locus-tag class description INQ48_00005 PF00308 Bacterial dnaA protein INQ48_00005 PF11638 DnaA N-terminal domain INQ48_00005 PF08299 Bacterial dnaA protein helix-turn-helix INQ48_00010 PF02767 DNA polymerase III beta subunit, central domain INQ48_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain INQ48_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain INQ48_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_00015 PF18053 DNA gyrase B subunit insert domain INQ48_00015 PF00986 DNA gyrase B subunit, carboxyl terminus INQ48_00015 PF00204 DNA gyrase B INQ48_00015 PF01751 Toprim domain INQ48_00030 PF00149 Calcineurin-like phosphoesterase INQ48_00040 PF09411 Lipid A 3-O-deacylase (PagL) INQ48_00045 PF03706 Lysylphosphatidylglycerol synthase TM region INQ48_00050 PF13091 PLD-like domain INQ48_00055 PF03372 Endonuclease/Exonuclease/phosphatase family INQ48_00075 PF02678 Pirin INQ48_00075 PF05726 Pirin C-terminal cupin domain INQ48_00085 PF03055 Retinal pigment epithelial membrane protein INQ48_00095 PF00583 Acetyltransferase (GNAT) family INQ48_00100 PF00912 Transglycosylase INQ48_00120 PF06123 Inner membrane protein CreD INQ48_00125 PF00933 Glycosyl hydrolase family 3 N terminal domain INQ48_00130 PF17092 Penicillin-binding protein OB-like domain INQ48_00130 PF00912 Transglycosylase INQ48_00130 PF00905 Penicillin binding protein transpeptidase domain INQ48_00140 PF00672 HAMP domain INQ48_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_00140 PF00512 His Kinase A (phospho-acceptor) domain INQ48_00145 PF00072 Response regulator receiver domain INQ48_00145 PF00486 Transcriptional regulatory protein, C terminal INQ48_00155 PF00376 MerR family regulatory protein INQ48_00155 PF09278 MerR, DNA binding INQ48_00160 PF00403 Heavy-metal-associated domain INQ48_00165 PF00403 Heavy-metal-associated domain INQ48_00170 PF00583 Acetyltransferase (GNAT) family INQ48_00170 PF13508 Acetyltransferase (GNAT) domain INQ48_00175 PF04116 Fatty acid hydroxylase superfamily INQ48_00180 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_00180 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_00185 PF00550 Phosphopantetheine attachment site INQ48_00195 PF00486 Transcriptional regulatory protein, C terminal INQ48_00195 PF00072 Response regulator receiver domain INQ48_00200 PF00512 His Kinase A (phospho-acceptor) domain INQ48_00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_00215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_00220 PF00043 Glutathione S-transferase, C-terminal domain INQ48_00220 PF02798 Glutathione S-transferase, N-terminal domain INQ48_00240 PF13932 GidA associated domain INQ48_00240 PF01134 Glucose inhibited division protein A INQ48_00245 PF02527 rRNA small subunit methyltransferase G INQ48_00250 PF01810 LysE type translocator INQ48_00255 PF13614 AAA domain INQ48_00265 PF02195 ParB-like nuclease domain INQ48_00265 PF17762 HTH domain found in ParB protein INQ48_00275 PF01565 FAD binding domain INQ48_00275 PF02913 FAD linked oxidases, C-terminal domain INQ48_00280 PF01923 Cobalamin adenosyltransferase INQ48_00295 PF13472 GDSL-like Lipase/Acylhydrolase family INQ48_00310 PF01638 HxlR-like helix-turn-helix INQ48_00330 PF03466 LysR substrate binding domain INQ48_00330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00350 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_00360 PF03776 Septum formation topological specificity factor MinE INQ48_00365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain INQ48_00370 PF03775 Septum formation inhibitor MinC, C-terminal domain INQ48_00370 PF05209 Septum formation inhibitor MinC, N-terminal domain INQ48_00375 PF00860 Permease family INQ48_00380 PF03061 Thioesterase superfamily INQ48_00400 PF00368 Hydroxymethylglutaryl-coenzyme A reductase INQ48_00405 PF00155 Aminotransferase class I and II INQ48_00405 PF00392 Bacterial regulatory proteins, gntR family INQ48_00410 PF00378 Enoyl-CoA hydratase/isomerase INQ48_00420 PF13193 AMP-binding enzyme C-terminal domain INQ48_00420 PF00501 AMP-binding enzyme INQ48_00425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_00425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_00435 PF05853 beta-keto acid cleavage enzyme INQ48_00445 PF06476 Protein of unknown function (DUF1090) INQ48_00450 PF13545 Crp-like helix-turn-helix domain INQ48_00450 PF00027 Cyclic nucleotide-binding domain INQ48_00455 PF00743 Flavin-binding monooxygenase-like INQ48_00465 PF12852 Cupin INQ48_00465 PF12833 Helix-turn-helix domain INQ48_00470 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_00485 PF00158 Sigma-54 interaction domain INQ48_00485 PF01590 GAF domain INQ48_00485 PF02954 Bacterial regulatory protein, Fis family INQ48_00495 PF00005 ABC transporter INQ48_00500 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_00500 PF00005 ABC transporter INQ48_00510 PF02653 Branched-chain amino acid transport system / permease component INQ48_00520 PF00561 alpha/beta hydrolase fold INQ48_00525 PF13193 AMP-binding enzyme C-terminal domain INQ48_00525 PF00501 AMP-binding enzyme INQ48_00530 PF00171 Aldehyde dehydrogenase family INQ48_00540 PF01202 Shikimate kinase INQ48_00545 PF00378 Enoyl-CoA hydratase/isomerase INQ48_00555 PF00037 4Fe-4S binding domain INQ48_00555 PF00970 Oxidoreductase FAD-binding domain INQ48_00555 PF00175 Oxidoreductase NAD-binding domain INQ48_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_00590 PF04199 Putative cyclase INQ48_00595 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_00600 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_00605 PF00005 ABC transporter INQ48_00620 PF13193 AMP-binding enzyme C-terminal domain INQ48_00620 PF00501 AMP-binding enzyme INQ48_00630 PF00211 Adenylate and Guanylate cyclase catalytic domain INQ48_00630 PF02743 Cache domain INQ48_00630 PF00672 HAMP domain INQ48_00635 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA INQ48_00655 PF03466 LysR substrate binding domain INQ48_00655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_00660 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_00660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_00665 PF02515 CoA-transferase family III INQ48_00670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00680 PF03466 LysR substrate binding domain INQ48_00690 PF01546 Peptidase family M20/M25/M40 INQ48_00690 PF07687 Peptidase dimerisation domain INQ48_00695 PF03313 Serine dehydratase alpha chain INQ48_00695 PF03315 Serine dehydratase beta chain INQ48_00700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_00705 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00710 PF03466 LysR substrate binding domain INQ48_00720 PF03167 Uracil DNA glycosylase superfamily INQ48_00725 PF01042 Endoribonuclease L-PSP INQ48_00740 PF03466 LysR substrate binding domain INQ48_00740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00755 PF00092 von Willebrand factor type A domain INQ48_00760 PF07728 AAA domain (dynein-related subfamily) INQ48_00760 PF08406 CbbQ/NirQ/NorQ C-terminal INQ48_00765 PF00795 Carbon-nitrogen hydrolase INQ48_00770 PF00005 ABC transporter INQ48_00775 PF00005 ABC transporter INQ48_00780 PF02653 Branched-chain amino acid transport system / permease component INQ48_00785 PF02653 Branched-chain amino acid transport system / permease component INQ48_00790 PF13458 Periplasmic binding protein INQ48_00815 PF04960 Glutaminase INQ48_00825 PF00893 Small Multidrug Resistance protein INQ48_00835 PF01613 Flavin reductase like domain INQ48_00840 PF03466 LysR substrate binding domain INQ48_00840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00845 PF14864 Alkyl sulfatase C-terminal INQ48_00845 PF00753 Metallo-beta-lactamase superfamily INQ48_00845 PF14863 Alkyl sulfatase dimerisation INQ48_00855 PF12833 Helix-turn-helix domain INQ48_00855 PF12852 Cupin INQ48_00865 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_00870 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_00870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_00875 PF02515 CoA-transferase family III INQ48_00885 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain INQ48_00885 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain INQ48_00890 PF02515 CoA-transferase family III INQ48_00895 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_00905 PF07670 Nucleoside recognition INQ48_00910 PF13091 PLD-like domain INQ48_00915 PF08448 PAS fold INQ48_00915 PF05231 MASE1 INQ48_00915 PF08447 PAS fold INQ48_00915 PF00563 EAL domain INQ48_00915 PF00990 Diguanylate cyclase, GGDEF domain INQ48_00915 PF13426 PAS domain INQ48_00920 PF00440 Bacterial regulatory proteins, tetR family INQ48_00925 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV INQ48_00940 PF03466 LysR substrate binding domain INQ48_00940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_00950 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain INQ48_00950 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain INQ48_00960 PF13291 ACT domain INQ48_00960 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_00965 PF01434 Peptidase family M41 INQ48_00965 PF17862 AAA+ lid domain INQ48_00965 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_00975 PF01156 Inosine-uridine preferring nucleoside hydrolase INQ48_00980 PF00570 HRDC domain INQ48_00980 PF16124 RecQ zinc-binding INQ48_00980 PF09382 RQC domain INQ48_00980 PF00271 Helicase conserved C-terminal domain INQ48_00980 PF00270 DEAD/DEAH box helicase INQ48_00990 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_00995 PF00005 ABC transporter INQ48_01000 PF00392 Bacterial regulatory proteins, gntR family INQ48_01000 PF07702 UTRA domain INQ48_01005 PF00221 Aromatic amino acid lyase INQ48_01010 PF17392 Urocanase C-terminal domain INQ48_01010 PF17391 Urocanase N-terminal domain INQ48_01010 PF01175 Urocanase Rossmann-like domain INQ48_01015 PF05962 HutD INQ48_01020 PF01979 Amidohydrolase family INQ48_01035 PF02913 FAD linked oxidases, C-terminal domain INQ48_01035 PF01565 FAD binding domain INQ48_01040 PF00155 Aminotransferase class I and II INQ48_01050 PF02607 B12 binding domain INQ48_01050 PF02574 Homocysteine S-methyltransferase INQ48_01050 PF02310 B12 binding domain INQ48_01050 PF02965 Vitamin B12 dependent methionine synthase, activation domain INQ48_01050 PF00809 Pterin binding enzyme INQ48_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01055 PF03466 LysR substrate binding domain INQ48_01065 PF02574 Homocysteine S-methyltransferase INQ48_01065 PF00809 Pterin binding enzyme INQ48_01065 PF02965 Vitamin B12 dependent methionine synthase, activation domain INQ48_01065 PF02607 B12 binding domain INQ48_01065 PF02310 B12 binding domain INQ48_01085 PF01979 Amidohydrolase family INQ48_01090 PF17938 Tetracyclin repressor-like, C-terminal domain INQ48_01090 PF00440 Bacterial regulatory proteins, tetR family INQ48_01095 PF00175 Oxidoreductase NAD-binding domain INQ48_01095 PF00970 Oxidoreductase FAD-binding domain INQ48_01100 PF00037 4Fe-4S binding domain INQ48_01120 PF13458 Periplasmic binding protein INQ48_01130 PF00005 ABC transporter INQ48_01130 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_01135 PF00005 ABC transporter INQ48_01140 PF00857 Isochorismatase family INQ48_01150 PF01799 [2Fe-2S] binding domain INQ48_01150 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_01155 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_01155 PF00034 Cytochrome c INQ48_01155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_01170 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 INQ48_01175 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath INQ48_01190 PF04965 Gene 25-like lysozyme INQ48_01195 PF05947 Type VI secretion system, TssF INQ48_01205 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_01205 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_01205 PF17871 AAA lid domain INQ48_01205 PF07724 AAA domain (Cdc48 subfamily) INQ48_01210 PF04717 Type VI secretion system, phage-baseplate injector INQ48_01210 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_01260 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE INQ48_01265 PF00691 OmpA family INQ48_01265 PF13677 Membrane MotB of proton-channel complex MotA/MotB INQ48_01270 PF06761 Intracellular multiplication and human macrophage-killing INQ48_01270 PF06744 Type VI secretion protein IcmF C-terminal INQ48_01270 PF14331 ImcF-related N-terminal domain INQ48_01280 PF13360 PQQ-like domain INQ48_01280 PF00069 Protein kinase domain INQ48_01285 PF13335 Magnesium chelatase, subunit ChlI C-terminal INQ48_01285 PF01078 Magnesium chelatase, subunit ChlI INQ48_01295 PF00543 Nitrogen regulatory protein P-II INQ48_01300 PF00909 Ammonium Transporter Family INQ48_01305 PF08450 SMP-30/Gluconolactonase/LRE-like region INQ48_01310 PF03466 LysR substrate binding domain INQ48_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01315 PF02913 FAD linked oxidases, C-terminal domain INQ48_01315 PF01565 FAD binding domain INQ48_01320 PF01565 FAD binding domain INQ48_01330 PF13183 4Fe-4S dicluster domain INQ48_01330 PF02754 Cysteine-rich domain INQ48_01345 PF00255 Glutathione peroxidase INQ48_01355 PF07690 Major Facilitator Superfamily INQ48_01360 PF01168 Alanine racemase, N-terminal domain INQ48_01360 PF00842 Alanine racemase, C-terminal domain INQ48_01370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01370 PF03466 LysR substrate binding domain INQ48_01375 PF13193 AMP-binding enzyme C-terminal domain INQ48_01375 PF00501 AMP-binding enzyme INQ48_01380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_01380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_01380 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_01385 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01390 PF03466 LysR substrate binding domain INQ48_01405 PF02558 Ketopantoate reductase PanE/ApbA INQ48_01405 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_01410 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_01415 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01420 PF00920 Dehydratase family INQ48_01430 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_01435 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_01455 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01460 PF00171 Aldehyde dehydrogenase family INQ48_01465 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01470 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_01475 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_01480 PF01047 MarR family INQ48_01485 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01490 PF01494 FAD binding domain INQ48_01495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01495 PF03466 LysR substrate binding domain INQ48_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01500 PF03466 LysR substrate binding domain INQ48_01505 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_01510 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_01515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_01520 PF18073 Rubredoxin metal binding domain INQ48_01535 PF03466 LysR substrate binding domain INQ48_01535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01540 PF17763 Glutaminase/Asparaginase C-terminal domain INQ48_01540 PF00710 Asparaginase, N-terminal INQ48_01545 PF07690 Major Facilitator Superfamily INQ48_01550 PF01546 Peptidase family M20/M25/M40 INQ48_01550 PF07687 Peptidase dimerisation domain INQ48_01555 PF04381 Putative exonuclease, RdgC INQ48_01560 PF01063 Amino-transferase class IV INQ48_01575 PF16884 N-terminal domain of oxidoreductase INQ48_01575 PF00107 Zinc-binding dehydrogenase INQ48_01580 PF16925 Tetracyclin repressor-like, C-terminal domain INQ48_01580 PF00440 Bacterial regulatory proteins, tetR family INQ48_01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_01590 PF00672 HAMP domain INQ48_01590 PF00512 His Kinase A (phospho-acceptor) domain INQ48_01595 PF00486 Transcriptional regulatory protein, C terminal INQ48_01595 PF00072 Response regulator receiver domain INQ48_01600 PF01266 FAD dependent oxidoreductase INQ48_01610 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_01610 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_01615 PF07690 Major Facilitator Superfamily INQ48_01620 PF01435 Peptidase family M48 INQ48_01625 PF01425 Amidase INQ48_01635 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_01640 PF00005 ABC transporter INQ48_01650 PF01425 Amidase INQ48_01660 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_01670 PF02653 Branched-chain amino acid transport system / permease component INQ48_01675 PF00795 Carbon-nitrogen hydrolase INQ48_01680 PF00857 Isochorismatase family INQ48_01685 PF00005 ABC transporter INQ48_01690 PF00857 Isochorismatase family INQ48_01695 PF00392 Bacterial regulatory proteins, gntR family INQ48_01695 PF07729 FCD domain INQ48_01700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01705 PF01494 FAD binding domain INQ48_01710 PF03466 LysR substrate binding domain INQ48_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01715 PF03466 LysR substrate binding domain INQ48_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_01720 PF00857 Isochorismatase family INQ48_01730 PF00106 short chain dehydrogenase INQ48_01735 PF01979 Amidohydrolase family INQ48_01740 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) INQ48_01745 PF00005 ABC transporter INQ48_01770 PF03372 Endonuclease/Exonuclease/phosphatase family INQ48_01775 PF00156 Phosphoribosyl transferase domain INQ48_01785 PF02934 GatB/GatE catalytic domain INQ48_01785 PF02637 GatB domain INQ48_01790 PF01425 Amidase INQ48_01795 PF02686 Glu-tRNAGln amidotransferase C subunit INQ48_01820 PF03717 Penicillin-binding Protein dimerisation domain INQ48_01820 PF00905 Penicillin binding protein transpeptidase domain INQ48_01825 PF13407 Periplasmic binding protein domain INQ48_01830 PF02653 Branched-chain amino acid transport system / permease component INQ48_01835 PF00005 ABC transporter INQ48_01840 PF00480 ROK family INQ48_01840 PF01325 Iron dependent repressor, N-terminal DNA binding domain INQ48_01845 PF01011 PQQ enzyme repeat INQ48_01850 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01860 PF00694 Aconitase C-terminal domain INQ48_01865 PF00330 Aconitase family (aconitate hydratase) INQ48_01880 PF13360 PQQ-like domain INQ48_01880 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_01895 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_01900 PF07963 Prokaryotic N-terminal methylation motif INQ48_01900 PF00114 Pilin (bacterial filament) INQ48_01905 PF00171 Aldehyde dehydrogenase family INQ48_01910 PF01965 DJ-1/PfpI family INQ48_01915 PF00285 Citrate synthase, C-terminal domain INQ48_01920 PF00285 Citrate synthase, C-terminal domain INQ48_01930 PF13193 AMP-binding enzyme C-terminal domain INQ48_01930 PF00501 AMP-binding enzyme INQ48_01935 PF00005 ABC transporter INQ48_01955 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_01955 PF00005 ABC transporter INQ48_01960 PF00501 AMP-binding enzyme INQ48_01965 PF13545 Crp-like helix-turn-helix domain INQ48_01965 PF00027 Cyclic nucleotide-binding domain INQ48_01975 PF00072 Response regulator receiver domain INQ48_01975 PF00158 Sigma-54 interaction domain INQ48_01975 PF02954 Bacterial regulatory protein, Fis family INQ48_01980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_01980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_01985 PF07519 Tannase and feruloyl esterase INQ48_01990 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_01990 PF00005 ABC transporter INQ48_01995 PF09383 NIL domain INQ48_01995 PF00005 ABC transporter INQ48_02005 PF02653 Branched-chain amino acid transport system / permease component INQ48_02020 PF00106 short chain dehydrogenase INQ48_02035 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_02040 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_02045 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_02050 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_02055 PF00005 ABC transporter INQ48_02060 PF01546 Peptidase family M20/M25/M40 INQ48_02060 PF07687 Peptidase dimerisation domain INQ48_02075 PF00491 Arginase family INQ48_02080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain INQ48_02080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain INQ48_02090 PF02321 Outer membrane efflux protein INQ48_02095 PF00873 AcrB/AcrD/AcrF family INQ48_02100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_02115 PF00753 Metallo-beta-lactamase superfamily INQ48_02125 PF00034 Cytochrome c INQ48_02130 PF00174 Oxidoreductase molybdopterin binding domain INQ48_02135 PF00034 Cytochrome c INQ48_02160 PF00149 Calcineurin-like phosphoesterase INQ48_02160 PF02872 5'-nucleotidase, C-terminal domain INQ48_02165 PF04143 Sulphur transport INQ48_02190 PF13493 Domain of unknown function (DUF4118) INQ48_02190 PF02702 Osmosensitive K+ channel His kinase sensor domain INQ48_02190 PF00512 His Kinase A (phospho-acceptor) domain INQ48_02190 PF13492 GAF domain INQ48_02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_02195 PF00486 Transcriptional regulatory protein, C terminal INQ48_02195 PF00072 Response regulator receiver domain INQ48_02200 PF00009 Elongation factor Tu GTP binding domain INQ48_02200 PF14492 Elongation Factor G, domain II INQ48_02200 PF00679 Elongation factor G C-terminus INQ48_02200 PF03764 Elongation factor G, domain IV INQ48_02200 PF03144 Elongation factor Tu domain 2 INQ48_02220 PF04101 Glycosyltransferase family 28 C-terminal domain INQ48_02220 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase INQ48_02225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family INQ48_02230 PF01467 Cytidylyltransferase-like INQ48_02230 PF00293 NUDIX domain INQ48_02235 PF01479 S4 domain INQ48_02235 PF00849 RNA pseudouridylate synthase INQ48_02245 PF00486 Transcriptional regulatory protein, C terminal INQ48_02245 PF00072 Response regulator receiver domain INQ48_02250 PF00512 His Kinase A (phospho-acceptor) domain INQ48_02250 PF08521 Two-component sensor kinase N-terminal INQ48_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_02265 PF00230 Major intrinsic protein INQ48_02270 PF08659 KR domain INQ48_02270 PF14765 Polyketide synthase dehydratase INQ48_02270 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_02270 PF00698 Acyl transferase domain INQ48_02270 PF00550 Phosphopantetheine attachment site INQ48_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_02275 PF03466 LysR substrate binding domain INQ48_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_02315 PF00183 Hsp90 protein INQ48_02325 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_02355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain INQ48_02355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain INQ48_02355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain INQ48_02360 PF02515 CoA-transferase family III INQ48_02365 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_02370 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_02370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_02370 PF18158 Adaptive response protein AidB N-terminal domain INQ48_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_02375 PF03466 LysR substrate binding domain INQ48_02390 PF01636 Phosphotransferase enzyme family INQ48_02400 PF02566 OsmC-like protein INQ48_02405 PF01047 MarR family INQ48_02410 PF00144 Beta-lactamase INQ48_02420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_02420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_02425 PF02222 ATP-grasp domain INQ48_02430 PF07859 alpha/beta hydrolase fold INQ48_02440 PF02653 Branched-chain amino acid transport system / permease component INQ48_02450 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_02450 PF00005 ABC transporter INQ48_02455 PF00005 ABC transporter INQ48_02460 PF00501 AMP-binding enzyme INQ48_02475 PF01914 MarC family integral membrane protein INQ48_02485 PF01323 DSBA-like thioredoxin domain INQ48_02490 PF01738 Dienelactone hydrolase family INQ48_02495 PF03466 LysR substrate binding domain INQ48_02495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_02510 PF01544 CorA-like Mg2+ transporter protein INQ48_02515 PF00490 Delta-aminolevulinic acid dehydratase INQ48_02520 PF03653 Uncharacterised protein family (UPF0093) INQ48_02535 PF02129 X-Pro dipeptidyl-peptidase (S15 family) INQ48_02540 PF07943 Penicillin-binding protein 5, C-terminal domain INQ48_02540 PF00768 D-alanyl-D-alanine carboxypeptidase INQ48_02545 PF00164 Ribosomal protein S12/S23 INQ48_02550 PF00177 Ribosomal protein S7p/S5e INQ48_02555 PF14492 Elongation Factor G, domain II INQ48_02555 PF03144 Elongation factor Tu domain 2 INQ48_02555 PF00009 Elongation factor Tu GTP binding domain INQ48_02555 PF03764 Elongation factor G, domain IV INQ48_02555 PF00679 Elongation factor G C-terminus INQ48_02560 PF03143 Elongation factor Tu C-terminal domain INQ48_02560 PF03144 Elongation factor Tu domain 2 INQ48_02560 PF00009 Elongation factor Tu GTP binding domain INQ48_02565 PF00338 Ribosomal protein S10p/S20e INQ48_02580 PF00297 Ribosomal protein L3 INQ48_02585 PF00573 Ribosomal protein L4/L1 family INQ48_02590 PF00276 Ribosomal protein L23 INQ48_02595 PF03947 Ribosomal Proteins L2, C-terminal domain INQ48_02595 PF00181 Ribosomal Proteins L2, RNA binding domain INQ48_02600 PF00203 Ribosomal protein S19 INQ48_02605 PF00237 Ribosomal protein L22p/L17e INQ48_02610 PF00189 Ribosomal protein S3, C-terminal domain INQ48_02610 PF07650 KH domain INQ48_02615 PF00252 Ribosomal protein L16p/L10e INQ48_02620 PF00831 Ribosomal L29 protein INQ48_02625 PF00366 Ribosomal protein S17 INQ48_02630 PF08534 Redoxin INQ48_02645 PF01322 Cytochrome C' INQ48_02650 PF00578 AhpC/TSA family INQ48_02660 PF07690 Major Facilitator Superfamily INQ48_02670 PF00381 PTS HPr component phosphorylation site INQ48_02675 PF02896 PEP-utilising enzyme, TIM barrel domain INQ48_02675 PF00391 PEP-utilising enzyme, mobile domain INQ48_02675 PF05524 PEP-utilising enzyme, N-terminal INQ48_02700 PF00072 Response regulator receiver domain INQ48_02700 PF00486 Transcriptional regulatory protein, C terminal INQ48_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_02705 PF00512 His Kinase A (phospho-acceptor) domain INQ48_02705 PF00672 HAMP domain INQ48_02710 PF00107 Zinc-binding dehydrogenase INQ48_02710 PF16884 N-terminal domain of oxidoreductase INQ48_02715 PF00419 Fimbrial protein INQ48_02720 PF02753 Pili assembly chaperone PapD, C-terminal domain INQ48_02720 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain INQ48_02725 PF00577 Outer membrane usher protein INQ48_02725 PF13954 PapC N-terminal domain INQ48_02725 PF13953 PapC C-terminal domain INQ48_02730 PF00419 Fimbrial protein INQ48_02740 PF03600 Citrate transporter INQ48_02745 PF07690 Major Facilitator Superfamily INQ48_02755 PF00158 Sigma-54 interaction domain INQ48_02755 PF02954 Bacterial regulatory protein, Fis family INQ48_02755 PF00072 Response regulator receiver domain INQ48_02760 PF00512 His Kinase A (phospho-acceptor) domain INQ48_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_02765 PF13193 AMP-binding enzyme C-terminal domain INQ48_02765 PF00501 AMP-binding enzyme INQ48_02770 PF04055 Radical SAM superfamily INQ48_02770 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family INQ48_02775 PF03099 Biotin/lipoate A/B protein ligase family INQ48_02780 PF12706 Beta-lactamase superfamily domain INQ48_02785 PF04359 Protein of unknown function (DUF493) INQ48_02790 PF01063 Amino-transferase class IV INQ48_02800 PF00119 ATP synthase A chain INQ48_02805 PF00137 ATP synthase subunit C INQ48_02810 PF00430 ATP synthase B/B' CF(0) INQ48_02815 PF00213 ATP synthase delta (OSCP) subunit INQ48_02820 PF02874 ATP synthase alpha/beta family, beta-barrel domain INQ48_02820 PF00306 ATP synthase alpha/beta chain, C terminal domain INQ48_02820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INQ48_02825 PF00231 ATP synthase INQ48_02835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INQ48_02835 PF02874 ATP synthase alpha/beta family, beta-barrel domain INQ48_02840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain INQ48_02840 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain INQ48_02845 PF00480 ROK family INQ48_02845 PF01047 MarR family INQ48_02850 PF00005 ABC transporter INQ48_02855 PF02653 Branched-chain amino acid transport system / permease component INQ48_02860 PF13407 Periplasmic binding protein domain INQ48_02865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INQ48_02865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INQ48_02880 PF04675 DNA ligase N terminus INQ48_02880 PF01068 ATP dependent DNA ligase domain INQ48_02880 PF04679 ATP dependent DNA ligase C terminal region INQ48_02885 PF01068 ATP dependent DNA ligase domain INQ48_02885 PF04675 DNA ligase N terminus INQ48_02885 PF04679 ATP dependent DNA ligase C terminal region INQ48_02890 PF00270 DEAD/DEAH box helicase INQ48_02890 PF00271 Helicase conserved C-terminal domain INQ48_02890 PF08494 DEAD/H associated INQ48_02895 PF00085 Thioredoxin INQ48_02930 PF02653 Branched-chain amino acid transport system / permease component INQ48_02940 PF00005 ABC transporter INQ48_02945 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_02955 PF14226 non-haem dioxygenase in morphine synthesis N-terminal INQ48_02955 PF03171 2OG-Fe(II) oxygenase superfamily INQ48_02960 PF00440 Bacterial regulatory proteins, tetR family INQ48_02960 PF08362 YcdC-like protein, C-terminal region INQ48_02965 PF01613 Flavin reductase like domain INQ48_02970 PF00881 Nitroreductase family INQ48_02975 PF00561 alpha/beta hydrolase fold INQ48_02980 PF01042 Endoribonuclease L-PSP INQ48_02985 PF00857 Isochorismatase family INQ48_02990 PF00296 Luciferase-like monooxygenase INQ48_03015 PF02321 Outer membrane efflux protein INQ48_03020 PF00873 AcrB/AcrD/AcrF family INQ48_03025 PF00529 HlyD membrane-fusion protein of T1SS INQ48_03025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_03030 PF08361 MAATS-type transcriptional repressor, C-terminal region INQ48_03030 PF00440 Bacterial regulatory proteins, tetR family INQ48_03040 PF00672 HAMP domain INQ48_03040 PF00512 His Kinase A (phospho-acceptor) domain INQ48_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_03045 PF00486 Transcriptional regulatory protein, C terminal INQ48_03045 PF00072 Response regulator receiver domain INQ48_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03070 PF03466 LysR substrate binding domain INQ48_03075 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family INQ48_03085 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_03085 PF17831 Pyruvate dehydrogenase E1 component middle domain INQ48_03090 PF02780 Transketolase, C-terminal domain INQ48_03090 PF02779 Transketolase, pyrimidine binding domain INQ48_03090 PF13292 1-deoxy-D-xylulose-5-phosphate synthase INQ48_03095 PF07730 Histidine kinase INQ48_03100 PF00005 ABC transporter INQ48_03105 PF02361 Cobalt transport protein INQ48_03135 PF00296 Luciferase-like monooxygenase INQ48_03150 PF00072 Response regulator receiver domain INQ48_03150 PF00486 Transcriptional regulatory protein, C terminal INQ48_03155 PF01262 Alanine dehydrogenase/PNT, C-terminal domain INQ48_03155 PF05222 Alanine dehydrogenase/PNT, N-terminal domain INQ48_03160 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch INQ48_03165 PF02233 NAD(P) transhydrogenase beta subunit INQ48_03170 PF13193 AMP-binding enzyme C-terminal domain INQ48_03170 PF00501 AMP-binding enzyme INQ48_03175 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_03180 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_03180 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_03185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_03185 PF00005 ABC transporter INQ48_03190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_03190 PF00005 ABC transporter INQ48_03195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_03200 PF01048 Phosphorylase superfamily INQ48_03205 PF01544 CorA-like Mg2+ transporter protein INQ48_03210 PF00580 UvrD/REP helicase N-terminal domain INQ48_03210 PF13361 UvrD-like helicase C-terminal domain INQ48_03215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein INQ48_03220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 INQ48_03225 PF02603 HPr Serine kinase N terminus INQ48_03225 PF07475 HPr Serine kinase C-terminal domain INQ48_03230 PF01475 Ferric uptake regulator family INQ48_03235 PF04355 SmpA / OmlA family INQ48_03240 PF01113 Dihydrodipicolinate reductase, N-terminus INQ48_03240 PF05173 Dihydrodipicolinate reductase, C-terminus INQ48_03245 PF01618 MotA/TolQ/ExbB proton channel family INQ48_03250 PF02472 Biopolymer transport protein ExbD/TolR INQ48_03255 PF00343 Carbohydrate phosphorylase INQ48_03260 PF08323 Starch synthase catalytic domain INQ48_03260 PF00534 Glycosyl transferases group 1 INQ48_03265 PF00483 Nucleotidyl transferase INQ48_03270 PF18390 Glycogen debranching enzyme C-terminal domain INQ48_03270 PF00128 Alpha amylase, catalytic domain INQ48_03270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_03275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_03275 PF00128 Alpha amylase, catalytic domain INQ48_03275 PF02806 Alpha amylase, C-terminal all-beta domain INQ48_03280 PF00128 Alpha amylase, catalytic domain INQ48_03285 PF13454 FAD-NAD(P)-binding INQ48_03290 PF08264 Anticodon-binding domain of tRNA INQ48_03290 PF00133 tRNA synthetases class I (I, L, M and V) INQ48_03290 PF13603 Leucyl-tRNA synthetase, Domain 2 INQ48_03290 PF09334 tRNA synthetases class I (M) INQ48_03305 PF00171 Aldehyde dehydrogenase family INQ48_03315 PF02705 K+ potassium transporter INQ48_03325 PF03594 Benzoate membrane transport protein INQ48_03330 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain INQ48_03330 PF02951 Prokaryotic glutathione synthetase, N-terminal domain INQ48_03335 PF07715 TonB-dependent Receptor Plug Domain INQ48_03335 PF00593 TonB dependent receptor INQ48_03340 PF13230 Glutamine amidotransferases class-II INQ48_03350 PF07690 Major Facilitator Superfamily INQ48_03355 PF10005 zinc-ribbon domain INQ48_03355 PF15887 Putative zinc-binding metallo-peptidase INQ48_03365 PF00365 Phosphofructokinase INQ48_03370 PF00378 Enoyl-CoA hydratase/isomerase INQ48_03380 PF03466 LysR substrate binding domain INQ48_03380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03385 PF02469 Fasciclin domain INQ48_03405 PF01274 Malate synthase INQ48_03410 PF00155 Aminotransferase class I and II INQ48_03415 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_03420 PF01614 Bacterial transcriptional regulator INQ48_03420 PF09339 IclR helix-turn-helix domain INQ48_03425 PF00682 HMGL-like INQ48_03430 PF02515 CoA-transferase family III INQ48_03435 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_03440 PF03466 LysR substrate binding domain INQ48_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03460 PF05746 DALR anticodon binding domain INQ48_03460 PF03485 Arginyl tRNA synthetase N terminal domain INQ48_03460 PF00750 tRNA synthetases class I (R) INQ48_03470 PF00085 Thioredoxin INQ48_03470 PF01323 DSBA-like thioredoxin domain INQ48_03475 PF03968 OstA-like protein INQ48_03480 PF00005 ABC transporter INQ48_03485 PF00309 Sigma-54 factor, Activator interacting domain (AID) INQ48_03485 PF04552 Sigma-54, DNA binding domain INQ48_03485 PF04963 Sigma-54 factor, core binding domain INQ48_03490 PF13091 PLD-like domain INQ48_03495 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03500 PF03466 LysR substrate binding domain INQ48_03510 PF00465 Iron-containing alcohol dehydrogenase INQ48_03515 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_03520 PF01070 FMN-dependent dehydrogenase INQ48_03525 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_03555 PF09308 LuxQ, periplasmic INQ48_03555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_03555 PF00512 His Kinase A (phospho-acceptor) domain INQ48_03555 PF00072 Response regulator receiver domain INQ48_03560 PF01170 Putative RNA methylase family UPF0020 INQ48_03560 PF02926 THUMP domain INQ48_03575 PF01645 Conserved region in glutamate synthase INQ48_03580 PF02810 SEC-C motif INQ48_03580 PF03695 Uncharacterised protein family (UPF0149) INQ48_03600 PF03466 LysR substrate binding domain INQ48_03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03610 PF02464 Competence-damaged protein INQ48_03615 PF04608 Phosphatidylglycerophosphatase A INQ48_03625 PF01494 FAD binding domain INQ48_03630 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_03635 PF03466 LysR substrate binding domain INQ48_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03640 PF00586 AIR synthase related protein, N-terminal domain INQ48_03640 PF02769 AIR synthase related protein, C-terminal domain INQ48_03655 PF04107 Glutamate-cysteine ligase family 2(GCS2) INQ48_03670 PF04379 ApaG domain INQ48_03685 PF00834 Ribulose-phosphate 3 epimerase family INQ48_03700 PF04679 ATP dependent DNA ligase C terminal region INQ48_03700 PF01068 ATP dependent DNA ligase domain INQ48_03700 PF13298 DNA polymerase Ligase (LigD) INQ48_03720 PF01070 FMN-dependent dehydrogenase INQ48_03725 PF02653 Branched-chain amino acid transport system / permease component INQ48_03735 PF00005 ABC transporter INQ48_03735 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_03740 PF00005 ABC transporter INQ48_03745 PF13378 Enolase C-terminal domain-like INQ48_03745 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain INQ48_03750 PF03466 LysR substrate binding domain INQ48_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03765 PF18011 C-terminal domain found in long catalases INQ48_03765 PF06628 Catalase-related immune-responsive INQ48_03765 PF00199 Catalase INQ48_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_03770 PF03466 LysR substrate binding domain INQ48_03775 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_03780 PF04909 Amidohydrolase INQ48_03795 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_03800 PF13609 Gram-negative porin INQ48_03810 PF08479 POTRA domain, ShlB-type INQ48_03810 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB INQ48_03825 PF00535 Glycosyl transferase family 2 INQ48_03825 PF02709 N-terminal domain of galactosyltransferase INQ48_03835 PF00672 HAMP domain INQ48_03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_03835 PF00512 His Kinase A (phospho-acceptor) domain INQ48_03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_03845 PF00672 HAMP domain INQ48_03845 PF01627 Hpt domain INQ48_03845 PF00072 Response regulator receiver domain INQ48_03845 PF00512 His Kinase A (phospho-acceptor) domain INQ48_03860 PF13296 Putative type VI secretion system Rhs element Vgr INQ48_03860 PF04717 Type VI secretion system, phage-baseplate injector INQ48_03860 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) INQ48_03865 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE INQ48_03870 PF13677 Membrane MotB of proton-channel complex MotA/MotB INQ48_03870 PF00691 OmpA family INQ48_03875 PF06761 Intracellular multiplication and human macrophage-killing INQ48_03875 PF14331 ImcF-related N-terminal domain INQ48_03875 PF06744 Type VI secretion protein IcmF C-terminal INQ48_03885 PF00069 Protein kinase domain INQ48_03915 PF07024 ImpE protein INQ48_03920 PF04965 Gene 25-like lysozyme INQ48_03925 PF05947 Type VI secretion system, TssF INQ48_03935 PF17871 AAA lid domain INQ48_03935 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_03935 PF07724 AAA domain (Cdc48 subfamily) INQ48_03935 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_03940 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_03940 PF04717 Type VI secretion system, phage-baseplate injector INQ48_03980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath INQ48_03985 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 INQ48_03990 PF06812 ImpA, N-terminal, type VI secretion system INQ48_04010 PF00196 Bacterial regulatory proteins, luxR family INQ48_04010 PF00072 Response regulator receiver domain INQ48_04020 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_04020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_04020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_04025 PF08608 Wyosine base formation INQ48_04025 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain INQ48_04040 PF01039 Carboxyl transferase domain INQ48_04045 PF02785 Biotin carboxylase C-terminal domain INQ48_04045 PF00289 Biotin carboxylase, N-terminal domain INQ48_04045 PF00364 Biotin-requiring enzyme INQ48_04045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_04050 PF00378 Enoyl-CoA hydratase/isomerase INQ48_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_04055 PF03466 LysR substrate binding domain INQ48_04060 PF02423 Ornithine cyclodeaminase/mu-crystallin family INQ48_04065 PF13419 Haloacid dehalogenase-like hydrolase INQ48_04075 PF00425 chorismate binding enzyme INQ48_04075 PF04715 Anthranilate synthase component I, N terminal region INQ48_04085 PF00117 Glutamine amidotransferase class-I INQ48_04090 PF01212 Beta-eliminating lyase INQ48_04095 PF01810 LysE type translocator INQ48_04100 PF00591 Glycosyl transferase family, a/b domain INQ48_04100 PF02885 Glycosyl transferase family, helical bundle domain INQ48_04105 PF00218 Indole-3-glycerol phosphate synthase INQ48_04110 PF03167 Uracil DNA glycosylase superfamily INQ48_04130 PF03144 Elongation factor Tu domain 2 INQ48_04130 PF03143 Elongation factor Tu C-terminal domain INQ48_04130 PF00009 Elongation factor Tu GTP binding domain INQ48_04145 PF00467 KOW motif INQ48_04145 PF02357 Transcription termination factor nusG INQ48_04150 PF00298 Ribosomal protein L11, RNA binding domain INQ48_04150 PF03946 Ribosomal protein L11, N-terminal domain INQ48_04155 PF00687 Ribosomal protein L1p/L10e family INQ48_04160 PF00466 Ribosomal protein L10 INQ48_04165 PF16320 Ribosomal protein L7/L12 dimerisation domain INQ48_04165 PF00542 Ribosomal protein L7/L12 C-terminal domain INQ48_04170 PF04560 RNA polymerase Rpb2, domain 7 INQ48_04170 PF00562 RNA polymerase Rpb2, domain 6 INQ48_04170 PF04565 RNA polymerase Rpb2, domain 3 INQ48_04170 PF10385 RNA polymerase beta subunit external 1 domain INQ48_04170 PF04563 RNA polymerase beta subunit INQ48_04170 PF04561 RNA polymerase Rpb2, domain 2 INQ48_04175 PF04998 RNA polymerase Rpb1, domain 5 INQ48_04175 PF00623 RNA polymerase Rpb1, domain 2 INQ48_04175 PF04983 RNA polymerase Rpb1, domain 3 INQ48_04175 PF05000 RNA polymerase Rpb1, domain 4 INQ48_04175 PF04997 RNA polymerase Rpb1, domain 1 INQ48_04185 PF01189 16S rRNA methyltransferase RsmB/F INQ48_04185 PF01029 NusB family INQ48_04195 PF00989 PAS fold INQ48_04195 PF00512 His Kinase A (phospho-acceptor) domain INQ48_04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_04195 PF00672 HAMP domain INQ48_04200 PF00158 Sigma-54 interaction domain INQ48_04200 PF00072 Response regulator receiver domain INQ48_04200 PF02954 Bacterial regulatory protein, Fis family INQ48_04225 PF00561 alpha/beta hydrolase fold INQ48_04230 PF01047 MarR family INQ48_04250 PF02446 4-alpha-glucanotransferase INQ48_04255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_04255 PF11941 Domain of unknown function (DUF3459) INQ48_04255 PF00128 Alpha amylase, catalytic domain INQ48_04260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_04260 PF00128 Alpha amylase, catalytic domain INQ48_04270 PF00128 Alpha amylase, catalytic domain INQ48_04270 PF16657 Maltogenic Amylase, C-terminal domain INQ48_04275 PF00128 Alpha amylase, catalytic domain INQ48_04275 PF11896 Domain of unknown function (DUF3416) INQ48_04280 PF00128 Alpha amylase, catalytic domain INQ48_04280 PF02806 Alpha amylase, C-terminal all-beta domain INQ48_04280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_04285 PF00072 Response regulator receiver domain INQ48_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_04285 PF00512 His Kinase A (phospho-acceptor) domain INQ48_04285 PF01627 Hpt domain INQ48_04285 PF00989 PAS fold INQ48_04285 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_04290 PF00072 Response regulator receiver domain INQ48_04290 PF00196 Bacterial regulatory proteins, luxR family INQ48_04295 PF01925 Sulfite exporter TauE/SafE INQ48_04300 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term INQ48_04300 PF12833 Helix-turn-helix domain INQ48_04325 PF12833 Helix-turn-helix domain INQ48_04330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_04330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_04335 PF02447 GntP family permease INQ48_04340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family INQ48_04340 PF00356 Bacterial regulatory proteins, lacI family INQ48_04350 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_04355 PF12833 Helix-turn-helix domain INQ48_04360 PF02540 NAD synthase INQ48_04365 PF02253 Phospholipase A1 INQ48_04375 PF13361 UvrD-like helicase C-terminal domain INQ48_04375 PF00580 UvrD/REP helicase N-terminal domain INQ48_04380 PF03547 Membrane transport protein INQ48_04395 PF17764 3′ DNA-binding domain (3′BD) INQ48_04395 PF00270 DEAD/DEAH box helicase INQ48_04395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain INQ48_04395 PF00271 Helicase conserved C-terminal domain INQ48_04395 PF18074 Primosomal protein N C-terminal domain INQ48_04400 PF01208 Uroporphyrinogen decarboxylase (URO-D) INQ48_04405 PF07690 Major Facilitator Superfamily INQ48_04410 PF00578 AhpC/TSA family INQ48_04415 PF02683 Cytochrome C biogenesis protein transmembrane region INQ48_04415 PF11412 Disulphide bond corrector protein DsbC INQ48_04415 PF13098 Thioredoxin-like domain INQ48_04420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INQ48_04420 PF01411 tRNA synthetases class II (A) INQ48_04420 PF02272 DHHA1 domain INQ48_04425 PF07995 Glucose / Sorbosone dehydrogenase INQ48_04430 PF00356 Bacterial regulatory proteins, lacI family INQ48_04450 PF13302 Acetyltransferase (GNAT) domain INQ48_04460 PF00107 Zinc-binding dehydrogenase INQ48_04460 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_04465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_04465 PF03466 LysR substrate binding domain INQ48_04470 PF00106 short chain dehydrogenase INQ48_04475 PF02633 Creatinine amidohydrolase INQ48_04480 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_04485 PF01810 LysE type translocator INQ48_04495 PF02567 Phenazine biosynthesis-like protein INQ48_04500 PF00043 Glutathione S-transferase, C-terminal domain INQ48_04500 PF13417 Glutathione S-transferase, N-terminal domain INQ48_04505 PF02567 Phenazine biosynthesis-like protein INQ48_04510 PF01810 LysE type translocator INQ48_04515 PF00155 Aminotransferase class I and II INQ48_04520 PF00892 EamA-like transporter family INQ48_04530 PF00392 Bacterial regulatory proteins, gntR family INQ48_04545 PF01266 FAD dependent oxidoreductase INQ48_04550 PF16363 GDP-mannose 4,6 dehydratase INQ48_04555 PF04321 RmlD substrate binding domain INQ48_04560 PF00483 Nucleotidyl transferase INQ48_04565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase INQ48_04575 PF05523 WxcM-like, C-terminal INQ48_04580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INQ48_04585 PF00535 Glycosyl transferase family 2 INQ48_04595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INQ48_04600 PF08889 WbqC-like protein family INQ48_04625 PF00535 Glycosyl transferase family 2 INQ48_04645 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_04650 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_04650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 INQ48_04655 PF00005 ABC transporter INQ48_04660 PF01061 ABC-2 type transporter INQ48_04665 PF00535 Glycosyl transferase family 2 INQ48_04670 PF00535 Glycosyl transferase family 2 INQ48_04675 PF01757 Acyltransferase family INQ48_04685 PF00953 Glycosyl transferase family 4 INQ48_04690 PF00696 Amino acid kinase family INQ48_04695 PF00440 Bacterial regulatory proteins, tetR family INQ48_04700 PF00199 Catalase INQ48_04700 PF06628 Catalase-related immune-responsive INQ48_04705 PF02615 Malate/L-lactate dehydrogenase INQ48_04715 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus INQ48_04715 PF08666 SAF domain INQ48_04720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_04730 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_04735 PF07729 FCD domain INQ48_04735 PF00392 Bacterial regulatory proteins, gntR family INQ48_04750 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_04755 PF07702 UTRA domain INQ48_04755 PF00392 Bacterial regulatory proteins, gntR family INQ48_04760 PF13458 Periplasmic binding protein INQ48_04765 PF02653 Branched-chain amino acid transport system / permease component INQ48_04770 PF02653 Branched-chain amino acid transport system / permease component INQ48_04770 PF11862 Domain of unknown function (DUF3382) INQ48_04775 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_04775 PF00005 ABC transporter INQ48_04780 PF00005 ABC transporter INQ48_04785 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_04790 PF00330 Aconitase family (aconitate hydratase) INQ48_04795 PF00694 Aconitase C-terminal domain INQ48_04805 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_04810 PF02538 Hydantoinase B/oxoprolinase INQ48_04815 PF01968 Hydantoinase/oxoprolinase INQ48_04815 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_04825 PF01494 FAD binding domain INQ48_04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_04835 PF03466 LysR substrate binding domain INQ48_04840 PF00106 short chain dehydrogenase INQ48_04850 PF12806 Acetyl-CoA dehydrogenase C-terminal like INQ48_04850 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_04850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_04850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_04860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_04860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_04860 PF00378 Enoyl-CoA hydratase/isomerase INQ48_04865 PF04480 Protein of unknown function (DUF559) INQ48_04870 PF00108 Thiolase, N-terminal domain INQ48_04870 PF02803 Thiolase, C-terminal domain INQ48_04885 PF01323 DSBA-like thioredoxin domain INQ48_04890 PF00378 Enoyl-CoA hydratase/isomerase INQ48_04895 PF13458 Periplasmic binding protein INQ48_04900 PF03061 Thioesterase superfamily INQ48_04905 PF00664 ABC transporter transmembrane region INQ48_04905 PF00005 ABC transporter INQ48_04910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_04910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_04915 PF01425 Amidase INQ48_04920 PF03466 LysR substrate binding domain