000 RNA polymerase Rpb1, domain 4 Varpa_0644 PF04997 RNA polymerase Rpb1, domain 1 Varpa_0644 PF00623 RNA polymerase Rpb1, domain 2 Varpa_0646 PF01189 16S rRNA methyltransferase RsmB/F Varpa_0646 PF01029 NusB family Varpa_0648 PF00989 PAS fold Varpa_0648 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0648 PF00672 HAMP domain Varpa_0649 PF02954 Bacterial regulatory protein, Fis family Varpa_0649 PF00072 Response regulator receiver domain Varpa_0649 PF00158 Sigma-54 interaction domain Varpa_0653 PF02463 RecF/RecN/SMC N terminal domain Varpa_0672 PF00589 Phage integrase family Varpa_0672 PF14659 Phage integrase, N-terminal SAM-like domain Varpa_0672 PF13356 Arm DNA-binding domain Varpa_0679 PF01339 CheB methylesterase Varpa_0679 PF01739 CheR methyltransferase, SAM binding domain Varpa_0679 PF03705 CheR methyltransferase, all-alpha domain Varpa_0679 PF08448 PAS fold Varpa_0686 PF02585 GlcNAc-PI de-N-acetylase Varpa_0686 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Varpa_0690 PF03167 Uracil DNA glycosylase superfamily Varpa_0698 PF01470 Pyroglutamyl peptidase Varpa_0699 PF03746 LamB/YcsF family Varpa_0700 PF02682 Carboxyltransferase domain, subdomain C and D Varpa_0701 PF02785 Biotin carboxylase C-terminal domain Varpa_0701 PF00289 Biotin carboxylase, N-terminal domain Varpa_0701 PF00364 Biotin-requiring enzyme Varpa_0701 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_0702 PF00561 alpha/beta hydrolase fold Varpa_0705 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_0707 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Varpa_0707 PF13360 PQQ-like domain Varpa_0708 PF08042 PqqA family Varpa_0709 PF12706 Beta-lactamase superfamily domain Varpa_0710 PF03070 TENA/THI-4/PQQC family Varpa_0711 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Varpa_0712 PF13186 Iron-sulfur cluster-binding domain Varpa_0712 PF04055 Radical SAM superfamily Varpa_0713 PF00561 alpha/beta hydrolase fold Varpa_0715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_0716 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Varpa_0717 PF01220 Dehydroquinase class II Varpa_0718 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_0719 PF01614 Bacterial transcriptional regulator Varpa_0719 PF09339 IclR helix-turn-helix domain Varpa_0720 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_0721 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0722 PF12833 Helix-turn-helix domain Varpa_0725 PF17991 Thioredoxin like C-terminal domain Varpa_0725 PF00578 AhpC/TSA family Varpa_0725 PF02683 Cytochrome C biogenesis protein transmembrane region Varpa_0726 PF00486 Transcriptional regulatory protein, C terminal Varpa_0726 PF00072 Response regulator receiver domain Varpa_0727 PF02566 OsmC-like protein Varpa_0728 PF00672 HAMP domain Varpa_0728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0728 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0729 PF00578 AhpC/TSA family Varpa_0729 PF02683 Cytochrome C biogenesis protein transmembrane region Varpa_0729 PF17991 Thioredoxin like C-terminal domain Varpa_0732 PF00375 Sodium:dicarboxylate symporter family Varpa_0733 PF02803 Thiolase, C-terminal domain Varpa_0733 PF00108 Thiolase, N-terminal domain Varpa_0734 PF00106 short chain dehydrogenase Varpa_0735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0735 PF00512 His Kinase A (phospho-acceptor) domain Varpa_0735 PF02743 Cache domain Varpa_0736 PF00072 Response regulator receiver domain Varpa_0736 PF00158 Sigma-54 interaction domain Varpa_0736 PF02954 Bacterial regulatory protein, Fis family Varpa_0737 PF02540 NAD synthase Varpa_0738 PF02253 Phospholipase A1 Varpa_0740 PF13361 UvrD-like helicase C-terminal domain Varpa_0740 PF00580 UvrD/REP helicase N-terminal domain Varpa_0741 PF03547 Membrane transport protein Varpa_0745 PF18074 Primosomal protein N C-terminal domain Varpa_0745 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Varpa_0745 PF17764 3′ DNA-binding domain (3′BD) Varpa_0745 PF00271 Helicase conserved C-terminal domain Varpa_0745 PF00270 DEAD/DEAH box helicase Varpa_0746 PF01208 Uroporphyrinogen decarboxylase (URO-D) Varpa_0747 PF07690 Major Facilitator Superfamily Varpa_0748 PF00578 AhpC/TSA family Varpa_0749 PF02683 Cytochrome C biogenesis protein transmembrane region Varpa_0749 PF11412 Disulphide bond corrector protein DsbC Varpa_0749 PF13098 Thioredoxin-like domain Varpa_0750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Varpa_0750 PF01411 tRNA synthetases class II (A) Varpa_0750 PF02272 DHHA1 domain Varpa_0751 PF07995 Glucose / Sorbosone dehydrogenase Varpa_0752 PF13302 Acetyltransferase (GNAT) domain Varpa_0754 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_0754 PF00107 Zinc-binding dehydrogenase Varpa_0755 PF03466 LysR substrate binding domain Varpa_0755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0756 PF00106 short chain dehydrogenase Varpa_0757 PF02633 Creatinine amidohydrolase Varpa_0758 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_0759 PF01810 LysE type translocator Varpa_0761 PF02567 Phenazine biosynthesis-like protein Varpa_0762 PF00043 Glutathione S-transferase, C-terminal domain Varpa_0762 PF13417 Glutathione S-transferase, N-terminal domain Varpa_0763 PF01810 LysE type translocator Varpa_0764 PF00155 Aminotransferase class I and II Varpa_0765 PF00892 EamA-like transporter family Varpa_0767 PF00155 Aminotransferase class I and II Varpa_0770 PF01266 FAD dependent oxidoreductase Varpa_0771 PF16363 GDP-mannose 4,6 dehydratase Varpa_0772 PF04321 RmlD substrate binding domain Varpa_0773 PF00483 Nucleotidyl transferase Varpa_0774 PF01370 NAD dependent epimerase/dehydratase family Varpa_0775 PF00483 Nucleotidyl transferase Varpa_0777 PF13439 Glycosyltransferase Family 4 Varpa_0777 PF00534 Glycosyl transferases group 1 Varpa_0778 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Varpa_0779 PF16363 GDP-mannose 4,6 dehydratase Varpa_0780 PF00535 Glycosyl transferase family 2 Varpa_0781 PF00535 Glycosyl transferase family 2 Varpa_0781 PF00534 Glycosyl transferases group 1 Varpa_0785 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Varpa_0786 PF00535 Glycosyl transferase family 2 Varpa_0787 PF00534 Glycosyl transferases group 1 Varpa_0787 PF13439 Glycosyltransferase Family 4 Varpa_0788 PF01757 Acyltransferase family Varpa_0791 PF00005 ABC transporter Varpa_0792 PF01061 ABC-2 type transporter Varpa_0794 PF00535 Glycosyl transferase family 2 Varpa_0795 PF01757 Acyltransferase family Varpa_0797 PF00953 Glycosyl transferase family 4 Varpa_0798 PF00696 Amino acid kinase family Varpa_0799 PF00440 Bacterial regulatory proteins, tetR family Varpa_0800 PF02615 Malate/L-lactate dehydrogenase Varpa_0802 PF02653 Branched-chain amino acid transport system / permease component Varpa_0803 PF02653 Branched-chain amino acid transport system / permease component Varpa_0804 PF00005 ABC transporter Varpa_0805 PF13407 Periplasmic binding protein domain Varpa_0806 PF08666 SAF domain Varpa_0806 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Varpa_0807 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_0809 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_0810 PF00392 Bacterial regulatory proteins, gntR family Varpa_0810 PF07729 FCD domain Varpa_0813 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_0815 PF07702 UTRA domain Varpa_0815 PF00392 Bacterial regulatory proteins, gntR family Varpa_0816 PF13458 Periplasmic binding protein Varpa_0817 PF02653 Branched-chain amino acid transport system / permease component Varpa_0818 PF02653 Branched-chain amino acid transport system / permease component Varpa_0818 PF11862 Domain of unknown function (DUF3382) Varpa_0819 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_0819 PF00005 ABC transporter Varpa_0820 PF00005 ABC transporter Varpa_0821 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0822 PF00330 Aconitase family (aconitate hydratase) Varpa_0823 PF00694 Aconitase C-terminal domain Varpa_0824 PF02538 Hydantoinase B/oxoprolinase Varpa_0825 PF05378 Hydantoinase/oxoprolinase N-terminal region Varpa_0825 PF01968 Hydantoinase/oxoprolinase Varpa_0827 PF00890 FAD binding domain Varpa_0829 PF03466 LysR substrate binding domain Varpa_0829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0830 PF00106 short chain dehydrogenase Varpa_0831 PF07715 TonB-dependent Receptor Plug Domain Varpa_0831 PF00593 TonB dependent receptor Varpa_0835 PF12806 Acetyl-CoA dehydrogenase C-terminal like Varpa_0835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0835 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0837 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_0837 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0837 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_0838 PF04480 Protein of unknown function (DUF559) Varpa_0839 PF00108 Thiolase, N-terminal domain Varpa_0839 PF02803 Thiolase, C-terminal domain Varpa_0842 PF00106 short chain dehydrogenase Varpa_0843 PF01323 DSBA-like thioredoxin domain Varpa_0844 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0845 PF13458 Periplasmic binding protein Varpa_0846 PF03061 Thioesterase superfamily Varpa_0847 PF00664 ABC transporter transmembrane region Varpa_0847 PF00005 ABC transporter Varpa_0848 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_0848 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_0849 PF01425 Amidase Varpa_0850 PF03466 LysR substrate binding domain Varpa_0850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0851 PF10415 Fumarase C C-terminus Varpa_0851 PF00206 Lyase Varpa_0852 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_0853 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0854 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0855 PF00005 ABC transporter Varpa_0856 PF01156 Inosine-uridine preferring nucleoside hydrolase Varpa_0857 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_0858 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_0859 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Varpa_0860 PF03466 LysR substrate binding domain Varpa_0860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0861 PF00248 Aldo/keto reductase family Varpa_0862 PF07690 Major Facilitator Superfamily Varpa_0865 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Varpa_0867 PF01272 Transcription elongation factor, GreA/GreB, C-term Varpa_0867 PF03449 Transcription elongation factor, N-terminal Varpa_0869 PF03060 Nitronate monooxygenase Varpa_0870 PF00766 Electron transfer flavoprotein FAD-binding domain Varpa_0870 PF01012 Electron transfer flavoprotein domain Varpa_0871 PF01012 Electron transfer flavoprotein domain Varpa_0872 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0873 PF13193 AMP-binding enzyme C-terminal domain Varpa_0873 PF00501 AMP-binding enzyme Varpa_0874 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0875 PF02515 CoA-transferase family III Varpa_0876 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0877 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0877 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0877 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0878 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_0878 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_0878 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_0879 PF02803 Thiolase, C-terminal domain Varpa_0879 PF00108 Thiolase, N-terminal domain Varpa_0880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_0880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_0880 PF00378 Enoyl-CoA hydratase/isomerase Varpa_0881 PF03466 LysR substrate binding domain Varpa_0881 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0883 PF01161 Phosphatidylethanolamine-binding protein Varpa_0886 PF03167 Uracil DNA glycosylase superfamily Varpa_0887 PF04115 Ureidoglycolate lyase Varpa_0889 PF01425 Amidase Varpa_0890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_0890 PF00005 ABC transporter Varpa_0891 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_0891 PF00005 ABC transporter Varpa_0892 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_0892 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_0894 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_0896 PF01979 Amidohydrolase family Varpa_0900 PF01435 Peptidase family M48 Varpa_0902 PF01613 Flavin reductase like domain Varpa_0905 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_0906 PF03595 Voltage-dependent anion channel Varpa_0908 PF01047 MarR family Varpa_0909 PF04632 Fusaric acid resistance protein family Varpa_0910 PF07869 Protein of unknown function (DUF1656) Varpa_0911 PF13533 Biotin-lipoyl like Varpa_0912 PF02321 Outer membrane efflux protein Varpa_0913 PF07690 Major Facilitator Superfamily Varpa_0915 PF00849 RNA pseudouridylate synthase Varpa_0915 PF01479 S4 domain Varpa_0917 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0920 PF01979 Amidohydrolase family Varpa_0928 PF03466 LysR substrate binding domain Varpa_0928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0929 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_0930 PF02426 Muconolactone delta-isomerase Varpa_0931 PF00857 Isochorismatase family Varpa_0932 PF12833 Helix-turn-helix domain Varpa_0932 PF12852 Cupin Varpa_0935 PF12833 Helix-turn-helix domain Varpa_0935 PF12852 Cupin Varpa_0939 PF12833 Helix-turn-helix domain Varpa_0939 PF12852 Cupin Varpa_0941 PF00248 Aldo/keto reductase family Varpa_0942 PF07690 Major Facilitator Superfamily Varpa_0949 PF08281 Sigma-70, region 4 Varpa_0949 PF04542 Sigma-70 region 2 Varpa_0953 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_0953 PF03466 LysR substrate binding domain Varpa_0954 PF00857 Isochorismatase family Varpa_0956 PF01979 Amidohydrolase family Varpa_0956 PF13382 Adenine deaminase C-terminal domain Varpa_0957 PF07681 DoxX Varpa_0958 PF07690 Major Facilitator Superfamily Varpa_0959 PF01678 Diaminopimelate epimerase Varpa_0962 PF02899 Phage integrase, N-terminal SAM-like domain Varpa_0962 PF00589 Phage integrase family Varpa_0963 PF17785 PUA-like domain Varpa_0963 PF10672 S-adenosylmethionine-dependent methyltransferase Varpa_0964 PF07683 Cobalamin synthesis protein cobW C-terminal domain Varpa_0964 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_0966 PF01258 Prokaryotic dksA/traR C4-type zinc finger Varpa_0968 PF00227 Proteasome subunit Varpa_0969 PF07724 AAA domain (Cdc48 subfamily) Varpa_0969 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_0970 PF02381 MraZ protein, putative antitoxin-like Varpa_0971 PF01795 MraW methylase family Varpa_0973 PF00905 Penicillin binding protein transpeptidase domain Varpa_0973 PF03717 Penicillin-binding Protein dimerisation domain Varpa_0974 PF08245 Mur ligase middle domain Varpa_0974 PF02875 Mur ligase family, glutamate ligase domain Varpa_0975 PF02875 Mur ligase family, glutamate ligase domain Varpa_0975 PF08245 Mur ligase middle domain Varpa_0975 PF01225 Mur ligase family, catalytic domain Varpa_0976 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Varpa_0976 PF00953 Glycosyl transferase family 4 Varpa_0977 PF08245 Mur ligase middle domain Varpa_0977 PF02875 Mur ligase family, glutamate ligase domain Varpa_0978 PF01098 Cell cycle protein Varpa_0979 PF04101 Glycosyltransferase family 28 C-terminal domain Varpa_0979 PF03033 Glycosyltransferase family 28 N-terminal domain Varpa_0980 PF02875 Mur ligase family, glutamate ligase domain Varpa_0980 PF08245 Mur ligase middle domain Varpa_0980 PF01225 Mur ligase family, catalytic domain Varpa_0981 PF07478 D-ala D-ala ligase C-terminus Varpa_0981 PF01820 D-ala D-ala ligase N-terminus Varpa_0982 PF08478 POTRA domain, FtsQ-type Varpa_0982 PF03799 Cell division protein FtsQ Varpa_0983 PF02491 SHS2 domain inserted in FTSA Varpa_0984 PF12327 FtsZ family, C-terminal domain Varpa_0984 PF00091 Tubulin/FtsZ family, GTPase domain Varpa_0985 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Varpa_0987 PF02075 Crossover junction endodeoxyribonuclease RuvC Varpa_0991 PF00912 Transglycosylase Varpa_0992 PF08501 Shikimate dehydrogenase substrate binding domain Varpa_0992 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Varpa_0992 PF01488 Shikimate / quinate 5-dehydrogenase Varpa_0994 PF17876 Cold shock domain Varpa_0994 PF08206 Ribonuclease B OB domain Varpa_0994 PF00575 S1 RNA binding domain Varpa_0994 PF00773 RNB domain Varpa_0995 PF05728 Uncharacterised protein family (UPF0227) Varpa_0996 PF00072 Response regulator receiver domain Varpa_0996 PF00196 Bacterial regulatory proteins, luxR family Varpa_0997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_0997 PF07730 Histidine kinase Varpa_0997 PF00672 HAMP domain Varpa_0998 PF01098 Cell cycle protein Varpa_0999 PF01523 Putative modulator of DNA gyrase Varpa_1001 PF00793 DAHP synthetase I family Varpa_1003 PF02875 Mur ligase family, glutamate ligase domain Varpa_1003 PF01225 Mur ligase family, catalytic domain Varpa_1003 PF08245 Mur ligase middle domain Varpa_1005 PF00578 AhpC/TSA family Varpa_1006 PF00364 Biotin-requiring enzyme Varpa_1007 PF02785 Biotin carboxylase C-terminal domain Varpa_1007 PF00289 Biotin carboxylase, N-terminal domain Varpa_1007 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_1010 PF00294 pfkB family carbohydrate kinase Varpa_1012 PF00268 Ribonucleotide reductase, small chain Varpa_1013 PF02867 Ribonucleotide reductase, barrel domain Varpa_1013 PF00317 Ribonucleotide reductase, all-alpha domain Varpa_1013 PF03477 ATP cone domain Varpa_1014 PF01510 N-acetylmuramoyl-L-alanine amidase Varpa_1015 PF02954 Bacterial regulatory protein, Fis family Varpa_1015 PF00158 Sigma-54 interaction domain Varpa_1015 PF00072 Response regulator receiver domain Varpa_1016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1016 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1018 PF01578 Cytochrome C assembly protein Varpa_1019 PF02978 Signal peptide binding domain Varpa_1019 PF02881 SRP54-type protein, helical bundle domain Varpa_1019 PF00448 SRP54-type protein, GTPase domain Varpa_1020 PF00535 Glycosyl transferase family 2 Varpa_1021 PF00072 Response regulator receiver domain Varpa_1021 PF00158 Sigma-54 interaction domain Varpa_1023 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1024 PF01938 TRAM domain Varpa_1024 PF00919 Uncharacterized protein family UPF0004 Varpa_1024 PF04055 Radical SAM superfamily Varpa_1026 PF13533 Biotin-lipoyl like Varpa_1027 PF00873 AcrB/AcrD/AcrF family Varpa_1032 PF00300 Histidine phosphatase superfamily (branch 1) Varpa_1034 PF01171 PP-loop family Varpa_1039 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Varpa_1041 PF00005 ABC transporter Varpa_1042 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1043 PF17263 Family of unknown function (DUF5329) Varpa_1044 PF00459 Inositol monophosphatase family Varpa_1046 PF00480 ROK family Varpa_1049 PF00392 Bacterial regulatory proteins, gntR family Varpa_1049 PF00155 Aminotransferase class I and II Varpa_1051 PF00982 Glycosyltransferase family 20 Varpa_1052 PF00723 Glycosyl hydrolases family 15 Varpa_1053 PF02358 Trehalose-phosphatase Varpa_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1054 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1055 PF01966 HD domain Varpa_1055 PF12627 Probable RNA and SrmB- binding site of polymerase A Varpa_1055 PF01743 Poly A polymerase head domain Varpa_1057 PF14497 Glutathione S-transferase, C-terminal domain Varpa_1057 PF02798 Glutathione S-transferase, N-terminal domain Varpa_1058 PF02308 MgtC family Varpa_1059 PF14718 Soluble lytic murein transglycosylase L domain Varpa_1059 PF01464 Transglycosylase SLT domain Varpa_1060 PF01812 5-formyltetrahydrofolate cyclo-ligase family Varpa_1061 PF03466 LysR substrate binding domain Varpa_1061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1064 PF00027 Cyclic nucleotide-binding domain Varpa_1064 PF13545 Crp-like helix-turn-helix domain Varpa_1066 PF12804 MobA-like NTP transferase domain Varpa_1066 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_1067 PF01037 Lrp/AsnC ligand binding domain Varpa_1068 PF01380 SIS domain Varpa_1069 PF00202 Aminotransferase class-III Varpa_1071 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1074 PF08402 TOBE domain Varpa_1074 PF00005 ABC transporter Varpa_1075 PF01037 Lrp/AsnC ligand binding domain Varpa_1078 PF02653 Branched-chain amino acid transport system / permease component Varpa_1079 PF00005 ABC transporter Varpa_1080 PF13407 Periplasmic binding protein domain Varpa_1081 PF02653 Branched-chain amino acid transport system / permease component Varpa_1082 PF00294 pfkB family carbohydrate kinase Varpa_1083 PF05025 RbsD / FucU transport protein family Varpa_1084 PF00171 Aldehyde dehydrogenase family Varpa_1085 PF01791 DeoC/LacD family aldolase Varpa_1086 PF08220 DeoR-like helix-turn-helix domain Varpa_1086 PF00455 DeoR C terminal sensor domain Varpa_1087 PF01037 Lrp/AsnC ligand binding domain Varpa_1087 PF13404 AsnC-type helix-turn-helix domain Varpa_1090 PF02563 Polysaccharide biosynthesis/export protein Varpa_1090 PF10531 SLBB domain Varpa_1091 PF01451 Low molecular weight phosphotyrosine protein phosphatase Varpa_1092 PF02706 Chain length determinant protein Varpa_1092 PF13807 G-rich domain on putative tyrosine kinase Varpa_1092 PF13614 AAA domain Varpa_1093 PF02397 Bacterial sugar transferase Varpa_1096 PF13439 Glycosyltransferase Family 4 Varpa_1096 PF00534 Glycosyl transferases group 1 Varpa_1101 PF14850 DNA-binding domain of Proline dehydrogenase Varpa_1101 PF01619 Proline dehydrogenase Varpa_1101 PF00171 Aldehyde dehydrogenase family Varpa_1101 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Varpa_1105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Varpa_1106 PF02875 Mur ligase family, glutamate ligase domain Varpa_1106 PF01225 Mur ligase family, catalytic domain Varpa_1106 PF08245 Mur ligase middle domain Varpa_1108 PF01263 Aldose 1-epimerase Varpa_1109 PF08450 SMP-30/Gluconolactonase/LRE-like region Varpa_1111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1111 PF03466 LysR substrate binding domain Varpa_1112 PF00171 Aldehyde dehydrogenase family Varpa_1113 PF13407 Periplasmic binding protein domain Varpa_1114 PF13407 Periplasmic binding protein domain Varpa_1115 PF00005 ABC transporter Varpa_1116 PF02653 Branched-chain amino acid transport system / permease component Varpa_1117 PF00005 ABC transporter Varpa_1118 PF02653 Branched-chain amino acid transport system / permease component Varpa_1119 PF02653 Branched-chain amino acid transport system / permease component Varpa_1120 PF00920 Dehydratase family Varpa_1121 PF00701 Dihydrodipicolinate synthetase family Varpa_1122 PF03466 LysR substrate binding domain Varpa_1122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1129 PF00664 ABC transporter transmembrane region Varpa_1129 PF00005 ABC transporter Varpa_1131 PF01757 Acyltransferase family Varpa_1133 PF06508 Queuosine biosynthesis protein QueC Varpa_1134 PF06472 ABC transporter transmembrane region 2 Varpa_1134 PF00005 ABC transporter Varpa_1138 PF00005 ABC transporter Varpa_1138 PF08402 TOBE domain Varpa_1139 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1140 PF07690 Major Facilitator Superfamily Varpa_1141 PF00155 Aminotransferase class I and II Varpa_1141 PF00392 Bacterial regulatory proteins, gntR family Varpa_1143 PF00034 Cytochrome c Varpa_1144 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Varpa_1144 PF00034 Cytochrome c Varpa_1145 PF01979 Amidohydrolase family Varpa_1146 PF05506 Domain of unknown function (DUF756) Varpa_1146 PF04185 Phosphoesterase family Varpa_1148 PF04185 Phosphoesterase family Varpa_1148 PF05506 Domain of unknown function (DUF756) Varpa_1149 PF04185 Phosphoesterase family Varpa_1149 PF05506 Domain of unknown function (DUF756) Varpa_1154 PF00482 Type II secretion system (T2SS), protein F Varpa_1155 PF00437 Type II/IV secretion system protein Varpa_1156 PF00263 Bacterial type II and III secretion system protein Varpa_1156 PF03958 Bacterial type II/III secretion system short domain Varpa_1161 PF11612 Type II secretion system (T2SS), protein J Varpa_1161 PF07963 Prokaryotic N-terminal methylation motif Varpa_1162 PF07963 Prokaryotic N-terminal methylation motif Varpa_1162 PF02501 Type II secretion system (T2SS), protein I Varpa_1164 PF08334 Type II secretion system (T2SS), protein G Varpa_1164 PF07963 Prokaryotic N-terminal methylation motif Varpa_1166 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_1166 PF00585 C-terminal regulatory domain of Threonine dehydratase Varpa_1168 PF13609 Gram-negative porin Varpa_1169 PF02566 OsmC-like protein Varpa_1170 PF03232 Ubiquinone biosynthesis protein COQ7 Varpa_1171 PF13609 Gram-negative porin Varpa_1172 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1173 PF07687 Peptidase dimerisation domain Varpa_1173 PF01546 Peptidase family M20/M25/M40 Varpa_1175 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1175 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_1176 PF00005 ABC transporter Varpa_1176 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1177 PF00005 ABC transporter Varpa_1177 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1179 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Varpa_1180 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Varpa_1180 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Varpa_1182 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1183 PF08402 TOBE domain Varpa_1183 PF00005 ABC transporter Varpa_1186 PF00923 Transaldolase/Fructose-6-phosphate aldolase Varpa_1187 PF00342 Phosphoglucose isomerase Varpa_1188 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Varpa_1189 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1190 PF03466 LysR substrate binding domain Varpa_1190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1192 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1193 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1194 PF17912 MalK OB fold domain Varpa_1194 PF00005 ABC transporter Varpa_1194 PF03459 TOBE domain Varpa_1195 PF01232 Mannitol dehydrogenase Rossmann domain Varpa_1195 PF08125 Mannitol dehydrogenase C-terminal domain Varpa_1197 PF00923 Transaldolase/Fructose-6-phosphate aldolase Varpa_1198 PF00294 pfkB family carbohydrate kinase Varpa_1199 PF12833 Helix-turn-helix domain Varpa_1199 PF00072 Response regulator receiver domain Varpa_1200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Varpa_1200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_1201 PF00118 TCP-1/cpn60 chaperonin family Varpa_1202 PF00166 Chaperonin 10 Kd subunit Varpa_1203 PF01546 Peptidase family M20/M25/M40 Varpa_1203 PF07687 Peptidase dimerisation domain Varpa_1204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1204 PF03466 LysR substrate binding domain Varpa_1207 PF13091 PLD-like domain Varpa_1208 PF07715 TonB-dependent Receptor Plug Domain Varpa_1208 PF00593 TonB dependent receptor Varpa_1211 PF07715 TonB-dependent Receptor Plug Domain Varpa_1211 PF00593 TonB dependent receptor Varpa_1212 PF00438 S-adenosylmethionine synthetase, N-terminal domain Varpa_1212 PF02772 S-adenosylmethionine synthetase, central domain Varpa_1212 PF02773 S-adenosylmethionine synthetase, C-terminal domain Varpa_1214 PF03279 Bacterial lipid A biosynthesis acyltransferase Varpa_1216 PF01926 50S ribosome-binding GTPase Varpa_1217 PF00034 Cytochrome c Varpa_1218 PF05140 ResB-like family Varpa_1219 PF01578 Cytochrome C assembly protein Varpa_1220 PF00174 Oxidoreductase molybdopterin binding domain Varpa_1221 PF01794 Ferric reductase like transmembrane component Varpa_1222 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Varpa_1222 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Varpa_1224 PF01491 Frataxin-like domain Varpa_1225 PF17092 Penicillin-binding protein OB-like domain Varpa_1225 PF00912 Transglycosylase Varpa_1225 PF00905 Penicillin binding protein transpeptidase domain Varpa_1230 PF03958 Bacterial type II/III secretion system short domain Varpa_1230 PF00263 Bacterial type II and III secretion system protein Varpa_1230 PF07660 Secretin and TonB N terminus short domain Varpa_1230 PF11741 AMIN domain Varpa_1231 PF01202 Shikimate kinase Varpa_1232 PF01761 3-dehydroquinate synthase Varpa_1233 PF13286 Phosphohydrolase-associated domain Varpa_1233 PF01966 HD domain Varpa_1238 PF01493 GXGXG motif Varpa_1238 PF01645 Conserved region in glutamate synthase Varpa_1238 PF00310 Glutamine amidotransferases class-II Varpa_1238 PF04898 Glutamate synthase central domain Varpa_1239 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Varpa_1239 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_1240 PF00005 ABC transporter Varpa_1241 PF02405 Permease MlaE Varpa_1242 PF02470 MlaD protein Varpa_1243 PF04333 MlaA lipoprotein Varpa_1246 PF00005 ABC transporter Varpa_1247 PF01061 ABC-2 type transporter Varpa_1248 PF01722 BolA-like protein Varpa_1249 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Varpa_1250 PF01634 ATP phosphoribosyltransferase Varpa_1251 PF00815 Histidinol dehydrogenase Varpa_1255 PF00155 Aminotransferase class I and II Varpa_1256 PF00475 Imidazoleglycerol-phosphate dehydratase Varpa_1257 PF00117 Glutamine amidotransferase class-I Varpa_1258 PF00977 Histidine biosynthesis protein Varpa_1259 PF02463 RecF/RecN/SMC N terminal domain Varpa_1260 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_1261 PF00375 Sodium:dicarboxylate symporter family Varpa_1263 PF00977 Histidine biosynthesis protein Varpa_1264 PF01502 Phosphoribosyl-AMP cyclohydrolase Varpa_1265 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Varpa_1267 PF01230 HIT domain Varpa_1268 PF02416 mttA/Hcf106 family Varpa_1269 PF02416 mttA/Hcf106 family Varpa_1270 PF00902 Sec-independent protein translocase protein (TatC) Varpa_1271 PF17820 PDZ domain Varpa_1271 PF13180 PDZ domain Varpa_1272 PF00083 Sugar (and other) transporter Varpa_1272 PF08946 Osmosensory transporter coiled coil Varpa_1273 PF01784 NIF3 (NGG1p interacting factor 3) Varpa_1274 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Varpa_1275 PF01741 Large-conductance mechanosensitive channel, MscL Varpa_1276 PF18071 HMW1C N-terminal Varpa_1276 PF18254 HMW1 domain 2 Varpa_1278 PF00072 Response regulator receiver domain Varpa_1278 PF00196 Bacterial regulatory proteins, luxR family Varpa_1279 PF00355 Rieske [2Fe-2S] domain Varpa_1279 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Varpa_1280 PF00033 Cytochrome b/b6/petB Varpa_1280 PF00032 Cytochrome b(C-terminal)/b6/petD Varpa_1281 PF02167 Cytochrome C1 family Varpa_1282 PF02798 Glutathione S-transferase, N-terminal domain Varpa_1282 PF00043 Glutathione S-transferase, C-terminal domain Varpa_1283 PF04386 Stringent starvation protein B Varpa_1284 PF00106 short chain dehydrogenase Varpa_1286 PF03472 Autoinducer binding domain Varpa_1286 PF00196 Bacterial regulatory proteins, luxR family Varpa_1287 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Varpa_1287 PF00072 Response regulator receiver domain Varpa_1287 PF01627 Hpt domain Varpa_1287 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1287 PF00672 HAMP domain Varpa_1287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1288 PF17768 RecJ OB domain Varpa_1288 PF01368 DHH family Varpa_1288 PF02272 DHHA1 domain Varpa_1290 PF12704 MacB-like periplasmic core domain Varpa_1290 PF02687 FtsX-like permease family Varpa_1291 PF00005 ABC transporter Varpa_1292 PF04542 Sigma-70 region 2 Varpa_1292 PF08281 Sigma-70, region 4 Varpa_1292 PF12680 SnoaL-like domain Varpa_1293 PF00574 Clp protease Varpa_1294 PF01042 Endoribonuclease L-PSP Varpa_1295 PF12793 Sugar transport-related sRNA regulator N-term Varpa_1295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_1296 PF10282 Lactonase, 7-bladed beta-propeller Varpa_1297 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1298 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_1298 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1299 PF00005 ABC transporter Varpa_1299 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1300 PF00005 ABC transporter Varpa_1302 PF01418 Helix-turn-helix domain, rpiR family Varpa_1302 PF01380 SIS domain Varpa_1303 PF07969 Amidohydrolase family Varpa_1307 PF08031 Berberine and berberine like Varpa_1307 PF01565 FAD binding domain Varpa_1308 PF01202 Shikimate kinase Varpa_1310 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_1315 PF04072 Leucine carboxyl methyltransferase Varpa_1316 PF01613 Flavin reductase like domain Varpa_1319 PF01575 MaoC like domain Varpa_1319 PF00171 Aldehyde dehydrogenase family Varpa_1320 PF00005 ABC transporter Varpa_1321 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_1321 PF00005 ABC transporter Varpa_1324 PF00175 Oxidoreductase NAD-binding domain Varpa_1324 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_1324 PF00970 Oxidoreductase FAD-binding domain Varpa_1325 PF01883 Iron-sulfur cluster assembly protein Varpa_1326 PF05138 Phenylacetic acid catabolic protein Varpa_1327 PF06243 Phenylacetic acid degradation B Varpa_1328 PF05138 Phenylacetic acid catabolic protein Varpa_1330 PF03061 Thioesterase superfamily Varpa_1331 PF00378 Enoyl-CoA hydratase/isomerase Varpa_1332 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_1333 PF00440 Bacterial regulatory proteins, tetR family Varpa_1334 PF00106 short chain dehydrogenase Varpa_1336 PF07584 Aerotolerance regulator N-terminal Varpa_1336 PF13519 von Willebrand factor type A domain Varpa_1337 PF01882 Protein of unknown function DUF58 Varpa_1338 PF17863 AAA lid domain Varpa_1338 PF07726 ATPase family associated with various cellular activities (AAA) Varpa_1339 PF00595 PDZ domain Varpa_1340 PF01026 TatD related DNase Varpa_1344 PF00437 Type II/IV secretion system protein Varpa_1344 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Varpa_1346 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_1347 PF03466 LysR substrate binding domain Varpa_1347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1348 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1351 PF00106 short chain dehydrogenase Varpa_1354 PF08484 C-methyltransferase C-terminal domain Varpa_1354 PF08421 Putative zinc binding domain Varpa_1355 PF16363 GDP-mannose 4,6 dehydratase Varpa_1358 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_1358 PF00107 Zinc-binding dehydrogenase Varpa_1360 PF13593 SBF-like CPA transporter family (DUF4137) Varpa_1361 PF02690 Na+/Pi-cotransporter Varpa_1362 PF00149 Calcineurin-like phosphoesterase Varpa_1363 PF12857 TOBE-like domain Varpa_1363 PF00005 ABC transporter Varpa_1363 PF17850 CysA C-terminal regulatory domain Varpa_1364 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1365 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1367 PF00356 Bacterial regulatory proteins, lacI family Varpa_1368 PF01252 Signal peptidase (SPase) II Varpa_1369 PF06827 Zinc finger found in FPG and IleRS Varpa_1369 PF08264 Anticodon-binding domain of tRNA Varpa_1369 PF00133 tRNA synthetases class I (I, L, M and V) Varpa_1370 PF01687 Riboflavin kinase Varpa_1370 PF06574 FAD synthetase Varpa_1372 PF00378 Enoyl-CoA hydratase/isomerase Varpa_1373 PF01674 Lipase (class 2) Varpa_1375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_1375 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_1375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_1376 PF00551 Formyl transferase Varpa_1380 PF01189 16S rRNA methyltransferase RsmB/F Varpa_1380 PF01029 NusB family Varpa_1382 PF00471 Ribosomal protein L33 Varpa_1383 PF00830 Ribosomal L28 family Varpa_1384 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_1385 PF00027 Cyclic nucleotide-binding domain Varpa_1385 PF13545 Crp-like helix-turn-helix domain Varpa_1386 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Varpa_1386 PF01580 FtsK/SpoIIIE family Varpa_1386 PF09397 Ftsk gamma domain Varpa_1386 PF17854 FtsK alpha domain Varpa_1387 PF03548 Outer membrane lipoprotein carrier protein LolA Varpa_1388 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_1388 PF16193 AAA C-terminal domain Varpa_1388 PF12002 MgsA AAA+ ATPase C terminal Varpa_1389 PF02653 Branched-chain amino acid transport system / permease component Varpa_1390 PF11862 Domain of unknown function (DUF3382) Varpa_1390 PF02653 Branched-chain amino acid transport system / permease component Varpa_1391 PF00005 ABC transporter Varpa_1391 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_1392 PF00005 ABC transporter Varpa_1393 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1394 PF00175 Oxidoreductase NAD-binding domain Varpa_1394 PF00970 Oxidoreductase FAD-binding domain Varpa_1394 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_1397 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_1398 PF00293 NUDIX domain Varpa_1398 PF09297 NADH pyrophosphatase zinc ribbon domain Varpa_1398 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Varpa_1399 PF01206 Sulfurtransferase TusA Varpa_1400 PF00483 Nucleotidyl transferase Varpa_1401 PF08264 Anticodon-binding domain of tRNA Varpa_1401 PF10458 Valyl tRNA synthetase tRNA binding arm Varpa_1401 PF00133 tRNA synthetases class I (I, L, M and V) Varpa_1402 PF03883 Peroxide stress protein YaaA Varpa_1404 PF00561 alpha/beta hydrolase fold Varpa_1405 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Varpa_1405 PF14489 QueF-like protein Varpa_1406 PF00106 short chain dehydrogenase Varpa_1409 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_1409 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_1409 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_1411 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_1411 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_1411 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_1412 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1413 PF13193 AMP-binding enzyme C-terminal domain Varpa_1413 PF00501 AMP-binding enzyme Varpa_1418 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Varpa_1418 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Varpa_1420 PF00817 impB/mucB/samB family Varpa_1420 PF11799 impB/mucB/samB family C-terminal domain Varpa_1420 PF11798 IMS family HHH motif Varpa_1421 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Varpa_1423 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1424 PF03466 LysR substrate binding domain Varpa_1424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1425 PF07519 Tannase and feruloyl esterase Varpa_1427 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1428 PF01548 Transposase Varpa_1428 PF02371 Transposase IS116/IS110/IS902 family Varpa_1429 PF07729 FCD domain Varpa_1429 PF00392 Bacterial regulatory proteins, gntR family Varpa_1430 PF13609 Gram-negative porin Varpa_1434 PF00005 ABC transporter Varpa_1435 PF02653 Branched-chain amino acid transport system / permease component Varpa_1437 PF13378 Enolase C-terminal domain-like Varpa_1437 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Varpa_1441 PF00083 Sugar (and other) transporter Varpa_1442 PF01070 FMN-dependent dehydrogenase Varpa_1443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1443 PF03466 LysR substrate binding domain Varpa_1444 PF02652 L-lactate permease Varpa_1447 PF02560 Cyanate lyase C-terminal domain Varpa_1448 PF00106 short chain dehydrogenase Varpa_1453 PF04304 Protein of unknown function (DUF454) Varpa_1457 PF03971 Monomeric isocitrate dehydrogenase Varpa_1458 PF00005 ABC transporter Varpa_1459 PF07690 Major Facilitator Superfamily Varpa_1460 PF00392 Bacterial regulatory proteins, gntR family Varpa_1460 PF07729 FCD domain Varpa_1462 PF04536 TPM domain Varpa_1463 PF00905 Penicillin binding protein transpeptidase domain Varpa_1463 PF00912 Transglycosylase Varpa_1465 PF01810 LysE type translocator Varpa_1469 PF01425 Amidase Varpa_1471 PF00083 Sugar (and other) transporter Varpa_1473 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1475 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1477 PF00905 Penicillin binding protein transpeptidase domain Varpa_1480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_1486 PF04542 Sigma-70 region 2 Varpa_1486 PF04545 Sigma-70, region 4 Varpa_1490 PF00665 Integrase core domain Varpa_1490 PF13276 HTH-like domain Varpa_1491 PF01527 Transposase Varpa_1497 PF02321 Outer membrane efflux protein Varpa_1498 PF00873 AcrB/AcrD/AcrF family Varpa_1499 PF00529 HlyD membrane-fusion protein of T1SS Varpa_1499 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_1501 PF00206 Lyase Varpa_1501 PF14698 Argininosuccinate lyase C-terminal Varpa_1502 PF07694 5TMR of 5TMR-LYT Varpa_1502 PF06580 Histidine kinase Varpa_1503 PF00072 Response regulator receiver domain Varpa_1503 PF04397 LytTr DNA-binding domain Varpa_1504 PF01594 AI-2E family transporter Varpa_1505 PF01638 HxlR-like helix-turn-helix Varpa_1509 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1509 PF03466 LysR substrate binding domain Varpa_1510 PF07690 Major Facilitator Superfamily Varpa_1512 PF00311 Phosphoenolpyruvate carboxylase Varpa_1513 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Varpa_1513 PF03900 Porphobilinogen deaminase, C-terminal domain Varpa_1517 PF07690 Major Facilitator Superfamily Varpa_1518 PF03466 LysR substrate binding domain Varpa_1518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1519 PF10150 Ribonuclease E/G family Varpa_1519 PF12111 Polyribonucleotide phosphorylase C terminal Varpa_1519 PF00575 S1 RNA binding domain Varpa_1520 PF01479 S4 domain Varpa_1520 PF00849 RNA pseudouridylate synthase Varpa_1523 PF06965 Na+/H+ antiporter 1 Varpa_1523 PF01343 Peptidase family S49 Varpa_1524 PF07690 Major Facilitator Superfamily Varpa_1525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Varpa_1526 PF02545 Maf-like protein Varpa_1527 PF02620 Large ribosomal RNA subunit accumulation protein YceD Varpa_1528 PF01783 Ribosomal L32p protein family Varpa_1529 PF02504 Fatty acid synthesis protein Varpa_1530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Varpa_1530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Varpa_1531 PF00698 Acyl transferase domain Varpa_1533 PF00550 Phosphopantetheine attachment site Varpa_1534 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_1534 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_1536 PF04542 Sigma-70 region 2 Varpa_1536 PF08281 Sigma-70, region 4 Varpa_1539 PF13180 PDZ domain Varpa_1540 PF06421 GTP-binding protein LepA C-terminus Varpa_1540 PF03144 Elongation factor Tu domain 2 Varpa_1540 PF00009 Elongation factor Tu GTP binding domain Varpa_1540 PF00679 Elongation factor G C-terminus Varpa_1541 PF10502 Signal peptidase, peptidase S26 Varpa_1543 PF14622 Ribonuclease-III-like Varpa_1543 PF00035 Double-stranded RNA binding motif Varpa_1544 PF07650 KH domain Varpa_1544 PF01926 50S ribosome-binding GTPase Varpa_1545 PF02565 Recombination protein O C terminal Varpa_1545 PF11967 Recombination protein O N terminal Varpa_1546 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Varpa_1547 PF01648 4'-phosphopantetheinyl transferase superfamily Varpa_1548 PF00933 Glycosyl hydrolase family 3 N terminal domain Varpa_1550 PF01863 Protein of unknown function DUF45 Varpa_1551 PF00012 Hsp70 protein Varpa_1555 PF00152 tRNA synthetases class II (D, K and N) Varpa_1555 PF01336 OB-fold nucleic acid binding domain Varpa_1557 PF02325 YGGT family Varpa_1558 PF01039 Carboxyl transferase domain Varpa_1558 PF17848 Acetyl-coA carboxylase zinc finger domain Varpa_1559 PF00290 Tryptophan synthase alpha chain Varpa_1560 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_1561 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Varpa_1562 PF01416 tRNA pseudouridine synthase Varpa_1564 PF02774 Semialdehyde dehydrogenase, dimerisation domain Varpa_1564 PF01118 Semialdehyde dehydrogenase, NAD binding domain Varpa_1565 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_1566 PF00694 Aconitase C-terminal domain Varpa_1567 PF00330 Aconitase family (aconitate hydratase) Varpa_1568 PF03466 LysR substrate binding domain Varpa_1568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1569 PF00285 Citrate synthase, C-terminal domain Varpa_1570 PF03937 Flavinator of succinate dehydrogenase Varpa_1571 PF13085 2Fe-2S iron-sulfur cluster binding domain Varpa_1572 PF00890 FAD binding domain Varpa_1572 PF02910 Fumarate reductase flavoprotein C-term Varpa_1575 PF00392 Bacterial regulatory proteins, gntR family Varpa_1575 PF07702 UTRA domain Varpa_1576 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Varpa_1576 PF00056 lactate/malate dehydrogenase, NAD binding domain Varpa_1580 PF00330 Aconitase family (aconitate hydratase) Varpa_1580 PF11791 Aconitate B N-terminal domain Varpa_1580 PF06434 Aconitate hydratase 2 N-terminus Varpa_1586 PF03895 YadA-like membrane anchor domain Varpa_1586 PF05658 Head domain of trimeric autotransporter adhesin Varpa_1586 PF05662 Coiled stalk of trimeric autotransporter adhesin Varpa_1586 PF13018 Extended Signal Peptide of Type V secretion system Varpa_1590 PF09317 Domain of unknown function (DUF1974) Varpa_1590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_1590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_1593 PF00694 Aconitase C-terminal domain Varpa_1593 PF00330 Aconitase family (aconitate hydratase) Varpa_1596 PF07670 Nucleoside recognition Varpa_1596 PF07664 Ferrous iron transport protein B C terminus Varpa_1596 PF02421 Ferrous iron transport protein B Varpa_1598 PF01494 FAD binding domain Varpa_1600 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Varpa_1601 PF03301 Tryptophan 2,3-dioxygenase Varpa_1603 PF00266 Aminotransferase class-V Varpa_1604 PF04199 Putative cyclase Varpa_1606 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Varpa_1606 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Varpa_1607 PF00202 Aminotransferase class-III Varpa_1609 PF01649 Ribosomal protein S20 Varpa_1610 PF03023 Lipid II flippase MurJ Varpa_1611 PF13369 Transglutaminase-like superfamily Varpa_1613 PF03795 YCII-related domain Varpa_1614 PF03795 YCII-related domain Varpa_1616 PF04542 Sigma-70 region 2 Varpa_1616 PF08281 Sigma-70, region 4 Varpa_1617 PF12833 Helix-turn-helix domain Varpa_1617 PF02311 AraC-like ligand binding domain Varpa_1621 PF00586 AIR synthase related protein, N-terminal domain Varpa_1621 PF02769 AIR synthase related protein, C-terminal domain Varpa_1622 PF00308 Bacterial dnaA protein Varpa_1623 PF12627 Probable RNA and SrmB- binding site of polymerase A Varpa_1623 PF12626 Polymerase A arginine-rich C-terminus Varpa_1623 PF01743 Poly A polymerase head domain Varpa_1624 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Varpa_1625 PF01865 Protein of unknown function DUF47 Varpa_1626 PF01384 Phosphate transporter family Varpa_1629 PF00886 Ribosomal protein S16 Varpa_1630 PF01782 RimM N-terminal domain Varpa_1630 PF05239 PRC-barrel domain Varpa_1631 PF01746 tRNA (Guanine-1)-methyltransferase Varpa_1632 PF01245 Ribosomal protein L19 Varpa_1633 PF00293 NUDIX domain Varpa_1634 PF03186 CobD/Cbib protein Varpa_1634 PF17113 Regulatory signalling modulator protein AmpE Varpa_1635 PF00155 Aminotransferase class I and II Varpa_1636 PF03193 RsgA GTPase Varpa_1637 PF01329 Pterin 4 alpha carbinolamine dehydratase Varpa_1638 PF01435 Peptidase family M48 Varpa_1639 PF00929 Exonuclease Varpa_1640 PF00270 DEAD/DEAH box helicase Varpa_1640 PF00271 Helicase conserved C-terminal domain Varpa_1641 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Varpa_1641 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Varpa_1642 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Varpa_1642 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_1642 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_1643 PF08386 TAP-like protein Varpa_1643 PF00561 alpha/beta hydrolase fold Varpa_1644 PF14765 Polyketide synthase dehydratase Varpa_1644 PF00550 Phosphopantetheine attachment site Varpa_1644 PF00107 Zinc-binding dehydrogenase Varpa_1644 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_1644 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_1644 PF00698 Acyl transferase domain Varpa_1644 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_1644 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_1644 PF08659 KR domain Varpa_1648 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_1648 PF00175 Oxidoreductase NAD-binding domain Varpa_1649 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Varpa_1649 PF00355 Rieske [2Fe-2S] domain Varpa_1651 PF00501 AMP-binding enzyme Varpa_1651 PF13193 AMP-binding enzyme C-terminal domain Varpa_1652 PF02803 Thiolase, C-terminal domain Varpa_1652 PF00108 Thiolase, N-terminal domain Varpa_1654 PF04199 Putative cyclase Varpa_1656 PF13458 Periplasmic binding protein Varpa_1657 PF13458 Periplasmic binding protein Varpa_1658 PF00355 Rieske [2Fe-2S] domain Varpa_1658 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Varpa_1659 PF00866 Ring hydroxylating beta subunit Varpa_1661 PF02653 Branched-chain amino acid transport system / permease component Varpa_1662 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_1662 PF00005 ABC transporter Varpa_1663 PF00005 ABC transporter Varpa_1664 PF13193 AMP-binding enzyme C-terminal domain Varpa_1664 PF00501 AMP-binding enzyme Varpa_1665 PF00106 short chain dehydrogenase Varpa_1674 PF07859 alpha/beta hydrolase fold Varpa_1675 PF00478 IMP dehydrogenase / GMP reductase domain Varpa_1676 PF13361 UvrD-like helicase C-terminal domain Varpa_1676 PF00580 UvrD/REP helicase N-terminal domain Varpa_1680 PF01636 Phosphotransferase enzyme family Varpa_1682 PF01367 5'-3' exonuclease, C-terminal SAM fold Varpa_1682 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Varpa_1682 PF00476 DNA polymerase family A Varpa_1682 PF01612 3'-5' exonuclease Varpa_1683 PF01546 Peptidase family M20/M25/M40 Varpa_1683 PF07687 Peptidase dimerisation domain Varpa_1684 PF03466 LysR substrate binding domain Varpa_1684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1685 PF02525 Flavodoxin-like fold Varpa_1686 PF00155 Aminotransferase class I and II Varpa_1686 PF00392 Bacterial regulatory proteins, gntR family Varpa_1687 PF02627 Carboxymuconolactone decarboxylase family Varpa_1688 PF00893 Small Multidrug Resistance protein Varpa_1690 PF07715 TonB-dependent Receptor Plug Domain Varpa_1690 PF00593 TonB dependent receptor Varpa_1692 PF01266 FAD dependent oxidoreductase Varpa_1693 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_1695 PF01738 Dienelactone hydrolase family Varpa_1698 PF07969 Amidohydrolase family Varpa_1699 PF00005 ABC transporter Varpa_1699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_1700 PF00005 ABC transporter Varpa_1701 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1702 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1703 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_1704 PF07364 Metallopeptidase family M81 Varpa_1704 PF07171 MlrC C-terminus Varpa_1705 PF01266 FAD dependent oxidoreductase Varpa_1709 PF03466 LysR substrate binding domain Varpa_1709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1710 PF01118 Semialdehyde dehydrogenase, NAD binding domain Varpa_1715 PF01546 Peptidase family M20/M25/M40 Varpa_1715 PF07687 Peptidase dimerisation domain Varpa_1716 PF11737 Protein of unknown function (DUF3300) Varpa_1719 PF00005 ABC transporter Varpa_1721 PF00581 Rhodanese-like domain Varpa_1724 PF02609 Exonuclease VII small subunit Varpa_1725 PF00348 Polyprenyl synthetase Varpa_1726 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Varpa_1726 PF02780 Transketolase, C-terminal domain Varpa_1726 PF02779 Transketolase, pyrimidine binding domain Varpa_1727 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_1728 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_1730 PF03781 Sulfatase-modifying factor enzyme 1 Varpa_1730 PF12867 DinB superfamily Varpa_1731 PF07690 Major Facilitator Superfamily Varpa_1732 PF00266 Aminotransferase class-V Varpa_1734 PF00005 ABC transporter Varpa_1737 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Varpa_1738 PF00171 Aldehyde dehydrogenase family Varpa_1740 PF01266 FAD dependent oxidoreductase Varpa_1741 PF00171 Aldehyde dehydrogenase family Varpa_1742 PF00202 Aminotransferase class-III Varpa_1743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1743 PF03466 LysR substrate binding domain Varpa_1744 PF07702 UTRA domain Varpa_1744 PF00392 Bacterial regulatory proteins, gntR family Varpa_1746 PF02653 Branched-chain amino acid transport system / permease component Varpa_1748 PF00005 ABC transporter Varpa_1748 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_1749 PF00005 ABC transporter Varpa_1750 PF07687 Peptidase dimerisation domain Varpa_1750 PF01546 Peptidase family M20/M25/M40 Varpa_1752 PF07171 MlrC C-terminus Varpa_1752 PF07364 Metallopeptidase family M81 Varpa_1754 PF02954 Bacterial regulatory protein, Fis family Varpa_1754 PF01590 GAF domain Varpa_1755 PF01799 [2Fe-2S] binding domain Varpa_1755 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_1756 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Varpa_1756 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_1757 PF00941 FAD binding domain in molybdopterin dehydrogenase Varpa_1757 PF03450 CO dehydrogenase flavoprotein C-terminal domain Varpa_1761 PF02625 XdhC and CoxI family Varpa_1761 PF13478 XdhC Rossmann domain Varpa_1762 PF03334 Na+/H+ antiporter subunit Varpa_1763 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Varpa_1765 PF00361 Proton-conducting membrane transporter Varpa_1766 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Varpa_1767 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Varpa_1767 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Varpa_1767 PF13244 Domain of unknown function (DUF4040) Varpa_1767 PF00361 Proton-conducting membrane transporter Varpa_1768 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Varpa_1769 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_1771 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_1773 PF18073 Rubredoxin metal binding domain Varpa_1775 PF00216 Bacterial DNA-binding protein Varpa_1776 PF00575 S1 RNA binding domain Varpa_1778 PF02153 Prephenate dehydrogenase Varpa_1778 PF01842 ACT domain Varpa_1779 PF00800 Prephenate dehydratase Varpa_1779 PF01817 Chorismate mutase type II Varpa_1779 PF01842 ACT domain Varpa_1780 PF00266 Aminotransferase class-V Varpa_1782 PF00521 DNA gyrase/topoisomerase IV, subunit A Varpa_1782 PF03989 DNA gyrase C-terminal domain, beta-propeller Varpa_1783 PF00691 OmpA family Varpa_1785 PF13419 Haloacid dehalogenase-like hydrolase Varpa_1788 PF13847 Methyltransferase domain Varpa_1788 PF10119 Predicted methyltransferase regulatory domain Varpa_1790 PF00849 RNA pseudouridylate synthase Varpa_1790 PF01479 S4 domain Varpa_1795 PF00994 Probable molybdopterin binding domain Varpa_1795 PF02464 Competence-damaged protein Varpa_1795 PF18146 Damage-inducible protein CinA KH domain Varpa_1798 PF00989 PAS fold Varpa_1798 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1799 PF02954 Bacterial regulatory protein, Fis family Varpa_1799 PF00072 Response regulator receiver domain Varpa_1799 PF00158 Sigma-54 interaction domain Varpa_1801 PF03372 Endonuclease/Exonuclease/phosphatase family Varpa_1804 PF13378 Enolase C-terminal domain-like Varpa_1806 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1807 PF00701 Dihydrodipicolinate synthetase family Varpa_1808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1808 PF03466 LysR substrate binding domain Varpa_1810 PF03706 Lysylphosphatidylglycerol synthase TM region Varpa_1813 PF00186 Dihydrofolate reductase Varpa_1814 PF00303 Thymidylate synthase Varpa_1815 PF02979 Nitrile hydratase, alpha chain Varpa_1818 PF02913 FAD linked oxidases, C-terminal domain Varpa_1818 PF01565 FAD binding domain Varpa_1820 PF03631 Virulence factor BrkB Varpa_1822 PF00085 Thioredoxin Varpa_1824 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1825 PF00561 alpha/beta hydrolase fold Varpa_1826 PF01053 Cys/Met metabolism PLP-dependent enzyme Varpa_1829 PF00962 Adenosine/AMP deaminase Varpa_1830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1830 PF03466 LysR substrate binding domain Varpa_1841 PF13018 Extended Signal Peptide of Type V secretion system Varpa_1841 PF03797 Autotransporter beta-domain Varpa_1841 PF02395 Immunoglobulin A1 protease Varpa_1850 PF04055 Radical SAM superfamily Varpa_1851 PF00083 Sugar (and other) transporter Varpa_1852 PF00196 Bacterial regulatory proteins, luxR family Varpa_1852 PF00072 Response regulator receiver domain Varpa_1853 PF00512 His Kinase A (phospho-acceptor) domain Varpa_1853 PF00989 PAS fold Varpa_1853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_1854 PF02321 Outer membrane efflux protein Varpa_1855 PF00529 HlyD membrane-fusion protein of T1SS Varpa_1855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_1856 PF00873 AcrB/AcrD/AcrF family Varpa_1857 PF08359 YsiA-like protein, C-terminal region Varpa_1857 PF00440 Bacterial regulatory proteins, tetR family Varpa_1859 PF13607 Succinyl-CoA ligase like flavodoxin domain Varpa_1859 PF00583 Acetyltransferase (GNAT) family Varpa_1859 PF13380 CoA binding domain Varpa_1860 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Varpa_1860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_1861 PF14525 AraC-binding-like domain Varpa_1863 PF03358 NADPH-dependent FMN reductase Varpa_1864 PF03960 ArsC family Varpa_1865 PF02040 Arsenical pump membrane protein Varpa_1866 PF01022 Bacterial regulatory protein, arsR family Varpa_1869 PF04993 TfoX N-terminal domain Varpa_1869 PF04994 TfoX C-terminal domain Varpa_1870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_1872 PF00756 Putative esterase Varpa_1873 PF00561 alpha/beta hydrolase fold Varpa_1874 PF00107 Zinc-binding dehydrogenase Varpa_1874 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_1875 PF02798 Glutathione S-transferase, N-terminal domain Varpa_1877 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_1877 PF00355 Rieske [2Fe-2S] domain Varpa_1878 PF01220 Dehydroquinase class II Varpa_1879 PF04293 SpoVR like protein Varpa_1880 PF04285 Protein of unknown function (DUF444) Varpa_1881 PF06798 PrkA serine protein kinase C-terminal domain Varpa_1881 PF08298 PrkA AAA domain Varpa_1882 PF01556 DnaJ C terminal domain Varpa_1882 PF00226 DnaJ domain Varpa_1882 PF00684 DnaJ central domain Varpa_1883 PF00012 Hsp70 protein Varpa_1884 PF01025 GrpE Varpa_1885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_1887 PF02666 Phosphatidylserine decarboxylase Varpa_1888 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1889 PF10282 Lactonase, 7-bladed beta-propeller Varpa_1892 PF08666 SAF domain Varpa_1892 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Varpa_1893 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_1895 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_1896 PF08450 SMP-30/Gluconolactonase/LRE-like region Varpa_1897 PF01370 NAD dependent epimerase/dehydratase family Varpa_1898 PF07729 FCD domain Varpa_1898 PF00392 Bacterial regulatory proteins, gntR family Varpa_1899 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1900 PF00701 Dihydrodipicolinate synthetase family Varpa_1902 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1903 PF13378 Enolase C-terminal domain-like Varpa_1903 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Varpa_1905 PF00171 Aldehyde dehydrogenase family Varpa_1906 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_1911 PF00005 ABC transporter Varpa_1912 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_1914 PF13396 Phospholipase_D-nuclease N-terminal Varpa_1914 PF13091 PLD-like domain Varpa_1915 PF13417 Glutathione S-transferase, N-terminal domain Varpa_1916 PF01717 Cobalamin-independent synthase, Catalytic domain Varpa_1917 PF00355 Rieske [2Fe-2S] domain Varpa_1918 PF00392 Bacterial regulatory proteins, gntR family Varpa_1918 PF07729 