locus-tag	class	description
JVX96_00005	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
JVX96_00010	COG2205	protein histidine kinase activity
JVX96_00010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_00030	COG2205	protein histidine kinase activity
JVX96_00060	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JVX96_00075	COG2205	protein histidine kinase activity
JVX96_00080	COG0745	RESPONSE REGULATOR receiver
JVX96_00095	COG1289	transmembrane transporter activity
JVX96_00110	COG1959	2 iron, 2 sulfur cluster binding
JVX96_00120	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_00125	COG0583	DNA-binding transcription factor activity
JVX96_00130	COG4106	trans-aconitate 2-methyltransferase activity
JVX96_00140	COG0300	oxidoreductase activity
JVX96_00145	COG2207	Transcriptional regulator
JVX96_00170	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_00205	COG2814	Major facilitator Superfamily
JVX96_00210	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JVX96_00265	COG1801	Protein of unknown function DUF72
JVX96_00315	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JVX96_00320	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JVX96_00325	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JVX96_00340	COG1561	YicC-like family, N-terminal region
JVX96_00345	COG0194	GDP metabolic process
JVX96_00350	COG1758	RNA polymerase activity
JVX96_00355	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JVX96_00375	COG0583	DNA-binding transcription factor activity
JVX96_00385	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_00390	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_00420	COG0582	viral genome integration into host DNA
JVX96_00455	COG3039	Transposase
JVX96_00465	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_00470	COG0235	Class ii aldolase
JVX96_00490	COG0235	Class ii aldolase
JVX96_00495	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_00510	COG0411	ABC transporter
JVX96_00520	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_00535	COG0583	DNA-binding transcription factor activity
JVX96_00540	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_00545	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_00560	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_00570	COG0583	DNA-binding transcription factor activity
JVX96_00575	COG1024	Enoyl-CoA hydratase
JVX96_00590	COG1960	acyl-CoA dehydrogenase activity
JVX96_00595	COG3039	Transposase
JVX96_00610	COG3039	Transposase
JVX96_00695	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX96_00715	COG0210	DNA helicase
JVX96_00785	COG1420	regulation of RNA biosynthetic process
JVX96_00790	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JVX96_00795	COG0497	DNA recombination
JVX96_00800	COG1660	Displays ATPase and GTPase activities
JVX96_00810	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JVX96_00815	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JVX96_00830	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JVX96_00840	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JVX96_00845	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JVX96_00850	COG0193	aminoacyl-tRNA hydrolase activity
JVX96_00860	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JVX96_00870	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_00880	COG4608	Belongs to the ABC transporter superfamily
JVX96_00885	COG0747	negative chemotaxis
JVX96_00910	COG0346	lactoylglutathione lyase activity
JVX96_00925	COG0583	DNA-binding transcription factor activity
JVX96_00950	COG2267	carboxylic ester hydrolase activity
JVX96_00955	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_00960	COG1984	allophanate hydrolase subunit 2
JVX96_00965	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_00970	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JVX96_00975	COG0742	ribosomal rna small subunit methyltransferase
JVX96_00990	COG0612	Peptidase, M16
JVX96_00995	COG0612	Peptidase, M16
JVX96_01010	COG2205	protein histidine kinase activity
JVX96_01010	COG2198	Histidine kinase
JVX96_01010	COG0784	Response regulator, receiver
JVX96_01015	COG2197	response regulator
JVX96_01025	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JVX96_01030	COG4335	DNA alkylation repair
JVX96_01035	COG1999	signal sequence binding
JVX96_01040	COG0109	protoheme IX farnesyltransferase activity
JVX96_01075	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JVX96_01080	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JVX96_01085	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JVX96_01095	COG2226	methyltransferase
JVX96_01105	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JVX96_01140	COG1024	Enoyl-CoA hydratase
JVX96_01180	COG1960	acyl-CoA dehydrogenase activity
JVX96_01210	COG5507	3-demethylubiquinone-9 3-methyltransferase
JVX96_01220	COG3485	protocatechuate 3,4-dioxygenase
JVX96_01240	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
JVX96_01255	COG0430	RNA-3'-phosphate cyclase activity
JVX96_01260	COG3541	Predicted nucleotidyltransferase
JVX96_01265	COG1234	tRNA 3'-trailer cleavage
JVX96_01275	COG1690	Belongs to the RtcB family
JVX96_01290	COG4650	regulator
JVX96_01315	COG1073	alpha beta
JVX96_01350	COG0183	Belongs to the thiolase family
JVX96_01355	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JVX96_01365	COG1414	Transcriptional regulator
JVX96_01395	COG1137	ATPase activity
JVX96_01405	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_01425	COG3063	Type IV pilus biogenesis stability protein PilW
JVX96_01455	COG4964	Belongs to the GSP D family
JVX96_01515	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_01525	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JVX96_01545	COG0583	DNA-binding transcription factor activity
JVX96_01550	COG3485	protocatechuate 3,4-dioxygenase
JVX96_01555	COG3485	protocatechuate 3,4-dioxygenase
JVX96_01565	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX96_01615	COG0840	transmembrane signaling receptor activity
JVX96_01635	COG1902	pentaerythritol trinitrate reductase activity
JVX96_01640	COG0697	spore germination
JVX96_01670	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_01675	COG1053	succinate dehydrogenase
JVX96_01700	COG0540	Belongs to the ATCase OTCase family
JVX96_01705	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
JVX96_01710	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JVX96_01715	COG1678	Uncharacterized ACR, COG1678
JVX96_01720	COG0415	Belongs to the DNA photolyase family
JVX96_01725	COG0784	Response regulator, receiver
JVX96_01725	COG0643	Histidine kinase
JVX96_01725	COG2198	Histidine kinase
JVX96_01730	COG0840	transmembrane signaling receptor activity
JVX96_01750	COG1773	rubredoxin
JVX96_01760	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JVX96_01770	COG0138	bifunctional purine biosynthesis protein purh
JVX96_01780	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JVX96_01785	COG1238	metal cluster binding
JVX96_01805	COG0012	GTP binding
JVX96_01810	COG1879	ABC-type sugar transport system periplasmic component
JVX96_01815	COG1129	ABC transporter
JVX96_01820	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_01825	COG1609	Transcriptional regulator
JVX96_01830	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JVX96_01835	COG1869	D-ribose catabolic process
JVX96_01845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_01865	COG2076	Multidrug Resistance protein
JVX96_01870	COG1024	Enoyl-CoA hydratase
JVX96_01910	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_01920	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JVX96_01955	COG0183	Belongs to the thiolase family
JVX96_01965	COG2909	trisaccharide binding
JVX96_01990	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_01995	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_02000	COG1960	acyl-CoA dehydrogenase activity
JVX96_02005	COG1960	acyl-CoA dehydrogenase activity
JVX96_02025	COG2255	four-way junction helicase activity
JVX96_02030	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JVX96_02035	COG2267	carboxylic ester hydrolase activity
JVX96_02040	COG2453	phosphatase
JVX96_02040	COG0671	phosphoesterase, PA-phosphatase related
JVX96_02055	COG4589	Belongs to the CDS family
JVX96_02070	COG0632	four-way junction helicase activity
JVX96_02075	COG1702	phosphate starvation-inducible protein PhoH
JVX96_02080	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JVX96_02085	COG1490	D-aminoacyl-tRNA deacylase activity
JVX96_02090	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JVX96_02105	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JVX96_02115	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JVX96_02120	COG2814	Major facilitator Superfamily
JVX96_02125	COG0316	Belongs to the HesB IscA family
JVX96_02130	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JVX96_02135	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JVX96_02140	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_02150	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JVX96_02155	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JVX96_02165	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JVX96_02170	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
JVX96_02190	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JVX96_02205	COG4555	ABC transporter
JVX96_02215	COG2814	Major facilitator Superfamily
JVX96_02235	COG2423	ornithine cyclodeaminase activity
JVX96_02245	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_02255	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JVX96_02270	COG0477	Major facilitator Superfamily
JVX96_02290	COG1280	lysine exporter protein (LysE YggA)
JVX96_02305	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_02320	COG1414	Transcriptional regulator
JVX96_02325	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX96_02335	COG0625	glutathione transferase activity
JVX96_02360	COG1024	Enoyl-CoA hydratase
JVX96_02370	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JVX96_02375	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_02380	COG1960	acyl-CoA dehydrogenase activity
JVX96_02395	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JVX96_02400	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JVX96_02405	COG3012	SEC-C Motif Domain Protein
JVX96_02420	COG1408	metallophosphoesterase
JVX96_02425	COG1960	acyl-CoA dehydrogenase activity
JVX96_02435	COG0183	Belongs to the thiolase family
JVX96_02440	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
JVX96_02445	COG0288	reversible hydration of carbon dioxide
JVX96_02450	COG0789	Transcriptional regulator