INQ48_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_04925 PF10415 Fumarase C C-terminus INQ48_04925 PF00206 Lyase INQ48_04930 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_04935 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_04940 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_04945 PF00005 ABC transporter INQ48_04955 PF02798 Glutathione S-transferase, N-terminal domain INQ48_04955 PF00043 Glutathione S-transferase, C-terminal domain INQ48_04960 PF01638 HxlR-like helix-turn-helix INQ48_04965 PF01156 Inosine-uridine preferring nucleoside hydrolase INQ48_04975 PF01965 DJ-1/PfpI family INQ48_04980 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_04985 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_04985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_04990 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_05000 PF13361 UvrD-like helicase C-terminal domain INQ48_05000 PF00580 UvrD/REP helicase N-terminal domain INQ48_05010 PF03060 Nitronate monooxygenase INQ48_05015 PF01012 Electron transfer flavoprotein domain INQ48_05015 PF00766 Electron transfer flavoprotein FAD-binding domain INQ48_05020 PF01012 Electron transfer flavoprotein domain INQ48_05025 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05030 PF00501 AMP-binding enzyme INQ48_05030 PF13193 AMP-binding enzyme C-terminal domain INQ48_05035 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05040 PF02515 CoA-transferase family III INQ48_05045 PF00378 Enoyl-CoA hydratase/isomerase INQ48_05050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_05050 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_05050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_05055 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_05055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_05055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_05060 PF00108 Thiolase, N-terminal domain INQ48_05060 PF02803 Thiolase, C-terminal domain INQ48_05065 PF00378 Enoyl-CoA hydratase/isomerase INQ48_05065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_05065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05070 PF03466 LysR substrate binding domain INQ48_05075 PF00392 Bacterial regulatory proteins, gntR family INQ48_05075 PF07702 UTRA domain INQ48_05080 PF00330 Aconitase family (aconitate hydratase) INQ48_05085 PF00694 Aconitase C-terminal domain INQ48_05090 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05100 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05105 PF04909 Amidohydrolase INQ48_05110 PF03737 Aldolase/RraA INQ48_05125 PF00512 His Kinase A (phospho-acceptor) domain INQ48_05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_05130 PF01979 Amidohydrolase family INQ48_05145 PF01435 Peptidase family M48 INQ48_05155 PF01613 Flavin reductase like domain INQ48_05170 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_05175 PF03595 Voltage-dependent anion channel INQ48_05190 PF02311 AraC-like ligand binding domain INQ48_05190 PF12833 Helix-turn-helix domain INQ48_05200 PF01047 MarR family INQ48_05210 PF07869 Protein of unknown function (DUF1656) INQ48_05215 PF13533 Biotin-lipoyl like INQ48_05220 PF02321 Outer membrane efflux protein INQ48_05225 PF07690 Major Facilitator Superfamily INQ48_05235 PF01479 S4 domain INQ48_05235 PF00849 RNA pseudouridylate synthase INQ48_05240 PF16123 Hydroxyacylglutathione hydrolase C-terminus INQ48_05240 PF00753 Metallo-beta-lactamase superfamily INQ48_05245 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05250 PF03466 LysR substrate binding domain INQ48_05255 PF00962 Adenosine/AMP deaminase INQ48_05260 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_05265 PF06906 Protein of unknown function (DUF1272) INQ48_05285 PF00474 Sodium:solute symporter family INQ48_05290 PF01979 Amidohydrolase family INQ48_05295 PF07690 Major Facilitator Superfamily INQ48_05300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INQ48_05315 PF01361 Tautomerase enzyme INQ48_05325 PF03466 LysR substrate binding domain INQ48_05325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05340 PF01636 Phosphotransferase enzyme family INQ48_05345 PF01042 Endoribonuclease L-PSP INQ48_05360 PF00248 Aldo/keto reductase family INQ48_05365 PF07690 Major Facilitator Superfamily INQ48_05385 PF01323 DSBA-like thioredoxin domain INQ48_05390 PF03466 LysR substrate binding domain INQ48_05390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05395 PF02678 Pirin INQ48_05395 PF17954 Quercetinase C-terminal cupin domain INQ48_05400 PF00857 Isochorismatase family INQ48_05410 PF07969 Amidohydrolase family INQ48_05420 PF07690 Major Facilitator Superfamily INQ48_05425 PF00561 alpha/beta hydrolase fold INQ48_05430 PF01678 Diaminopimelate epimerase INQ48_05445 PF02899 Phage integrase, N-terminal SAM-like domain INQ48_05445 PF00589 Phage integrase family INQ48_05450 PF17785 PUA-like domain INQ48_05450 PF10672 S-adenosylmethionine-dependent methyltransferase INQ48_05455 PF07683 Cobalamin synthesis protein cobW C-terminal domain INQ48_05455 PF02492 CobW/HypB/UreG, nucleotide-binding domain INQ48_05465 PF01258 Prokaryotic dksA/traR C4-type zinc finger INQ48_05475 PF00227 Proteasome subunit INQ48_05480 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_05480 PF07724 AAA domain (Cdc48 subfamily) INQ48_05485 PF02381 MraZ protein, putative antitoxin-like INQ48_05490 PF01795 MraW methylase family INQ48_05500 PF03717 Penicillin-binding Protein dimerisation domain INQ48_05500 PF00905 Penicillin binding protein transpeptidase domain INQ48_05505 PF08245 Mur ligase middle domain INQ48_05505 PF02875 Mur ligase family, glutamate ligase domain INQ48_05510 PF08245 Mur ligase middle domain INQ48_05510 PF02875 Mur ligase family, glutamate ligase domain INQ48_05510 PF01225 Mur ligase family, catalytic domain INQ48_05515 PF00953 Glycosyl transferase family 4 INQ48_05515 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 INQ48_05520 PF02875 Mur ligase family, glutamate ligase domain INQ48_05520 PF08245 Mur ligase middle domain INQ48_05525 PF01098 Cell cycle protein INQ48_05530 PF03033 Glycosyltransferase family 28 N-terminal domain INQ48_05530 PF04101 Glycosyltransferase family 28 C-terminal domain INQ48_05535 PF01225 Mur ligase family, catalytic domain INQ48_05535 PF08245 Mur ligase middle domain INQ48_05535 PF02875 Mur ligase family, glutamate ligase domain INQ48_05540 PF07478 D-ala D-ala ligase C-terminus INQ48_05540 PF01820 D-ala D-ala ligase N-terminus INQ48_05545 PF08478 POTRA domain, FtsQ-type INQ48_05545 PF03799 Cell division protein FtsQ INQ48_05550 PF02491 SHS2 domain inserted in FTSA INQ48_05555 PF12327 FtsZ family, C-terminal domain INQ48_05555 PF00091 Tubulin/FtsZ family, GTPase domain INQ48_05560 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase INQ48_05570 PF01757 Acyltransferase family INQ48_05575 PF02075 Crossover junction endodeoxyribonuclease RuvC INQ48_05595 PF00912 Transglycosylase INQ48_05600 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_05600 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_05600 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_05610 PF00773 RNB domain INQ48_05610 PF00575 S1 RNA binding domain INQ48_05610 PF08206 Ribonuclease B OB domain INQ48_05610 PF17876 Cold shock domain INQ48_05615 PF05728 Uncharacterised protein family (UPF0227) INQ48_05620 PF00072 Response regulator receiver domain INQ48_05620 PF00196 Bacterial regulatory proteins, luxR family INQ48_05630 PF01098 Cell cycle protein INQ48_05635 PF01523 Putative modulator of DNA gyrase INQ48_05645 PF00793 DAHP synthetase I family INQ48_05660 PF01225 Mur ligase family, catalytic domain INQ48_05660 PF08245 Mur ligase middle domain INQ48_05660 PF02875 Mur ligase family, glutamate ligase domain INQ48_05670 PF00578 AhpC/TSA family INQ48_05675 PF00364 Biotin-requiring enzyme INQ48_05680 PF00289 Biotin carboxylase, N-terminal domain INQ48_05680 PF02785 Biotin carboxylase C-terminal domain INQ48_05680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_05695 PF00294 pfkB family carbohydrate kinase INQ48_05705 PF00268 Ribonucleotide reductase, small chain INQ48_05710 PF02867 Ribonucleotide reductase, barrel domain INQ48_05710 PF03477 ATP cone domain INQ48_05710 PF00317 Ribonucleotide reductase, all-alpha domain INQ48_05715 PF01510 N-acetylmuramoyl-L-alanine amidase INQ48_05720 PF00072 Response regulator receiver domain INQ48_05720 PF00158 Sigma-54 interaction domain INQ48_05720 PF02954 Bacterial regulatory protein, Fis family INQ48_05725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_05725 PF00512 His Kinase A (phospho-acceptor) domain INQ48_05735 PF01578 Cytochrome C assembly protein INQ48_05740 PF02978 Signal peptide binding domain INQ48_05740 PF02881 SRP54-type protein, helical bundle domain INQ48_05740 PF00448 SRP54-type protein, GTPase domain INQ48_05755 PF00535 Glycosyl transferase family 2 INQ48_05765 PF00158 Sigma-54 interaction domain INQ48_05765 PF00072 Response regulator receiver domain INQ48_05775 PF00512 His Kinase A (phospho-acceptor) domain INQ48_05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_05780 PF04055 Radical SAM superfamily INQ48_05780 PF00919 Uncharacterized protein family UPF0004 INQ48_05780 PF01938 TRAM domain INQ48_05790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_05790 PF00529 HlyD membrane-fusion protein of T1SS INQ48_05795 PF00873 AcrB/AcrD/AcrF family INQ48_05800 PF03466 LysR substrate binding domain INQ48_05800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05805 PF03746 LamB/YcsF family INQ48_05810 PF00364 Biotin-requiring enzyme INQ48_05815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_05815 PF02785 Biotin carboxylase C-terminal domain INQ48_05815 PF00289 Biotin carboxylase, N-terminal domain INQ48_05825 PF02626 Carboxyltransferase domain, subdomain A and B INQ48_05830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family INQ48_05835 PF00005 ABC transporter INQ48_05840 PF02653 Branched-chain amino acid transport system / permease component INQ48_05845 PF00300 Histidine phosphatase superfamily (branch 1) INQ48_05855 PF01171 PP-loop family INQ48_05875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_05885 PF00005 ABC transporter INQ48_05890 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_05895 PF17263 Family of unknown function (DUF5329) INQ48_05900 PF00459 Inositol monophosphatase family INQ48_05910 PF00480 ROK family INQ48_05920 PF00155 Aminotransferase class I and II INQ48_05920 PF00392 Bacterial regulatory proteins, gntR family INQ48_05930 PF00982 Glycosyltransferase family 20 INQ48_05935 PF00723 Glycosyl hydrolases family 15 INQ48_05940 PF02358 Trehalose-phosphatase INQ48_05945 PF00512 His Kinase A (phospho-acceptor) domain INQ48_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_05950 PF01743 Poly A polymerase head domain INQ48_05950 PF12627 Probable RNA and SrmB- binding site of polymerase A INQ48_05950 PF01966 HD domain INQ48_05955 PF03922 OmpW family INQ48_05960 PF13417 Glutathione S-transferase, N-terminal domain INQ48_05960 PF00043 Glutathione S-transferase, C-terminal domain INQ48_05965 PF02308 MgtC family INQ48_05970 PF14718 Soluble lytic murein transglycosylase L domain INQ48_05970 PF01464 Transglycosylase SLT domain INQ48_05975 PF01812 5-formyltetrahydrofolate cyclo-ligase family INQ48_05980 PF03466 LysR substrate binding domain INQ48_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_05995 PF00027 Cyclic nucleotide-binding domain INQ48_05995 PF13545 Crp-like helix-turn-helix domain INQ48_06005 PF12804 MobA-like NTP transferase domain INQ48_06005 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_06010 PF01037 Lrp/AsnC ligand binding domain INQ48_06015 PF01380 SIS domain INQ48_06040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_06045 PF00892 EamA-like transporter family INQ48_06050 PF03466 LysR substrate binding domain INQ48_06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06055 PF02875 Mur ligase family, glutamate ligase domain INQ48_06055 PF08245 Mur ligase middle domain INQ48_06055 PF01225 Mur ligase family, catalytic domain INQ48_06065 PF01263 Aldose 1-epimerase INQ48_06080 PF08450 SMP-30/Gluconolactonase/LRE-like region INQ48_06090 PF03466 LysR substrate binding domain INQ48_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06095 PF00171 Aldehyde dehydrogenase family INQ48_06100 PF13407 Periplasmic binding protein domain INQ48_06105 PF13407 Periplasmic binding protein domain INQ48_06110 PF00005 ABC transporter INQ48_06115 PF02653 Branched-chain amino acid transport system / permease component INQ48_06120 PF00005 ABC transporter INQ48_06125 PF02653 Branched-chain amino acid transport system / permease component INQ48_06130 PF02653 Branched-chain amino acid transport system / permease component INQ48_06135 PF00920 Dehydratase family INQ48_06140 PF00701 Dihydrodipicolinate synthetase family INQ48_06150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06160 PF00005 ABC transporter INQ48_06165 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_06165 PF00005 ABC transporter INQ48_06170 PF02653 Branched-chain amino acid transport system / permease component INQ48_06175 PF02653 Branched-chain amino acid transport system / permease component INQ48_06180 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INQ48_06180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_06185 PF00171 Aldehyde dehydrogenase family INQ48_06190 PF01425 Amidase INQ48_06195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_06200 PF00005 ABC transporter INQ48_06200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_06205 PF00005 ABC transporter INQ48_06205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_06210 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_06210 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06215 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06220 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_06240 PF08245 Mur ligase middle domain INQ48_06240 PF08443 RimK-like ATP-grasp domain INQ48_06240 PF02875 Mur ligase family, glutamate ligase domain INQ48_06245 PF08245 Mur ligase middle domain INQ48_06245 PF02875 Mur ligase family, glutamate ligase domain INQ48_06245 PF08443 RimK-like ATP-grasp domain INQ48_06250 PF00005 ABC transporter INQ48_06250 PF00664 ABC transporter transmembrane region INQ48_06265 PF06508 Queuosine biosynthesis protein QueC INQ48_06270 PF06472 ABC transporter transmembrane region 2 INQ48_06270 PF00005 ABC transporter INQ48_06275 PF01966 HD domain INQ48_06285 PF00005 ABC transporter INQ48_06285 PF08402 TOBE domain INQ48_06290 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06295 PF05430 S-adenosyl-L-methionine-dependent methyltransferase INQ48_06295 PF01266 FAD dependent oxidoreductase INQ48_06300 PF13419 Haloacid dehalogenase-like hydrolase INQ48_06305 PF07690 Major Facilitator Superfamily INQ48_06310 PF00392 Bacterial regulatory proteins, gntR family INQ48_06310 PF07729 FCD domain INQ48_06315 PF09084 NMT1/THI5 like INQ48_06320 PF00005 ABC transporter INQ48_06325 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06330 PF00282 Pyridoxal-dependent decarboxylase conserved domain INQ48_06335 PF01979 Amidohydrolase family INQ48_06340 PF00860 Permease family INQ48_06345 PF03466 LysR substrate binding domain INQ48_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06350 PF05506 Domain of unknown function (DUF756) INQ48_06350 PF04185 Phosphoesterase family INQ48_06360 PF05506 Domain of unknown function (DUF756) INQ48_06360 PF04185 Phosphoesterase family INQ48_06365 PF04185 Phosphoesterase family INQ48_06365 PF05506 Domain of unknown function (DUF756) INQ48_06390 PF00482 Type II secretion system (T2SS), protein F INQ48_06395 PF00437 Type II/IV secretion system protein INQ48_06400 PF00263 Bacterial type II and III secretion system protein INQ48_06400 PF03958 Bacterial type II/III secretion system short domain INQ48_06425 PF07963 Prokaryotic N-terminal methylation motif INQ48_06425 PF11612 Type II secretion system (T2SS), protein J INQ48_06430 PF02501 Type II secretion system (T2SS), protein I INQ48_06430 PF07963 Prokaryotic N-terminal methylation motif INQ48_06440 PF08334 Type II secretion system (T2SS), protein G INQ48_06440 PF07963 Prokaryotic N-terminal methylation motif INQ48_06450 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_06450 PF00585 C-terminal regulatory domain of Threonine dehydratase INQ48_06460 PF13609 Gram-negative porin INQ48_06465 PF02566 OsmC-like protein INQ48_06470 PF03232 Ubiquinone biosynthesis protein COQ7 INQ48_06475 PF13609 Gram-negative porin INQ48_06480 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06485 PF07687 Peptidase dimerisation domain INQ48_06485 PF01546 Peptidase family M20/M25/M40 INQ48_06495 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06495 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_06500 PF00005 ABC transporter INQ48_06500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_06505 PF00005 ABC transporter INQ48_06505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_06510 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase INQ48_06515 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain INQ48_06515 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain INQ48_06525 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06530 PF00005 ABC transporter INQ48_06530 PF08402 TOBE domain INQ48_06540 PF08212 Lipocalin-like domain INQ48_06545 PF00923 Transaldolase/Fructose-6-phosphate aldolase INQ48_06550 PF00342 Phosphoglucose isomerase INQ48_06560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA INQ48_06565 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_06570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06570 PF03466 LysR substrate binding domain INQ48_06580 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06585 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06590 PF03459 TOBE domain INQ48_06590 PF17912 MalK OB fold domain INQ48_06590 PF00005 ABC transporter INQ48_06595 PF08125 Mannitol dehydrogenase C-terminal domain INQ48_06595 PF01232 Mannitol dehydrogenase Rossmann domain INQ48_06605 PF00923 Transaldolase/Fructose-6-phosphate aldolase INQ48_06610 PF00294 pfkB family carbohydrate kinase INQ48_06615 PF12833 Helix-turn-helix domain INQ48_06620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_06620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_06630 PF13404 AsnC-type helix-turn-helix domain INQ48_06630 PF01037 Lrp/AsnC ligand binding domain INQ48_06635 PF00118 TCP-1/cpn60 chaperonin family INQ48_06640 PF00166 Chaperonin 10 Kd subunit INQ48_06645 PF01022 Bacterial regulatory protein, arsR family INQ48_06650 PF02040 Arsenical pump membrane protein INQ48_06655 PF03960 ArsC family INQ48_06660 PF03358 NADPH-dependent FMN reductase INQ48_06665 PF03466 LysR substrate binding domain INQ48_06665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_06670 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_06685 PF01699 Sodium/calcium exchanger protein INQ48_06690 PF00440 Bacterial regulatory proteins, tetR family INQ48_06700 PF00486 Transcriptional regulatory protein, C terminal INQ48_06700 PF00072 Response regulator receiver domain INQ48_06705 PF00486 Transcriptional regulatory protein, C terminal INQ48_06705 PF00072 Response regulator receiver domain INQ48_06710 PF00419 Fimbrial protein INQ48_06715 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain INQ48_06715 PF02753 Pili assembly chaperone PapD, C-terminal domain INQ48_06720 PF13953 PapC C-terminal domain INQ48_06720 PF13954 PapC N-terminal domain INQ48_06720 PF00577 Outer membrane usher protein INQ48_06725 PF00419 Fimbrial protein INQ48_06730 PF00419 Fimbrial protein INQ48_06735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain INQ48_06735 PF02753 Pili assembly chaperone PapD, C-terminal domain INQ48_06740 PF13953 PapC C-terminal domain INQ48_06740 PF00577 Outer membrane usher protein INQ48_06740 PF13954 PapC N-terminal domain INQ48_06750 PF13091 PLD-like domain INQ48_06755 PF00593 TonB dependent receptor INQ48_06755 PF07715 TonB-dependent Receptor Plug Domain INQ48_06770 PF00593 TonB dependent receptor INQ48_06770 PF07715 TonB-dependent Receptor Plug Domain INQ48_06775 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_06780 PF00005 ABC transporter INQ48_06790 PF00486 Transcriptional regulatory protein, C terminal INQ48_06790 PF00072 Response regulator receiver domain INQ48_06795 PF00512 His Kinase A (phospho-acceptor) domain INQ48_06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_06800 PF02772 S-adenosylmethionine synthetase, central domain INQ48_06800 PF02773 S-adenosylmethionine synthetase, C-terminal domain INQ48_06800 PF00438 S-adenosylmethionine synthetase, N-terminal domain INQ48_06810 PF03279 Bacterial lipid A biosynthesis acyltransferase INQ48_06815 PF00561 alpha/beta hydrolase fold INQ48_06820 PF01926 50S ribosome-binding GTPase INQ48_06825 PF00034 Cytochrome c INQ48_06830 PF05140 ResB-like family INQ48_06835 PF01578 Cytochrome C assembly protein INQ48_06840 PF00174 Oxidoreductase molybdopterin binding domain INQ48_06845 PF01794 Ferric reductase like transmembrane component INQ48_06850 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain INQ48_06850 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain INQ48_06860 PF01491 Frataxin-like domain INQ48_06865 PF00905 Penicillin binding protein transpeptidase domain INQ48_06865 PF17092 Penicillin-binding protein OB-like domain INQ48_06865 PF00912 Transglycosylase INQ48_06870 PF11104 Type IV pilus assembly protein PilM; INQ48_06875 PF05137 Fimbrial assembly protein (PilN) INQ48_06885 PF04351 Pilus assembly protein, PilP INQ48_06890 PF07660 Secretin and TonB N terminus short domain INQ48_06890 PF00263 Bacterial type II and III secretion system protein INQ48_06890 PF03958 Bacterial type II/III secretion system short domain INQ48_06890 PF11741 AMIN domain INQ48_06895 PF01202 Shikimate kinase INQ48_06900 PF01761 3-dehydroquinate synthase INQ48_06905 PF13286 Phosphohydrolase-associated domain INQ48_06905 PF01966 HD domain INQ48_06935 PF04898 Glutamate synthase central domain INQ48_06935 PF01493 GXGXG motif INQ48_06935 PF01645 Conserved region in glutamate synthase INQ48_06935 PF00310 Glutamine amidotransferases class-II INQ48_06940 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_06940 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster INQ48_06945 PF00005 ABC transporter INQ48_06950 PF02405 Permease MlaE INQ48_06955 PF02470 MlaD protein INQ48_06960 PF04333 MlaA lipoprotein INQ48_06980 PF00005 ABC transporter INQ48_06985 PF01061 ABC-2 type transporter INQ48_06990 PF01722 BolA-like protein INQ48_06995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INQ48_07000 PF01634 ATP phosphoribosyltransferase INQ48_07005 PF00815 Histidinol dehydrogenase INQ48_07020 PF00155 Aminotransferase class I and II INQ48_07025 PF00475 Imidazoleglycerol-phosphate dehydratase INQ48_07030 PF00117 Glutamine amidotransferase class-I INQ48_07035 PF00977 Histidine biosynthesis protein INQ48_07050 PF00375 Sodium:dicarboxylate symporter family INQ48_07060 PF00977 Histidine biosynthesis protein INQ48_07065 PF01502 Phosphoribosyl-AMP cyclohydrolase INQ48_07070 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase INQ48_07080 PF01230 HIT domain INQ48_07085 PF02416 mttA/Hcf106 family INQ48_07090 PF02416 mttA/Hcf106 family INQ48_07095 PF00902 Sec-independent protein translocase protein (TatC) INQ48_07100 PF17820 PDZ domain INQ48_07100 PF13180 PDZ domain INQ48_07105 PF01784 NIF3 (NGG1p interacting factor 3) INQ48_07110 PF04166 Pyridoxal phosphate biosynthetic protein PdxA INQ48_07115 PF01741 Large-conductance mechanosensitive channel, MscL INQ48_07120 PF02563 Polysaccharide biosynthesis/export protein INQ48_07120 PF10531 SLBB domain INQ48_07125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain INQ48_07125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain INQ48_07125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain INQ48_07130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INQ48_07130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INQ48_07135 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_07140 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INQ48_07175 PF08485 Polysaccharide biosynthesis protein C-terminal INQ48_07175 PF02719 Polysaccharide biosynthesis protein INQ48_07180 PF01370 NAD dependent epimerase/dehydratase family INQ48_07185 PF02350 UDP-N-acetylglucosamine 2-epimerase INQ48_07195 PF02397 Bacterial sugar transferase INQ48_07200 PF14602 Hexapeptide repeat of succinyl-transferase INQ48_07200 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_07200 PF17836 PglD N-terminal domain INQ48_07205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INQ48_07210 PF01451 Low molecular weight phosphotyrosine protein phosphatase INQ48_07215 PF02706 Chain length determinant protein INQ48_07215 PF13807 G-rich domain on putative tyrosine kinase INQ48_07215 PF13614 AAA domain INQ48_07220 PF02719 Polysaccharide biosynthesis protein INQ48_07225 PF06082 Exopolysaccharide biosynthesis protein YbjH INQ48_07240 PF00196 Bacterial regulatory proteins, luxR family INQ48_07240 PF00072 Response regulator receiver domain INQ48_07245 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal INQ48_07245 PF00355 Rieske [2Fe-2S] domain INQ48_07250 PF00032 Cytochrome b(C-terminal)/b6/petD INQ48_07250 PF00033 Cytochrome b/b6/petB INQ48_07255 PF02167 Cytochrome C1 family INQ48_07260 PF00043 Glutathione S-transferase, C-terminal domain INQ48_07260 PF02798 Glutathione S-transferase, N-terminal domain INQ48_07265 PF04386 Stringent starvation protein B INQ48_07280 PF01757 Acyltransferase family INQ48_07300 PF05762 VWA domain containing CoxE-like protein INQ48_07310 PF07728 AAA domain (dynein-related subfamily) INQ48_07315 PF13569 Domain of unknown function (DUF4132) INQ48_07320 PF13569 Domain of unknown function (DUF4132) INQ48_07325 PF00106 short chain dehydrogenase INQ48_07330 PF01368 DHH family INQ48_07330 PF02272 DHHA1 domain INQ48_07330 PF17768 RecJ OB domain INQ48_07340 PF02687 FtsX-like permease family INQ48_07340 PF12704 MacB-like periplasmic core domain INQ48_07345 PF00005 ABC transporter INQ48_07350 PF12680 SnoaL-like domain INQ48_07350 PF04542 Sigma-70 region 2 INQ48_07350 PF08281 Sigma-70, region 4 INQ48_07355 PF00574 Clp protease INQ48_07360 PF01042 Endoribonuclease L-PSP INQ48_07370 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_07375 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_07375 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_07380 PF00005 ABC transporter INQ48_07380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_07385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_07385 PF00005 ABC transporter INQ48_07395 PF01418 Helix-turn-helix domain, rpiR family INQ48_07395 PF01380 SIS domain INQ48_07400 PF07969 Amidohydrolase family INQ48_07405 PF03471 Transporter associated domain INQ48_07405 PF03741 Integral membrane protein TerC family INQ48_07410 PF01613 Flavin reductase like domain INQ48_07435 PF01575 MaoC like domain INQ48_07435 PF00171 Aldehyde dehydrogenase family INQ48_07440 PF00005 ABC transporter INQ48_07445 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_07445 PF00005 ABC transporter INQ48_07460 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_07460 PF00970 Oxidoreductase FAD-binding domain INQ48_07460 PF00175 Oxidoreductase NAD-binding domain INQ48_07465 PF01883 Iron-sulfur cluster assembly protein INQ48_07470 PF05138 Phenylacetic acid catabolic protein INQ48_07475 PF06243 Phenylacetic acid degradation B INQ48_07480 PF05138 Phenylacetic acid catabolic protein INQ48_07485 PF01804 Penicillin amidase INQ48_07490 PF00501 AMP-binding enzyme INQ48_07490 PF14535 AMP-binding enzyme C-terminal domain INQ48_07495 PF03061 Thioesterase superfamily INQ48_07500 PF00378 Enoyl-CoA hydratase/isomerase INQ48_07505 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_07510 PF00440 Bacterial regulatory proteins, tetR family INQ48_07515 PF00106 short chain dehydrogenase INQ48_07525 PF13519 von Willebrand factor type A domain INQ48_07525 PF07584 Aerotolerance regulator N-terminal INQ48_07530 PF01882 Protein of unknown function DUF58 INQ48_07535 PF07726 ATPase family associated with various cellular activities (AAA) INQ48_07535 PF17863 AAA lid domain INQ48_07540 PF00595 PDZ domain INQ48_07545 PF01026 TatD related DNase INQ48_07565 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain INQ48_07565 PF00437 Type II/IV secretion system protein INQ48_07575 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_07580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_07580 PF03466 LysR substrate binding domain INQ48_07585 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_07600 PF00106 short chain dehydrogenase INQ48_07615 PF00107 Zinc-binding dehydrogenase INQ48_07615 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_07625 PF13593 SBF-like CPA transporter family (DUF4137) INQ48_07630 PF02690 Na+/Pi-cotransporter INQ48_07635 PF00149 Calcineurin-like phosphoesterase INQ48_07640 PF17850 CysA C-terminal regulatory domain INQ48_07640 PF00005 ABC transporter INQ48_07640 PF12857 TOBE-like domain INQ48_07645 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_07650 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_07660 PF00356 Bacterial regulatory proteins, lacI family INQ48_07665 PF01252 Signal peptidase (SPase) II INQ48_07670 PF08264 Anticodon-binding domain of tRNA INQ48_07670 PF00133 tRNA synthetases class I (I, L, M and V) INQ48_07670 PF06827 Zinc finger found in FPG and IleRS INQ48_07675 PF01687 Riboflavin kinase INQ48_07675 PF06574 FAD synthetase INQ48_07685 PF00378 Enoyl-CoA hydratase/isomerase INQ48_07695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_07695 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_07695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_07700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_07700 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_07700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_07705 PF00551 Formyl transferase INQ48_07725 PF01029 NusB family INQ48_07725 PF01189 16S rRNA methyltransferase RsmB/F INQ48_07735 PF00471 Ribosomal protein L33 INQ48_07740 PF00830 Ribosomal L28 family INQ48_07745 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_07750 PF00027 Cyclic nucleotide-binding domain INQ48_07750 PF13545 Crp-like helix-turn-helix domain INQ48_07755 PF13491 4TM region of DNA translocase FtsK/SpoIIIE INQ48_07755 PF01580 FtsK/SpoIIIE family INQ48_07755 PF17854 FtsK alpha domain INQ48_07755 PF09397 Ftsk gamma domain INQ48_07760 PF03548 Outer membrane lipoprotein carrier protein LolA INQ48_07765 PF12002 MgsA AAA+ ATPase C terminal INQ48_07765 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_07765 PF16193 AAA C-terminal domain INQ48_07770 PF02653 Branched-chain amino acid transport system / permease component INQ48_07775 PF02653 Branched-chain amino acid transport system / permease component INQ48_07775 PF11862 Domain of unknown function (DUF3382) INQ48_07780 PF00005 ABC transporter INQ48_07780 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_07785 PF00005 ABC transporter INQ48_07790 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_07795 PF00175 Oxidoreductase NAD-binding domain INQ48_07795 PF00970 Oxidoreductase FAD-binding domain INQ48_07795 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_07805 PF07715 TonB-dependent Receptor Plug Domain INQ48_07805 PF07660 Secretin and TonB N terminus short domain INQ48_07805 PF00593 TonB dependent receptor INQ48_07825 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_07830 PF00293 NUDIX domain INQ48_07830 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain INQ48_07830 PF09297 NADH pyrophosphatase zinc ribbon domain INQ48_07835 PF01206 Sulfurtransferase TusA INQ48_07840 PF00483 Nucleotidyl transferase INQ48_07845 PF00133 tRNA synthetases class I (I, L, M and V) INQ48_07845 PF10458 Valyl tRNA synthetase tRNA binding arm INQ48_07845 PF08264 Anticodon-binding domain of tRNA INQ48_07850 PF03883 Peroxide stress protein YaaA INQ48_07860 PF00561 alpha/beta hydrolase fold INQ48_07865 PF14489 QueF-like protein INQ48_07865 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term INQ48_07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_07875 PF03466 LysR substrate binding domain INQ48_07880 PF13378 Enolase C-terminal domain-like INQ48_07880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain INQ48_07885 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_07890 PF17645 Arylmalonate decarboxylase INQ48_07920 PF11798 IMS family HHH motif INQ48_07920 PF11799 impB/mucB/samB family C-terminal domain INQ48_07920 PF00817 impB/mucB/samB family INQ48_07950 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_07955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_07955 PF03466 LysR substrate binding domain INQ48_07960 PF07519 Tannase and feruloyl esterase INQ48_07970 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_07975 PF00083 Sugar (and other) transporter INQ48_07980 PF01070 FMN-dependent dehydrogenase INQ48_07985 PF03466 LysR substrate binding domain INQ48_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_07990 PF02652 L-lactate permease INQ48_08005 PF02560 Cyanate lyase C-terminal domain INQ48_08010 PF00106 short chain dehydrogenase INQ48_08015 PF00171 Aldehyde dehydrogenase family INQ48_08025 PF00072 Response regulator receiver domain INQ48_08025 PF00486 Transcriptional regulatory protein, C terminal INQ48_08030 PF00672 HAMP domain INQ48_08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_08030 PF00512 His Kinase A (phospho-acceptor) domain INQ48_08045 PF00486 Transcriptional regulatory protein, C terminal INQ48_08045 PF00072 Response regulator receiver domain INQ48_08050 PF07244 Surface antigen variable number repeat INQ48_08050 PF01103 Surface antigen INQ48_08060 PF13609 Gram-negative porin INQ48_08075 PF03707 Bacterial signalling protein N terminal repeat INQ48_08075 PF13188 PAS domain INQ48_08075 PF00563 EAL domain INQ48_08075 PF00990 Diguanylate cyclase, GGDEF domain INQ48_08085 PF07690 Major Facilitator Superfamily INQ48_08090 PF00392 Bacterial regulatory proteins, gntR family INQ48_08090 PF07729 FCD domain INQ48_08095 PF04536 TPM domain INQ48_08100 PF00912 Transglycosylase INQ48_08100 PF00905 Penicillin binding protein transpeptidase domain INQ48_08110 PF01810 LysE type translocator INQ48_08125 PF01425 Amidase INQ48_08135 PF00083 Sugar (and other) transporter INQ48_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_08150 PF00144 Beta-lactamase INQ48_08165 PF13193 AMP-binding enzyme C-terminal domain INQ48_08165 PF00501 AMP-binding enzyme INQ48_08170 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_08180 PF00356 Bacterial regulatory proteins, lacI family INQ48_08225 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_08225 PF04717 Type VI secretion system, phage-baseplate injector INQ48_08240 PF04545 Sigma-70, region 4 INQ48_08240 PF04542 Sigma-70 region 2 INQ48_08260 PF02321 Outer membrane efflux protein INQ48_08265 PF00873 AcrB/AcrD/AcrF family INQ48_08270 PF00529 HlyD membrane-fusion protein of T1SS INQ48_08270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_08280 PF00206 Lyase INQ48_08280 PF14698 Argininosuccinate lyase C-terminal INQ48_08285 PF07694 5TMR of 5TMR-LYT INQ48_08285 PF06580 Histidine kinase INQ48_08290 PF00072 Response regulator receiver domain INQ48_08290 PF04397 LytTr DNA-binding domain INQ48_08295 PF01594 AI-2E family transporter INQ48_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_08310 PF03466 LysR substrate binding domain INQ48_08315 PF07690 Major Facilitator Superfamily INQ48_08325 PF00311 Phosphoenolpyruvate carboxylase INQ48_08330 PF03900 Porphobilinogen deaminase, C-terminal domain INQ48_08330 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain INQ48_08350 PF07690 Major Facilitator Superfamily INQ48_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_08355 PF03466 LysR substrate binding domain INQ48_08360 PF00575 S1 RNA binding domain INQ48_08360 PF10150 Ribonuclease E/G family INQ48_08360 PF12111 Polyribonucleotide phosphorylase C terminal INQ48_08365 PF00849 RNA pseudouridylate synthase INQ48_08365 PF01479 S4 domain INQ48_08370 PF13419 Haloacid dehalogenase-like hydrolase INQ48_08380 PF01343 Peptidase family S49 INQ48_08385 PF07690 Major Facilitator Superfamily INQ48_08390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases INQ48_08395 PF02545 Maf-like protein INQ48_08400 PF02620 Large ribosomal RNA subunit accumulation protein YceD INQ48_08405 PF01783 Ribosomal L32p protein family INQ48_08410 PF02504 Fatty acid synthesis protein INQ48_08415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal INQ48_08415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III INQ48_08420 PF00698 Acyl transferase domain INQ48_08430 PF00550 Phosphopantetheine attachment site INQ48_08435 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_08435 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_08445 PF08281 Sigma-70, region 4 INQ48_08445 PF04542 Sigma-70 region 2 INQ48_08460 PF13180 PDZ domain INQ48_08465 PF00009 Elongation factor Tu GTP binding domain INQ48_08465 PF00679 Elongation factor G C-terminus INQ48_08465 PF06421 GTP-binding protein LepA C-terminus INQ48_08465 PF03144 Elongation factor Tu domain 2 INQ48_08470 PF10502 Signal peptidase, peptidase S26 INQ48_08480 PF00035 Double-stranded RNA binding motif INQ48_08480 PF14622 Ribonuclease-III-like INQ48_08485 PF07650 KH domain INQ48_08485 PF01926 50S ribosome-binding GTPase INQ48_08490 PF11967 Recombination protein O N terminal INQ48_08490 PF02565 Recombination protein O C terminal INQ48_08495 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ INQ48_08500 PF01648 4'-phosphopantetheinyl transferase superfamily INQ48_08505 PF00933 Glycosyl hydrolase family 3 N terminal domain INQ48_08520 PF01863 Protein of unknown function DUF45 INQ48_08525 PF00012 Hsp70 protein INQ48_08530 PF01336 OB-fold nucleic acid binding domain INQ48_08530 PF00152 tRNA synthetases class II (D, K and N) INQ48_08540 PF02325 YGGT family INQ48_08545 PF01039 Carboxyl transferase domain INQ48_08545 PF17848 Acetyl-coA carboxylase zinc finger domain INQ48_08550 PF00290 Tryptophan synthase alpha chain INQ48_08555 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_08560 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase INQ48_08565 PF01416 tRNA pseudouridine synthase INQ48_08575 PF02774 Semialdehyde dehydrogenase, dimerisation domain INQ48_08575 PF01118 Semialdehyde dehydrogenase, NAD binding domain INQ48_08580 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_08585 PF00694 Aconitase C-terminal domain INQ48_08590 PF00330 Aconitase family (aconitate hydratase) INQ48_08595 PF03466 LysR substrate binding domain INQ48_08595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_08605 PF12951 Passenger-associated-transport-repeat INQ48_08610 PF00285 Citrate synthase, C-terminal domain INQ48_08615 PF03937 Flavinator of succinate dehydrogenase INQ48_08620 PF13085 2Fe-2S iron-sulfur cluster binding domain INQ48_08625 PF02910 Fumarate reductase flavoprotein C-term INQ48_08625 PF00890 FAD binding domain INQ48_08640 PF07702 UTRA domain INQ48_08640 PF00392 Bacterial regulatory proteins, gntR family INQ48_08645 PF00056 lactate/malate dehydrogenase, NAD binding domain INQ48_08645 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain INQ48_08665 PF06434 Aconitate hydratase 2 N-terminus INQ48_08665 PF00330 Aconitase family (aconitate hydratase) INQ48_08665 PF11791 Aconitate B N-terminal domain INQ48_08695 PF05662 Coiled stalk of trimeric autotransporter adhesin INQ48_08695 PF05658 Head domain of trimeric autotransporter adhesin INQ48_08695 PF03895 YadA-like membrane anchor domain INQ48_08695 PF13018 Extended Signal Peptide of Type V secretion system INQ48_08715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_08715 PF09317 Domain of unknown function (DUF1974) INQ48_08715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_08730 PF00694 Aconitase C-terminal domain INQ48_08730 PF00330 Aconitase family (aconitate hydratase) INQ48_08740 PF03239 Iron permease FTR1 family INQ48_08745 PF13473 Cupredoxin-like domain INQ48_08745 PF09375 Imelysin INQ48_08750 PF04261 Dyp-type peroxidase family INQ48_08755 PF09375 Imelysin INQ48_08755 PF13473 Cupredoxin-like domain INQ48_08765 PF07670 Nucleoside recognition INQ48_08765 PF02421 Ferrous iron transport protein B INQ48_08765 PF07664 Ferrous iron transport protein B C terminus INQ48_08775 PF01494 FAD binding domain INQ48_08785 PF03301 Tryptophan 2,3-dioxygenase INQ48_08790 PF00266 Aminotransferase class-V INQ48_08795 PF04199 Putative cyclase INQ48_08800 PF01037 Lrp/AsnC ligand binding domain INQ48_08810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INQ48_08810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INQ48_08815 PF00202 Aminotransferase class-III INQ48_08825 PF01649 Ribosomal protein S20 INQ48_08830 PF03023 Lipid II flippase MurJ INQ48_08835 PF13369 Transglutaminase-like superfamily INQ48_08845 PF03795 YCII-related domain INQ48_08850 PF03795 YCII-related domain INQ48_08855 PF08281 Sigma-70, region 4 INQ48_08855 PF04542 Sigma-70 region 2 INQ48_08880 PF00586 AIR synthase related protein, N-terminal domain INQ48_08880 PF02769 AIR synthase related protein, C-terminal domain INQ48_08885 PF00308 Bacterial dnaA protein INQ48_08895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) INQ48_08900 PF01865 Protein of unknown function DUF47 INQ48_08905 PF01384 Phosphate transporter family INQ48_08910 PF13609 Gram-negative porin INQ48_08925 PF00886 Ribosomal protein S16 INQ48_08930 PF05239 PRC-barrel domain INQ48_08930 PF01782 RimM N-terminal domain INQ48_08935 PF01746 tRNA (Guanine-1)-methyltransferase INQ48_08940 PF01245 Ribosomal protein L19 INQ48_08945 PF00293 NUDIX domain INQ48_08950 PF17113 Regulatory signalling modulator protein AmpE INQ48_08950 PF03186 CobD/Cbib protein INQ48_08955 PF00155 Aminotransferase class I and II INQ48_08960 PF03193 RsgA GTPase INQ48_08965 PF01329 Pterin 4 alpha carbinolamine dehydratase INQ48_08970 PF01435 Peptidase family M48 INQ48_08975 PF00929 Exonuclease INQ48_08980 PF00271 Helicase conserved C-terminal domain INQ48_08980 PF00270 DEAD/DEAH box helicase INQ48_08990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_08990 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain INQ48_08990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_09000 PF14765 Polyketide synthase dehydratase INQ48_09000 PF00698 Acyl transferase domain INQ48_09000 PF00550 Phosphopantetheine attachment site INQ48_09000 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_09000 PF08659 KR domain INQ48_09000 PF00107 Zinc-binding dehydrogenase INQ48_09000 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_09000 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_09000 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_09020 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_09020 PF00175 Oxidoreductase NAD-binding domain INQ48_09025 PF00355 Rieske [2Fe-2S] domain INQ48_09025 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_09035 PF13193 AMP-binding enzyme C-terminal domain INQ48_09035 PF00501 AMP-binding enzyme INQ48_09040 PF00108 Thiolase, N-terminal domain INQ48_09040 PF02803 Thiolase, C-terminal domain INQ48_09050 PF04199 Putative cyclase INQ48_09060 PF13458 Periplasmic binding protein INQ48_09065 PF13458 Periplasmic binding protein INQ48_09070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_09070 PF00355 Rieske [2Fe-2S] domain INQ48_09085 PF02653 Branched-chain amino acid transport system / permease component INQ48_09095 PF00005 ABC transporter INQ48_09100 PF13193 AMP-binding enzyme C-terminal domain INQ48_09100 PF00501 AMP-binding enzyme INQ48_09105 PF00106 short chain dehydrogenase INQ48_09120 PF00072 Response regulator receiver domain INQ48_09120 PF00196 Bacterial regulatory proteins, luxR family INQ48_09125 PF00512 His Kinase A (phospho-acceptor) domain INQ48_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_09130 PF05199 GMC oxidoreductase INQ48_09185 PF00106 short chain dehydrogenase INQ48_09195 PF07859 alpha/beta hydrolase fold INQ48_09200 PF00478 IMP dehydrogenase / GMP reductase domain INQ48_09205 PF13361 UvrD-like helicase C-terminal domain INQ48_09205 PF00580 UvrD/REP helicase N-terminal domain INQ48_09215 PF01636 Phosphotransferase enzyme family INQ48_09225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain INQ48_09225 PF00476 DNA polymerase family A INQ48_09225 PF01367 5'-3' exonuclease, C-terminal SAM fold INQ48_09225 PF01612 3'-5' exonuclease INQ48_09235 PF07687 Peptidase dimerisation domain INQ48_09235 PF01546 Peptidase family M20/M25/M40 INQ48_09240 PF03466 LysR substrate binding domain INQ48_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_09245 PF01266 FAD dependent oxidoreductase INQ48_09250 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_09260 PF01738 Dienelactone hydrolase family INQ48_09275 PF01425 Amidase INQ48_09280 PF00005 ABC transporter INQ48_09280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_09285 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_09285 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09290 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_09305 PF07969 Amidohydrolase family INQ48_09310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_09310 PF00005 ABC transporter INQ48_09315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_09315 PF00005 ABC transporter INQ48_09320 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09325 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_09335 PF07364 Metallopeptidase family M81 INQ48_09335 PF07171 MlrC C-terminus INQ48_09340 PF01266 FAD dependent oxidoreductase INQ48_09350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_09350 PF00034 Cytochrome c INQ48_09350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_09355 PF01799 [2Fe-2S] binding domain INQ48_09355 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_09360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_09360 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_09360 PF00034 Cytochrome c INQ48_09365 PF13676 TIR domain INQ48_09370 PF00082 Subtilase family INQ48_09375 PF17862 AAA+ lid domain INQ48_09375 PF06480 FtsH Extracellular INQ48_09375 PF01434 Peptidase family M41 INQ48_09375 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_09390 PF01546 Peptidase family M20/M25/M40 INQ48_09390 PF07687 Peptidase dimerisation domain INQ48_09395 PF11737 Protein of unknown function (DUF3300) INQ48_09410 PF00005 ABC transporter INQ48_09420 PF00581 Rhodanese-like domain INQ48_09435 PF02609 Exonuclease VII small subunit INQ48_09440 PF00348 Polyprenyl synthetase INQ48_09445 PF13292 1-deoxy-D-xylulose-5-phosphate synthase INQ48_09445 PF02780 Transketolase, C-terminal domain INQ48_09445 PF02779 Transketolase, pyrimidine binding domain INQ48_09450 PF00005 ABC transporter INQ48_09455 PF00005 ABC transporter INQ48_09455 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_09460 PF11862 Domain of unknown function (DUF3382) INQ48_09460 PF02653 Branched-chain amino acid transport system / permease component INQ48_09465 PF02653 Branched-chain amino acid transport system / permease component INQ48_09470 PF13458 Periplasmic binding protein INQ48_09475 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_09490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_09500 PF12867 DinB superfamily INQ48_09500 PF03781 Sulfatase-modifying factor enzyme 1 INQ48_09510 PF00083 Sugar (and other) transporter INQ48_09515 PF00266 Aminotransferase class-V INQ48_09525 PF00005 ABC transporter INQ48_09540 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase INQ48_09545 PF00171 Aldehyde dehydrogenase family INQ48_09560 PF01266 FAD dependent oxidoreductase INQ48_09570 PF00202 Aminotransferase class-III INQ48_09575 PF03466 LysR substrate binding domain INQ48_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_09580 PF07840 FadR C-terminal domain INQ48_09580 PF00392 Bacterial regulatory proteins, gntR family INQ48_09590 PF02653 Branched-chain amino acid transport system / permease component INQ48_09600 PF00005 ABC transporter INQ48_09605 PF00005 ABC transporter INQ48_09610 PF01546 Peptidase family M20/M25/M40 INQ48_09610 PF07687 Peptidase dimerisation domain INQ48_09615 PF07364 Metallopeptidase family M81 INQ48_09615 PF07171 MlrC C-terminus INQ48_09630 PF01799 [2Fe-2S] binding domain INQ48_09630 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_09635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_09635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_09640 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_09640 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_09645 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_09645 PF05362 Lon protease (S16) C-terminal proteolytic domain INQ48_09645 PF02190 ATP-dependent protease La (LON) substrate-binding domain INQ48_09660 PF02625 XdhC and CoxI family INQ48_09660 PF13478 XdhC Rossmann domain INQ48_09665 PF00005 ABC transporter INQ48_09685 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09700 PF03334 Na+/H+ antiporter subunit INQ48_09705 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) INQ48_09710 PF01899 Na+/H+ ion antiporter subunit INQ48_09715 PF00361 Proton-conducting membrane transporter INQ48_09720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INQ48_09725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INQ48_09725 PF00361 Proton-conducting membrane transporter INQ48_09725 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter INQ48_09725 PF13244 Domain of unknown function (DUF4040) INQ48_09730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) INQ48_09735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_09755 PF18073 Rubredoxin metal binding domain INQ48_09765 PF00216 Bacterial DNA-binding protein INQ48_09770 PF00575 S1 RNA binding domain INQ48_09775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INQ48_09780 PF02153 Prephenate dehydrogenase INQ48_09785 PF00800 Prephenate dehydratase INQ48_09785 PF01842 ACT domain INQ48_09785 PF01817 Chorismate mutase type II INQ48_09790 PF00266 Aminotransferase class-V INQ48_09800 PF03989 DNA gyrase C-terminal domain, beta-propeller INQ48_09800 PF00521 DNA gyrase/topoisomerase