FCD domain Varpa_1920 PF13458 Periplasmic binding protein Varpa_1923 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_1923 PF00005 ABC transporter Varpa_1924 PF00005 ABC transporter Varpa_1925 PF07519 Tannase and feruloyl esterase Varpa_1928 PF03466 LysR substrate binding domain Varpa_1928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1929 PF00682 HMGL-like Varpa_1930 PF02515 CoA-transferase family III Varpa_1931 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_1932 PF00893 Small Multidrug Resistance protein Varpa_1934 PF07690 Major Facilitator Superfamily Varpa_1936 PF04545 Sigma-70, region 4 Varpa_1936 PF04542 Sigma-70 region 2 Varpa_1936 PF04546 Sigma-70, non-essential region Varpa_1936 PF03979 Sigma-70 factor, region 1.1 Varpa_1936 PF04539 Sigma-70 region 3 Varpa_1936 PF00140 Sigma-70 factor, region 1.2 Varpa_1937 PF01807 CHC2 zinc finger Varpa_1937 PF08275 DNA primase catalytic core, N-terminal domain Varpa_1937 PF08278 DNA primase DnaG DnaB-binding Varpa_1937 PF10410 DnaB-helicase binding domain of primase Varpa_1938 PF03631 Virulence factor BrkB Varpa_1939 PF00106 short chain dehydrogenase Varpa_1940 PF09361 Phasin protein Varpa_1941 PF00850 Histone deacetylase domain Varpa_1942 PF03061 Thioesterase superfamily Varpa_1944 PF05532 CsbD-like Varpa_1945 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Varpa_1945 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Varpa_1947 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_1947 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_1948 PF02646 RmuC family Varpa_1952 PF00440 Bacterial regulatory proteins, tetR family Varpa_1953 PF03641 Possible lysine decarboxylase Varpa_1954 PF09285 Elongation factor P, C-terminal Varpa_1954 PF08207 Elongation factor P (EF-P) KOW-like domain Varpa_1954 PF01132 Elongation factor P (EF-P) OB domain Varpa_1958 PF08459 UvrC Helix-hairpin-helix N-terminal Varpa_1958 PF02151 UvrB/uvrC motif Varpa_1958 PF01541 GIY-YIG catalytic domain Varpa_1959 PF01066 CDP-alcohol phosphatidyltransferase Varpa_1961 PF03466 LysR substrate binding domain Varpa_1961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_1962 PF00561 alpha/beta hydrolase fold Varpa_1963 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_1964 PF00216 Bacterial DNA-binding protein Varpa_1991 PF01555 DNA methylase Varpa_2004 PF00196 Bacterial regulatory proteins, luxR family Varpa_2004 PF00072 Response regulator receiver domain Varpa_2005 PF12697 Alpha/beta hydrolase family Varpa_2006 PF07689 KaiB domain Varpa_2006 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2047 PF00107 Zinc-binding dehydrogenase Varpa_2047 PF14765 Polyketide synthase dehydratase Varpa_2047 PF08659 KR domain Varpa_2047 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_2047 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_2047 PF00698 Acyl transferase domain Varpa_2047 PF00550 Phosphopantetheine attachment site Varpa_2047 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_2047 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_2048 PF01975 Survival protein SurE Varpa_2050 PF01476 LysM domain Varpa_2050 PF01551 Peptidase family M23 Varpa_2051 PF04542 Sigma-70 region 2 Varpa_2051 PF00140 Sigma-70 factor, region 1.2 Varpa_2051 PF04539 Sigma-70 region 3 Varpa_2051 PF04545 Sigma-70, region 4 Varpa_2052 PF05958 tRNA (Uracil-5-)-methyltransferase Varpa_2053 PF01027 Inhibitor of apoptosis-promoting Bax1 Varpa_2054 PF03928 Haem-degrading Varpa_2056 PF02472 Biopolymer transport protein ExbD/TolR Varpa_2057 PF01618 MotA/TolQ/ExbB proton channel family Varpa_2060 PF18331 PKHD-type hydroxylase C-terminal domain Varpa_2060 PF13640 2OG-Fe(II) oxygenase superfamily Varpa_2061 PF07715 TonB-dependent Receptor Plug Domain Varpa_2061 PF00593 TonB dependent receptor Varpa_2062 PF00667 FAD binding domain Varpa_2062 PF00175 Oxidoreductase NAD-binding domain Varpa_2062 PF00258 Flavodoxin Varpa_2063 PF02424 ApbE family Varpa_2067 PF00210 Ferritin-like domain Varpa_2068 PF10417 C-terminal domain of 1-Cys peroxiredoxin Varpa_2068 PF00578 AhpC/TSA family Varpa_2069 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_2069 PF13192 Thioredoxin domain Varpa_2070 PF07715 TonB-dependent Receptor Plug Domain Varpa_2070 PF00593 TonB dependent receptor Varpa_2071 PF05171 Haemin-degrading HemS.ChuX domain Varpa_2074 PF01032 FecCD transport family Varpa_2075 PF00005 ABC transporter Varpa_2076 PF03618 Kinase/pyrophosphorylase Varpa_2077 PF00391 PEP-utilising enzyme, mobile domain Varpa_2077 PF02896 PEP-utilising enzyme, TIM barrel domain Varpa_2077 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Varpa_2079 PF01250 Ribosomal protein S6 Varpa_2081 PF01084 Ribosomal protein S18 Varpa_2082 PF03948 Ribosomal protein L9, C-terminal domain Varpa_2082 PF01281 Ribosomal protein L9, N-terminal domain Varpa_2083 PF00772 DnaB-like helicase N terminal domain Varpa_2083 PF03796 DnaB-like helicase C terminal domain Varpa_2087 PF01878 EVE domain Varpa_2089 PF13638 PIN domain Varpa_2089 PF02562 PhoH-like protein Varpa_2090 PF00578 AhpC/TSA family Varpa_2092 PF00155 Aminotransferase class I and II Varpa_2093 PF01842 ACT domain Varpa_2093 PF00742 Homoserine dehydrogenase Varpa_2093 PF03447 Homoserine dehydrogenase, NAD binding domain Varpa_2094 PF14821 Threonine synthase N terminus Varpa_2094 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_2095 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Varpa_2096 PF00994 Probable molybdopterin binding domain Varpa_2096 PF03454 MoeA C-terminal region (domain IV) Varpa_2096 PF03453 MoeA N-terminal region (domain I and II) Varpa_2098 PF00701 Dihydrodipicolinate synthetase family Varpa_2099 PF02391 MoaE protein Varpa_2100 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2101 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_2101 PF17871 AAA lid domain Varpa_2101 PF07724 AAA domain (Cdc48 subfamily) Varpa_2101 PF02861 Clp amino terminal domain, pathogenicity island component Varpa_2101 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_2103 PF00501 AMP-binding enzyme Varpa_2104 PF00005 ABC transporter Varpa_2108 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_2108 PF00005 ABC transporter Varpa_2109 PF00440 Bacterial regulatory proteins, tetR family Varpa_2109 PF17754 MftR C-terminal domain Varpa_2110 PF02803 Thiolase, C-terminal domain Varpa_2110 PF00108 Thiolase, N-terminal domain Varpa_2111 PF00472 RF-1 domain Varpa_2112 PF13417 Glutathione S-transferase, N-terminal domain Varpa_2113 PF00107 Zinc-binding dehydrogenase Varpa_2113 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_2116 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2117 PF00005 ABC transporter Varpa_2117 PF08402 TOBE domain Varpa_2118 PF00135 Carboxylesterase family Varpa_2119 PF02515 CoA-transferase family III Varpa_2120 PF00378 Enoyl-CoA hydratase/isomerase Varpa_2124 PF03466 LysR substrate binding domain Varpa_2124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2125 PF01740 STAS domain Varpa_2125 PF00916 Sulfate permease family Varpa_2128 PF03466 LysR substrate binding domain Varpa_2128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2129 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_2129 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_2130 PF00550 Phosphopantetheine attachment site Varpa_2136 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2137 PF00589 Phage integrase family Varpa_2137 PF02899 Phage integrase, N-terminal SAM-like domain Varpa_2138 PF03466 LysR substrate binding domain Varpa_2138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2140 PF00005 ABC transporter Varpa_2141 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2142 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Varpa_2143 PF00465 Iron-containing alcohol dehydrogenase Varpa_2144 PF00171 Aldehyde dehydrogenase family Varpa_2146 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2147 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2149 PF02803 Thiolase, C-terminal domain Varpa_2149 PF00108 Thiolase, N-terminal domain Varpa_2152 PF04305 Protein of unknown function (DUF455) Varpa_2153 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_2154 PF01430 Hsp33 protein Varpa_2158 PF08479 POTRA domain, ShlB-type Varpa_2158 PF17287 POTRA domain Varpa_2158 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Varpa_2165 PF04973 Nicotinamide mononucleotide transporter Varpa_2166 PF04977 Septum formation initiator Varpa_2167 PF03952 Enolase, N-terminal domain Varpa_2167 PF00113 Enolase, C-terminal TIM barrel domain Varpa_2169 PF00793 DAHP synthetase I family Varpa_2169 PF00793 DAHP synthetase I family Varpa_2170 PF06418 CTP synthase N-terminus Varpa_2170 PF00117 Glutamine amidotransferase class-I Varpa_2171 PF02441 Flavoprotein Varpa_2171 PF04127 DNA / pantothenate metabolism flavoprotein Varpa_2173 PF00692 dUTPase Varpa_2175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_2176 PF08007 Cupin superfamily protein Varpa_2179 PF00753 Metallo-beta-lactamase superfamily Varpa_2180 PF06804 NlpB/DapX lipoprotein Varpa_2181 PF00701 Dihydrodipicolinate synthetase family Varpa_2185 PF00986 DNA gyrase B subunit, carboxyl terminus Varpa_2185 PF01751 Toprim domain Varpa_2185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2185 PF00204 DNA gyrase B Varpa_2186 PF01464 Transglycosylase SLT domain Varpa_2186 PF10145 Phage-related minor tail protein Varpa_2186 PF01551 Peptidase family M23 Varpa_2187 PF00521 DNA gyrase/topoisomerase IV, subunit A Varpa_2189 PF12706 Beta-lactamase superfamily domain Varpa_2192 PF00857 Isochorismatase family Varpa_2195 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2196 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2198 PF00005 ABC transporter Varpa_2200 PF00294 pfkB family carbohydrate kinase Varpa_2201 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_2201 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_2202 PF00356 Bacterial regulatory proteins, lacI family Varpa_2203 PF00732 GMC oxidoreductase Varpa_2203 PF05199 GMC oxidoreductase Varpa_2204 PF01168 Alanine racemase, N-terminal domain Varpa_2204 PF14031 Putative serine dehydratase domain Varpa_2205 PF13419 Haloacid dehalogenase-like hydrolase Varpa_2206 PF03466 LysR substrate binding domain Varpa_2206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2209 PF08379 Bacterial transglutaminase-like N-terminal region Varpa_2209 PF01841 Transglutaminase-like superfamily Varpa_2210 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_2211 PF14403 Circularly permuted ATP-grasp type 2 Varpa_2211 PF04168 A predicted alpha-helical domain with a conserved ER motif. Varpa_2213 PF03772 Competence protein Varpa_2213 PF00753 Metallo-beta-lactamase superfamily Varpa_2214 PF00378 Enoyl-CoA hydratase/isomerase Varpa_2215 PF14403 Circularly permuted ATP-grasp type 2 Varpa_2219 PF08019 Phosphoethanolamine transferase EptA/EptB Varpa_2219 PF00884 Sulfatase Varpa_2221 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Varpa_2221 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_2222 PF00455 DeoR C terminal sensor domain Varpa_2222 PF08220 DeoR-like helix-turn-helix domain Varpa_2223 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Varpa_2223 PF01266 FAD dependent oxidoreductase Varpa_2224 PF00005 ABC transporter Varpa_2225 PF17912 MalK OB fold domain Varpa_2225 PF00005 ABC transporter Varpa_2226 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2227 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2234 PF00005 ABC transporter Varpa_2237 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_2237 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_2240 PF13406 Transglycosylase SLT domain Varpa_2241 PF13559 Domain of unknown function (DUF4129) Varpa_2241 PF11992 Domain of unknown function (DUF3488) Varpa_2241 PF01841 Transglutaminase-like superfamily Varpa_2243 PF07726 ATPase family associated with various cellular activities (AAA) Varpa_2243 PF17863 AAA lid domain Varpa_2244 PF00850 Histone deacetylase domain Varpa_2245 PF12795 Mechanosensitive ion channel porin domain Varpa_2245 PF00924 Mechanosensitive ion channel Varpa_2245 PF12794 Mechanosensitive ion channel inner membrane domain 1 Varpa_2246 PF01012 Electron transfer flavoprotein domain Varpa_2247 PF01012 Electron transfer flavoprotein domain Varpa_2247 PF00766 Electron transfer flavoprotein FAD-binding domain Varpa_2248 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_2248 PF12806 Acetyl-CoA dehydrogenase C-terminal like Varpa_2248 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_2248 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_2252 PF13193 AMP-binding enzyme C-terminal domain Varpa_2252 PF00501 AMP-binding enzyme Varpa_2254 PF13452 N-terminal half of MaoC dehydratase Varpa_2257 PF00378 Enoyl-CoA hydratase/isomerase Varpa_2262 PF03795 YCII-related domain Varpa_2264 PF07690 Major Facilitator Superfamily Varpa_2266 PF01264 Chorismate synthase Varpa_2268 PF13407 Periplasmic binding protein domain Varpa_2269 PF02653 Branched-chain amino acid transport system / permease component Varpa_2270 PF00005 ABC transporter Varpa_2273 PF02653 Branched-chain amino acid transport system / permease component Varpa_2274 PF00005 ABC transporter Varpa_2275 PF08450 SMP-30/Gluconolactonase/LRE-like region Varpa_2276 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Varpa_2276 PF00356 Bacterial regulatory proteins, lacI family Varpa_2277 PF00107 Zinc-binding dehydrogenase Varpa_2277 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_2278 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_2278 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_2280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_2280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_2282 PF11008 Protein of unknown function (DUF2846) Varpa_2286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2286 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2286 PF08521 Two-component sensor kinase N-terminal Varpa_2287 PF00072 Response regulator receiver domain Varpa_2287 PF00486 Transcriptional regulatory protein, C terminal Varpa_2288 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2289 PF00672 HAMP domain Varpa_2289 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2290 PF00486 Transcriptional regulatory protein, C terminal Varpa_2290 PF00072 Response regulator receiver domain Varpa_2291 PF12951 Passenger-associated-transport-repeat Varpa_2292 PF01614 Bacterial transcriptional regulator Varpa_2292 PF09339 IclR helix-turn-helix domain Varpa_2293 PF01488 Shikimate / quinate 5-dehydrogenase Varpa_2293 PF08501 Shikimate dehydrogenase substrate binding domain Varpa_2293 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Varpa_2294 PF01488 Shikimate / quinate 5-dehydrogenase Varpa_2294 PF08501 Shikimate dehydrogenase substrate binding domain Varpa_2294 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Varpa_2295 PF10397 Adenylosuccinate lyase C-terminus Varpa_2295 PF00206 Lyase Varpa_2297 PF07690 Major Facilitator Superfamily Varpa_2298 PF00561 alpha/beta hydrolase fold Varpa_2299 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_2300 PF00083 Sugar (and other) transporter Varpa_2300 PF07690 Major Facilitator Superfamily Varpa_2304 PF00561 alpha/beta hydrolase fold Varpa_2317 PF01527 Transposase Varpa_2319 PF01527 Transposase Varpa_2321 PF13302 Acetyltransferase (GNAT) domain Varpa_2322 PF03466 LysR substrate binding domain Varpa_2322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2324 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Varpa_2326 PF03060 Nitronate monooxygenase Varpa_2330 PF02347 Glycine cleavage system P-protein Varpa_2331 PF01597 Glycine cleavage H-protein Varpa_2332 PF01571 Aminomethyltransferase folate-binding domain Varpa_2332 PF08669 Glycine cleavage T-protein C-terminal barrel domain Varpa_2336 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_2338 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_2342 PF03061 Thioesterase superfamily Varpa_2344 PF08521 Two-component sensor kinase N-terminal Varpa_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2344 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2345 PF00486 Transcriptional regulatory protein, C terminal Varpa_2345 PF00072 Response regulator receiver domain Varpa_2347 PF01569 PAP2 superfamily Varpa_2348 PF08019 Phosphoethanolamine transferase EptA/EptB Varpa_2348 PF00884 Sulfatase Varpa_2355 PF14497 Glutathione S-transferase, C-terminal domain Varpa_2355 PF02798 Glutathione S-transferase, N-terminal domain Varpa_2359 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Varpa_2360 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Varpa_2361 PF13520 Amino acid permease Varpa_2362 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_2362 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Varpa_2364 PF04349 Periplasmic glucan biosynthesis protein, MdoG Varpa_2366 PF00583 Acetyltransferase (GNAT) family Varpa_2376 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_2379 PF00196 Bacterial regulatory proteins, luxR family Varpa_2379 PF00072 Response regulator receiver domain Varpa_2380 PF01144 Coenzyme A transferase Varpa_2381 PF01144 Coenzyme A transferase Varpa_2383 PF00155 Aminotransferase class I and II Varpa_2386 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2386 PF03466 LysR substrate binding domain Varpa_2387 PF00171 Aldehyde dehydrogenase family Varpa_2390 PF00378 Enoyl-CoA hydratase/isomerase Varpa_2391 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_2391 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_2394 PF01425 Amidase Varpa_2395 PF03466 LysR substrate binding domain Varpa_2395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2396 PF03466 LysR substrate binding domain Varpa_2396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2397 PF01717 Cobalamin-independent synthase, Catalytic domain Varpa_2397 PF08267 Cobalamin-independent synthase, N-terminal domain Varpa_2399 PF01381 Helix-turn-helix Varpa_2399 PF06114 IrrE N-terminal-like domain Varpa_2399 PF09856 Predicted transcriptional regulator (DUF2083) Varpa_2402 PF03352 Methyladenine glycosylase Varpa_2404 PF07687 Peptidase dimerisation domain Varpa_2404 PF01546 Peptidase family M20/M25/M40 Varpa_2406 PF01556 DnaJ C terminal domain Varpa_2406 PF00226 DnaJ domain Varpa_2407 PF00106 short chain dehydrogenase Varpa_2407 PF00300 Histidine phosphatase superfamily (branch 1) Varpa_2408 PF01804 Penicillin amidase Varpa_2409 PF00043 Glutathione S-transferase, C-terminal domain Varpa_2409 PF02798 Glutathione S-transferase, N-terminal domain Varpa_2410 PF01066 CDP-alcohol phosphatidyltransferase Varpa_2411 PF00117 Glutamine amidotransferase class-I Varpa_2411 PF00958 GMP synthase C terminal domain Varpa_2411 PF02540 NAD synthase Varpa_2414 PF01022 Bacterial regulatory protein, arsR family Varpa_2416 PF03006 Haemolysin-III related Varpa_2418 PF00155 Aminotransferase class I and II Varpa_2418 PF00392 Bacterial regulatory proteins, gntR family Varpa_2421 PF01661 Macro domain Varpa_2422 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_2424 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_2426 PF10396 GTP-binding protein TrmE N-terminus Varpa_2426 PF12631 MnmE helical domain Varpa_2426 PF01926 50S ribosome-binding GTPase Varpa_2427 PF11067 Protein of unknown function (DUF2868) Varpa_2430 PF00440 Bacterial regulatory proteins, tetR family Varpa_2432 PF00005 ABC transporter Varpa_2432 PF00664 ABC transporter transmembrane region Varpa_2433 PF03466 LysR substrate binding domain Varpa_2433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2434 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Varpa_2436 PF01292 Prokaryotic cytochrome b561 Varpa_2442 PF02811 PHP domain Varpa_2442 PF07733 Bacterial DNA polymerase III alpha NTPase domain Varpa_2442 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Varpa_2442 PF14579 Helix-hairpin-helix motif Varpa_2448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2448 PF03466 LysR substrate binding domain Varpa_2450 PF03466 LysR substrate binding domain Varpa_2450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2451 PF02515 CoA-transferase family III Varpa_2452 PF00682 HMGL-like Varpa_2453 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2454 PF00135 Carboxylesterase family Varpa_2455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Varpa_2455 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_2455 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Varpa_2456 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Varpa_2456 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Varpa_2456 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Varpa_2458 PF00571 CBS domain Varpa_2459 PF00440 Bacterial regulatory proteins, tetR family Varpa_2460 PF00107 Zinc-binding dehydrogenase Varpa_2460 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_2462 PF00561 alpha/beta hydrolase fold Varpa_2465 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_2466 PF13458 Periplasmic binding protein Varpa_2467 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Varpa_2467 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Varpa_2467 PF18267 Rubredoxin NAD+ reductase C-terminal domain Varpa_2467 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_2467 PF04324 BFD-like [2Fe-2S] binding domain Varpa_2468 PF13806 Rieske-like [2Fe-2S] domain Varpa_2469 PF01226 Formate/nitrite transporter Varpa_2470 PF00069 Protein kinase domain Varpa_2470 PF03793 PASTA domain Varpa_2475 PF00005 ABC transporter Varpa_2476 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2479 PF02910 Fumarate reductase flavoprotein C-term Varpa_2479 PF00890 FAD binding domain Varpa_2482 PF02798 Glutathione S-transferase, N-terminal domain Varpa_2482 PF00043 Glutathione S-transferase, C-terminal domain Varpa_2484 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_2484 PF13192 Thioredoxin domain Varpa_2486 PF13089 Polyphosphate kinase N-terminal domain Varpa_2486 PF17941 Polyphosphate kinase C-terminal domain 1 Varpa_2486 PF13090 Polyphosphate kinase C-terminal domain 2 Varpa_2486 PF02503 Polyphosphate kinase middle domain Varpa_2488 PF02541 Ppx/GppA phosphatase family Varpa_2489 PF12849 PBP superfamily domain Varpa_2490 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2491 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2492 PF00005 ABC transporter Varpa_2493 PF01895 PhoU domain Varpa_2494 PF00072 Response regulator receiver domain Varpa_2494 PF00486 Transcriptional regulatory protein, C terminal Varpa_2495 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2495 PF00989 PAS fold Varpa_2495 PF11808 Phosphate regulon sensor protein PhoR Varpa_2495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2496 PF01554 MatE Varpa_2498 PF01197 Ribosomal protein L31 Varpa_2499 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Varpa_2499 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Varpa_2500 PF07498 Rho termination factor, N-terminal domain Varpa_2500 PF07497 Rho termination factor, RNA-binding domain Varpa_2500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Varpa_2501 PF00085 Thioredoxin Varpa_2503 PF12705 PD-(D/E)XK nuclease superfamily Varpa_2503 PF00580 UvrD/REP helicase N-terminal domain Varpa_2503 PF13361 UvrD-like helicase C-terminal domain Varpa_2505 PF12169 DNA polymerase III subunits gamma and tau domain III Varpa_2505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Varpa_2505 PF12170 DNA polymerase III tau subunit V interacting with alpha Varpa_2506 PF02575 YbaB/EbfC DNA-binding family Varpa_2507 PF13662 Toprim domain Varpa_2507 PF02132 RecR protein Varpa_2510 PF00005 ABC transporter Varpa_2511 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2512 PF02254 TrkA-N domain Varpa_2512 PF00999 Sodium/hydrogen exchanger family Varpa_2513 PF01476 LysM domain Varpa_2513 PF01464 Transglycosylase SLT domain Varpa_2514 PF16123 Hydroxyacylglutathione hydrolase C-terminus Varpa_2514 PF00753 Metallo-beta-lactamase superfamily Varpa_2515 PF08241 Methyltransferase domain Varpa_2516 PF00075 RNase H Varpa_2517 PF03453 MoeA N-terminal region (domain I and II) Varpa_2517 PF03454 MoeA C-terminal region (domain IV) Varpa_2517 PF00994 Probable molybdopterin binding domain Varpa_2518 PF12804 MobA-like NTP transferase domain Varpa_2519 PF06463 Molybdenum Cofactor Synthesis C Varpa_2519 PF04055 Radical SAM superfamily Varpa_2520 PF00144 Beta-lactamase Varpa_2522 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Varpa_2522 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Varpa_2523 PF02535 ZIP Zinc transporter Varpa_2524 PF00171 Aldehyde dehydrogenase family Varpa_2526 PF13091 PLD-like domain Varpa_2536 PF01037 Lrp/AsnC ligand binding domain Varpa_2537 PF03435 Saccharopine dehydrogenase NADP binding domain Varpa_2537 PF16653 Saccharopine dehydrogenase C-terminal domain Varpa_2539 PF03030 Inorganic H+ pyrophosphatase Varpa_2540 PF00719 Inorganic pyrophosphatase Varpa_2543 PF00795 Carbon-nitrogen hydrolase Varpa_2543 PF02540 NAD synthase Varpa_2544 PF00543 Nitrogen regulatory protein P-II Varpa_2545 PF03641 Possible lysine decarboxylase Varpa_2546 PF01219 Prokaryotic diacylglycerol kinase Varpa_2551 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_2551 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_2551 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_2552 PF10369 Small subunit of acetolactate synthase Varpa_2554 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Varpa_2554 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Varpa_2555 PF01066 CDP-alcohol phosphatidyltransferase Varpa_2556 PF00682 HMGL-like Varpa_2556 PF08502 LeuA allosteric (dimerisation) domain Varpa_2557 PF00682 HMGL-like Varpa_2557 PF08502 LeuA allosteric (dimerisation) domain Varpa_2558 PF00768 D-alanyl-D-alanine carboxypeptidase Varpa_2559 PF01614 Bacterial transcriptional regulator Varpa_2559 PF09339 IclR helix-turn-helix domain Varpa_2560 PF04377 Arginine-tRNA-protein transferase, C terminus Varpa_2560 PF04376 Arginine-tRNA-protein transferase, N terminus Varpa_2561 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Varpa_2562 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Varpa_2562 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_2563 PF12833 Helix-turn-helix domain Varpa_2566 PF01494 FAD binding domain Varpa_2567 PF09339 IclR helix-turn-helix domain Varpa_2567 PF01614 Bacterial transcriptional regulator Varpa_2568 PF00072 Response regulator receiver domain Varpa_2568 PF00486 Transcriptional regulatory protein, C terminal Varpa_2569 PF08521 Two-component sensor kinase N-terminal Varpa_2569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2569 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2570 PF13180 PDZ domain Varpa_2570 PF17820 PDZ domain Varpa_2573 PF00072 Response regulator receiver domain Varpa_2573 PF00196 Bacterial regulatory proteins, luxR family Varpa_2577 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2578 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Varpa_2578 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Varpa_2579 PF03737 Aldolase/RraA Varpa_2580 PF04909 Amidohydrolase Varpa_2581 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2581 PF03466 LysR substrate binding domain Varpa_2584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2584 PF03466 LysR substrate binding domain Varpa_2585 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_2585 PF00107 Zinc-binding dehydrogenase Varpa_2586 PF12833 Helix-turn-helix domain Varpa_2586 PF14525 AraC-binding-like domain Varpa_2588 PF01738 Dienelactone hydrolase family Varpa_2590 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Varpa_2590 PF00355 Rieske [2Fe-2S] domain Varpa_2591 PF00866 Ring hydroxylating beta subunit Varpa_2594 PF00753 Metallo-beta-lactamase superfamily Varpa_2598 PF01551 Peptidase family M23 Varpa_2598 PF01476 LysM domain Varpa_2601 PF07715 TonB-dependent Receptor Plug Domain Varpa_2601 PF00593 TonB dependent receptor Varpa_2602 PF02581 Thiamine monophosphate synthase Varpa_2603 PF05690 Thiazole biosynthesis protein ThiG Varpa_2605 PF01266 FAD dependent oxidoreductase Varpa_2606 PF08543 Phosphomethylpyrimidine kinase Varpa_2608 PF00211 Adenylate and Guanylate cyclase catalytic domain Varpa_2608 PF00672 HAMP domain Varpa_2608 PF02743 Cache domain Varpa_2610 PF00202 Aminotransferase class-III Varpa_2612 PF00037 4Fe-4S binding domain Varpa_2612 PF11953 Domain of unknown function (DUF3470) Varpa_2613 PF00009 Elongation factor Tu GTP binding domain Varpa_2614 PF01507 Phosphoadenosine phosphosulfate reductase family Varpa_2615 PF01507 Phosphoadenosine phosphosulfate reductase family Varpa_2620 PF03576 Peptidase family S58 Varpa_2621 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2621 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_2622 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2623 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_2624 PF00005 ABC transporter Varpa_2624 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_2625 PF01112 Asparaginase Varpa_2632 PF00248 Aldo/keto reductase family Varpa_2633 PF03466 LysR substrate binding domain Varpa_2633 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2634 PF01266 FAD dependent oxidoreductase Varpa_2636 PF01425 Amidase Varpa_2637 PF01522 Polysaccharide deacetylase Varpa_2638 PF07690 Major Facilitator Superfamily Varpa_2642 PF07683 Cobalamin synthesis protein cobW C-terminal domain Varpa_2642 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_2644 PF00392 Bacterial regulatory proteins, gntR family Varpa_2644 PF07702 UTRA domain Varpa_2645 PF00274 Fructose-bisphosphate aldolase class-I Varpa_2646 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Varpa_2646 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Varpa_2647 PF00294 pfkB family carbohydrate kinase Varpa_2648 PF13407 Periplasmic binding protein domain