JVX96_02485	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JVX96_02500	COG0751	glycine-tRNA ligase activity
JVX96_02505	COG0752	glycyl-tRNA synthetase alpha subunit
JVX96_02510	COG1597	lipid kinase activity
JVX96_02520	COG0671	phosphoesterase, PA-phosphatase related
JVX96_02585	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_02595	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JVX96_02600	COG4535	Mg2 and Co2 transporter CorC
JVX96_02610	COG1522	sequence-specific DNA binding
JVX96_02625	COG3186	Phenylalanine-4-hydroxylase
JVX96_02630	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_02665	COG0488	(ABC) transporter
JVX96_02670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_02710	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_02750	COG1462	curli production assembly transport component CsgG
JVX96_02760	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX96_02780	COG0439	Biotin carboxylase
JVX96_02785	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_02800	COG2124	cytochrome p450
JVX96_02800	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JVX96_02840	COG1505	serine-type exopeptidase activity
JVX96_02845	COG0010	Belongs to the arginase family
JVX96_02860	COG0714	Associated with various cellular activities
JVX96_02920	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JVX96_02955	COG0789	Transcriptional regulator
JVX96_02960	COG2084	Dehydrogenase
JVX96_02970	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JVX96_02975	COG0792	nuclease activity
JVX96_02980	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JVX96_03030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_03035	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_03065	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_03070	COG1335	isochorismatase
JVX96_03075	COG0251	oxidation-reduction process
JVX96_03080	COG2267	carboxylic ester hydrolase activity
JVX96_03085	COG0778	Nitroreductase
JVX96_03090	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JVX96_03095	COG1309	transcriptional regulator
JVX96_03115	COG3845	ABC transporter
JVX96_03125	COG1079	Belongs to the binding-protein-dependent transport system permease family
JVX96_03140	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JVX96_03145	COG3842	ATPase activity
JVX96_03150	COG1176	ABC-type spermidine putrescine transport system, permease component I
JVX96_03155	COG1177	transmembrane transport
JVX96_03185	COG3118	belongs to the thioredoxin family
JVX96_03190	COG1201	RNA secondary structure unwinding
JVX96_03195	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JVX96_03195	COG1793	dna ligase
JVX96_03200	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JVX96_03200	COG1793	dna ligase
JVX96_03215	COG0673	inositol 2-dehydrogenase activity
JVX96_03220	COG1879	ABC-type sugar transport system periplasmic component
JVX96_03225	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_03240	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JVX96_03245	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JVX96_03255	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JVX96_03260	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JVX96_03265	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JVX96_03270	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JVX96_03280	COG0356	it plays a direct role in the translocation of protons across the membrane
JVX96_03295	COG2921	Belongs to the UPF0250 family
JVX96_03305	COG0321	lipoyl(octanoyl) transferase activity
JVX96_03310	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JVX96_03365	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JVX96_03380	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_03405	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JVX96_03430	COG2130	NADP-dependent
JVX96_03440	COG0745	RESPONSE REGULATOR receiver
JVX96_03470	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JVX96_03475	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX96_03490	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX96_03495	COG3909	cytochrome
JVX96_03510	COG0678	peroxiredoxin activity
JVX96_03515	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JVX96_03520	COG0255	Belongs to the universal ribosomal protein uL29 family
JVX96_03525	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JVX96_03530	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JVX96_03535	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JVX96_03540	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JVX96_03545	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JVX96_03550	COG0089	rRNA binding
JVX96_03555	COG0088	Forms part of the polypeptide exit tunnel
JVX96_03560	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JVX96_03575	COG0051	transcription antitermination factor activity, RNA binding
JVX96_03585	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JVX96_03590	COG0049	tRNA binding
JVX96_03595	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JVX96_03600	COG1686	Belongs to the peptidase S11 family
JVX96_03605	COG2945	thiolester hydrolase activity
JVX96_03620	COG1981	membrane
JVX96_03630	COG0598	Magnesium transport protein CorA
JVX96_03645	COG0583	DNA-binding transcription factor activity
JVX96_03650	COG0412	Dienelactone hydrolase
JVX96_03660	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_03665	COG2095	MarC family integral membrane protein
JVX96_03700	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_03710	COG0657	acetylesterase activity
JVX96_03715	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JVX96_03720	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_03735	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
JVX96_03760	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JVX96_03800	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX96_03810	COG4208	sulfate ABC transporter
JVX96_03815	COG3842	ATPase activity
JVX96_03835	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JVX96_03845	COG0640	Transcriptional regulator
JVX96_03860	COG0625	glutathione transferase activity
JVX96_03885	COG1131	(ABC) transporter
JVX96_03900	COG1846	Transcriptional regulator
JVX96_03905	COG1764	response to oxidative stress
JVX96_03920	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JVX96_03930	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JVX96_03935	COG0583	DNA-binding transcription factor activity
JVX96_03940	COG1960	acyl-CoA dehydrogenase activity
JVX96_03945	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_03950	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_03990	COG3552	Protein containing von Willebrand factor type A (VWA) domain
JVX96_03995	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JVX96_04005	COG0326	Molecular chaperone. Has ATPase activity
JVX96_04010	COG0714	Associated with various cellular activities
JVX96_04030	COG0326	Molecular chaperone. Has ATPase activity
JVX96_04040	COG1840	ABC-type Fe3 transport system, periplasmic component
JVX96_04045	COG0583	DNA-binding transcription factor activity
JVX96_04075	COG1187	pseudouridine synthase activity
JVX96_04080	COG1056	cytidyltransferase-related domain
JVX96_04080	COG1051	belongs to the nudix hydrolase family
JVX96_04090	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JVX96_04110	COG0745	RESPONSE REGULATOR receiver
JVX96_04115	COG2205	protein histidine kinase activity
JVX96_04125	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
JVX96_04130	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
JVX96_04135	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
JVX96_04150	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_04165	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JVX96_04185	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_04195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_04200	COG1022	Amp-dependent synthetase and ligase
JVX96_04230	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_04240	COG0372	Belongs to the citrate synthase family
JVX96_04245	COG0372	Belongs to the citrate synthase family
JVX96_04250	COG0693	protein deglycase activity
JVX96_04280	COG1940	carbohydrate kinase activity
JVX96_04285	COG1129	ABC transporter
JVX96_04290	COG4214	carbohydrate transport
JVX96_04295	COG4213	ABC transporter substrate-binding protein
JVX96_04315	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_04320	COG2197	response regulator
JVX96_04325	COG0024	Methionine aminopeptidase
JVX96_04335	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JVX96_04340	COG0022	dehydrogenase e1 component
JVX96_04350	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_04355	COG0583	DNA-binding transcription factor activity
JVX96_04370	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JVX96_04385	COG1024	Enoyl-CoA hydratase
JVX96_04390	COG1960	acyl-CoA dehydrogenase activity
JVX96_04410	COG0203	ribosomal protein L17
JVX96_04415	COG0202	RNA polymerase activity
JVX96_04420	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JVX96_04425	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JVX96_04430	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JVX96_04435	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JVX96_04440	COG0201	protein transport
JVX96_04445	COG0200	Binds to the 23S rRNA
JVX96_04450	COG1841	ribosomal large subunit assembly
JVX96_04455	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JVX96_04460	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JVX96_04465	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JVX96_04470	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JVX96_04475	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JVX96_04480	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JVX96_04485	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JVX96_04490	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JVX96_04510	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JVX96_04515	COG0783	Belongs to the Dps family
JVX96_04525	COG4770	biotin carboxylase activity
JVX96_04530	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_04535	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_04540	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JVX96_04560	COG1280	lysine exporter protein (LysE YggA)
JVX96_04565	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JVX96_04570	COG1090	epimerase
JVX96_04580	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JVX96_04585	COG0343	queuine tRNA-ribosyltransferase activity
JVX96_04640	COG0284	orotidine-5'-phosphate decarboxylase activity
JVX96_04655	COG1214	PFAM Peptidase M22, glycoprotease
JVX96_04660	COG1349	DNA-binding transcription factor activity