IV, subunit A INQ48_09805 PF00691 OmpA family INQ48_09815 PF13419 Haloacid dehalogenase-like hydrolase INQ48_09830 PF10119 Predicted methyltransferase regulatory domain INQ48_09830 PF13847 Methyltransferase domain INQ48_09840 PF00849 RNA pseudouridylate synthase INQ48_09840 PF01479 S4 domain INQ48_09850 PF01522 Polysaccharide deacetylase INQ48_09865 PF00994 Probable molybdopterin binding domain INQ48_09865 PF18146 Damage-inducible protein CinA KH domain INQ48_09865 PF02464 Competence-damaged protein INQ48_09870 PF03951 Glutamine synthetase, beta-Grasp domain INQ48_09870 PF00120 Glutamine synthetase, catalytic domain INQ48_09880 PF00989 PAS fold INQ48_09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_09880 PF00512 His Kinase A (phospho-acceptor) domain INQ48_09885 PF00158 Sigma-54 interaction domain INQ48_09885 PF00072 Response regulator receiver domain INQ48_09885 PF02954 Bacterial regulatory protein, Fis family INQ48_09895 PF03372 Endonuclease/Exonuclease/phosphatase family INQ48_09900 PF08281 Sigma-70, region 4 INQ48_09900 PF04542 Sigma-70 region 2 INQ48_09905 PF16220 Domain of unknown function (DUF4880) INQ48_09905 PF04773 FecR protein INQ48_09910 PF07660 Secretin and TonB N terminus short domain INQ48_09910 PF00593 TonB dependent receptor INQ48_09910 PF07715 TonB-dependent Receptor Plug Domain INQ48_09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_09915 PF03466 LysR substrate binding domain INQ48_09920 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_09950 PF08402 TOBE domain INQ48_09950 PF00005 ABC transporter INQ48_09955 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_09980 PF01425 Amidase INQ48_09990 PF01425 Amidase INQ48_09995 PF03352 Methyladenine glycosylase INQ48_10000 PF02515 CoA-transferase family III INQ48_10005 PF00501 AMP-binding enzyme INQ48_10005 PF13193 AMP-binding enzyme C-terminal domain INQ48_10010 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_10010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_10010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_10015 PF00196 Bacterial regulatory proteins, luxR family INQ48_10015 PF17874 MalT-like TPR region INQ48_10020 PF00106 short chain dehydrogenase INQ48_10025 PF12802 MarR family INQ48_10035 PF00378 Enoyl-CoA hydratase/isomerase INQ48_10040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_10040 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_10040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_10045 PF00501 AMP-binding enzyme INQ48_10045 PF13193 AMP-binding enzyme C-terminal domain INQ48_10050 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10055 PF00378 Enoyl-CoA hydratase/isomerase INQ48_10060 PF02803 Thiolase, C-terminal domain INQ48_10060 PF00108 Thiolase, N-terminal domain INQ48_10070 PF00501 AMP-binding enzyme INQ48_10070 PF13193 AMP-binding enzyme C-terminal domain INQ48_10080 PF01636 Phosphotransferase enzyme family INQ48_10095 PF00115 Cytochrome C and Quinol oxidase polypeptide I INQ48_10100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain INQ48_10100 PF02790 Cytochrome C oxidase subunit II, transmembrane domain INQ48_10100 PF00034 Cytochrome c INQ48_10120 PF03706 Lysylphosphatidylglycerol synthase TM region INQ48_10125 PF04239 Protein of unknown function (DUF421) INQ48_10135 PF01068 ATP dependent DNA ligase domain INQ48_10135 PF13298 DNA polymerase Ligase (LigD) INQ48_10135 PF04679 ATP dependent DNA ligase C terminal region INQ48_10140 PF13609 Gram-negative porin INQ48_10145 PF00107 Zinc-binding dehydrogenase INQ48_10145 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_10150 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10155 PF05853 beta-keto acid cleavage enzyme INQ48_10160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_10185 PF00186 Dihydrofolate reductase INQ48_10190 PF00303 Thymidylate synthase INQ48_10195 PF04542 Sigma-70 region 2 INQ48_10195 PF08281 Sigma-70, region 4 INQ48_10200 PF04773 FecR protein INQ48_10200 PF16220 Domain of unknown function (DUF4880) INQ48_10205 PF07715 TonB-dependent Receptor Plug Domain INQ48_10205 PF00593 TonB dependent receptor INQ48_10210 PF02979 Nitrile hydratase, alpha chain INQ48_10215 PF02211 Nitrile hydratase beta subunit INQ48_10225 PF02913 FAD linked oxidases, C-terminal domain INQ48_10225 PF01565 FAD binding domain INQ48_10235 PF03631 Virulence factor BrkB INQ48_10245 PF00085 Thioredoxin INQ48_10255 PF08386 TAP-like protein INQ48_10255 PF00561 alpha/beta hydrolase fold INQ48_10260 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_10270 PF00005 ABC transporter INQ48_10280 PF02653 Branched-chain amino acid transport system / permease component INQ48_10285 PF13407 Periplasmic binding protein domain INQ48_10290 PF02653 Branched-chain amino acid transport system / permease component INQ48_10295 PF00501 AMP-binding enzyme INQ48_10295 PF13193 AMP-binding enzyme C-terminal domain INQ48_10300 PF01757 Acyltransferase family INQ48_10305 PF00905 Penicillin binding protein transpeptidase domain INQ48_10315 PF08279 HTH domain INQ48_10315 PF13280 WYL domain INQ48_10320 PF13091 PLD-like domain INQ48_10330 PF00962 Adenosine/AMP deaminase INQ48_10335 PF03466 LysR substrate binding domain INQ48_10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_10420 PF04055 Radical SAM superfamily INQ48_10425 PF02321 Outer membrane efflux protein INQ48_10430 PF00529 HlyD membrane-fusion protein of T1SS INQ48_10430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_10435 PF00873 AcrB/AcrD/AcrF family INQ48_10450 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INQ48_10450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_10465 PF00476 DNA polymerase family A INQ48_10465 PF01612 3'-5' exonuclease INQ48_10475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_10485 PF00756 Putative esterase INQ48_10490 PF00561 alpha/beta hydrolase fold INQ48_10495 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_10495 PF00107 Zinc-binding dehydrogenase INQ48_10500 PF02798 Glutathione S-transferase, N-terminal domain INQ48_10510 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_10510 PF00355 Rieske [2Fe-2S] domain INQ48_10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_10515 PF03466 LysR substrate binding domain INQ48_10520 PF01220 Dehydroquinase class II INQ48_10525 PF04293 SpoVR like protein INQ48_10530 PF04285 Protein of unknown function (DUF444) INQ48_10535 PF08298 PrkA AAA domain INQ48_10535 PF06798 PrkA serine protein kinase C-terminal domain INQ48_10540 PF00684 DnaJ central domain INQ48_10540 PF00226 DnaJ domain INQ48_10540 PF01556 DnaJ C terminal domain INQ48_10545 PF00012 Hsp70 protein INQ48_10550 PF01025 GrpE INQ48_10555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_10565 PF02666 Phosphatidylserine decarboxylase INQ48_10570 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10575 PF10282 Lactonase, 7-bladed beta-propeller INQ48_10580 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10595 PF08666 SAF domain INQ48_10595 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus INQ48_10600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_10605 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_10610 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_10615 PF08450 SMP-30/Gluconolactonase/LRE-like region INQ48_10620 PF01370 NAD dependent epimerase/dehydratase family INQ48_10625 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_10630 PF00005 ABC transporter INQ48_10635 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_10640 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_10645 PF00392 Bacterial regulatory proteins, gntR family INQ48_10645 PF07729 FCD domain INQ48_10650 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10655 PF00701 Dihydrodipicolinate synthetase family INQ48_10665 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10670 PF13378 Enolase C-terminal domain-like INQ48_10670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain INQ48_10675 PF00171 Aldehyde dehydrogenase family INQ48_10690 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_10700 PF07690 Major Facilitator Superfamily INQ48_10705 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_10715 PF03466 LysR substrate binding domain INQ48_10740 PF00005 ABC transporter INQ48_10745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_10750 PF00440 Bacterial regulatory proteins, tetR family INQ48_10755 PF13396 Phospholipase_D-nuclease N-terminal INQ48_10755 PF13091 PLD-like domain INQ48_10765 PF01717 Cobalamin-independent synthase, Catalytic domain INQ48_10770 PF00355 Rieske [2Fe-2S] domain INQ48_10775 PF00392 Bacterial regulatory proteins, gntR family INQ48_10775 PF07729 FCD domain INQ48_10780 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_10780 PF00970 Oxidoreductase FAD-binding domain INQ48_10785 PF13458 Periplasmic binding protein INQ48_10800 PF00005 ABC transporter INQ48_10800 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_10805 PF00005 ABC transporter INQ48_10810 PF07519 Tannase and feruloyl esterase INQ48_10825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_10825 PF03466 LysR substrate binding domain INQ48_10830 PF00682 HMGL-like INQ48_10835 PF02515 CoA-transferase family III INQ48_10840 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_10850 PF07690 Major Facilitator Superfamily INQ48_10855 PF04539 Sigma-70 region 3 INQ48_10855 PF04542 Sigma-70 region 2 INQ48_10855 PF00140 Sigma-70 factor, region 1.2 INQ48_10855 PF04545 Sigma-70, region 4 INQ48_10855 PF03979 Sigma-70 factor, region 1.1 INQ48_10855 PF04546 Sigma-70, non-essential region INQ48_10860 PF08275 DNA primase catalytic core, N-terminal domain INQ48_10860 PF01807 CHC2 zinc finger INQ48_10860 PF08278 DNA primase DnaG DnaB-binding INQ48_10860 PF10410 DnaB-helicase binding domain of primase INQ48_10860 PF13662 Toprim domain INQ48_10865 PF03631 Virulence factor BrkB INQ48_10870 PF00106 short chain dehydrogenase INQ48_10875 PF09361 Phasin protein INQ48_10880 PF03061 Thioesterase superfamily INQ48_10890 PF05532 CsbD-like INQ48_10895 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family INQ48_10895 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain INQ48_10905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_10905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_10910 PF02646 RmuC family INQ48_10920 PF07690 Major Facilitator Superfamily INQ48_10930 PF00440 Bacterial regulatory proteins, tetR family INQ48_10935 PF03641 Possible lysine decarboxylase INQ48_10940 PF08207 Elongation factor P (EF-P) KOW-like domain INQ48_10940 PF01132 Elongation factor P (EF-P) OB domain INQ48_10940 PF09285 Elongation factor P, C-terminal INQ48_10960 PF01541 GIY-YIG catalytic domain INQ48_10960 PF02151 UvrB/uvrC motif INQ48_10960 PF08459 UvrC Helix-hairpin-helix N-terminal INQ48_10965 PF01066 CDP-alcohol phosphatidyltransferase INQ48_10970 PF00892 EamA-like transporter family INQ48_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_10975 PF03466 LysR substrate binding domain INQ48_10980 PF00561 alpha/beta hydrolase fold INQ48_10985 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_10990 PF00216 Bacterial DNA-binding protein INQ48_11020 PF01161 Phosphatidylethanolamine-binding protein INQ48_11035 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_11035 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_11035 PF08659 KR domain INQ48_11035 PF00107 Zinc-binding dehydrogenase INQ48_11035 PF00550 Phosphopantetheine attachment site INQ48_11035 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_11035 PF14765 Polyketide synthase dehydratase INQ48_11035 PF00698 Acyl transferase domain INQ48_11035 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_11040 PF01975 Survival protein SurE INQ48_11050 PF01476 LysM domain INQ48_11050 PF01551 Peptidase family M23 INQ48_11055 PF04545 Sigma-70, region 4 INQ48_11055 PF04542 Sigma-70 region 2 INQ48_11055 PF00140 Sigma-70 factor, region 1.2 INQ48_11055 PF04539 Sigma-70 region 3 INQ48_11060 PF05958 tRNA (Uracil-5-)-methyltransferase INQ48_11065 PF01027 Inhibitor of apoptosis-promoting Bax1 INQ48_11070 PF03928 Haem-degrading INQ48_11080 PF02472 Biopolymer transport protein ExbD/TolR INQ48_11085 PF01618 MotA/TolQ/ExbB proton channel family INQ48_11100 PF13640 2OG-Fe(II) oxygenase superfamily INQ48_11100 PF18331 PKHD-type hydroxylase C-terminal domain INQ48_11105 PF00593 TonB dependent receptor INQ48_11105 PF07715 TonB-dependent Receptor Plug Domain INQ48_11110 PF00667 FAD binding domain INQ48_11110 PF00175 Oxidoreductase NAD-binding domain INQ48_11110 PF00258 Flavodoxin INQ48_11115 PF02424 ApbE family INQ48_11135 PF00210 Ferritin-like domain INQ48_11140 PF00578 AhpC/TSA family INQ48_11140 PF10417 C-terminal domain of 1-Cys peroxiredoxin INQ48_11145 PF13192 Thioredoxin domain INQ48_11145 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_11150 PF00593 TonB dependent receptor INQ48_11150 PF07715 TonB-dependent Receptor Plug Domain INQ48_11165 PF01032 FecCD transport family INQ48_11170 PF00005 ABC transporter INQ48_11175 PF03618 Kinase/pyrophosphorylase INQ48_11180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain INQ48_11180 PF02896 PEP-utilising enzyme, TIM barrel domain INQ48_11180 PF00391 PEP-utilising enzyme, mobile domain INQ48_11190 PF01250 Ribosomal protein S6 INQ48_11200 PF01084 Ribosomal protein S18 INQ48_11205 PF01281 Ribosomal protein L9, N-terminal domain INQ48_11205 PF03948 Ribosomal protein L9, C-terminal domain INQ48_11210 PF00772 DnaB-like helicase N terminal domain INQ48_11210 PF03796 DnaB-like helicase C terminal domain INQ48_11225 PF01878 EVE domain INQ48_11235 PF13638 PIN domain INQ48_11235 PF02562 PhoH-like protein INQ48_11240 PF00578 AhpC/TSA family INQ48_11250 PF00155 Aminotransferase class I and II INQ48_11260 PF03447 Homoserine dehydrogenase, NAD binding domain INQ48_11260 PF00742 Homoserine dehydrogenase INQ48_11260 PF01842 ACT domain INQ48_11265 PF14821 Threonine synthase N terminus INQ48_11265 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_11270 PF03205 Molybdopterin guanine dinucleotide synthesis protein B INQ48_11275 PF00994 Probable molybdopterin binding domain INQ48_11275 PF03454 MoeA C-terminal region (domain IV) INQ48_11275 PF03453 MoeA N-terminal region (domain I and II) INQ48_11285 PF00701 Dihydrodipicolinate synthetase family INQ48_11290 PF02391 MoaE protein INQ48_11295 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_11300 PF17871 AAA lid domain INQ48_11300 PF07724 AAA domain (Cdc48 subfamily) INQ48_11300 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_11300 PF02861 Clp amino terminal domain, pathogenicity island component INQ48_11300 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_11310 PF00501 AMP-binding enzyme INQ48_11315 PF00005 ABC transporter INQ48_11335 PF00005 ABC transporter INQ48_11335 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_11340 PF00440 Bacterial regulatory proteins, tetR family INQ48_11340 PF16925 Tetracyclin repressor-like, C-terminal domain INQ48_11345 PF00378 Enoyl-CoA hydratase/isomerase INQ48_11350 PF02803 Thiolase, C-terminal domain INQ48_11350 PF00108 Thiolase, N-terminal domain INQ48_11355 PF00472 RF-1 domain INQ48_11370 PF03466 LysR substrate binding domain INQ48_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_11375 PF01740 STAS domain INQ48_11375 PF00916 Sulfate permease family INQ48_11390 PF03466 LysR substrate binding domain INQ48_11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_11395 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_11395 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_11400 PF00550 Phosphopantetheine attachment site INQ48_11415 PF07690 Major Facilitator Superfamily INQ48_11425 PF00005 ABC transporter INQ48_11430 PF03960 ArsC family INQ48_11440 PF00885 6,7-dimethyl-8-ribityllumazine synthase INQ48_11445 PF06224 Winged helix DNA-binding domain INQ48_11460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INQ48_11460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INQ48_11470 PF00005 ABC transporter INQ48_11475 PF09084 NMT1/THI5 like INQ48_11480 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_11485 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_11490 PF17938 Tetracyclin repressor-like, C-terminal domain INQ48_11490 PF00440 Bacterial regulatory proteins, tetR family INQ48_11495 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_11495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_11495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_11505 PF12833 Helix-turn-helix domain INQ48_11525 PF00463 Isocitrate lyase family INQ48_11530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INQ48_11530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INQ48_11530 PF03129 Anticodon binding domain INQ48_11530 PF02824 TGS domain INQ48_11535 PF05198 Translation initiation factor IF-3, N-terminal domain INQ48_11535 PF00707 Translation initiation factor IF-3, C-terminal domain INQ48_11540 PF01632 Ribosomal protein L35 INQ48_11545 PF00453 Ribosomal protein L20 INQ48_11550 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain INQ48_11550 PF01409 tRNA synthetases class II core domain (F) INQ48_11555 PF01588 Putative tRNA binding domain INQ48_11555 PF03147 Ferredoxin-fold anticodon binding domain INQ48_11555 PF03484 tRNA synthetase B5 domain INQ48_11555 PF03483 B3/4 domain INQ48_11555 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain INQ48_11560 PF00216 Bacterial DNA-binding protein INQ48_11595 PF04235 Protein of unknown function (DUF418) INQ48_11600 PF13091 PLD-like domain INQ48_11605 PF01551 Peptidase family M23 INQ48_11605 PF01476 LysM domain INQ48_11610 PF05981 CreA protein INQ48_11620 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_11630 PF13417 Glutathione S-transferase, N-terminal domain INQ48_11635 PF02578 Multi-copper polyphenol oxidoreductase laccase INQ48_11645 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus INQ48_11650 PF00108 Thiolase, N-terminal domain INQ48_11650 PF02803 Thiolase, C-terminal domain INQ48_11660 PF02798 Glutathione S-transferase, N-terminal domain INQ48_11665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_11665 PF03466 LysR substrate binding domain INQ48_11670 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_11680 PF02515 CoA-transferase family III INQ48_11685 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_11690 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_11695 PF02464 Competence-damaged protein INQ48_11695 PF00994 Probable molybdopterin binding domain INQ48_11695 PF18146 Damage-inducible protein CinA KH domain INQ48_11700 PF00106 short chain dehydrogenase INQ48_11705 PF02254 TrkA-N domain INQ48_11705 PF00999 Sodium/hydrogen exchanger family INQ48_11720 PF00593 TonB dependent receptor INQ48_11720 PF07715 TonB-dependent Receptor Plug Domain INQ48_11735 PF02492 CobW/HypB/UreG, nucleotide-binding domain INQ48_11735 PF07683 Cobalamin synthesis protein cobW C-terminal domain INQ48_11740 PF02514 CobN/Magnesium Chelatase INQ48_11745 PF17863 AAA lid domain INQ48_11745 PF07728 AAA domain (dynein-related subfamily) INQ48_11745 PF13519 von Willebrand factor type A domain INQ48_11755 PF01406 tRNA synthetases class I (C) catalytic domain INQ48_11765 PF01497 Periplasmic binding protein INQ48_11780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) INQ48_11810 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_11825 PF02082 Transcriptional regulator INQ48_11830 PF06505 Activator of aromatic catabolism INQ48_11830 PF02830 V4R domain INQ48_11830 PF00158 Sigma-54 interaction domain INQ48_11830 PF02954 Bacterial regulatory protein, Fis family INQ48_11835 PF06099 Phenol hydroxylase subunit INQ48_11840 PF02332 Methane/Phenol/Toluene Hydroxylase INQ48_11850 PF02332 Methane/Phenol/Toluene Hydroxylase INQ48_11850 PF04945 YHS domain INQ48_11855 PF04663 Phenol hydroxylase conserved region INQ48_11860 PF00175 Oxidoreductase NAD-binding domain INQ48_11860 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_11860 PF00970 Oxidoreductase FAD-binding domain INQ48_11865 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_11870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_11875 PF00561 alpha/beta hydrolase fold INQ48_11885 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation INQ48_11885 PF01118 Semialdehyde dehydrogenase, NAD binding domain INQ48_11890 PF07836 DmpG-like communication domain INQ48_11890 PF00682 HMGL-like INQ48_11905 PF12146 Serine aminopeptidase, S33 INQ48_11920 PF00106 short chain dehydrogenase INQ48_11925 PF12833 Helix-turn-helix domain INQ48_11925 PF01965 DJ-1/PfpI family INQ48_11935 PF02525 Flavodoxin-like fold INQ48_11940 PF00893 Small Multidrug Resistance protein INQ48_11945 PF01638 HxlR-like helix-turn-helix INQ48_11950 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_11955 PF00561 alpha/beta hydrolase fold INQ48_11960 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_11960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_11960 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_11970 PF13932 GidA associated domain INQ48_11970 PF01134 Glucose inhibited division protein A INQ48_11975 PF01425 Amidase INQ48_11995 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_12020 PF00355 Rieske [2Fe-2S] domain INQ48_12020 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_12025 PF00881 Nitroreductase family INQ48_12040 PF03466 LysR substrate binding domain INQ48_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_12045 PF03466 LysR substrate binding domain INQ48_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_12060 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_12070 PF02525 Flavodoxin-like fold INQ48_12075 PF03466 LysR substrate binding domain INQ48_12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_12110 PF10946 Protein of unknown function DUF2625 INQ48_12130 PF07690 Major Facilitator Superfamily INQ48_12155 PF03143 Elongation factor Tu C-terminal domain INQ48_12155 PF03144 Elongation factor Tu domain 2 INQ48_12155 PF00009 Elongation factor Tu GTP binding domain INQ48_12175 PF00958 GMP synthase C terminal domain INQ48_12175 PF00117 Glutamine amidotransferase class-I INQ48_12175 PF03352 Methyladenine glycosylase INQ48_12175 PF13302 Acetyltransferase (GNAT) domain INQ48_12175 PF13673 Acetyltransferase (GNAT) domain INQ48_12185 PF01638 HxlR-like helix-turn-helix INQ48_12210 PF00929 Exonuclease INQ48_12230 PF00135 Carboxylesterase family INQ48_12235 PF01037 Lrp/AsnC ligand binding domain INQ48_12240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_12240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_12240 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_12250 PF00440 Bacterial regulatory proteins, tetR family INQ48_12265 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_12270 PF01425 Amidase INQ48_12275 PF00083 Sugar (and other) transporter INQ48_12275 PF07690 Major Facilitator Superfamily INQ48_12290 PF00376 MerR family regulatory protein INQ48_12290 PF09278 MerR, DNA binding INQ48_12300 PF01207 Dihydrouridine synthase (Dus) INQ48_12305 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_12310 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_12315 PF09339 IclR helix-turn-helix domain INQ48_12320 PF00392 Bacterial regulatory proteins, gntR family INQ48_12320 PF07729 FCD domain INQ48_12325 PF01642 Methylmalonyl-CoA mutase INQ48_12325 PF02310 B12 binding domain INQ48_12345 PF01039 Carboxyl transferase domain INQ48_12350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_12350 PF02785 Biotin carboxylase C-terminal domain INQ48_12350 PF18140 Propionyl-coenzyme A carboxylase BT domain INQ48_12350 PF00364 Biotin-requiring enzyme INQ48_12350 PF00289 Biotin carboxylase, N-terminal domain INQ48_12355 PF06968 Biotin and Thiamin Synthesis associated domain INQ48_12355 PF04055 Radical SAM superfamily INQ48_12365 PF01037 Lrp/AsnC ligand binding domain INQ48_12370 PF00892 EamA-like transporter family INQ48_12380 PF04060 Putative Fe-S cluster INQ48_12390 PF00155 Aminotransferase class I and II INQ48_12395 PF02151 UvrB/uvrC motif INQ48_12395 PF00271 Helicase conserved C-terminal domain INQ48_12395 PF12344 Ultra-violet resistance protein B INQ48_12395 PF04851 Type III restriction enzyme, res subunit INQ48_12395 PF17757 UvrB interaction domain INQ48_12400 PF02082 Transcriptional regulator INQ48_12405 PF00266 Aminotransferase class-V INQ48_12410 PF01592 NifU-like N terminal domain INQ48_12415 PF01521 Iron-sulphur cluster biosynthesis INQ48_12420 PF07743 HSCB C-terminal oligomerisation domain INQ48_12425 PF00012 Hsp70 protein INQ48_12430 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_12435 PF00929 Exonuclease INQ48_12450 PF01266 FAD dependent oxidoreductase INQ48_12465 PF01180 Dihydroorotate dehydrogenase INQ48_12470 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) INQ48_12480 PF01432 Peptidase family M3 INQ48_12485 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain INQ48_12485 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain INQ48_12490 PF00072 Response regulator receiver domain INQ48_12490 PF00196 Bacterial regulatory proteins, luxR family INQ48_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_12495 PF00512 His Kinase A (phospho-acceptor) domain INQ48_12495 PF00989 PAS fold INQ48_12500 PF17831 Pyruvate dehydrogenase E1 component middle domain INQ48_12500 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_12510 PF00227 Proteasome subunit INQ48_12515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INQ48_12515 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_12520 PF00877 NlpC/P60 family INQ48_12525 PF07995 Glucose / Sorbosone dehydrogenase INQ48_12535 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal INQ48_12535 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal INQ48_12550 PF16177 Acetyl-coenzyme A synthetase N-terminus INQ48_12550 PF13193 AMP-binding enzyme C-terminal domain INQ48_12550 PF00501 AMP-binding enzyme INQ48_12555 PF02779 Transketolase, pyrimidine binding domain INQ48_12555 PF00676 Dehydrogenase E1 component INQ48_12555 PF16870 2-oxoglutarate dehydrogenase C-terminal INQ48_12555 PF16078 2-oxoglutarate dehydrogenase N-terminus INQ48_12560 PF02817 e3 binding domain INQ48_12560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) INQ48_12560 PF00364 Biotin-requiring enzyme INQ48_12565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INQ48_12565 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_12570 PF03969 AFG1-like ATPase INQ48_12590 PF04851 Type III restriction enzyme, res subunit INQ48_12590 PF13307 Helicase C-terminal domain INQ48_12595 PF13525 Outer membrane lipoprotein INQ48_12600 PF01479 S4 domain INQ48_12600 PF00849 RNA pseudouridylate synthase INQ48_12605 PF04079 Segregation and condensation complex subunit ScpB INQ48_12610 PF00849 RNA pseudouridylate synthase INQ48_12610 PF01479 S4 domain INQ48_12615 PF00334 Nucleoside diphosphate kinase INQ48_12620 PF04055 Radical SAM superfamily INQ48_12635 PF04551 GcpE protein INQ48_12640 PF13393 Histidyl-tRNA synthetase INQ48_12640 PF03129 Anticodon binding domain INQ48_12650 PF13360 PQQ-like domain INQ48_12655 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal INQ48_12655 PF01926 50S ribosome-binding GTPase INQ48_12660 PF17209 Hfq protein INQ48_12665 PF01926 50S ribosome-binding GTPase INQ48_12665 PF13167 GTP-binding GTPase N-terminal INQ48_12665 PF16360 GTP-binding GTPase Middle Region INQ48_12670 PF12221 Bacterial membrane protein N terminal INQ48_12670 PF01145 SPFH domain / Band 7 family INQ48_12675 PF01145 SPFH domain / Band 7 family INQ48_12685 PF13393 Histidyl-tRNA synthetase INQ48_12690 PF00709 Adenylosuccinate synthetase INQ48_12720 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_12730 PF13472 GDSL-like Lipase/Acylhydrolase family INQ48_12735 PF00005 ABC transporter INQ48_12740 PF00542 Ribosomal protein L7/L12 C-terminal domain INQ48_12740 PF16320 Ribosomal protein L7/L12 dimerisation domain INQ48_12750 PF08032 RNA 2'-O ribose methyltransferase substrate binding INQ48_12750 PF00588 SpoU rRNA Methylase family INQ48_12775 PF00248 Aldo/keto reductase family INQ48_12780 PF02417 Chromate transporter INQ48_12810 PF06314 Acetoacetate decarboxylase (ADC) INQ48_12820 PF00583 Acetyltransferase (GNAT) family INQ48_12820 PF01047 MarR family INQ48_12825 PF04055 Radical SAM superfamily INQ48_12825 PF11842 Domain of unknown function (DUF3362) INQ48_12825 PF08497 Radical SAM N-terminal INQ48_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_12860 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_12865 PF02515 CoA-transferase family III INQ48_12875 PF01037 Lrp/AsnC ligand binding domain INQ48_12895 PF00378 Enoyl-CoA hydratase/isomerase INQ48_12905 PF01168 Alanine racemase, N-terminal domain INQ48_12905 PF14031 Putative serine dehydratase domain INQ48_12910 PF03466 LysR substrate binding domain INQ48_12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_12925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_12930 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_12935 PF00581 Rhodanese-like domain INQ48_12965 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_12970 PF00005 ABC transporter INQ48_12985 PF02803 Thiolase, C-terminal domain INQ48_12985 PF00108 Thiolase, N-terminal domain INQ48_12990 PF13193 AMP-binding enzyme C-terminal domain INQ48_12990 PF00501 AMP-binding enzyme INQ48_12995 PF02632 BioY family INQ48_13010 PF00128 Alpha amylase, catalytic domain INQ48_13010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INQ48_13035 PF00593 TonB dependent receptor INQ48_13035 PF07715 TonB-dependent Receptor Plug Domain INQ48_13055 PF00043 Glutathione S-transferase, C-terminal domain INQ48_13055 PF02798 Glutathione S-transferase, N-terminal domain INQ48_13065 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_13065 PF13192 Thioredoxin domain INQ48_13075 PF17941 Polyphosphate kinase C-terminal domain 1 INQ48_13075 PF02503 Polyphosphate kinase middle domain INQ48_13075 PF13089 Polyphosphate kinase N-terminal domain INQ48_13075 PF13090 Polyphosphate kinase C-terminal domain 2 INQ48_13085 PF02541 Ppx/GppA phosphatase family INQ48_13090 PF12849 PBP superfamily domain INQ48_13095 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_13100 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_13105 PF00005 ABC transporter INQ48_13110 PF01895 PhoU domain INQ48_13115 PF00486 Transcriptional regulatory protein, C terminal INQ48_13115 PF00072 Response regulator receiver domain INQ48_13120 PF11808 Phosphate regulon sensor protein PhoR INQ48_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_13120 PF00512 His Kinase A (phospho-acceptor) domain INQ48_13120 PF00989 PAS fold INQ48_13125 PF01554 MatE INQ48_13135 PF01197 Ribosomal protein L31 INQ48_13140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INQ48_13140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INQ48_13145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INQ48_13145 PF07498 Rho termination factor, N-terminal domain INQ48_13145 PF07497 Rho termination factor, RNA-binding domain INQ48_13150 PF00085 Thioredoxin INQ48_13160 PF12705 PD-(D/E)XK nuclease superfamily INQ48_13160 PF00580 UvrD/REP helicase N-terminal domain INQ48_13160 PF13361 UvrD-like helicase C-terminal domain INQ48_13175 PF12169 DNA polymerase III subunits gamma and tau domain III INQ48_13175 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding INQ48_13175 PF12170 DNA polymerase III tau subunit V interacting with alpha INQ48_13180 PF02575 YbaB/EbfC DNA-binding family INQ48_13185 PF02132 RecR protein INQ48_13185 PF13662 Toprim domain INQ48_13200 PF00005 ABC transporter INQ48_13205 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_13210 PF02254 TrkA-N domain INQ48_13210 PF00999 Sodium/hydrogen exchanger family INQ48_13215 PF01476 LysM domain INQ48_13215 PF01464 Transglycosylase SLT domain INQ48_13220 PF00753 Metallo-beta-lactamase superfamily INQ48_13220 PF16123 Hydroxyacylglutathione hydrolase C-terminus INQ48_13230 PF00075 RNase H INQ48_13245 PF01425 Amidase INQ48_13250 PF01425 Amidase INQ48_13260 PF02653 Branched-chain amino acid transport system / permease component INQ48_13270 PF00005 ABC transporter INQ48_13275 PF00005 ABC transporter INQ48_13285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_13285 PF03466 LysR substrate binding domain INQ48_13290 PF02515 CoA-transferase family III INQ48_13300 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_13305 PF03453 MoeA N-terminal region (domain I and II) INQ48_13305 PF00994 Probable molybdopterin binding domain INQ48_13305 PF03454 MoeA C-terminal region (domain IV) INQ48_13310 PF06463 Molybdenum Cofactor Synthesis C INQ48_13310 PF04055 Radical SAM superfamily INQ48_13320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain INQ48_13320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain INQ48_13325 PF02535 ZIP Zinc transporter INQ48_13330 PF00171 Aldehyde dehydrogenase family INQ48_13340 PF13091 PLD-like domain INQ48_13400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_13410 PF03030 Inorganic H+ pyrophosphatase INQ48_13415 PF00719 Inorganic pyrophosphatase INQ48_13435 PF02540 NAD synthase INQ48_13435 PF00795 Carbon-nitrogen hydrolase INQ48_13440 PF00543 Nitrogen regulatory protein P-II INQ48_13445 PF03641 Possible lysine decarboxylase INQ48_13450 PF01219 Prokaryotic diacylglycerol kinase INQ48_13475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_13475 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_13475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_13480 PF10369 Small subunit of acetolactate synthase INQ48_13485 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain INQ48_13485 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain INQ48_13490 PF01066 CDP-alcohol phosphatidyltransferase INQ48_13495 PF00682 HMGL-like INQ48_13495 PF08502 LeuA allosteric (dimerisation) domain INQ48_13500 PF08502 LeuA allosteric (dimerisation) domain INQ48_13500 PF00682 HMGL-like INQ48_13505 PF00768 D-alanyl-D-alanine carboxypeptidase INQ48_13515 PF04376 Arginine-tRNA-protein transferase, N terminus INQ48_13515 PF04377 Arginine-tRNA-protein transferase, C terminus INQ48_13520 PF03588 Leucyl/phenylalanyl-tRNA protein transferase INQ48_13525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_13525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_13530 PF12833 Helix-turn-helix domain INQ48_13540 PF01494 FAD binding domain INQ48_13545 PF09339 IclR helix-turn-helix domain INQ48_13545 PF01614 Bacterial transcriptional regulator INQ48_13550 PF00486 Transcriptional regulatory protein, C terminal INQ48_13550 PF00072 Response regulator receiver domain INQ48_13555 PF00512 His Kinase A (phospho-acceptor) domain INQ48_13555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_13560 PF17820 PDZ domain INQ48_13560 PF13180 PDZ domain INQ48_13575 PF00072 Response regulator receiver domain INQ48_13575 PF00196 Bacterial regulatory proteins, luxR family INQ48_13580 PF13280 WYL domain INQ48_13635 PF00226 DnaJ domain INQ48_13635 PF01556 DnaJ C terminal domain INQ48_13635 PF00684 DnaJ central domain INQ48_13780 PF07963 Prokaryotic N-terminal methylation motif INQ48_13780 PF00114 Pilin (bacterial filament) INQ48_13785 PF01381 Helix-turn-helix INQ48_13855 PF05866 Endodeoxyribonuclease RusA INQ48_13875 PF01726 LexA DNA binding domain INQ48_13875 PF00717 Peptidase S24-like INQ48_14055 PF00565 Staphylococcal nuclease homologue INQ48_14100 PF07715 TonB-dependent Receptor Plug Domain INQ48_14100 PF00593 TonB dependent receptor INQ48_14105 PF02581 Thiamine monophosphate synthase INQ48_14110 PF05690 Thiazole biosynthesis protein ThiG INQ48_14120 PF01266 FAD dependent oxidoreductase INQ48_14125 PF08543 Phosphomethylpyrimidine kinase INQ48_14135 PF00672 HAMP domain INQ48_14135 PF00211 Adenylate and Guanylate cyclase catalytic domain INQ48_14135 PF02743 Cache domain INQ48_14140 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_14140 PF00175 Oxidoreductase NAD-binding domain INQ48_14145 PF00355 Rieske [2Fe-2S] domain INQ48_14150 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_14155 PF03466 LysR substrate binding domain INQ48_14165 PF00202 Aminotransferase class-III INQ48_14170 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_14175 PF00037 4Fe-4S binding domain INQ48_14175 PF11953 Domain of unknown function (DUF3470) INQ48_14180 PF00009 Elongation factor Tu GTP binding domain INQ48_14185 PF01507 Phosphoadenosine phosphosulfate reductase family INQ48_14190 PF01507 Phosphoadenosine phosphosulfate reductase family INQ48_14210 PF03576 Peptidase family S58 INQ48_14215 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14215 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_14220 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_14230 PF00005 ABC transporter INQ48_14230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_14235 PF01112 Asparaginase INQ48_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_14245 PF03466 LysR substrate binding domain INQ48_14250 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_14255 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_14265 PF00691 OmpA family INQ48_14265 PF04972 BON domain INQ48_14270 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_14275 PF01546 Peptidase family M20/M25/M40 INQ48_14275 PF07687 Peptidase dimerisation domain INQ48_14280 PF01037 Lrp/AsnC ligand binding domain INQ48_14290 PF00248 Aldo/keto reductase family INQ48_14295 PF03466 LysR substrate binding domain INQ48_14295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_14305 PF01266 FAD dependent oxidoreductase INQ48_14310 PF00274 Fructose-bisphosphate aldolase class-I INQ48_14315 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain INQ48_14315 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain INQ48_14325 PF01625 Peptide methionine sulfoxide reductase INQ48_14335 PF00174 Oxidoreductase molybdopterin binding domain INQ48_14340 PF01292 Prokaryotic cytochrome b561 INQ48_14345 PF00072 Response regulator receiver domain INQ48_14345 PF00486 Transcriptional regulatory protein, C terminal INQ48_14350 PF00512 His Kinase A (phospho-acceptor) domain INQ48_14350 PF00672 HAMP domain INQ48_14350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_14350 PF18698 Histidine kinase sensor domain INQ48_14350 PF00989 PAS fold INQ48_14355 PF00378 Enoyl-CoA hydratase/isomerase INQ48_14380 PF04362 Bacterial Fe(2+) trafficking INQ48_14390 PF03358 NADPH-dependent FMN reductase INQ48_14395 PF09084 NMT1/THI5 like INQ48_14400 PF09084 NMT1/THI5 like INQ48_14405 PF00296 Luciferase-like monooxygenase INQ48_14410 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14415 PF09084 NMT1/THI5 like INQ48_14420 PF00005 ABC transporter INQ48_14425 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_14430 PF00881 Nitroreductase family INQ48_14435 PF03459 TOBE domain INQ48_14450 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_14465 PF00266 Aminotransferase class-V INQ48_14480 PF04820 Tryptophan halogenase INQ48_14485 PF07804 HipA-like C-terminal domain INQ48_14490 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_14490 PF02558 Ketopantoate reductase PanE/ApbA INQ48_14505 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_14510 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14515 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14520 PF03358 NADPH-dependent FMN reductase INQ48_14545 PF02525 Flavodoxin-like fold INQ48_14550 PF03466 LysR substrate binding domain INQ48_14550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_14555 PF00578 AhpC/TSA family INQ48_14555 PF10417 C-terminal domain of 1-Cys peroxiredoxin INQ48_14570 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14575 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_14580 PF12857 TOBE-like domain INQ48_14580 PF00005 ABC transporter INQ48_14580 PF17850 CysA C-terminal regulatory domain INQ48_14585 PF02600 Disulfide bond formation protein DsbB INQ48_14590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_14595 PF00005 ABC transporter INQ48_14595 PF12704 MacB-like periplasmic core domain INQ48_14595 PF02687 FtsX-like permease family INQ48_14600 PF02321 Outer membrane efflux protein INQ48_14620 PF01709 Transcriptional regulator INQ48_14625 PF02844 Phosphoribosylglycinamide synthetase, N domain INQ48_14625 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain INQ48_14625 PF02843 Phosphoribosylglycinamide synthetase, C domain INQ48_14630 PF01218 Coproporphyrinogen III oxidase INQ48_14635 PF01467 Cytidylyltransferase-like INQ48_14645 PF02590 Predicted SPOUT methyltransferase INQ48_14650 PF02545 Maf-like protein INQ48_14655 PF00575 S1 RNA binding domain INQ48_14655 PF10150 Ribonuclease E/G family INQ48_14660 PF07690 Major Facilitator Superfamily INQ48_14665 PF05853 beta-keto acid cleavage enzyme INQ48_14675 PF07729 FCD domain INQ48_14675 PF00392 Bacterial regulatory proteins, gntR family INQ48_14680 PF00005 ABC transporter INQ48_14680 PF00664 ABC transporter transmembrane region INQ48_14685 PF07676 WD40-like Beta Propeller Repeat INQ48_14685 PF04052 TolB amino-terminal domain INQ48_14690 PF00691 OmpA family INQ48_14700 PF00899 ThiF family INQ48_14740 PF14525 AraC-binding-like domain INQ48_14740 PF12833 Helix-turn-helix domain INQ48_14750 PF01738 Dienelactone hydrolase family INQ48_14755 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_14755 PF00175 Oxidoreductase NAD-binding domain INQ48_14760 PF00355 Rieske [2Fe-2S] domain INQ48_14760 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_14765 PF00866 Ring hydroxylating beta subunit INQ48_14795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal INQ48_14795 PF00460 Flagella basal body rod protein INQ48_14800 PF10135 Rod binding protein INQ48_14800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase INQ48_14805 PF02119 Flagellar P-ring protein INQ48_14810 PF02107 Flagellar L-ring protein INQ48_14815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal INQ48_14815 PF00460 Flagella basal body rod protein INQ48_14820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal INQ48_14820 PF00460 Flagella basal body rod protein INQ48_14825 PF07559 Flagellar basal body protein FlaE INQ48_14825 PF00460 Flagella basal body rod protein INQ48_14825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal INQ48_14830 PF13861 FlgD Tudor-like domain INQ48_14830 PF13860 FlgD Ig-like domain INQ48_14830 PF03963 Flagellar hook capping protein - N-terminal region INQ48_14835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal INQ48_14835 PF00460 Flagella basal body rod protein INQ48_14840 PF00460 Flagella basal body rod protein INQ48_14845 PF13144 Chaperone for flagella basal body P-ring formation INQ48_14860 PF06977 SdiA-regulated INQ48_14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_14865 PF03466 LysR substrate binding domain INQ48_14870 PF04166 Pyridoxal phosphate biosynthetic protein PdxA INQ48_14880 PF04542 Sigma-70 region 2 INQ48_14880 PF04539 Sigma-70 region 3 INQ48_14880 PF04545 Sigma-70, region 4 INQ48_14885 PF00448 SRP54-type protein, GTPase domain INQ48_14885 PF00448 SRP54-type protein, GTPase domain INQ48_14890 PF00771 FHIPEP family INQ48_14895 PF01312 FlhB HrpN YscU SpaS Family INQ48_14900 PF13677 Membrane MotB of proton-channel complex MotA/MotB INQ48_14900 PF00691 OmpA family INQ48_14905 PF01618 MotA/TolQ/ExbB proton channel family INQ48_14910 PF05280 Flagellar transcriptional activator (FlhC) INQ48_14915 PF05247 Flagellar transcriptional activator (FlhD) INQ48_14920 PF00700 Bacterial flagellin C-terminal helical region INQ48_14920 PF00669 Bacterial flagellin N-terminal helical region INQ48_14925 PF02465 Flagellar hook-associated protein 2 N-terminus INQ48_14925 PF07196 Flagellin hook IN motif INQ48_14925 PF07195 Flagellar hook-associated protein 2 C-terminus INQ48_14930 PF02561 Flagellar protein FliS INQ48_14950 PF14842 FliG N-terminal domain INQ48_14950 PF14841 FliG middle domain INQ48_14950 PF01706 FliG C-terminal domain INQ48_14960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INQ48_14960 PF18269 T3SS EscN ATPase C-terminal domain INQ48_14980 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term INQ48_14980 PF02154 Flagellar motor switch protein FliM INQ48_14985 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term INQ48_14990 PF04347 Flagellar biosynthesis protein, FliO INQ48_14995 PF00813 FliP family INQ48_15000 PF01313 Bacterial export proteins, family 3 INQ48_15005 PF01311 Bacterial export proteins, family 1 INQ48_15040 PF05175 Methyltransferase small domain INQ48_15045 PF01546 Peptidase family M20/M25/M40 INQ48_15045 PF07687 Peptidase dimerisation domain INQ48_15050 PF00437 Type II/IV secretion system protein INQ48_15055 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_15055 PF14602 Hexapeptide repeat of succinyl-transferase INQ48_15055 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal INQ48_15060 PF00155 Aminotransferase class I and II INQ48_15065 PF01810 LysE type translocator INQ48_15070 PF00583 Acetyltransferase (GNAT) family INQ48_15070 PF00696 Amino acid kinase family INQ48_15075 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_15075 PF17862 AAA+ lid domain INQ48_15075 PF01434 Peptidase family M41 INQ48_15080 PF11898 Domain of unknown function (DUF3418) INQ48_15080 PF04408 Helicase associated domain (HA2) INQ48_15080 PF00271 Helicase conserved C-terminal domain INQ48_15080 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold INQ48_15080 PF00270 DEAD/DEAH box helicase INQ48_15100 PF00155 Aminotransferase class I and II INQ48_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_15105 PF03466 LysR substrate binding domain INQ48_15125 PF02789 Cytosol aminopeptidase family, N-terminal domain INQ48_15125 PF00883 Cytosol aminopeptidase family, catalytic domain INQ48_15140 PF13458 Periplasmic binding protein INQ48_15160 PF01145 SPFH domain / Band 7 family INQ48_15170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain INQ48_15170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain INQ48_15170 PF01276 Orn/Lys/Arg decarboxylase, major domain INQ48_15175 PF14743 DNA ligase OB-like domain INQ48_15175 PF01068 ATP dependent DNA ligase domain INQ48_15185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_15190 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_15195 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_15195 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_15200 PF00005 ABC transporter INQ48_15200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_15205 PF06779 Uncharacterised MFS-type transporter YbfB INQ48_15210 PF02576 RimP N-terminal domain INQ48_15215 PF08529 NusA N-terminal domain INQ48_15215 PF00575 S1 RNA binding domain INQ48_15215 PF13184 NusA-like KH domain INQ48_15225 PF02033 Ribosome-binding factor A INQ48_15230 PF01509 TruB family pseudouridylate synthase (N terminal domain) INQ48_15230 PF16198 tRNA pseudouridylate synthase B C-terminal domain INQ48_15235 PF00679 Elongation factor G C-terminus INQ48_15235 PF03144 Elongation factor Tu domain 2 INQ48_15235 PF00009 Elongation factor Tu GTP binding domain INQ48_15255 PF08281 Sigma-70, region 4 INQ48_15255 PF04542 Sigma-70 region 2 INQ48_15265 PF01668 SmpB protein INQ48_15270 PF14525 AraC-binding-like domain INQ48_15270 PF12833 Helix-turn-helix domain INQ48_15285 PF01613 Flavin reductase like domain INQ48_15290 PF01738 Dienelactone hydrolase family INQ48_15295 PF03364 Polyketide cyclase / dehydrase and lipid transport INQ48_15300 PF03658 RnfH family Ubiquitin INQ48_15310 PF00571 CBS domain INQ48_15310 PF00478 IMP dehydrogenase / GMP reductase domain INQ48_15325 PF00958 GMP synthase C terminal domain INQ48_15325 PF00117 Glutamine amidotransferase class-I INQ48_15325 PF02540 NAD synthase INQ48_15335 PF00107 Zinc-binding dehydrogenase INQ48_15335 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_15345 PF12706 Beta-lactamase superfamily domain INQ48_15350 PF00440 Bacterial regulatory proteins, tetR family INQ48_15350 PF08361 MAATS-type transcriptional repressor, C-terminal region INQ48_15355 PF02423 Ornithine cyclodeaminase/mu-crystallin family INQ48_15360 PF01568 Molydopterin dinucleotide binding domain INQ48_15360 PF00384 Molybdopterin oxidoreductase INQ48_15365 PF02667 Short chain fatty acid transporter INQ48_15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_15370 PF03466 LysR substrate binding domain INQ48_15375 PF02678 Pirin INQ48_15375 PF05726 Pirin C-terminal cupin domain INQ48_15380 PF03466 LysR substrate binding domain INQ48_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_15405 PF00881 Nitroreductase family INQ48_15420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_15420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_15430 PF03466 LysR substrate binding domain INQ48_15435 PF00175 Oxidoreductase NAD-binding domain INQ48_15435 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_15435 PF00970 Oxidoreductase FAD-binding domain INQ48_15440 PF00355 Rieske [2Fe-2S] domain INQ48_15440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_15445 PF13577 SnoaL-like domain INQ48_15455 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_15460 PF00355 Rieske [2Fe-2S] domain INQ48_15480 PF00989 PAS fold INQ48_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_15480 PF00512 His Kinase A (phospho-acceptor) domain INQ48_15485 PF00196 Bacterial regulatory proteins, luxR family INQ48_15485 PF00072 Response regulator receiver domain INQ48_15505 PF14437 MafB19-like deaminase INQ48_15510 PF17676 LD-carboxypeptidase C-terminal domain INQ48_15510 PF02016 LD-carboxypeptidase N-terminal domain INQ48_15520 PF00211 Adenylate and Guanylate cyclase catalytic domain INQ48_15520 PF16701 Adenylate cyclase regulatory domain INQ48_15560 PF00593 TonB dependent receptor INQ48_15560 PF07715 TonB-dependent Receptor Plug Domain INQ48_15560 PF07660 Secretin and TonB N terminus short domain INQ48_15585 PF01618 MotA/TolQ/ExbB proton channel family INQ48_15590 PF02472 Biopolymer transport protein ExbD/TolR INQ48_15610 PF09312 SurA N-terminal domain INQ48_15635 PF00072 Response regulator receiver domain INQ48_15635 PF00486 Transcriptional regulatory protein, C terminal INQ48_15640 PF00512 His Kinase A (phospho-acceptor) domain INQ48_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_15640 PF07689 KaiB domain INQ48_15645 PF01339 CheB methylesterase INQ48_15650 PF01739 CheR methyltransferase, SAM binding domain INQ48_15650 PF03705 CheR methyltransferase, all-alpha domain INQ48_15655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) INQ48_15655 