Varpa_2650 PF13419 Haloacid dehalogenase-like hydrolase Varpa_2651 PF02653 Branched-chain amino acid transport system / permease component Varpa_2652 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_2653 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_2654 PF08220 DeoR-like helix-turn-helix domain Varpa_2654 PF00455 DeoR C terminal sensor domain Varpa_2655 PF01625 Peptide methionine sulfoxide reductase Varpa_2657 PF00174 Oxidoreductase molybdopterin binding domain Varpa_2658 PF01292 Prokaryotic cytochrome b561 Varpa_2659 PF00486 Transcriptional regulatory protein, C terminal Varpa_2659 PF00072 Response regulator receiver domain Varpa_2660 PF18698 Histidine kinase sensor domain Varpa_2660 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2660 PF00989 PAS fold Varpa_2660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2660 PF00672 HAMP domain Varpa_2661 PF00378 Enoyl-CoA hydratase/isomerase Varpa_2665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Varpa_2665 PF01266 FAD dependent oxidoreductase Varpa_2666 PF04362 Bacterial Fe(2+) trafficking Varpa_2668 PF03358 NADPH-dependent FMN reductase Varpa_2670 PF09084 NMT1/THI5 like Varpa_2671 PF00296 Luciferase-like monooxygenase Varpa_2672 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2673 PF09084 NMT1/THI5 like Varpa_2674 PF00005 ABC transporter Varpa_2675 PF01053 Cys/Met metabolism PLP-dependent enzyme Varpa_2676 PF00881 Nitroreductase family Varpa_2677 PF03459 TOBE domain Varpa_2680 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Varpa_2682 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_2685 PF00266 Aminotransferase class-V Varpa_2686 PF04820 Tryptophan halogenase Varpa_2687 PF07804 HipA-like C-terminal domain Varpa_2689 PF08546 Ketopantoate reductase PanE/ApbA C terminal Varpa_2689 PF02558 Ketopantoate reductase PanE/ApbA Varpa_2690 PF03358 NADPH-dependent FMN reductase Varpa_2691 PF02525 Flavodoxin-like fold Varpa_2692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2692 PF03466 LysR substrate binding domain Varpa_2693 PF00578 AhpC/TSA family Varpa_2693 PF10417 C-terminal domain of 1-Cys peroxiredoxin Varpa_2696 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2697 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2698 PF00005 ABC transporter Varpa_2698 PF17850 CysA C-terminal regulatory domain Varpa_2698 PF12857 TOBE-like domain Varpa_2699 PF02600 Disulfide bond formation protein DsbB Varpa_2700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_2701 PF00005 ABC transporter Varpa_2701 PF12704 MacB-like periplasmic core domain Varpa_2701 PF02687 FtsX-like permease family Varpa_2702 PF02321 Outer membrane efflux protein Varpa_2706 PF01209 ubiE/COQ5 methyltransferase family Varpa_2707 PF01709 Transcriptional regulator Varpa_2708 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Varpa_2708 PF02843 Phosphoribosylglycinamide synthetase, C domain Varpa_2708 PF02844 Phosphoribosylglycinamide synthetase, N domain Varpa_2709 PF01218 Coproporphyrinogen III oxidase Varpa_2710 PF01467 Cytidylyltransferase-like Varpa_2712 PF02590 Predicted SPOUT methyltransferase Varpa_2714 PF02545 Maf-like protein Varpa_2715 PF00575 S1 RNA binding domain Varpa_2715 PF10150 Ribonuclease E/G family Varpa_2716 PF00664 ABC transporter transmembrane region Varpa_2716 PF00005 ABC transporter Varpa_2717 PF07676 WD40-like Beta Propeller Repeat Varpa_2717 PF04052 TolB amino-terminal domain Varpa_2718 PF00691 OmpA family Varpa_2720 PF00899 ThiF family Varpa_2722 PF00589 Phage integrase family Varpa_2722 PF13356 Arm DNA-binding domain Varpa_2756 PF00565 Staphylococcal nuclease homologue Varpa_2769 PF01527 Transposase Varpa_2773 PF00271 Helicase conserved C-terminal domain Varpa_2773 PF00570 HRDC domain Varpa_2773 PF00270 DEAD/DEAH box helicase Varpa_2773 PF16124 RecQ zinc-binding Varpa_2773 PF09382 RQC domain Varpa_2783 PF13188 PAS domain Varpa_2783 PF00072 Response regulator receiver domain Varpa_2783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2783 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2783 PF08448 PAS fold Varpa_2784 PF18073 Rubredoxin metal binding domain Varpa_2787 PF00753 Metallo-beta-lactamase superfamily Varpa_2790 PF01593 Flavin containing amine oxidoreductase Varpa_2795 PF02735 Ku70/Ku80 beta-barrel domain Varpa_2796 PF13298 DNA polymerase Ligase (LigD) Varpa_2796 PF01068 ATP dependent DNA ligase domain Varpa_2796 PF04679 ATP dependent DNA ligase C terminal region Varpa_2798 PF02735 Ku70/Ku80 beta-barrel domain Varpa_2800 PF00248 Aldo/keto reductase family Varpa_2801 PF03466 LysR substrate binding domain Varpa_2801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2806 PF02469 Fasciclin domain Varpa_2811 PF05175 Methyltransferase small domain Varpa_2812 PF07687 Peptidase dimerisation domain Varpa_2812 PF01546 Peptidase family M20/M25/M40 Varpa_2813 PF00437 Type II/IV secretion system protein Varpa_2814 PF14602 Hexapeptide repeat of succinyl-transferase Varpa_2814 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_2814 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Varpa_2815 PF00155 Aminotransferase class I and II Varpa_2817 PF01810 LysE type translocator Varpa_2818 PF00583 Acetyltransferase (GNAT) family Varpa_2818 PF00696 Amino acid kinase family Varpa_2819 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_2819 PF17862 AAA+ lid domain Varpa_2819 PF06480 FtsH Extracellular Varpa_2819 PF01434 Peptidase family M41 Varpa_2820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Varpa_2820 PF04408 Helicase associated domain (HA2) Varpa_2820 PF11898 Domain of unknown function (DUF3418) Varpa_2820 PF00270 DEAD/DEAH box helicase Varpa_2820 PF00271 Helicase conserved C-terminal domain Varpa_2824 PF00155 Aminotransferase class I and II Varpa_2825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2825 PF03466 LysR substrate binding domain Varpa_2827 PF03739 Lipopolysaccharide export system permease LptF/LptG Varpa_2829 PF00883 Cytosol aminopeptidase family, catalytic domain Varpa_2829 PF02789 Cytosol aminopeptidase family, N-terminal domain Varpa_2832 PF13458 Periplasmic binding protein Varpa_2834 PF00665 Integrase core domain Varpa_2834 PF13333 Integrase core domain Varpa_2834 PF13276 HTH-like domain Varpa_2837 PF01145 SPFH domain / Band 7 family Varpa_2839 PF01276 Orn/Lys/Arg decarboxylase, major domain Varpa_2839 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Varpa_2839 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Varpa_2840 PF14743 DNA ligase OB-like domain Varpa_2840 PF01068 ATP dependent DNA ligase domain Varpa_2842 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_2843 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2844 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_2844 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_2845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_2845 PF00005 ABC transporter Varpa_2846 PF06779 Uncharacterised MFS-type transporter YbfB Varpa_2847 PF02576 RimP N-terminal domain Varpa_2848 PF08529 NusA N-terminal domain Varpa_2848 PF13184 NusA-like KH domain Varpa_2849 PF08364 Bacterial translation initiation factor IF-2 associated region Varpa_2849 PF04760 Translation initiation factor IF-2, N-terminal region Varpa_2849 PF11987 Translation-initiation factor 2 Varpa_2849 PF00009 Elongation factor Tu GTP binding domain Varpa_2850 PF02033 Ribosome-binding factor A Varpa_2851 PF16198 tRNA pseudouridylate synthase B C-terminal domain Varpa_2851 PF01509 TruB family pseudouridylate synthase (N terminal domain) Varpa_2857 PF08281 Sigma-70, region 4 Varpa_2857 PF04542 Sigma-70 region 2 Varpa_2859 PF01668 SmpB protein Varpa_2860 PF03364 Polyketide cyclase / dehydrase and lipid transport Varpa_2861 PF03658 RnfH family Ubiquitin Varpa_2863 PF00478 IMP dehydrogenase / GMP reductase domain Varpa_2863 PF00571 CBS domain Varpa_2866 PF00958 GMP synthase C terminal domain Varpa_2866 PF00117 Glutamine amidotransferase class-I Varpa_2866 PF02540 NAD synthase Varpa_2869 PF16363 GDP-mannose 4,6 dehydratase Varpa_2870 PF01050 Mannose-6-phosphate isomerase Varpa_2870 PF00483 Nucleotidyl transferase Varpa_2872 PF00072 Response regulator receiver domain Varpa_2872 PF00196 Bacterial regulatory proteins, luxR family Varpa_2874 PF16363 GDP-mannose 4,6 dehydratase Varpa_2875 PF00534 Glycosyl transferases group 1 Varpa_2875 PF13579 Glycosyl transferase 4-like domain Varpa_2881 PF01370 NAD dependent epimerase/dehydratase family Varpa_2882 PF02397 Bacterial sugar transferase Varpa_2883 PF02706 Chain length determinant protein Varpa_2883 PF13614 AAA domain Varpa_2883 PF13807 G-rich domain on putative tyrosine kinase Varpa_2884 PF10531 SLBB domain Varpa_2884 PF02563 Polysaccharide biosynthesis/export protein Varpa_2887 PF00975 Thioesterase domain Varpa_2887 PF00668 Condensation domain Varpa_2887 PF00550 Phosphopantetheine attachment site Varpa_2887 PF00501 AMP-binding enzyme Varpa_2887 PF13193 AMP-binding enzyme C-terminal domain Varpa_2888 PF13193 AMP-binding enzyme C-terminal domain Varpa_2888 PF00668 Condensation domain Varpa_2888 PF00550 Phosphopantetheine attachment site Varpa_2888 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_2888 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_2888 PF00202 Aminotransferase class-III Varpa_2888 PF00501 AMP-binding enzyme Varpa_2888 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_2890 PF02954 Bacterial regulatory protein, Fis family Varpa_2890 PF00072 Response regulator receiver domain Varpa_2890 PF00158 Sigma-54 interaction domain Varpa_2896 PF04717 Type VI secretion system, phage-baseplate injector Varpa_2906 PF17871 AAA lid domain Varpa_2906 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_2906 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_2906 PF07724 AAA domain (Cdc48 subfamily) Varpa_2907 PF04717 Type VI secretion system, phage-baseplate injector Varpa_2908 PF04717 Type VI secretion system, phage-baseplate injector Varpa_2909 PF04717 Type VI secretion system, phage-baseplate injector Varpa_2920 PF00691 OmpA family Varpa_2920 PF13677 Membrane MotB of proton-channel complex MotA/MotB Varpa_2923 PF00069 Protein kinase domain Varpa_2923 PF13360 PQQ-like domain Varpa_2924 PF03466 LysR substrate binding domain Varpa_2924 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2925 PF00561 alpha/beta hydrolase fold Varpa_2926 PF00106 short chain dehydrogenase Varpa_2928 PF05726 Pirin C-terminal cupin domain Varpa_2928 PF02678 Pirin Varpa_2929 PF03466 LysR substrate binding domain Varpa_2929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_2931 PF03466 LysR substrate binding domain Varpa_2932 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_2932 PF00175 Oxidoreductase NAD-binding domain Varpa_2932 PF00970 Oxidoreductase FAD-binding domain Varpa_2933 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Varpa_2933 PF00355 Rieske [2Fe-2S] domain Varpa_2934 PF13577 SnoaL-like domain Varpa_2936 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_2937 PF00355 Rieske [2Fe-2S] domain Varpa_2940 PF13426 PAS domain Varpa_2940 PF08448 PAS fold Varpa_2940 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2940 PF00072 Response regulator receiver domain Varpa_2941 PF00196 Bacterial regulatory proteins, luxR family Varpa_2941 PF00072 Response regulator receiver domain Varpa_2946 PF14437 MafB19-like deaminase Varpa_2947 PF17676 LD-carboxypeptidase C-terminal domain Varpa_2947 PF02016 LD-carboxypeptidase N-terminal domain Varpa_2949 PF16701 Adenylate cyclase regulatory domain Varpa_2949 PF00211 Adenylate and Guanylate cyclase catalytic domain Varpa_2956 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2957 PF01339 CheB methylesterase Varpa_2958 PF01739 CheR methyltransferase, SAM binding domain Varpa_2958 PF03705 CheR methyltransferase, all-alpha domain Varpa_2959 PF00512 His Kinase A (phospho-acceptor) domain Varpa_2959 PF01627 Hpt domain Varpa_2959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_2959 PF00672 HAMP domain Varpa_2959 PF00072 Response regulator receiver domain Varpa_2959 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Varpa_2960 PF13307 Helicase C-terminal domain Varpa_2960 PF00929 Exonuclease Varpa_2960 PF04851 Type III restriction enzyme, res subunit Varpa_2965 PF00144 Beta-lactamase Varpa_2966 PF00202 Aminotransferase class-III Varpa_2971 PF00248 Aldo/keto reductase family Varpa_2972 PF06719 AraC-type transcriptional regulator N-terminus Varpa_2972 PF12833 Helix-turn-helix domain Varpa_2973 PF16916 Dimerisation domain of Zinc Transporter Varpa_2973 PF01545 Cation efflux family Varpa_2975 PF07690 Major Facilitator Superfamily Varpa_2978 PF00248 Aldo/keto reductase family Varpa_2979 PF07311 Dodecin Varpa_2982 PF00581 Rhodanese-like domain Varpa_2988 PF13380 CoA binding domain Varpa_2988 PF13607 Succinyl-CoA ligase like flavodoxin domain Varpa_2988 PF00583 Acetyltransferase (GNAT) family Varpa_2989 PF03447 Homoserine dehydrogenase, NAD binding domain Varpa_2989 PF00742 Homoserine dehydrogenase Varpa_2989 PF01842 ACT domain Varpa_2991 PF17755 UvrA DNA-binding domain Varpa_2993 PF13091 PLD-like domain Varpa_2993 PF13396 Phospholipase_D-nuclease N-terminal Varpa_2994 PF00196 Bacterial regulatory proteins, luxR family Varpa_2994 PF00072 Response regulator receiver domain Varpa_2997 PF04679 ATP dependent DNA ligase C terminal region Varpa_2997 PF01068 ATP dependent DNA ligase domain Varpa_3003 PF02806 Alpha amylase, C-terminal all-beta domain Varpa_3003 PF00128 Alpha amylase, catalytic domain Varpa_3003 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Varpa_3004 PF00128 Alpha amylase, catalytic domain Varpa_3004 PF11896 Domain of unknown function (DUF3416) Varpa_3005 PF00128 Alpha amylase, catalytic domain Varpa_3005 PF16657 Maltogenic Amylase, C-terminal domain Varpa_3007 PF00128 Alpha amylase, catalytic domain Varpa_3007 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Varpa_3008 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Varpa_3008 PF11941 Domain of unknown function (DUF3459) Varpa_3008 PF00128 Alpha amylase, catalytic domain Varpa_3009 PF02446 4-alpha-glucanotransferase Varpa_3015 PF07689 KaiB domain Varpa_3015 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3021 PF02525 Flavodoxin-like fold Varpa_3022 PF00199 Catalase Varpa_3022 PF06628 Catalase-related immune-responsive Varpa_3022 PF18011 C-terminal domain found in long catalases Varpa_3025 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_3025 PF13823 Alcohol dehydrogenase GroES-associated Varpa_3025 PF00107 Zinc-binding dehydrogenase Varpa_3027 PF00011 Hsp20/alpha crystallin family Varpa_3028 PF00011 Hsp20/alpha crystallin family Varpa_3031 PF00106 short chain dehydrogenase Varpa_3032 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_3032 PF00107 Zinc-binding dehydrogenase Varpa_3032 PF13823 Alcohol dehydrogenase GroES-associated Varpa_3035 PF02322 Cytochrome bd terminal oxidase subunit II Varpa_3036 PF01654 Cytochrome bd terminal oxidase subunit I Varpa_3039 PF00072 Response regulator receiver domain Varpa_3039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3039 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3039 PF08448 PAS fold Varpa_3039 PF13426 PAS domain Varpa_3041 PF00005 ABC transporter Varpa_3041 PF00664 ABC transporter transmembrane region Varpa_3042 PF01593 Flavin containing amine oxidoreductase Varpa_3043 PF16363 GDP-mannose 4,6 dehydratase Varpa_3046 PF04070 Domain of unknown function (DUF378) Varpa_3050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Varpa_3050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Varpa_3050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Varpa_3051 PF01370 NAD dependent epimerase/dehydratase family Varpa_3053 PF01658 Myo-inositol-1-phosphate synthase Varpa_3054 PF01370 NAD dependent epimerase/dehydratase family Varpa_3055 PF16363 GDP-mannose 4,6 dehydratase Varpa_3056 PF00107 Zinc-binding dehydrogenase Varpa_3056 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_3057 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Varpa_3057 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Varpa_3062 PF08003 Protein of unknown function (DUF1698) Varpa_3065 PF04552 Sigma-54, DNA binding domain Varpa_3065 PF04963 Sigma-54 factor, core binding domain Varpa_3065 PF00309 Sigma-54 factor, Activator interacting domain (AID) Varpa_3067 PF02954 Bacterial regulatory protein, Fis family Varpa_3067 PF00158 Sigma-54 interaction domain Varpa_3067 PF00072 Response regulator receiver domain Varpa_3068 PF08448 PAS fold Varpa_3068 PF03705 CheR methyltransferase, all-alpha domain Varpa_3068 PF01739 CheR methyltransferase, SAM binding domain Varpa_3068 PF01339 CheB methylesterase Varpa_3069 PF00072 Response regulator receiver domain Varpa_3069 PF01339 CheB methylesterase Varpa_3071 PF05067 Manganese containing catalase Varpa_3072 PF18146 Damage-inducible protein CinA KH domain Varpa_3072 PF00994 Probable molybdopterin binding domain Varpa_3072 PF02464 Competence-damaged protein Varpa_3074 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_3086 PF00106 short chain dehydrogenase Varpa_3093 PF05974 Domain of unknown function (DUF892) Varpa_3094 PF00561 alpha/beta hydrolase fold Varpa_3095 PF02535 ZIP Zinc transporter Varpa_3100 PF01026 TatD related DNase Varpa_3102 PF09115 DNA polymerase III, delta subunit, C terminal Varpa_3103 PF02223 Thymidylate kinase Varpa_3104 PF02618 YceG-like family Varpa_3105 PF01571 Aminomethyltransferase folate-binding domain Varpa_3108 PF07859 alpha/beta hydrolase fold Varpa_3109 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_3110 PF00465 Iron-containing alcohol dehydrogenase Varpa_3111 PF07519 Tannase and feruloyl esterase Varpa_3112 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3114 PF17674 HHH domain Varpa_3114 PF09371 Tex-like protein N-terminal domain Varpa_3114 PF00575 S1 RNA binding domain Varpa_3114 PF16921 Tex protein YqgF-like domain Varpa_3115 PF07730 Histidine kinase Varpa_3115 PF05384 Sensor protein DegS Varpa_3115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3116 PF01339 CheB methylesterase Varpa_3116 PF00072 Response regulator receiver domain Varpa_3123 PF01554 MatE Varpa_3125 PF07715 TonB-dependent Receptor Plug Domain Varpa_3125 PF00593 TonB dependent receptor Varpa_3126 PF04773 FecR protein Varpa_3126 PF16220 Domain of unknown function (DUF4880) Varpa_3127 PF08281 Sigma-70, region 4 Varpa_3127 PF04542 Sigma-70 region 2 Varpa_3128 PF01842 ACT domain Varpa_3128 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_3128 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_3129 PF00356 Bacterial regulatory proteins, lacI family Varpa_3130 PF13291 ACT domain Varpa_3130 PF02824 TGS domain Varpa_3130 PF04607 Region found in RelA / SpoT proteins Varpa_3132 PF07690 Major Facilitator Superfamily Varpa_3134 PF02470 MlaD protein Varpa_3135 PF04403 Paraquat-inducible protein A Varpa_3136 PF04403 Paraquat-inducible protein A Varpa_3137 PF07690 Major Facilitator Superfamily Varpa_3138 PF07690 Major Facilitator Superfamily Varpa_3140 PF01435 Peptidase family M48 Varpa_3141 PF07690 Major Facilitator Superfamily Varpa_3143 PF00691 OmpA family Varpa_3143 PF13677 Membrane MotB of proton-channel complex MotA/MotB Varpa_3148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3148 PF03466 LysR substrate binding domain Varpa_3150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3150 PF03466 LysR substrate binding domain Varpa_3155 PF00593 TonB dependent receptor Varpa_3155 PF07715 TonB-dependent Receptor Plug Domain Varpa_3156 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Varpa_3156 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Varpa_3157 PF06779 Uncharacterised MFS-type transporter YbfB Varpa_3158 PF13183 4Fe-4S dicluster domain Varpa_3158 PF01565 FAD binding domain Varpa_3158 PF02913 FAD linked oxidases, C-terminal domain Varpa_3159 PF00392 Bacterial regulatory proteins, gntR family Varpa_3159 PF07729 FCD domain Varpa_3160 PF00266 Aminotransferase class-V Varpa_3161 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3163 PF03466 LysR substrate binding domain Varpa_3164 PF07690 Major Facilitator Superfamily Varpa_3168 PF02525 Flavodoxin-like fold Varpa_3169 PF03466 LysR substrate binding domain Varpa_3169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3174 PF00106 short chain dehydrogenase Varpa_3176 PF18158 Adaptive response protein AidB N-terminal domain Varpa_3176 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3176 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_3177 PF16884 N-terminal domain of oxidoreductase Varpa_3177 PF00107 Zinc-binding dehydrogenase Varpa_3182 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3182 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3182 PF12806 Acetyl-CoA dehydrogenase C-terminal like Varpa_3182 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_3184 PF00108 Thiolase, N-terminal domain Varpa_3184 PF02803 Thiolase, C-terminal domain Varpa_3185 PF01546 Peptidase family M20/M25/M40 Varpa_3185 PF07687 Peptidase dimerisation domain Varpa_3186 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_3186 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_3186 PF00378 Enoyl-CoA hydratase/isomerase Varpa_3187 PF00005 ABC transporter Varpa_3188 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_3188 PF00005 ABC transporter Varpa_3190 PF02653 Branched-chain amino acid transport system / permease component Varpa_3193 PF00501 AMP-binding enzyme Varpa_3193 PF13193 AMP-binding enzyme C-terminal domain Varpa_3194 PF00135 Carboxylesterase family Varpa_3196 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Varpa_3197 PF01641 SelR domain Varpa_3198 PF04279 Intracellular septation protein A Varpa_3201 PF02769 AIR synthase related protein, C-terminal domain Varpa_3201 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Varpa_3201 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Varpa_3202 PF00557 Metallopeptidase family M24 Varpa_3204 PF00990 Diguanylate cyclase, GGDEF domain Varpa_3204 PF13185 GAF domain Varpa_3207 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Varpa_3208 PF03552 Cellulose synthase Varpa_3208 PF00535 Glycosyl transferase family 2 Varpa_3208 PF07238 PilZ domain Varpa_3209 PF03170 Bacterial cellulose synthase subunit Varpa_3210 PF01270 Glycosyl hydrolases family 8 Varpa_3211 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Varpa_3212 PF00563 EAL domain Varpa_3212 PF00990 Diguanylate cyclase, GGDEF domain Varpa_3212 PF03707 Bacterial signalling protein N terminal repeat Varpa_3215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Varpa_3215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Varpa_3215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Varpa_3215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Varpa_3216 PF03479 Plants and Prokaryotes Conserved (PCC) domain Varpa_3216 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_3216 PF12804 MobA-like NTP transferase domain Varpa_3217 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3218 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3219 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_3221 PF01327 Polypeptide deformylase Varpa_3223 PF00533 BRCA1 C Terminus (BRCT) domain Varpa_3223 PF12826 Helix-hairpin-helix motif Varpa_3223 PF03120 NAD-dependent DNA ligase OB-fold domain Varpa_3223 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Varpa_3223 PF01653 NAD-dependent DNA ligase adenylation domain Varpa_3225 PF02463 RecF/RecN/SMC N terminal domain Varpa_3225 PF06470 SMC proteins Flexible Hinge Domain Varpa_3228 PF13657 HipA N-terminal domain Varpa_3228 PF07804 HipA-like C-terminal domain Varpa_3237 PF07977 FabA-like domain Varpa_3240 PF05872 Bacterial protein of unknown function (DUF853) Varpa_3242 PF08281 Sigma-70, region 4 Varpa_3242 PF04542 Sigma-70 region 2 Varpa_3248 PF02608 ABC transporter substrate-binding protein PnrA-like Varpa_3249 PF01048 Phosphorylase superfamily Varpa_3257 PF07969 Amidohydrolase family Varpa_3261 PF08411 Exonuclease C-terminal Varpa_3261 PF00929 Exonuclease Varpa_3263 PF17871 AAA lid domain Varpa_3263 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_3263 PF02861 Clp amino terminal domain, pathogenicity island component Varpa_3263 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_3263 PF07724 AAA domain (Cdc48 subfamily) Varpa_3264 PF02617 ATP-dependent Clp protease adaptor protein ClpS Varpa_3271 PF00691 OmpA family Varpa_3271 PF05736 OprF membrane domain Varpa_3274 PF05638 Type VI secretion system effector, Hcp Varpa_3277 PF17871 AAA lid domain Varpa_3277 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_3277 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_3277 PF07724 AAA domain (Cdc48 subfamily) Varpa_3278 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_3282 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Varpa_3282 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Varpa_3283 PF13742 OB-fold nucleic acid binding domain Varpa_3283 PF02601 Exonuclease VII, large subunit Varpa_3284 PF01618 MotA/TolQ/ExbB proton channel family Varpa_3285 PF02472 Biopolymer transport protein ExbD/TolR Varpa_3286 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Varpa_3287 PF03966 Trm112p-like protein Varpa_3288 PF02348 Cytidylyltransferase Varpa_3289 PF05191 Adenylate kinase, active site lid Varpa_3290 PF17763 Glutaminase/Asparaginase C-terminal domain Varpa_3290 PF00710 Asparaginase, N-terminal Varpa_3291 PF00717 Peptidase S24-like Varpa_3291 PF01726 LexA DNA binding domain Varpa_3293 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_3293 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_3294 PF07690 Major Facilitator Superfamily Varpa_3295 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Varpa_3295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_3295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_3296 PF00378 Enoyl-CoA hydratase/isomerase Varpa_3297 PF13545 Crp-like helix-turn-helix domain Varpa_3297 PF00027 Cyclic nucleotide-binding domain Varpa_3299 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3299 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_3299 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3301 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Varpa_3301 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Varpa_3301 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Varpa_3301 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Varpa_3302 PF00809 Pterin binding enzyme Varpa_3303 PF06480 FtsH Extracellular Varpa_3303 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_3303 PF17862 AAA+ lid domain Varpa_3303 PF01434 Peptidase family M41 Varpa_3304 PF01728 FtsJ-like methyltransferase Varpa_3305 PF01985 CRS1 / YhbY (CRM) domain Varpa_3308 PF03449 Transcription elongation factor, N-terminal Varpa_3308 PF01272 Transcription elongation factor, GreA/GreB, C-term Varpa_3310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_3310 PF02142 MGS-like domain Varpa_3310 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Varpa_3311 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Varpa_3311 PF00117 Glutamine amidotransferase class-I Varpa_3312 PF00588 SpoU rRNA Methylase family Varpa_3312 PF08032 RNA 2'-O ribose methyltransferase substrate binding Varpa_3313 PF01351 Ribonuclease HII Varpa_3314 PF02684 Lipid-A-disaccharide synthetase Varpa_3315 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Varpa_3315 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_3316 PF07977 FabA-like domain Varpa_3317 PF14602 Hexapeptide repeat of succinyl-transferase Varpa_3317 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Varpa_3317 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_3319 PF07244 Surface antigen variable number repeat Varpa_3319 PF01103 Surface antigen Varpa_3320 PF17820 PDZ domain Varpa_3320 PF02163 Peptidase family M50 Varpa_3321 PF13288 DXP reductoisomerase C-terminal domain Varpa_3321 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Varpa_3321 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Varpa_3323 PF01255 Putative undecaprenyl diphosphate synthase Varpa_3324 PF01765 Ribosome recycling factor Varpa_3325 PF00696 Amino acid kinase family Varpa_3326 PF00889 Elongation factor TS Varpa_3327 PF00318 Ribosomal protein S2 Varpa_3328 PF01425 Amidase Varpa_3329 PF01266 FAD dependent oxidoreductase Varpa_3331 PF03853 YjeF-related protein N-terminus Varpa_3331 PF01256 Carbohydrate kinase Varpa_3333 PF17876 Cold shock domain Varpa_3333 PF08206 Ribonuclease B OB domain Varpa_3333 PF08461 Ribonuclease R winged-helix domain Varpa_3333 PF00575 S1 RNA binding domain Varpa_3333 PF00773 RNB domain Varpa_3334 PF04055 Radical SAM superfamily Varpa_3334 PF00919 Uncharacterized protein family UPF0004 Varpa_3334 PF18693 TRAM domain Varpa_3335 PF07879 PHB/PHA accumulation regulator DNA-binding domain Varpa_3335 PF05233 PHB accumulation regulatory domain Varpa_3336 PF13291 ACT domain Varpa_3336 PF02824 TGS domain Varpa_3336 PF04607 Region found in RelA / SpoT proteins Varpa_3338 PF00106 short chain dehydrogenase Varpa_3340 PF00486 Transcriptional regulatory protein, C terminal Varpa_3340 PF00072 Response regulator receiver domain Varpa_3341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3341 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3341 PF00672 HAMP domain Varpa_3342 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Varpa_3342 PF02542 YgbB family Varpa_3343 PF02542 YgbB family Varpa_3343 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Varpa_3344 PF00270 DEAD/DEAH box helicase Varpa_3344 PF02559 CarD-like/TRCF domain Varpa_3344 PF00271 Helicase conserved C-terminal domain Varpa_3344 PF17757 UvrB interaction domain Varpa_3344 PF03461 TRCF domain Varpa_3349 PF16220 Domain of unknown function (DUF4880) Varpa_3349 PF04773 FecR protein Varpa_3350 PF07715 TonB-dependent Receptor Plug Domain Varpa_3350 