JVX96_04665	COG0494	nUDIX hydrolase
JVX96_04670	COG2027	D-alanyl-D-alanine carboxypeptidase
JVX96_04680	COG0009	L-threonylcarbamoyladenylate synthase
JVX96_04685	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JVX96_04690	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JVX96_04705	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JVX96_04720	COG1522	sequence-specific DNA binding
JVX96_04725	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JVX96_04730	COG0469	pyruvate kinase activity
JVX96_04735	COG0126	phosphoglycerate kinase activity
JVX96_04740	COG0583	DNA-binding transcription factor activity
JVX96_04755	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_04785	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JVX96_04795	COG0242	peptide deformylase activity
JVX96_04805	COG0758	DNA mediated transformation
JVX96_04810	COG2922	Belongs to the Smg family
JVX96_04820	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JVX96_04825	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JVX96_04830	COG1862	Preprotein translocase
JVX96_04840	COG1522	sequence-specific DNA binding
JVX96_04855	COG0765	amino acid transport
JVX96_04860	COG2814	Major facilitator Superfamily
JVX96_04875	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_04905	COG0251	oxidation-reduction process
JVX96_04915	COG3622	Belongs to the hyi family
JVX96_04920	COG0235	Class ii aldolase
JVX96_04925	COG3395	kinase activity
JVX96_04930	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_04935	COG2084	Dehydrogenase
JVX96_04940	COG2186	Transcriptional regulator
JVX96_04950	COG1522	sequence-specific DNA binding
JVX96_04980	COG4566	intracellular signal transduction
JVX96_05000	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JVX96_05010	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JVX96_05015	COG1595	DNA-templated transcription, initiation
JVX96_05040	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JVX96_05055	COG0625	glutathione transferase activity
JVX96_05080	COG0861	Integral membrane protein TerC family
JVX96_05090	COG1950	PFAM Membrane protein of
JVX96_05095	COG4783	chaperone-mediated protein folding
JVX96_05100	COG0315	cyclic pyranopterin monophosphate synthase activity
JVX96_05105	COG2165	general secretion pathway protein
JVX96_05120	COG4966	pilus assembly protein PilW
JVX96_05165	COG2194	sulfuric ester hydrolase activity
JVX96_05175	COG1484	DNA-dependent DNA replication
JVX96_05200	COG1716	ATPase activity
JVX96_05210	COG0861	Integral membrane protein TerC family
JVX96_05215	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JVX96_05220	COG0045	succinate-CoA ligase (ADP-forming) activity
JVX96_05225	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JVX96_05235	COG1414	Transcriptional regulator
JVX96_05240	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_05255	COG2721	sulfolactate sulfo-lyase activity
JVX96_05260	COG0765	amino acid transport
JVX96_05270	COG1126	abc transporter atp-binding protein
JVX96_05290	COG2137	regulation of response to DNA damage stimulus
JVX96_05295	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JVX96_05310	COG0642	Histidine kinase
JVX96_05320	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JVX96_05320	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JVX96_05345	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_05360	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JVX96_05380	COG2814	Major facilitator Superfamily
JVX96_05390	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JVX96_05395	COG0513	Belongs to the DEAD box helicase family
JVX96_05420	COG0697	spore germination
JVX96_05425	COG1942	4-Oxalocrotonate Tautomerase
JVX96_05430	COG1802	Transcriptional regulator
JVX96_05460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_05475	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX96_05485	COG3550	peptidyl-serine autophosphorylation
JVX96_05500	COG1473	amidohydrolase
JVX96_05505	COG1741	Belongs to the pirin family
JVX96_05515	COG0583	DNA-binding transcription factor activity
JVX96_05520	COG1047	Peptidyl-prolyl cis-trans
JVX96_05550	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_05560	COG0583	DNA-binding transcription factor activity
JVX96_05565	COG1914	H( )-stimulated, divalent metal cation uptake system
JVX96_05570	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JVX96_05575	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JVX96_05580	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JVX96_05585	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JVX96_05590	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JVX96_05595	COG0006	proline dipeptidase activity
JVX96_05620	COG4953	penicillin-binding protein 1C
JVX96_05625	COG2373	Large extracellular alpha-helical protein
JVX96_05650	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JVX96_05670	COG0280	phosphate acetyltransferase
JVX96_05670	COG0281	malic enzyme
JVX96_05690	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JVX96_05695	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX96_05700	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JVX96_05710	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JVX96_05725	COG3831	ATPase activity
JVX96_05730	COG2267	carboxylic ester hydrolase activity
JVX96_05750	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_05755	COG1739	Uncharacterized protein family UPF0029
JVX96_05760	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JVX96_05760	COG2813	Specifically methylates the guanine in position
JVX96_05770	COG2119	membrane
JVX96_05775	COG0724	RNA recognition motif
JVX96_05780	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_05790	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JVX96_05810	COG2066	Belongs to the glutaminase family
JVX96_05810	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JVX96_05815	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JVX96_05820	COG0706	membrane insertase activity
JVX96_05825	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JVX96_05830	COG0594	ribonuclease P activity
JVX96_05835	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JVX96_05840	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JVX96_05845	COG0592	DNA-directed DNA polymerase activity
JVX96_05875	COG1408	metallophosphoesterase
JVX96_05885	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JVX96_05890	COG0392	lysyltransferase activity
JVX96_05895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_05900	COG3568	Endonuclease Exonuclease Phosphatase
JVX96_05925	COG0456	acetyltransferase
JVX96_05925	COG0454	-acetyltransferase
JVX96_05930	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX96_05950	COG4452	Inner membrane protein CreD
JVX96_05955	COG1472	Belongs to the glycosyl hydrolase 3 family
JVX96_05970	COG2205	protein histidine kinase activity
JVX96_05975	COG0745	RESPONSE REGULATOR receiver
JVX96_05990	COG2608	mercury ion transmembrane transporter activity
JVX96_05995	COG2217	Heavy metal translocating P-type atpase
JVX96_06000	COG0456	acetyltransferase
JVX96_06015	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX96_06025	COG0745	RESPONSE REGULATOR receiver
JVX96_06030	COG0642	Histidine kinase
JVX96_06035	COG0346	lactoylglutathione lyase activity
JVX96_06050	COG1902	pentaerythritol trinitrate reductase activity
JVX96_06060	COG1024	Enoyl-CoA hydratase
JVX96_06085	COG0445	tRNA wobble uridine modification
JVX96_06090	COG0357	Ribosomal RNA small subunit methyltransferase G
JVX96_06100	COG1192	Involved in chromosome partitioning
JVX96_06110	COG1475	DNA binding
JVX96_06120	COG0277	FAD linked oxidase domain protein
JVX96_06125	COG2096	Adenosyltransferase
JVX96_06185	COG0583	DNA-binding transcription factor activity
JVX96_06210	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JVX96_06215	COG2894	cell division
JVX96_06220	COG0850	regulation of cytokinetic process
JVX96_06225	COG2233	PERMEase
JVX96_06230	COG2050	protein possibly involved in aromatic compounds catabolism
JVX96_06250	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX96_06255	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_06265	COG3246	L-lysine catabolic process to acetate
JVX96_06295	COG3284	Transcriptional regulator
JVX96_06345	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JVX96_06405	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
JVX96_06410	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_06415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_06420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_06420	COG1116	anion transmembrane transporter activity
JVX96_06435	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX96_06445	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
JVX96_06465	COG0583	DNA-binding transcription factor activity
JVX96_06470	COG1960	acyl-CoA dehydrogenase activity
JVX96_06475	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_06495	COG1473	amidohydrolase
JVX96_06500	COG1760	l-serine dehydratase
JVX96_06510	COG1573	uracil-dna glycosylase
JVX96_06535	COG3246	L-lysine catabolic process to acetate
JVX96_06540	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_06545	COG3485	protocatechuate 3,4-dioxygenase
JVX96_06550	COG1609	Transcriptional regulator
JVX96_06570	COG0583	DNA-binding transcription factor activity
JVX96_06595	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JVX96_06610	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_06620	COG0683	leucine binding
JVX96_06640	COG2066	Belongs to the glutaminase family
JVX96_06650	COG0583	DNA-binding transcription factor activity
JVX96_06670	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_06680	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JVX96_06690	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JVX96_06695	COG0700	Nucleoside recognition
JVX96_06700	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_06710	COG0410	ABC transporter
JVX96_06730	COG0683	leucine binding
JVX96_06735	COG0633	Ferredoxin
JVX96_06810	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
JVX96_06820	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JVX96_06825	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX96_06850	COG0583	DNA-binding transcription factor activity
JVX96_06865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_06870	COG1116	anion transmembrane transporter activity
JVX96_06880	COG2986	histidine ammonia-lyase
JVX96_06885	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JVX96_06895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_06900	COG0765	amino acid transport
JVX96_06910	COG1228	amidohydrolase