PF00072 Response regulator receiver domain INQ48_15655 PF01627 Hpt domain INQ48_15655 PF00512 His Kinase A (phospho-acceptor) domain INQ48_15655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_15655 PF00672 HAMP domain INQ48_15665 PF04851 Type III restriction enzyme, res subunit INQ48_15665 PF00929 Exonuclease INQ48_15665 PF13307 Helicase C-terminal domain INQ48_15675 PF01554 MatE INQ48_15680 PF12833 Helix-turn-helix domain INQ48_15680 PF06445 GyrI-like small molecule binding domain INQ48_15710 PF02585 GlcNAc-PI de-N-acetylase INQ48_15710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase INQ48_15735 PF00248 Aldo/keto reductase family INQ48_15740 PF12833 Helix-turn-helix domain INQ48_15740 PF06719 AraC-type transcriptional regulator N-terminus INQ48_15750 PF01545 Cation efflux family INQ48_15750 PF16916 Dimerisation domain of Zinc Transporter INQ48_15770 PF01799 [2Fe-2S] binding domain INQ48_15770 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_15775 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_15785 PF00355 Rieske [2Fe-2S] domain INQ48_15800 PF00248 Aldo/keto reductase family INQ48_15805 PF07311 Dodecin INQ48_15815 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP INQ48_15815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_15815 PF00034 Cytochrome c INQ48_15820 PF00005 ABC transporter INQ48_15835 PF01569 PAP2 superfamily INQ48_15855 PF01026 TatD related DNase INQ48_15865 PF09115 DNA polymerase III, delta subunit, C terminal INQ48_15870 PF02223 Thymidylate kinase INQ48_15875 PF02618 YceG-like family INQ48_15880 PF01571 Aminomethyltransferase folate-binding domain INQ48_15890 PF13673 Acetyltransferase (GNAT) domain INQ48_15895 PF07859 alpha/beta hydrolase fold INQ48_15900 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_15905 PF00465 Iron-containing alcohol dehydrogenase INQ48_15910 PF04717 Type VI secretion system, phage-baseplate injector INQ48_15910 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_15945 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_15955 PF01850 PIN domain INQ48_15965 PF17674 HHH domain INQ48_15965 PF00575 S1 RNA binding domain INQ48_15965 PF09371 Tex-like protein N-terminal domain INQ48_15965 PF16921 Tex protein YqgF-like domain INQ48_15985 PF01554 MatE INQ48_15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_15995 PF00512 His Kinase A (phospho-acceptor) domain INQ48_15995 PF00672 HAMP domain INQ48_16000 PF00486 Transcriptional regulatory protein, C terminal INQ48_16000 PF00072 Response regulator receiver domain INQ48_16005 PF00326 Prolyl oligopeptidase family INQ48_16010 PF00593 TonB dependent receptor INQ48_16010 PF07715 TonB-dependent Receptor Plug Domain INQ48_16015 PF04773 FecR protein INQ48_16015 PF16220 Domain of unknown function (DUF4880) INQ48_16020 PF04542 Sigma-70 region 2 INQ48_16020 PF08281 Sigma-70, region 4 INQ48_16025 PF04909 Amidohydrolase INQ48_16030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_16030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_16030 PF01842 ACT domain INQ48_16035 PF00356 Bacterial regulatory proteins, lacI family INQ48_16040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_16040 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_16045 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_16050 PF04607 Region found in RelA / SpoT proteins INQ48_16055 PF07690 Major Facilitator Superfamily INQ48_16065 PF02470 MlaD protein INQ48_16070 PF04403 Paraquat-inducible protein A INQ48_16075 PF04403 Paraquat-inducible protein A INQ48_16080 PF07690 Major Facilitator Superfamily INQ48_16085 PF07690 Major Facilitator Superfamily INQ48_16090 PF00296 Luciferase-like monooxygenase INQ48_16105 PF07690 Major Facilitator Superfamily INQ48_16120 PF07690 Major Facilitator Superfamily INQ48_16125 PF03466 LysR substrate binding domain INQ48_16125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_16140 PF00970 Oxidoreductase FAD-binding domain INQ48_16140 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_16140 PF00175 Oxidoreductase NAD-binding domain INQ48_16145 PF00392 Bacterial regulatory proteins, gntR family INQ48_16145 PF00155 Aminotransferase class I and II INQ48_16150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain INQ48_16150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain INQ48_16160 PF01565 FAD binding domain INQ48_16160 PF02913 FAD linked oxidases, C-terminal domain INQ48_16160 PF13183 4Fe-4S dicluster domain INQ48_16165 PF07729 FCD domain INQ48_16165 PF00392 Bacterial regulatory proteins, gntR family INQ48_16170 PF00266 Aminotransferase class-V INQ48_16175 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_16185 PF03466 LysR substrate binding domain INQ48_16185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_16190 PF07690 Major Facilitator Superfamily INQ48_16195 PF00248 Aldo/keto reductase family INQ48_16225 PF07690 Major Facilitator Superfamily INQ48_16230 PF03707 Bacterial signalling protein N terminal repeat INQ48_16230 PF00990 Diguanylate cyclase, GGDEF domain INQ48_16230 PF00563 EAL domain INQ48_16235 PF02525 Flavodoxin-like fold INQ48_16240 PF03466 LysR substrate binding domain INQ48_16240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_16250 PF01370 NAD dependent epimerase/dehydratase family INQ48_16260 PF00106 short chain dehydrogenase INQ48_16275 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_16275 PF18158 Adaptive response protein AidB N-terminal domain INQ48_16275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_16280 PF00107 Zinc-binding dehydrogenase INQ48_16280 PF16884 N-terminal domain of oxidoreductase INQ48_16305 PF12806 Acetyl-CoA dehydrogenase C-terminal like INQ48_16305 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_16305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_16305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_16310 PF00108 Thiolase, N-terminal domain INQ48_16310 PF02803 Thiolase, C-terminal domain INQ48_16315 PF01546 Peptidase family M20/M25/M40 INQ48_16315 PF07687 Peptidase dimerisation domain INQ48_16320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_16320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_16320 PF00378 Enoyl-CoA hydratase/isomerase INQ48_16325 PF00005 ABC transporter INQ48_16330 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_16330 PF00005 ABC transporter INQ48_16340 PF02653 Branched-chain amino acid transport system / permease component INQ48_16355 PF13193 AMP-binding enzyme C-terminal domain INQ48_16355 PF00501 AMP-binding enzyme INQ48_16360 PF00135 Carboxylesterase family INQ48_16370 PF02696 Uncharacterized ACR, YdiU/UPF0061 family INQ48_16375 PF01641 SelR domain INQ48_16380 PF04279 Intracellular septation protein A INQ48_16395 PF12833 Helix-turn-helix domain INQ48_16395 PF14525 AraC-binding-like domain INQ48_16400 PF14760 Rnk N-terminus INQ48_16400 PF01272 Transcription elongation factor, GreA/GreB, C-term INQ48_16405 PF02769 AIR synthase related protein, C-terminal domain INQ48_16405 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain INQ48_16405 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal INQ48_16410 PF00557 Metallopeptidase family M24 INQ48_16415 PF01909 Nucleotidyltransferase domain INQ48_16415 PF01966 HD domain INQ48_16415 PF08335 GlnD PII-uridylyltransferase INQ48_16420 PF00990 Diguanylate cyclase, GGDEF domain INQ48_16420 PF13185 GAF domain INQ48_16425 PF13426 PAS domain INQ48_16425 PF08448 PAS fold INQ48_16425 PF08447 PAS fold INQ48_16425 PF05231 MASE1 INQ48_16425 PF00990 Diguanylate cyclase, GGDEF domain INQ48_16425 PF00563 EAL domain INQ48_16440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain INQ48_16445 PF00535 Glycosyl transferase family 2 INQ48_16445 PF03552 Cellulose synthase INQ48_16445 PF07238 PilZ domain INQ48_16450 PF03170 Bacterial cellulose synthase subunit INQ48_16455 PF01270 Glycosyl hydrolases family 8 INQ48_16460 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) INQ48_16465 PF03707 Bacterial signalling protein N terminal repeat INQ48_16465 PF00990 Diguanylate cyclase, GGDEF domain INQ48_16465 PF00563 EAL domain INQ48_16475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INQ48_16475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INQ48_16475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INQ48_16475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INQ48_16480 PF03479 Plants and Prokaryotes Conserved (PCC) domain INQ48_16480 PF12804 MobA-like NTP transferase domain INQ48_16480 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_16485 PF00248 Aldo/keto reductase family INQ48_16495 PF01381 Helix-turn-helix INQ48_16505 PF00474 Sodium:solute symporter family INQ48_16510 PF01842 ACT domain INQ48_16510 PF00742 Homoserine dehydrogenase INQ48_16510 PF03447 Homoserine dehydrogenase, NAD binding domain INQ48_16515 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_16520 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_16525 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_16535 PF01327 Polypeptide deformylase INQ48_16545 PF01653 NAD-dependent DNA ligase adenylation domain INQ48_16545 PF00533 BRCA1 C Terminus (BRCT) domain INQ48_16545 PF12826 Helix-hairpin-helix motif INQ48_16545 PF03120 NAD-dependent DNA ligase OB-fold domain INQ48_16545 PF03119 NAD-dependent DNA ligase C4 zinc finger domain INQ48_16555 PF02463 RecF/RecN/SMC N terminal domain INQ48_16555 PF06470 SMC proteins Flexible Hinge Domain INQ48_16570 PF13657 HipA N-terminal domain INQ48_16570 PF07804 HipA-like C-terminal domain INQ48_16600 PF01522 Polysaccharide deacetylase INQ48_16600 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain INQ48_16620 PF07977 FabA-like domain INQ48_16635 PF05872 Bacterial protein of unknown function (DUF853) INQ48_16640 PF00027 Cyclic nucleotide-binding domain INQ48_16640 PF13545 Crp-like helix-turn-helix domain INQ48_16655 PF04542 Sigma-70 region 2 INQ48_16655 PF08281 Sigma-70, region 4 INQ48_16675 PF01774 UreD urease accessory protein INQ48_16685 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_16690 PF01048 Phosphorylase superfamily INQ48_16700 PF00005 ABC transporter INQ48_16705 PF02653 Branched-chain amino acid transport system / permease component INQ48_16710 PF02653 Branched-chain amino acid transport system / permease component INQ48_16730 PF07969 Amidohydrolase family INQ48_16735 PF00135 Carboxylesterase family INQ48_16740 PF02146 Sir2 family INQ48_16745 PF00664 ABC transporter transmembrane region INQ48_16745 PF00005 ABC transporter INQ48_16755 PF08411 Exonuclease C-terminal INQ48_16755 PF00929 Exonuclease INQ48_16760 PF13396 Phospholipase_D-nuclease N-terminal INQ48_16760 PF13091 PLD-like domain INQ48_16765 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_16765 PF02861 Clp amino terminal domain, pathogenicity island component INQ48_16765 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_16765 PF07724 AAA domain (Cdc48 subfamily) INQ48_16765 PF17871 AAA lid domain INQ48_16770 PF02617 ATP-dependent Clp protease adaptor protein ClpS INQ48_16800 PF14331 ImcF-related N-terminal domain INQ48_16800 PF06761 Intracellular multiplication and human macrophage-killing INQ48_16800 PF06744 Type VI secretion protein IcmF C-terminal INQ48_16805 PF05736 OprF membrane domain INQ48_16805 PF00691 OmpA family INQ48_16815 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE INQ48_16830 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath INQ48_16835 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 INQ48_16840 PF07724 AAA domain (Cdc48 subfamily) INQ48_16840 PF17871 AAA lid domain INQ48_16840 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_16840 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_16845 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_16865 PF02777 Iron/manganese superoxide dismutases, C-terminal domain INQ48_16865 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain INQ48_16870 PF02601 Exonuclease VII, large subunit INQ48_16870 PF13742 OB-fold nucleic acid binding domain INQ48_16875 PF01618 MotA/TolQ/ExbB proton channel family INQ48_16880 PF02472 Biopolymer transport protein ExbD/TolR INQ48_16885 PF02606 Tetraacyldisaccharide-1-P 4'-kinase INQ48_16890 PF03966 Trm112p-like protein INQ48_16895 PF02348 Cytidylyltransferase INQ48_16905 PF03527 RHS protein INQ48_16905 PF05593 RHS Repeat INQ48_16915 PF04717 Type VI secretion system, phage-baseplate injector INQ48_16915 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_16920 PF05191 Adenylate kinase, active site lid INQ48_16925 PF17763 Glutaminase/Asparaginase C-terminal domain INQ48_16925 PF00710 Asparaginase, N-terminal INQ48_16930 PF01726 LexA DNA binding domain INQ48_16930 PF00717 Peptidase S24-like INQ48_16940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_16940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_16945 PF07690 Major Facilitator Superfamily INQ48_16950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_16950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_16950 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain INQ48_16955 PF00378 Enoyl-CoA hydratase/isomerase INQ48_16960 PF00027 Cyclic nucleotide-binding domain INQ48_16960 PF13545 Crp-like helix-turn-helix domain INQ48_16970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_16970 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_16970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_16980 PF00583 Acetyltransferase (GNAT) family INQ48_16985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INQ48_16985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INQ48_16985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INQ48_16985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INQ48_16990 PF00809 Pterin binding enzyme INQ48_16995 PF17862 AAA+ lid domain INQ48_16995 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_16995 PF01434 Peptidase family M41 INQ48_16995 PF06480 FtsH Extracellular INQ48_17000 PF01728 FtsJ-like methyltransferase INQ48_17005 PF01985 CRS1 / YhbY (CRM) domain INQ48_17020 PF01272 Transcription elongation factor, GreA/GreB, C-term INQ48_17020 PF03449 Transcription elongation factor, N-terminal INQ48_17030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain INQ48_17030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_17030 PF02142 MGS-like domain INQ48_17035 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain INQ48_17035 PF00117 Glutamine amidotransferase class-I INQ48_17040 PF08032 RNA 2'-O ribose methyltransferase substrate binding INQ48_17040 PF00588 SpoU rRNA Methylase family INQ48_17045 PF01351 Ribonuclease HII INQ48_17050 PF02684 Lipid-A-disaccharide synthetase INQ48_17055 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_17055 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 INQ48_17060 PF07977 FabA-like domain INQ48_17065 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_17065 PF14602 Hexapeptide repeat of succinyl-transferase INQ48_17065 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD INQ48_17075 PF01103 Surface antigen INQ48_17075 PF07244 Surface antigen variable number repeat INQ48_17080 PF17820 PDZ domain INQ48_17080 PF02163 Peptidase family M50 INQ48_17085 PF13288 DXP reductoisomerase C-terminal domain INQ48_17085 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain INQ48_17085 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase INQ48_17095 PF01255 Putative undecaprenyl diphosphate synthase INQ48_17100 PF01765 Ribosome recycling factor INQ48_17105 PF00696 Amino acid kinase family INQ48_17110 PF00889 Elongation factor TS INQ48_17115 PF00318 Ribosomal protein S2 INQ48_17120 PF01266 FAD dependent oxidoreductase INQ48_17130 PF01256 Carbohydrate kinase INQ48_17130 PF03853 YjeF-related protein N-terminus INQ48_17140 PF17876 Cold shock domain INQ48_17140 PF08461 Ribonuclease R winged-helix domain INQ48_17140 PF08206 Ribonuclease B OB domain INQ48_17140 PF00773 RNB domain INQ48_17140 PF00575 S1 RNA binding domain INQ48_17155 PF18693 TRAM domain INQ48_17155 PF00919 Uncharacterized protein family UPF0004 INQ48_17155 PF04055 Radical SAM superfamily INQ48_17160 PF05233 PHB accumulation regulatory domain INQ48_17160 PF07879 PHB/PHA accumulation regulator DNA-binding domain INQ48_17175 PF13291 ACT domain INQ48_17175 PF02824 TGS domain INQ48_17175 PF04607 Region found in RelA / SpoT proteins INQ48_17185 PF00106 short chain dehydrogenase INQ48_17200 PF00072 Response regulator receiver domain INQ48_17200 PF00486 Transcriptional regulatory protein, C terminal INQ48_17205 PF00672 HAMP domain INQ48_17205 PF00512 His Kinase A (phospho-acceptor) domain INQ48_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_17210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase INQ48_17210 PF02542 YgbB family INQ48_17215 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase INQ48_17215 PF02542 YgbB family INQ48_17220 PF02559 CarD-like/TRCF domain INQ48_17220 PF00270 DEAD/DEAH box helicase INQ48_17220 PF00271 Helicase conserved C-terminal domain INQ48_17220 PF03461 TRCF domain INQ48_17220 PF17757 UvrB interaction domain INQ48_17230 PF01850 PIN domain INQ48_17250 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_17250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_17250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_17255 PF02515 CoA-transferase family III INQ48_17260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_17260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_17260 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_17265 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_17265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_17265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_17270 PF00378 Enoyl-CoA hydratase/isomerase INQ48_17275 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_17295 PF00155 Aminotransferase class I and II INQ48_17300 PF00730 HhH-GPD superfamily base excision DNA repair protein INQ48_17300 PF00633 Helix-hairpin-helix motif INQ48_17300 PF10576 Iron-sulfur binding domain of endonuclease III INQ48_17310 PF02654 Cobalamin-5-phosphate synthase INQ48_17315 PF02277 Phosphoribosyltransferase INQ48_17320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain INQ48_17320 PF07685 CobB/CobQ-like glutamine amidotransferase domain INQ48_17340 PF02321 Outer membrane efflux protein INQ48_17345 PF00873 AcrB/AcrD/AcrF family INQ48_17350 PF00529 HlyD membrane-fusion protein of T1SS INQ48_17350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_17355 PF07859 alpha/beta hydrolase fold INQ48_17360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_17360 PF03466 LysR substrate binding domain INQ48_17375 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_17390 PF04172 LrgB-like family INQ48_17405 PF03186 CobD/Cbib protein INQ48_17410 PF02514 CobN/Magnesium Chelatase INQ48_17425 PF00881 Nitroreductase family INQ48_17430 PF12557 Cob(I)alamin adenosyltransferase N terminal INQ48_17430 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP INQ48_17435 PF00005 ABC transporter INQ48_17440 PF01032 FecCD transport family INQ48_17450 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase INQ48_17455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain INQ48_17455 PF07685 CobB/CobQ-like glutamine amidotransferase domain INQ48_17460 PF07715 TonB-dependent Receptor Plug Domain INQ48_17460 PF00593 TonB dependent receptor INQ48_17465 PF00654 Voltage gated chloride channel INQ48_17480 PF01925 Sulfite exporter TauE/SafE INQ48_17485 PF01494 FAD binding domain INQ48_17495 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_17500 PF03466 LysR substrate binding domain INQ48_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_17505 PF00561 alpha/beta hydrolase fold INQ48_17510 PF12833 Helix-turn-helix domain INQ48_17515 PF00795 Carbon-nitrogen hydrolase INQ48_17525 PF00144 Beta-lactamase INQ48_17525 PF11954 Domain of unknown function (DUF3471) INQ48_17530 PF00501 AMP-binding enzyme INQ48_17530 PF13193 AMP-binding enzyme C-terminal domain INQ48_17535 PF00378 Enoyl-CoA hydratase/isomerase INQ48_17540 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_17550 PF00392 Bacterial regulatory proteins, gntR family INQ48_17550 PF07729 FCD domain INQ48_17555 PF01790 Prolipoprotein diacylglyceryl transferase INQ48_17570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_17570 PF03466 LysR substrate binding domain INQ48_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_17575 PF03466 LysR substrate binding domain INQ48_17580 PF00920 Dehydratase family INQ48_17600 PF00034 Cytochrome c INQ48_17610 PF13193 AMP-binding enzyme C-terminal domain INQ48_17610 PF16177 Acetyl-coenzyme A synthetase N-terminus INQ48_17610 PF00501 AMP-binding enzyme INQ48_17615 PF03350 Uncharacterized protein family, UPF0114 INQ48_17620 PF03466 LysR substrate binding domain INQ48_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_17625 PF13460 NAD(P)H-binding INQ48_17630 PF00206 Lyase INQ48_17630 PF10415 Fumarase C C-terminus INQ48_17635 PF00005 ABC transporter INQ48_17635 PF00571 CBS domain INQ48_17640 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_17645 PF04069 Substrate binding domain of ABC-type glycine betaine transport system INQ48_17655 PF01177 Asp/Glu/Hydantoin racemase INQ48_17695 PF02190 ATP-dependent protease La (LON) substrate-binding domain INQ48_17695 PF05362 Lon protease (S16) C-terminal proteolytic domain INQ48_17695 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_17700 PF06689 ClpX C4-type zinc finger INQ48_17700 PF07724 AAA domain (Cdc48 subfamily) INQ48_17700 PF10431 C-terminal, D2-small domain, of ClpB protein INQ48_17705 PF00574 Clp protease INQ48_17710 PF05698 Bacterial trigger factor protein (TF) C-terminus INQ48_17710 PF05697 Bacterial trigger factor protein (TF) INQ48_17710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_17720 PF00873 AcrB/AcrD/AcrF family INQ48_17725 PF13533 Biotin-lipoyl like INQ48_17730 PF02705 K+ potassium transporter INQ48_17745 PF01593 Flavin containing amine oxidoreductase INQ48_17755 PF01810 LysE type translocator INQ48_17765 PF13419 Haloacid dehalogenase-like hydrolase INQ48_17770 PF00762 Ferrochelatase INQ48_17775 PF17991 Thioredoxin like C-terminal domain INQ48_17775 PF02683 Cytochrome C biogenesis protein transmembrane region INQ48_17775 PF00578 AhpC/TSA family INQ48_17785 PF12697 Alpha/beta hydrolase family INQ48_17800 PF00005 ABC transporter INQ48_17805 PF00005 ABC transporter INQ48_17810 PF10503 Esterase PHB depolymerase INQ48_17840 PF00072 Response regulator receiver domain INQ48_17840 PF02954 Bacterial regulatory protein, Fis family INQ48_17840 PF00158 Sigma-54 interaction domain INQ48_17850 PF02321 Outer membrane efflux protein INQ48_17860 PF00873 AcrB/AcrD/AcrF family INQ48_17865 PF00593 TonB dependent receptor INQ48_17865 PF07715 TonB-dependent Receptor Plug Domain INQ48_17870 PF16220 Domain of unknown function (DUF4880) INQ48_17870 PF04773 FecR protein INQ48_17875 PF08281 Sigma-70, region 4 INQ48_17875 PF04542 Sigma-70 region 2 INQ48_17880 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_17895 PF00486 Transcriptional regulatory protein, C terminal INQ48_17895 PF00072 Response regulator receiver domain INQ48_17900 PF08521 Two-component sensor kinase N-terminal INQ48_17900 PF00512 His Kinase A (phospho-acceptor) domain INQ48_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_17905 PF01479 S4 domain INQ48_17910 PF03976 Polyphosphate kinase 2 (PPK2) INQ48_17925 PF00664 ABC transporter transmembrane region INQ48_17925 PF00005 ABC transporter INQ48_17930 PF00356 Bacterial regulatory proteins, lacI family INQ48_17950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_17950 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_17950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_18135 PF01555 DNA methylase INQ48_18195 PF06630 Enterobacterial exodeoxyribonuclease VIII INQ48_18195 PF12684 PDDEXK-like domain of unknown function (DUF3799) INQ48_18280 PF13356 Arm DNA-binding domain INQ48_18280 PF00589 Phage integrase family INQ48_18290 PF00696 Amino acid kinase family INQ48_18290 PF01842 ACT domain INQ48_18290 PF13840 ACT domain INQ48_18295 PF09179 TilS substrate binding domain INQ48_18295 PF01171 PP-loop family INQ48_18300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit INQ48_18305 PF02805 Metal binding domain of Ada INQ48_18305 PF06029 AlkA N-terminal domain INQ48_18305 PF00730 HhH-GPD superfamily base excision DNA repair protein INQ48_18305 PF12833 Helix-turn-helix domain INQ48_18310 PF09190 DALR domain INQ48_18310 PF01406 tRNA synthetases class I (C) catalytic domain INQ48_18320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD INQ48_18325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD INQ48_18330 PF00149 Calcineurin-like phosphoesterase INQ48_18335 PF06167 Glucose-regulated metallo-peptidase M90 INQ48_18340 PF01494 FAD binding domain INQ48_18355 PF01464 Transglycosylase SLT domain INQ48_18355 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain INQ48_18360 PF00464 Serine hydroxymethyltransferase INQ48_18365 PF03477 ATP cone domain INQ48_18375 PF07963 Prokaryotic N-terminal methylation motif INQ48_18375 PF14245 Type IV pilin PilA INQ48_18380 PF05567 Neisseria PilC beta-propeller domain INQ48_18400 PF01872 RibD C-terminal domain INQ48_18400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INQ48_18405 PF00677 Lumazine binding domain INQ48_18410 PF00925 GTP cyclohydrolase II INQ48_18410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase INQ48_18415 PF00885 6,7-dimethyl-8-ribityllumazine synthase INQ48_18420 PF01029 NusB family INQ48_18425 PF00155 Aminotransferase class I and II INQ48_18430 PF03061 Thioesterase superfamily INQ48_18435 PF01618 MotA/TolQ/ExbB proton channel family INQ48_18440 PF02472 Biopolymer transport protein ExbD/TolR INQ48_18450 PF00905 Penicillin binding protein transpeptidase domain INQ48_18450 PF03717 Penicillin-binding Protein dimerisation domain INQ48_18460 PF13195 Protein of unknown function (DUF4011) INQ48_18460 PF13086 AAA domain INQ48_18460 PF13086 AAA domain INQ48_18460 PF13087 AAA domain INQ48_18460 PF13087 AAA domain INQ48_18460 PF13195 Protein of unknown function (DUF4011) INQ48_18470 PF02811 PHP domain INQ48_18470 PF07733 Bacterial DNA polymerase III alpha NTPase domain INQ48_18470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INQ48_18470 PF01336 OB-fold nucleic acid binding domain INQ48_18470 PF14579 Helix-hairpin-helix motif INQ48_18475 PF17773 UPF0176 acylphosphatase like domain INQ48_18475 PF00581 Rhodanese-like domain INQ48_18480 PF00486 Transcriptional regulatory protein, C terminal INQ48_18480 PF00072 Response regulator receiver domain INQ48_18485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_18485 PF00512 His Kinase A (phospho-acceptor) domain INQ48_18495 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_18510 PF05726 Pirin C-terminal cupin domain INQ48_18510 PF02678 Pirin INQ48_18515 PF03358 NADPH-dependent FMN reductase INQ48_18525 PF17954 Quercetinase C-terminal cupin domain INQ48_18525 PF02678 Pirin INQ48_18530 PF03466 LysR substrate binding domain INQ48_18530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18535 PF01266 FAD dependent oxidoreductase INQ48_18535 PF05430 S-adenosyl-L-methionine-dependent methyltransferase INQ48_18540 PF00749 tRNA synthetases class I (E and Q), catalytic domain INQ48_18545 PF02390 Putative methyltransferase INQ48_18570 PF01965 DJ-1/PfpI family INQ48_18570 PF12833 Helix-turn-helix domain INQ48_18575 PF07690 Major Facilitator Superfamily INQ48_18575 PF00083 Sugar (and other) transporter INQ48_18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18580 PF03466 LysR substrate binding domain INQ48_18590 PF07690 Major Facilitator Superfamily INQ48_18595 PF00027 Cyclic nucleotide-binding domain INQ48_18595 PF13545 Crp-like helix-turn-helix domain INQ48_18605 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_18610 PF01758 Sodium Bile acid symporter family INQ48_18615 PF03466 LysR substrate binding domain INQ48_18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18620 PF00890 FAD binding domain INQ48_18620 PF03358 NADPH-dependent FMN reductase INQ48_18620 PF04205 FMN-binding domain INQ48_18630 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_18635 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18640 PF04909 Amidohydrolase INQ48_18645 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18650 PF01842 ACT domain INQ48_18650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_18650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_18655 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18660 PF14310 Fibronectin type III-like domain INQ48_18660 PF01915 Glycosyl hydrolase family 3 C-terminal domain INQ48_18660 PF00933 Glycosyl hydrolase family 3 N terminal domain INQ48_18670 PF03895 YadA-like membrane anchor domain INQ48_18670 PF05658 Head domain of trimeric autotransporter adhesin INQ48_18670 PF13018 Extended Signal Peptide of Type V secretion system INQ48_18670 PF05662 Coiled stalk of trimeric autotransporter adhesin INQ48_18675 PF05506 Domain of unknown function (DUF756) INQ48_18675 PF04185 Phosphoesterase family INQ48_18685 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_18690 PF00005 ABC transporter INQ48_18700 PF18407 GCN5-related N-acetyltransferase like domain INQ48_18700 PF13344 Haloacid dehalogenase-like hydrolase INQ48_18705 PF01380 SIS domain INQ48_18705 PF01418 Helix-turn-helix domain, rpiR family INQ48_18710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INQ48_18710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INQ48_18715 PF03466 LysR substrate binding domain INQ48_18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18720 PF00155 Aminotransferase class I and II INQ48_18725 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18730 PF03737 Aldolase/RraA INQ48_18745 PF03069 Acetamidase/Formamidase family INQ48_18750 PF00005 ABC transporter INQ48_18755 PF00005 ABC transporter INQ48_18775 PF00512 His Kinase A (phospho-acceptor) domain INQ48_18775 PF01627 Hpt domain INQ48_18775 PF00072 Response regulator receiver domain INQ48_18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_18780 PF00072 Response regulator receiver domain INQ48_18785 PF00437 Type II/IV secretion system protein INQ48_18785 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain INQ48_18795 PF00155 Aminotransferase class I and II INQ48_18800 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_18805 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_18810 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_18815 PF00005 ABC transporter INQ48_18820 PF03737 Aldolase/RraA INQ48_18825 PF01842 ACT domain INQ48_18825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_18825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_18830 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18835 PF00990 Diguanylate cyclase, GGDEF domain INQ48_18835 PF08448 PAS fold INQ48_18840 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18850 PF03466 LysR substrate binding domain INQ48_18850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18875 PF01433 Peptidase family M1 domain INQ48_18875 PF11838 ERAP1-like C-terminal domain INQ48_18880 PF00561 alpha/beta hydrolase fold INQ48_18880 PF00364 Biotin-requiring enzyme INQ48_18885 PF00486 Transcriptional regulatory protein, C terminal INQ48_18885 PF00072 Response regulator receiver domain INQ48_18890 PF08521 Two-component sensor kinase N-terminal INQ48_18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_18890 PF00512 His Kinase A (phospho-acceptor) domain INQ48_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_18900 PF03466 LysR substrate binding domain INQ48_18905 PF01042 Endoribonuclease L-PSP INQ48_18910 PF01810 LysE type translocator INQ48_18915 PF13426 PAS domain INQ48_18915 PF00072 Response regulator receiver domain INQ48_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_18920 PF00072 Response regulator receiver domain INQ48_18925 PF00360 Phytochrome region INQ48_18925 PF00512 His Kinase A (phospho-acceptor) domain INQ48_18925 PF01590 GAF domain INQ48_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_18925 PF08446 PAS fold INQ48_18935 PF02954 Bacterial regulatory protein, Fis family INQ48_18935 PF00072 Response regulator receiver domain INQ48_18945 PF07690 Major Facilitator Superfamily INQ48_18950 PF13609 Gram-negative porin INQ48_18955 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_18955 PF00175 Oxidoreductase NAD-binding domain INQ48_18960 PF00355 Rieske [2Fe-2S] domain INQ48_18970 PF01494 FAD binding domain INQ48_18975 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_18985 PF00171 Aldehyde dehydrogenase family INQ48_18990 PF01958 Domain of unknown function DUF108 INQ48_18990 PF03447 Homoserine dehydrogenase, NAD binding domain INQ48_18995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_18995 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_18995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_19000 PF00106 short chain dehydrogenase INQ48_19005 PF01614 Bacterial transcriptional regulator INQ48_19005 PF09339 IclR helix-turn-helix domain INQ48_19025 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_19030 PF01266 FAD dependent oxidoreductase INQ48_19035 PF02558 Ketopantoate reductase PanE/ApbA INQ48_19035 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_19040 PF02272 DHHA1 domain INQ48_19040 PF01411 tRNA synthetases class II (A) INQ48_19040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INQ48_19050 PF07690 Major Facilitator Superfamily INQ48_19080 PF13556 PucR C-terminal helix-turn-helix domain INQ48_19080 PF07905 Purine catabolism regulatory protein-like family INQ48_19095 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term INQ48_19095 PF12833 Helix-turn-helix domain INQ48_19130 PF14579 Helix-hairpin-helix motif INQ48_19130 PF02811 PHP domain INQ48_19130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INQ48_19130 PF07733 Bacterial DNA polymerase III alpha NTPase domain INQ48_19150 PF01323 DSBA-like thioredoxin domain INQ48_19155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19155 PF03466 LysR substrate binding domain INQ48_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19160 PF03466 LysR substrate binding domain INQ48_19165 PF07687 Peptidase dimerisation domain INQ48_19165 PF01546 Peptidase family M20/M25/M40 INQ48_19185 PF01292 Prokaryotic cytochrome b561 INQ48_19195 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase INQ48_19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19200 PF03466 LysR substrate binding domain INQ48_19205 PF00005 ABC transporter INQ48_19205 PF00664 ABC transporter transmembrane region INQ48_19215 PF00440 Bacterial regulatory proteins, tetR family INQ48_19220 PF05947 Type VI secretion system, TssF INQ48_19235 PF01926 50S ribosome-binding GTPase INQ48_19235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal INQ48_19240 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_19240 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_19245 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_19245 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_19250 PF01799 [2Fe-2S] binding domain INQ48_19250 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19260 PF03466 LysR substrate binding domain INQ48_19275 PF03006 Haemolysin-III related INQ48_19285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INQ48_19310 PF04185 Phosphoesterase family INQ48_19310 PF05506 Domain of unknown function (DUF756) INQ48_19315 PF00455 DeoR C terminal sensor domain INQ48_19315 PF08220 DeoR-like helix-turn-helix domain INQ48_19320 PF02540 NAD synthase INQ48_19320 PF00958 GMP synthase C terminal domain INQ48_19320 PF00117 Glutamine amidotransferase class-I INQ48_19325 PF01066 CDP-alcohol phosphatidyltransferase INQ48_19335 PF01804 Penicillin amidase INQ48_19340 PF00300 Histidine phosphatase superfamily (branch 1) INQ48_19340 PF00106 short chain dehydrogenase INQ48_19345 PF01556 DnaJ C terminal domain INQ48_19345 PF00226 DnaJ domain INQ48_19355 PF09278 MerR, DNA binding INQ48_19355 PF00376 MerR family regulatory protein INQ48_19360 PF00271 Helicase conserved C-terminal domain INQ48_19360 PF18337 RapA N-terminal Tudor like domain INQ48_19360 PF18339 RapA N-terminal Tudor like domain 1 INQ48_19360 PF00176 SNF2 family N-terminal domain INQ48_19360 PF12137 RNA polymerase recycling family C-terminal INQ48_19375 PF07687 Peptidase dimerisation domain INQ48_19375 PF01546 Peptidase family M20/M25/M40 INQ48_19390 PF13180 PDZ domain INQ48_19395 PF13406 Transglycosylase SLT domain INQ48_19405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_19405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_19410 PF00378 Enoyl-CoA hydratase/isomerase INQ48_19415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_19415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_19415 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_19425 PF00171 Aldehyde dehydrogenase family INQ48_19430 PF03466 LysR substrate binding domain INQ48_19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19435 PF03466 LysR substrate binding domain INQ48_19440 PF00701 Dihydrodipicolinate synthetase family INQ48_19455 PF13378 Enolase C-terminal domain-like INQ48_19460 PF00155 Aminotransferase class I and II INQ48_19465 PF02515 CoA-transferase family III INQ48_19470 PF01144 Coenzyme A transferase INQ48_19475 PF01144 Coenzyme A transferase INQ48_19480 PF00072 Response regulator receiver domain INQ48_19480 PF00196 Bacterial regulatory proteins, luxR family INQ48_19500 PF00171 Aldehyde dehydrogenase family INQ48_19505 PF00158 Sigma-54 interaction domain INQ48_19505 PF02954 Bacterial regulatory protein, Fis family INQ48_19505 PF01590 GAF domain INQ48_19520 PF04349 Periplasmic glucan biosynthesis protein, MdoG INQ48_19525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19525 PF03466 LysR substrate binding domain INQ48_19535 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase INQ48_19535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_19540 PF13520 Amino acid permease INQ48_19545 PF06751 Ethanolamine ammonia lyase large subunit (EutB) INQ48_19550 PF05985 Ethanolamine ammonia-lyase light chain (EutC) INQ48_19570 PF00884 Sulfatase INQ48_19570 PF08019 Phosphoethanolamine transferase EptA/EptB INQ48_19580 PF00486 Transcriptional regulatory protein, C terminal INQ48_19580 PF00072 Response regulator receiver domain INQ48_19585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_19585 PF08521 Two-component sensor kinase N-terminal INQ48_19585 PF00512 His Kinase A (phospho-acceptor) domain INQ48_19620 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_19620 PF01968 Hydantoinase/oxoprolinase INQ48_19625 PF07690 Major Facilitator Superfamily INQ48_19630 PF07286 Protein of unknown function (DUF1445) INQ48_19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19635 PF03466 LysR substrate binding domain INQ48_19640 PF01370 NAD dependent epimerase/dehydratase family INQ48_19645 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_19655 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_19655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_19670 PF07690 Major Facilitator Superfamily INQ48_19685 PF03466 LysR substrate binding domain INQ48_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_19700 PF01494 FAD binding domain INQ48_19705 PF01979 Amidohydrolase family INQ48_19710 PF07859 alpha/beta hydrolase fold INQ48_19715 PF08669 Glycine cleavage T-protein C-terminal barrel domain INQ48_19715 PF01571 Aminomethyltransferase folate-binding domain INQ48_19720 PF01597 Glycine cleavage H-protein INQ48_19725 PF02347 Glycine cleavage system P-protein INQ48_19735 PF00561 alpha/beta hydrolase fold INQ48_19750 PF03060 Nitronate monooxygenase INQ48_19780 PF07690 Major Facilitator Superfamily INQ48_19780 PF00083 Sugar (and other) transporter INQ48_19785 PF01261 Xylose isomerase-like TIM barrel INQ48_19785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_19795 PF07690 Major Facilitator Superfamily INQ48_19805 PF00206 Lyase INQ48_19805 PF10397 Adenylosuccinate lyase C-terminus INQ48_19810 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_19810 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_19810 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_19815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_19815 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_19815 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_19820 PF09339 IclR helix-turn-helix domain INQ48_19820 PF01614 Bacterial transcriptional regulator INQ48_19825 PF02798 Glutathione S-transferase, N-terminal domain INQ48_19830 PF00206 Lyase INQ48_19830 PF10415 Fumarase C C-terminus INQ48_19835 PF00375 Sodium:dicarboxylate symporter family INQ48_19840 PF10397 Adenylosuccinate lyase C-terminus INQ48_19840 PF00206 Lyase INQ48_19845 PF00392 Bacterial regulatory proteins, gntR family INQ48_19845 PF07702 UTRA domain INQ48_19860 PF12951 Passenger-associated-transport-repeat INQ48_19880 PF00486 Transcriptional regulatory protein, C terminal INQ48_19880 PF00072 Response regulator receiver domain INQ48_19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_19885 PF00512 His Kinase A (phospho-acceptor) domain INQ48_19885 PF01627 Hpt domain INQ48_19885 PF00072 Response regulator receiver domain INQ48_19885 PF00672 HAMP domain INQ48_19890 PF12951 Passenger-associated-transport-repeat INQ48_19890 PF12951 Passenger-associated-transport-repeat INQ48_19900 PF00486 Transcriptional regulatory protein, C terminal INQ48_19900 PF00072 Response regulator receiver domain INQ48_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_19905 PF00512 His Kinase A (phospho-acceptor) domain INQ48_19905 PF00672 HAMP domain INQ48_19910 PF12951 Passenger-associated-transport-repeat INQ48_19910 PF12951 Passenger-associated-transport-repeat INQ48_19910 PF12951 Passenger-associated-transport-repeat INQ48_19915 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_19920 PF00072 Response regulator receiver domain INQ48_19920 PF00486 Transcriptional regulatory protein, C terminal INQ48_19925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_19925 PF00512 His Kinase A (phospho-acceptor) domain INQ48_19945 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_19950 PF03972 MmgE/PrpD family INQ48_19960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_19960 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_19960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_19970 PF02515 CoA-transferase family III INQ48_19975 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_19980 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_19985 PF02311 AraC-like ligand binding domain INQ48_19985 PF12833 Helix-turn-helix domain INQ48_19990 PF01979 Amidohydrolase family INQ48_19995 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20000 PF00005 ABC transporter INQ48_20000 PF08402 TOBE domain INQ48_20010 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20015 PF03942 DTW domain INQ48_20025 PF00005 ABC transporter INQ48_20030 PF02653 Branched-chain amino acid transport system / permease component INQ48_20035 PF13407 Periplasmic binding protein domain INQ48_20040 PF06826 Predicted Permease Membrane Region INQ48_20040 PF02080 TrkA-C domain INQ48_20045 PF02080 TrkA-C domain INQ48_20045 PF06826 Predicted Permease Membrane Region INQ48_20050 PF00155 Aminotransferase class I and II INQ48_20065 PF01264 Chorismate synthase INQ48_20075 PF07690 Major Facilitator Superfamily INQ48_20085 PF01022 Bacterial regulatory protein, arsR family INQ48_20105 PF00378 Enoyl-CoA hydratase/isomerase INQ48_20120 PF13452 N-terminal half of MaoC dehydratase INQ48_20130 PF00501 AMP-binding enzyme INQ48_20130 PF13193 AMP-binding enzyme C-terminal domain INQ48_20145 PF08173 Membrane bound YbgT-like protein INQ48_20150 PF02322 Cytochrome bd terminal oxidase subunit II INQ48_20155 PF01654 Cytochrome bd terminal oxidase subunit I INQ48_20160 PF00005 ABC transporter INQ48_20160 PF00664 ABC transporter transmembrane region INQ48_20165 PF00005 ABC transporter INQ48_20165 PF00664 ABC transporter transmembrane region INQ48_20180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_20180 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_20180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_20180 PF12806 Acetyl-CoA dehydrogenase C-terminal like INQ48_20185 PF01012 Electron transfer flavoprotein domain INQ48_20185 PF00766 Electron transfer flavoprotein FAD-binding domain INQ48_20190 PF01012 Electron transfer flavoprotein domain INQ48_20195 PF00924 Mechanosensitive ion channel INQ48_20195 PF12795 Mechanosensitive ion channel porin domain INQ48_20195 PF12794 Mechanosensitive ion channel inner membrane domain 1 INQ48_20200 PF00850 Histone deacetylase domain INQ48_20205 PF17863 AAA lid domain INQ48_20205 PF07726 ATPase family associated with various cellular activities (AAA) INQ48_20220 PF11992 Domain of unknown function (DUF3488) INQ48_20220 PF13559 Domain of unknown function (DUF4129) INQ48_20220 PF01841 Transglutaminase-like superfamily INQ48_20240 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_20240 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_20255 PF00005 ABC transporter INQ48_20270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III INQ48_20270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal INQ48_20290 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20295 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20300 PF17912 MalK OB fold domain INQ48_20300 PF00005 ABC transporter INQ48_20305 PF00005 ABC transporter INQ48_20305 PF17912 MalK OB fold domain INQ48_20310 PF01266 FAD dependent oxidoreductase INQ48_20310 PF16901 C-terminal domain of alpha-glycerophosphate oxidase INQ48_20315 PF00455 DeoR C terminal sensor domain INQ48_20315 PF08220 DeoR-like helix-turn-helix domain INQ48_20320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_20320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_20335 PF08019 Phosphoethanolamine transferase EptA/EptB INQ48_20335 PF00884 Sulfatase INQ48_20345 PF14403 Circularly permuted ATP-grasp type 2 INQ48_20350 PF00378 Enoyl-CoA hydratase/isomerase INQ48_20360 PF00589 Phage integrase family INQ48_20370 PF00182 Chitinase class I INQ48_20470 PF00574 Clp protease INQ48_20570 PF01555 DNA methylase INQ48_20645 PF01966 HD domain INQ48_20695 PF03772 Competence protein INQ48_20695 PF00753 Metallo-beta-lactamase superfamily INQ48_20705 PF14403 Circularly permuted ATP-grasp type 2 INQ48_20705 PF04168 A predicted alpha-helical domain with a conserved ER motif. INQ48_20710 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_20715 PF08379 Bacterial transglutaminase-like N-terminal region INQ48_20715 PF01841 Transglutaminase-like superfamily INQ48_20725 PF00034 Cytochrome c INQ48_20745 PF05199 GMC oxidoreductase INQ48_20745 PF00732 GMC oxidoreductase INQ48_20750 PF00356 Bacterial regulatory proteins, lacI family INQ48_20755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_20755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_20760 PF00294 pfkB family carbohydrate kinase INQ48_20770 PF00005 ABC transporter INQ48_20775 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_20780 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20785 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_20800 PF00857 Isochorismatase family INQ48_20805 PF12706 Beta-lactamase superfamily domain INQ48_20815 PF00521 DNA gyrase/topoisomerase IV, subunit A INQ48_20825 PF01464 Transglycosylase SLT domain INQ48_20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_20830 PF00204 DNA gyrase B INQ48_20830 PF01751 Toprim domain INQ48_20830 PF00986 DNA gyrase B subunit, carboxyl terminus INQ48_20850 PF00701 Dihydrodipicolinate synthetase family INQ48_20855 PF06804 NlpB/DapX lipoprotein INQ48_20860 PF00753 Metallo-beta-lactamase superfamily INQ48_20875 PF08007 Cupin superfamily protein INQ48_20880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_20890 PF00692 dUTPase INQ48_20900 PF02441 Flavoprotein INQ48_20900 PF04127 DNA / pantothenate metabolism flavoprotein INQ48_20905 PF06418 CTP synthase N-terminus INQ48_20905 PF00117 Glutamine amidotransferase class-I INQ48_20915 PF03952 Enolase, N-terminal domain INQ48_20915 PF00113 Enolase, C-terminal TIM barrel domain INQ48_20920 PF04977 Septum formation initiator INQ48_20925 PF04973 Nicotinamide mononucleotide transporter INQ48_20940 PF12833 Helix-turn-helix domain INQ48_20955 PF01430 Hsp33 protein INQ48_20960 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_20965 PF04305 Protein of unknown function (DUF455) INQ48_20975 PF02803 Thiolase, C-terminal domain INQ48_20975 PF00108 Thiolase, N-terminal domain INQ48_20985 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_20990 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_20995 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21000 PF00005 ABC transporter INQ48_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_21010 PF03466 LysR substrate binding domain INQ48_21015 PF02899 Phage integrase, N-terminal SAM-like domain INQ48_21015 PF00589 Phage integrase family INQ48_21020 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_21030 PF08267 Cobalamin-independent synthase, N-terminal domain INQ48_21030 PF01717 Cobalamin-independent synthase, Catalytic domain INQ48_21040 PF03358 NADPH-dependent FMN reductase INQ48_21045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_21045 PF03466 LysR substrate binding domain INQ48_21050 PF08331 Domain of unknown function (DUF1730) INQ48_21055 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE INQ48_21060 PF11741 AMIN domain INQ48_21060 PF01520 N-acetylmuramoyl-L-alanine amidase INQ48_21070 PF09335 SNARE associated Golgi protein INQ48_21075 PF01738 Dienelactone hydrolase family INQ48_21080 PF03466 LysR substrate binding domain INQ48_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_21085 PF07690 Major Facilitator Superfamily INQ48_21090 PF00920 Dehydratase family INQ48_21095 PF08676 MutL C terminal dimerisation domain INQ48_21095 PF01119 DNA mismatch repair protein, C-terminal domain INQ48_21105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_21110 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_21110 PF01799 [2Fe-2S] binding domain INQ48_21115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_21120 PF06719 AraC-type transcriptional regulator N-terminus INQ48_21120 PF12833 Helix-turn-helix