PF00593 TonB dependent receptor Varpa_3351 PF00155 Aminotransferase class I and II Varpa_3352 PF00730 HhH-GPD superfamily base excision DNA repair protein Varpa_3352 PF10576 Iron-sulfur binding domain of endonuclease III Varpa_3352 PF00633 Helix-hairpin-helix motif Varpa_3355 PF02654 Cobalamin-5-phosphate synthase Varpa_3356 PF02277 Phosphoribosyltransferase Varpa_3357 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Varpa_3357 PF07685 CobB/CobQ-like glutamine amidotransferase domain Varpa_3359 PF02321 Outer membrane efflux protein Varpa_3360 PF00873 AcrB/AcrD/AcrF family Varpa_3361 PF00529 HlyD membrane-fusion protein of T1SS Varpa_3361 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_3363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3363 PF03466 LysR substrate binding domain Varpa_3365 PF04172 LrgB-like family Varpa_3366 PF03788 LrgA family Varpa_3368 PF03186 CobD/Cbib protein Varpa_3369 PF02514 CobN/Magnesium Chelatase Varpa_3372 PF00881 Nitroreductase family Varpa_3373 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Varpa_3373 PF12557 Cob(I)alamin adenosyltransferase N terminal Varpa_3374 PF00005 ABC transporter Varpa_3375 PF01032 FecCD transport family Varpa_3377 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Varpa_3378 PF07685 CobB/CobQ-like glutamine amidotransferase domain Varpa_3378 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Varpa_3379 PF00593 TonB dependent receptor Varpa_3379 PF07715 TonB-dependent Receptor Plug Domain Varpa_3382 PF01925 Sulfite exporter TauE/SafE Varpa_3384 PF12833 Helix-turn-helix domain Varpa_3385 PF00795 Carbon-nitrogen hydrolase Varpa_3387 PF00144 Beta-lactamase Varpa_3387 PF07930 D-aminopeptidase, domain B Varpa_3391 PF00501 AMP-binding enzyme Varpa_3391 PF13193 AMP-binding enzyme C-terminal domain Varpa_3392 PF00378 Enoyl-CoA hydratase/isomerase Varpa_3393 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3395 PF00392 Bacterial regulatory proteins, gntR family Varpa_3395 PF07729 FCD domain Varpa_3396 PF01790 Prolipoprotein diacylglyceryl transferase Varpa_3399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3399 PF03466 LysR substrate binding domain Varpa_3400 PF03466 LysR substrate binding domain Varpa_3400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3401 PF00920 Dehydratase family Varpa_3404 PF00034 Cytochrome c Varpa_3406 PF13193 AMP-binding enzyme C-terminal domain Varpa_3406 PF16177 Acetyl-coenzyme A synthetase N-terminus Varpa_3406 PF00501 AMP-binding enzyme Varpa_3407 PF03350 Uncharacterized protein family, UPF0114 Varpa_3408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3408 PF03466 LysR substrate binding domain Varpa_3409 PF13460 NAD(P)H-binding Varpa_3410 PF00206 Lyase Varpa_3410 PF10415 Fumarase C C-terminus Varpa_3411 PF00571 CBS domain Varpa_3411 PF00005 ABC transporter Varpa_3412 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3413 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Varpa_3415 PF01177 Asp/Glu/Hydantoin racemase Varpa_3420 PF05362 Lon protease (S16) C-terminal proteolytic domain Varpa_3420 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_3420 PF02190 ATP-dependent protease La (LON) substrate-binding domain Varpa_3421 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_3421 PF06689 ClpX C4-type zinc finger Varpa_3421 PF07724 AAA domain (Cdc48 subfamily) Varpa_3422 PF00574 Clp protease Varpa_3423 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_3423 PF05698 Bacterial trigger factor protein (TF) C-terminus Varpa_3423 PF05697 Bacterial trigger factor protein (TF) Varpa_3424 PF00873 AcrB/AcrD/AcrF family Varpa_3425 PF13533 Biotin-lipoyl like Varpa_3426 PF02705 K+ potassium transporter Varpa_3430 PF01593 Flavin containing amine oxidoreductase Varpa_3432 PF01810 LysE type translocator Varpa_3434 PF13419 Haloacid dehalogenase-like hydrolase Varpa_3435 PF00762 Ferrochelatase Varpa_3436 PF02683 Cytochrome C biogenesis protein transmembrane region Varpa_3436 PF00578 AhpC/TSA family Varpa_3436 PF17991 Thioredoxin like C-terminal domain Varpa_3441 PF00005 ABC transporter Varpa_3443 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_3443 PF00005 ABC transporter Varpa_3444 PF10503 Esterase PHB depolymerase Varpa_3447 PF02954 Bacterial regulatory protein, Fis family Varpa_3447 PF00072 Response regulator receiver domain Varpa_3447 PF00158 Sigma-54 interaction domain Varpa_3449 PF02321 Outer membrane efflux protein Varpa_3451 PF00873 AcrB/AcrD/AcrF family Varpa_3453 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_3456 PF00486 Transcriptional regulatory protein, C terminal Varpa_3456 PF00072 Response regulator receiver domain Varpa_3457 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3457 PF08521 Two-component sensor kinase N-terminal Varpa_3457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3458 PF01479 S4 domain Varpa_3459 PF03976 Polyphosphate kinase 2 (PPK2) Varpa_3462 PF00034 Cytochrome c Varpa_3463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3463 PF05384 Sensor protein DegS Varpa_3463 PF07730 Histidine kinase Varpa_3464 PF01799 [2Fe-2S] binding domain Varpa_3464 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_3465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_3468 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_3469 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3470 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3471 PF00005 ABC transporter Varpa_3471 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_3472 PF01425 Amidase Varpa_3474 PF06977 SdiA-regulated Varpa_3475 PF00005 ABC transporter Varpa_3477 PF02653 Branched-chain amino acid transport system / permease component Varpa_3478 PF02653 Branched-chain amino acid transport system / permease component Varpa_3479 PF00005 ABC transporter Varpa_3479 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_3480 PF00296 Luciferase-like monooxygenase Varpa_3481 PF03358 NADPH-dependent FMN reductase Varpa_3482 PF00296 Luciferase-like monooxygenase Varpa_3483 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3483 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3484 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3484 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3485 PF08402 TOBE domain Varpa_3485 PF00005 ABC transporter Varpa_3487 PF14785 Maltose transport system permease protein MalF P2 domain Varpa_3487 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3489 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3489 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3490 PF00296 Luciferase-like monooxygenase Varpa_3491 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Varpa_3491 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_3492 PF00158 Sigma-54 interaction domain Varpa_3494 PF00171 Aldehyde dehydrogenase family Varpa_3498 PF13609 Gram-negative porin Varpa_3499 PF04185 Phosphoesterase family Varpa_3499 PF05506 Domain of unknown function (DUF756) Varpa_3501 PF13840 ACT domain Varpa_3501 PF00696 Amino acid kinase family Varpa_3501 PF01842 ACT domain Varpa_3502 PF01171 PP-loop family Varpa_3502 PF09179 TilS substrate binding domain Varpa_3503 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Varpa_3504 PF00730 HhH-GPD superfamily base excision DNA repair protein Varpa_3504 PF12833 Helix-turn-helix domain Varpa_3504 PF02805 Metal binding domain of Ada Varpa_3504 PF06029 AlkA N-terminal domain Varpa_3505 PF09190 DALR domain Varpa_3505 PF01406 tRNA synthetases class I (C) catalytic domain Varpa_3507 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Varpa_3508 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Varpa_3509 PF00149 Calcineurin-like phosphoesterase Varpa_3510 PF06167 Glucose-regulated metallo-peptidase M90 Varpa_3513 PF01464 Transglycosylase SLT domain Varpa_3513 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Varpa_3514 PF00464 Serine hydroxymethyltransferase Varpa_3515 PF03477 ATP cone domain Varpa_3518 PF05567 Neisseria PilC beta-propeller domain Varpa_3522 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Varpa_3522 PF01872 RibD C-terminal domain Varpa_3523 PF00677 Lumazine binding domain Varpa_3524 PF00925 GTP cyclohydrolase II Varpa_3524 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Varpa_3525 PF00885 6,7-dimethyl-8-ribityllumazine synthase Varpa_3526 PF01029 NusB family Varpa_3527 PF00155 Aminotransferase class I and II Varpa_3528 PF03061 Thioesterase superfamily Varpa_3529 PF01618 MotA/TolQ/ExbB proton channel family Varpa_3530 PF02472 Biopolymer transport protein ExbD/TolR Varpa_3532 PF03717 Penicillin-binding Protein dimerisation domain Varpa_3532 PF00905 Penicillin binding protein transpeptidase domain Varpa_3534 PF13086 AAA domain Varpa_3534 PF13086 AAA domain Varpa_3534 PF13087 AAA domain Varpa_3534 PF13195 Protein of unknown function (DUF4011) Varpa_3534 PF13087 AAA domain Varpa_3534 PF13195 Protein of unknown function (DUF4011) Varpa_3536 PF14579 Helix-hairpin-helix motif Varpa_3536 PF07733 Bacterial DNA polymerase III alpha NTPase domain Varpa_3536 PF02811 PHP domain Varpa_3536 PF01336 OB-fold nucleic acid binding domain Varpa_3536 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Varpa_3538 PF00072 Response regulator receiver domain Varpa_3538 PF00486 Transcriptional regulatory protein, C terminal Varpa_3539 PF08521 Two-component sensor kinase N-terminal Varpa_3539 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3541 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_3543 PF02678 Pirin Varpa_3543 PF05726 Pirin C-terminal cupin domain Varpa_3544 PF03358 NADPH-dependent FMN reductase Varpa_3545 PF07681 DoxX Varpa_3546 PF17954 Quercetinase C-terminal cupin domain Varpa_3546 PF02678 Pirin Varpa_3548 PF01593 Flavin containing amine oxidoreductase Varpa_3549 PF00749 tRNA synthetases class I (E and Q), catalytic domain Varpa_3550 PF02390 Putative methyltransferase Varpa_3553 PF00027 Cyclic nucleotide-binding domain Varpa_3553 PF13545 Crp-like helix-turn-helix domain Varpa_3555 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_3557 PF00933 Glycosyl hydrolase family 3 N terminal domain Varpa_3557 PF14310 Fibronectin type III-like domain Varpa_3557 PF01915 Glycosyl hydrolase family 3 C-terminal domain Varpa_3561 PF03069 Acetamidase/Formamidase family Varpa_3562 PF00005 ABC transporter Varpa_3563 PF08402 TOBE domain Varpa_3563 PF00005 ABC transporter Varpa_3567 PF01627 Hpt domain Varpa_3567 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3567 PF00072 Response regulator receiver domain Varpa_3567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3568 PF00072 Response regulator receiver domain Varpa_3571 PF03466 LysR substrate binding domain Varpa_3571 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3573 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3573 PF00072 Response regulator receiver domain Varpa_3573 PF08448 PAS fold Varpa_3573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3573 PF13188 PAS domain Varpa_3574 PF00072 Response regulator receiver domain Varpa_3575 PF08446 PAS fold Varpa_3575 PF00360 Phytochrome region Varpa_3575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3575 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3575 PF01590 GAF domain Varpa_3579 PF01433 Peptidase family M1 domain Varpa_3579 PF11838 ERAP1-like C-terminal domain Varpa_3580 PF07690 Major Facilitator Superfamily Varpa_3581 PF13609 Gram-negative porin Varpa_3582 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_3582 PF00175 Oxidoreductase NAD-binding domain Varpa_3583 PF00355 Rieske [2Fe-2S] domain Varpa_3585 PF01494 FAD binding domain Varpa_3586 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3589 PF01958 Domain of unknown function DUF108 Varpa_3589 PF03447 Homoserine dehydrogenase, NAD binding domain Varpa_3590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_3590 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_3590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_3592 PF09339 IclR helix-turn-helix domain Varpa_3592 PF01614 Bacterial transcriptional regulator Varpa_3596 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3597 PF01266 FAD dependent oxidoreductase Varpa_3598 PF08546 Ketopantoate reductase PanE/ApbA C terminal Varpa_3598 PF02558 Ketopantoate reductase PanE/ApbA Varpa_3599 PF02272 DHHA1 domain Varpa_3599 PF01411 tRNA synthetases class II (A) Varpa_3599 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Varpa_3601 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Varpa_3601 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Varpa_3603 PF00485 Phosphoribulokinase / Uridine kinase family Varpa_3604 PF06745 KaiC Varpa_3605 PF00072 Response regulator receiver domain Varpa_3605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3605 PF09308 LuxQ, periplasmic Varpa_3605 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3610 PF02634 FdhD/NarQ family Varpa_3611 PF00384 Molybdopterin oxidoreductase Varpa_3611 PF12838 4Fe-4S dicluster domain Varpa_3611 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_3611 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Varpa_3611 PF01568 Molydopterin dinucleotide binding domain Varpa_3612 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Varpa_3612 PF10531 SLBB domain Varpa_3612 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Varpa_3618 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_3618 PF00384 Molybdopterin oxidoreductase Varpa_3618 PF01568 Molydopterin dinucleotide binding domain Varpa_3619 PF13247 4Fe-4S dicluster domain Varpa_3623 PF03454 MoeA C-terminal region (domain IV) Varpa_3623 PF00994 Probable molybdopterin binding domain Varpa_3623 PF03453 MoeA N-terminal region (domain I and II) Varpa_3624 PF00994 Probable molybdopterin binding domain Varpa_3624 PF03453 MoeA N-terminal region (domain I and II) Varpa_3624 PF03454 MoeA C-terminal region (domain IV) Varpa_3625 PF12849 PBP superfamily domain Varpa_3626 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3627 PF00216 Bacterial DNA-binding protein Varpa_3629 PF07519 Tannase and feruloyl esterase Varpa_3639 PF12833 Helix-turn-helix domain Varpa_3639 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Varpa_3640 PF00881 Nitroreductase family Varpa_3641 PF13193 AMP-binding enzyme C-terminal domain Varpa_3641 PF00501 AMP-binding enzyme Varpa_3644 PF04303 PrpF protein Varpa_3645 PF00330 Aconitase family (aconitate hydratase) Varpa_3645 PF00694 Aconitase C-terminal domain Varpa_3646 PF00285 Citrate synthase, C-terminal domain Varpa_3650 PF14031 Putative serine dehydratase domain Varpa_3650 PF01168 Alanine racemase, N-terminal domain Varpa_3653 PF00378 Enoyl-CoA hydratase/isomerase Varpa_3657 PF01037 Lrp/AsnC ligand binding domain Varpa_3659 PF02515 CoA-transferase family III Varpa_3664 PF08497 Radical SAM N-terminal Varpa_3664 PF04055 Radical SAM superfamily Varpa_3664 PF11842 Domain of unknown function (DUF3362) Varpa_3665 PF01047 MarR family Varpa_3665 PF00583 Acetyltransferase (GNAT) family Varpa_3667 PF06314 Acetoacetate decarboxylase (ADC) Varpa_3671 PF03631 Virulence factor BrkB Varpa_3673 PF02417 Chromate transporter Varpa_3674 PF00248 Aldo/keto reductase family Varpa_3680 PF00588 SpoU rRNA Methylase family Varpa_3680 PF08032 RNA 2'-O ribose methyltransferase substrate binding Varpa_3683 PF00005 ABC transporter Varpa_3684 PF13472 GDSL-like Lipase/Acylhydrolase family Varpa_3687 PF01053 Cys/Met metabolism PLP-dependent enzyme Varpa_3692 PF00709 Adenylosuccinate synthetase Varpa_3693 PF13393 Histidyl-tRNA synthetase Varpa_3695 PF01145 SPFH domain / Band 7 family Varpa_3696 PF01145 SPFH domain / Band 7 family Varpa_3696 PF12221 Bacterial membrane protein N terminal Varpa_3697 PF13167 GTP-binding GTPase N-terminal Varpa_3697 PF16360 GTP-binding GTPase Middle Region Varpa_3697 PF01926 50S ribosome-binding GTPase Varpa_3698 PF17209 Hfq protein Varpa_3699 PF01926 50S ribosome-binding GTPase Varpa_3699 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Varpa_3700 PF13360 PQQ-like domain Varpa_3702 PF03129 Anticodon binding domain Varpa_3702 PF13393 Histidyl-tRNA synthetase Varpa_3703 PF04551 GcpE protein Varpa_3706 PF04055 Radical SAM superfamily Varpa_3707 PF00334 Nucleoside diphosphate kinase Varpa_3708 PF00849 RNA pseudouridylate synthase Varpa_3708 PF01479 S4 domain Varpa_3709 PF04079 Segregation and condensation complex subunit ScpB Varpa_3710 PF01479 S4 domain Varpa_3710 PF00849 RNA pseudouridylate synthase Varpa_3711 PF13525 Outer membrane lipoprotein Varpa_3712 PF06733 DEAD_2 Varpa_3712 PF13307 Helicase C-terminal domain Varpa_3716 PF03969 AFG1-like ATPase Varpa_3717 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_3717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Varpa_3718 PF00364 Biotin-requiring enzyme Varpa_3718 PF02817 e3 binding domain Varpa_3718 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Varpa_3719 PF02779 Transketolase, pyrimidine binding domain Varpa_3719 PF00676 Dehydrogenase E1 component Varpa_3719 PF16078 2-oxoglutarate dehydrogenase N-terminus Varpa_3719 PF16870 2-oxoglutarate dehydrogenase C-terminal Varpa_3720 PF00501 AMP-binding enzyme Varpa_3720 PF13193 AMP-binding enzyme C-terminal domain Varpa_3720 PF16177 Acetyl-coenzyme A synthetase N-terminus Varpa_3725 PF07995 Glucose / Sorbosone dehydrogenase Varpa_3726 PF00877 NlpC/P60 family Varpa_3727 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Varpa_3727 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_3728 PF00227 Proteasome subunit Varpa_3729 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Varpa_3729 PF00364 Biotin-requiring enzyme Varpa_3729 PF02817 e3 binding domain Varpa_3730 PF17831 Pyruvate dehydrogenase E1 component middle domain Varpa_3730 PF00456 Transketolase, thiamine diphosphate binding domain Varpa_3731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3731 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3731 PF00989 PAS fold Varpa_3732 PF00196 Bacterial regulatory proteins, luxR family Varpa_3732 PF00072 Response regulator receiver domain Varpa_3733 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Varpa_3733 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Varpa_3734 PF01432 Peptidase family M3 Varpa_3736 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Varpa_3737 PF01180 Dihydroorotate dehydrogenase Varpa_3740 PF01266 FAD dependent oxidoreductase Varpa_3743 PF00929 Exonuclease Varpa_3744 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_3745 PF00012 Hsp70 protein Varpa_3746 PF07743 HSCB C-terminal oligomerisation domain Varpa_3747 PF01521 Iron-sulphur cluster biosynthesis Varpa_3748 PF01592 NifU-like N terminal domain Varpa_3749 PF00266 Aminotransferase class-V Varpa_3750 PF02082 Transcriptional regulator Varpa_3752 PF00155 Aminotransferase class I and II Varpa_3754 PF04060 Putative Fe-S cluster Varpa_3756 PF00892 EamA-like transporter family Varpa_3757 PF01037 Lrp/AsnC ligand binding domain Varpa_3759 PF06968 Biotin and Thiamin Synthesis associated domain Varpa_3759 PF04055 Radical SAM superfamily Varpa_3760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_3760 PF00289 Biotin carboxylase, N-terminal domain Varpa_3760 PF02785 Biotin carboxylase C-terminal domain Varpa_3761 PF01039 Carboxyl transferase domain Varpa_3766 PF00392 Bacterial regulatory proteins, gntR family Varpa_3766 PF07729 FCD domain Varpa_3767 PF09339 IclR helix-turn-helix domain Varpa_3768 PF01207 Dihydrouridine synthase (Dus) Varpa_3769 PF00072 Response regulator receiver domain Varpa_3769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_3769 PF00512 His Kinase A (phospho-acceptor) domain Varpa_3769 PF00989 PAS fold Varpa_3769 PF01627 Hpt domain Varpa_3769 PF18415 Histidine kinase receptor ArcB trans-membrane domain Varpa_3774 PF01047 MarR family Varpa_3775 PF00561 alpha/beta hydrolase fold Varpa_3777 PF00440 Bacterial regulatory proteins, tetR family Varpa_3779 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_3779 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_3779 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_3780 PF01037 Lrp/AsnC ligand binding domain Varpa_3789 PF00072 Response regulator receiver domain Varpa_3789 PF00196 Bacterial regulatory proteins, luxR family Varpa_3795 PF00892 EamA-like transporter family Varpa_3798 PF07690 Major Facilitator Superfamily Varpa_3799 PF03466 LysR substrate binding domain Varpa_3799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3802 PF00990 Diguanylate cyclase, GGDEF domain Varpa_3802 PF17151 Periplasmic sensor domain Varpa_3805 PF02653 Branched-chain amino acid transport system / permease component Varpa_3807 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_3807 PF00005 ABC transporter Varpa_3808 PF00005 ABC transporter Varpa_3809 PF00732 GMC oxidoreductase Varpa_3809 PF05199 GMC oxidoreductase Varpa_3810 PF00171 Aldehyde dehydrogenase family Varpa_3812 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_3814 PF04209 homogentisate 1,2-dioxygenase Varpa_3815 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3816 PF03358 NADPH-dependent FMN reductase Varpa_3818 PF03466 LysR substrate binding domain Varpa_3818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3819 PF02525 Flavodoxin-like fold Varpa_3821 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3824 PF03466 LysR substrate binding domain Varpa_3826 PF00356 Bacterial regulatory proteins, lacI family Varpa_3828 PF13407 Periplasmic binding protein domain Varpa_3829 PF01638 HxlR-like helix-turn-helix Varpa_3830 PF00893 Small Multidrug Resistance protein Varpa_3835 PF00155 Aminotransferase class I and II Varpa_3835 PF00392 Bacterial regulatory proteins, gntR family Varpa_3838 PF04679 ATP dependent DNA ligase C terminal region Varpa_3838 PF01068 ATP dependent DNA ligase domain Varpa_3841 PF01497 Periplasmic binding protein Varpa_3845 PF07728 AAA domain (dynein-related subfamily) Varpa_3845 PF17863 AAA lid domain Varpa_3845 PF13519 von Willebrand factor type A domain Varpa_3846 PF07728 AAA domain (dynein-related subfamily) Varpa_3846 PF17863 AAA lid domain Varpa_3846 PF13519 von Willebrand factor type A domain Varpa_3847 PF02514 CobN/Magnesium Chelatase Varpa_3848 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_3848 PF07683 Cobalamin synthesis protein cobW C-terminal domain Varpa_3851 PF07715 TonB-dependent Receptor Plug Domain Varpa_3851 PF00593 TonB dependent receptor Varpa_3854 PF00999 Sodium/hydrogen exchanger family Varpa_3854 PF02254 TrkA-N domain Varpa_3855 PF00375 Sodium:dicarboxylate symporter family Varpa_3856 PF00106 short chain dehydrogenase Varpa_3857 PF01965 DJ-1/PfpI family Varpa_3858 PF18146 Damage-inducible protein CinA KH domain Varpa_3858 PF00994 Probable molybdopterin binding domain Varpa_3858 PF02464 Competence-damaged protein Varpa_3859 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3860 PF03328 HpcH/HpaI aldolase/citrate lyase family Varpa_3861 PF02515 CoA-transferase family III Varpa_3863 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_3864 PF03466 LysR substrate binding domain Varpa_3865 PF02798 Glutathione S-transferase, N-terminal domain Varpa_3867 PF00108 Thiolase, N-terminal domain Varpa_3867 PF02803 Thiolase, C-terminal domain Varpa_3868 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Varpa_3871 PF13417 Glutathione S-transferase, N-terminal domain Varpa_3873 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_3875 PF05981 CreA protein Varpa_3876 PF01551 Peptidase family M23 Varpa_3876 PF01476 LysM domain Varpa_3877 PF13091 PLD-like domain Varpa_3880 PF13532 2OG-Fe(II) oxygenase superfamily Varpa_3881 PF00005 ABC transporter Varpa_3881 PF00664 ABC transporter transmembrane region Varpa_3882 PF00356 Bacterial regulatory proteins, lacI family Varpa_3883 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_3884 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_3886 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Varpa_3886 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Varpa_3887 PF07005 Sugar-binding N-terminal domain Varpa_3887 PF17042 Nucleotide-binding C-terminal domain Varpa_3895 PF03891 Domain of unknown function (DUF333) Varpa_3902 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3903 PF00378 Enoyl-CoA hydratase/isomerase Varpa_3904 PF13380 CoA binding domain Varpa_3904 PF13607 Succinyl-CoA ligase like flavodoxin domain Varpa_3904 PF00583 Acetyltransferase (GNAT) family Varpa_3905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_3905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_3906 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3909 PF00665 Integrase core domain Varpa_3909 PF13276 HTH-like domain Varpa_3910 PF01527 Transposase Varpa_3917 PF13276 HTH-like domain Varpa_3917 PF00665 Integrase core domain Varpa_3919 PF01527 Transposase Varpa_3922 PF13276 HTH-like domain Varpa_3922 PF00665 Integrase core domain Varpa_3931 PF17287 POTRA domain Varpa_3931 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Varpa_3931 PF08479 POTRA domain, ShlB-type Varpa_3933 PF13332 Hemagglutinin repeat Varpa_3933 PF05860 haemagglutination activity domain Varpa_3933 PF04829 Pre-toxin domain with VENN motif Varpa_3933 PF13018 Extended Signal Peptide of Type V secretion system Varpa_3938 PF01527 Transposase Varpa_3942 PF00216 Bacterial DNA-binding protein Varpa_3943 PF03483 B3/4 domain Varpa_3943 PF03147 Ferredoxin-fold anticodon binding domain Varpa_3943 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Varpa_3943 PF03484 tRNA synthetase B5 domain Varpa_3943 PF01588 Putative tRNA binding domain Varpa_3944 PF01409 tRNA synthetases class II core domain (F) Varpa_3944 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Varpa_3945 PF00453 Ribosomal protein L20 Varpa_3946 PF01632 Ribosomal protein L35 Varpa_3947 PF05198 Translation initiation factor IF-3, N-terminal domain Varpa_3947 PF00707 Translation initiation factor IF-3, C-terminal domain Varpa_3948 PF02824 TGS domain Varpa_3948 PF03129 Anticodon binding domain Varpa_3948 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Varpa_3948 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Varpa_3949 PF00463 Isocitrate lyase family Varpa_3955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_3955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_3955 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_3956 PF17938 Tetracyclin repressor-like, C-terminal domain Varpa_3956 PF00440 Bacterial regulatory proteins, tetR family Varpa_3957 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_3958 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_3959 PF09084 NMT1/THI5 like Varpa_3960 PF00005 ABC transporter Varpa_3962 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Varpa_3962 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Varpa_3965 PF06224 Winged helix DNA-binding domain Varpa_3966 PF00885 6,7-dimethyl-8-ribityllumazine synthase Varpa_3968 PF03960 ArsC family Varpa_3970 PF08331 Domain of unknown function (DUF1730) Varpa_3971 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Varpa_3972 PF11741 AMIN domain Varpa_3972 PF01520 N-acetylmuramoyl-L-alanine amidase Varpa_3974 PF09335 SNARE associated Golgi protein Varpa_3976 PF01119 DNA mismatch repair protein, C-terminal domain Varpa_3976 PF08676 MutL C terminal dimerisation domain Varpa_3978 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_3979 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_3979 PF01799 [2Fe-2S] binding domain Varpa_3980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Varpa_3981 PF12833 Helix-turn-helix domain Varpa_3981 PF06719 AraC-type transcriptional regulator N-terminus Varpa_3983 PF00005 ABC transporter Varpa_3984 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_3985 PF07729 FCD domain Varpa_3985 PF00392 Bacterial regulatory proteins, gntR family Varpa_3986 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Varpa_3988 PF03795 YCII-related domain Varpa_3989 PF08281 Sigma-70, region 4 Varpa_3989 PF04542 Sigma-70 region 2 Varpa_3990 PF00144 Beta-lactamase Varpa_3993 PF01804 Penicillin amidase Varpa_3998 PF02653 Branched-chain amino acid transport system / permease component Varpa_4001 PF00005 ABC transporter Varpa_4002 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_4002 PF00005 ABC transporter Varpa_4004 PF07690 Major Facilitator Superfamily Varpa_4005 PF00529 HlyD membrane-fusion protein of T1SS Varpa_4005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_4006 PF02321 Outer membrane efflux protein Varpa_4007 PF01047 MarR family Varpa_4008 PF00005 ABC transporter Varpa_4008 PF00664 ABC transporter transmembrane region Varpa_4010 PF00293 NUDIX domain Varpa_4012 PF00361 Proton-conducting membrane transporter Varpa_4013 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Varpa_4013 PF00361 Proton-conducting membrane transporter Varpa_4014 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Varpa_4014 PF00361 Proton-conducting membrane transporter Varpa_4015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Varpa_4016 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Varpa_4017 PF12838 4Fe-4S dicluster domain Varpa_4018 PF00146 NADH dehydrogenase Varpa_4019 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Varpa_4019 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Varpa_4019 PF00384 Molybdopterin oxidoreductase Varpa_4020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Varpa_4020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Varpa_4020 PF10531 SLBB domain Varpa_4022 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Varpa_4023 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Varpa_4024 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Varpa_4025 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Varpa_4026 PF03840 Preprotein translocase SecG subunit Varpa_4027 PF00121 Triosephosphate isomerase Varpa_4028 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_4028 PF00107 Zinc-binding dehydrogenase