JVX96_06915	COG0402	S-adenosylhomocysteine deaminase activity
JVX96_06935	COG0583	DNA-binding transcription factor activity
JVX96_06945	COG5380	lipid catabolic process
JVX96_06950	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JVX96_06955	COG0646	methionine synthase
JVX96_06955	COG1410	methionine synthase
JVX96_06980	COG1309	transcriptional regulator
JVX96_07010	COG0683	leucine binding
JVX96_07020	COG0411	ABC transporter
JVX96_07030	COG1335	isochorismatase
JVX96_07040	COG2080	2 iron, 2 sulfur cluster binding
JVX96_07045	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JVX96_07045	COG2010	Cytochrome c
JVX96_07175	COG0606	chelatase, subunit chli
JVX96_07185	COG0347	Belongs to the P(II) protein family
JVX96_07190	COG0004	ammonium transporteR
JVX96_07200	COG0583	DNA-binding transcription factor activity
JVX96_07205	COG0277	FAD linked oxidase domain protein
JVX96_07210	COG0277	FAD linked oxidase domain protein
JVX96_07215	COG0247	lactate metabolic process
JVX96_07225	COG0386	Belongs to the glutathione peroxidase family
JVX96_07235	COG0477	Major facilitator Superfamily
JVX96_07240	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JVX96_07260	COG0789	Transcriptional regulator
JVX96_07265	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX96_07280	COG0129	dihydroxy-acid dehydratase activity
JVX96_07295	COG3971	2-oxopent-4-enoate hydratase activity
JVX96_07320	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_07335	COG1846	Transcriptional regulator
JVX96_07355	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JVX96_07370	COG0583	DNA-binding transcription factor activity
JVX96_07380	COG1473	amidohydrolase
JVX96_07385	COG2974	May be involved in recombination
JVX96_07410	COG2205	protein histidine kinase activity
JVX96_07415	COG0745	RESPONSE REGULATOR receiver
JVX96_07420	COG0579	oxidoreductase
JVX96_07435	COG2223	nitrite transmembrane transporter activity
JVX96_07440	COG0501	Belongs to the peptidase M48B family
JVX96_07450	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_07455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_07490	COG1079	Belongs to the binding-protein-dependent transport system permease family
JVX96_07495	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JVX96_07500	COG1335	isochorismatase
JVX96_07505	COG3845	ABC transporter
JVX96_07530	COG0583	DNA-binding transcription factor activity
JVX96_07535	COG0708	Exodeoxyribonuclease III
JVX96_07540	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JVX96_07550	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JVX96_07555	COG0154	amidase activity
JVX96_07560	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JVX96_07565	COG1077	Cell shape determining protein MreB Mrl
JVX96_07570	COG1792	Involved in formation and maintenance of cell shape
JVX96_07580	COG0768	penicillin binding
JVX96_07585	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX96_07595	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JVX96_07605	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_07620	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JVX96_07640	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JVX96_07645	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JVX96_07680	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_07695	COG1177	transmembrane transport
JVX96_07700	COG1176	ABC-type spermidine putrescine transport system, permease component I
JVX96_07705	COG3842	ATPase activity
JVX96_07735	COG0436	Aminotransferase
JVX96_07745	COG0004	ammonium transporteR
JVX96_07765	COG0724	RNA recognition motif
JVX96_07775	COG0023	Translation Initiation Factor
JVX96_07780	COG0513	Belongs to the DEAD box helicase family
JVX96_07785	COG1960	acyl-CoA dehydrogenase activity
JVX96_07790	COG1960	acyl-CoA dehydrogenase activity
JVX96_07805	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JVX96_07820	COG2733	membrane
JVX96_07835	COG1473	amidohydrolase
JVX96_07850	COG0243	molybdopterin cofactor binding
JVX96_07865	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_07895	COG0583	DNA-binding transcription factor activity
JVX96_07910	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_07920	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_07925	COG0445	tRNA wobble uridine modification
JVX96_07935	COG1946	Acyl-CoA thioesterase
JVX96_07945	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_07955	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_07960	COG4177	L-phenylalanine transmembrane transporter activity
JVX96_07975	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_07980	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_07985	COG1053	succinate dehydrogenase
JVX96_07995	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_08000	COG0659	secondary active sulfate transmembrane transporter activity
JVX96_08005	COG1129	ABC transporter
JVX96_08045	COG0667	Aldo Keto reductase
JVX96_08050	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_08055	COG1129	ABC transporter
JVX96_08065	COG1070	Carbohydrate kinase
JVX96_08070	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JVX96_08075	COG2188	Transcriptional regulator
JVX96_08085	COG0038	chloride channel
JVX96_08090	COG0629	single-stranded DNA binding
JVX96_08095	COG0217	transcriptional regulatory protein
JVX96_08105	COG0583	DNA-binding transcription factor activity
JVX96_08110	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX96_08130	COG1122	ATPase activity
JVX96_08140	COG1268	BioY protein
JVX96_08185	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_08190	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_08195	COG0482	sulfurtransferase activity
JVX96_08230	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_08235	COG0601	transmembrane transport
JVX96_08240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_08245	COG0444	Belongs to the ABC transporter superfamily
JVX96_08250	COG4608	Belongs to the ABC transporter superfamily
JVX96_08255	COG0747	negative chemotaxis
JVX96_08260	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JVX96_08265	COG0598	Magnesium transport protein CorA
JVX96_08275	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JVX96_08285	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JVX96_08290	COG0735	belongs to the Fur family
JVX96_08295	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JVX96_08300	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JVX96_08320	COG0058	SHG alpha-glucan phosphorylase activity
JVX96_08325	COG0297	glycogen (starch) synthase activity
JVX96_08330	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JVX96_08335	COG1523	belongs to the glycosyl hydrolase 13 family
JVX96_08340	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JVX96_08345	COG0366	Alpha amylase catalytic
JVX96_08360	COG0495	leucyl-tRNA aminoacylation
JVX96_08375	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JVX96_08385	COG3158	transport of potassium into the cell
JVX96_08400	COG0189	ligase activity
JVX96_08410	COG0121	glutamine amidotransferase
JVX96_08420	COG2814	Major facilitator Superfamily
JVX96_08435	COG0205	6-phosphofructokinase activity
JVX96_08440	COG1024	Enoyl-CoA hydratase
JVX96_08445	COG0183	Belongs to the thiolase family
JVX96_08455	COG0583	DNA-binding transcription factor activity
JVX96_08460	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
JVX96_08480	COG4804	nuclease activity
JVX96_08485	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JVX96_08490	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX96_08495	COG1414	Transcriptional regulator
JVX96_08500	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX96_08505	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_08530	COG0018	arginyl-trna synthetase
JVX96_08545	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JVX96_08550	COG1137	ATPase activity
JVX96_08555	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JVX96_08560	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_08585	COG3038	cytochrome b561
JVX96_08590	COG5002	protein histidine kinase activity
JVX96_08630	COG0069	glutamate synthase activity
JVX96_08635	COG3318	Belongs to the UPF0149 family
JVX96_08635	COG3012	SEC-C Motif Domain Protein
JVX96_08675	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
JVX96_08690	COG2967	ApaG domain
JVX96_08695	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JVX96_08765	COG5002	protein histidine kinase activity
JVX96_08780	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JVX96_08785	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JVX96_08810	COG0515	serine threonine protein kinase
JVX96_08985	COG2072	flavoprotein involved in K transport
JVX96_08995	COG2144	transferase activity, transferring acyl groups
JVX96_09020	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_09025	COG1959	2 iron, 2 sulfur cluster binding
JVX96_09030	COG3781	membrane
JVX96_09040	COG0546	phosphoglycolate phosphatase activity
JVX96_09075	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JVX96_09080	COG0134	indole-3-glycerol-phosphate synthase activity
JVX96_09085	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JVX96_09125	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JVX96_09130	COG0081	regulation of translation
JVX96_09135	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JVX96_09140	COG0222	ribosome binding
JVX96_09145	COG0085	RNA polymerase activity
JVX96_09150	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JVX96_09170	COG5000	phosphorelay sensor kinase activity
JVX96_09175	COG2204	response regulator
JVX96_09190	COG0392	lysyltransferase activity
JVX96_09195	COG2050	protein possibly involved in aromatic compounds catabolism
JVX96_09200	COG2205	protein histidine kinase activity
JVX96_09200	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_09225	COG0390	transport system, permease component
JVX96_09230	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JVX96_09235	COG4774	siderophore transport
JVX96_09250	COG1360	Flagellar Motor Protein
JVX96_09265	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JVX96_09280	COG0210	DNA helicase
JVX96_09285	COG0679	Auxin Efflux Carrier
JVX96_09305	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JVX96_09310	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JVX96_09320	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JVX96_09325	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX96_09330	COG4232	protein-disulfide reductase activity
JVX96_09335	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JVX96_09355	COG0583	DNA-binding transcription factor activity