domain INQ48_21130 PF00005 ABC transporter INQ48_21140 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_21145 PF00873 AcrB/AcrD/AcrF family INQ48_21150 PF00529 HlyD membrane-fusion protein of T1SS INQ48_21150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_21155 PF02321 Outer membrane efflux protein INQ48_21165 PF05721 Phytanoyl-CoA dioxygenase (PhyH) INQ48_21195 PF03747 ADP-ribosylglycohydrolase INQ48_21200 PF01037 Lrp/AsnC ligand binding domain INQ48_21205 PF00266 Aminotransferase class-V INQ48_21215 PF00144 Beta-lactamase INQ48_21230 PF01804 Penicillin amidase INQ48_21245 PF02653 Branched-chain amino acid transport system / permease component INQ48_21260 PF00005 ABC transporter INQ48_21265 PF00005 ABC transporter INQ48_21265 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_21270 PF00857 Isochorismatase family INQ48_21275 PF03466 LysR substrate binding domain INQ48_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_21280 PF07690 Major Facilitator Superfamily INQ48_21285 PF00529 HlyD membrane-fusion protein of T1SS INQ48_21285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_21290 PF02321 Outer membrane efflux protein INQ48_21295 PF01047 MarR family INQ48_21300 PF00664 ABC transporter transmembrane region INQ48_21300 PF00005 ABC transporter INQ48_21310 PF00293 NUDIX domain INQ48_21320 PF00361 Proton-conducting membrane transporter INQ48_21325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus INQ48_21325 PF00361 Proton-conducting membrane transporter INQ48_21330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INQ48_21330 PF00361 Proton-conducting membrane transporter INQ48_21335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INQ48_21340 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 INQ48_21345 PF12838 4Fe-4S dicluster domain INQ48_21350 PF00146 NADH dehydrogenase INQ48_21355 PF00384 Molybdopterin oxidoreductase INQ48_21355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region INQ48_21355 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal INQ48_21360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region INQ48_21360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit INQ48_21360 PF10531 SLBB domain INQ48_21370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit INQ48_21375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit INQ48_21380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit INQ48_21385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 INQ48_21395 PF03840 Preprotein translocase SecG subunit INQ48_21400 PF00121 Triosephosphate isomerase INQ48_21405 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_21405 PF00698 Acyl transferase domain INQ48_21405 PF08659 KR domain INQ48_21405 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_21405 PF14765 Polyketide synthase dehydratase INQ48_21405 PF00107 Zinc-binding dehydrogenase INQ48_21405 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_21405 PF00550 Phosphopantetheine attachment site INQ48_21405 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_21410 PF01138 3' exoribonuclease family, domain 1 INQ48_21410 PF03725 3' exoribonuclease family, domain 2 INQ48_21410 PF00013 KH domain INQ48_21410 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain INQ48_21410 PF00575 S1 RNA binding domain INQ48_21415 PF00312 Ribosomal protein S15 INQ48_21430 PF00155 Aminotransferase class I and II INQ48_21435 PF13458 Periplasmic binding protein INQ48_21445 PF00814 Glycoprotease family INQ48_21450 PF03861 ANTAR domain INQ48_21450 PF08376 Nitrate and nitrite sensing INQ48_21460 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21465 PF00005 ABC transporter INQ48_21470 PF03861 ANTAR domain INQ48_21470 PF00072 Response regulator receiver domain INQ48_21475 PF07690 Major Facilitator Superfamily INQ48_21480 PF00069 Protein kinase domain INQ48_21480 PF03793 PASTA domain INQ48_21490 PF04324 BFD-like [2Fe-2S] binding domain INQ48_21490 PF01568 Molydopterin dinucleotide binding domain INQ48_21490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_21490 PF00384 Molybdopterin oxidoreductase INQ48_21495 PF00591 Glycosyl transferase family, a/b domain INQ48_21495 PF02885 Glycosyl transferase family, helical bundle domain INQ48_21500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases INQ48_21505 PF08402 TOBE domain INQ48_21505 PF00005 ABC transporter INQ48_21515 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21520 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21530 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family INQ48_21540 PF01165 Ribosomal protein S21 INQ48_21550 PF00293 NUDIX domain INQ48_21570 PF01758 Sodium Bile acid symporter family INQ48_21580 PF00106 short chain dehydrogenase INQ48_21585 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_21585 PF00107 Zinc-binding dehydrogenase INQ48_21590 PF17912 MalK OB fold domain INQ48_21590 PF00005 ABC transporter INQ48_21595 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21600 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_21605 PF01547 Bacterial extracellular solute-binding protein INQ48_21610 PF17853 GGDEF-like domain INQ48_21610 PF12833 Helix-turn-helix domain INQ48_21615 PF01523 Putative modulator of DNA gyrase INQ48_21620 PF04751 Protein of unknown function (DUF615) INQ48_21625 PF00994 Probable molybdopterin binding domain INQ48_21635 PF01545 Cation efflux family INQ48_21640 PF00873 AcrB/AcrD/AcrF family INQ48_21645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_21645 PF00529 HlyD membrane-fusion protein of T1SS INQ48_21650 PF02321 Outer membrane efflux protein INQ48_21660 PF00486 Transcriptional regulatory protein, C terminal INQ48_21660 PF00072 Response regulator receiver domain INQ48_21665 PF00672 HAMP domain INQ48_21665 PF00512 His Kinase A (phospho-acceptor) domain INQ48_21665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_21670 PF00561 alpha/beta hydrolase fold INQ48_21680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_21680 PF08521 Two-component sensor kinase N-terminal INQ48_21680 PF00512 His Kinase A (phospho-acceptor) domain INQ48_21685 PF00072 Response regulator receiver domain INQ48_21685 PF00486 Transcriptional regulatory protein, C terminal INQ48_21695 PF00999 Sodium/hydrogen exchanger family INQ48_21710 PF00403 Heavy-metal-associated domain INQ48_21715 PF13411 MerR HTH family regulatory protein INQ48_21725 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_21730 PF00588 SpoU rRNA Methylase family INQ48_21735 PF00459 Inositol monophosphatase family INQ48_21740 PF12805 FUSC-like inner membrane protein yccS INQ48_21750 PF04304 Protein of unknown function (DUF454) INQ48_21755 PF04235 Protein of unknown function (DUF418) INQ48_21775 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_21780 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_21785 PF00884 Sulfatase INQ48_21785 PF16385 Domain of unknown function INQ48_21810 PF13458 Periplasmic binding protein INQ48_21815 PF02653 Branched-chain amino acid transport system / permease component INQ48_21825 PF00005 ABC transporter INQ48_21825 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_21830 PF00005 ABC transporter INQ48_21835 PF05853 beta-keto acid cleavage enzyme INQ48_21840 PF00106 short chain dehydrogenase INQ48_21845 PF07519 Tannase and feruloyl esterase INQ48_21860 PF13673 Acetyltransferase (GNAT) domain INQ48_21860 PF13302 Acetyltransferase (GNAT) domain INQ48_21860 PF00117 Glutamine amidotransferase class-I INQ48_21860 PF00958 GMP synthase C terminal domain INQ48_21860 PF03352 Methyladenine glycosylase INQ48_21870 PF00378 Enoyl-CoA hydratase/isomerase INQ48_21875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_21875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_21875 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_21880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_21880 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_21880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_21885 PF02515 CoA-transferase family III INQ48_21890 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_21895 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_21905 PF02515 CoA-transferase family III INQ48_21910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_21910 PF03466 LysR substrate binding domain INQ48_21925 PF00593 TonB dependent receptor INQ48_21925 PF07715 TonB-dependent Receptor Plug Domain INQ48_21940 PF00005 ABC transporter INQ48_21945 PF00444 Ribosomal protein L36 INQ48_21955 PF03551 Transcriptional regulator PadR-like family INQ48_21960 PF08021 Siderophore-interacting FAD-binding domain INQ48_21960 PF04954 Siderophore-interacting protein INQ48_21965 PF07690 Major Facilitator Superfamily INQ48_21975 PF01544 CorA-like Mg2+ transporter protein INQ48_21980 PF01624 MutS domain I INQ48_21980 PF05188 MutS domain II INQ48_21980 PF05192 MutS domain III INQ48_21980 PF05190 MutS family domain IV INQ48_21980 PF00488 MutS domain V INQ48_21995 PF01965 DJ-1/PfpI family INQ48_22000 PF01965 DJ-1/PfpI family INQ48_22005 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22015 PF00196 Bacterial regulatory proteins, luxR family INQ48_22015 PF00072 Response regulator receiver domain INQ48_22020 PF00672 HAMP domain INQ48_22020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_22020 PF07730 Histidine kinase INQ48_22025 PF02673 Bacitracin resistance protein BacA INQ48_22040 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_22045 PF00202 Aminotransferase class-III INQ48_22050 PF01380 SIS domain INQ48_22050 PF01418 Helix-turn-helix domain, rpiR family INQ48_22060 PF02321 Outer membrane efflux protein INQ48_22065 PF00873 AcrB/AcrD/AcrF family INQ48_22070 PF00873 AcrB/AcrD/AcrF family INQ48_22085 PF04116 Fatty acid hydroxylase superfamily INQ48_22095 PF06580 Histidine kinase INQ48_22095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_22095 PF07694 5TMR of 5TMR-LYT INQ48_22100 PF04397 LytTr DNA-binding domain INQ48_22100 PF00072 Response regulator receiver domain INQ48_22110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain INQ48_22110 PF00749 tRNA synthetases class I (E and Q), catalytic domain INQ48_22130 PF02661 Fic/DOC family INQ48_22130 PF12728 Helix-turn-helix domain INQ48_22145 PF00909 Ammonium Transporter Family INQ48_22150 PF04397 LytTr DNA-binding domain INQ48_22150 PF00072 Response regulator receiver domain INQ48_22175 PF01926 50S ribosome-binding GTPase INQ48_22180 PF00571 CBS domain INQ48_22180 PF01380 SIS domain INQ48_22205 PF00106 short chain dehydrogenase INQ48_22210 PF00072 Response regulator receiver domain INQ48_22215 PF04262 Glutamate-cysteine ligase INQ48_22225 PF02230 Phospholipase/Carboxylesterase INQ48_22235 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22240 PF01494 FAD binding domain INQ48_22245 PF00155 Aminotransferase class I and II INQ48_22250 PF03301 Tryptophan 2,3-dioxygenase INQ48_22255 PF12833 Helix-turn-helix domain INQ48_22255 PF12852 Cupin INQ48_22265 PF02492 CobW/HypB/UreG, nucleotide-binding domain INQ48_22265 PF07683 Cobalamin synthesis protein cobW C-terminal domain INQ48_22275 PF03466 LysR substrate binding domain INQ48_22275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_22280 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22285 PF02515 CoA-transferase family III INQ48_22290 PF00378 Enoyl-CoA hydratase/isomerase INQ48_22295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_22295 PF03466 LysR substrate binding domain INQ48_22300 PF07690 Major Facilitator Superfamily INQ48_22310 PF00378 Enoyl-CoA hydratase/isomerase INQ48_22330 PF05661 Protein of unknown function (DUF808) INQ48_22350 PF09905 DNA-binding protein VF530 INQ48_22355 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_22365 PF00849 RNA pseudouridylate synthase INQ48_22370 PF00582 Universal stress protein family INQ48_22405 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22415 PF10017 Histidine-specific methyltransferase, SAM-dependent INQ48_22420 PF03781 Sulfatase-modifying factor enzyme 1 INQ48_22420 PF12867 DinB superfamily INQ48_22425 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_22440 PF00565 Staphylococcal nuclease homologue INQ48_22450 PF01177 Asp/Glu/Hydantoin racemase INQ48_22455 PF00501 AMP-binding enzyme INQ48_22455 PF13193 AMP-binding enzyme C-terminal domain INQ48_22460 PF02566 OsmC-like protein INQ48_22465 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22475 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_22480 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_22485 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_22490 PF00005 ABC transporter INQ48_22500 PF00583 Acetyltransferase (GNAT) family INQ48_22510 PF03009 Glycerophosphoryl diester phosphodiesterase family INQ48_22530 PF07731 Multicopper oxidase INQ48_22530 PF00394 Multicopper oxidase INQ48_22530 PF07732 Multicopper oxidase INQ48_22560 PF03576 Peptidase family S58 INQ48_22570 PF00425 chorismate binding enzyme INQ48_22570 PF04715 Anthranilate synthase component I, N terminal region INQ48_22575 PF13411 MerR HTH family regulatory protein INQ48_22585 PF00005 ABC transporter INQ48_22585 PF12848 ABC transporter INQ48_22590 PF00270 DEAD/DEAH box helicase INQ48_22590 PF00271 Helicase conserved C-terminal domain INQ48_22600 PF13378 Enolase C-terminal domain-like INQ48_22600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain INQ48_22605 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_22610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_22615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_22620 PF07729 FCD domain INQ48_22620 PF00392 Bacterial regulatory proteins, gntR family INQ48_22625 PF00920 Dehydratase family INQ48_22635 PF01081 KDPG and KHG aldolase INQ48_22640 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_22675 PF01118 Semialdehyde dehydrogenase, NAD binding domain INQ48_22680 PF03466 LysR substrate binding domain INQ48_22680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_22685 PF13416 Bacterial extracellular solute-binding protein INQ48_22695 PF00005 ABC transporter INQ48_22695 PF08402 TOBE domain INQ48_22705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_22725 PF01081 KDPG and KHG aldolase INQ48_22730 PF00920 Dehydratase family INQ48_22745 PF00080 Copper/zinc superoxide dismutase (SODC) INQ48_22755 PF01243 Pyridoxamine 5'-phosphate oxidase INQ48_22755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region INQ48_22770 PF03547 Membrane transport protein INQ48_22775 PF00593 TonB dependent receptor INQ48_22775 PF07715 TonB-dependent Receptor Plug Domain INQ48_22785 PF01625 Peptide methionine sulfoxide reductase INQ48_22790 PF17922 Tetracyclin repressor-like, C-terminal domain INQ48_22790 PF00440 Bacterial regulatory proteins, tetR family INQ48_22815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INQ48_22815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INQ48_22815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INQ48_22815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INQ48_22820 PF02805 Metal binding domain of Ada INQ48_22820 PF12833 Helix-turn-helix domain INQ48_22825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain INQ48_22825 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain INQ48_22830 PF00892 EamA-like transporter family INQ48_22840 PF00034 Cytochrome c INQ48_22845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_22845 PF00034 Cytochrome c INQ48_22850 PF00512 His Kinase A (phospho-acceptor) domain INQ48_22850 PF00672 HAMP domain INQ48_22850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_22855 PF00486 Transcriptional regulatory protein, C terminal INQ48_22855 PF00072 Response regulator receiver domain INQ48_22865 PF02683 Cytochrome C biogenesis protein transmembrane region INQ48_22865 PF00578 AhpC/TSA family INQ48_22865 PF17991 Thioredoxin like C-terminal domain INQ48_22875 PF00501 AMP-binding enzyme INQ48_22875 PF13193 AMP-binding enzyme C-terminal domain INQ48_22880 PF03435 Saccharopine dehydrogenase NADP binding domain INQ48_22895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_22895 PF03466 LysR substrate binding domain INQ48_22900 PF07519 Tannase and feruloyl esterase INQ48_22905 PF01565 FAD binding domain INQ48_22905 PF02913 FAD linked oxidases, C-terminal domain INQ48_22910 PF07690 Major Facilitator Superfamily INQ48_22920 PF01546 Peptidase family M20/M25/M40 INQ48_22920 PF07687 Peptidase dimerisation domain INQ48_22930 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_22935 PF00067 Cytochrome P450 INQ48_22940 PF01804 Penicillin amidase INQ48_22945 PF02321 Outer membrane efflux protein INQ48_22950 PF00005 ABC transporter INQ48_22950 PF02687 FtsX-like permease family INQ48_22950 PF12704 MacB-like periplasmic core domain INQ48_22955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_22960 PF00005 ABC transporter INQ48_22960 PF00664 ABC transporter transmembrane region INQ48_22975 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) INQ48_22990 PF07715 TonB-dependent Receptor Plug Domain INQ48_22990 PF00593 TonB dependent receptor INQ48_22995 PF01497 Periplasmic binding protein INQ48_23000 PF01032 FecCD transport family INQ48_23005 PF08021 Siderophore-interacting FAD-binding domain INQ48_23005 PF04954 Siderophore-interacting protein INQ48_23010 PF00005 ABC transporter INQ48_23015 PF13193 AMP-binding enzyme C-terminal domain INQ48_23015 PF00501 AMP-binding enzyme INQ48_23015 PF00668 Condensation domain INQ48_23015 PF00550 Phosphopantetheine attachment site INQ48_23015 PF00975 Thioesterase domain INQ48_23035 PF00550 Phosphopantetheine attachment site INQ48_23035 PF13193 AMP-binding enzyme C-terminal domain INQ48_23035 PF00668 Condensation domain INQ48_23035 PF00501 AMP-binding enzyme INQ48_23035 PF07993 Male sterility protein INQ48_23040 PF00550 Phosphopantetheine attachment site INQ48_23040 PF13193 AMP-binding enzyme C-terminal domain INQ48_23040 PF07993 Male sterility protein INQ48_23040 PF00668 Condensation domain INQ48_23040 PF00501 AMP-binding enzyme INQ48_23045 PF00550 Phosphopantetheine attachment site INQ48_23045 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_23045 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_23045 PF00698 Acyl transferase domain INQ48_23045 PF00668 Condensation domain INQ48_23045 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_23050 PF00668 Condensation domain INQ48_23050 PF13193 AMP-binding enzyme C-terminal domain INQ48_23050 PF00550 Phosphopantetheine attachment site INQ48_23050 PF00501 AMP-binding enzyme INQ48_23050 PF00975 Thioesterase domain INQ48_23055 PF00550 Phosphopantetheine attachment site INQ48_23055 PF00501 AMP-binding enzyme INQ48_23055 PF00975 Thioesterase domain INQ48_23055 PF13193 AMP-binding enzyme C-terminal domain INQ48_23055 PF00668 Condensation domain INQ48_23060 PF00698 Acyl transferase domain INQ48_23060 PF00668 Condensation domain INQ48_23060 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_23060 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_23060 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_23060 PF00550 Phosphopantetheine attachment site INQ48_23065 PF13193 AMP-binding enzyme C-terminal domain INQ48_23065 PF00668 Condensation domain INQ48_23065 PF07993 Male sterility protein INQ48_23065 PF00550 Phosphopantetheine attachment site INQ48_23065 PF00501 AMP-binding enzyme INQ48_23070 PF13193 AMP-binding enzyme C-terminal domain INQ48_23070 PF00975 Thioesterase domain INQ48_23070 PF00550 Phosphopantetheine attachment site INQ48_23070 PF00668 Condensation domain INQ48_23070 PF00501 AMP-binding enzyme INQ48_23075 PF03621 MbtH-like protein INQ48_23085 PF08281 Sigma-70, region 4 INQ48_23085 PF04542 Sigma-70 region 2 INQ48_23100 PF00106 short chain dehydrogenase INQ48_23105 PF12833 Helix-turn-helix domain INQ48_23105 PF12852 Cupin INQ48_23125 PF00749 tRNA synthetases class I (E and Q), catalytic domain INQ48_23130 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_23135 PF00156 Phosphoribosyl transferase domain INQ48_23150 PF08245 Mur ligase middle domain INQ48_23150 PF02875 Mur ligase family, glutamate ligase domain INQ48_23155 PF03960 ArsC family INQ48_23165 PF06865 Pyrimidine/purine nucleoside phosphorylase INQ48_23170 PF00764 Arginosuccinate synthase INQ48_23180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain INQ48_23180 PF01565 FAD binding domain INQ48_23185 PF04461 Protein of unknown function (DUF520) INQ48_23195 PF01042 Endoribonuclease L-PSP INQ48_23200 PF02660 Glycerol-3-phosphate acyltransferase INQ48_23205 PF04073 Aminoacyl-tRNA editing domain INQ48_23210 PF00248 Aldo/keto reductase family INQ48_23215 PF00561 alpha/beta hydrolase fold INQ48_23220 PF01177 Asp/Glu/Hydantoin racemase INQ48_23225 PF03180 NLPA lipoprotein INQ48_23230 PF00296 Luciferase-like monooxygenase INQ48_23240 PF03180 NLPA lipoprotein INQ48_23245 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23250 PF00005 ABC transporter INQ48_23250 PF09383 NIL domain INQ48_23255 PF03180 NLPA lipoprotein INQ48_23265 PF13419 Haloacid dehalogenase-like hydrolase INQ48_23270 PF01433 Peptidase family M1 domain INQ48_23270 PF17432 Domain of unknown function (DUF3458_C) ARM repeats INQ48_23270 PF11940 Domain of unknown function (DUF3458) Ig-like fold INQ48_23275 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain INQ48_23290 PF01844 HNH endonuclease INQ48_23315 PF02146 Sir2 family INQ48_23325 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23330 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23340 PF00356 Bacterial regulatory proteins, lacI family INQ48_23345 PF01515 Phosphate acetyl/butaryl transferase INQ48_23355 PF00135 Carboxylesterase family INQ48_23370 PF04976 DMSO reductase anchor subunit (DmsC) INQ48_23375 PF13247 4Fe-4S dicluster domain INQ48_23375 PF12800 4Fe-4S binding domain INQ48_23380 PF00384 Molybdopterin oxidoreductase INQ48_23380 PF01568 Molydopterin dinucleotide binding domain INQ48_23380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_23385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23385 PF03466 LysR substrate binding domain INQ48_23390 PF00871 Acetokinase family INQ48_23395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_23395 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_23395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_23400 PF09339 IclR helix-turn-helix domain INQ48_23400 PF01614 Bacterial transcriptional regulator INQ48_23405 PF08406 CbbQ/NirQ/NorQ C-terminal INQ48_23405 PF12556 Cobaltochelatase CobS subunit N terminal INQ48_23405 PF07728 AAA domain (dynein-related subfamily) INQ48_23410 PF06213 Cobalamin biosynthesis protein CobT INQ48_23410 PF11775 Cobalamin biosynthesis protein CobT VWA domain INQ48_23420 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_23425 PF00171 Aldehyde dehydrogenase family INQ48_23430 PF13193 AMP-binding enzyme C-terminal domain INQ48_23430 PF00501 AMP-binding enzyme INQ48_23455 PF03358 NADPH-dependent FMN reductase INQ48_23470 PF09339 IclR helix-turn-helix domain INQ48_23470 PF01614 Bacterial transcriptional regulator INQ48_23475 PF00732 GMC oxidoreductase INQ48_23475 PF05199 GMC oxidoreductase INQ48_23480 PF00083 Sugar (and other) transporter INQ48_23480 PF07690 Major Facilitator Superfamily INQ48_23485 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_23490 PF00202 Aminotransferase class-III INQ48_23525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23525 PF03466 LysR substrate binding domain INQ48_23530 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23535 PF00005 ABC transporter INQ48_23540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system INQ48_23545 PF13936 Helix-turn-helix domain INQ48_23545 PF00665 Integrase core domain INQ48_23555 PF05995 Cysteine dioxygenase type I INQ48_23560 PF09084 NMT1/THI5 like INQ48_23565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_23565 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_23565 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_23570 PF00296 Luciferase-like monooxygenase INQ48_23575 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_23580 PF09084 NMT1/THI5 like INQ48_23585 PF09084 NMT1/THI5 like INQ48_23600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23600 PF03466 LysR substrate binding domain INQ48_23605 PF01546 Peptidase family M20/M25/M40 INQ48_23610 PF00149 Calcineurin-like phosphoesterase INQ48_23615 PF01595 Cyclin M transmembrane N-terminal domain INQ48_23615 PF03471 Transporter associated domain INQ48_23615 PF00571 CBS domain INQ48_23630 PF00709 Adenylosuccinate synthetase INQ48_23635 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_23640 PF03741 Integral membrane protein TerC family INQ48_23645 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_23670 PF02492 CobW/HypB/UreG, nucleotide-binding domain INQ48_23670 PF07683 Cobalamin synthesis protein cobW C-terminal domain INQ48_23675 PF01979 Amidohydrolase family INQ48_23680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_23680 PF00005 ABC transporter INQ48_23685 PF00005 ABC transporter INQ48_23685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_23690 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23690 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_23695 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_23715 PF00392 Bacterial regulatory proteins, gntR family INQ48_23715 PF00155 Aminotransferase class I and II INQ48_23720 PF00270 DEAD/DEAH box helicase INQ48_23720 PF00271 Helicase conserved C-terminal domain INQ48_23725 PF04228 Putative neutral zinc metallopeptidase INQ48_23730 PF00692 dUTPase INQ48_23735 PF01979 Amidohydrolase family INQ48_23740 PF02082 Transcriptional regulator INQ48_23745 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_23755 PF07690 Major Facilitator Superfamily INQ48_23760 PF01804 Penicillin amidase INQ48_23765 PF12833 Helix-turn-helix domain INQ48_23765 PF02311 AraC-like ligand binding domain INQ48_23770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23770 PF03466 LysR substrate binding domain INQ48_23780 PF00962 Adenosine/AMP deaminase INQ48_23790 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_23795 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_23800 PF00005 ABC transporter INQ48_23805 PF01266 FAD dependent oxidoreductase INQ48_23855 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_23865 PF02653 Branched-chain amino acid transport system / permease component INQ48_23870 PF00005 ABC transporter INQ48_23875 PF00860 Permease family INQ48_23880 PF03466 LysR substrate binding domain INQ48_23880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23885 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_23885 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_23890 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_23890 PF01799 [2Fe-2S] binding domain INQ48_23895 PF07005 Sugar-binding N-terminal domain INQ48_23895 PF17042 Nucleotide-binding C-terminal domain INQ48_23900 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain INQ48_23900 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain INQ48_23910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_23915 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_23920 PF00356 Bacterial regulatory proteins, lacI family INQ48_23925 PF03466 LysR substrate binding domain INQ48_23925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_23930 PF07995 Glucose / Sorbosone dehydrogenase INQ48_23935 PF00034 Cytochrome c INQ48_23950 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_23965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_23975 PF01451 Low molecular weight phosphotyrosine protein phosphatase INQ48_23990 PF00690 Cation transporter/ATPase, N-terminus INQ48_23990 PF00689 Cation transporting ATPase, C-terminus INQ48_23995 PF02308 MgtC family INQ48_24000 PF00171 Aldehyde dehydrogenase family INQ48_24005 PF13660 Domain of unknown function (DUF4147) INQ48_24005 PF05161 MOFRL family INQ48_24025 PF00576 HIUase/Transthyretin family INQ48_24030 PF07729 FCD domain INQ48_24030 PF00392 Bacterial regulatory proteins, gntR family INQ48_24040 PF01546 Peptidase family M20/M25/M40 INQ48_24040 PF07687 Peptidase dimerisation domain INQ48_24045 PF07687 Peptidase dimerisation domain INQ48_24045 PF01546 Peptidase family M20/M25/M40 INQ48_24065 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_24070 PF03466 LysR substrate binding domain INQ48_24070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24080 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin INQ48_24085 PF01177 Asp/Glu/Hydantoin racemase INQ48_24100 PF16363 GDP-mannose 4,6 dehydratase INQ48_24105 PF00860 Permease family INQ48_24110 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_24115 PF00005 ABC transporter INQ48_24120 PF09084 NMT1/THI5 like INQ48_24125 PF02538 Hydantoinase B/oxoprolinase INQ48_24130 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_24130 PF01968 Hydantoinase/oxoprolinase INQ48_24135 PF00440 Bacterial regulatory proteins, tetR family INQ48_24140 PF00248 Aldo/keto reductase family INQ48_24145 PF02954 Bacterial regulatory protein, Fis family INQ48_24145 PF00158 Sigma-54 interaction domain INQ48_24145 PF00072 Response regulator receiver domain INQ48_24150 PF02743 Cache domain INQ48_24150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24150 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24155 PF00375 Sodium:dicarboxylate symporter family INQ48_24165 PF03060 Nitronate monooxygenase INQ48_24170 PF02515 CoA-transferase family III INQ48_24175 PF13380 CoA binding domain INQ48_24175 PF13607 Succinyl-CoA ligase like flavodoxin domain INQ48_24180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_24180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_24180 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_24190 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_24200 PF02803 Thiolase, C-terminal domain INQ48_24200 PF00108 Thiolase, N-terminal domain INQ48_24205 PF00378 Enoyl-CoA hydratase/isomerase INQ48_24215 PF00990 Diguanylate cyclase, GGDEF domain INQ48_24215 PF08448 PAS fold INQ48_24225 PF02735 Ku70/Ku80 beta-barrel domain INQ48_24240 PF00072 Response regulator receiver domain INQ48_24240 PF00196 Bacterial regulatory proteins, luxR family INQ48_24245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24245 PF00072 Response regulator receiver domain INQ48_24245 PF09456 RcsC Alpha-Beta-Loop (ABL) INQ48_24245 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_24260 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_24265 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_24275 PF03466 LysR substrate binding domain INQ48_24275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24280 PF00375 Sodium:dicarboxylate symporter family INQ48_24290 PF01594 AI-2E family transporter INQ48_24305 PF03466 LysR substrate binding domain INQ48_24305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_24310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_24310 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_24315 PF01261 Xylose isomerase-like TIM barrel INQ48_24320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_24320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_24325 PF04820 Tryptophan halogenase INQ48_24330 PF03949 Malic enzyme, NAD binding domain INQ48_24330 PF00390 Malic enzyme, N-terminal domain INQ48_24330 PF01515 Phosphate acetyl/butaryl transferase INQ48_24355 PF00005 ABC transporter INQ48_24360 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_24370 PF13649 Methyltransferase domain INQ48_24375 PF13411 MerR HTH family regulatory protein INQ48_24390 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24395 PF00486 Transcriptional regulatory protein, C terminal INQ48_24395 PF00072 Response regulator receiver domain INQ48_24410 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24415 PF00486 Transcriptional regulatory protein, C terminal INQ48_24415 PF00072 Response regulator receiver domain INQ48_24430 PF01638 HxlR-like helix-turn-helix INQ48_24450 PF01037 Lrp/AsnC ligand binding domain INQ48_24455 PF01266 FAD dependent oxidoreductase INQ48_24460 PF00355 Rieske [2Fe-2S] domain INQ48_24470 PF14437 MafB19-like deaminase INQ48_24475 PF01774 UreD urease accessory protein INQ48_24480 PF00563 EAL domain INQ48_24480 PF03707 Bacterial signalling protein N terminal repeat INQ48_24480 PF00990 Diguanylate cyclase, GGDEF domain INQ48_24485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24485 PF03466 LysR substrate binding domain INQ48_24500 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_24505 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_24525 PF01476 LysM domain INQ48_24525 PF01551 Peptidase family M23 INQ48_24550 PF03033 Glycosyltransferase family 28 N-terminal domain INQ48_24555 PF00440 Bacterial regulatory proteins, tetR family INQ48_24555 PF17754 MftR C-terminal domain INQ48_24560 PF13018 Extended Signal Peptide of Type V secretion system INQ48_24560 PF05658 Head domain of trimeric autotransporter adhesin INQ48_24560 PF05662 Coiled stalk of trimeric autotransporter adhesin INQ48_24560 PF03895 YadA-like membrane anchor domain INQ48_24570 PF00583 Acetyltransferase (GNAT) family INQ48_24575 PF02146 Sir2 family INQ48_24580 PF04328 Selenoprotein, putative INQ48_24585 PF13722 5TM C-terminal transporter carbon starvation CstA INQ48_24585 PF02554 Carbon starvation protein CstA INQ48_24590 PF00877 NlpC/P60 family INQ48_24595 PF00216 Bacterial DNA-binding protein INQ48_24600 PF00196 Bacterial regulatory proteins, luxR family INQ48_24600 PF00072 Response regulator receiver domain INQ48_24605 PF17200 Single Cache domain 2 INQ48_24605 PF07730 Histidine kinase INQ48_24610 PF01636 Phosphotransferase enzyme family INQ48_24620 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24620 PF00672 HAMP domain INQ48_24620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24625 PF00072 Response regulator receiver domain INQ48_24625 PF00486 Transcriptional regulatory protein, C terminal INQ48_24630 PF00873 AcrB/AcrD/AcrF family INQ48_24635 PF13533 Biotin-lipoyl like INQ48_24640 PF02321 Outer membrane efflux protein INQ48_24640 PF08139 Prokaryotic membrane lipoprotein lipid attachment site INQ48_24645 PF00248 Aldo/keto reductase family INQ48_24660 PF07690 Major Facilitator Superfamily INQ48_24665 PF00378 Enoyl-CoA hydratase/isomerase INQ48_24670 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_24675 PF02515 CoA-transferase family III INQ48_24680 PF00378 Enoyl-CoA hydratase/isomerase INQ48_24690 PF00005 ABC transporter INQ48_24695 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_24695 PF00005 ABC transporter INQ48_24705 PF02653 Branched-chain amino acid transport system / permease component INQ48_24730 PF07690 Major Facilitator Superfamily INQ48_24740 PF03976 Polyphosphate kinase 2 (PPK2) INQ48_24745 PF01384 Phosphate transporter family INQ48_24755 PF02811 PHP domain INQ48_24765 PF01300 Telomere recombination INQ48_24770 PF02163 Peptidase family M50 INQ48_24775 PF00579 tRNA synthetases class I (W and Y) INQ48_24780 PF00196 Bacterial regulatory proteins, luxR family INQ48_24780 PF00072 Response regulator receiver domain INQ48_24785 PF00072 Response regulator receiver domain INQ48_24785 PF01627 Hpt domain INQ48_24785 PF00512 His Kinase A (phospho-acceptor) domain INQ48_24785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_24785 PF00672 HAMP domain INQ48_24795 PF00392 Bacterial regulatory proteins, gntR family INQ48_24795 PF00155 Aminotransferase class I and II INQ48_24805 PF00795 Carbon-nitrogen hydrolase INQ48_24820 PF02769 AIR synthase related protein, C-terminal domain INQ48_24820 PF00586 AIR synthase related protein, N-terminal domain INQ48_24835 PF03466 LysR substrate binding domain INQ48_24835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24840 PF07690 Major Facilitator Superfamily INQ48_24875 PF00202 Aminotransferase class-III INQ48_24880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24880 PF03466 LysR substrate binding domain INQ48_24890 PF00440 Bacterial regulatory proteins, tetR family INQ48_24895 PF07687 Peptidase dimerisation domain INQ48_24895 PF01546 Peptidase family M20/M25/M40 INQ48_24905 PF03466 LysR substrate binding domain INQ48_24905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_24925 PF00717 Peptidase S24-like INQ48_24930 PF11798 IMS family HHH motif INQ48_24930 PF11799 impB/mucB/samB family C-terminal domain INQ48_24930 PF00817 impB/mucB/samB family INQ48_24930 PF13438 Domain of unknown function (DUF4113) INQ48_25075 PF02413 Caudovirales tail fibre assembly protein, lambda gpK INQ48_25210 PF00589 Phage integrase family INQ48_25210 PF13356 Arm DNA-binding domain INQ48_25210 PF14659 Phage integrase, N-terminal SAM-like domain INQ48_25220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INQ48_25220 PF02403 Seryl-tRNA synthetase N-terminal domain INQ48_25225 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_25230 PF02401 LytB protein INQ48_25235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_25240 PF04002 RadC-like JAB domain INQ48_25245 PF01713 Smr domain INQ48_25250 PF00149 Calcineurin-like phosphoesterase INQ48_25250 PF02872 5'-nucleotidase, C-terminal domain INQ48_25255 PF14759 Reductase C-terminal INQ48_25255 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_25265 PF07055 Enoyl reductase FAD binding domain INQ48_25265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase INQ48_25265 PF12241 Trans-2-enoyl-CoA reductase catalytic region INQ48_25270 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_25275 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25280 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25285 PF00005 ABC transporter INQ48_25300 PF13419 Haloacid dehalogenase-like hydrolase INQ48_25305 PF00083 Sugar (and other) transporter INQ48_25305 PF07690 Major Facilitator Superfamily INQ48_25310 PF06481 COX Aromatic Rich Motif INQ48_25310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain INQ48_25315 PF00115 Cytochrome C and Quinol oxidase polypeptide I INQ48_25320 PF00510 Cytochrome c oxidase subunit III INQ48_25325 PF03626 Prokaryotic Cytochrome C oxidase subunit IV INQ48_25335 PF00512 His Kinase A (phospho-acceptor) domain INQ48_25335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_25340 PF00072 Response regulator receiver domain INQ48_25345 PF03006 Haemolysin-III related INQ48_25350 PF04102 SlyX INQ48_25365 PF03466 LysR substrate binding domain INQ48_25365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_25370 PF04717 Type VI secretion system, phage-baseplate injector INQ48_25370 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_25390 PF07690 Major Facilitator Superfamily INQ48_25395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_25395 PF03466 LysR substrate binding domain INQ48_25410 PF00586 AIR synthase related protein, N-terminal domain INQ48_25410 PF02769 AIR synthase related protein, C-terminal domain INQ48_25420 PF00005 ABC transporter INQ48_25425 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25430 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25435 PF00581 Rhodanese-like domain INQ48_25440 PF02634 FdhD/NarQ family INQ48_25450 PF00384 Molybdopterin oxidoreductase INQ48_25455 PF03466 LysR substrate binding domain INQ48_25455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_25465 PF00005 ABC transporter INQ48_25465 PF03459 TOBE domain INQ48_25475 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25485 PF00881 Nitroreductase family INQ48_25490 PF01980 tRNA-methyltransferase O INQ48_25495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_25495 PF03459 TOBE domain INQ48_25505 PF07690 Major Facilitator Superfamily INQ48_25510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_25510 PF03466 LysR substrate binding domain INQ48_25515 PF10609 NUBPL iron-transfer P-loop NTPase INQ48_25525 PF04337 Protein of unknown function, DUF480 INQ48_25535 PF18324 Hypothetical protein TT1725 INQ48_25535 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_25540 PF01588 Putative tRNA binding domain INQ48_25540 PF09334 tRNA synthetases class I (M) INQ48_25555 PF01425 Amidase INQ48_25560 PF13018 Extended Signal Peptide of Type V secretion system INQ48_25560 PF03797 Autotransporter beta-domain INQ48_25560 PF16168 Adhesin of bacterial autotransporter system, probable stalk INQ48_25570 PF00196 Bacterial regulatory proteins, luxR family INQ48_25570 PF00072 Response regulator receiver domain INQ48_25585 PF02616 Segregation and condensation protein ScpA INQ48_25590 PF00890 FAD binding domain INQ48_25590 PF02910 Fumarate reductase flavoprotein C-term INQ48_25595 PF02548 Ketopantoate hydroxymethyltransferase INQ48_25600 PF02569 Pantoate-beta-alanine ligase INQ48_25620 PF02445 Quinolinate synthetase A protein INQ48_25625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain INQ48_25625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain INQ48_25630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus INQ48_25630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus INQ48_25635 PF02556 Preprotein translocase subunit SecB INQ48_25640 PF00462 Glutaredoxin INQ48_25645 PF00581 Rhodanese-like domain INQ48_25650 PF00300 Histidine phosphatase superfamily (branch 1) INQ48_25655 PF03572 Peptidase family S41 INQ48_25655 PF13180 PDZ domain INQ48_25660 PF00899 ThiF family INQ48_25665 PF05170 AsmA family INQ48_25675 PF00196 Bacterial regulatory proteins, luxR family INQ48_25675 PF00072 Response regulator receiver domain INQ48_25680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_25680 PF07730 Histidine kinase INQ48_25680 PF05231 MASE1 INQ48_25710 PF04972 BON domain INQ48_25735 PF01227 GTP cyclohydrolase I INQ48_25740 PF03372 Endonuclease/Exonuclease/phosphatase family INQ48_25745 PF00293 NUDIX domain INQ48_25760 PF02938 GAD domain INQ48_25760 PF00152 tRNA synthetases class II (D, K and N) INQ48_25760 PF01336 OB-fold nucleic acid binding domain INQ48_25775 PF00474 Sodium:solute symporter family INQ48_25780 PF03109 ABC1 family INQ48_25795 PF01209 ubiE/COQ5 methyltransferase family INQ48_25815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_25815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_25820 PF13416 Bacterial extracellular solute-binding protein INQ48_25825 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25830 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_25835 PF17912 MalK OB fold domain INQ48_25835 PF00005 ABC transporter INQ48_25840 PF03009 Glycerophosphoryl diester phosphodiesterase family INQ48_25845 PF12794 Mechanosensitive ion channel inner membrane domain 1 INQ48_25845 PF00924 Mechanosensitive ion channel INQ48_25845 PF12795 Mechanosensitive ion channel porin domain INQ48_25850 PF01037 Lrp/AsnC ligand binding domain INQ48_25860 PF02653 Branched-chain amino acid transport system / permease component INQ48_25865 PF00005 ABC transporter INQ48_25880 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain INQ48_25880 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain INQ48_25880 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_25885 PF03462 PCRF domain INQ48_25885 PF00472 RF-1 domain INQ48_25890 PF17827 PrmC N-terminal domain INQ48_25890 PF05175 Methyltransferase small domain INQ48_25895 PF00462 Glutaredoxin INQ48_25905 PF00571 CBS domain INQ48_25905 PF03471 Transporter associated domain INQ48_25905 PF01595 Cyclin M transmembrane N-terminal domain INQ48_25910 PF01464 Transglycosylase SLT domain INQ48_25910 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain INQ48_25915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INQ48_25915 PF04073 Aminoacyl-tRNA editing domain INQ48_25915 PF03129 Anticodon binding domain INQ48_25920 PF00293 NUDIX domain INQ48_25930 PF01472 PUA domain INQ48_25930 PF00696 Amino acid kinase family INQ48_25935 PF01926 50S ribosome-binding GTPase INQ48_25935 PF01018 GTP1/OBG INQ48_25940 PF01016 Ribosomal L27 protein INQ48_25945 PF00829 Ribosomal prokaryotic L21 protein INQ48_25950 PF00348 Polyprenyl synthetase INQ48_25960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain INQ48_25960 PF00437 Type II/IV secretion system protein INQ48_25965 PF00482 Type II secretion system (T2SS), protein F INQ48_25970 PF01478 Type IV leader peptidase family INQ48_25970 PF06750 Bacterial Peptidase A24 N-terminal domain INQ48_25975 PF01121 Dephospho-CoA kinase INQ48_25980 PF03062 MBOAT, membrane-bound O-acyltransferase family INQ48_25990 PF07072 Cell division protein INQ48_25995 PF03884 DNA gyrase inhibitor YacG INQ48_26000 PF00293 NUDIX domain INQ48_26010 PF01960 ArgJ family INQ48_26015 PF07516 SecA Wing and Scaffold domain INQ48_26015 PF02810 SEC-C motif INQ48_26015 PF07517 SecA DEAD-like domain INQ48_26015 PF01043 SecA preprotein cross-linking domain INQ48_26025 PF02423 Ornithine cyclodeaminase/mu-crystallin family INQ48_26030 PF14031 Putative serine dehydratase domain INQ48_26030 PF01168 Alanine racemase, N-terminal domain INQ48_26035 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_26040 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_26045 PF08348 YheO-like PAS domain INQ48_26045 PF13309 HTH domain INQ48_26050 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26055 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_26060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26060 PF03466 LysR substrate binding domain INQ48_26065 PF00561 alpha/beta hydrolase fold INQ48_26080 PF00072 Response regulator receiver domain INQ48_26085 PF00512 His Kinase A (phospho-acceptor) domain INQ48_26085 PF01627 Hpt domain INQ48_26085 PF00072 Response regulator receiver domain INQ48_26085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_26090 PF00547 Urease, gamma subunit INQ48_26100 PF00699 Urease beta subunit INQ48_26105 PF00449 Urease alpha-subunit, N-terminal domain INQ48_26105 PF01979 Amidohydrolase family INQ48_26110 PF02814 UreE urease accessory protein, N-terminal domain INQ48_26110 PF05194 UreE urease accessory protein, C-terminal domain INQ48_26115 PF01730 UreF INQ48_26120 PF02492 CobW/HypB/UreG, nucleotide-binding domain INQ48_26135 PF13532 2OG-Fe(II) oxygenase superfamily INQ48_26140 PF03060 Nitronate monooxygenase INQ48_26145 PF00106 short chain dehydrogenase INQ48_26155 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_26155 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_26155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_26170 PF07729 FCD domain INQ48_26170 PF00392 Bacterial regulatory proteins, gntR family INQ48_26180 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_26185 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_26190 PF08402 TOBE domain INQ48_26190 PF00005 ABC transporter INQ48_26195 PF00202 Aminotransferase class-III INQ48_26200 PF07005 Sugar-binding N-terminal domain INQ48_26200 PF17042 Nucleotide-binding C-terminal domain INQ48_26205 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_26210 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26215 PF00989 PAS fold INQ48_26215 PF00512 His Kinase A (phospho-acceptor) domain INQ48_26215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_26220 PF00072 Response regulator receiver domain INQ48_26220 PF00196 Bacterial regulatory proteins, luxR family INQ48_26225 PF00083 Sugar (and other) transporter INQ48_26235 PF01596 O-methyltransferase INQ48_26240 PF07690 Major Facilitator Superfamily INQ48_26245 PF00216 Bacterial DNA-binding protein INQ48_26250 PF03466 LysR substrate binding domain INQ48_26250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26255 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26265 PF00171 Aldehyde dehydrogenase family INQ48_26270 PF03466 LysR substrate binding domain INQ48_26270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26275 PF04909 Amidohydrolase INQ48_26280 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26285 PF13183 4Fe-4S dicluster domain INQ48_26285 PF02913 FAD linked oxidases, C-terminal domain INQ48_26285 PF01565 FAD binding domain INQ48_26290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26290 PF03466 LysR substrate binding domain INQ48_26295 PF04371 Porphyromonas-type peptidyl-arginine deiminase INQ48_26300 PF04371 Porphyromonas-type peptidyl-arginine deiminase INQ48_26305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_26305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_26310 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_26310 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_26315 PF10518 TAT (twin-arginine translocation) pathway signal sequence INQ48_26315 PF01799 [2Fe-2S] binding domain INQ48_26315 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_26325 PF04055 Radical SAM superfamily INQ48_26325 PF06969 HemN C-terminal domain INQ48_26330 PF01725 Ham1 family INQ48_26335 PF01138 3' exoribonuclease family, domain 1 INQ48_26335 PF03725 3' exoribonuclease family, domain 2 INQ48_26345 PF03793 PASTA domain INQ48_26345 PF00069 Protein kinase domain INQ48_26350 PF03755 YicC-like family, N-terminal region INQ48_26350 PF08340 Domain of unknown function (DUF1732) INQ48_26355 PF00625 Guanylate kinase INQ48_26360 PF01192 RNA polymerase Rpb6 INQ48_26365 PF13291 ACT domain INQ48_26365 PF04607 Region found in RelA / SpoT proteins INQ48_26365 PF02824 TGS domain INQ48_26370 PF01272 Transcription elongation factor, GreA/GreB, C-term INQ48_26370 PF03449 Transcription elongation factor, N-terminal INQ48_26385 PF01628 HrcA protein C terminal domain INQ48_26385 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding INQ48_26390 PF01513 ATP-NAD kinase INQ48_26395 PF02463 RecF/RecN/SMC N terminal domain INQ48_26400 PF03668 P-loop ATPase protein family INQ48_26405 PF00633 Helix-hairpin-helix motif INQ48_26405 PF00730 HhH-GPD superfamily base excision DNA repair protein INQ48_26405 PF14815 NUDIX domain INQ48_26410 PF00350 Dynamin family INQ48_26415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain INQ48_26415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain INQ48_26415 PF06827 Zinc finger found in FPG and IleRS INQ48_26430 PF00288 GHMP kinases N terminal domain INQ48_26430 PF08544 GHMP kinases C terminal INQ48_26440 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase INQ48_26440 PF14572 Phosphoribosyl synthetase-associated domain INQ48_26445 PF01386 Ribosomal L25p family INQ48_26445 PF14693 Ribosomal protein TL5, C-terminal domain INQ48_26465 PF01195 Peptidyl-tRNA hydrolase INQ48_26475 PF00037 4Fe-4S binding domain INQ48_26480 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_26485 