Varpa_4029 PF00575 S1 RNA binding domain Varpa_4029 PF01138 3' exoribonuclease family, domain 1 Varpa_4029 PF00013 KH domain Varpa_4029 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Varpa_4029 PF03725 3' exoribonuclease family, domain 2 Varpa_4030 PF00312 Ribosomal protein S15 Varpa_4031 PF00892 EamA-like transporter family Varpa_4033 PF13458 Periplasmic binding protein Varpa_4035 PF00814 Glycoprotease family Varpa_4036 PF03861 ANTAR domain Varpa_4036 PF08376 Nitrate and nitrite sensing Varpa_4038 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4039 PF00005 ABC transporter Varpa_4040 PF00072 Response regulator receiver domain Varpa_4040 PF03861 ANTAR domain Varpa_4041 PF07690 Major Facilitator Superfamily Varpa_4042 PF03793 PASTA domain Varpa_4042 PF00069 Protein kinase domain Varpa_4043 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Varpa_4043 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_4043 PF18267 Rubredoxin NAD+ reductase C-terminal domain Varpa_4043 PF04324 BFD-like [2Fe-2S] binding domain Varpa_4043 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Varpa_4044 PF00355 Rieske [2Fe-2S] domain Varpa_4045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_4045 PF01568 Molydopterin dinucleotide binding domain Varpa_4045 PF00384 Molybdopterin oxidoreductase Varpa_4047 PF00591 Glycosyl transferase family, a/b domain Varpa_4047 PF02885 Glycosyl transferase family, helical bundle domain Varpa_4048 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Varpa_4050 PF08402 TOBE domain Varpa_4050 PF00005 ABC transporter Varpa_4052 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4053 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4055 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Varpa_4057 PF01165 Ribosomal protein S21 Varpa_4059 PF00293 NUDIX domain Varpa_4062 PF16363 GDP-mannose 4,6 dehydratase Varpa_4063 PF01758 Sodium Bile acid symporter family Varpa_4065 PF00106 short chain dehydrogenase Varpa_4066 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_4066 PF00107 Zinc-binding dehydrogenase Varpa_4067 PF03459 TOBE domain Varpa_4067 PF00005 ABC transporter Varpa_4067 PF17912 MalK OB fold domain Varpa_4068 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4069 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4071 PF07690 Major Facilitator Superfamily Varpa_4072 PF10114 Sensory domain found in PocR Varpa_4072 PF12833 Helix-turn-helix domain Varpa_4073 PF01523 Putative modulator of DNA gyrase Varpa_4074 PF04751 Protein of unknown function (DUF615) Varpa_4075 PF00994 Probable molybdopterin binding domain Varpa_4078 PF00873 AcrB/AcrD/AcrF family Varpa_4079 PF00529 HlyD membrane-fusion protein of T1SS Varpa_4079 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_4080 PF02321 Outer membrane efflux protein Varpa_4082 PF00072 Response regulator receiver domain Varpa_4082 PF00486 Transcriptional regulatory protein, C terminal Varpa_4083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4083 PF00672 HAMP domain Varpa_4083 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4084 PF00999 Sodium/hydrogen exchanger family Varpa_4085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4085 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4087 PF00072 Response regulator receiver domain Varpa_4087 PF00486 Transcriptional regulatory protein, C terminal Varpa_4095 PF13411 MerR HTH family regulatory protein Varpa_4097 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_4097 PF00550 Phosphopantetheine attachment site Varpa_4097 PF09277 Erythronolide synthase, docking Varpa_4097 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_4097 PF00698 Acyl transferase domain Varpa_4097 PF14765 Polyketide synthase dehydratase Varpa_4097 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_4097 PF08990 Erythronolide synthase docking Varpa_4097 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_4097 PF08659 KR domain Varpa_4098 PF03466 LysR substrate binding domain Varpa_4098 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4100 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_4101 PF00588 SpoU rRNA Methylase family Varpa_4102 PF00459 Inositol monophosphatase family Varpa_4103 PF12805 FUSC-like inner membrane protein yccS Varpa_4107 PF00005 ABC transporter Varpa_4107 PF17755 UvrA DNA-binding domain Varpa_4107 PF17760 UvrA interaction domain Varpa_4108 PF06719 AraC-type transcriptional regulator N-terminus Varpa_4108 PF12833 Helix-turn-helix domain Varpa_4111 PF03473 MOSC domain Varpa_4111 PF03475 3-alpha domain Varpa_4115 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4116 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4117 PF00884 Sulfatase Varpa_4121 PF00593 TonB dependent receptor Varpa_4121 PF07715 TonB-dependent Receptor Plug Domain Varpa_4122 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_4123 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4124 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_4124 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4125 PF00005 ABC transporter Varpa_4125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_4130 PF03551 Transcriptional regulator PadR-like family Varpa_4131 PF04954 Siderophore-interacting protein Varpa_4131 PF08021 Siderophore-interacting FAD-binding domain Varpa_4132 PF01544 CorA-like Mg2+ transporter protein Varpa_4134 PF01624 MutS domain I Varpa_4134 PF05188 MutS domain II Varpa_4134 PF05192 MutS domain III Varpa_4134 PF05190 MutS family domain IV Varpa_4134 PF00488 MutS domain V Varpa_4138 PF08281 Sigma-70, region 4 Varpa_4138 PF04542 Sigma-70 region 2 Varpa_4139 PF03795 YCII-related domain Varpa_4141 PF00072 Response regulator receiver domain Varpa_4141 PF00196 Bacterial regulatory proteins, luxR family Varpa_4143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4143 PF00672 HAMP domain Varpa_4143 PF07730 Histidine kinase Varpa_4144 PF02673 Bacitracin resistance protein BacA Varpa_4146 PF01799 [2Fe-2S] binding domain Varpa_4146 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_4147 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_4149 PF02321 Outer membrane efflux protein Varpa_4150 PF00873 AcrB/AcrD/AcrF family Varpa_4152 PF00873 AcrB/AcrD/AcrF family Varpa_4153 PF13533 Biotin-lipoyl like Varpa_4155 PF04116 Fatty acid hydroxylase superfamily Varpa_4157 PF07694 5TMR of 5TMR-LYT Varpa_4157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4157 PF06580 Histidine kinase Varpa_4158 PF00072 Response regulator receiver domain Varpa_4158 PF04397 LytTr DNA-binding domain Varpa_4160 PF00749 tRNA synthetases class I (E and Q), catalytic domain Varpa_4160 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Varpa_4161 PF02086 D12 class N6 adenine-specific DNA methyltransferase Varpa_4164 PF00849 RNA pseudouridylate synthase Varpa_4170 PF00753 Metallo-beta-lactamase superfamily Varpa_4171 PF00909 Ammonium Transporter Family Varpa_4172 PF00072 Response regulator receiver domain Varpa_4172 PF04397 LytTr DNA-binding domain Varpa_4176 PF00593 TonB dependent receptor Varpa_4176 PF07715 TonB-dependent Receptor Plug Domain Varpa_4179 PF13732 Domain of unknown function (DUF4162) Varpa_4179 PF00005 ABC transporter Varpa_4180 PF00444 Ribosomal protein L36 Varpa_4183 PF01926 50S ribosome-binding GTPase Varpa_4185 PF01380 SIS domain Varpa_4185 PF00571 CBS domain Varpa_4187 PF13411 MerR HTH family regulatory protein Varpa_4189 PF00106 short chain dehydrogenase Varpa_4190 PF00072 Response regulator receiver domain Varpa_4190 PF01339 CheB methylesterase Varpa_4191 PF04262 Glutamate-cysteine ligase Varpa_4193 PF02230 Phospholipase/Carboxylesterase Varpa_4196 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_4196 PF07683 Cobalamin synthesis protein cobW C-terminal domain Varpa_4200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4200 PF03466 LysR substrate binding domain Varpa_4201 PF07690 Major Facilitator Superfamily Varpa_4203 PF00378 Enoyl-CoA hydratase/isomerase Varpa_4208 PF05661 Protein of unknown function (DUF808) Varpa_4212 PF09905 DNA-binding protein VF530 Varpa_4213 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_4215 PF00849 RNA pseudouridylate synthase Varpa_4216 PF00582 Universal stress protein family Varpa_4219 PF10017 Histidine-specific methyltransferase, SAM-dependent Varpa_4220 PF12867 DinB superfamily Varpa_4220 PF03781 Sulfatase-modifying factor enzyme 1 Varpa_4221 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_4223 PF00565 Staphylococcal nuclease homologue Varpa_4225 PF13193 AMP-binding enzyme C-terminal domain Varpa_4225 PF00501 AMP-binding enzyme Varpa_4226 PF02566 OsmC-like protein Varpa_4227 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4232 PF07690 Major Facilitator Superfamily Varpa_4234 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_4235 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4236 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4237 PF00005 ABC transporter Varpa_4241 PF03009 Glycerophosphoryl diester phosphodiesterase family Varpa_4245 PF07732 Multicopper oxidase Varpa_4245 PF07731 Multicopper oxidase Varpa_4245 PF00394 Multicopper oxidase Varpa_4249 PF01266 FAD dependent oxidoreductase Varpa_4250 PF03576 Peptidase family S58 Varpa_4253 PF13411 MerR HTH family regulatory protein Varpa_4255 PF00005 ABC transporter Varpa_4255 PF12848 ABC transporter Varpa_4256 PF00270 DEAD/DEAH box helicase Varpa_4256 PF00271 Helicase conserved C-terminal domain Varpa_4258 PF03459 TOBE domain Varpa_4258 PF17912 MalK OB fold domain Varpa_4258 PF00005 ABC transporter Varpa_4259 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4260 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4262 PF00392 Bacterial regulatory proteins, gntR family Varpa_4262 PF07729 FCD domain Varpa_4263 PF00920 Dehydratase family Varpa_4264 PF05035 2-keto-3-deoxy-galactonokinase Varpa_4265 PF01081 KDPG and KHG aldolase Varpa_4266 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_4273 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4273 PF07689 KaiB domain Varpa_4273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4274 PF12697 Alpha/beta hydrolase family Varpa_4275 PF13416 Bacterial extracellular solute-binding protein Varpa_4277 PF00005 ABC transporter Varpa_4277 PF08402 TOBE domain Varpa_4279 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_4282 PF01081 KDPG and KHG aldolase Varpa_4283 PF00920 Dehydratase family Varpa_4288 PF12804 MobA-like NTP transferase domain Varpa_4288 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_4289 PF01243 Pyridoxamine 5'-phosphate oxidase Varpa_4289 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Varpa_4292 PF00593 TonB dependent receptor Varpa_4292 PF07715 TonB-dependent Receptor Plug Domain Varpa_4294 PF01625 Peptide methionine sulfoxide reductase Varpa_4295 PF17922 Tetracyclin repressor-like, C-terminal domain Varpa_4295 PF00440 Bacterial regulatory proteins, tetR family Varpa_4297 PF00581 Rhodanese-like domain Varpa_4300 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Varpa_4300 PF00534 Glycosyl transferases group 1 Varpa_4301 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Varpa_4301 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Varpa_4301 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Varpa_4301 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Varpa_4302 PF12833 Helix-turn-helix domain Varpa_4302 PF02805 Metal binding domain of Ada Varpa_4303 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Varpa_4303 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Varpa_4304 PF00892 EamA-like transporter family Varpa_4307 PF00501 AMP-binding enzyme Varpa_4307 PF13193 AMP-binding enzyme C-terminal domain Varpa_4308 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4308 PF03466 LysR substrate binding domain Varpa_4310 PF02913 FAD linked oxidases, C-terminal domain Varpa_4310 PF01565 FAD binding domain Varpa_4311 PF07690 Major Facilitator Superfamily Varpa_4313 PF02798 Glutathione S-transferase, N-terminal domain Varpa_4314 PF01804 Penicillin amidase Varpa_4316 PF02321 Outer membrane efflux protein Varpa_4317 PF00005 ABC transporter Varpa_4317 PF12704 MacB-like periplasmic core domain Varpa_4317 PF02687 FtsX-like permease family Varpa_4318 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_4319 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Varpa_4320 PF00664 ABC transporter transmembrane region Varpa_4320 PF00005 ABC transporter Varpa_4322 PF00551 Formyl transferase Varpa_4323 PF07715 TonB-dependent Receptor Plug Domain Varpa_4323 PF00593 TonB dependent receptor Varpa_4324 PF13193 AMP-binding enzyme C-terminal domain Varpa_4324 PF00668 Condensation domain Varpa_4324 PF00501 AMP-binding enzyme Varpa_4324 PF00550 Phosphopantetheine attachment site Varpa_4324 PF00975 Thioesterase domain Varpa_4325 PF00668 Condensation domain Varpa_4325 PF00550 Phosphopantetheine attachment site Varpa_4325 PF00501 AMP-binding enzyme Varpa_4325 PF00975 Thioesterase domain Varpa_4325 PF13193 AMP-binding enzyme C-terminal domain Varpa_4326 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_4326 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_4326 PF00668 Condensation domain Varpa_4326 PF00550 Phosphopantetheine attachment site Varpa_4326 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_4326 PF00698 Acyl transferase domain Varpa_4327 PF00550 Phosphopantetheine attachment site Varpa_4327 PF00668 Condensation domain Varpa_4327 PF13193 AMP-binding enzyme C-terminal domain Varpa_4327 PF00501 AMP-binding enzyme Varpa_4329 PF03621 MbtH-like protein Varpa_4332 PF01648 4'-phosphopantetheinyl transferase superfamily Varpa_4335 PF00149 Calcineurin-like phosphoesterase Varpa_4337 PF03466 LysR substrate binding domain Varpa_4337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4338 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_4338 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_4339 PF00171 Aldehyde dehydrogenase family Varpa_4340 PF01425 Amidase Varpa_4341 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_4342 PF00005 ABC transporter Varpa_4342 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_4343 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_4343 PF00005 ABC transporter Varpa_4344 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4344 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_4345 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4346 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_4347 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4348 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_4348 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_4348 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_4349 PF00501 AMP-binding enzyme Varpa_4349 PF13193 AMP-binding enzyme C-terminal domain Varpa_4350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4350 PF03466 LysR substrate binding domain Varpa_4351 PF00749 tRNA synthetases class I (E and Q), catalytic domain Varpa_4352 PF01053 Cys/Met metabolism PLP-dependent enzyme Varpa_4353 PF00156 Phosphoribosyl transferase domain Varpa_4356 PF08245 Mur ligase middle domain Varpa_4356 PF02875 Mur ligase family, glutamate ligase domain Varpa_4357 PF03960 ArsC family Varpa_4359 PF06865 Pyrimidine/purine nucleoside phosphorylase Varpa_4360 PF00764 Arginosuccinate synthase Varpa_4362 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Varpa_4362 PF01565 FAD binding domain Varpa_4363 PF04461 Protein of unknown function (DUF520) Varpa_4365 PF01042 Endoribonuclease L-PSP Varpa_4366 PF02660 Glycerol-3-phosphate acyltransferase Varpa_4367 PF04073 Aminoacyl-tRNA editing domain Varpa_4368 PF00248 Aldo/keto reductase family Varpa_4369 PF00561 alpha/beta hydrolase fold Varpa_4372 PF00296 Luciferase-like monooxygenase Varpa_4374 PF03180 NLPA lipoprotein Varpa_4375 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4376 PF00005 ABC transporter Varpa_4376 PF09383 NIL domain Varpa_4377 PF03180 NLPA lipoprotein Varpa_4379 PF13419 Haloacid dehalogenase-like hydrolase Varpa_4380 PF01433 Peptidase family M1 domain Varpa_4380 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Varpa_4380 PF11940 Domain of unknown function (DUF3458) Ig-like fold Varpa_4381 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Varpa_4382 PF01844 HNH endonuclease Varpa_4386 PF07690 Major Facilitator Superfamily Varpa_4387 PF01515 Phosphate acetyl/butaryl transferase Varpa_4398 PF04976 DMSO reductase anchor subunit (DmsC) Varpa_4399 PF13247 4Fe-4S dicluster domain Varpa_4399 PF12800 4Fe-4S binding domain Varpa_4400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_4400 PF00384 Molybdopterin oxidoreductase Varpa_4400 PF01568 Molydopterin dinucleotide binding domain Varpa_4401 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4401 PF03466 LysR substrate binding domain Varpa_4402 PF00871 Acetokinase family Varpa_4403 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_4403 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_4403 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_4404 PF01614 Bacterial transcriptional regulator Varpa_4404 PF09339 IclR helix-turn-helix domain Varpa_4405 PF12556 Cobaltochelatase CobS subunit N terminal Varpa_4405 PF08406 CbbQ/NirQ/NorQ C-terminal Varpa_4405 PF07728 AAA domain (dynein-related subfamily) Varpa_4406 PF06213 Cobalamin biosynthesis protein CobT Varpa_4406 PF11775 Cobalamin biosynthesis protein CobT VWA domain Varpa_4408 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4409 PF00171 Aldehyde dehydrogenase family Varpa_4410 PF00501 AMP-binding enzyme Varpa_4410 PF13193 AMP-binding enzyme C-terminal domain Varpa_4418 PF01555 DNA methylase Varpa_4419 PF01614 Bacterial transcriptional regulator Varpa_4419 PF09339 IclR helix-turn-helix domain Varpa_4420 PF05199 GMC oxidoreductase Varpa_4420 PF00732 GMC oxidoreductase Varpa_4421 PF00083 Sugar (and other) transporter Varpa_4426 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Varpa_4429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4429 PF03466 LysR substrate binding domain Varpa_4430 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4432 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Varpa_4434 PF00392 Bacterial regulatory proteins, gntR family Varpa_4434 PF00155 Aminotransferase class I and II Varpa_4436 PF01266 FAD dependent oxidoreductase Varpa_4437 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_4438 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4439 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4439 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_4440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_4440 PF00005 ABC transporter Varpa_4441 PF00005 ABC transporter Varpa_4441 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_4442 PF01979 Amidohydrolase family Varpa_4443 PF07683 Cobalamin synthesis protein cobW C-terminal domain Varpa_4443 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_4456 PF13091 PLD-like domain Varpa_4457 PF01541 GIY-YIG catalytic domain Varpa_4463 PF00709 Adenylosuccinate synthetase Varpa_4464 PF04552 Sigma-54, DNA binding domain Varpa_4464 PF04963 Sigma-54 factor, core binding domain Varpa_4464 PF00309 Sigma-54 factor, Activator interacting domain (AID) Varpa_4466 PF00571 CBS domain Varpa_4466 PF01595 Cyclin M transmembrane N-terminal domain Varpa_4466 PF03471 Transporter associated domain Varpa_4467 PF00149 Calcineurin-like phosphoesterase Varpa_4468 PF01546 Peptidase family M20/M25/M40 Varpa_4469 PF13302 Acetyltransferase (GNAT) domain Varpa_4470 PF00392 Bacterial regulatory proteins, gntR family Varpa_4470 PF00155 Aminotransferase class I and II Varpa_4471 PF00072 Response regulator receiver domain Varpa_4471 PF00196 Bacterial regulatory proteins, luxR family Varpa_4474 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_4475 PF00296 Luciferase-like monooxygenase Varpa_4477 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Varpa_4477 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_4477 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_4478 PF09084 NMT1/THI5 like Varpa_4479 PF05995 Cysteine dioxygenase type I Varpa_4482 PF00270 DEAD/DEAH box helicase Varpa_4482 PF00271 Helicase conserved C-terminal domain Varpa_4483 PF04228 Putative neutral zinc metallopeptidase Varpa_4484 PF00692 dUTPase Varpa_4485 PF01979 Amidohydrolase family Varpa_4486 PF02608 ABC transporter substrate-binding protein PnrA-like Varpa_4487 PF00106 short chain dehydrogenase Varpa_4488 PF01965 DJ-1/PfpI family Varpa_4489 PF07690 Major Facilitator Superfamily Varpa_4490 PF01804 Penicillin amidase Varpa_4491 PF12833 Helix-turn-helix domain Varpa_4491 PF02311 AraC-like ligand binding domain Varpa_4492 PF03466 LysR substrate binding domain Varpa_4492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4493 PF07690 Major Facilitator Superfamily Varpa_4494 PF00962 Adenosine/AMP deaminase Varpa_4495 PF01965 DJ-1/PfpI family Varpa_4496 PF01965 DJ-1/PfpI family Varpa_4498 PF04909 Amidohydrolase Varpa_4499 PF02515 CoA-transferase family III Varpa_4500 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4501 PF03328 HpcH/HpaI aldolase/citrate lyase family Varpa_4502 PF03466 LysR substrate binding domain Varpa_4502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4503 PF03707 Bacterial signalling protein N terminal repeat Varpa_4503 PF00990 Diguanylate cyclase, GGDEF domain Varpa_4503 PF00563 EAL domain Varpa_4504 PF00437 Type II/IV secretion system protein Varpa_4505 PF00990 Diguanylate cyclase, GGDEF domain Varpa_4505 PF10442 FIST C domain Varpa_4505 PF08495 FIST N domain Varpa_4505 PF00563 EAL domain Varpa_4507 PF02608 ABC transporter substrate-binding protein PnrA-like Varpa_4511 PF00860 Permease family Varpa_4512 PF03466 LysR substrate binding domain Varpa_4512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4513 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_4513 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Varpa_4514 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_4514 PF01799 [2Fe-2S] binding domain Varpa_4515 PF07690 Major Facilitator Superfamily Varpa_4517 PF03621 MbtH-like protein Varpa_4519 PF13193 AMP-binding enzyme C-terminal domain Varpa_4519 PF00501 AMP-binding enzyme Varpa_4519 PF00668 Condensation domain Varpa_4519 PF00975 Thioesterase domain Varpa_4519 PF00550 Phosphopantetheine attachment site Varpa_4520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4520 PF03466 LysR substrate binding domain Varpa_4521 PF07995 Glucose / Sorbosone dehydrogenase Varpa_4527 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_4529 PF01451 Low molecular weight phosphotyrosine protein phosphatase Varpa_4531 PF00690 Cation transporter/ATPase, N-terminus Varpa_4531 PF00689 Cation transporting ATPase, C-terminus Varpa_4532 PF02308 MgtC family Varpa_4533 PF00171 Aldehyde dehydrogenase family Varpa_4534 PF13660 Domain of unknown function (DUF4147) Varpa_4534 PF05161 MOFRL family Varpa_4538 PF00576 HIUase/Transthyretin family Varpa_4539 PF07729 FCD domain Varpa_4539 PF00392 Bacterial regulatory proteins, gntR family Varpa_4541 PF01546 Peptidase family M20/M25/M40 Varpa_4541 PF07687 Peptidase dimerisation domain Varpa_4542 PF07687 Peptidase dimerisation domain Varpa_4542 PF01546 Peptidase family M20/M25/M40 Varpa_4548 PF04185 Phosphoesterase family Varpa_4559 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Varpa_4560 PF01177 Asp/Glu/Hydantoin racemase Varpa_4562 PF00860 Permease family Varpa_4563 PF00248 Aldo/keto reductase family Varpa_4565 PF00375 Sodium:dicarboxylate symporter family Varpa_4567 PF01594 AI-2E family transporter Varpa_4570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4570 PF03466 LysR substrate binding domain Varpa_4571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_4571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_4571 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_4572 PF01261 Xylose isomerase-like TIM barrel Varpa_4573 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_4573 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_4574 PF04820 Tryptophan halogenase Varpa_4575 PF00390 Malic enzyme, N-terminal domain Varpa_4575 PF01515 Phosphate acetyl/butaryl transferase Varpa_4575 PF03949 Malic enzyme, NAD binding domain Varpa_4578 PF00665 Integrase core domain Varpa_4578 PF13276 HTH-like domain Varpa_4578 PF01527 Transposase Varpa_4582 PF04717 Type VI secretion system, phage-baseplate injector Varpa_4584 PF00005 ABC transporter Varpa_4585 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4588 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4589 PF00072 Response regulator receiver domain Varpa_4589 PF00486 Transcriptional regulatory protein, C terminal Varpa_4593 PF01638 HxlR-like helix-turn-helix Varpa_4595 PF01037 Lrp/AsnC ligand binding domain Varpa_4596 PF01266 FAD dependent oxidoreductase Varpa_4597 PF00355 Rieske [2Fe-2S] domain Varpa_4599 PF14437 MafB19-like deaminase Varpa_4600 PF01774 UreD urease accessory protein Varpa_4605 PF08753 NikR C terminal nickel binding domain Varpa_4605 PF01402 Ribbon-helix-helix protein, copG family Varpa_4607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4607 PF03466 LysR substrate binding domain Varpa_4610 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4611 PF01053 Cys/Met metabolism PLP-dependent enzyme Varpa_4614 PF07687 Peptidase dimerisation domain Varpa_4614 PF01546 Peptidase family M20/M25/M40 Varpa_4616 PF01527 Transposase Varpa_4617 PF04328 Selenoprotein, putative Varpa_4618 PF13722 5TM C-terminal transporter carbon starvation CstA Varpa_4618 PF02554 Carbon starvation protein CstA Varpa_4619 PF00793 DAHP synthetase I family Varpa_4620 PF00877 NlpC/P60 family Varpa_4622 PF12833 Helix-turn-helix domain Varpa_4622 PF14525 AraC-binding-like domain Varpa_4626 PF12852 Cupin Varpa_4626 PF12833 Helix-turn-helix domain Varpa_4627 PF00106 short chain dehydrogenase Varpa_4629 PF03466 LysR substrate binding domain Varpa_4629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4631 PF08450 SMP-30/Gluconolactonase/LRE-like region Varpa_4634 PF00141 Peroxidase Varpa_4635 PF00072 Response regulator receiver domain Varpa_4635 PF00196 Bacterial regulatory proteins, luxR family Varpa_4636 PF07730 Histidine kinase Varpa_4636 PF17200 Single Cache domain 2 Varpa_4638 PF07690 Major Facilitator Superfamily Varpa_4640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4640 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4640 PF00672 HAMP domain Varpa_4641 PF00072 Response regulator receiver domain Varpa_4641 PF00486 Transcriptional regulatory protein, C terminal Varpa_4642 PF00873 AcrB/AcrD/AcrF family Varpa_4643 PF13533 Biotin-lipoyl like Varpa_4644 PF02321 Outer membrane efflux protein Varpa_4645 PF00248 Aldo/keto reductase family Varpa_4646 PF07690 Major Facilitator Superfamily Varpa_4647 PF00005 ABC transporter Varpa_4648 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_4648 PF00005 ABC transporter Varpa_4649 PF02653 Branched-chain amino acid transport system / permease component Varpa_4650 PF02653 Branched-chain amino acid transport system / permease component Varpa_4653 PF00202 Aminotransferase class-III Varpa_4654 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4654 PF03466 LysR substrate binding domain Varpa_4656 PF03976 Polyphosphate kinase 2 (PPK2) Varpa_4657 PF01384 Phosphate transporter family Varpa_4659 PF02811 PHP domain Varpa_4661 PF01300 Telomere recombination Varpa_4662 PF02163 Peptidase family M50 Varpa_4663 PF00579 tRNA synthetases class I (W and Y) Varpa_4664 PF00072 Response regulator receiver domain Varpa_4664 PF00196 Bacterial regulatory proteins, luxR family Varpa_4665 PF00672 HAMP domain Varpa_4665 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4665 PF18698 Histidine kinase sensor domain Varpa_4667 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Varpa_4668 PF00072 Response regulator receiver domain Varpa_4668 PF00486 Transcriptional regulatory protein, C terminal Varpa_4671 PF06082 Exopolysaccharide biosynthesis protein YbjH Varpa_4673 PF02719 Polysaccharide biosynthesis protein Varpa_4674 PF02706 Chain length determinant protein Varpa_4674 PF13807 G-rich domain on putative tyrosine kinase Varpa_4674 PF13614 AAA domain Varpa_4675 PF01451 Low molecular weight phosphotyrosine protein phosphatase Varpa_4678 PF02397 Bacterial sugar transferase Varpa_4679 PF01370 NAD dependent epimerase/dehydratase family Varpa_4681 PF16363 GDP-mannose 4,6 dehydratase Varpa_4682 PF00534 Glycosyl transferases group 1 Varpa_4682 PF13439 Glycosyltransferase Family 4 Varpa_4686 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Varpa_4687 PF00132 Bacterial transferase hexapeptide (six repeats) Varpa_4688 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Varpa_4688 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Varpa_4689 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Varpa_4689 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Varpa_4689 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Varpa_4690 PF10531 SLBB domain Varpa_4690 PF02563 Polysaccharide biosynthesis/export protein Varpa_4691 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Varpa_4691 PF02403 Seryl-tRNA synthetase N-terminal domain Varpa_4692 PF13291 ACT domain Varpa_4692 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_4693 PF02401 LytB protein Varpa_4694 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_4695 PF04002 RadC-like JAB domain Varpa_4696 PF01713 Smr domain Varpa_4697 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_4697 PF14759 Reductase C-terminal Varpa_4699 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Varpa_4699 PF07055 Enoyl reductase FAD binding domain Varpa_4699 PF12241 Trans-2-enoyl-CoA reductase catalytic region Varpa_4700 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_4701 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4702 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4703 