JVX96_09360	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_09370	COG1215	transferase activity, transferring glycosyl groups
JVX96_09375	COG0726	polysaccharide deacetylase
JVX96_09375	COG1649	PFAM Uncharacterised BCR, COG1649
JVX96_09390	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JVX96_09405	COG0384	phenazine biosynthesis protein PhzF
JVX96_09410	COG0625	glutathione transferase activity
JVX96_09415	COG0384	phenazine biosynthesis protein PhzF
JVX96_09425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_09430	COG0697	spore germination
JVX96_09440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_09460	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_09480	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_09505	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JVX96_09525	COG3959	Transketolase, thiamine diphosphate binding domain
JVX96_09530	COG3958	Transketolase
JVX96_09540	COG0463	Glycosyl transferase, family 2
JVX96_09550	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JVX96_09555	COG1216	Glycosyl transferase, family 2
JVX96_09570	COG0463	Glycosyl transferase, family 2
JVX96_09575	COG0297	glycogen (starch) synthase activity
JVX96_09600	COG0438	transferase activity, transferring glycosyl groups
JVX96_09600	COG1216	Glycosyl transferase, family 2
JVX96_09605	COG1215	transferase activity, transferring glycosyl groups
JVX96_09620	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JVX96_09625	COG1309	transcriptional regulator
JVX96_09630	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JVX96_09640	COG2721	sulfolactate sulfo-lyase activity
JVX96_09650	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_09655	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX96_09660	COG0583	DNA-binding transcription factor activity
JVX96_09665	COG4221	oxidoreductase activity
JVX96_09690	COG1960	acyl-CoA dehydrogenase activity
JVX96_09700	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_09700	COG1024	Enoyl-CoA hydratase
JVX96_09705	COG2852	Protein conserved in bacteria
JVX96_09710	COG0183	Belongs to the thiolase family
JVX96_09730	COG1024	Enoyl-CoA hydratase
JVX96_09735	COG0683	leucine binding
JVX96_09745	COG5265	(ABC) transporter
JVX96_09750	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX96_09755	COG0154	amidase activity
JVX96_09760	COG0583	DNA-binding transcription factor activity
JVX96_09765	COG1027	Aspartate ammonia-lyase
JVX96_09770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_09775	COG0765	amino acid transport
JVX96_09780	COG0765	amino acid transport
JVX96_09785	COG1126	abc transporter atp-binding protein
JVX96_09795	COG3976	FMN-binding domain protein
JVX96_09795	COG0431	NADPH-dependent FMN reductase
JVX96_09795	COG1053	succinate dehydrogenase
JVX96_09830	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_09835	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JVX96_09835	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JVX96_09840	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JVX96_09880	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_09885	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_09890	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_09895	COG1024	Enoyl-CoA hydratase
JVX96_09900	COG1960	acyl-CoA dehydrogenase activity
JVX96_09905	COG1960	acyl-CoA dehydrogenase activity
JVX96_09910	COG0183	Belongs to the thiolase family
JVX96_09915	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_09915	COG1024	Enoyl-CoA hydratase
JVX96_09920	COG0583	DNA-binding transcription factor activity
JVX96_09930	COG1881	PFAM PEBP family protein
JVX96_09945	COG1573	uracil-dna glycosylase
JVX96_09955	COG0418	dihydroorotase activity
JVX96_09970	COG0501	Belongs to the peptidase M48B family
JVX96_09980	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JVX96_09990	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
JVX96_10020	COG1566	PFAM secretion protein HlyD family protein
JVX96_10030	COG2814	Major facilitator Superfamily
JVX96_10040	COG1187	pseudouridine synthase activity
JVX96_10075	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JVX96_10090	COG0590	tRNA wobble adenosine to inosine editing
JVX96_10110	COG2814	Major facilitator Superfamily
JVX96_10165	COG2366	antibiotic biosynthetic process
JVX96_10175	COG1595	DNA-templated transcription, initiation
JVX96_10190	COG0583	DNA-binding transcription factor activity
JVX96_10195	COG1335	isochorismatase
JVX96_10205	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JVX96_10220	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JVX96_10235	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JVX96_10240	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JVX96_10245	COG0523	cobalamin synthesis protein
JVX96_10265	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JVX96_10270	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JVX96_10275	COG2001	Belongs to the MraZ family
JVX96_10280	COG0275	rRNA processing
JVX96_10295	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JVX96_10300	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JVX96_10305	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JVX96_10310	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JVX96_10315	COG0772	Belongs to the SEDS family
JVX96_10320	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JVX96_10325	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JVX96_10330	COG1181	Belongs to the D-alanine--D-alanine ligase family
JVX96_10335	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JVX96_10350	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JVX96_10360	COG0583	DNA-binding transcription factor activity
JVX96_10365	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JVX96_10370	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JVX96_10375	COG0575	Belongs to the CDS family
JVX96_10395	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JVX96_10410	COG3150	esterase
JVX96_10415	COG2197	response regulator
JVX96_10425	COG0772	Belongs to the SEDS family
JVX96_10430	COG0312	modulator of DNA gyrase
JVX96_10440	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JVX96_10450	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JVX96_10460	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX96_10465	COG0511	ligase activity, forming carbon-carbon bonds
JVX96_10470	COG0439	Biotin carboxylase
JVX96_10475	COG2264	protein methyltransferase activity
JVX96_10485	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JVX96_10495	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JVX96_10530	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JVX96_10545	COG4993	Dehydrogenase
JVX96_10550	COG2943	transferase activity, transferring hexosyl groups
JVX96_10560	COG2204	response regulator
JVX96_10570	COG2205	protein histidine kinase activity
JVX96_10575	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JVX96_10585	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_10590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_10605	COG0037	tRNA processing
JVX96_10615	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_10630	COG2175	clavaminate synthase activity
JVX96_10640	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JVX96_10645	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_10675	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
JVX96_10680	COG3387	PFAM Glycoside hydrolase 15-related
JVX96_10690	COG0617	tRNA 3'-terminal CCA addition
JVX96_10695	COG3047	cAMP biosynthetic process
JVX96_10700	COG0625	glutathione transferase activity
JVX96_10705	COG1285	pathogenesis
JVX96_10710	COG0741	lytic transglycosylase activity
JVX96_10715	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JVX96_10720	COG0583	DNA-binding transcription factor activity
JVX96_10735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_10740	COG0583	DNA-binding transcription factor activity
JVX96_10755	COG2030	dehydratase
JVX96_10765	COG1024	Enoyl-CoA hydratase
JVX96_10770	COG0183	Belongs to the thiolase family
JVX96_10775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_10785	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JVX96_10805	COG2832	Protein of unknown function (DUF454)
JVX96_10815	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JVX96_10815	COG0506	proline dehydrogenase activity
JVX96_10815	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JVX96_10835	COG1902	pentaerythritol trinitrate reductase activity
JVX96_10855	COG1228	amidohydrolase
JVX96_10860	COG2267	carboxylic ester hydrolase activity
JVX96_10865	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX96_10895	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JVX96_10910	COG3386	PFAM SMP-30 Gluconolaconase
JVX96_10915	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_10925	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_10930	COG1879	ABC-type sugar transport system periplasmic component
JVX96_10935	COG4213	ABC transporter substrate-binding protein
JVX96_10945	COG4214	carbohydrate transport
JVX96_10950	COG1129	ABC transporter
JVX96_10955	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_10960	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_10990	COG0189	ligase activity
JVX96_10990	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JVX96_10995	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JVX96_10995	COG0189	ligase activity
JVX96_11000	COG1132	(ABC) transporter
JVX96_11020	COG1785	Belongs to the alkaline phosphatase family
JVX96_11030	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JVX96_11035	COG4178	(ABC) transporter
JVX96_11045	COG1840	ABC-type Fe3 transport system, periplasmic component
JVX96_11050	COG3842	ATPase activity
JVX96_11065	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JVX96_11070	COG2271	Major facilitator Superfamily
JVX96_11080	COG2863	cytochrome
JVX96_11160	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JVX96_11175	COG1765	OsmC-like protein
JVX96_11180	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
JVX96_11195	COG1473	amidohydrolase
JVX96_11205	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_11210	COG0444	Belongs to the ABC transporter superfamily
JVX96_11215	COG4608	Belongs to the ABC transporter superfamily
JVX96_11220	COG3384	dioxygenase
JVX96_11225	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JVX96_11230	COG1840	ABC-type Fe3 transport system, periplasmic component
JVX96_11240	COG3842	ATPase activity
JVX96_11255	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JVX96_11260	COG0166	Belongs to the GPI family
JVX96_11295	COG0395	ABC-type sugar transport system, permease component
JVX96_11300	COG3842	ATPase activity
JVX96_11305	COG0246	Mannitol dehydrogenase