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_26485 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_26490 PF00005 ABC transporter INQ48_26490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_26495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_26495 PF00005 ABC transporter INQ48_26500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_26505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_26510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26510 PF03466 LysR substrate binding domain INQ48_26525 PF07969 Amidohydrolase family INQ48_26530 PF00300 Histidine phosphatase superfamily (branch 1) INQ48_26540 PF12697 Alpha/beta hydrolase family INQ48_26545 PF01470 Pyroglutamyl peptidase INQ48_26560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26560 PF03466 LysR substrate binding domain INQ48_26565 PF03746 LamB/YcsF family INQ48_26570 PF02626 Carboxyltransferase domain, subdomain A and B INQ48_26575 PF02682 Carboxyltransferase domain, subdomain C and D INQ48_26580 PF01467 Cytidylyltransferase-like INQ48_26590 PF01810 LysE type translocator INQ48_26595 PF03466 LysR substrate binding domain INQ48_26595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26600 PF05193 Peptidase M16 inactive domain INQ48_26605 PF05193 Peptidase M16 inactive domain INQ48_26605 PF00675 Insulinase (Peptidase family M16) INQ48_26610 PF00448 SRP54-type protein, GTPase domain INQ48_26610 PF02881 SRP54-type protein, helical bundle domain INQ48_26615 PF00072 Response regulator receiver domain INQ48_26615 PF09456 RcsC Alpha-Beta-Loop (ABL) INQ48_26615 PF00512 His Kinase A (phospho-acceptor) domain INQ48_26615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_26620 PF00072 Response regulator receiver domain INQ48_26620 PF00196 Bacterial regulatory proteins, luxR family INQ48_26630 PF00140 Sigma-70 factor, region 1.2 INQ48_26630 PF04545 Sigma-70, region 4 INQ48_26630 PF04542 Sigma-70 region 2 INQ48_26635 PF08713 DNA alkylation repair enzyme INQ48_26640 PF02630 SCO1/SenC INQ48_26645 PF01040 UbiA prenyltransferase family INQ48_26670 PF00510 Cytochrome c oxidase subunit III INQ48_26680 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 INQ48_26685 PF00115 Cytochrome C and Quinol oxidase polypeptide I INQ48_26690 PF02790 Cytochrome C oxidase subunit II, transmembrane domain INQ48_26690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain INQ48_26700 PF08241 Methyltransferase domain INQ48_26705 PF00156 Phosphoribosyl transferase domain INQ48_26710 PF00588 SpoU rRNA Methylase family INQ48_26720 PF01575 MaoC like domain INQ48_26730 PF02525 Flavodoxin-like fold INQ48_26735 PF00999 Sodium/hydrogen exchanger family INQ48_26735 PF02254 TrkA-N domain INQ48_26745 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26760 PF00378 Enoyl-CoA hydratase/isomerase INQ48_26765 PF00501 AMP-binding enzyme INQ48_26765 PF07993 Male sterility protein INQ48_26765 PF00550 Phosphopantetheine attachment site INQ48_26770 PF00106 short chain dehydrogenase INQ48_26775 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_26780 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_26780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_26780 PF12806 Acetyl-CoA dehydrogenase C-terminal like INQ48_26780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_26795 PF06983 3-demethylubiquinone-9 3-methyltransferase INQ48_26805 PF07690 Major Facilitator Superfamily INQ48_26810 PF07237 Protein of unknown function (DUF1428) INQ48_26825 PF04444 Catechol dioxygenase N terminus INQ48_26825 PF00775 Dioxygenase INQ48_26830 PF03466 LysR substrate binding domain INQ48_26830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_26855 PF00465 Iron-containing alcohol dehydrogenase INQ48_26865 PF07690 Major Facilitator Superfamily INQ48_26870 PF01494 FAD binding domain INQ48_26890 PF01137 RNA 3'-terminal phosphate cyclase INQ48_26890 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain INQ48_26895 PF10127 RNA repair pathway DNA polymerase beta family INQ48_26910 PF01139 tRNA-splicing ligase RtcB INQ48_26925 PF00158 Sigma-54 interaction domain INQ48_26925 PF06956 Regulator of RNA terminal phosphate cyclase INQ48_26940 PF12146 Serine aminopeptidase, S33 INQ48_27000 PF00535 Glycosyl transferase family 2 INQ48_27005 PF14883 Hypothetical glycosyl hydrolase family 13 INQ48_27005 PF01522 Polysaccharide deacetylase INQ48_27015 PF00108 Thiolase, N-terminal domain INQ48_27015 PF02803 Thiolase, C-terminal domain INQ48_27020 PF01144 Coenzyme A transferase INQ48_27025 PF01144 Coenzyme A transferase INQ48_27030 PF01614 Bacterial transcriptional regulator INQ48_27030 PF09339 IclR helix-turn-helix domain INQ48_27045 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_27060 PF00005 ABC transporter INQ48_27065 PF00005 ABC transporter INQ48_27075 PF00171 Aldehyde dehydrogenase family INQ48_27090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_27090 PF03466 LysR substrate binding domain INQ48_27095 PF00324 Amino acid permease INQ48_27125 PF13629 Pilus formation protein N terminal region INQ48_27125 PF04972 BON domain INQ48_27125 PF00263 Bacterial type II and III secretion system protein INQ48_27135 PF00437 Type II/IV secretion system protein INQ48_27175 PF00158 Sigma-54 interaction domain INQ48_27175 PF02954 Bacterial regulatory protein, Fis family INQ48_27175 PF01590 GAF domain INQ48_27185 PF00529 HlyD membrane-fusion protein of T1SS INQ48_27185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_27190 PF03412 Peptidase C39 family INQ48_27190 PF00005 ABC transporter INQ48_27190 PF00664 ABC transporter transmembrane region INQ48_27200 PF02875 Mur ligase family, glutamate ligase domain INQ48_27200 PF08245 Mur ligase middle domain INQ48_27200 PF01225 Mur ligase family, catalytic domain INQ48_27205 PF00691 OmpA family INQ48_27225 PF00775 Dioxygenase INQ48_27225 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal INQ48_27235 PF07690 Major Facilitator Superfamily INQ48_27240 PF00034 Cytochrome c INQ48_27245 PF01434 Peptidase family M41 INQ48_27245 PF17862 AAA+ lid domain INQ48_27245 PF00004 ATPase family associated with various cellular activities (AAA) INQ48_27270 PF04357 TamB, inner membrane protein subunit of TAM complex INQ48_27285 PF02634 FdhD/NarQ family INQ48_27290 PF01568 Molydopterin dinucleotide binding domain INQ48_27290 PF12838 4Fe-4S dicluster domain INQ48_27290 PF00384 Molybdopterin oxidoreductase INQ48_27290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_27290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region INQ48_27295 PF00037 4Fe-4S binding domain INQ48_27295 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region INQ48_27295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit INQ48_27310 PF07690 Major Facilitator Superfamily INQ48_27320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_27320 PF03466 LysR substrate binding domain INQ48_27325 PF02887 Pyruvate kinase, alpha/beta domain INQ48_27325 PF00224 Pyruvate kinase, barrel domain INQ48_27330 PF02558 Ketopantoate reductase PanE/ApbA INQ48_27330 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_27335 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_27340 PF00549 CoA-ligase INQ48_27340 PF02629 CoA binding domain INQ48_27345 PF08442 ATP-grasp domain INQ48_27345 PF00549 CoA-ligase INQ48_27350 PF13419 Haloacid dehalogenase-like hydrolase INQ48_27355 PF02515 CoA-transferase family III INQ48_27360 PF00512 His Kinase A (phospho-acceptor) domain INQ48_27360 PF00989 PAS fold INQ48_27360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_27365 PF02515 CoA-transferase family III INQ48_27370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_27370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_27370 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_27385 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_27410 PF00561 alpha/beta hydrolase fold INQ48_27420 PF01613 Flavin reductase like domain INQ48_27425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_27435 PF16295 Tetracyclin repressor-like, C-terminal domain INQ48_27435 PF00440 Bacterial regulatory proteins, tetR family INQ48_27440 PF03060 Nitronate monooxygenase INQ48_27445 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_27450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_27450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_27450 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_27455 PF09339 IclR helix-turn-helix domain INQ48_27455 PF01614 Bacterial transcriptional regulator INQ48_27460 PF02515 CoA-transferase family III INQ48_27465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_27465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_27465 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_27475 PF02515 CoA-transferase family III INQ48_27485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_27490 PF00892 EamA-like transporter family INQ48_27500 PF00005 ABC transporter INQ48_27505 PF00005 ABC transporter INQ48_27505 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_27515 PF13458 Periplasmic binding protein INQ48_27525 PF00890 FAD binding domain INQ48_27540 PF01553 Acyltransferase INQ48_27545 PF01979 Amidohydrolase family INQ48_27550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INQ48_27550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INQ48_27555 PF00156 Phosphoribosyl transferase domain INQ48_27560 PF03652 Holliday junction resolvase INQ48_27565 PF02622 Uncharacterized ACR, COG1678 INQ48_27570 PF03441 FAD binding domain of DNA photolyase INQ48_27570 PF00875 DNA photolyase INQ48_27575 PF01627 Hpt domain INQ48_27575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_27575 PF00072 Response regulator receiver domain INQ48_27575 PF01584 CheW-like domain INQ48_27580 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term INQ48_27580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain INQ48_27590 PF00072 Response regulator receiver domain INQ48_27595 PF00072 Response regulator receiver domain INQ48_27600 PF00301 Rubredoxin INQ48_27610 PF00202 Aminotransferase class-III INQ48_27615 PF01425 Amidase INQ48_27625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_27625 PF03466 LysR substrate binding domain INQ48_27635 PF01808 AICARFT/IMPCHase bienzyme INQ48_27635 PF02142 MGS-like domain INQ48_27640 PF02954 Bacterial regulatory protein, Fis family INQ48_27645 PF01207 Dihydrouridine synthase (Dus) INQ48_27650 PF09335 SNARE associated Golgi protein INQ48_27670 PF01926 50S ribosome-binding GTPase INQ48_27670 PF06071 Protein of unknown function (DUF933) INQ48_27675 PF13407 Periplasmic binding protein domain INQ48_27680 PF00005 ABC transporter INQ48_27685 PF02653 Branched-chain amino acid transport system / permease component INQ48_27690 PF00356 Bacterial regulatory proteins, lacI family INQ48_27695 PF00294 pfkB family carbohydrate kinase INQ48_27700 PF05025 RbsD / FucU transport protein family INQ48_27710 PF01494 FAD binding domain INQ48_27715 PF13098 Thioredoxin-like domain INQ48_27715 PF10411 Disulfide bond isomerase protein N-terminus INQ48_27730 PF00378 Enoyl-CoA hydratase/isomerase INQ48_27765 PF00106 short chain dehydrogenase INQ48_27770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_27780 PF04116 Fatty acid hydroxylase superfamily INQ48_27790 PF05491 RuvB C-terminal winged helix domain INQ48_27790 PF17864 RuvB AAA lid domain INQ48_27790 PF05496 Holliday junction DNA helicase RuvB P-loop domain INQ48_27795 PF01066 CDP-alcohol phosphatidyltransferase INQ48_27800 PF12147 Putative methyltransferase INQ48_27800 PF12146 Serine aminopeptidase, S33 INQ48_27840 PF00583 Acetyltransferase (GNAT) family INQ48_27840 PF13380 CoA binding domain INQ48_27840 PF13607 Succinyl-CoA ligase like flavodoxin domain INQ48_27845 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_27865 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_27870 PF12833 Helix-turn-helix domain INQ48_27870 PF14525 AraC-binding-like domain INQ48_27875 PF02727 Copper amine oxidase, N2 domain INQ48_27875 PF01179 Copper amine oxidase, enzyme domain INQ48_27875 PF02728 Copper amine oxidase, N3 domain INQ48_27875 PF07833 Copper amine oxidase N-terminal domain INQ48_27895 PF07499 RuvA, C-terminal domain INQ48_27895 PF01330 RuvA N terminal domain INQ48_27900 PF02562 PhoH-like protein INQ48_27905 PF02130 Uncharacterized protein family UPF0054 INQ48_27915 PF02580 D-Tyr-tRNA(Tyr) deacylase INQ48_27920 PF16916 Dimerisation domain of Zinc Transporter INQ48_27920 PF01545 Cation efflux family INQ48_27935 PF01479 S4 domain INQ48_27935 PF00579 tRNA synthetases class I (W and Y) INQ48_27940 PF01551 Peptidase family M23 INQ48_27940 PF04225 Opacity-associated protein A LysM-like domain INQ48_27945 PF03702 Anhydro-N-acetylmuramic acid kinase INQ48_27950 PF07690 Major Facilitator Superfamily INQ48_27955 PF01521 Iron-sulphur cluster biosynthesis INQ48_27960 PF00380 Ribosomal protein S9/S16 INQ48_27965 PF00572 Ribosomal protein L13 INQ48_27970 PF00595 PDZ domain INQ48_27980 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ INQ48_27985 PF03330 Lytic transglycolase INQ48_27990 PF02219 Methylenetetrahydrofolate reductase INQ48_27995 PF01479 S4 domain INQ48_27995 PF01728 FtsJ-like methyltransferase INQ48_28000 PF05221 S-adenosyl-L-homocysteine hydrolase INQ48_28000 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain INQ48_28020 PF00561 alpha/beta hydrolase fold INQ48_28030 PF03144 Elongation factor Tu domain 2 INQ48_28030 PF16658 Class II release factor RF3, C-terminal domain INQ48_28030 PF00009 Elongation factor Tu GTP binding domain INQ48_28045 PF00005 ABC transporter INQ48_28065 PF02661 Fic/DOC family INQ48_28065 PF13784 Fic/DOC family N-terminal INQ48_28070 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_28075 PF00850 Histone deacetylase domain INQ48_28080 PF02423 Ornithine cyclodeaminase/mu-crystallin family INQ48_28085 PF17760 UvrA interaction domain INQ48_28085 PF17755 UvrA DNA-binding domain INQ48_28085 PF00005 ABC transporter INQ48_28105 PF00083 Sugar (and other) transporter INQ48_28105 PF08946 Osmosensory transporter coiled coil INQ48_28125 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_28125 PF18267 Rubredoxin NAD+ reductase C-terminal domain INQ48_28125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain INQ48_28125 PF04324 BFD-like [2Fe-2S] binding domain INQ48_28125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain INQ48_28130 PF13806 Rieske-like [2Fe-2S] domain INQ48_28135 PF01226 Formate/nitrite transporter INQ48_28140 PF00069 Protein kinase domain INQ48_28140 PF03793 PASTA domain INQ48_28145 PF00682 HMGL-like INQ48_28150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_28150 PF03466 LysR substrate binding domain INQ48_28155 PF02515 CoA-transferase family III INQ48_28160 PF04444 Catechol dioxygenase N terminus INQ48_28160 PF00775 Dioxygenase INQ48_28170 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_28175 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_28180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_28200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_28200 PF00364 Biotin-requiring enzyme INQ48_28200 PF00289 Biotin carboxylase, N-terminal domain INQ48_28200 PF02785 Biotin carboxylase C-terminal domain INQ48_28210 PF00378 Enoyl-CoA hydratase/isomerase INQ48_28215 PF01039 Carboxyl transferase domain INQ48_28220 PF00501 AMP-binding enzyme INQ48_28220 PF13193 AMP-binding enzyme C-terminal domain INQ48_28225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_28225 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_28225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_28240 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_28245 PF00355 Rieske [2Fe-2S] domain INQ48_28260 PF13419 Haloacid dehalogenase-like hydrolase INQ48_28265 PF01964 Radical SAM ThiC family INQ48_28265 PF13667 ThiC-associated domain INQ48_28275 PF00196 Bacterial regulatory proteins, luxR family INQ48_28280 PF01425 Amidase INQ48_28285 PF00149 Calcineurin-like phosphoesterase INQ48_28290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_28290 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_28290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_28295 PF07687 Peptidase dimerisation domain INQ48_28295 PF01546 Peptidase family M20/M25/M40 INQ48_28300 PF00108 Thiolase, N-terminal domain INQ48_28300 PF02803 Thiolase, C-terminal domain INQ48_28305 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) INQ48_28310 PF00484 Carbonic anhydrase INQ48_28315 PF13411 MerR HTH family regulatory protein INQ48_28330 PF00849 RNA pseudouridylate synthase INQ48_28370 PF02092 Glycyl-tRNA synthetase beta subunit INQ48_28370 PF05746 DALR anticodon binding domain INQ48_28375 PF02091 Glycyl-tRNA synthetase alpha subunit INQ48_28380 PF00781 Diacylglycerol kinase catalytic domain INQ48_28385 PF00149 Calcineurin-like phosphoesterase INQ48_28390 PF01569 PAP2 superfamily INQ48_28395 PF00710 Asparaginase, N-terminal INQ48_28395 PF17763 Glutaminase/Asparaginase C-terminal domain INQ48_28410 PF01979 Amidohydrolase family INQ48_28415 PF02633 Creatinine amidohydrolase INQ48_28425 PF00005 ABC transporter INQ48_28430 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_28440 PF00795 Carbon-nitrogen hydrolase INQ48_28445 PF03471 Transporter associated domain INQ48_28445 PF00571 CBS domain INQ48_28455 PF01037 Lrp/AsnC ligand binding domain INQ48_28460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_28465 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_28470 PF00351 Biopterin-dependent aromatic amino acid hydroxylase INQ48_28475 PF13193 AMP-binding enzyme C-terminal domain INQ48_28475 PF00501 AMP-binding enzyme INQ48_28510 PF16326 ABC transporter C-terminal domain INQ48_28510 PF12848 ABC transporter INQ48_28510 PF00005 ABC transporter INQ48_28515 PF13091 PLD-like domain INQ48_28550 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_28560 PF01494 FAD binding domain INQ48_28605 PF03783 Curli production assembly/transport component CsgG INQ48_28615 PF00202 Aminotransferase class-III INQ48_28620 PF00551 Formyl transferase INQ48_28635 PF02785 Biotin carboxylase C-terminal domain INQ48_28635 PF00289 Biotin carboxylase, N-terminal domain INQ48_28635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_28640 PF00501 AMP-binding enzyme INQ48_28640 PF13193 AMP-binding enzyme C-terminal domain INQ48_28645 PF00440 Bacterial regulatory proteins, tetR family INQ48_28650 PF13458 Periplasmic binding protein INQ48_28655 PF00364 Biotin-requiring enzyme INQ48_28655 PF00289 Biotin carboxylase, N-terminal domain INQ48_28655 PF02785 Biotin carboxylase C-terminal domain INQ48_28655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INQ48_28660 PF02682 Carboxyltransferase domain, subdomain C and D INQ48_28665 PF03746 LamB/YcsF family INQ48_28670 PF07840 FadR C-terminal domain INQ48_28670 PF00392 Bacterial regulatory proteins, gntR family INQ48_28680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_28695 PF00067 Cytochrome P450 INQ48_28695 PF00667 FAD binding domain INQ48_28695 PF00258 Flavodoxin INQ48_28695 PF00175 Oxidoreductase NAD-binding domain INQ48_28700 PF00072 Response regulator receiver domain INQ48_28700 PF00486 Transcriptional regulatory protein, C terminal INQ48_28725 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain INQ48_28725 PF06974 Protein of unknown function (DUF1298) INQ48_28730 PF00326 Prolyl oligopeptidase family INQ48_28730 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain INQ48_28735 PF00491 Arginase family INQ48_28750 PF00485 Phosphoribulokinase / Uridine kinase family INQ48_28760 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase INQ48_28760 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain INQ48_28770 PF01619 Proline dehydrogenase INQ48_28770 PF14850 DNA-binding domain of Proline dehydrogenase INQ48_28770 PF18327 Proline utilization A proline dehydrogenase N-terminal domain INQ48_28770 PF00171 Aldehyde dehydrogenase family INQ48_28775 PF01037 Lrp/AsnC ligand binding domain INQ48_28780 PF01168 Alanine racemase, N-terminal domain INQ48_28785 PF00437 Type II/IV secretion system protein INQ48_28790 PF00437 Type II/IV secretion system protein INQ48_28800 PF09278 MerR, DNA binding INQ48_28800 PF00376 MerR family regulatory protein INQ48_28805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_28805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_28815 PF13580 SIS domain INQ48_28820 PF02021 Uncharacterised protein family UPF0102 INQ48_28825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases INQ48_28835 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_28840 PF01220 Dehydroquinase class II INQ48_28845 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_28850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_28860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_28860 PF13360 PQQ-like domain INQ48_28870 PF00436 Single-strand binding protein family INQ48_28875 PF00654 Voltage gated chloride channel INQ48_28880 PF17760 UvrA interaction domain INQ48_28880 PF17755 UvrA DNA-binding domain INQ48_28900 PF00137 ATP synthase subunit C INQ48_28910 PF02653 Branched-chain amino acid transport system / permease component INQ48_28915 PF11862 Domain of unknown function (DUF3382) INQ48_28915 PF02653 Branched-chain amino acid transport system / permease component INQ48_28920 PF00005 ABC transporter INQ48_28920 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_28925 PF00005 ABC transporter INQ48_28935 PF07690 Major Facilitator Superfamily INQ48_28940 PF12852 Cupin INQ48_28940 PF12833 Helix-turn-helix domain INQ48_28945 PF00916 Sulfate permease family INQ48_28945 PF01740 STAS domain INQ48_28960 PF00890 FAD binding domain INQ48_28975 PF00005 ABC transporter INQ48_28980 PF00005 ABC transporter INQ48_28980 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_28985 PF11862 Domain of unknown function (DUF3382) INQ48_28985 PF02653 Branched-chain amino acid transport system / permease component INQ48_28990 PF02653 Branched-chain amino acid transport system / permease component INQ48_29010 PF00440 Bacterial regulatory proteins, tetR family INQ48_29010 PF16295 Tetracyclin repressor-like, C-terminal domain INQ48_29015 PF01613 Flavin reductase like domain INQ48_29025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_29030 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29035 PF04199 Putative cyclase INQ48_29040 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_29045 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_29050 PF13609 Gram-negative porin INQ48_29060 PF01494 FAD binding domain INQ48_29065 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29070 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29075 PF01494 FAD binding domain INQ48_29080 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_29085 PF07883 Cupin domain INQ48_29090 PF03466 LysR substrate binding domain INQ48_29090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29120 PF04244 Deoxyribodipyrimidine photo-lyase-related protein INQ48_29125 PF12973 ChrR Cupin-like domain INQ48_29130 PF04542 Sigma-70 region 2 INQ48_29130 PF04545 Sigma-70, region 4 INQ48_29140 PF01791 DeoC/LacD family aldolase INQ48_29145 PF00248 Aldo/keto reductase family INQ48_29150 PF02653 Branched-chain amino acid transport system / permease component INQ48_29155 PF00005 ABC transporter INQ48_29165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_29165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_29170 PF01266 FAD dependent oxidoreductase INQ48_29170 PF16901 C-terminal domain of alpha-glycerophosphate oxidase INQ48_29175 PF00392 Bacterial regulatory proteins, gntR family INQ48_29175 PF07702 UTRA domain INQ48_29185 PF02515 CoA-transferase family III INQ48_29190 PF12833 Helix-turn-helix domain INQ48_29195 PF13407 Periplasmic binding protein domain INQ48_29200 PF00005 ABC transporter INQ48_29205 PF02653 Branched-chain amino acid transport system / permease component INQ48_29210 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_29210 PF00107 Zinc-binding dehydrogenase INQ48_29215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_29215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_29235 PF00384 Molybdopterin oxidoreductase INQ48_29235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_29235 PF01568 Molydopterin dinucleotide binding domain INQ48_29250 PF07687 Peptidase dimerisation domain INQ48_29250 PF01546 Peptidase family M20/M25/M40 INQ48_29260 PF01546 Peptidase family M20/M25/M40 INQ48_29260 PF07687 Peptidase dimerisation domain INQ48_29265 PF04286 Protein of unknown function (DUF445) INQ48_29280 PF03309 Type III pantothenate kinase INQ48_29285 PF01476 LysM domain INQ48_29285 PF04972 BON domain INQ48_29295 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_29305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_29305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_29310 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29315 PF00682 HMGL-like INQ48_29320 PF02515 CoA-transferase family III INQ48_29325 PF07690 Major Facilitator Superfamily INQ48_29330 PF03466 LysR substrate binding domain INQ48_29330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29335 PF00391 PEP-utilising enzyme, mobile domain INQ48_29335 PF02896 PEP-utilising enzyme, TIM barrel domain INQ48_29335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain INQ48_29340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INQ48_29340 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_29345 PF02558 Ketopantoate reductase PanE/ApbA INQ48_29345 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_29355 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_29360 PF00005 ABC transporter INQ48_29360 PF08402 TOBE domain INQ48_29380 PF01048 Phosphorylase superfamily INQ48_29380 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus INQ48_29385 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29395 PF00067 Cytochrome P450 INQ48_29405 PF02798 Glutathione S-transferase, N-terminal domain INQ48_29410 PF03466 LysR substrate binding domain INQ48_29410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29425 PF00005 ABC transporter INQ48_29430 PF01061 ABC-2 type transporter INQ48_29445 PF00990 Diguanylate cyclase, GGDEF domain INQ48_29445 PF00563 EAL domain INQ48_29445 PF03707 Bacterial signalling protein N terminal repeat INQ48_29450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_29450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_29450 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_29460 PF00270 DEAD/DEAH box helicase INQ48_29460 PF00271 Helicase conserved C-terminal domain INQ48_29465 PF01253 Translation initiation factor SUI1 INQ48_29470 PF12843 Putative quorum-sensing-regulated virulence factor INQ48_29475 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) INQ48_29480 PF07331 Tripartite tricarboxylate transporter TctB family INQ48_29485 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_29490 PF01925 Sulfite exporter TauE/SafE INQ48_29495 PF00909 Ammonium Transporter Family INQ48_29505 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_29505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_29505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_29510 PF00155 Aminotransferase class I and II INQ48_29520 PF00171 Aldehyde dehydrogenase family INQ48_29535 PF00005 ABC transporter INQ48_29535 PF08402 TOBE domain INQ48_29540 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_29545 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_29555 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_29555 PF04324 BFD-like [2Fe-2S] binding domain INQ48_29570 PF07690 Major Facilitator Superfamily INQ48_29575 PF00440 Bacterial regulatory proteins, tetR family INQ48_29575 PF02909 Tetracyclin repressor-like, C-terminal domain INQ48_29580 PF00732 GMC oxidoreductase INQ48_29580 PF05199 GMC oxidoreductase INQ48_29585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29585 PF03466 LysR substrate binding domain INQ48_29590 PF02405 Permease MlaE INQ48_29595 PF00005 ABC transporter INQ48_29595 PF09383 NIL domain INQ48_29635 PF01494 FAD binding domain INQ48_29645 PF04209 homogentisate 1,2-dioxygenase INQ48_29650 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29655 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_29660 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_29665 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29675 PF00392 Bacterial regulatory proteins, gntR family INQ48_29675 PF07729 FCD domain INQ48_29690 PF00676 Dehydrogenase E1 component INQ48_29695 PF02779 Transketolase, pyrimidine binding domain INQ48_29695 PF02780 Transketolase, C-terminal domain INQ48_29705 PF00578 AhpC/TSA family INQ48_29710 PF03466 LysR substrate binding domain INQ48_29710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29720 PF03466 LysR substrate binding domain INQ48_29725 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29740 PF01494 FAD binding domain INQ48_29750 PF00378 Enoyl-CoA hydratase/isomerase INQ48_29755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_29755 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_29755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_29760 PF13193 AMP-binding enzyme C-terminal domain INQ48_29760 PF00501 AMP-binding enzyme INQ48_29775 PF01196 Ribosomal protein L17 INQ48_29780 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain INQ48_29780 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain INQ48_29780 PF01000 RNA polymerase Rpb3/RpoA insert domain INQ48_29785 PF01479 S4 domain INQ48_29785 PF00163 Ribosomal protein S4/S9 N-terminal domain INQ48_29790 PF00411 Ribosomal protein S11 INQ48_29795 PF00416 Ribosomal protein S13/S18 INQ48_29800 PF00444 Ribosomal protein L36 INQ48_29805 PF00344 SecY translocase INQ48_29810 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A INQ48_29815 PF00327 Ribosomal protein L30p/L7e INQ48_29820 PF03719 Ribosomal protein S5, C-terminal domain INQ48_29820 PF00333 Ribosomal protein S5, N-terminal domain INQ48_29825 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast INQ48_29830 PF00347 Ribosomal protein L6 INQ48_29835 PF00410 Ribosomal protein S8 INQ48_29840 PF00253 Ribosomal protein S14p/S29e INQ48_29845 PF00281 Ribosomal protein L5 INQ48_29845 PF00673 ribosomal L5P family C-terminus INQ48_29850 PF00467 KOW motif INQ48_29850 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 INQ48_29855 PF00238 Ribosomal protein L14p/L23e INQ48_29865 PF03807 NADP oxidoreductase coenzyme F420-dependent INQ48_29865 PF14748 Pyrroline-5-carboxylate reductase dimerisation INQ48_29870 PF01575 MaoC like domain INQ48_29875 PF01040 UbiA prenyltransferase family INQ48_29880 PF00210 Ferritin-like domain INQ48_29885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29885 PF03466 LysR substrate binding domain INQ48_29895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_29895 PF03466 LysR substrate binding domain INQ48_29900 PF01212 Beta-eliminating lyase INQ48_29905 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_29910 PF17991 Thioredoxin like C-terminal domain INQ48_29910 PF00578 AhpC/TSA family INQ48_29910 PF02683 Cytochrome C biogenesis protein transmembrane region INQ48_29915 PF00072 Response regulator receiver domain INQ48_29915 PF00486 Transcriptional regulatory protein, C terminal INQ48_29920 PF02566 OsmC-like protein INQ48_29925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_29925 PF00512 His Kinase A (phospho-acceptor) domain INQ48_29925 PF00672 HAMP domain INQ48_29930 PF17991 Thioredoxin like C-terminal domain INQ48_29930 PF00578 AhpC/TSA family INQ48_29930 PF02683 Cytochrome C biogenesis protein transmembrane region INQ48_29935 PF01810 LysE type translocator INQ48_29940 PF00271 Helicase conserved C-terminal domain INQ48_29940 PF00270 DEAD/DEAH box helicase INQ48_29940 PF17191 RecG wedge domain INQ48_29955 PF02547 Queuosine biosynthesis protein INQ48_29960 PF13476 AAA domain INQ48_29970 PF01702 Queuine tRNA-ribosyltransferase INQ48_30020 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family INQ48_30035 PF00814 Glycoprotease family INQ48_30045 PF08220 DeoR-like helix-turn-helix domain INQ48_30045 PF00455 DeoR C terminal sensor domain INQ48_30050 PF00293 NUDIX domain INQ48_30055 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family INQ48_30065 PF03481 Putative GTP-binding controlling metal-binding INQ48_30065 PF01300 Telomere recombination INQ48_30070 PF02222 ATP-grasp domain INQ48_30070 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain INQ48_30075 PF00731 AIR carboxylase INQ48_30080 PF00085 Thioredoxin INQ48_30085 PF01381 Helix-turn-helix INQ48_30090 PF13657 HipA N-terminal domain INQ48_30090 PF07804 HipA-like C-terminal domain INQ48_30105 PF01259 SAICAR synthetase INQ48_30110 PF01116 Fructose-bisphosphate aldolase class-II INQ48_30120 PF00224 Pyruvate kinase, barrel domain INQ48_30120 PF02887 Pyruvate kinase, alpha/beta domain INQ48_30125 PF00162 Phosphoglycerate kinase INQ48_30130 PF03466 LysR substrate binding domain INQ48_30130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_30145 PF01494 FAD binding domain INQ48_30160 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_30165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_30165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_30180 PF00551 Formyl transferase INQ48_30180 PF02911 Formyl transferase, C-terminal domain INQ48_30190 PF01327 Polypeptide deformylase INQ48_30200 PF02481 DNA recombination-mediator protein A INQ48_30200 PF17782 DprA winged helix domain INQ48_30205 PF04361 Protein of unknown function (DUF494) INQ48_30215 PF02355 Protein export membrane protein INQ48_30215 PF07549 SecD/SecF GG Motif INQ48_30220 PF07549 SecD/SecF GG Motif INQ48_30220 PF13721 SecD export protein N-terminal TM region INQ48_30220 PF02355 Protein export membrane protein INQ48_30225 PF02699 Preprotein translocase subunit INQ48_30240 PF01037 Lrp/AsnC ligand binding domain INQ48_30245 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) INQ48_30245 PF13296 Putative type VI secretion system Rhs element Vgr INQ48_30245 PF04717 Type VI secretion system, phage-baseplate injector INQ48_30260 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_30265 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_30270 PF05977 Transmembrane secretion effector INQ48_30275 PF07690 Major Facilitator Superfamily INQ48_30280 PF02633 Creatinine amidohydrolase INQ48_30285 PF00005 ABC transporter INQ48_30290 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_30310 PF00175 Oxidoreductase NAD-binding domain INQ48_30310 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_30320 PF01042 Endoribonuclease L-PSP INQ48_30330 PF01261 Xylose isomerase-like TIM barrel INQ48_30335 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_30340 PF07005 Sugar-binding N-terminal domain INQ48_30340 PF17042 Nucleotide-binding C-terminal domain INQ48_30345 PF01370 NAD dependent epimerase/dehydratase family INQ48_30355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_30355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_30360 PF00392 Bacterial regulatory proteins, gntR family INQ48_30360 PF07729 FCD domain INQ48_30380 PF01965 DJ-1/PfpI family INQ48_30380 PF12833 Helix-turn-helix domain INQ48_30385 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_30385 PF17831 Pyruvate dehydrogenase E1 component middle domain INQ48_30390 PF01037 Lrp/AsnC ligand binding domain INQ48_30425 PF00072 Response regulator receiver domain INQ48_30425 PF00196 Bacterial regulatory proteins, luxR family INQ48_30430 PF00989 PAS fold INQ48_30430 PF00512 His Kinase A (phospho-acceptor) domain INQ48_30430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_30435 PF00795 Carbon-nitrogen hydrolase INQ48_30445 PF03710 Glutamate-ammonia ligase adenylyltransferase INQ48_30445 PF08335 GlnD PII-uridylyltransferase INQ48_30455 PF02627 Carboxymuconolactone decarboxylase family INQ48_30460 PF08281 Sigma-70, region 4 INQ48_30460 PF04542 Sigma-70 region 2 INQ48_30460 PF12680 SnoaL-like domain INQ48_30470 PF00255 Glutathione peroxidase INQ48_30475 PF01593 Flavin containing amine oxidoreductase INQ48_30490 PF00043 Glutathione S-transferase, C-terminal domain INQ48_30490 PF13417 Glutathione S-transferase, N-terminal domain INQ48_30495 PF08328 Adenylosuccinate lyase C-terminal INQ48_30495 PF00206 Lyase INQ48_30505 PF07660 Secretin and TonB N terminus short domain INQ48_30505 PF07715 TonB-dependent Receptor Plug Domain INQ48_30505 PF00593 TonB dependent receptor INQ48_30510 PF07152 YaeQ protein INQ48_30525 PF03741 Integral membrane protein TerC family INQ48_30535 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV INQ48_30540 PF01435 Peptidase family M48 INQ48_30540 PF13181 Tetratricopeptide repeat INQ48_30545 PF01967 MoaC family INQ48_30555 PF00114 Pilin (bacterial filament) INQ48_30555 PF07963 Prokaryotic N-terminal methylation motif INQ48_30580 PF05567 Neisseria PilC beta-propeller domain INQ48_30600 PF07963 Prokaryotic N-terminal methylation motif INQ48_30600 PF00114 Pilin (bacterial filament) INQ48_30610 PF00211 Adenylate and Guanylate cyclase catalytic domain INQ48_30615 PF00498 FHA domain INQ48_30625 PF03741 Integral membrane protein TerC family INQ48_30630 PF00549 CoA-ligase INQ48_30630 PF02629 CoA binding domain INQ48_30635 PF08442 ATP-grasp domain INQ48_30635 PF00549 CoA-ligase INQ48_30640 PF01118 Semialdehyde dehydrogenase, NAD binding domain INQ48_30655 PF02631 RecX family INQ48_30660 PF00154 recA bacterial DNA recombination protein INQ48_30670 PF00072 Response regulator receiver domain INQ48_30670 PF00486 Transcriptional regulatory protein, C terminal INQ48_30675 PF00512 His Kinase A (phospho-acceptor) domain INQ48_30675 PF08521 Two-component sensor kinase N-terminal INQ48_30675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_30685 PF02237 Biotin protein ligase C terminal domain INQ48_30685 PF03099 Biotin/lipoate A/B protein ligase family INQ48_30685 PF08279 HTH domain INQ48_30695 PF01751 Toprim domain INQ48_30695 PF01131 DNA topoisomerase INQ48_30700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_30705 PF00106 short chain dehydrogenase INQ48_30715 PF07722 Peptidase C26 INQ48_30735 PF07690 Major Facilitator Superfamily INQ48_30740 PF01176 Translation initiation factor 1A / IF-1 INQ48_30745 PF00271 Helicase conserved C-terminal domain INQ48_30745 PF00270 DEAD/DEAH box helicase INQ48_30745 PF03880 DbpA RNA binding domain INQ48_30750 PF01554 MatE INQ48_30765 PF07739 TipAS antibiotic-recognition domain INQ48_30765 PF13411 MerR HTH family regulatory protein INQ48_30775 PF03466 LysR substrate binding domain INQ48_30775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_30780 PF00892 EamA-like transporter family INQ48_30790 PF01361 Tautomerase enzyme INQ48_30795 PF00392 Bacterial regulatory proteins, gntR family INQ48_30795 PF07729 FCD domain INQ48_30800 PF17806 Sarcosine oxidase A3 domain INQ48_30800 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_30810 PF01266 FAD dependent oxidoreductase INQ48_30815 PF05544 Proline racemase INQ48_30820 PF13458 Periplasmic binding protein INQ48_30825 PF00701 Dihydrodipicolinate synthetase family INQ48_30835 PF13657 HipA N-terminal domain INQ48_30835 PF07804 HipA-like C-terminal domain INQ48_30850 PF01546 Peptidase family M20/M25/M40 INQ48_30850 PF07687 Peptidase dimerisation domain INQ48_30855 PF02678 Pirin INQ48_30855 PF05726 Pirin C-terminal cupin domain INQ48_30865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_30865 PF03466 LysR substrate binding domain INQ48_30870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INQ48_30890 PF05726 Pirin C-terminal cupin domain INQ48_30890 PF02678 Pirin INQ48_30900 PF01566 Natural resistance-associated macrophage protein INQ48_30920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain INQ48_30920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain INQ48_30925 PF02779 Transketolase, pyrimidine binding domain INQ48_30925 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_30925 PF02780 Transketolase, C-terminal domain INQ48_30930 PF02675 S-adenosylmethionine decarboxylase INQ48_30935 PF00483 Nucleotidyl transferase INQ48_30940 PF00557 Metallopeptidase family M24 INQ48_30940 PF05195 Aminopeptidase P, N-terminal domain INQ48_30965 PF00905 Penicillin binding protein transpeptidase domain INQ48_30965 PF00912 Transglycosylase INQ48_30965 PF06832 Penicillin-Binding Protein C-terminus Family INQ48_30970 PF00207 Alpha-2-macroglobulin family INQ48_30970 PF11974 Bacterial alpha-2-macroglobulin MG3 domain INQ48_30970 PF07703 Alpha-2-macroglobulin bait region domain INQ48_30970 PF17962 Bacterial macroglobulin domain 6 INQ48_30970 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain INQ48_30970 PF01835 MG2 domain INQ48_30970 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain INQ48_31020 PF01515 Phosphate acetyl/butaryl transferase INQ48_31020 PF00390 Malic enzyme, N-terminal domain INQ48_31020 PF03949 Malic enzyme, NAD binding domain INQ48_31025 PF00545 ribonuclease INQ48_31040 PF00398 Ribosomal RNA adenine dimethylase INQ48_31045 PF00639 PPIC-type PPIASE domain INQ48_31045 PF09312 SurA N-terminal domain INQ48_31050 PF04453 LPS transport system D INQ48_31055 PF01636 Phosphotransferase enzyme family INQ48_31060 PF04452 RNA methyltransferase INQ48_31075 PF07690 Major Facilitator Superfamily INQ48_31085 PF12146 Serine aminopeptidase, S33 INQ48_31105 PF00520 Ion transport protein INQ48_31105 PF00027 Cyclic nucleotide-binding domain INQ48_31110 PF01205 Uncharacterized protein family UPF0029 INQ48_31110 PF09186 Domain of unknown function (DUF1949) INQ48_31115 PF07021 Methionine biosynthesis protein MetW INQ48_31115 PF00561 alpha/beta hydrolase fold INQ48_31120 PF00561 alpha/beta hydrolase fold INQ48_31125 PF01169 Uncharacterized protein family UPF0016 INQ48_31130 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) INQ48_31135 PF00106 short chain dehydrogenase INQ48_31150 PF01380 SIS domain INQ48_31150 PF00571 CBS domain INQ48_31155 PF02080 TrkA-C domain INQ48_31155 PF00999 Sodium/hydrogen exchanger family INQ48_31155 PF02254 TrkA-N domain INQ48_31165 PF04960 Glutaminase INQ48_31165 PF01740 STAS domain INQ48_31165 PF00027 Cyclic nucleotide-binding domain INQ48_31170 PF12631 MnmE helical domain INQ48_31170 PF10396 GTP-binding protein TrmE N-terminus INQ48_31170 PF01926 50S ribosome-binding GTPase INQ48_31175 PF14849 YidC periplasmic domain INQ48_31175 PF02096 60Kd inner membrane protein INQ48_31180 PF01809 Putative membrane protein insertion efficiency factor INQ48_31185 PF00825 Ribonuclease P INQ48_31190 PF00468 Ribosomal protein L34 INQ48_31210 PF12849 PBP superfamily domain INQ48_31215 PF00482 Type II secretion system (T2SS), protein F INQ48_31220 PF00437 Type II/IV secretion system protein INQ48_31225 PF00263 Bacterial type II and III secretion system protein INQ48_31225 PF03958 Bacterial type II/III secretion system short domain INQ48_31245 PF07963 Prokaryotic N-terminal methylation motif INQ48_31245 PF08334 Type II secretion system (T2SS), protein G INQ48_31275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_31275 PF03466 LysR substrate binding domain INQ48_31280 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31285 PF00857 Isochorismatase family INQ48_31295 PF02426 Muconolactone delta-isomerase INQ48_31320 PF01546 Peptidase family M20/M25/M40 INQ48_31320 PF07687 Peptidase dimerisation domain INQ48_31325 PF00155 Aminotransferase class I and II INQ48_31330 PF01546 Peptidase family M20/M25/M40 INQ48_31330 PF07687 Peptidase dimerisation domain INQ48_31345 PF07519 Tannase and feruloyl esterase INQ48_31350 PF00392 Bacterial regulatory proteins, gntR family INQ48_31350 PF07702 UTRA domain INQ48_31360 PF00330 Aconitase family (aconitate hydratase) INQ48_31365 PF00694 Aconitase C-terminal domain INQ48_31375 PF04303 PrpF protein INQ48_31380 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31385 PF04303 PrpF protein INQ48_31395 PF00106 short chain dehydrogenase INQ48_31405 PF00246 Zinc carboxypeptidase INQ48_31410 PF01425 Amidase INQ48_31420 PF00246 Zinc carboxypeptidase INQ48_31425 PF03466 LysR substrate binding domain INQ48_31425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_31450 PF00501 AMP-binding enzyme INQ48_31450 PF13193 AMP-binding enzyme C-terminal domain INQ48_31455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_31455 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_31460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_31470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_31470 PF03466 LysR substrate binding domain INQ48_31475 PF14552 Tautomerase enzyme INQ48_31480 PF00376 MerR family regulatory protein INQ48_31480 PF09278 MerR, DNA binding INQ48_31485 PF07859 alpha/beta hydrolase fold INQ48_31505 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31515 PF00672 HAMP domain INQ48_31515 PF00512 His Kinase A (phospho-acceptor) domain INQ48_31515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_31520 PF00196 Bacterial regulatory proteins, luxR family INQ48_31520 PF00072 Response regulator receiver domain INQ48_31545 PF00005 ABC transporter INQ48_31550 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_31550 PF00005 ABC transporter INQ48_31560 PF02653 Branched-chain amino acid transport system / permease component INQ48_31565 PF13458 Periplasmic binding protein INQ48_31570 PF09084 NMT1/THI5 like INQ48_31585 PF08681 Protein of unknown function (DUF1778) INQ48_31595 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_31600 PF00296 Luciferase-like monooxygenase INQ48_31605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_31605 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_31610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31615 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31620 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_31625 PF00005 ABC transporter INQ48_31630 PF00881 Nitroreductase family INQ48_31635 PF00005 ABC transporter INQ48_31635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_31640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31645 PF03180 NLPA lipoprotein INQ48_31650 PF09084 NMT1/THI5 like INQ48_31655 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_31655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_31660 PF00248 Aldo/keto reductase family INQ48_31665 PF00296 Luciferase-like monooxygenase INQ48_31680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31685 PF01425 Amidase INQ48_31690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31705 PF05368 NmrA-like family INQ48_31715 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_31720 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31725 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31730 PF00005 ABC transporter INQ48_31740 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_31745 PF01968 Hydantoinase/oxoprolinase INQ48_31745 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_31760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_31775 PF00005 ABC transporter INQ48_31775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_31780 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31780 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_31785 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31795 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31800 PF13454 FAD-NAD(P)-binding INQ48_31805 PF03466 LysR substrate binding domain INQ48_31805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_31820 PF00296 Luciferase-like monooxygenase INQ48_31825 PF00296 Luciferase-like monooxygenase INQ48_31835 PF00155 Aminotransferase class I and II INQ48_31835 PF00392 Bacterial regulatory proteins, gntR family INQ48_31845 PF04303 PrpF protein INQ48_31850 PF00330 Aconitase family (aconitate hydratase) INQ48_31850 PF00694 Aconitase C-terminal domain INQ48_31855 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31860 PF00285 Citrate synthase, C-terminal domain INQ48_31870 PF09856 Predicted transcriptional regulator (DUF2083) INQ48_31870 PF06114 IrrE N-terminal-like domain INQ48_31870 PF01381 Helix-turn-helix INQ48_31880 PF17932 Tetracyclin repressor-like, C-terminal domain INQ48_31880 PF00440 Bacterial regulatory proteins, tetR family INQ48_31885 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_31890 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_31900 PF00356 Bacterial regulatory proteins, lacI family INQ48_31900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family INQ48_31910 PF00378 Enoyl-CoA hydratase/isomerase INQ48_31920 PF02515 CoA-transferase family III INQ48_31925 PF17912 MalK OB fold domain INQ48_31925 PF00005 ABC transporter INQ48_31930 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31935 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_31965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INQ48_31965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INQ48_31970 PF02798 Glutathione S-transferase, N-terminal domain INQ48_31975 PF00175 Oxidoreductase NAD-binding domain INQ48_31975 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_31980 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_31980 PF00355 Rieske [2Fe-2S] domain INQ48_31985 PF02608 ABC transporter substrate-binding protein PnrA-like INQ48_31990 PF00392 Bacterial regulatory proteins, gntR family INQ48_31990 PF07729 FCD domain INQ48_32000 PF00202 Aminotransferase class-III INQ48_32005 PF08402 TOBE domain INQ48_32005 PF00005 ABC transporter INQ48_32010 PF00392 Bacterial regulatory proteins, gntR family INQ48_32010 PF07729 FCD domain INQ48_32015 PF00850 Histone deacetylase domain INQ48_32025 PF00850 Histone deacetylase domain INQ48_32035 PF01063 Amino-transferase class IV INQ48_32040 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32045 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32055 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_32055 PF02779 Transketolase, pyrimidine binding domain INQ48_32055 PF02780 Transketolase, C-terminal domain INQ48_32060 PF02780 Transketolase, C-terminal domain INQ48_32060 PF02779 Transketolase, pyrimidine binding domain INQ48_32100 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32105 PF03358 NADPH-dependent FMN reductase INQ48_32110 PF00199 Catalase INQ48_32110 PF06628 Catalase-related immune-responsive INQ48_32145 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_32150 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_32155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32155 PF03466 LysR substrate binding domain