PF00005 ABC transporter Varpa_4705 PF12833 Helix-turn-helix domain Varpa_4705 PF06719 AraC-type transcriptional regulator N-terminus Varpa_4706 PF10518 TAT (twin-arginine translocation) pathway signal sequence Varpa_4706 PF01799 [2Fe-2S] binding domain Varpa_4706 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_4707 PF03450 CO dehydrogenase flavoprotein C-terminal domain Varpa_4707 PF00941 FAD binding domain in molybdopterin dehydrogenase Varpa_4708 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Varpa_4708 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Varpa_4709 PF13419 Haloacid dehalogenase-like hydrolase Varpa_4710 PF07690 Major Facilitator Superfamily Varpa_4710 PF00083 Sugar (and other) transporter Varpa_4711 PF06481 COX Aromatic Rich Motif Varpa_4711 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Varpa_4712 PF00115 Cytochrome C and Quinol oxidase polypeptide I Varpa_4713 PF00510 Cytochrome c oxidase subunit III Varpa_4714 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Varpa_4716 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4717 PF00072 Response regulator receiver domain Varpa_4720 PF07690 Major Facilitator Superfamily Varpa_4721 PF03466 LysR substrate binding domain Varpa_4721 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4726 PF02769 AIR synthase related protein, C-terminal domain Varpa_4726 PF00586 AIR synthase related protein, N-terminal domain Varpa_4728 PF00005 ABC transporter Varpa_4729 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4730 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4731 PF00581 Rhodanese-like domain Varpa_4732 PF02634 FdhD/NarQ family Varpa_4734 PF00384 Molybdopterin oxidoreductase Varpa_4736 PF03459 TOBE domain Varpa_4736 PF00005 ABC transporter Varpa_4738 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4740 PF03459 TOBE domain Varpa_4741 PF07690 Major Facilitator Superfamily Varpa_4742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4742 PF03466 LysR substrate binding domain Varpa_4743 PF10609 NUBPL iron-transfer P-loop NTPase Varpa_4746 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_4747 PF07687 Peptidase dimerisation domain Varpa_4747 PF01546 Peptidase family M20/M25/M40 Varpa_4748 PF01037 Lrp/AsnC ligand binding domain Varpa_4750 PF04337 Protein of unknown function, DUF480 Varpa_4751 PF09992 Phosphodiester glycosidase Varpa_4752 PF18324 Hypothetical protein TT1725 Varpa_4752 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_4753 PF09334 tRNA synthetases class I (M) Varpa_4753 PF01588 Putative tRNA binding domain Varpa_4755 PF01740 STAS domain Varpa_4755 PF00916 Sulfate permease family Varpa_4758 PF02616 Segregation and condensation protein ScpA Varpa_4759 PF02910 Fumarate reductase flavoprotein C-term Varpa_4759 PF00890 FAD binding domain Varpa_4760 PF02548 Ketopantoate hydroxymethyltransferase Varpa_4761 PF02569 Pantoate-beta-alanine ligase Varpa_4764 PF02445 Quinolinate synthetase A protein Varpa_4765 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Varpa_4765 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Varpa_4766 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Varpa_4766 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Varpa_4767 PF02556 Preprotein translocase subunit SecB Varpa_4768 PF00462 Glutaredoxin Varpa_4769 PF00581 Rhodanese-like domain Varpa_4770 PF00300 Histidine phosphatase superfamily (branch 1) Varpa_4771 PF13180 PDZ domain Varpa_4771 PF03572 Peptidase family S41 Varpa_4772 PF00899 ThiF family Varpa_4773 PF05170 AsmA family Varpa_4775 PF00072 Response regulator receiver domain Varpa_4775 PF00196 Bacterial regulatory proteins, luxR family Varpa_4776 PF05231 MASE1 Varpa_4776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4776 PF07730 Histidine kinase Varpa_4782 PF04972 BON domain Varpa_4783 PF05532 CsbD-like Varpa_4785 PF00893 Small Multidrug Resistance protein Varpa_4787 PF01227 GTP cyclohydrolase I Varpa_4789 PF00293 NUDIX domain Varpa_4792 PF02938 GAD domain Varpa_4792 PF00152 tRNA synthetases class II (D, K and N) Varpa_4792 PF01336 OB-fold nucleic acid binding domain Varpa_4795 PF00474 Sodium:solute symporter family Varpa_4796 PF03109 ABC1 family Varpa_4799 PF01209 ubiE/COQ5 methyltransferase family Varpa_4804 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_4804 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Varpa_4805 PF13416 Bacterial extracellular solute-binding protein Varpa_4806 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4807 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_4808 PF17912 MalK OB fold domain Varpa_4808 PF00005 ABC transporter Varpa_4809 PF03009 Glycerophosphoryl diester phosphodiesterase family Varpa_4810 PF12795 Mechanosensitive ion channel porin domain Varpa_4810 PF00924 Mechanosensitive ion channel Varpa_4810 PF12794 Mechanosensitive ion channel inner membrane domain 1 Varpa_4811 PF01037 Lrp/AsnC ligand binding domain Varpa_4813 PF02653 Branched-chain amino acid transport system / permease component Varpa_4814 PF00005 ABC transporter Varpa_4817 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Varpa_4817 PF01488 Shikimate / quinate 5-dehydrogenase Varpa_4817 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Varpa_4818 PF00472 RF-1 domain Varpa_4818 PF03462 PCRF domain Varpa_4819 PF17827 PrmC N-terminal domain Varpa_4819 PF05175 Methyltransferase small domain Varpa_4820 PF00462 Glutaredoxin Varpa_4822 PF00571 CBS domain Varpa_4822 PF03471 Transporter associated domain Varpa_4822 PF01595 Cyclin M transmembrane N-terminal domain Varpa_4823 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Varpa_4823 PF01464 Transglycosylase SLT domain Varpa_4824 PF03129 Anticodon binding domain Varpa_4824 PF04073 Aminoacyl-tRNA editing domain Varpa_4824 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Varpa_4825 PF00293 NUDIX domain Varpa_4827 PF01472 PUA domain Varpa_4827 PF00696 Amino acid kinase family Varpa_4828 PF01926 50S ribosome-binding GTPase Varpa_4828 PF01018 GTP1/OBG Varpa_4829 PF01016 Ribosomal L27 protein Varpa_4830 PF00829 Ribosomal prokaryotic L21 protein Varpa_4831 PF00348 Polyprenyl synthetase Varpa_4832 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Varpa_4832 PF00437 Type II/IV secretion system protein Varpa_4833 PF00482 Type II secretion system (T2SS), protein F Varpa_4834 PF06750 Bacterial Peptidase A24 N-terminal domain Varpa_4834 PF01478 Type IV leader peptidase family Varpa_4835 PF01121 Dephospho-CoA kinase Varpa_4836 PF03062 MBOAT, membrane-bound O-acyltransferase family Varpa_4839 PF03884 DNA gyrase inhibitor YacG Varpa_4840 PF01757 Acyltransferase family Varpa_4841 PF00293 NUDIX domain Varpa_4843 PF01960 ArgJ family Varpa_4844 PF02810 SEC-C motif Varpa_4844 PF01043 SecA preprotein cross-linking domain Varpa_4844 PF07516 SecA Wing and Scaffold domain Varpa_4844 PF07517 SecA DEAD-like domain Varpa_4846 PF02423 Ornithine cyclodeaminase/mu-crystallin family Varpa_4847 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_4848 PF08348 YheO-like PAS domain Varpa_4848 PF13309 HTH domain Varpa_4849 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4850 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_4851 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4851 PF03466 LysR substrate binding domain Varpa_4853 PF00072 Response regulator receiver domain Varpa_4854 PF01627 Hpt domain Varpa_4854 PF00672 HAMP domain Varpa_4854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4854 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Varpa_4854 PF00072 Response regulator receiver domain Varpa_4854 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4855 PF00547 Urease, gamma subunit Varpa_4857 PF00699 Urease beta subunit Varpa_4858 PF01979 Amidohydrolase family Varpa_4858 PF00449 Urease alpha-subunit, N-terminal domain Varpa_4861 PF02814 UreE urease accessory protein, N-terminal domain Varpa_4861 PF05194 UreE urease accessory protein, C-terminal domain Varpa_4862 PF01730 UreF Varpa_4863 PF02492 CobW/HypB/UreG, nucleotide-binding domain Varpa_4866 PF13609 Gram-negative porin Varpa_4868 PF01103 Surface antigen Varpa_4868 PF07244 Surface antigen variable number repeat Varpa_4869 PF00072 Response regulator receiver domain Varpa_4869 PF00486 Transcriptional regulatory protein, C terminal Varpa_4873 PF00672 HAMP domain Varpa_4873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_4873 PF00512 His Kinase A (phospho-acceptor) domain Varpa_4874 PF00072 Response regulator receiver domain Varpa_4874 PF00486 Transcriptional regulatory protein, C terminal Varpa_4875 PF12805 FUSC-like inner membrane protein yccS Varpa_4877 PF01027 Inhibitor of apoptosis-promoting Bax1 Varpa_4878 PF02082 Transcriptional regulator Varpa_4879 PF00529 HlyD membrane-fusion protein of T1SS Varpa_4879 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_4880 PF00873 AcrB/AcrD/AcrF family Varpa_4883 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_4884 PF00694 Aconitase C-terminal domain Varpa_4885 PF00330 Aconitase family (aconitate hydratase) Varpa_4886 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4887 PF03466 LysR substrate binding domain Varpa_4890 PF03466 LysR substrate binding domain Varpa_4890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4891 PF00881 Nitroreductase family Varpa_4892 PF00793 DAHP synthetase I family Varpa_4894 PF00557 Metallopeptidase family M24 Varpa_4898 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Varpa_4898 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Varpa_4899 PF02447 GntP family permease Varpa_4900 PF00356 Bacterial regulatory proteins, lacI family Varpa_4900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Varpa_4901 PF01738 Dienelactone hydrolase family Varpa_4902 PF01613 Flavin reductase like domain Varpa_4905 PF14525 AraC-binding-like domain Varpa_4905 PF12833 Helix-turn-helix domain Varpa_4906 PF03741 Integral membrane protein TerC family Varpa_4912 PF05567 Neisseria PilC beta-propeller domain Varpa_4916 PF00114 Pilin (bacterial filament) Varpa_4916 PF07963 Prokaryotic N-terminal methylation motif Varpa_4917 PF00114 Pilin (bacterial filament) Varpa_4917 PF07963 Prokaryotic N-terminal methylation motif Varpa_4918 PF03466 LysR substrate binding domain Varpa_4918 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4919 PF01047 MarR family Varpa_4920 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_4923 PF03466 LysR substrate binding domain Varpa_4923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4924 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_4924 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_4924 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_4930 PF00437 Type II/IV secretion system protein Varpa_4931 PF07660 Secretin and TonB N terminus short domain Varpa_4931 PF03958 Bacterial type II/III secretion system short domain Varpa_4931 PF00263 Bacterial type II and III secretion system protein Varpa_4931 PF11741 AMIN domain Varpa_4938 PF12833 Helix-turn-helix domain Varpa_4938 PF02311 AraC-like ligand binding domain Varpa_4940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4940 PF03466 LysR substrate binding domain Varpa_4942 PF03466 LysR substrate binding domain Varpa_4942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4943 PF03466 LysR substrate binding domain Varpa_4945 PF01047 MarR family Varpa_4946 PF12951 Passenger-associated-transport-repeat Varpa_4948 PF00072 Response regulator receiver domain Varpa_4948 PF00486 Transcriptional regulatory protein, C terminal Varpa_4949 PF00149 Calcineurin-like phosphoesterase Varpa_4950 PF03466 LysR substrate binding domain Varpa_4950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_4951 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_4952 PF01425 Amidase Varpa_4953 PF03449 Transcription elongation factor, N-terminal Varpa_4953 PF01272 Transcription elongation factor, GreA/GreB, C-term Varpa_4955 PF06969 HemN C-terminal domain Varpa_4955 PF04055 Radical SAM superfamily Varpa_4956 PF01725 Ham1 family Varpa_4957 PF01138 3' exoribonuclease family, domain 1 Varpa_4957 PF03725 3' exoribonuclease family, domain 2 Varpa_4959 PF03793 PASTA domain Varpa_4959 PF00069 Protein kinase domain Varpa_4960 PF03755 YicC-like family, N-terminal region Varpa_4960 PF08340 Domain of unknown function (DUF1732) Varpa_4961 PF00625 Guanylate kinase Varpa_4962 PF01192 RNA polymerase Rpb6 Varpa_4963 PF02824 TGS domain Varpa_4963 PF04607 Region found in RelA / SpoT proteins Varpa_4963 PF13291 ACT domain Varpa_4964 PF01272 Transcription elongation factor, GreA/GreB, C-term Varpa_4964 PF03449 Transcription elongation factor, N-terminal Varpa_4966 PF03741 Integral membrane protein TerC family Varpa_4967 PF02423 Ornithine cyclodeaminase/mu-crystallin family Varpa_4969 PF01177 Asp/Glu/Hydantoin racemase Varpa_4970 PF01312 FlhB HrpN YscU SpaS Family Varpa_4971 PF01311 Bacterial export proteins, family 1 Varpa_4973 PF02874 ATP synthase alpha/beta family, beta-barrel domain Varpa_4973 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Varpa_4973 PF18269 T3SS EscN ATPase C-terminal domain Varpa_4976 PF01514 Secretory protein of YscJ/FliF family Varpa_4982 PF01313 Bacterial export proteins, family 3 Varpa_4983 PF00771 FHIPEP family Varpa_4985 PF00813 FliP family Varpa_4988 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Varpa_4988 PF01628 HrcA protein C terminal domain Varpa_4989 PF01513 ATP-NAD kinase Varpa_4990 PF02463 RecF/RecN/SMC N terminal domain Varpa_4991 PF03668 P-loop ATPase protein family Varpa_4992 PF00730 HhH-GPD superfamily base excision DNA repair protein Varpa_4992 PF14815 NUDIX domain Varpa_4992 PF00633 Helix-hairpin-helix motif Varpa_4993 PF00350 Dynamin family Varpa_4994 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Varpa_4994 PF06827 Zinc finger found in FPG and IleRS Varpa_4994 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Varpa_4997 PF08544 GHMP kinases C terminal Varpa_4997 PF00288 GHMP kinases N terminal domain Varpa_4998 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Varpa_4998 PF14572 Phosphoribosyl synthetase-associated domain Varpa_4999 PF14693 Ribosomal protein TL5, C-terminal domain Varpa_4999 PF01386 Ribosomal L25p family Varpa_5000 PF01195 Peptidyl-tRNA hydrolase Varpa_5002 PF00037 4Fe-4S binding domain Varpa_5003 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5004 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5004 PF12911 N-terminal TM domain of oligopeptide transport permease C Varpa_5005 PF00005 ABC transporter Varpa_5005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_5006 PF00005 ABC transporter Varpa_5006 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Varpa_5007 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_5008 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_5009 PF01425 Amidase Varpa_5011 PF03466 LysR substrate binding domain Varpa_5011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5014 PF00300 Histidine phosphatase superfamily (branch 1) Varpa_5016 PF12697 Alpha/beta hydrolase family Varpa_5017 PF01470 Pyroglutamyl peptidase Varpa_5019 PF02626 Carboxyltransferase domain, subdomain A and B Varpa_5020 PF02682 Carboxyltransferase domain, subdomain C and D Varpa_5021 PF01467 Cytidylyltransferase-like Varpa_5025 PF05193 Peptidase M16 inactive domain Varpa_5026 PF00675 Insulinase (Peptidase family M16) Varpa_5026 PF05193 Peptidase M16 inactive domain Varpa_5027 PF02881 SRP54-type protein, helical bundle domain Varpa_5027 PF00448 SRP54-type protein, GTPase domain Varpa_5028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5028 PF00072 Response regulator receiver domain Varpa_5028 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5028 PF09456 RcsC Alpha-Beta-Loop (ABL) Varpa_5029 PF00072 Response regulator receiver domain Varpa_5029 PF00196 Bacterial regulatory proteins, luxR family Varpa_5031 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Varpa_5033 PF00027 Cyclic nucleotide-binding domain Varpa_5033 PF13545 Crp-like helix-turn-helix domain Varpa_5037 PF13533 Biotin-lipoyl like Varpa_5038 PF00005 ABC transporter Varpa_5038 PF00664 ABC transporter transmembrane region Varpa_5039 PF02321 Outer membrane efflux protein Varpa_5041 PF04545 Sigma-70, region 4 Varpa_5041 PF04542 Sigma-70 region 2 Varpa_5041 PF00140 Sigma-70 factor, region 1.2 Varpa_5042 PF08713 DNA alkylation repair enzyme Varpa_5043 PF02630 SCO1/SenC Varpa_5044 PF01040 UbiA prenyltransferase family Varpa_5049 PF00510 Cytochrome c oxidase subunit III Varpa_5051 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Varpa_5053 PF00115 Cytochrome C and Quinol oxidase polypeptide I Varpa_5054 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Varpa_5054 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Varpa_5056 PF08241 Methyltransferase domain Varpa_5058 PF00588 SpoU rRNA Methylase family Varpa_5061 PF10609 NUBPL iron-transfer P-loop NTPase Varpa_5061 PF01883 Iron-sulfur cluster assembly protein Varpa_5062 PF02525 Flavodoxin-like fold Varpa_5063 PF02254 TrkA-N domain Varpa_5063 PF00999 Sodium/hydrogen exchanger family Varpa_5065 PF00378 Enoyl-CoA hydratase/isomerase Varpa_5066 PF00550 Phosphopantetheine attachment site Varpa_5066 PF00501 AMP-binding enzyme Varpa_5066 PF07993 Male sterility protein Varpa_5067 PF00106 short chain dehydrogenase Varpa_5068 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5069 PF12806 Acetyl-CoA dehydrogenase C-terminal like Varpa_5069 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5069 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5069 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5072 PF06983 3-demethylubiquinone-9 3-methyltransferase Varpa_5074 PF07690 Major Facilitator Superfamily Varpa_5075 PF07237 Protein of unknown function (DUF1428) Varpa_5077 PF00775 Dioxygenase Varpa_5077 PF04444 Catechol dioxygenase N terminus Varpa_5079 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_5090 PF00115 Cytochrome C and Quinol oxidase polypeptide I Varpa_5092 PF03466 LysR substrate binding domain Varpa_5092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5095 PF00672 HAMP domain Varpa_5095 PF00211 Adenylate and Guanylate cyclase catalytic domain Varpa_5095 PF02743 Cache domain Varpa_5097 PF00465 Iron-containing alcohol dehydrogenase Varpa_5098 PF01494 FAD binding domain Varpa_5100 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5102 PF01137 RNA 3'-terminal phosphate cyclase Varpa_5102 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain Varpa_5103 PF10127 RNA repair pathway DNA polymerase beta family Varpa_5105 PF01139 tRNA-splicing ligase RtcB Varpa_5107 PF00158 Sigma-54 interaction domain Varpa_5107 PF06956 Regulator of RNA terminal phosphate cyclase Varpa_5110 PF12146 Serine aminopeptidase, S33 Varpa_5115 PF00136 DNA polymerase family B Varpa_5115 PF03104 DNA polymerase family B, exonuclease domain Varpa_5116 PF04055 Radical SAM superfamily Varpa_5119 PF13018 Extended Signal Peptide of Type V secretion system Varpa_5119 PF03797 Autotransporter beta-domain Varpa_5119 PF16168 Adhesin of bacterial autotransporter system, probable stalk Varpa_5122 PF00072 Response regulator receiver domain Varpa_5122 PF00196 Bacterial regulatory proteins, luxR family Varpa_5123 PF00072 Response regulator receiver domain Varpa_5123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5123 PF00672 HAMP domain Varpa_5123 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Varpa_5123 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5123 PF01627 Hpt domain Varpa_5128 PF00665 Integrase core domain Varpa_5128 PF13276 HTH-like domain Varpa_5129 PF01527 Transposase Varpa_5131 PF01527 Transposase Varpa_5132 PF00665 Integrase core domain Varpa_5132 PF13276 HTH-like domain Varpa_5132 PF13333 Integrase core domain Varpa_5137 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5138 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5139 PF02803 Thiolase, C-terminal domain Varpa_5139 PF00108 Thiolase, N-terminal domain Varpa_5140 PF01144 Coenzyme A transferase Varpa_5141 PF01144 Coenzyme A transferase Varpa_5142 PF09339 IclR helix-turn-helix domain Varpa_5142 PF01614 Bacterial transcriptional regulator Varpa_5143 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5151 PF13629 Pilus formation protein N terminal region Varpa_5151 PF00263 Bacterial type II and III secretion system protein Varpa_5151 PF04972 BON domain Varpa_5153 PF00437 Type II/IV secretion system protein Varpa_5161 PF00158 Sigma-54 interaction domain Varpa_5161 PF00072 Response regulator receiver domain Varpa_5161 PF02954 Bacterial regulatory protein, Fis family Varpa_5163 PF00529 HlyD membrane-fusion protein of T1SS Varpa_5163 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_5164 PF00664 ABC transporter transmembrane region Varpa_5164 PF00005 ABC transporter Varpa_5164 PF03412 Peptidase C39 family Varpa_5166 PF01225 Mur ligase family, catalytic domain Varpa_5166 PF02875 Mur ligase family, glutamate ligase domain Varpa_5166 PF08245 Mur ligase middle domain Varpa_5167 PF00691 OmpA family Varpa_5170 PF03466 LysR substrate binding domain Varpa_5170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5171 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Varpa_5171 PF00775 Dioxygenase Varpa_5173 PF00034 Cytochrome c Varpa_5174 PF01434 Peptidase family M41 Varpa_5174 PF17862 AAA+ lid domain Varpa_5174 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_5179 PF04357 TamB, inner membrane protein subunit of TAM complex Varpa_5182 PF02634 FdhD/NarQ family Varpa_5183 PF01568 Molydopterin dinucleotide binding domain Varpa_5183 PF00384 Molybdopterin oxidoreductase Varpa_5183 PF00037 4Fe-4S binding domain Varpa_5183 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Varpa_5183 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Varpa_5184 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Varpa_5184 PF00037 4Fe-4S binding domain Varpa_5184 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Varpa_5186 PF03466 LysR substrate binding domain Varpa_5186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5188 PF07690 Major Facilitator Superfamily Varpa_5190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5190 PF03466 LysR substrate binding domain Varpa_5191 PF02887 Pyruvate kinase, alpha/beta domain Varpa_5191 PF00224 Pyruvate kinase, barrel domain Varpa_5193 PF02558 Ketopantoate reductase PanE/ApbA Varpa_5193 PF08546 Ketopantoate reductase PanE/ApbA C terminal Varpa_5194 PF01557 Fumarylacetoacetate (FAA) hydrolase family Varpa_5195 PF02629 CoA binding domain Varpa_5195 PF00549 CoA-ligase Varpa_5196 PF08442 ATP-grasp domain Varpa_5196 PF00549 CoA-ligase Varpa_5197 PF13419 Haloacid dehalogenase-like hydrolase Varpa_5198 PF02515 CoA-transferase family III Varpa_5199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5199 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5199 PF00989 PAS fold Varpa_5200 PF02515 CoA-transferase family III Varpa_5201 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Varpa_5201 PF00205 Thiamine pyrophosphate enzyme, central domain Varpa_5201 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Varpa_5204 PF01970 Tripartite tricarboxylate transporter TctA family Varpa_5209 PF01381 Helix-turn-helix Varpa_5213 PF01638 HxlR-like helix-turn-helix Varpa_5216 PF01553 Acyltransferase Varpa_5217 PF01979 Amidohydrolase family Varpa_5218 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Varpa_5218 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Varpa_5219 PF00156 Phosphoribosyl transferase domain Varpa_5220 PF03652 Holliday junction resolvase Varpa_5221 PF02622 Uncharacterized ACR, COG1678 Varpa_5222 PF00875 DNA photolyase Varpa_5222 PF03441 FAD binding domain of DNA photolyase Varpa_5223 PF01584 CheW-like domain Varpa_5223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5223 PF01627 Hpt domain Varpa_5223 PF00072 Response regulator receiver domain Varpa_5224 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Varpa_5224 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Varpa_5226 PF00072 Response regulator receiver domain Varpa_5227 PF00072 Response regulator receiver domain Varpa_5228 PF00301 Rubredoxin Varpa_5230 PF00202 Aminotransferase class-III Varpa_5232 PF01808 AICARFT/IMPCHase bienzyme Varpa_5232 PF02142 MGS-like domain Varpa_5233 PF02954 Bacterial regulatory protein, Fis family Varpa_5234 PF01207 Dihydrouridine synthase (Dus) Varpa_5235 PF09335 SNARE associated Golgi protein Varpa_5237 PF13180 PDZ domain Varpa_5240 PF06071 Protein of unknown function (DUF933) Varpa_5240 PF01926 50S ribosome-binding GTPase Varpa_5241 PF13407 Periplasmic binding protein domain Varpa_5242 PF00005 ABC transporter Varpa_5243 PF02653 Branched-chain amino acid transport system / permease component Varpa_5244 PF00356 Bacterial regulatory proteins, lacI family Varpa_5245 PF00294 pfkB family carbohydrate kinase Varpa_5246 PF05025 RbsD / FucU transport protein family Varpa_5248 PF01494 FAD binding domain Varpa_5249 PF13098 Thioredoxin-like domain Varpa_5249 PF10411 Disulfide bond isomerase protein N-terminus Varpa_5252 PF00378 Enoyl-CoA hydratase/isomerase Varpa_5259 PF02630 SCO1/SenC Varpa_5261 PF13193 AMP-binding enzyme C-terminal domain Varpa_5261 PF00501 AMP-binding enzyme Varpa_5263 PF00149 Calcineurin-like phosphoesterase Varpa_5266 PF00108 Thiolase, N-terminal domain Varpa_5266 PF02803 Thiolase, C-terminal domain Varpa_5267 PF00106 short chain dehydrogenase Varpa_5268 PF17874 MalT-like TPR region Varpa_5268 PF00196 Bacterial regulatory proteins, luxR family Varpa_5271 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5271 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5271 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5272 PF02515 CoA-transferase family III Varpa_5278 PF04717 Type VI secretion system, phage-baseplate injector Varpa_5280 PF04116 Fatty acid hydroxylase superfamily Varpa_5284 PF05491 RuvB C-terminal winged helix domain Varpa_5284 PF17864 RuvB AAA lid domain Varpa_5284 PF05496 Holliday junction DNA helicase RuvB P-loop domain Varpa_5285 PF01066 CDP-alcohol phosphatidyltransferase Varpa_5286 PF12146 Serine aminopeptidase, S33 Varpa_5286 PF12147 Putative methyltransferase Varpa_5287 PF00782 Dual specificity phosphatase, catalytic domain Varpa_5293 PF07499 RuvA, C-terminal domain Varpa_5293 PF01330 RuvA N terminal domain Varpa_5294 PF02562 PhoH-like protein Varpa_5295 PF02130 Uncharacterized protein family UPF0054 Varpa_5296 PF02580 D-Tyr-tRNA(Tyr) deacylase Varpa_5297 PF16916 Dimerisation domain of Zinc Transporter Varpa_5297 PF01545 Cation efflux family Varpa_5302 PF03702 Anhydro-N-acetylmuramic acid kinase Varpa_5303 PF07690 Major Facilitator Superfamily Varpa_5304 PF01521 Iron-sulphur cluster biosynthesis Varpa_5305 PF00380 Ribosomal protein S9/S16 Varpa_5306 PF00572 Ribosomal protein L13 Varpa_5308 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Varpa_5309 PF03330 Lytic transglycolase Varpa_5310 PF02219 Methylenetetrahydrofolate reductase Varpa_5311 PF01728 FtsJ-like methyltransferase Varpa_5311 PF01479 S4 domain Varpa_5312 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Varpa_5312 PF05221 S-adenosyl-L-homocysteine hydrolase Varpa_5315 PF00561 alpha/beta hydrolase fold Varpa_5317 PF00561 alpha/beta hydrolase fold Varpa_5319 PF03144 Elongation factor Tu domain 2 Varpa_5319 PF00009 Elongation factor Tu GTP binding domain Varpa_5319 PF16658 Class II release factor RF3, C-terminal domain Varpa_5322 PF00005 ABC transporter Varpa_5326 PF02661 Fic/DOC family Varpa_5326 PF13784 Fic/DOC family N-terminal Varpa_5327 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5328 PF00850 Histone deacetylase domain Varpa_5329 PF02423 Ornithine cyclodeaminase/mu-crystallin family Varpa_5330 PF00005 ABC transporter Varpa_5330 PF17760 UvrA interaction domain Varpa_5330 PF17755 UvrA DNA-binding domain Varpa_5334 PF00083 Sugar (and other) transporter Varpa_5334 PF08946 Osmosensory transporter coiled coil Varpa_5338 PF01810 LysE type translocator Varpa_5339 PF00682 HMGL-like Varpa_5340 PF03466 LysR substrate binding domain Varpa_5340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5341 PF02515 CoA-transferase family III Varpa_5342 PF00775 Dioxygenase Varpa_5342 PF04444 Catechol dioxygenase N terminus Varpa_5344 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5345 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5346 PF00708 Acylphosphatase Varpa_5347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5347 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5348 PF02515 CoA-transferase family III Varpa_5349 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5351 PF09339 IclR helix-turn-helix domain Varpa_5351 PF01614 Bacterial transcriptional regulator Varpa_5352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Varpa_5355 PF00289 Biotin carboxylase, N-terminal domain Varpa_5355 PF00364 Biotin-requiring enzyme Varpa_5355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_5355 PF02785 Biotin carboxylase C-terminal domain Varpa_5357 PF00378 Enoyl-CoA hydratase/isomerase Varpa_5358 PF01039 Carboxyl transferase domain Varpa_5359 PF00501 AMP-binding enzyme Varpa_5359 PF13193 AMP-binding enzyme C-terminal domain Varpa_5360 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5364 PF13419 Haloacid dehalogenase-like hydrolase Varpa_5365 PF13667 ThiC-associated domain Varpa_5365 PF01964 Radical SAM ThiC family Varpa_5367 PF00072 Response regulator receiver domain Varpa_5367 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5367 PF09308 LuxQ, periplasmic Varpa_5367 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5368 PF00196 Bacterial regulatory proteins, luxR family Varpa_5369 PF01425 Amidase Varpa_5370 PF00149 Calcineurin-like phosphoesterase Varpa_5371 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5371 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5371 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5372 