JVX96_11315	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JVX96_11325	COG4753	response regulator
JVX96_11325	COG2207	Transcriptional regulator
JVX96_11330	COG1070	Carbohydrate kinase
JVX96_11350	COG0459	protein refolding
JVX96_11355	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JVX96_11360	COG1595	DNA-templated transcription, initiation
JVX96_11370	COG4774	siderophore transport
JVX96_11390	COG0642	Histidine kinase
JVX96_11400	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_11420	COG4772	TonB-dependent receptor
JVX96_11425	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_11450	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JVX96_11460	COG1560	Kdo2-lipid A biosynthetic process
JVX96_11465	COG2267	carboxylic ester hydrolase activity
JVX96_11470	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JVX96_11480	COG1333	cytochrome c biogenesis protein
JVX96_11485	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JVX96_11490	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JVX96_11495	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
JVX96_11500	COG0019	diaminopimelate decarboxylase activity
JVX96_11510	COG1965	Belongs to the frataxin family
JVX96_11545	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JVX96_11550	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JVX96_11555	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JVX96_11585	COG0070	glutamate synthase
JVX96_11585	COG0067	glutamate synthase
JVX96_11585	COG0069	glutamate synthase activity
JVX96_11595	COG1127	ABC transporter
JVX96_11600	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JVX96_11605	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JVX96_11610	COG2853	Lipoprotein
JVX96_11625	COG1131	(ABC) transporter
JVX96_11630	COG0842	Transport permease protein
JVX96_11635	COG5007	Belongs to the BolA IbaG family
JVX96_11640	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JVX96_11645	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JVX96_11665	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX96_11670	COG0131	Imidazoleglycerol-phosphate dehydratase
JVX96_11675	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JVX96_11680	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JVX96_11695	COG1301	dicarboxylic acid transport
JVX96_11705	COG0107	imidazoleglycerol-phosphate synthase activity
JVX96_11710	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JVX96_11715	COG0140	phosphoribosyl-ATP diphosphatase activity
JVX96_11725	COG0537	adenosine 5'-monophosphoramidase activity
JVX96_11730	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JVX96_11735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JVX96_11740	COG0805	protein transport
JVX96_11755	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JVX96_11760	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JVX96_11765	COG1970	mechanosensitive ion channel activity
JVX96_11785	COG0723	plastoquinol--plastocyanin reductase activity
JVX96_11790	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JVX96_11795	COG2857	Cytochrome c1
JVX96_11800	COG0625	glutathione transferase activity
JVX96_11805	COG2969	positive regulation of protein catabolic process
JVX96_11830	COG4591	ABC-type transport system involved in lipoprotein release permease component
JVX96_11835	COG1136	(ABC) transporter
JVX96_11845	COG1595	DNA-templated transcription, initiation
JVX96_11850	COG0740	serine-type endopeptidase activity
JVX96_11855	COG0251	oxidation-reduction process
JVX96_11870	COG0601	transmembrane transport
JVX96_11900	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JVX96_11915	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_11970	COG1253	flavin adenine dinucleotide binding
JVX96_11975	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JVX96_11995	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JVX96_12000	COG0463	Glycosyl transferase, family 2
JVX96_12005	COG0671	phosphoesterase, PA-phosphatase related
JVX96_12020	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_12025	COG2030	dehydratase
JVX96_12025	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_12035	COG1129	ABC transporter
JVX96_12050	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JVX96_12055	COG2151	metal-sulfur cluster biosynthetic enzyme
JVX96_12060	COG3396	Phenylacetate-CoA oxygenase
JVX96_12065	COG3460	Phenylacetate-CoA oxygenase
JVX96_12070	COG3396	Phenylacetate-CoA oxygenase
JVX96_12080	COG2050	protein possibly involved in aromatic compounds catabolism
JVX96_12085	COG1024	Enoyl-CoA hydratase
JVX96_12095	COG1309	transcriptional regulator
JVX96_12105	COG0583	DNA-binding transcription factor activity
JVX96_12120	COG2304	oxidoreductase activity
JVX96_12130	COG0714	Associated with various cellular activities
JVX96_12135	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_12140	COG0084	hydrolase, TatD family'
JVX96_12155	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JVX96_12160	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JVX96_12180	COG0583	DNA-binding transcription factor activity
JVX96_12200	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_12220	COG0583	DNA-binding transcription factor activity
JVX96_12230	COG1283	sodium-dependent phosphate transmembrane transporter activity
JVX96_12235	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JVX96_12260	COG1609	Transcriptional regulator
JVX96_12265	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JVX96_12275	COG0196	riboflavin kinase activity
JVX96_12300	COG1960	acyl-CoA dehydrogenase activity
JVX96_12305	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JVX96_12325	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JVX96_12325	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JVX96_12335	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JVX96_12340	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JVX96_12345	COG0492	ferredoxin-NADP+ reductase activity
JVX96_12355	COG1674	ftsk spoiiie
JVX96_12360	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JVX96_12365	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JVX96_12370	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_12400	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_12415	COG2816	NAD+ diphosphatase activity
JVX96_12420	COG0425	Belongs to the sulfur carrier protein TusA family
JVX96_12430	COG0525	valine-tRNA ligase activity
JVX96_12435	COG3022	response to hydroperoxide
JVX96_12445	COG2267	carboxylic ester hydrolase activity
JVX96_12450	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JVX96_12450	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JVX96_12455	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_12470	COG4948	Mandelate Racemase Muconate Lactonizing
JVX96_12475	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_12490	COG1960	acyl-CoA dehydrogenase activity
JVX96_12500	COG1960	acyl-CoA dehydrogenase activity
JVX96_12510	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_12540	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JVX96_12545	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
JVX96_12560	COG0583	DNA-binding transcription factor activity
JVX96_12565	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JVX96_12585	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JVX96_12600	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_12610	COG4948	Mandelate Racemase Muconate Lactonizing
JVX96_12615	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_12630	COG0477	Major facilitator Superfamily
JVX96_12635	COG1304	FMN binding
JVX96_12640	COG0583	DNA-binding transcription factor activity
JVX96_12655	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
JVX96_12660	COG4221	oxidoreductase activity
JVX96_12670	COG2267	carboxylic ester hydrolase activity
JVX96_12695	COG4778	phosphonate C-P lyase system protein PhnL
JVX96_12705	COG2807	transmembrane transport
JVX96_12710	COG2186	Transcriptional regulator
JVX96_12715	COG0583	DNA-binding transcription factor activity
JVX96_12720	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JVX96_12725	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX96_12735	COG1280	lysine exporter protein (LysE YggA)
JVX96_12800	COG0346	lactoylglutathione lyase activity
JVX96_12850	COG1538	Outer membrane efflux protein
JVX96_12860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_12875	COG0165	Argininosuccinate lyase
JVX96_12890	COG0628	permease
JVX96_12900	COG0583	DNA-binding transcription factor activity
JVX96_12920	COG3459	Glycosyltransferase 36 associated
JVX96_12930	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JVX96_12935	COG0181	hydroxymethylbilane synthase activity
JVX96_12955	COG1530	ribonuclease E activity
JVX96_12975	COG0616	signal peptide processing
JVX96_12975	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JVX96_12980	COG2223	nitrite transmembrane transporter activity
JVX96_12985	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JVX96_12990	COG0424	maF-like protein
JVX96_12995	COG1399	metal-binding, possibly nucleic acid-binding protein
JVX96_13000	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JVX96_13005	COG0416	fatty acid biosynthetic process
JVX96_13010	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JVX96_13015	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JVX96_13020	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_13025	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX96_13030	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JVX96_13055	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_13060	COG0481	GTPase activity
JVX96_13065	COG0681	Belongs to the peptidase S26 family
JVX96_13075	COG0571	ribonuclease III activity
JVX96_13080	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JVX96_13085	COG1381	Involved in DNA repair and RecF pathway recombination
JVX96_13090	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JVX96_13095	COG0736	holo-[acyl-carrier-protein] synthase activity
JVX96_13100	COG1472	Belongs to the glycosyl hydrolase 3 family
JVX96_13105	COG1451	nucleotide metabolic process
JVX96_13110	COG0443	Heat shock 70 kDa protein
JVX96_13115	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JVX96_13125	COG0762	integral membrane protein
JVX96_13130	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JVX96_13135	COG0159	tryptophan synthase activity
JVX96_13140	COG0133	tryptophan synthase activity
JVX96_13145	COG0135	phosphoribosylanthranilate isomerase activity
JVX96_13150	COG0101	tRNA pseudouridine synthase activity
JVX96_13160	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JVX96_13165	COG0473	3-isopropylmalate dehydrogenase activity