INQ48_32165 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32170 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_32175 PF01042 Endoribonuclease L-PSP INQ48_32180 PF02630 SCO1/SenC INQ48_32190 PF07715 TonB-dependent Receptor Plug Domain INQ48_32190 PF00593 TonB dependent receptor INQ48_32205 PF00384 Molybdopterin oxidoreductase INQ48_32205 PF01568 Molydopterin dinucleotide binding domain INQ48_32210 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_32210 PF00175 Oxidoreductase NAD-binding domain INQ48_32220 PF00156 Phosphoribosyl transferase domain INQ48_32230 PF01979 Amidohydrolase family INQ48_32235 PF07687 Peptidase dimerisation domain INQ48_32235 PF01546 Peptidase family M20/M25/M40 INQ48_32240 PF01180 Dihydroorotate dehydrogenase INQ48_32245 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B INQ48_32245 PF00970 Oxidoreductase FAD-binding domain INQ48_32250 PF07690 Major Facilitator Superfamily INQ48_32265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32265 PF03466 LysR substrate binding domain INQ48_32275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32275 PF03466 LysR substrate binding domain INQ48_32280 PF08659 KR domain INQ48_32280 PF00550 Phosphopantetheine attachment site INQ48_32280 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_32280 PF14765 Polyketide synthase dehydratase INQ48_32280 PF00698 Acyl transferase domain INQ48_32300 PF13533 Biotin-lipoyl like INQ48_32305 PF07690 Major Facilitator Superfamily INQ48_32310 PF01638 HxlR-like helix-turn-helix INQ48_32315 PF03466 LysR substrate binding domain INQ48_32315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32320 PF00850 Histone deacetylase domain INQ48_32325 PF02653 Branched-chain amino acid transport system / permease component INQ48_32330 PF02653 Branched-chain amino acid transport system / permease component INQ48_32335 PF00005 ABC transporter INQ48_32340 PF00005 ABC transporter INQ48_32340 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_32350 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32355 PF01425 Amidase INQ48_32360 PF14525 AraC-binding-like domain INQ48_32360 PF12833 Helix-turn-helix domain INQ48_32370 PF00171 Aldehyde dehydrogenase family INQ48_32375 PF00202 Aminotransferase class-III INQ48_32390 PF00202 Aminotransferase class-III INQ48_32415 PF01425 Amidase INQ48_32420 PF00005 ABC transporter INQ48_32425 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32430 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32435 PF09084 NMT1/THI5 like INQ48_32440 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_32445 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_32450 PF01494 FAD binding domain INQ48_32465 PF03466 LysR substrate binding domain INQ48_32465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32470 PF02661 Fic/DOC family INQ48_32475 PF00990 Diguanylate cyclase, GGDEF domain INQ48_32475 PF03707 Bacterial signalling protein N terminal repeat INQ48_32475 PF00563 EAL domain INQ48_32485 PF00563 EAL domain INQ48_32485 PF00990 Diguanylate cyclase, GGDEF domain INQ48_32485 PF03707 Bacterial signalling protein N terminal repeat INQ48_32495 PF02913 FAD linked oxidases, C-terminal domain INQ48_32495 PF01565 FAD binding domain INQ48_32500 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32505 PF00484 Carbonic anhydrase INQ48_32520 PF00171 Aldehyde dehydrogenase family INQ48_32525 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_32530 PF01012 Electron transfer flavoprotein domain INQ48_32535 PF01012 Electron transfer flavoprotein domain INQ48_32535 PF00766 Electron transfer flavoprotein FAD-binding domain INQ48_32540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32540 PF03466 LysR substrate binding domain INQ48_32550 PF02515 CoA-transferase family III INQ48_32555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_32555 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_32555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_32565 PF00158 Sigma-54 interaction domain INQ48_32565 PF13426 PAS domain INQ48_32565 PF02954 Bacterial regulatory protein, Fis family INQ48_32570 PF13458 Periplasmic binding protein INQ48_32580 PF00378 Enoyl-CoA hydratase/isomerase INQ48_32585 PF00501 AMP-binding enzyme INQ48_32585 PF14535 AMP-binding enzyme C-terminal domain INQ48_32605 PF03466 LysR substrate binding domain INQ48_32605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_32610 PF00092 von Willebrand factor type A domain INQ48_32610 PF07584 Aerotolerance regulator N-terminal INQ48_32620 PF13416 Bacterial extracellular solute-binding protein INQ48_32625 PF08402 TOBE domain INQ48_32625 PF00005 ABC transporter INQ48_32630 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32645 PF01325 Iron dependent repressor, N-terminal DNA binding domain INQ48_32645 PF02742 Iron dependent repressor, metal binding and dimerisation domain INQ48_32650 PF01177 Asp/Glu/Hydantoin racemase INQ48_32665 PF00691 OmpA family INQ48_32665 PF13677 Membrane MotB of proton-channel complex MotA/MotB INQ48_32680 PF01022 Bacterial regulatory protein, arsR family INQ48_32685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_32690 PF17932 Tetracyclin repressor-like, C-terminal domain INQ48_32690 PF00440 Bacterial regulatory proteins, tetR family INQ48_32695 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32700 PF13193 AMP-binding enzyme C-terminal domain INQ48_32700 PF00501 AMP-binding enzyme INQ48_32705 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_32705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_32705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_32710 PF00108 Thiolase, N-terminal domain INQ48_32710 PF02803 Thiolase, C-terminal domain INQ48_32715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_32715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_32715 PF00378 Enoyl-CoA hydratase/isomerase INQ48_32725 PF01494 FAD binding domain INQ48_32730 PF02515 CoA-transferase family III INQ48_32740 PF00881 Nitroreductase family INQ48_32745 PF02515 CoA-transferase family III INQ48_32750 PF01494 FAD binding domain INQ48_32755 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32760 PF13193 AMP-binding enzyme C-terminal domain INQ48_32760 PF00501 AMP-binding enzyme INQ48_32765 PF00440 Bacterial regulatory proteins, tetR family INQ48_32770 PF07690 Major Facilitator Superfamily INQ48_32780 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_32790 PF00005 ABC transporter INQ48_32810 PF08448 PAS fold INQ48_32810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_32810 PF00512 His Kinase A (phospho-acceptor) domain INQ48_32810 PF13188 PAS domain INQ48_32810 PF00072 Response regulator receiver domain INQ48_32815 PF06745 KaiC INQ48_32820 PF01925 Sulfite exporter TauE/SafE INQ48_32830 PF00535 Glycosyl transferase family 2 INQ48_32850 PF00561 alpha/beta hydrolase fold INQ48_32855 PF00005 ABC transporter INQ48_32860 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_32860 PF00005 ABC transporter INQ48_32865 PF02653 Branched-chain amino acid transport system / permease component INQ48_32870 PF02653 Branched-chain amino acid transport system / permease component INQ48_32875 PF13458 Periplasmic binding protein INQ48_32880 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_32880 PF00107 Zinc-binding dehydrogenase INQ48_32890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_32890 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_32890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_32910 PF13193 AMP-binding enzyme C-terminal domain INQ48_32910 PF00501 AMP-binding enzyme INQ48_32915 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_32920 PF12833 Helix-turn-helix domain INQ48_32920 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term INQ48_32925 PF02515 CoA-transferase family III INQ48_32935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_32935 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_32935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_32945 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_32945 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_32950 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_32950 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_32955 PF01799 [2Fe-2S] binding domain INQ48_32955 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_32980 PF01037 Lrp/AsnC ligand binding domain INQ48_32985 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_33000 PF02653 Branched-chain amino acid transport system / permease component INQ48_33005 PF02653 Branched-chain amino acid transport system / permease component INQ48_33005 PF11862 Domain of unknown function (DUF3382) INQ48_33010 PF00005 ABC transporter INQ48_33010 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_33015 PF00005 ABC transporter INQ48_33020 PF00067 Cytochrome P450 INQ48_33030 PF00732 GMC oxidoreductase INQ48_33030 PF05199 GMC oxidoreductase INQ48_33040 PF00486 Transcriptional regulatory protein, C terminal INQ48_33040 PF00072 Response regulator receiver domain INQ48_33045 PF12833 Helix-turn-helix domain INQ48_33050 PF00561 alpha/beta hydrolase fold INQ48_33050 PF00364 Biotin-requiring enzyme INQ48_33060 PF01047 MarR family INQ48_33065 PF00196 Bacterial regulatory proteins, luxR family INQ48_33070 PF00196 Bacterial regulatory proteins, luxR family INQ48_33070 PF00072 Response regulator receiver domain INQ48_33075 PF00196 Bacterial regulatory proteins, luxR family INQ48_33090 PF03466 LysR substrate binding domain INQ48_33090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33115 PF01047 MarR family INQ48_33130 PF07690 Major Facilitator Superfamily INQ48_33135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33135 PF03466 LysR substrate binding domain INQ48_33140 PF12833 Helix-turn-helix domain INQ48_33140 PF12852 Cupin INQ48_33145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33145 PF03466 LysR substrate binding domain INQ48_33160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33160 PF03466 LysR substrate binding domain INQ48_33165 PF02321 Outer membrane efflux protein INQ48_33170 PF13533 Biotin-lipoyl like INQ48_33175 PF07869 Protein of unknown function (DUF1656) INQ48_33180 PF04632 Fusaric acid resistance protein family INQ48_33185 PF02311 AraC-like ligand binding domain INQ48_33185 PF12833 Helix-turn-helix domain INQ48_33190 PF03466 LysR substrate binding domain INQ48_33190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33195 PF00561 alpha/beta hydrolase fold INQ48_33200 PF00106 short chain dehydrogenase INQ48_33210 PF07690 Major Facilitator Superfamily INQ48_33215 PF00248 Aldo/keto reductase family INQ48_33250 PF17645 Arylmalonate decarboxylase INQ48_33260 PF01494 FAD binding domain INQ48_33270 PF00501 AMP-binding enzyme INQ48_33270 PF13193 AMP-binding enzyme C-terminal domain INQ48_33285 PF00440 Bacterial regulatory proteins, tetR family INQ48_33285 PF08361 MAATS-type transcriptional repressor, C-terminal region INQ48_33290 PF01638 HxlR-like helix-turn-helix INQ48_33295 PF13458 Periplasmic binding protein INQ48_33300 PF02653 Branched-chain amino acid transport system / permease component INQ48_33305 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_33305 PF00005 ABC transporter INQ48_33310 PF00005 ABC transporter INQ48_33315 PF00795 Carbon-nitrogen hydrolase INQ48_33320 PF01425 Amidase INQ48_33330 PF02525 Flavodoxin-like fold INQ48_33335 PF00378 Enoyl-CoA hydratase/isomerase INQ48_33345 PF00440 Bacterial regulatory proteins, tetR family INQ48_33355 PF00196 Bacterial regulatory proteins, luxR family INQ48_33355 PF00072 Response regulator receiver domain INQ48_33360 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33365 PF00501 AMP-binding enzyme INQ48_33365 PF13193 AMP-binding enzyme C-terminal domain INQ48_33370 PF00378 Enoyl-CoA hydratase/isomerase INQ48_33375 PF07519 Tannase and feruloyl esterase INQ48_33385 PF01804 Penicillin amidase INQ48_33390 PF12833 Helix-turn-helix domain INQ48_33390 PF02311 AraC-like ligand binding domain INQ48_33400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33400 PF03466 LysR substrate binding domain INQ48_33410 PF03466 LysR substrate binding domain INQ48_33410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33420 PF00106 short chain dehydrogenase INQ48_33425 PF00149 Calcineurin-like phosphoesterase INQ48_33430 PF01425 Amidase INQ48_33435 PF00005 ABC transporter INQ48_33435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_33440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_33440 PF00005 ABC transporter INQ48_33445 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_33450 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_33460 PF01804 Penicillin amidase INQ48_33465 PF01425 Amidase INQ48_33470 PF02780 Transketolase, C-terminal domain INQ48_33470 PF02779 Transketolase, pyrimidine binding domain INQ48_33475 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_33480 PF00392 Bacterial regulatory proteins, gntR family INQ48_33480 PF07729 FCD domain INQ48_33485 PF00202 Aminotransferase class-III INQ48_33490 PF13609 Gram-negative porin INQ48_33495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33495 PF03466 LysR substrate binding domain INQ48_33515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_33515 PF01842 ACT domain INQ48_33515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_33520 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_33520 PF01968 Hydantoinase/oxoprolinase INQ48_33530 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_33530 PF00072 Response regulator receiver domain INQ48_33530 PF01627 Hpt domain INQ48_33530 PF00512 His Kinase A (phospho-acceptor) domain INQ48_33530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_33530 PF00989 PAS fold INQ48_33540 PF09339 IclR helix-turn-helix domain INQ48_33540 PF01614 Bacterial transcriptional regulator INQ48_33545 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33550 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_33550 PF00355 Rieske [2Fe-2S] domain INQ48_33555 PF13577 SnoaL-like domain INQ48_33560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA INQ48_33565 PF00970 Oxidoreductase FAD-binding domain INQ48_33565 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_33565 PF00175 Oxidoreductase NAD-binding domain INQ48_33570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_33570 PF00512 His Kinase A (phospho-acceptor) domain INQ48_33570 PF01627 Hpt domain INQ48_33570 PF00989 PAS fold INQ48_33570 PF00072 Response regulator receiver domain INQ48_33570 PF18415 Histidine kinase receptor ArcB trans-membrane domain INQ48_33575 PF00512 His Kinase A (phospho-acceptor) domain INQ48_33575 PF00072 Response regulator receiver domain INQ48_33575 PF09308 LuxQ, periplasmic INQ48_33575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_33585 PF13581 Histidine kinase-like ATPase domain INQ48_33590 PF01740 STAS domain INQ48_33595 PF01740 STAS domain INQ48_33595 PF08678 Rsbr N terminal INQ48_33605 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_33610 PF00694 Aconitase C-terminal domain INQ48_33615 PF00330 Aconitase family (aconitate hydratase) INQ48_33620 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33625 PF03466 LysR substrate binding domain INQ48_33625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33630 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_33635 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33640 PF00356 Bacterial regulatory proteins, lacI family INQ48_33645 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_33650 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_33655 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33660 PF00355 Rieske [2Fe-2S] domain INQ48_33665 PF01261 Xylose isomerase-like TIM barrel INQ48_33670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33670 PF03466 LysR substrate binding domain INQ48_33680 PF13378 Enolase C-terminal domain-like INQ48_33685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33685 PF03466 LysR substrate binding domain INQ48_33700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33705 PF01872 RibD C-terminal domain INQ48_33715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase INQ48_33715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain INQ48_33730 PF03466 LysR substrate binding domain INQ48_33730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33735 PF07690 Major Facilitator Superfamily INQ48_33750 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33770 PF01062 Bestrophin, RFP-TM, chloride channel INQ48_33775 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_33790 PF01522 Polysaccharide deacetylase INQ48_33795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33795 PF03466 LysR substrate binding domain INQ48_33805 PF07690 Major Facilitator Superfamily INQ48_33810 PF01042 Endoribonuclease L-PSP INQ48_33815 PF01070 FMN-dependent dehydrogenase INQ48_33820 PF00005 ABC transporter INQ48_33835 PF02913 FAD linked oxidases, C-terminal domain INQ48_33835 PF01565 FAD binding domain INQ48_33845 PF04209 homogentisate 1,2-dioxygenase INQ48_33855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INQ48_33880 PF01037 Lrp/AsnC ligand binding domain INQ48_33885 PF02913 FAD linked oxidases, C-terminal domain INQ48_33885 PF01565 FAD binding domain INQ48_33890 PF00005 ABC transporter INQ48_33895 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_33895 PF00005 ABC transporter INQ48_33910 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_33910 PF00175 Oxidoreductase NAD-binding domain INQ48_33910 PF00970 Oxidoreductase FAD-binding domain INQ48_33920 PF02515 CoA-transferase family III INQ48_33925 PF14535 AMP-binding enzyme C-terminal domain INQ48_33925 PF00501 AMP-binding enzyme INQ48_33945 PF00378 Enoyl-CoA hydratase/isomerase INQ48_33960 PF03797 Autotransporter beta-domain INQ48_33970 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family INQ48_33980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_33980 PF03466 LysR substrate binding domain INQ48_33990 PF13458 Periplasmic binding protein INQ48_34020 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_34025 PF07331 Tripartite tricarboxylate transporter TctB family INQ48_34030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34035 PF00072 Response regulator receiver domain INQ48_34035 PF00486 Transcriptional regulatory protein, C terminal INQ48_34040 PF07995 Glucose / Sorbosone dehydrogenase INQ48_34045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_34045 PF03466 LysR substrate binding domain INQ48_34050 PF00296 Luciferase-like monooxygenase INQ48_34055 PF01613 Flavin reductase like domain INQ48_34060 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34065 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_34070 PF02515 CoA-transferase family III INQ48_34095 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_34100 PF03737 Aldolase/RraA INQ48_34125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_34125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_34125 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_34130 PF07690 Major Facilitator Superfamily INQ48_34135 PF06445 GyrI-like small molecule binding domain INQ48_34135 PF12833 Helix-turn-helix domain INQ48_34145 PF08446 PAS fold INQ48_34145 PF00360 Phytochrome region INQ48_34145 PF00512 His Kinase A (phospho-acceptor) domain INQ48_34145 PF01590 GAF domain INQ48_34145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34150 PF07715 TonB-dependent Receptor Plug Domain INQ48_34150 PF00593 TonB dependent receptor INQ48_34160 PF01032 FecCD transport family INQ48_34165 PF00005 ABC transporter INQ48_34175 PF00459 Inositol monophosphatase family INQ48_34195 PF00080 Copper/zinc superoxide dismutase (SODC) INQ48_34205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34205 PF00512 His Kinase A (phospho-acceptor) domain INQ48_34205 PF07689 KaiB domain INQ48_34210 PF12697 Alpha/beta hydrolase family INQ48_34235 PF13545 Crp-like helix-turn-helix domain INQ48_34235 PF00027 Cyclic nucleotide-binding domain INQ48_34240 PF00199 Catalase INQ48_34240 PF18011 C-terminal domain found in long catalases INQ48_34240 PF06628 Catalase-related immune-responsive INQ48_34255 PF00005 ABC transporter INQ48_34265 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34270 PF04909 Amidohydrolase INQ48_34275 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34280 PF03737 Aldolase/RraA INQ48_34285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_34285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_34290 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34295 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34300 PF04909 Amidohydrolase INQ48_34310 PF07702 UTRA domain INQ48_34310 PF00392 Bacterial regulatory proteins, gntR family INQ48_34315 PF01575 MaoC like domain INQ48_34320 PF02515 CoA-transferase family III INQ48_34325 PF02515 CoA-transferase family III INQ48_34330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_34330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_34330 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_34340 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34345 PF04909 Amidohydrolase INQ48_34350 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_34355 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34360 PF00171 Aldehyde dehydrogenase family INQ48_34365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_34365 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_34365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_34370 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34380 PF01070 FMN-dependent dehydrogenase INQ48_34390 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain INQ48_34390 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain INQ48_34395 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_34400 PF03737 Aldolase/RraA INQ48_34400 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_34405 PF00392 Bacterial regulatory proteins, gntR family INQ48_34405 PF07729 FCD domain INQ48_34410 PF00106 short chain dehydrogenase INQ48_34415 PF06719 AraC-type transcriptional regulator N-terminus INQ48_34415 PF12833 Helix-turn-helix domain INQ48_34420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_34420 PF03466 LysR substrate binding domain INQ48_34425 PF02515 CoA-transferase family III INQ48_34430 PF00378 Enoyl-CoA hydratase/isomerase INQ48_34435 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34450 PF00270 DEAD/DEAH box helicase INQ48_34450 PF16124 RecQ zinc-binding INQ48_34450 PF00271 Helicase conserved C-terminal domain INQ48_34450 PF09382 RQC domain INQ48_34450 PF00570 HRDC domain INQ48_34460 PF00557 Metallopeptidase family M24 INQ48_34470 PF00196 Bacterial regulatory proteins, luxR family INQ48_34475 PF06441 Epoxide hydrolase N terminus INQ48_34480 PF01037 Lrp/AsnC ligand binding domain INQ48_34485 PF00282 Pyridoxal-dependent decarboxylase conserved domain INQ48_34490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34490 PF00512 His Kinase A (phospho-acceptor) domain INQ48_34490 PF00672 HAMP domain INQ48_34495 PF00196 Bacterial regulatory proteins, luxR family INQ48_34495 PF00072 Response regulator receiver domain INQ48_34500 PF00196 Bacterial regulatory proteins, luxR family INQ48_34500 PF00072 Response regulator receiver domain INQ48_34505 PF08447 PAS fold INQ48_34505 PF00989 PAS fold INQ48_34505 PF13426 PAS domain INQ48_34505 PF00512 His Kinase A (phospho-acceptor) domain INQ48_34505 PF13493 Domain of unknown function (DUF4118) INQ48_34505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34525 PF04909 Amidohydrolase INQ48_34535 PF08546 Ketopantoate reductase PanE/ApbA C terminal INQ48_34535 PF02558 Ketopantoate reductase PanE/ApbA INQ48_34600 PF00765 Autoinducer synthase INQ48_34605 PF00196 Bacterial regulatory proteins, luxR family INQ48_34605 PF03472 Autoinducer binding domain INQ48_34610 PF07495 Y_Y_Y domain INQ48_34610 PF00072 Response regulator receiver domain INQ48_34610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_34610 PF00512 His Kinase A (phospho-acceptor) domain INQ48_34610 PF07494 Two component regulator propeller INQ48_34610 PF12833 Helix-turn-helix domain INQ48_34615 PF02472 Biopolymer transport protein ExbD/TolR INQ48_34620 PF02472 Biopolymer transport protein ExbD/TolR INQ48_34625 PF01618 MotA/TolQ/ExbB proton channel family INQ48_34640 PF01042 Endoribonuclease L-PSP INQ48_34645 PF00155 Aminotransferase class I and II INQ48_34660 PF00144 Beta-lactamase INQ48_34670 PF13378 Enolase C-terminal domain-like INQ48_34670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain INQ48_34675 PF07715 TonB-dependent Receptor Plug Domain INQ48_34675 PF00593 TonB dependent receptor INQ48_34695 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) INQ48_34725 PF12796 Ankyrin repeats (3 copies) INQ48_34725 PF00023 Ankyrin repeat INQ48_34750 PF00011 Hsp20/alpha crystallin family INQ48_34770 PF13817 IS66 C-terminal element INQ48_34770 PF03050 Transposase IS66 family INQ48_34770 PF13005 zinc-finger binding domain of transposase IS66 INQ48_34770 PF13007 Transposase C of IS166 homeodomain INQ48_34775 PF02627 Carboxymuconolactone decarboxylase family INQ48_34780 PF12680 SnoaL-like domain INQ48_34780 PF08281 Sigma-70, region 4 INQ48_34780 PF04542 Sigma-70 region 2 INQ48_34785 PF00999 Sodium/hydrogen exchanger family INQ48_34805 PF04303 PrpF protein INQ48_34815 PF02803 Thiolase, C-terminal domain INQ48_34815 PF00108 Thiolase, N-terminal domain INQ48_34820 PF00106 short chain dehydrogenase INQ48_34825 PF02515 CoA-transferase family III INQ48_34830 PF00378 Enoyl-CoA hydratase/isomerase INQ48_34835 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34840 PF03466 LysR substrate binding domain INQ48_34840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_34845 PF00005 ABC transporter INQ48_34850 PF00005 ABC transporter INQ48_34850 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_34860 PF02653 Branched-chain amino acid transport system / permease component INQ48_34865 PF13458 Periplasmic binding protein INQ48_34870 PF00857 Isochorismatase family INQ48_34890 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_34890 PF00355 Rieske [2Fe-2S] domain INQ48_34895 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_34895 PF14759 Reductase C-terminal INQ48_34900 PF00355 Rieske [2Fe-2S] domain INQ48_34905 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_34905 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_34910 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_34910 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_34915 PF01799 [2Fe-2S] binding domain INQ48_34915 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_34920 PF00561 alpha/beta hydrolase fold INQ48_34930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_34930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_34930 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_34930 PF12806 Acetyl-CoA dehydrogenase C-terminal like INQ48_34940 PF01266 FAD dependent oxidoreductase INQ48_34945 PF07969 Amidohydrolase family INQ48_34950 PF01965 DJ-1/PfpI family INQ48_34955 PF02653 Branched-chain amino acid transport system / permease component INQ48_34960 PF00005 ABC transporter INQ48_34965 PF00005 ABC transporter INQ48_34965 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_34975 PF01965 DJ-1/PfpI family INQ48_34985 PF00330 Aconitase family (aconitate hydratase) INQ48_34990 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_34995 PF03466 LysR substrate binding domain INQ48_34995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_35015 PF03466 LysR substrate binding domain INQ48_35015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_35050 PF09587 Bacterial capsule synthesis protein PGA_cap INQ48_35055 PF00694 Aconitase C-terminal domain INQ48_35060 PF00330 Aconitase family (aconitate hydratase) INQ48_35065 PF00501 AMP-binding enzyme INQ48_35065 PF13193 AMP-binding enzyme C-terminal domain INQ48_35080 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_35090 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_35100 PF00392 Bacterial regulatory proteins, gntR family INQ48_35100 PF07702 UTRA domain INQ48_35110 PF00743 Flavin-binding monooxygenase-like INQ48_35115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_35115 PF00005 ABC transporter INQ48_35120 PF00005 ABC transporter INQ48_35120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_35125 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_35130 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_35155 PF00202 Aminotransferase class-III INQ48_35180 PF02653 Branched-chain amino acid transport system / permease component INQ48_35190 PF00005 ABC transporter INQ48_35200 PF00857 Isochorismatase family INQ48_35205 PF01425 Amidase INQ48_35210 PF00440 Bacterial regulatory proteins, tetR family INQ48_35210 PF17938 Tetracyclin repressor-like, C-terminal domain INQ48_35220 PF01355 High potential iron-sulfur protein INQ48_35235 PF06314 Acetoacetate decarboxylase (ADC) INQ48_35260 PF00005 ABC transporter INQ48_35265 PF00196 Bacterial regulatory proteins, luxR family INQ48_35270 PF00196 Bacterial regulatory proteins, luxR family INQ48_35280 PF00561 alpha/beta hydrolase fold INQ48_35290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_35290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_35290 PF00034 Cytochrome c INQ48_35300 PF00561 alpha/beta hydrolase fold INQ48_35315 PF02627 Carboxymuconolactone decarboxylase family INQ48_35330 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_35335 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_35340 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_35365 PF02627 Carboxymuconolactone decarboxylase family INQ48_35385 PF00196 Bacterial regulatory proteins, luxR family INQ48_35390 PF00196 Bacterial regulatory proteins, luxR family INQ48_35395 PF00106 short chain dehydrogenase INQ48_35405 PF08281 Sigma-70, region 4 INQ48_35405 PF04542 Sigma-70 region 2 INQ48_35405 PF12680 SnoaL-like domain INQ48_35410 PF02627 Carboxymuconolactone decarboxylase family INQ48_35420 PF09335 SNARE associated Golgi protein INQ48_35425 PF00196 Bacterial regulatory proteins, luxR family INQ48_35430 PF17874 MalT-like TPR region INQ48_35430 PF00196 Bacterial regulatory proteins, luxR family INQ48_35445 PF13091 PLD-like domain INQ48_35450 PF09411 Lipid A 3-O-deacylase (PagL) INQ48_35470 PF03050 Transposase IS66 family INQ48_35470 PF13005 zinc-finger binding domain of transposase IS66 INQ48_35470 PF13007 Transposase C of IS166 homeodomain INQ48_35470 PF13817 IS66 C-terminal element INQ48_35480 PF00775 Dioxygenase INQ48_35480 PF04444 Catechol dioxygenase N terminus INQ48_35485 PF00465 Iron-containing alcohol dehydrogenase INQ48_35490 PF01687 Riboflavin kinase INQ48_35490 PF06574 FAD synthetase INQ48_35495 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal INQ48_35495 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal INQ48_35500 PF01613 Flavin reductase like domain INQ48_35505 PF07690 Major Facilitator Superfamily INQ48_35515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_35515 PF03466 LysR substrate binding domain INQ48_35520 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_35535 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_35535 PF14759 Reductase C-terminal INQ48_35540 PF00355 Rieske [2Fe-2S] domain INQ48_35545 PF00355 Rieske [2Fe-2S] domain INQ48_35560 PF00005 ABC transporter INQ48_35560 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_35565 PF00005 ABC transporter INQ48_35570 PF02653 Branched-chain amino acid transport system / permease component INQ48_35700 PF08463 EcoEI R protein C-terminal INQ48_35700 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) INQ48_35700 PF04851 Type III restriction enzyme, res subunit INQ48_35700 PF00271 Helicase conserved C-terminal domain INQ48_35715 PF00196 Bacterial regulatory proteins, luxR family INQ48_35715 PF03472 Autoinducer binding domain INQ48_35770 PF14602 Hexapeptide repeat of succinyl-transferase INQ48_35770 PF12464 Maltose acetyltransferase INQ48_35775 PF05662 Coiled stalk of trimeric autotransporter adhesin INQ48_35775 PF05658 Head domain of trimeric autotransporter adhesin INQ48_35775 PF03895 YadA-like membrane anchor domain INQ48_35780 PF07506 RepB plasmid partitioning protein INQ48_35780 PF02195 ParB-like nuclease domain INQ48_35785 PF13614 AAA domain INQ48_35805 PF02082 Transcriptional regulator INQ48_35830 PF02245 Methylpurine-DNA glycosylase (MPG) INQ48_35845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_35845 PF00512 His Kinase A (phospho-acceptor) domain INQ48_35845 PF08448 PAS fold INQ48_35845 PF13188 PAS domain INQ48_35845 PF00072 Response regulator receiver domain INQ48_35860 PF00474 Sodium:solute symporter family INQ48_35865 PF00795 Carbon-nitrogen hydrolase INQ48_35880 PF02534 Type IV secretory system Conjugative DNA transfer INQ48_35885 PF00437 Type II/IV secretion system protein INQ48_35890 PF03743 Bacterial conjugation TrbI-like protein INQ48_35905 PF04610 TrbL/VirB6 plasmid conjugal transfer protein INQ48_35910 PF07996 Type IV secretion system proteins INQ48_35915 PF03135 CagE, TrbE, VirB family, component of type IV transporter system INQ48_35935 PF13614 AAA domain INQ48_35940 PF17762 HTH domain found in ParB protein INQ48_35940 PF02195 ParB-like nuclease domain INQ48_35965 PF00561 alpha/beta hydrolase fold INQ48_35990 PF00990 Diguanylate cyclase, GGDEF domain INQ48_36015 PF00072 Response regulator receiver domain INQ48_36015 PF00196 Bacterial regulatory proteins, luxR family INQ48_36020 PF00582 Universal stress protein family INQ48_36025 PF00403 Heavy-metal-associated domain INQ48_36035 PF00115 Cytochrome C and Quinol oxidase polypeptide I INQ48_36050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_36050 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP INQ48_36055 PF13746 4Fe-4S dicluster domain INQ48_36055 PF12801 4Fe-4S binding domain INQ48_36055 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase INQ48_36070 PF06969 HemN C-terminal domain INQ48_36070 PF04055 Radical SAM superfamily INQ48_36090 PF06100 MCRA family INQ48_36100 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain INQ48_36100 PF10996 Beta-Casp domain INQ48_36100 PF00753 Metallo-beta-lactamase superfamily INQ48_36105 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_36120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INQ48_36120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INQ48_36125 PF13545 Crp-like helix-turn-helix domain INQ48_36125 PF00027 Cyclic nucleotide-binding domain INQ48_36130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_36130 PF13426 PAS domain INQ48_36130 PF00072 Response regulator receiver domain INQ48_36135 PF00486 Transcriptional regulatory protein, C terminal INQ48_36135 PF00072 Response regulator receiver domain INQ48_36140 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase INQ48_36140 PF09363 XFP C-terminal domain INQ48_36140 PF09364 XFP N-terminal domain INQ48_36155 PF00196 Bacterial regulatory proteins, luxR family INQ48_36155 PF00072 Response regulator receiver domain INQ48_36175 PF00582 Universal stress protein family INQ48_36185 PF00582 Universal stress protein family INQ48_36220 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_36220 PF00107 Zinc-binding dehydrogenase INQ48_36255 PF06055 Exopolysaccharide synthesis, ExoD INQ48_36260 PF00690 Cation transporter/ATPase, N-terminus INQ48_36260 PF00689 Cation transporting ATPase, C-terminus INQ48_36270 PF00582 Universal stress protein family INQ48_36280 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus INQ48_36295 PF13180 PDZ domain INQ48_36305 PF00582 Universal stress protein family INQ48_36310 PF13180 PDZ domain INQ48_36310 PF17820 PDZ domain INQ48_36335 PF00501 AMP-binding enzyme INQ48_36355 PF00512 His Kinase A (phospho-acceptor) domain INQ48_36355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_36355 PF08521 Two-component sensor kinase N-terminal INQ48_36360 PF00486 Transcriptional regulatory protein, C terminal INQ48_36360 PF00072 Response regulator receiver domain INQ48_36385 PF09957 Bacterial antitoxin of type II TA system, VapB INQ48_36390 PF01850 PIN domain INQ48_36400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_36400 PF03466 LysR substrate binding domain INQ48_36405 PF00248 Aldo/keto reductase family INQ48_36410 PF00171 Aldehyde dehydrogenase family INQ48_36415 PF00005 ABC transporter INQ48_36420 PF00005 ABC transporter INQ48_36420 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_36425 PF02653 Branched-chain amino acid transport system / permease component INQ48_36430 PF02653 Branched-chain amino acid transport system / permease component INQ48_36430 PF11862 Domain of unknown function (DUF3382) INQ48_36450 PF00108 Thiolase, N-terminal domain INQ48_36450 PF02803 Thiolase, C-terminal domain INQ48_36455 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_36455 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_36460 PF01799 [2Fe-2S] binding domain INQ48_36460 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_36465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_36465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_36475 PF02515 CoA-transferase family III INQ48_36480 PF00732 GMC oxidoreductase INQ48_36480 PF05199 GMC oxidoreductase INQ48_36485 PF00378 Enoyl-CoA hydratase/isomerase INQ48_36490 PF00561 alpha/beta hydrolase fold INQ48_36490 PF00364 Biotin-requiring enzyme INQ48_36495 PF00107 Zinc-binding dehydrogenase INQ48_36495 PF16884 N-terminal domain of oxidoreductase INQ48_36500 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_36500 PF00107 Zinc-binding dehydrogenase INQ48_36510 PF00005 ABC transporter INQ48_36530 PF05853 beta-keto acid cleavage enzyme INQ48_36540 PF00440 Bacterial regulatory proteins, tetR family INQ48_36540 PF16859 Tetracyclin repressor-like, C-terminal domain INQ48_36565 PF02803 Thiolase, C-terminal domain INQ48_36565 PF00108 Thiolase, N-terminal domain INQ48_36570 PF05222 Alanine dehydrogenase/PNT, N-terminal domain INQ48_36570 PF01262 Alanine dehydrogenase/PNT, C-terminal domain INQ48_36575 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch INQ48_36580 PF02233 NAD(P) transhydrogenase beta subunit INQ48_36585 PF00199 Catalase INQ48_36590 PF01292 Prokaryotic cytochrome b561 INQ48_36600 PF07690 Major Facilitator Superfamily INQ48_36610 PF00440 Bacterial regulatory proteins, tetR family INQ48_36615 PF00135 Carboxylesterase family INQ48_36620 PF00135 Carboxylesterase family INQ48_36650 PF13426 PAS domain INQ48_36650 PF00072 Response regulator receiver domain INQ48_36650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_36660 PF00857 Isochorismatase family INQ48_36670 PF18073 Rubredoxin metal binding domain INQ48_36675 PF08769 Sporulation initiation factor Spo0A C terminal INQ48_36675 PF00072 Response regulator receiver domain INQ48_36685 PF12973 ChrR Cupin-like domain INQ48_36690 PF04545 Sigma-70, region 4 INQ48_36690 PF04542 Sigma-70 region 2 INQ48_36695 PF00072 Response regulator receiver domain INQ48_36695 PF00990 Diguanylate cyclase, GGDEF domain INQ48_36700 PF08212 Lipocalin-like domain INQ48_36725 PF01515 Phosphate acetyl/butaryl transferase INQ48_36730 PF02690 Na+/Pi-cotransporter INQ48_36735 PF03466 LysR substrate binding domain INQ48_36735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_36740 PF01966 HD domain INQ48_36745 PF02652 L-lactate permease INQ48_36750 PF01979 Amidohydrolase family INQ48_36750 PF13382 Adenine deaminase C-terminal domain INQ48_36790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_36790 PF00989 PAS fold INQ48_36790 PF00512 His Kinase A (phospho-acceptor) domain INQ48_36820 PF00155 Aminotransferase class I and II INQ48_36825 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_36830 PF00005 ABC transporter INQ48_36835 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_36840 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_36845 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_36880 PF02954 Bacterial regulatory protein, Fis family INQ48_36880 PF00158 Sigma-54 interaction domain INQ48_36880 PF00072 Response regulator receiver domain INQ48_36885 PF00512 His Kinase A (phospho-acceptor) domain INQ48_36885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_36890 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_36905 PF00171 Aldehyde dehydrogenase family INQ48_36915 PF08666 SAF domain INQ48_36915 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus INQ48_36925 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_36930 PF00005 ABC transporter INQ48_36935 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_36940 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_36975 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_36975 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_36980 PF03466 LysR substrate binding domain INQ48_36980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_36985 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_36995 PF05853 beta-keto acid cleavage enzyme INQ48_37020 PF13193 AMP-binding enzyme C-terminal domain INQ48_37020 PF00501 AMP-binding enzyme INQ48_37025 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_37030 PF01118 Semialdehyde dehydrogenase, NAD binding domain INQ48_37030 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation INQ48_37035 PF00682 HMGL-like INQ48_37035 PF07836 DmpG-like communication domain INQ48_37040 PF00593 TonB dependent receptor INQ48_37040 PF07715 TonB-dependent Receptor Plug Domain INQ48_37050 PF04542 Sigma-70 region 2 INQ48_37050 PF08281 Sigma-70, region 4 INQ48_37065 PF01425 Amidase INQ48_37070 PF03466 LysR substrate binding domain INQ48_37070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37090 PF00106 short chain dehydrogenase INQ48_37100 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37105 PF00108 Thiolase, N-terminal domain INQ48_37105 PF02803 Thiolase, C-terminal domain INQ48_37110 PF13193 AMP-binding enzyme C-terminal domain INQ48_37110 PF00501 AMP-binding enzyme INQ48_37115 PF00106 short chain dehydrogenase INQ48_37125 PF03737 Aldolase/RraA INQ48_37130 PF00440 Bacterial regulatory proteins, tetR family INQ48_37140 PF00484 Carbonic anhydrase INQ48_37150 PF01042 Endoribonuclease L-PSP INQ48_37155 PF03841 L-seryl-tRNA selenium transferase INQ48_37155 PF12390 Selenocysteine synthase N terminal INQ48_37160 PF00005 ABC transporter INQ48_37165 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37170 PF04069 Substrate binding domain of ABC-type glycine betaine transport system INQ48_37175 PF07702 UTRA domain INQ48_37175 PF00392 Bacterial regulatory proteins, gntR family INQ48_37195 PF04002 RadC-like JAB domain INQ48_37205 PF01850 PIN domain INQ48_37275 PF03466 LysR substrate binding domain INQ48_37275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37280 PF04909 Amidohydrolase INQ48_37285 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37290 PF02515 CoA-transferase family III INQ48_37295 PF00378 Enoyl-CoA hydratase/isomerase INQ48_37300 PF00465 Iron-containing alcohol dehydrogenase INQ48_37305 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37310 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_37320 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_37325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_37330 PF03466 LysR substrate binding domain INQ48_37330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37335 PF00202 Aminotransferase class-III INQ48_37340 PF00378 Enoyl-CoA hydratase/isomerase INQ48_37345 PF13193 AMP-binding enzyme C-terminal domain INQ48_37345 PF00501 AMP-binding enzyme INQ48_37345 PF16177 Acetyl-coenzyme A synthetase N-terminus INQ48_37350 PF00005 ABC transporter INQ48_37350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_37355 PF00005 ABC transporter INQ48_37355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_37360 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_37360 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37365 PF01546 Peptidase family M20/M25/M40 INQ48_37365 PF07687 Peptidase dimerisation domain INQ48_37370 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_37380 PF16859 Tetracyclin repressor-like, C-terminal domain INQ48_37380 PF00440 Bacterial regulatory proteins, tetR family INQ48_37385 PF07519 Tannase and feruloyl esterase INQ48_37390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37390 PF03466 LysR substrate binding domain INQ48_37395 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37400 PF01979 Amidohydrolase family INQ48_37405 PF05025 RbsD / FucU transport protein family INQ48_37415 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37420 PF00732 GMC oxidoreductase INQ48_37420 PF05199 GMC oxidoreductase INQ48_37425 PF01979 Amidohydrolase family INQ48_37430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INQ48_37430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INQ48_37435 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37440 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37445 PF01547 Bacterial extracellular solute-binding protein INQ48_37450 PF03459 TOBE domain INQ48_37450 PF00005 ABC transporter INQ48_37450 PF17912 MalK OB fold domain INQ48_37455 PF01380 SIS domain INQ48_37460 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INQ48_37460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_37465 PF01418 Helix-turn-helix domain, rpiR family INQ48_37465 PF01380 SIS domain INQ48_37475 PF03475 3-alpha domain INQ48_37475 PF03473 MOSC domain INQ48_37480 PF00117 Glutamine amidotransferase class-I INQ48_37480 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain INQ48_37485 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_37495 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37500 PF01381 Helix-turn-helix INQ48_37500 PF08671 Anti-repressor SinI INQ48_37505 PF13439 Glycosyltransferase Family 4 INQ48_37505 PF00534 Glycosyl transferases group 1 INQ48_37510 PF12852 Cupin INQ48_37510 PF12833 Helix-turn-helix domain INQ48_37575 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_37590 PF00512 His Kinase A (phospho-acceptor) domain INQ48_37590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_37590 PF07689 KaiB domain INQ48_37595 PF12697 Alpha/beta hydrolase family INQ48_37600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37600 PF03466 LysR substrate binding domain INQ48_37605 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37615 PF00180 Isocitrate/isopropylmalate dehydrogenase INQ48_37620 PF00107 Zinc-binding dehydrogenase INQ48_37620 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_37630 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system INQ48_37635 PF00512 His Kinase A (phospho-acceptor) domain INQ48_37635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_37635 PF00672 HAMP domain INQ48_37640 PF00486 Transcriptional regulatory protein, C terminal INQ48_37640 PF00072 Response regulator receiver domain INQ48_37655 PF03621 MbtH-like protein INQ48_37660 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase INQ48_37665 PF00668 Condensation domain INQ48_37665 PF00550 Phosphopantetheine attachment site INQ48_37665 PF00975 Thioesterase domain INQ48_37665 PF00501 AMP-binding enzyme INQ48_37665 PF13193 AMP-binding enzyme C-terminal domain INQ48_37695 PF13609 Gram-negative porin INQ48_37700 PF04199 Putative cyclase INQ48_37705 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_37710 PF07690 Major Facilitator Superfamily INQ48_37715 PF13458 Periplasmic binding protein INQ48_37720 PF02653 Branched-chain amino acid transport system / permease component INQ48_37725 PF00005 ABC transporter INQ48_37730 PF00005 ABC transporter INQ48_37735 PF00561 alpha/beta hydrolase fold INQ48_37745 PF01425 Amidase INQ48_37760 PF01425 Amidase INQ48_37780 PF00561 alpha/beta hydrolase fold INQ48_37785 PF00561 alpha/beta hydrolase fold INQ48_37790 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain INQ48_37790 PF12833 Helix-turn-helix domain INQ48_37790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain INQ48_37790 PF02805 Metal binding domain of Ada INQ48_37795 PF00072 Response regulator receiver domain INQ48_37795 PF00486 Transcriptional regulatory protein, C terminal INQ48_37805 PF00072 Response regulator receiver domain INQ48_37805 PF13188 PAS domain INQ48_37805 PF08448 PAS fold INQ48_37805 PF00512 His Kinase A (phospho-acceptor) domain INQ48_37805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_37810 PF00196 Bacterial regulatory proteins, luxR family INQ48_37810 PF00072 Response regulator receiver domain INQ48_37815 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37825 PF00190 Cupin INQ48_37830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37830 PF03466 LysR substrate binding domain INQ48_37835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37835 PF03466 LysR substrate binding domain INQ48_37845 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37855 PF01425 Amidase INQ48_37860 PF01522 Polysaccharide deacetylase INQ48_37875 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37880 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_37885 PF08402 TOBE domain INQ48_37885 PF00005 ABC transporter INQ48_37890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37890 PF03466 LysR substrate binding domain INQ48_37900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37900 PF03466 LysR substrate binding domain INQ48_37905 PF03358 NADPH-dependent FMN reductase INQ48_37910 PF13409 Glutathione S-transferase, N-terminal domain INQ48_37935 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37940 PF01177 Asp/Glu/Hydantoin racemase INQ48_37950 PF01804 Penicillin amidase INQ48_37960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_37960 PF03466 LysR substrate binding domain INQ48_37965 PF07171 MlrC C-terminus INQ48_37965 PF07364 Metallopeptidase family M81 INQ48_37975 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_37990 PF17761 DUF1016 N-terminal domain INQ48_37990 PF06250 YhcG PDDEXK nuclease domain INQ48_37995 PF02515 CoA-transferase family III INQ48_38000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38000 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38010 PF00378 Enoyl-CoA hydratase/isomerase INQ48_38015 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38020 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38025 PF03466 LysR substrate binding domain INQ48_38025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38030 