PF01546 Peptidase family M20/M25/M40 Varpa_5372 PF07687 Peptidase dimerisation domain Varpa_5373 PF00108 Thiolase, N-terminal domain Varpa_5373 PF02803 Thiolase, C-terminal domain Varpa_5374 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Varpa_5375 PF00484 Carbonic anhydrase Varpa_5376 PF13411 MerR HTH family regulatory protein Varpa_5379 PF00849 RNA pseudouridylate synthase Varpa_5381 PF00920 Dehydratase family Varpa_5382 PF01370 NAD dependent epimerase/dehydratase family Varpa_5383 PF00392 Bacterial regulatory proteins, gntR family Varpa_5383 PF07729 FCD domain Varpa_5384 PF03459 TOBE domain Varpa_5384 PF00005 ABC transporter Varpa_5384 PF17912 MalK OB fold domain Varpa_5386 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5387 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5393 PF02092 Glycyl-tRNA synthetase beta subunit Varpa_5393 PF05746 DALR anticodon binding domain Varpa_5394 PF02091 Glycyl-tRNA synthetase alpha subunit Varpa_5395 PF00781 Diacylglycerol kinase catalytic domain Varpa_5398 PF00710 Asparaginase, N-terminal Varpa_5398 PF17763 Glutaminase/Asparaginase C-terminal domain Varpa_5400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5400 PF03466 LysR substrate binding domain Varpa_5401 PF07690 Major Facilitator Superfamily Varpa_5402 PF07519 Tannase and feruloyl esterase Varpa_5403 PF00106 short chain dehydrogenase Varpa_5404 PF05853 beta-keto acid cleavage enzyme Varpa_5405 PF00005 ABC transporter Varpa_5406 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_5406 PF00005 ABC transporter Varpa_5408 PF02653 Branched-chain amino acid transport system / permease component Varpa_5409 PF13458 Periplasmic binding protein Varpa_5413 PF01979 Amidohydrolase family Varpa_5414 PF02633 Creatinine amidohydrolase Varpa_5416 PF00005 ABC transporter Varpa_5417 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5419 PF00795 Carbon-nitrogen hydrolase Varpa_5420 PF03471 Transporter associated domain Varpa_5420 PF00571 CBS domain Varpa_5422 PF01037 Lrp/AsnC ligand binding domain Varpa_5423 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Varpa_5424 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_5425 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Varpa_5426 PF13193 AMP-binding enzyme C-terminal domain Varpa_5426 PF00501 AMP-binding enzyme Varpa_5429 PF13091 PLD-like domain Varpa_5435 PF01914 MarC family integral membrane protein Varpa_5437 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5439 PF01494 FAD binding domain Varpa_5441 PF01435 Peptidase family M48 Varpa_5449 PF00202 Aminotransferase class-III Varpa_5450 PF00551 Formyl transferase Varpa_5455 PF00289 Biotin carboxylase, N-terminal domain Varpa_5455 PF02785 Biotin carboxylase C-terminal domain Varpa_5455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Varpa_5456 PF00501 AMP-binding enzyme Varpa_5456 PF13193 AMP-binding enzyme C-terminal domain Varpa_5457 PF00440 Bacterial regulatory proteins, tetR family Varpa_5458 PF13458 Periplasmic binding protein Varpa_5459 PF02371 Transposase IS116/IS110/IS902 family Varpa_5459 PF01548 Transposase Varpa_5460 PF00667 FAD binding domain Varpa_5460 PF00258 Flavodoxin Varpa_5460 PF00175 Oxidoreductase NAD-binding domain Varpa_5460 PF00067 Cytochrome P450 Varpa_5462 PF00440 Bacterial regulatory proteins, tetR family Varpa_5465 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain Varpa_5465 PF06974 Protein of unknown function (DUF1298) Varpa_5466 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Varpa_5466 PF00326 Prolyl oligopeptidase family Varpa_5467 PF00491 Arginase family Varpa_5469 PF00485 Phosphoribulokinase / Uridine kinase family Varpa_5470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Varpa_5470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Varpa_5472 PF01037 Lrp/AsnC ligand binding domain Varpa_5473 PF01168 Alanine racemase, N-terminal domain Varpa_5474 PF00437 Type II/IV secretion system protein Varpa_5475 PF00437 Type II/IV secretion system protein Varpa_5476 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_5476 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_5478 PF13580 SIS domain Varpa_5479 PF02021 Uncharacterised protein family UPF0102 Varpa_5480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Varpa_5483 PF08361 MAATS-type transcriptional repressor, C-terminal region Varpa_5483 PF00440 Bacterial regulatory proteins, tetR family Varpa_5484 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Varpa_5484 PF00529 HlyD membrane-fusion protein of T1SS Varpa_5485 PF00873 AcrB/AcrD/AcrF family Varpa_5486 PF02321 Outer membrane efflux protein Varpa_5496 PF00085 Thioredoxin Varpa_5497 PF00270 DEAD/DEAH box helicase Varpa_5497 PF08494 DEAD/H associated Varpa_5497 PF00271 Helicase conserved C-terminal domain Varpa_5498 PF01068 ATP dependent DNA ligase domain Varpa_5498 PF04679 ATP dependent DNA ligase C terminal region Varpa_5498 PF04675 DNA ligase N terminus Varpa_5499 PF04679 ATP dependent DNA ligase C terminal region Varpa_5499 PF01068 ATP dependent DNA ligase domain Varpa_5499 PF04675 DNA ligase N terminus Varpa_5502 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Varpa_5502 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Varpa_5503 PF13407 Periplasmic binding protein domain Varpa_5504 PF02653 Branched-chain amino acid transport system / permease component Varpa_5505 PF00005 ABC transporter Varpa_5506 PF01047 MarR family Varpa_5506 PF00480 ROK family Varpa_5507 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Varpa_5507 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Varpa_5508 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Varpa_5508 PF02874 ATP synthase alpha/beta family, beta-barrel domain Varpa_5509 PF00231 ATP synthase Varpa_5510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Varpa_5510 PF00306 ATP synthase alpha/beta chain, C terminal domain Varpa_5510 PF02874 ATP synthase alpha/beta family, beta-barrel domain Varpa_5511 PF00213 ATP synthase delta (OSCP) subunit Varpa_5512 PF00430 ATP synthase B/B' CF(0) Varpa_5513 PF00137 ATP synthase subunit C Varpa_5514 PF00119 ATP synthase A chain Varpa_5516 PF01063 Amino-transferase class IV Varpa_5517 PF04359 Protein of unknown function (DUF493) Varpa_5518 PF03099 Biotin/lipoate A/B protein ligase family Varpa_5519 PF04055 Radical SAM superfamily Varpa_5519 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Varpa_5523 PF04717 Type VI secretion system, phage-baseplate injector Varpa_5528 PF10431 C-terminal, D2-small domain, of ClpB protein Varpa_5528 PF07724 AAA domain (Cdc48 subfamily) Varpa_5528 PF17871 AAA lid domain Varpa_5528 PF00004 ATPase family associated with various cellular activities (AAA) Varpa_5540 PF04972 BON domain Varpa_5540 PF00691 OmpA family Varpa_5554 PF13193 AMP-binding enzyme C-terminal domain Varpa_5554 PF00501 AMP-binding enzyme Varpa_5555 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5555 PF00672 HAMP domain Varpa_5556 PF02954 Bacterial regulatory protein, Fis family Varpa_5556 PF00158 Sigma-54 interaction domain Varpa_5556 PF00072 Response regulator receiver domain Varpa_5558 PF07690 Major Facilitator Superfamily Varpa_5559 PF03600 Citrate transporter Varpa_5564 PF00419 Fimbrial protein Varpa_5565 PF13954 PapC N-terminal domain Varpa_5565 PF00577 Outer membrane usher protein Varpa_5565 PF13953 PapC C-terminal domain Varpa_5566 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Varpa_5566 PF02753 Pili assembly chaperone PapD, C-terminal domain Varpa_5567 PF00419 Fimbrial protein Varpa_5568 PF16884 N-terminal domain of oxidoreductase Varpa_5568 PF00107 Zinc-binding dehydrogenase Varpa_5569 PF00672 HAMP domain Varpa_5569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5569 PF16750 Sensor domain of 2-component histidine kinase Varpa_5569 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5570 PF00486 Transcriptional regulatory protein, C terminal Varpa_5570 PF00072 Response regulator receiver domain Varpa_5574 PF00391 PEP-utilising enzyme, mobile domain Varpa_5574 PF02896 PEP-utilising enzyme, TIM barrel domain Varpa_5574 PF05524 PEP-utilising enzyme, N-terminal Varpa_5575 PF00381 PTS HPr component phosphorylation site Varpa_5578 PF00578 AhpC/TSA family Varpa_5579 PF01322 Cytochrome C' Varpa_5582 PF08534 Redoxin Varpa_5583 PF00366 Ribosomal protein S17 Varpa_5584 PF00831 Ribosomal L29 protein Varpa_5585 PF00252 Ribosomal protein L16p/L10e Varpa_5586 PF00189 Ribosomal protein S3, C-terminal domain Varpa_5586 PF07650 KH domain Varpa_5587 PF00237 Ribosomal protein L22p/L17e Varpa_5588 PF00203 Ribosomal protein S19 Varpa_5589 PF00181 Ribosomal Proteins L2, RNA binding domain Varpa_5589 PF03947 Ribosomal Proteins L2, C-terminal domain Varpa_5590 PF00276 Ribosomal protein L23 Varpa_5591 PF00573 Ribosomal protein L4/L1 family Varpa_5592 PF00297 Ribosomal protein L3 Varpa_5595 PF00338 Ribosomal protein S10p/S20e Varpa_5596 PF03143 Elongation factor Tu C-terminal domain Varpa_5596 PF00009 Elongation factor Tu GTP binding domain Varpa_5596 PF03144 Elongation factor Tu domain 2 Varpa_5597 PF00009 Elongation factor Tu GTP binding domain Varpa_5597 PF00679 Elongation factor G C-terminus Varpa_5597 PF14492 Elongation Factor G, domain II Varpa_5597 PF03764 Elongation factor G, domain IV Varpa_5597 PF03144 Elongation factor Tu domain 2 Varpa_5598 PF00177 Ribosomal protein S7p/S5e Varpa_5599 PF00164 Ribosomal protein S12/S23 Varpa_5600 PF00768 D-alanyl-D-alanine carboxypeptidase Varpa_5600 PF07943 Penicillin-binding protein 5, C-terminal domain Varpa_5601 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Varpa_5605 PF00490 Delta-aminolevulinic acid dehydratase Varpa_5606 PF01544 CorA-like Mg2+ transporter protein Varpa_5609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5609 PF03466 LysR substrate binding domain Varpa_5610 PF01738 Dienelactone hydrolase family Varpa_5611 PF01323 DSBA-like thioredoxin domain Varpa_5613 PF01914 MarC family integral membrane protein Varpa_5616 PF00501 AMP-binding enzyme Varpa_5617 PF00005 ABC transporter Varpa_5618 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_5618 PF00005 ABC transporter Varpa_5620 PF02653 Branched-chain amino acid transport system / permease component Varpa_5622 PF07859 alpha/beta hydrolase fold Varpa_5623 PF02222 ATP-grasp domain Varpa_5624 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Varpa_5624 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Varpa_5627 PF03309 Type III pantothenate kinase Varpa_5628 PF04972 BON domain Varpa_5628 PF01476 LysM domain Varpa_5632 PF03480 Bacterial extracellular solute-binding protein, family 7 Varpa_5634 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_5634 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Varpa_5635 PF02896 PEP-utilising enzyme, TIM barrel domain Varpa_5635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Varpa_5635 PF00391 PEP-utilising enzyme, mobile domain Varpa_5636 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_5636 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Varpa_5637 PF02558 Ketopantoate reductase PanE/ApbA Varpa_5637 PF08546 Ketopantoate reductase PanE/ApbA C terminal Varpa_5638 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Varpa_5638 PF01048 Phosphorylase superfamily Varpa_5639 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5641 PF00067 Cytochrome P450 Varpa_5643 PF02798 Glutathione S-transferase, N-terminal domain Varpa_5644 PF03466 LysR substrate binding domain Varpa_5644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5647 PF00005 ABC transporter Varpa_5648 PF01061 ABC-2 type transporter Varpa_5649 PF01047 MarR family Varpa_5650 PF02566 OsmC-like protein Varpa_5652 PF01636 Phosphotransferase enzyme family Varpa_5653 PF03466 LysR substrate binding domain Varpa_5653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5654 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5654 PF18158 Adaptive response protein AidB N-terminal domain Varpa_5655 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5656 PF02515 CoA-transferase family III Varpa_5657 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Varpa_5657 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Varpa_5657 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Varpa_5662 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5663 PF05762 VWA domain containing CoxE-like protein Varpa_5665 PF07728 AAA domain (dynein-related subfamily) Varpa_5669 PF00183 Hsp90 protein Varpa_5669 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5672 PF03466 LysR substrate binding domain Varpa_5673 PF00698 Acyl transferase domain Varpa_5673 PF00107 Zinc-binding dehydrogenase Varpa_5673 PF08240 Alcohol dehydrogenase GroES-like domain Varpa_5673 PF02801 Beta-ketoacyl synthase, C-terminal domain Varpa_5673 PF08659 KR domain Varpa_5673 PF00550 Phosphopantetheine attachment site Varpa_5673 PF14765 Polyketide synthase dehydratase Varpa_5673 PF16197 Ketoacyl-synthetase C-terminal extension Varpa_5673 PF00109 Beta-ketoacyl synthase, N-terminal domain Varpa_5674 PF00230 Major intrinsic protein Varpa_5676 PF08521 Two-component sensor kinase N-terminal Varpa_5676 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5677 PF00072 Response regulator receiver domain Varpa_5677 PF00486 Transcriptional regulatory protein, C terminal Varpa_5679 PF01479 S4 domain Varpa_5679 PF00849 RNA pseudouridylate synthase Varpa_5680 PF00293 NUDIX domain Varpa_5680 PF01467 Cytidylyltransferase-like Varpa_5681 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Varpa_5682 PF04101 Glycosyltransferase family 28 C-terminal domain Varpa_5682 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Varpa_5686 PF00009 Elongation factor Tu GTP binding domain Varpa_5686 PF03144 Elongation factor Tu domain 2 Varpa_5686 PF00679 Elongation factor G C-terminus Varpa_5686 PF14492 Elongation Factor G, domain II Varpa_5686 PF03764 Elongation factor G, domain IV Varpa_5689 PF00486 Transcriptional regulatory protein, C terminal Varpa_5689 PF00072 Response regulator receiver domain Varpa_5690 PF02702 Osmosensitive K+ channel His kinase sensor domain Varpa_5690 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5690 PF13492 GAF domain Varpa_5690 PF13493 Domain of unknown function (DUF4118) Varpa_5693 PF02669 K+-transporting ATPase, c chain Varpa_5695 PF03814 Potassium-transporting ATPase A subunit Varpa_5697 PF13533 Biotin-lipoyl like Varpa_5698 PF00873 AcrB/AcrD/AcrF family Varpa_5699 PF02321 Outer membrane efflux protein Varpa_5701 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Varpa_5701 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Varpa_5703 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5704 PF16123 Hydroxyacylglutathione hydrolase C-terminus Varpa_5704 PF00753 Metallo-beta-lactamase superfamily Varpa_5706 PF00106 short chain dehydrogenase Varpa_5708 PF00027 Cyclic nucleotide-binding domain Varpa_5708 PF13545 Crp-like helix-turn-helix domain Varpa_5709 PF00501 AMP-binding enzyme Varpa_5710 PF12399 Branched-chain amino acid ATP-binding cassette transporter Varpa_5710 PF00005 ABC transporter Varpa_5715 PF00005 ABC transporter Varpa_5716 PF00501 AMP-binding enzyme Varpa_5716 PF13193 AMP-binding enzyme C-terminal domain Varpa_5717 PF16671 Actin cross-linking domain Varpa_5717 PF04717 Type VI secretion system, phage-baseplate injector Varpa_5723 PF00285 Citrate synthase, C-terminal domain Varpa_5724 PF00285 Citrate synthase, C-terminal domain Varpa_5725 PF01965 DJ-1/PfpI family Varpa_5726 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5728 PF00196 Bacterial regulatory proteins, luxR family Varpa_5728 PF00072 Response regulator receiver domain Varpa_5729 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Varpa_5729 PF13360 PQQ-like domain Varpa_5731 PF04717 Type VI secretion system, phage-baseplate injector Varpa_5731 PF16671 Actin cross-linking domain Varpa_5732 PF05593 RHS Repeat Varpa_5732 PF14220 Domain of unknown function (DUF4329) Varpa_5732 PF03527 RHS protein Varpa_5735 PF01011 PQQ enzyme repeat Varpa_5736 PF01325 Iron dependent repressor, N-terminal DNA binding domain Varpa_5736 PF00480 ROK family Varpa_5738 PF02653 Branched-chain amino acid transport system / permease component Varpa_5739 PF13407 Periplasmic binding protein domain Varpa_5741 PF00676 Dehydrogenase E1 component Varpa_5742 PF02780 Transketolase, C-terminal domain Varpa_5742 PF02779 Transketolase, pyrimidine binding domain Varpa_5744 PF03466 LysR substrate binding domain Varpa_5744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5745 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5748 PF01494 FAD binding domain Varpa_5750 PF00378 Enoyl-CoA hydratase/isomerase Varpa_5751 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Varpa_5751 PF02770 Acyl-CoA dehydrogenase, middle domain Varpa_5751 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Varpa_5752 PF13193 AMP-binding enzyme C-terminal domain Varpa_5752 PF00501 AMP-binding enzyme Varpa_5754 PF01965 DJ-1/PfpI family Varpa_5754 PF12833 Helix-turn-helix domain Varpa_5756 PF01196 Ribosomal protein L17 Varpa_5757 PF01000 RNA polymerase Rpb3/RpoA insert domain Varpa_5757 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Varpa_5757 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Varpa_5758 PF01479 S4 domain Varpa_5758 PF00163 Ribosomal protein S4/S9 N-terminal domain Varpa_5759 PF00411 Ribosomal protein S11 Varpa_5760 PF00416 Ribosomal protein S13/S18 Varpa_5761 PF00444 Ribosomal protein L36 Varpa_5762 PF00344 SecY translocase Varpa_5763 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Varpa_5764 PF00327 Ribosomal protein L30p/L7e Varpa_5765 PF00333 Ribosomal protein S5, N-terminal domain Varpa_5765 PF03719 Ribosomal protein S5, C-terminal domain Varpa_5766 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Varpa_5767 PF00347 Ribosomal protein L6 Varpa_5768 PF00410 Ribosomal protein S8 Varpa_5769 PF00253 Ribosomal protein S14p/S29e Varpa_5770 PF00281 Ribosomal protein L5 Varpa_5770 PF00673 ribosomal L5P family C-terminus Varpa_5771 PF00467 KOW motif Varpa_5771 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Varpa_5772 PF00238 Ribosomal protein L14p/L23e Varpa_5774 PF14748 Pyrroline-5-carboxylate reductase dimerisation Varpa_5774 PF03807 NADP oxidoreductase coenzyme F420-dependent Varpa_5775 PF01575 MaoC like domain Varpa_5776 PF01040 UbiA prenyltransferase family Varpa_5777 PF00210 Ferritin-like domain Varpa_5778 PF03466 LysR substrate binding domain Varpa_5778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5780 PF00654 Voltage gated chloride channel Varpa_5781 PF05662 Coiled stalk of trimeric autotransporter adhesin Varpa_5781 PF03895 YadA-like membrane anchor domain Varpa_5781 PF13018 Extended Signal Peptide of Type V secretion system Varpa_5781 PF05658 Head domain of trimeric autotransporter adhesin Varpa_5784 PF00082 Subtilase family Varpa_5784 PF12951 Passenger-associated-transport-repeat Varpa_5784 PF03797 Autotransporter beta-domain Varpa_5785 PF01810 LysE type translocator Varpa_5786 PF17191 RecG wedge domain Varpa_5786 PF00271 Helicase conserved C-terminal domain Varpa_5786 PF00270 DEAD/DEAH box helicase Varpa_5787 PF01370 NAD dependent epimerase/dehydratase family Varpa_5787 PF08338 Domain of unknown function (DUF1731) Varpa_5789 PF02547 Queuosine biosynthesis protein Varpa_5790 PF01702 Queuine tRNA-ribosyltransferase Varpa_5801 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Varpa_5804 PF00814 Glycoprotease family Varpa_5805 PF00455 DeoR C terminal sensor domain Varpa_5805 PF08220 DeoR-like helix-turn-helix domain Varpa_5806 PF00293 NUDIX domain Varpa_5807 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Varpa_5809 PF01300 Telomere recombination Varpa_5809 PF03481 Putative GTP-binding controlling metal-binding Varpa_5810 PF02222 ATP-grasp domain Varpa_5810 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Varpa_5811 PF00731 AIR carboxylase Varpa_5812 PF00085 Thioredoxin Varpa_5813 PF01381 Helix-turn-helix Varpa_5814 PF13657 HipA N-terminal domain Varpa_5814 PF07804 HipA-like C-terminal domain Varpa_5816 PF01259 SAICAR synthetase Varpa_5817 PF01116 Fructose-bisphosphate aldolase class-II Varpa_5819 PF01037 Lrp/AsnC ligand binding domain Varpa_5820 PF00291 Pyridoxal-phosphate dependent enzyme Varpa_5821 PF00224 Pyruvate kinase, barrel domain Varpa_5821 PF02887 Pyruvate kinase, alpha/beta domain Varpa_5822 PF00162 Phosphoglycerate kinase Varpa_5823 PF03466 LysR substrate binding domain Varpa_5823 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5826 PF01494 FAD binding domain Varpa_5829 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5832 PF00551 Formyl transferase Varpa_5832 PF02911 Formyl transferase, C-terminal domain Varpa_5834 PF01327 Polypeptide deformylase Varpa_5836 PF02481 DNA recombination-mediator protein A Varpa_5836 PF17782 DprA winged helix domain Varpa_5837 PF04361 Protein of unknown function (DUF494) Varpa_5839 PF02355 Protein export membrane protein Varpa_5839 PF07549 SecD/SecF GG Motif Varpa_5840 PF13721 SecD export protein N-terminal TM region Varpa_5840 PF02355 Protein export membrane protein Varpa_5840 PF07549 SecD/SecF GG Motif Varpa_5841 PF02699 Preprotein translocase subunit Varpa_5843 PF01037 Lrp/AsnC ligand binding domain Varpa_5848 PF00497 Bacterial extracellular solute-binding proteins, family 3 Varpa_5849 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5850 PF05977 Transmembrane secretion effector Varpa_5851 PF02633 Creatinine amidohydrolase Varpa_5852 PF00005 ABC transporter Varpa_5853 PF00528 Binding-protein-dependent transport system inner membrane component Varpa_5854 PF04030 D-arabinono-1,4-lactone oxidase Varpa_5854 PF01565 FAD binding domain Varpa_5857 PF00111 2Fe-2S iron-sulfur cluster binding domain Varpa_5857 PF00175 Oxidoreductase NAD-binding domain Varpa_5859 PF01042 Endoribonuclease L-PSP Varpa_5861 PF01261 Xylose isomerase-like TIM barrel Varpa_5862 PF00596 Class II Aldolase and Adducin N-terminal domain Varpa_5863 PF17042 Nucleotide-binding C-terminal domain Varpa_5863 PF07005 Sugar-binding N-terminal domain Varpa_5864 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Varpa_5864 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Varpa_5865 PF00456 Transketolase, thiamine diphosphate binding domain Varpa_5865 PF17831 Pyruvate dehydrogenase E1 component middle domain Varpa_5866 PF01037 Lrp/AsnC ligand binding domain Varpa_5872 PF00072 Response regulator receiver domain Varpa_5872 PF00196 Bacterial regulatory proteins, luxR family Varpa_5873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5873 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5873 PF00989 PAS fold Varpa_5874 PF00795 Carbon-nitrogen hydrolase Varpa_5876 PF08335 GlnD PII-uridylyltransferase Varpa_5876 PF03710 Glutamate-ammonia ligase adenylyltransferase Varpa_5877 PF03330 Lytic transglycolase Varpa_5877 PF05036 Sporulation related domain Varpa_5878 PF02627 Carboxymuconolactone decarboxylase family Varpa_5879 PF08281 Sigma-70, region 4 Varpa_5879 PF04542 Sigma-70 region 2 Varpa_5879 PF12680 SnoaL-like domain Varpa_5881 PF00255 Glutathione peroxidase Varpa_5882 PF01593 Flavin containing amine oxidoreductase Varpa_5886 PF00106 short chain dehydrogenase Varpa_5887 PF00043 Glutathione S-transferase, C-terminal domain Varpa_5887 PF13417 Glutathione S-transferase, N-terminal domain Varpa_5888 PF00206 Lyase Varpa_5888 PF08328 Adenylosuccinate lyase C-terminal Varpa_5890 PF07715 TonB-dependent Receptor Plug Domain Varpa_5890 PF07660 Secretin and TonB N terminus short domain Varpa_5890 PF00593 TonB dependent receptor Varpa_5891 PF07152 YaeQ protein Varpa_5894 PF03741 Integral membrane protein TerC family Varpa_5896 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Varpa_5897 PF01435 Peptidase family M48 Varpa_5897 PF07720 Tetratricopeptide repeat Varpa_5898 PF01967 MoaC family Varpa_5900 PF05567 Neisseria PilC beta-propeller domain Varpa_5906 PF13276 HTH-like domain Varpa_5906 PF00665 Integrase core domain Varpa_5906 PF13333 Integrase core domain Varpa_5908 PF07963 Prokaryotic N-terminal methylation motif Varpa_5908 PF00114 Pilin (bacterial filament) Varpa_5909 PF12706 Beta-lactamase superfamily domain Varpa_5910 PF00211 Adenylate and Guanylate cyclase catalytic domain Varpa_5911 PF00498 FHA domain Varpa_5913 PF03741 Integral membrane protein TerC family Varpa_5914 PF02629 CoA binding domain Varpa_5914 PF00549 CoA-ligase Varpa_5915 PF08442 ATP-grasp domain Varpa_5915 PF00549 CoA-ligase Varpa_5916 PF01118 Semialdehyde dehydrogenase, NAD binding domain Varpa_5918 PF05360 yiaA/B two helix domain Varpa_5920 PF02631 RecX family Varpa_5921 PF00154 recA bacterial DNA recombination protein Varpa_5923 PF00486 Transcriptional regulatory protein, C terminal Varpa_5923 PF00072 Response regulator receiver domain Varpa_5925 PF08521 Two-component sensor kinase N-terminal Varpa_5925 PF00512 His Kinase A (phospho-acceptor) domain Varpa_5925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Varpa_5928 PF02237 Biotin protein ligase C terminal domain Varpa_5928 PF03099 Biotin/lipoate A/B protein ligase family Varpa_5928 PF08279 HTH domain Varpa_5930 PF01751 Toprim domain Varpa_5930 PF01131 DNA topoisomerase Varpa_5932 PF07722 Peptidase C26 Varpa_5935 PF00392 Bacterial regulatory proteins, gntR family Varpa_5935 PF00155 Aminotransferase class I and II Varpa_5936 PF07690 Major Facilitator Superfamily Varpa_5938 PF01176 Translation initiation factor 1A / IF-1 Varpa_5939 PF00271 Helicase conserved C-terminal domain Varpa_5939 PF00270 DEAD/DEAH box helicase Varpa_5939 PF03880 DbpA RNA binding domain Varpa_5940 PF01554 MatE Varpa_5943 PF00892 EamA-like transporter family Varpa_5945 PF07729 FCD domain Varpa_5945 PF00392 Bacterial regulatory proteins, gntR family Varpa_5946 PF07992 Pyridine nucleotide-disulphide oxidoreductase Varpa_5946 PF17806 Sarcosine oxidase A3 domain Varpa_5948 PF01266 FAD dependent oxidoreductase Varpa_5949 PF05544 Proline racemase Varpa_5950 PF13458 Periplasmic binding protein Varpa_5951 PF00701 Dihydrodipicolinate synthetase family Varpa_5952 PF07804 HipA-like C-terminal domain Varpa_5952 PF13657 HipA N-terminal domain Varpa_5955 PF07687 Peptidase dimerisation domain Varpa_5955 PF01546 Peptidase family M20/M25/M40 Varpa_5956 PF02678 Pirin Varpa_5956 PF05726 Pirin C-terminal cupin domain Varpa_5958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5958 PF03466 LysR substrate binding domain Varpa_5959 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Varpa_5962 PF02678 Pirin Varpa_5962 PF05726 Pirin C-terminal cupin domain Varpa_5964 PF03401 Tripartite tricarboxylate transporter family receptor Varpa_5965 PF00180 Isocitrate/isopropylmalate dehydrogenase Varpa_5966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Varpa_5966 PF03466 LysR substrate binding domain Varpa_5967 PF16485 Protealysin propeptide Varpa_5967 PF01447 Thermolysin metallopeptidase, catalytic domain Varpa_5967 PF02868 Thermolysin metallopeptidase, alpha-helical domain Varpa_5969 PF01566 Natural resistance-associated macrophage protein Varpa_5970 PF03992 Antibiotic biosynthesis monooxygenase Varpa_5973 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Varpa_5973 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Varpa_5974 PF00456 Transketolase, thiamine diphosphate binding domain Varpa_5974 PF02780 Transketolase, C-terminal domain Varpa_5974 PF02779 Transketolase, pyrimidine binding domain Varpa_5975 PF02675 S-adenosylmethionine decarboxylase Varpa_5976 PF00483 Nucleotidyl transferase Varpa_5977 PF00557 Metallopeptidase family M24 Varpa_5977 PF05195 Aminopeptidase P, N-terminal domain Varpa_5981 PF00912 Transglycosylase Varpa_5981 PF06832 Penicillin-Binding Protein C-terminus Family Varpa_5981 PF00905 Penicillin binding protein transpeptidase domain Varpa_5982 PF01835 MG2 domain Varpa_5982 PF07703 Alpha-2-macroglobulin bait region domain Varpa_5982 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Varpa_5982 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Varpa_5982 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Varpa_5982 PF00207 Alpha-2-macroglobulin family Varpa_5982 PF17962 Bacterial macroglobulin domain 6 Varpa_5991 PF00390 Malic enzyme, N-terminal domain Varpa_5991 PF03949 Malic enzyme, NAD binding domain Varpa_5991 PF01515 Phosphate acetyl/butaryl transferase Varpa_5992 PF00545 ribonuclease Varpa_5994 PF00398 Ribosomal RNA adenine dimethylase Varpa_5995 PF00639 PPIC-type PPIASE domain Varpa_5995 PF09312 SurA N-terminal domain Varpa_5996 PF04453 LPS transport system D Varpa_5997 PF01636 Phosphotransferase enzyme family Varpa_5998 PF04452 RNA methyltransferase Varpa_6001 PF07690 Major Facilitator Superfamily Varpa_6002 PF12146 Serine aminopeptidase, S33 Varpa_6006 PF00027 Cyclic nucleotide-binding domain Varpa_6006 PF00520 Ion transport protein Varpa_6007 PF01205 Uncharacterized protein family UPF0029 Varpa_6007 PF09186 Domain of unknown function (DUF1949) Varpa_6008 PF07021 Methionine biosynthesis protein MetW Varpa_6008 PF00561 alpha/beta hydrolase fold Varpa_6009 PF00561 alpha/beta hydrolase fold Varpa_6010 PF01169 Uncharacterized protein family UPF0016 Varpa_6011 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Varpa_6012 PF00106 short chain dehydrogenase Varpa_6015 PF00571 CBS domain Varpa_6015 PF01380 SIS domain Varpa_6016 PF00999 Sodium/hydrogen exchanger family Varpa_6016 PF02080 TrkA-C domain Varpa_6016 PF02254 TrkA-N domain Varpa_6018 PF04960 Glutaminase Varpa_6018 PF01740 STAS domain Varpa_6018 PF00027 Cyclic nucleotide-binding domain Varpa_6019 PF10396 GTP-binding protein TrmE N-terminus Varpa_6019 PF12631 MnmE helical domain Varpa_6019 PF01926 50S ribosome-binding GTPase Varpa_6020 PF14849 YidC periplasmic domain Varpa_6020 PF02096 60Kd inner membrane protein Varpa_6021 PF01809 Putative membrane protein insertion efficiency factor Varpa_6022 PF00825 Ribonuclease P Varpa_6023 PF00468 Ribosomal protein L34