JVX96_13170	COG0066	3-isopropylmalate dehydratase activity
JVX96_13175	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JVX96_13185	COG0372	Belongs to the citrate synthase family
JVX96_13190	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JVX96_13195	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JVX96_13200	COG1053	succinate dehydrogenase
JVX96_13215	COG2188	Transcriptional regulator
JVX96_13220	COG0039	L-malate dehydrogenase activity
JVX96_13225	COG4106	trans-aconitate 2-methyltransferase activity
JVX96_13245	COG1960	acyl-CoA dehydrogenase activity
JVX96_13260	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JVX96_13270	COG0672	)-iron permease
JVX96_13285	COG2822	iron ion transport
JVX96_13305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_13315	COG3483	tryptophan 2,3-dioxygenase activity
JVX96_13325	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
JVX96_13340	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JVX96_13345	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JVX96_13355	COG0268	Binds directly to 16S ribosomal RNA
JVX96_13360	COG0728	peptidoglycan biosynthetic process
JVX96_13375	COG3795	YCII-related domain
JVX96_13380	COG4941	Belongs to the sigma-70 factor family
JVX96_13385	COG4977	sequence-specific DNA binding
JVX96_13385	COG1917	Cupin 2, conserved barrel domain protein
JVX96_13405	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JVX96_13410	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JVX96_13415	COG0617	tRNA 3'-terminal CCA addition
JVX96_13430	COG1392	Phosphate transport regulator
JVX96_13435	COG0306	phosphate transporter
JVX96_13450	COG0228	four-way junction DNA binding
JVX96_13455	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JVX96_13460	COG0336	Belongs to the RNA methyltransferase TrmD family
JVX96_13465	COG0335	large ribosomal subunit rRNA binding
JVX96_13475	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
JVX96_13480	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX96_13490	COG1162	GTPase activity
JVX96_13495	COG2154	pterin-4-alpha-carbinolamine dehydratase
JVX96_13500	COG0501	Belongs to the peptidase M48B family
JVX96_13505	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JVX96_13510	COG0513	Belongs to the DEAD box helicase family
JVX96_13520	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_13525	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JVX96_13530	COG0604	alcohol dehydrogenase
JVX96_13555	COG4638	Rieske (2fe-2S)
JVX96_13580	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
JVX96_13590	COG0683	leucine binding
JVX96_13640	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_13690	COG0745	RESPONSE REGULATOR receiver
JVX96_13705	COG0300	oxidoreductase activity
JVX96_13720	COG0516	GMP reductase activity
JVX96_13725	COG0210	DNA helicase
JVX96_13745	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JVX96_13770	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_13785	COG0412	Dienelactone hydrolase
JVX96_13800	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JVX96_13805	COG4608	Belongs to the ABC transporter superfamily
JVX96_13810	COG0444	Belongs to the ABC transporter superfamily
JVX96_13815	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_13820	COG0601	transmembrane transport
JVX96_13825	COG0747	negative chemotaxis
JVX96_13850	COG3064	Membrane
JVX96_13890	COG1722	exodeoxyribonuclease VII activity
JVX96_13895	COG0142	geranyltranstransferase activity
JVX96_13900	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JVX96_13910	COG0411	ABC transporter
JVX96_13930	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JVX96_13965	COG2188	Transcriptional regulator
JVX96_13975	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_13980	COG4177	L-phenylalanine transmembrane transporter activity
JVX96_13985	COG1137	ATPase activity
JVX96_14030	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JVX96_14045	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JVX96_14045	COG3608	succinylglutamate desuccinylase aspartoacylase
JVX96_14050	COG1320	monovalent cation:proton antiporter activity
JVX96_14055	COG2212	antiporter activity
JVX96_14065	COG0651	ATP synthesis coupled electron transport
JVX96_14070	COG1006	Multisubunit Na H antiporter MnhC subunit
JVX96_14075	COG2111	Na H antiporter
JVX96_14075	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JVX96_14080	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JVX96_14090	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JVX96_14110	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JVX96_14115	COG0287	Prephenate dehydrogenase
JVX96_14120	COG0077	Prephenate dehydratase
JVX96_14120	COG1605	Chorismate mutase
JVX96_14125	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JVX96_14145	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JVX96_14160	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JVX96_14170	COG0154	amidase activity
JVX96_14175	COG0747	negative chemotaxis
JVX96_14180	COG4608	Belongs to the ABC transporter superfamily
JVX96_14185	COG0444	Belongs to the ABC transporter superfamily
JVX96_14190	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_14200	COG0473	3-isopropylmalate dehydrogenase activity
JVX96_14210	COG0656	L-ascorbic acid biosynthetic process
JVX96_14215	COG2233	PERMEase
JVX96_14240	COG1953	Uracil, thiamine, allantoin
JVX96_14250	COG3850	Histidine kinase
JVX96_14250	COG5002	protein histidine kinase activity
JVX96_14270	COG2274	protein secretion by the type I secretion system
JVX96_14315	COG2311	Membrane
JVX96_14355	COG0625	glutathione transferase activity
JVX96_14375	COG3268	Saccharopine dehydrogenase
JVX96_14380	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_14385	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_14400	COG0697	spore germination
JVX96_14410	COG2169	Transcriptional regulator
JVX96_14415	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JVX96_14435	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JVX96_14440	COG1309	transcriptional regulator
JVX96_14445	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JVX96_14475	COG0259	pyridoxamine-phosphate oxidase activity
JVX96_14480	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JVX96_14505	COG0800	Aldolase
JVX96_14520	COG0346	lactoylglutathione lyase activity
JVX96_14540	COG1840	ABC-type Fe3 transport system, periplasmic component
JVX96_14565	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_14575	COG0235	Class ii aldolase
JVX96_14580	COG0800	Aldolase
JVX96_14590	COG0129	dihydroxy-acid dehydratase activity
JVX96_14595	COG2186	Transcriptional regulator
JVX96_14605	COG1175	transmembrane transport
JVX96_14615	COG3842	ATPase activity
JVX96_14625	COG0513	Belongs to the DEAD box helicase family
JVX96_14630	COG0488	(ABC) transporter
JVX96_14635	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JVX96_14640	COG0789	Transcriptional regulator
JVX96_14650	COG3191	aminopeptidase activity
JVX96_14675	COG2132	Multicopper oxidase
JVX96_14695	COG0584	glycerophosphoryl diester phosphodiesterase
JVX96_14705	COG4191	Histidine kinase
JVX96_14705	COG0784	Response regulator, receiver
JVX96_14710	COG0454	-acetyltransferase
JVX96_14725	COG0765	amino acid transport
JVX96_14730	COG0765	amino acid transport
JVX96_14750	COG1764	response to oxidative stress
JVX96_14755	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_14765	COG1525	nuclease
JVX96_14770	COG1252	NADH dehydrogenase
JVX96_14775	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JVX96_14780	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
JVX96_14795	COG0589	response to stress
JVX96_14800	COG0564	pseudouridine synthase activity
JVX96_14815	COG4628	conserved protein (DUF2132)
JVX96_14835	COG2354	Protein conserved in bacteria
JVX96_14890	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_14900	COG0523	cobalamin synthesis protein
JVX96_14910	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_14930	COG2918	glutathione biosynthetic process
JVX96_14935	COG2201	protein-glutamate methylesterase activity
JVX96_14940	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_14950	COG0789	Transcriptional regulator
JVX96_14960	COG0517	IMP dehydrogenase activity
JVX96_14960	COG0617	tRNA 3'-terminal CCA addition
JVX96_14960	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JVX96_14965	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JVX96_14995	COG0004	ammonium transporteR
JVX96_15035	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JVX96_15050	COG3275	phosphorelay sensor kinase activity
JVX96_15075	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_15080	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_15100	COG1737	Transcriptional regulator
JVX96_15105	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX96_15110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_15125	COG1968	undecaprenyl-diphosphatase activity
JVX96_15130	COG4585	Histidine kinase
JVX96_15150	COG0747	negative chemotaxis
JVX96_15155	COG0601	transmembrane transport
JVX96_15160	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_15195	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JVX96_15200	COG5001	Diguanylate cyclase
JVX96_15200	COG4251	negative regulation of phosphorylation
JVX96_15200	COG3706	GGDEF domain
JVX96_15200	COG2203	Gaf domain
JVX96_15205	COG0598	Magnesium transport protein CorA
JVX96_15220	COG2375	cellular response to nickel ion
JVX96_15250	COG1595	DNA-templated transcription, initiation
JVX96_15285	COG1074	ATP-dependent DNA helicase activity
JVX96_15300	COG3119	arylsulfatase activity
JVX96_15315	COG0583	DNA-binding transcription factor activity
JVX96_15320	COG2311	Membrane
JVX96_15330	COG1289	transmembrane transporter activity
JVX96_15335	COG0483	inositol monophosphate 1-phosphatase activity
JVX96_15345	COG1045	serine acetyltransferase
JVX96_15360	COG0475	glutathione-regulated potassium exporter activity
JVX96_15395	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
JVX96_15405	COG0521	Mo-molybdopterin cofactor biosynthetic process
JVX96_15410	COG3028	Belongs to the UPF0307 family
JVX96_15415	COG0312	modulator of DNA gyrase
JVX96_15430	COG0494	nUDIX hydrolase
JVX96_15440	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JVX96_15445	COG2081	HI0933 family
JVX96_15450	COG0791	NLP P60 protein
JVX96_15485	COG3833	ABC-type maltose transport systems, permease component
JVX96_15490	COG1176	ABC-type spermidine putrescine transport system, permease component I
JVX96_15500	COG3842	ATPase activity
JVX96_15510	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JVX96_15515	COG0243	molybdopterin cofactor binding