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38035 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38040 PF02515 CoA-transferase family III INQ48_38045 PF00378 Enoyl-CoA hydratase/isomerase INQ48_38050 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38065 PF00106 short chain dehydrogenase INQ48_38070 PF01575 MaoC like domain INQ48_38085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38085 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38090 PF02515 CoA-transferase family III INQ48_38095 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38100 PF00593 TonB dependent receptor INQ48_38100 PF07715 TonB-dependent Receptor Plug Domain INQ48_38115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38115 PF03466 LysR substrate binding domain INQ48_38125 PF01494 FAD binding domain INQ48_38140 PF00005 ABC transporter INQ48_38145 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38165 PF13193 AMP-binding enzyme C-terminal domain INQ48_38165 PF00501 AMP-binding enzyme INQ48_38175 PF04199 Putative cyclase INQ48_38185 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain INQ48_38185 PF02129 X-Pro dipeptidyl-peptidase (S15 family) INQ48_38205 PF08448 PAS fold INQ48_38205 PF00072 Response regulator receiver domain INQ48_38205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_38205 PF00512 His Kinase A (phospho-acceptor) domain INQ48_38205 PF13188 PAS domain INQ48_38210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38210 PF03466 LysR substrate binding domain INQ48_38215 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38225 PF17806 Sarcosine oxidase A3 domain INQ48_38225 PF08669 Glycine cleavage T-protein C-terminal barrel domain INQ48_38225 PF01571 Aminomethyltransferase folate-binding domain INQ48_38225 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_38235 PF08501 Shikimate dehydrogenase substrate binding domain INQ48_38235 PF01488 Shikimate / quinate 5-dehydrogenase INQ48_38235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INQ48_38240 PF00561 alpha/beta hydrolase fold INQ48_38275 PF04717 Type VI secretion system, phage-baseplate injector INQ48_38275 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_38285 PF01965 DJ-1/PfpI family INQ48_38290 PF00106 short chain dehydrogenase INQ48_38295 PF13649 Methyltransferase domain INQ48_38300 PF00701 Dihydrodipicolinate synthetase family INQ48_38310 PF08946 Osmosensory transporter coiled coil INQ48_38310 PF00083 Sugar (and other) transporter INQ48_38325 PF01425 Amidase INQ48_38335 PF13396 Phospholipase_D-nuclease N-terminal INQ48_38335 PF13091 PLD-like domain INQ48_38340 PF17755 UvrA DNA-binding domain INQ48_38345 PF04055 Radical SAM superfamily INQ48_38350 PF03466 LysR substrate binding domain INQ48_38350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38360 PF08402 TOBE domain INQ48_38360 PF00005 ABC transporter INQ48_38365 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38370 PF00155 Aminotransferase class I and II INQ48_38400 PF00392 Bacterial regulatory proteins, gntR family INQ48_38400 PF00155 Aminotransferase class I and II INQ48_38405 PF00202 Aminotransferase class-III INQ48_38410 PF00171 Aldehyde dehydrogenase family INQ48_38425 PF00557 Metallopeptidase family M24 INQ48_38430 PF01212 Beta-eliminating lyase INQ48_38435 PF01037 Lrp/AsnC ligand binding domain INQ48_38440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38440 PF03466 LysR substrate binding domain INQ48_38445 PF00248 Aldo/keto reductase family INQ48_38450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38450 PF03466 LysR substrate binding domain INQ48_38455 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38460 PF13378 Enolase C-terminal domain-like INQ48_38465 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_38475 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38490 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38495 PF07690 Major Facilitator Superfamily INQ48_38500 PF00920 Dehydratase family INQ48_38525 PF00196 Bacterial regulatory proteins, luxR family INQ48_38530 PF13360 PQQ-like domain INQ48_38530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_38535 PF00171 Aldehyde dehydrogenase family INQ48_38565 PF01613 Flavin reductase like domain INQ48_38575 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38580 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38585 PF00005 ABC transporter INQ48_38585 PF08402 TOBE domain INQ48_38590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INQ48_38595 PF00392 Bacterial regulatory proteins, gntR family INQ48_38595 PF07729 FCD domain INQ48_38600 PF00042 Globin INQ48_38600 PF00175 Oxidoreductase NAD-binding domain INQ48_38600 PF00970 Oxidoreductase FAD-binding domain INQ48_38605 PF02954 Bacterial regulatory protein, Fis family INQ48_38605 PF00158 Sigma-54 interaction domain INQ48_38610 PF00392 Bacterial regulatory proteins, gntR family INQ48_38610 PF00155 Aminotransferase class I and II INQ48_38630 PF00072 Response regulator receiver domain INQ48_38630 PF00196 Bacterial regulatory proteins, luxR family INQ48_38645 PF04115 Ureidoglycolate lyase INQ48_38650 PF16363 GDP-mannose 4,6 dehydratase INQ48_38655 PF00005 ABC transporter INQ48_38655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_38660 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38660 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_38665 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_38675 PF00449 Urease alpha-subunit, N-terminal domain INQ48_38675 PF01979 Amidohydrolase family INQ48_38685 PF00360 Phytochrome region INQ48_38685 PF08446 PAS fold INQ48_38685 PF00512 His Kinase A (phospho-acceptor) domain INQ48_38685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_38685 PF01590 GAF domain INQ48_38700 PF00037 4Fe-4S binding domain INQ48_38700 PF11953 Domain of unknown function (DUF3470) INQ48_38715 PF00069 Protein kinase domain INQ48_38715 PF03793 PASTA domain INQ48_38720 PF02798 Glutathione S-transferase, N-terminal domain INQ48_38725 PF12833 Helix-turn-helix domain INQ48_38730 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38735 PF00753 Metallo-beta-lactamase superfamily INQ48_38745 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_38755 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38760 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38765 PF00356 Bacterial regulatory proteins, lacI family INQ48_38775 PF00815 Histidinol dehydrogenase INQ48_38780 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_38780 PF01627 Hpt domain INQ48_38780 PF00512 His Kinase A (phospho-acceptor) domain INQ48_38780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_38780 PF00072 Response regulator receiver domain INQ48_38785 PF02515 CoA-transferase family III INQ48_38790 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_38800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_38800 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_38800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_38805 PF00378 Enoyl-CoA hydratase/isomerase INQ48_38815 PF03466 LysR substrate binding domain INQ48_38815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38820 PF07690 Major Facilitator Superfamily INQ48_38835 PF00378 Enoyl-CoA hydratase/isomerase INQ48_38840 PF03104 DNA polymerase family B, exonuclease domain INQ48_38840 PF00136 DNA polymerase family B INQ48_38845 PF00155 Aminotransferase class I and II INQ48_38845 PF00392 Bacterial regulatory proteins, gntR family INQ48_38850 PF00892 EamA-like transporter family INQ48_38855 PF13458 Periplasmic binding protein INQ48_38860 PF08386 TAP-like protein INQ48_38860 PF00561 alpha/beta hydrolase fold INQ48_38875 PF00072 Response regulator receiver domain INQ48_38875 PF00486 Transcriptional regulatory protein, C terminal INQ48_38880 PF00512 His Kinase A (phospho-acceptor) domain INQ48_38880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_38890 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_38895 PF08402 TOBE domain INQ48_38895 PF00005 ABC transporter INQ48_38900 PF07729 FCD domain INQ48_38900 PF00392 Bacterial regulatory proteins, gntR family INQ48_38905 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INQ48_38910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INQ48_38915 PF03480 Bacterial extracellular solute-binding protein, family 7 INQ48_38920 PF03737 Aldolase/RraA INQ48_38925 PF00294 pfkB family carbohydrate kinase INQ48_38930 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_38940 PF09084 NMT1/THI5 like INQ48_38945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38945 PF03466 LysR substrate binding domain INQ48_38950 PF00970 Oxidoreductase FAD-binding domain INQ48_38950 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_38950 PF00175 Oxidoreductase NAD-binding domain INQ48_38960 PF03466 LysR substrate binding domain INQ48_38960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38970 PF03466 LysR substrate binding domain INQ48_38970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_38975 PF03466 LysR substrate binding domain INQ48_38980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_38985 PF02321 Outer membrane efflux protein INQ48_38990 PF00873 AcrB/AcrD/AcrF family INQ48_38995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_39000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39000 PF03466 LysR substrate binding domain INQ48_39005 PF02798 Glutathione S-transferase, N-terminal domain INQ48_39010 PF02798 Glutathione S-transferase, N-terminal domain INQ48_39010 PF00043 Glutathione S-transferase, C-terminal domain INQ48_39025 PF17912 MalK OB fold domain INQ48_39025 PF00005 ABC transporter INQ48_39025 PF03459 TOBE domain INQ48_39030 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39035 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39045 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_39050 PF00005 ABC transporter INQ48_39055 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39060 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39075 PF03466 LysR substrate binding domain INQ48_39085 PF00005 ABC transporter INQ48_39090 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39095 PF00465 Iron-containing alcohol dehydrogenase INQ48_39100 PF01965 DJ-1/PfpI family INQ48_39100 PF12833 Helix-turn-helix domain INQ48_39105 PF01965 DJ-1/PfpI family INQ48_39105 PF12833 Helix-turn-helix domain INQ48_39120 PF01494 FAD binding domain INQ48_39130 PF03971 Monomeric isocitrate dehydrogenase INQ48_39135 PF00072 Response regulator receiver domain INQ48_39135 PF00196 Bacterial regulatory proteins, luxR family INQ48_39140 PF07690 Major Facilitator Superfamily INQ48_39145 PF07730 Histidine kinase INQ48_39145 PF17200 Single Cache domain 2 INQ48_39150 PF00890 FAD binding domain INQ48_39155 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_39155 PF00107 Zinc-binding dehydrogenase INQ48_39160 PF02515 CoA-transferase family III INQ48_39165 PF00067 Cytochrome P450 INQ48_39175 PF00196 Bacterial regulatory proteins, luxR family INQ48_39175 PF00072 Response regulator receiver domain INQ48_39180 PF00512 His Kinase A (phospho-acceptor) domain INQ48_39180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_39185 PF00759 Glycosyl hydrolase family 9 INQ48_39185 PF02927 Cellulase N-terminal ig-like domain INQ48_39185 PF07679 Immunoglobulin I-set domain INQ48_39185 PF02018 Carbohydrate binding domain INQ48_39200 PF07331 Tripartite tricarboxylate transporter TctB family INQ48_39205 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_39215 PF13458 Periplasmic binding protein INQ48_39220 PF02653 Branched-chain amino acid transport system / permease component INQ48_39230 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_39230 PF00005 ABC transporter INQ48_39235 PF00005 ABC transporter INQ48_39240 PF00456 Transketolase, thiamine diphosphate binding domain INQ48_39245 PF02779 Transketolase, pyrimidine binding domain INQ48_39245 PF02780 Transketolase, C-terminal domain INQ48_39250 PF00465 Iron-containing alcohol dehydrogenase INQ48_39260 PF13193 AMP-binding enzyme C-terminal domain INQ48_39260 PF00501 AMP-binding enzyme INQ48_39265 PF00107 Zinc-binding dehydrogenase INQ48_39265 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_39270 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_39270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_39270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_39275 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_39275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_39275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_39280 PF00378 Enoyl-CoA hydratase/isomerase INQ48_39290 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39310 PF06441 Epoxide hydrolase N terminus INQ48_39315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INQ48_39330 PF00005 ABC transporter INQ48_39330 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_39335 PF00005 ABC transporter INQ48_39340 PF02653 Branched-chain amino acid transport system / permease component INQ48_39345 PF11862 Domain of unknown function (DUF3382) INQ48_39345 PF02653 Branched-chain amino acid transport system / permease component INQ48_39350 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_39375 PF00067 Cytochrome P450 INQ48_39430 PF07690 Major Facilitator Superfamily INQ48_39455 PF01381 Helix-turn-helix INQ48_39455 PF08671 Anti-repressor SinI INQ48_39460 PF00005 ABC transporter INQ48_39470 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39475 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_39480 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_39490 PF03466 LysR substrate binding domain INQ48_39490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39500 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39510 PF05593 RHS Repeat INQ48_39510 PF03527 RHS protein INQ48_39520 PF06715 Gp5 C-terminal repeat (3 copies) INQ48_39520 PF04717 Type VI secretion system, phage-baseplate injector INQ48_39525 PF01965 DJ-1/PfpI family INQ48_39530 PF12823 Domain of unknown function (DUF3817) INQ48_39540 PF00857 Isochorismatase family INQ48_39545 PF14525 AraC-binding-like domain INQ48_39545 PF12833 Helix-turn-helix domain INQ48_39580 PF00067 Cytochrome P450 INQ48_39590 PF02653 Branched-chain amino acid transport system / permease component INQ48_39595 PF11862 Domain of unknown function (DUF3382) INQ48_39595 PF02653 Branched-chain amino acid transport system / permease component INQ48_39600 PF00005 ABC transporter INQ48_39600 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_39605 PF00005 ABC transporter INQ48_39610 PF00171 Aldehyde dehydrogenase family INQ48_39615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39615 PF03466 LysR substrate binding domain INQ48_39620 PF05973 Phage derived protein Gp49-like (DUF891) INQ48_39630 PF01909 Nucleotidyltransferase domain INQ48_39630 PF13427 Domain of unknown function (DUF4111) INQ48_39660 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_39670 PF07690 Major Facilitator Superfamily INQ48_39675 PF01925 Sulfite exporter TauE/SafE INQ48_39680 PF01979 Amidohydrolase family INQ48_39700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39705 PF01494 FAD binding domain INQ48_39725 PF03358 NADPH-dependent FMN reductase INQ48_39735 PF13460 NAD(P)H-binding INQ48_39745 PF07690 Major Facilitator Superfamily INQ48_39755 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_39760 PF00107 Zinc-binding dehydrogenase INQ48_39760 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_39790 PF00583 Acetyltransferase (GNAT) family INQ48_39825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39825 PF03466 LysR substrate binding domain INQ48_39845 PF07690 Major Facilitator Superfamily INQ48_39855 PF00501 AMP-binding enzyme INQ48_39855 PF13193 AMP-binding enzyme C-terminal domain INQ48_39865 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39870 PF03466 LysR substrate binding domain INQ48_39910 PF01850 PIN domain INQ48_39925 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39935 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_39940 PF03328 HpcH/HpaI aldolase/citrate lyase family INQ48_39945 PF02515 CoA-transferase family III INQ48_39955 PF00857 Isochorismatase family INQ48_39960 PF05199 GMC oxidoreductase INQ48_39960 PF00732 GMC oxidoreductase INQ48_39965 PF07859 alpha/beta hydrolase fold INQ48_39970 PF03466 LysR substrate binding domain INQ48_39970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_39985 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40000 PF07992 Pyridine nucleotide-disulphide oxidoreductase INQ48_40000 PF14759 Reductase C-terminal INQ48_40030 PF13417 Glutathione S-transferase, N-terminal domain INQ48_40035 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_40035 PF00107 Zinc-binding dehydrogenase INQ48_40050 PF00005 ABC transporter INQ48_40050 PF08402 TOBE domain INQ48_40055 PF02515 CoA-transferase family III INQ48_40060 PF00378 Enoyl-CoA hydratase/isomerase INQ48_40070 PF01627 Hpt domain INQ48_40070 PF00072 Response regulator receiver domain INQ48_40070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_40070 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_40070 PF00512 His Kinase A (phospho-acceptor) domain INQ48_40070 PF00989 PAS fold INQ48_40075 PF02694 Uncharacterised BCR, YnfA/UPF0060 family INQ48_40080 PF00793 DAHP synthetase I family INQ48_40090 PF00793 DAHP synthetase I family INQ48_40095 PF02525 Flavodoxin-like fold INQ48_40110 PF18364 Molybdopterin oxidoreductase N-terminal domain INQ48_40110 PF00384 Molybdopterin oxidoreductase INQ48_40110 PF01568 Molydopterin dinucleotide binding domain INQ48_40120 PF00005 ABC transporter INQ48_40125 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40140 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40145 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40145 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_40150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_40150 PF00005 ABC transporter INQ48_40155 PF09084 NMT1/THI5 like INQ48_40160 PF03180 NLPA lipoprotein INQ48_40165 PF00005 ABC transporter INQ48_40165 PF09383 NIL domain INQ48_40170 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_40175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_40185 PF00005 ABC transporter INQ48_40190 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40195 PF07969 Amidohydrolase family INQ48_40200 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_40205 PF00005 ABC transporter INQ48_40220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40220 PF03466 LysR substrate binding domain INQ48_40230 PF08028 Acyl-CoA dehydrogenase, C-terminal domain INQ48_40230 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_40230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_40235 PF03358 NADPH-dependent FMN reductase INQ48_40245 PF00296 Luciferase-like monooxygenase INQ48_40250 PF00296 Luciferase-like monooxygenase INQ48_40255 PF00296 Luciferase-like monooxygenase INQ48_40270 PF01042 Endoribonuclease L-PSP INQ48_40275 PF08281 Sigma-70, region 4 INQ48_40275 PF04542 Sigma-70 region 2 INQ48_40280 PF04773 FecR protein INQ48_40280 PF16220 Domain of unknown function (DUF4880) INQ48_40285 PF07715 TonB-dependent Receptor Plug Domain INQ48_40285 PF00593 TonB dependent receptor INQ48_40320 PF00171 Aldehyde dehydrogenase family INQ48_40325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40325 PF03466 LysR substrate binding domain INQ48_40330 PF12320 Type 5 capsule protein repressor C-terminal domain INQ48_40330 PF00149 Calcineurin-like phosphoesterase INQ48_40345 PF00893 Small Multidrug Resistance protein INQ48_40350 PF02627 Carboxymuconolactone decarboxylase family INQ48_40355 PF00392 Bacterial regulatory proteins, gntR family INQ48_40355 PF00155 Aminotransferase class I and II INQ48_40360 PF02525 Flavodoxin-like fold INQ48_40365 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_40370 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40375 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40385 PF00866 Ring hydroxylating beta subunit INQ48_40395 PF00355 Rieske [2Fe-2S] domain INQ48_40395 PF00848 Ring hydroxylating alpha subunit (catalytic domain) INQ48_40400 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_40400 PF00970 Oxidoreductase FAD-binding domain INQ48_40400 PF00175 Oxidoreductase NAD-binding domain INQ48_40405 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40425 PF00107 Zinc-binding dehydrogenase INQ48_40425 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_40435 PF15975 Flotillin INQ48_40435 PF01145 SPFH domain / Band 7 family INQ48_40440 PF09370 Phosphoenolpyruvate hydrolase-like INQ48_40450 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_40450 PF00005 ABC transporter INQ48_40465 PF02653 Branched-chain amino acid transport system / permease component INQ48_40470 PF01979 Amidohydrolase family INQ48_40480 PF12697 Alpha/beta hydrolase family INQ48_40485 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_40490 PF07859 alpha/beta hydrolase fold INQ48_40495 PF07859 alpha/beta hydrolase fold INQ48_40505 PF00107 Zinc-binding dehydrogenase INQ48_40505 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_40510 PF00171 Aldehyde dehydrogenase family INQ48_40525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40525 PF03466 LysR substrate binding domain INQ48_40530 PF13460 NAD(P)H-binding INQ48_40540 PF00857 Isochorismatase family INQ48_40545 PF03466 LysR substrate binding domain INQ48_40545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40565 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40575 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_40575 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_40575 PF00107 Zinc-binding dehydrogenase INQ48_40575 PF00550 Phosphopantetheine attachment site INQ48_40575 PF08659 KR domain INQ48_40575 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_40575 PF00698 Acyl transferase domain INQ48_40575 PF14765 Polyketide synthase dehydratase INQ48_40575 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_40580 PF02515 CoA-transferase family III INQ48_40585 PF01575 MaoC like domain INQ48_40590 PF02803 Thiolase, C-terminal domain INQ48_40590 PF00108 Thiolase, N-terminal domain INQ48_40600 PF00378 Enoyl-CoA hydratase/isomerase INQ48_40605 PF00106 short chain dehydrogenase INQ48_40615 PF13458 Periplasmic binding protein INQ48_40620 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_40620 PF00005 ABC transporter INQ48_40625 PF00005 ABC transporter INQ48_40630 PF02653 Branched-chain amino acid transport system / permease component INQ48_40635 PF11862 Domain of unknown function (DUF3382) INQ48_40635 PF02653 Branched-chain amino acid transport system / permease component INQ48_40640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_40640 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_40640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_40650 PF00501 AMP-binding enzyme INQ48_40650 PF14535 AMP-binding enzyme C-terminal domain INQ48_40655 PF02515 CoA-transferase family III INQ48_40665 PF02515 CoA-transferase family III INQ48_40670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40670 PF03466 LysR substrate binding domain INQ48_40675 PF00171 Aldehyde dehydrogenase family INQ48_40685 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40690 PF00561 alpha/beta hydrolase fold INQ48_40695 PF01614 Bacterial transcriptional regulator INQ48_40695 PF09339 IclR helix-turn-helix domain INQ48_40700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40705 PF00378 Enoyl-CoA hydratase/isomerase INQ48_40710 PF13380 CoA binding domain INQ48_40710 PF13607 Succinyl-CoA ligase like flavodoxin domain INQ48_40725 PF00639 PPIC-type PPIASE domain INQ48_40725 PF09312 SurA N-terminal domain INQ48_40755 PF12833 Helix-turn-helix domain INQ48_40780 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40795 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40800 PF00682 HMGL-like INQ48_40805 PF02515 CoA-transferase family III INQ48_40810 PF00158 Sigma-54 interaction domain INQ48_40810 PF02954 Bacterial regulatory protein, Fis family INQ48_40810 PF06506 Propionate catabolism activator INQ48_40815 PF01381 Helix-turn-helix INQ48_40825 PF00593 TonB dependent receptor INQ48_40825 PF07715 TonB-dependent Receptor Plug Domain INQ48_40850 PF13632 Glycosyl transferase family group 2 INQ48_40850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain INQ48_40860 PF02350 UDP-N-acetylglucosamine 2-epimerase INQ48_40865 PF00561 alpha/beta hydrolase fold INQ48_40875 PF03466 LysR substrate binding domain INQ48_40875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40880 PF00106 short chain dehydrogenase INQ48_40885 PF00881 Nitroreductase family INQ48_40905 PF07715 TonB-dependent Receptor Plug Domain INQ48_40905 PF07660 Secretin and TonB N terminus short domain INQ48_40905 PF00593 TonB dependent receptor INQ48_40910 PF00593 TonB dependent receptor INQ48_40910 PF07715 TonB-dependent Receptor Plug Domain INQ48_40915 PF04773 FecR protein INQ48_40915 PF16220 Domain of unknown function (DUF4880) INQ48_40925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion INQ48_40930 PF12704 MacB-like periplasmic core domain INQ48_40930 PF02687 FtsX-like permease family INQ48_40930 PF00005 ABC transporter INQ48_40940 PF03466 LysR substrate binding domain INQ48_40940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_40945 PF00330 Aconitase family (aconitate hydratase) INQ48_40950 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_40955 PF03737 Aldolase/RraA INQ48_40960 PF00990 Diguanylate cyclase, GGDEF domain INQ48_40960 PF00563 EAL domain INQ48_40960 PF03707 Bacterial signalling protein N terminal repeat INQ48_40965 PF00296 Luciferase-like monooxygenase INQ48_40970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_40985 PF00378 Enoyl-CoA hydratase/isomerase INQ48_40990 PF02515 CoA-transferase family III INQ48_40995 PF01425 Amidase INQ48_41005 PF00392 Bacterial regulatory proteins, gntR family INQ48_41005 PF07729 FCD domain INQ48_41010 PF03466 LysR substrate binding domain INQ48_41010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41020 PF07690 Major Facilitator Superfamily INQ48_41025 PF00512 His Kinase A (phospho-acceptor) domain INQ48_41025 PF08448 PAS fold INQ48_41025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_41025 PF00072 Response regulator receiver domain INQ48_41025 PF13188 PAS domain INQ48_41030 PF03466 LysR substrate binding domain INQ48_41030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41035 PF07690 Major Facilitator Superfamily INQ48_41040 PF00563 EAL domain INQ48_41040 PF00990 Diguanylate cyclase, GGDEF domain INQ48_41040 PF03707 Bacterial signalling protein N terminal repeat INQ48_41055 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41060 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41065 PF00005 ABC transporter INQ48_41085 PF00857 Isochorismatase family INQ48_41095 PF03466 LysR substrate binding domain INQ48_41095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41110 PF01475 Ferric uptake regulator family INQ48_41130 PF12951 Passenger-associated-transport-repeat INQ48_41135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41135 PF03466 LysR substrate binding domain INQ48_41140 PF00171 Aldehyde dehydrogenase family INQ48_41145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INQ48_41145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase INQ48_41155 PF00005 ABC transporter INQ48_41155 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_41160 PF00005 ABC transporter INQ48_41160 PF09383 NIL domain INQ48_41165 PF02653 Branched-chain amino acid transport system / permease component INQ48_41185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INQ48_41185 PF07733 Bacterial DNA polymerase III alpha NTPase domain INQ48_41185 PF01336 OB-fold nucleic acid binding domain INQ48_41185 PF02811 PHP domain INQ48_41185 PF14579 Helix-hairpin-helix motif INQ48_41190 PF03466 LysR substrate binding domain INQ48_41190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41195 PF07690 Major Facilitator Superfamily INQ48_41195 PF00083 Sugar (and other) transporter INQ48_41200 PF01522 Polysaccharide deacetylase INQ48_41210 PF02515 CoA-transferase family III INQ48_41215 PF00890 FAD binding domain INQ48_41230 PF02515 CoA-transferase family III INQ48_41235 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41240 PF00392 Bacterial regulatory proteins, gntR family INQ48_41240 PF07729 FCD domain INQ48_41245 PF00970 Oxidoreductase FAD-binding domain INQ48_41245 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_41250 PF00355 Rieske [2Fe-2S] domain INQ48_41260 PF05977 Transmembrane secretion effector INQ48_41265 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41270 PF00392 Bacterial regulatory proteins, gntR family INQ48_41270 PF07729 FCD domain INQ48_41275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_41275 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_41275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_41280 PF00392 Bacterial regulatory proteins, gntR family INQ48_41280 PF07729 FCD domain INQ48_41285 PF01144 Coenzyme A transferase INQ48_41290 PF01144 Coenzyme A transferase INQ48_41295 PF02515 CoA-transferase family III INQ48_41300 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41320 PF00501 AMP-binding enzyme INQ48_41320 PF13193 AMP-binding enzyme C-terminal domain INQ48_41335 PF00378 Enoyl-CoA hydratase/isomerase INQ48_41340 PF01575 MaoC like domain INQ48_41355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_41355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_41355 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_41360 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_41360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_41360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_41375 PF13193 AMP-binding enzyme C-terminal domain INQ48_41375 PF00501 AMP-binding enzyme INQ48_41380 PF00378 Enoyl-CoA hydratase/isomerase INQ48_41385 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_41385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_41385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_41390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_41390 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_41390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_41395 PF00356 Bacterial regulatory proteins, lacI family INQ48_41400 PF13193 AMP-binding enzyme C-terminal domain INQ48_41400 PF00501 AMP-binding enzyme INQ48_41405 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41420 PF00171 Aldehyde dehydrogenase family INQ48_41425 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41430 PF05199 GMC oxidoreductase INQ48_41430 PF00732 GMC oxidoreductase INQ48_41435 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41460 PF00392 Bacterial regulatory proteins, gntR family INQ48_41460 PF07729 FCD domain INQ48_41465 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41470 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_41475 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41480 PF07883 Cupin domain INQ48_41490 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41495 PF00106 short chain dehydrogenase INQ48_41500 PF13458 Periplasmic binding protein INQ48_41505 PF02653 Branched-chain amino acid transport system / permease component INQ48_41510 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_41510 PF00005 ABC transporter INQ48_41515 PF00005 ABC transporter INQ48_41530 PF04303 PrpF protein INQ48_41545 PF01134 Glucose inhibited division protein A INQ48_41545 PF13932 GidA associated domain INQ48_41550 PF01494 FAD binding domain INQ48_41555 PF14537 Cytochrome c3 INQ48_41555 PF00890 FAD binding domain INQ48_41575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41575 PF03466 LysR substrate binding domain INQ48_41580 PF00271 Helicase conserved C-terminal domain INQ48_41580 PF08494 DEAD/H associated INQ48_41580 PF00270 DEAD/DEAH box helicase INQ48_41585 PF02308 MgtC family INQ48_41590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_41590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_41590 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_41610 PF01965 DJ-1/PfpI family INQ48_41610 PF12833 Helix-turn-helix domain INQ48_41655 PF00384 Molybdopterin oxidoreductase INQ48_41680 PF00171 Aldehyde dehydrogenase family INQ48_41685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_41685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_41695 PF03466 LysR substrate binding domain INQ48_41695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41700 PF02626 Carboxyltransferase domain, subdomain A and B INQ48_41710 PF03746 LamB/YcsF family INQ48_41730 PF02525 Flavodoxin-like fold INQ48_41740 PF07702 UTRA domain INQ48_41740 PF00392 Bacterial regulatory proteins, gntR family INQ48_41745 PF00005 ABC transporter INQ48_41750 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41755 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_41760 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_41770 PF07729 FCD domain INQ48_41770 PF00392 Bacterial regulatory proteins, gntR family INQ48_41775 PF03466 LysR substrate binding domain INQ48_41775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41780 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_41785 PF00005 ABC transporter INQ48_41790 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41795 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41800 PF00795 Carbon-nitrogen hydrolase INQ48_41805 PF01979 Amidohydrolase family INQ48_41810 PF01177 Asp/Glu/Hydantoin racemase INQ48_41815 PF01177 Asp/Glu/Hydantoin racemase INQ48_41820 PF02634 FdhD/NarQ family INQ48_41825 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region INQ48_41825 PF01568 Molydopterin dinucleotide binding domain INQ48_41825 PF00384 Molybdopterin oxidoreductase INQ48_41825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_41825 PF12838 4Fe-4S dicluster domain INQ48_41830 PF10531 SLBB domain INQ48_41830 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit INQ48_41830 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region INQ48_41860 PF01568 Molydopterin dinucleotide binding domain INQ48_41860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INQ48_41860 PF00384 Molybdopterin oxidoreductase INQ48_41865 PF13247 4Fe-4S dicluster domain INQ48_41885 PF00994 Probable molybdopterin binding domain INQ48_41885 PF03454 MoeA C-terminal region (domain IV) INQ48_41885 PF03453 MoeA N-terminal region (domain I and II) INQ48_41890 PF03453 MoeA N-terminal region (domain I and II) INQ48_41890 PF03454 MoeA C-terminal region (domain IV) INQ48_41890 PF00994 Probable molybdopterin binding domain INQ48_41895 PF12849 PBP superfamily domain INQ48_41900 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_41905 PF00664 ABC transporter transmembrane region INQ48_41905 PF00005 ABC transporter INQ48_41910 PF03466 LysR substrate binding domain INQ48_41910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_41920 PF02321 Outer membrane efflux protein INQ48_41925 PF00873 AcrB/AcrD/AcrF family INQ48_41935 PF00486 Transcriptional regulatory protein, C terminal INQ48_41935 PF00072 Response regulator receiver domain INQ48_41940 PF00512 His Kinase A (phospho-acceptor) domain INQ48_41940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_41940 PF00672 HAMP domain INQ48_41955 PF02669 K+-transporting ATPase, c chain INQ48_41965 PF03814 Potassium-transporting ATPase A subunit INQ48_41975 PF00155 Aminotransferase class I and II INQ48_41975 PF00392 Bacterial regulatory proteins, gntR family INQ48_41980 PF00155 Aminotransferase class I and II INQ48_41985 PF02567 Phenazine biosynthesis-like protein INQ48_41990 PF00419 Fimbrial protein INQ48_41995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain INQ48_41995 PF02753 Pili assembly chaperone PapD, C-terminal domain INQ48_42000 PF00577 Outer membrane usher protein INQ48_42000 PF13953 PapC C-terminal domain INQ48_42000 PF13954 PapC N-terminal domain INQ48_42010 PF00486 Transcriptional regulatory protein, C terminal INQ48_42010 PF00072 Response regulator receiver domain INQ48_42020 PF13193 AMP-binding enzyme C-terminal domain INQ48_42020 PF00501 AMP-binding enzyme INQ48_42025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain INQ48_42025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain INQ48_42030 PF01627 Hpt domain INQ48_42030 PF00512 His Kinase A (phospho-acceptor) domain INQ48_42030 PF17149 Periplasmic sensor domain found in signal transduction proteins INQ48_42030 PF00672 HAMP domain INQ48_42030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INQ48_42030 PF00072 Response regulator receiver domain INQ48_42035 PF01979 Amidohydrolase family INQ48_42040 PF00561 alpha/beta hydrolase fold INQ48_42040 PF08386 TAP-like protein INQ48_42045 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_42055 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42060 PF00440 Bacterial regulatory proteins, tetR family INQ48_42065 PF07519 Tannase and feruloyl esterase INQ48_42070 PF01026 TatD related DNase INQ48_42090 PF08671 Anti-repressor SinI INQ48_42090 PF01381 Helix-turn-helix INQ48_42095 PF00596 Class II Aldolase and Adducin N-terminal domain INQ48_42100 PF03466 LysR substrate binding domain INQ48_42100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_42105 PF00107 Zinc-binding dehydrogenase INQ48_42105 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_42110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INQ48_42110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INQ48_42110 PF00205 Thiamine pyrophosphate enzyme, central domain INQ48_42115 PF01144 Coenzyme A transferase INQ48_42120 PF01144 Coenzyme A transferase INQ48_42125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INQ48_42125 PF02770 Acyl-CoA dehydrogenase, middle domain INQ48_42125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INQ48_42130 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42135 PF01053 Cys/Met metabolism PLP-dependent enzyme INQ48_42140 PF00005 ABC transporter INQ48_42145 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42150 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42155 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_42170 PF00106 short chain dehydrogenase INQ48_42190 PF12833 Helix-turn-helix domain INQ48_42195 PF12804 MobA-like NTP transferase domain INQ48_42205 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42210 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_42220 PF01494 FAD binding domain INQ48_42230 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42245 PF00717 Peptidase S24-like INQ48_42245 PF01381 Helix-turn-helix INQ48_42255 PF00109 Beta-ketoacyl synthase, N-terminal domain INQ48_42255 PF00668 Condensation domain INQ48_42255 PF00501 AMP-binding enzyme INQ48_42255 PF16197 Ketoacyl-synthetase C-terminal extension INQ48_42255 PF02801 Beta-ketoacyl synthase, C-terminal domain INQ48_42255 PF00550 Phosphopantetheine attachment site INQ48_42255 PF00202 Aminotransferase class-III INQ48_42255 PF13193 AMP-binding enzyme C-terminal domain INQ48_42260 PF00975 Thioesterase domain INQ48_42260 PF00668 Condensation domain INQ48_42260 PF13193 AMP-binding enzyme C-terminal domain INQ48_42260 PF00501 AMP-binding enzyme INQ48_42260 PF00550 Phosphopantetheine attachment site INQ48_42280 PF10531 SLBB domain INQ48_42280 PF02563 Polysaccharide biosynthesis/export protein INQ48_42285 PF13614 AAA domain INQ48_42285 PF13807 G-rich domain on putative tyrosine kinase INQ48_42285 PF02706 Chain length determinant protein INQ48_42290 PF02397 Bacterial sugar transferase INQ48_42295 PF01370 NAD dependent epimerase/dehydratase family INQ48_42325 PF13579 Glycosyl transferase 4-like domain INQ48_42325 PF00534 Glycosyl transferases group 1 INQ48_42330 PF16363 GDP-mannose 4,6 dehydratase INQ48_42335 PF00072 Response regulator receiver domain INQ48_42335 PF00196 Bacterial regulatory proteins, luxR family INQ48_42340 PF01050 Mannose-6-phosphate isomerase INQ48_42340 PF00483 Nucleotidyl transferase INQ48_42345 PF16363 GDP-mannose 4,6 dehydratase INQ48_42350 PF00196 Bacterial regulatory proteins, luxR family INQ48_42350 PF00072 Response regulator receiver domain INQ48_42355 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain INQ48_42355 PF10091 Putative glucoamylase INQ48_42355 PF06165 Glycosyltransferase family 36 INQ48_42375 PF00501 AMP-binding enzyme INQ48_42375 PF13193 AMP-binding enzyme C-terminal domain INQ48_42375 PF16177 Acetyl-coenzyme A synthetase N-terminus INQ48_42385 PF16655 PhoD-like phosphatase, N-terminal domain INQ48_42385 PF09423 PhoD-like phosphatase INQ48_42390 PF13609 Gram-negative porin INQ48_42400 PF00149 Calcineurin-like phosphoesterase INQ48_42405 PF00005 ABC transporter INQ48_42405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_42410 PF12911 N-terminal TM domain of oligopeptide transport permease C INQ48_42410 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42415 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_42425 PF00171 Aldehyde dehydrogenase family INQ48_42430 PF00465 Iron-containing alcohol dehydrogenase INQ48_42435 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase INQ48_42440 PF01425 Amidase INQ48_42445 PF09383 NIL domain INQ48_42445 PF00005 ABC transporter INQ48_42450 PF00005 ABC transporter INQ48_42460 PF02653 Branched-chain amino acid transport system / permease component INQ48_42485 PF11612 Type II secretion system (T2SS), protein J INQ48_42485 PF07963 Prokaryotic N-terminal methylation motif INQ48_42495 PF12019 Type II transport protein GspH INQ48_42495 PF07963 Prokaryotic N-terminal methylation motif INQ48_42540 PF00501 AMP-binding enzyme INQ48_42540 PF13193 AMP-binding enzyme C-terminal domain INQ48_42545 PF00501 AMP-binding enzyme INQ48_42545 PF13193 AMP-binding enzyme C-terminal domain INQ48_42560 PF00106 short chain dehydrogenase INQ48_42575 PF00202 Aminotransferase class-III INQ48_42590 PF01968 Hydantoinase/oxoprolinase INQ48_42590 PF05378 Hydantoinase/oxoprolinase N-terminal region INQ48_42615 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42625 PF01970 Tripartite tricarboxylate transporter TctA family INQ48_42630 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_42630 PF00550 Phosphopantetheine attachment site INQ48_42630 PF14765 Polyketide synthase dehydratase INQ48_42630 PF08659 KR domain INQ48_42630 PF00698 Acyl transferase domain INQ48_42640 PF05368 NmrA-like family INQ48_42655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_42655 PF03466 LysR substrate binding domain INQ48_42660 PF00753 Metallo-beta-lactamase superfamily INQ48_42665 PF02515 CoA-transferase family III INQ48_42675 PF00202 Aminotransferase class-III INQ48_42680 PF00155 Aminotransferase class I and II INQ48_42690 PF13416 Bacterial extracellular solute-binding protein INQ48_42695 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42695 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_42700 PF08402 TOBE domain INQ48_42700 PF00005 ABC transporter INQ48_42715 PF00266 Aminotransferase class-V INQ48_42725 PF07063 Domain of unknown function (DUF1338) INQ48_42730 PF01565 FAD binding domain INQ48_42735 PF00155 Aminotransferase class I and II INQ48_42740 PF13416 Bacterial extracellular solute-binding protein INQ48_42745 PF01012 Electron transfer flavoprotein domain INQ48_42750 PF01012 Electron transfer flavoprotein domain INQ48_42750 PF00766 Electron transfer flavoprotein FAD-binding domain INQ48_42775 PF01042 Endoribonuclease L-PSP INQ48_42785 PF00144 Beta-lactamase INQ48_42805 PF01266 FAD dependent oxidoreductase INQ48_42810 PF00144 Beta-lactamase INQ48_42815 PF07676 WD40-like Beta Propeller Repeat INQ48_42815 PF00326 Prolyl oligopeptidase family INQ48_42825 PF00174 Oxidoreductase molybdopterin binding domain INQ48_42830 PF01292 Prokaryotic cytochrome b561 INQ48_42840 PF00440 Bacterial regulatory proteins, tetR family INQ48_42840 PF17932 Tetracyclin repressor-like, C-terminal domain INQ48_42850 PF00005 ABC transporter INQ48_42855 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_42855 PF00005 ABC transporter INQ48_42860 PF11862 Domain of unknown function (DUF3382) INQ48_42860 PF02653 Branched-chain amino acid transport system / permease component INQ48_42865 PF02653 Branched-chain amino acid transport system / permease component INQ48_42870 PF00291 Pyridoxal-phosphate dependent enzyme INQ48_42870 PF00585 C-terminal regulatory domain of Threonine dehydratase INQ48_42875 PF00795 Carbon-nitrogen hydrolase INQ48_42880 PF09339 IclR helix-turn-helix domain INQ48_42880 PF01614 Bacterial transcriptional regulator INQ48_42900 PF13005 zinc-finger binding domain of transposase IS66 INQ48_42900 PF13007 Transposase C of IS166 homeodomain INQ48_42900 PF03050 Transposase IS66 family INQ48_42900 PF13817 IS66 C-terminal element INQ48_42920 PF07969 Amidohydrolase family INQ48_42925 PF01418 Helix-turn-helix domain, rpiR family INQ48_42925 PF01380 SIS domain INQ48_42930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INQ48_42930 PF12793 Sugar transport-related sRNA regulator N-term INQ48_42945 PF13458 Periplasmic binding protein INQ48_42950 PF02653 Branched-chain amino acid transport system / permease component INQ48_42955 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_42955 PF00005 ABC transporter INQ48_42960 PF00005 ABC transporter INQ48_42965 PF00171 Aldehyde dehydrogenase family INQ48_42975 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_42980 PF00107 Zinc-binding dehydrogenase INQ48_42980 PF08240 Alcohol dehydrogenase GroES-like domain INQ48_42985 PF13193 AMP-binding enzyme C-terminal domain INQ48_42985 PF00501 AMP-binding enzyme INQ48_42985 PF16177 Acetyl-coenzyme A synthetase N-terminus INQ48_43000 PF13817 IS66 C-terminal element INQ48_43000 PF13007 Transposase C of IS166 homeodomain INQ48_43000 PF13005 zinc-finger binding domain of transposase IS66 INQ48_43000 PF03050 Transposase IS66 family INQ48_43015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_43015 PF03466 LysR substrate binding domain INQ48_43020 PF08450 SMP-30/Gluconolactonase/LRE-like region INQ48_43095 PF02811 PHP domain INQ48_43095 PF14579 Helix-hairpin-helix motif INQ48_43095 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INQ48_43095 PF07733 Bacterial DNA polymerase III alpha NTPase domain INQ48_43145 PF13087 AAA domain INQ48_43145 PF13195 Protein of unknown function (DUF4011) INQ48_43145 PF13087 AAA domain INQ48_43145 PF13195 Protein of unknown function (DUF4011) INQ48_43145 PF13086 AAA domain INQ48_43145 PF13086 AAA domain INQ48_43155 PF02646 RmuC family INQ48_43175 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_43180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain INQ48_43180 PF00378 Enoyl-CoA hydratase/isomerase INQ48_43180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain INQ48_43190 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_43195 PF00034 Cytochrome c INQ48_43195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_43195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III INQ48_43200 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_43200 PF01799 [2Fe-2S] binding domain INQ48_43205 PF05853 beta-keto acid cleavage enzyme INQ48_43215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_43215 PF03466 LysR substrate binding domain INQ48_43220 PF07729 FCD domain INQ48_43220 PF00392 Bacterial regulatory proteins, gntR family INQ48_43235 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_43255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INQ48_43255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INQ48_43260 PF00005 ABC transporter INQ48_43265 PF00497 Bacterial extracellular solute-binding proteins, family 3 INQ48_43270 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_43275 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_43285 PF00920 Dehydratase family INQ48_43335 PF13005 zinc-finger binding domain of transposase IS66 INQ48_43335 PF13817 IS66 C-terminal element INQ48_43335 PF13007 Transposase C of IS166 homeodomain INQ48_43335 PF03050 Transposase IS66 family INQ48_43355 PF03466 LysR substrate binding domain INQ48_43355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_43360 PF00155 Aminotransferase class I and II INQ48_43370 PF03737 Aldolase/RraA INQ48_43390 PF03466 LysR substrate binding domain INQ48_43390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_43410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase INQ48_43410 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain INQ48_43415 PF01799 [2Fe-2S] binding domain INQ48_43415 PF00111 2Fe-2S iron-sulfur cluster binding domain INQ48_43420 PF03450 CO dehydrogenase flavoprotein C-terminal domain INQ48_43420 PF00941 FAD binding domain in molybdopterin dehydrogenase INQ48_43425 PF12146 Serine aminopeptidase, S33 INQ48_43430 PF00005 ABC transporter INQ48_43435 PF00005 ABC transporter INQ48_43435 PF12399 Branched-chain amino acid ATP-binding cassette transporter INQ48_43445 PF02653 Branched-chain amino acid transport system / permease component INQ48_43470 PF01548 Transposase INQ48_43470 PF02371 Transposase IS116/IS110/IS902 family INQ48_43480 PF01548 Transposase INQ48_43480 PF02371 Transposase IS116/IS110/IS902 family INQ48_43495 PF13614 AAA domain INQ48_43530 PF03783 Curli production assembly/transport component CsgG INQ48_43550 PF00990 Diguanylate cyclase, GGDEF domain INQ48_43550 PF03707 Bacterial signalling protein N terminal repeat INQ48_43550 PF00563 EAL domain INQ48_43675 PF00226 DnaJ domain INQ48_43675 PF00684 DnaJ central domain INQ48_43675 PF01556 DnaJ C terminal domain INQ48_43700 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_43710 PF02668 Taurine catabolism dioxygenase TauD, TfdA family INQ48_43725 PF01557 Fumarylacetoacetate (FAA) hydrolase family INQ48_43730 PF03401 Tripartite tricarboxylate transporter family receptor INQ48_43740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INQ48_43740 PF03466 LysR substrate binding domain INQ48_43765 PF12804 MobA-like NTP transferase domain INQ48_43765 PF00132 Bacterial transferase hexapeptide (six repeats) INQ48_43775 PF00202 Aminotransferase class-III INQ48_43800 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_43805 PF00528 Binding-protein-dependent transport system inner membrane component INQ48_43810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INQ48_43810 PF00005 ABC transporter INQ48_43815 PF00005 ABC transporter INQ48_43815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region