JVX96_15525	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JVX96_15530	COG0515	serine threonine protein kinase
JVX96_15530	COG2815	serine threonine protein kinase
JVX96_15535	COG2223	nitrite transmembrane transporter activity
JVX96_15545	COG1116	anion transmembrane transporter activity
JVX96_15550	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_15555	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_15560	COG3707	response regulator
JVX96_15565	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JVX96_15580	COG0683	leucine binding
JVX96_15585	COG0436	Aminotransferase
JVX96_15590	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JVX96_15595	COG1185	polyribonucleotide nucleotidyltransferase activity
JVX96_15600	COG3321	synthase
JVX96_15600	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_15600	COG0604	alcohol dehydrogenase
JVX96_15605	COG0149	triose-phosphate isomerase activity
JVX96_15620	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JVX96_15625	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JVX96_15630	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JVX96_15635	COG0649	NAD binding
JVX96_15650	COG1034	ATP synthesis coupled electron transport
JVX96_15655	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JVX96_15660	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JVX96_15670	COG0713	ATP synthesis coupled electron transport
JVX96_15685	COG1007	ATP synthesis coupled electron transport
JVX96_15695	COG0494	nUDIX hydrolase
JVX96_15705	COG1132	(ABC) transporter
JVX96_15710	COG1846	Transcriptional regulator
JVX96_15720	COG1566	PFAM secretion protein HlyD family protein
JVX96_15790	COG1397	ADP-ribosylglycohydrolase
JVX96_15805	COG4941	Belongs to the sigma-70 factor family
JVX96_15810	COG3795	YCII-related domain
JVX96_15835	COG4181	ATPase activity
JVX96_15840	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JVX96_15850	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JVX96_15855	COG0586	Pfam SNARE associated Golgi protein
JVX96_15865	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX96_15870	COG0802	atpase or kinase
JVX96_15875	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JVX96_15890	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JVX96_15895	COG4774	siderophore transport
JVX96_15900	COG3214	Protein conserved in bacteria
JVX96_15920	COG0673	inositol 2-dehydrogenase activity
JVX96_15930	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JVX96_15935	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_15940	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_15950	COG1309	transcriptional regulator
JVX96_15955	COG0028	Belongs to the TPP enzyme family
JVX96_15965	COG2207	Transcriptional regulator
JVX96_15990	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JVX96_15995	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JVX96_16000	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JVX96_16005	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JVX96_16010	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JVX96_16015	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX96_16015	COG0072	phenylalanine-tRNA ligase activity
JVX96_16020	COG0776	regulation of translation
JVX96_16070	COG1462	curli production assembly transport component CsgG
JVX96_16095	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_16105	COG2818	Glycosylase
JVX96_16130	COG0625	glutathione transferase activity
JVX96_16135	COG1183	phosphatidylcholine synthase activity
JVX96_16140	COG0519	Catalyzes the synthesis of GMP from XMP
JVX96_16140	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JVX96_16170	COG0583	DNA-binding transcription factor activity
JVX96_16180	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JVX96_16185	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX96_16225	COG1272	protein, Hemolysin III
JVX96_16235	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JVX96_16240	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JVX96_16245	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_16250	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JVX96_16260	COG1309	transcriptional regulator
JVX96_16270	COG1132	(ABC) transporter
JVX96_16300	COG3384	dioxygenase
JVX96_16340	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JVX96_16350	COG0129	dihydroxy-acid dehydratase activity
JVX96_16370	COG0583	DNA-binding transcription factor activity
JVX96_16395	COG0587	DNA-directed DNA polymerase activity
JVX96_16420	COG0583	DNA-binding transcription factor activity
JVX96_16430	COG0154	amidase activity
JVX96_16435	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_16530	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX96_16535	COG0308	aminopeptidase N
JVX96_16545	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JVX96_16560	COG4251	negative regulation of phosphorylation
JVX96_16565	COG0784	Response regulator, receiver
JVX96_16600	COG3437	response regulator, receiver
JVX96_16605	COG0784	Response regulator, receiver
JVX96_16605	COG2198	Histidine kinase
JVX96_16605	COG2205	protein histidine kinase activity
JVX96_16625	COG3842	ATPase activity
JVX96_16650	COG0540	Belongs to the ATCase OTCase family
JVX96_16680	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_16700	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JVX96_16705	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JVX96_16710	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_16710	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JVX96_16720	COG1741	Belongs to the pirin family
JVX96_16725	COG2259	Doxx family
JVX96_16735	COG1741	Belongs to the pirin family
JVX96_16760	COG1054	Belongs to the UPF0176 family
JVX96_16785	COG0848	biopolymer transport protein
JVX96_16795	COG0824	Thioesterase
JVX96_16800	COG0436	Aminotransferase
JVX96_16805	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JVX96_16810	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JVX96_16825	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX96_16825	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX96_16860	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JVX96_16865	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JVX96_16870	COG0741	lytic transglycosylase activity
JVX96_16900	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JVX96_16920	COG0215	cysteine-tRNA ligase activity
JVX96_16930	COG0825	malonyl-CoA metabolic process
JVX96_16935	COG0037	tRNA processing
JVX96_16940	COG0527	aspartate kinase activity
JVX96_16960	COG4585	Histidine kinase
JVX96_16965	COG4654	Cytochrome c, class I
JVX96_16985	COG2326	polyphosphate kinase activity
JVX96_16995	COG0642	Histidine kinase
JVX96_17005	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_17030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_17045	COG2204	response regulator
JVX96_17080	COG0410	ABC transporter
JVX96_17110	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JVX96_17115	COG1011	Hydrolase
JVX96_17125	COG1280	lysine exporter protein (LysE YggA)
JVX96_17135	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
JVX96_17140	COG1562	ergosterol biosynthetic process
JVX96_17175	COG0544	peptidyl-prolyl cis-trans isomerase activity
JVX96_17180	COG0740	serine-type endopeptidase activity
JVX96_17185	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JVX96_17190	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JVX96_17220	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JVX96_17230	COG2113	Glycine betaine
JVX96_17235	COG4176	ABC-type proline glycine betaine transport system permease component
JVX96_17245	COG0114	fumarate hydratase activity
JVX96_17250	COG2910	NAD(P)H-binding
JVX96_17255	COG0583	DNA-binding transcription factor activity
JVX96_17265	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX96_17275	COG4654	Cytochrome c, class I
JVX96_17285	COG0129	dihydroxy-acid dehydratase activity
JVX96_17290	COG0583	DNA-binding transcription factor activity
JVX96_17295	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JVX96_17300	COG1802	Transcriptional regulator
JVX96_17320	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_17330	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JVX96_17340	COG0730	response to heat
JVX96_17355	COG0038	chloride channel
JVX96_17365	COG1797	cobyrinic acid a,c-diamide synthase activity
JVX96_17380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX96_17390	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JVX96_17395	COG0778	Nitroreductase
JVX96_17415	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
JVX96_17430	COG1346	cytolysis
JVX96_17445	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JVX96_17455	COG0657	acetylesterase activity
JVX96_17460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_17480	COG1492	cobalamin metabolic process
JVX96_17485	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
JVX96_17490	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
JVX96_17505	COG0840	transmembrane signaling receptor activity
JVX96_17515	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JVX96_17520	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_17545	COG0560	Phosphoserine phosphatase
JVX96_17550	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JVX96_17555	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JVX96_17555	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JVX96_17560	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JVX96_17560	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JVX96_17585	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_17595	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JVX96_17610	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
JVX96_17615	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JVX96_17630	COG0557	exoribonuclease II activity
JVX96_17635	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_17640	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JVX96_17640	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JVX96_17660	COG0052	Belongs to the universal ribosomal protein uS2 family
JVX96_17665	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JVX96_17670	COG0528	UMP kinase activity
JVX96_17675	COG0233	cytoplasmic translational termination
JVX96_17680	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JVX96_17685	COG0575	Belongs to the CDS family
JVX96_17690	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JVX96_17695	COG0750	zinc metalloprotease
JVX96_17710	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JVX96_17715	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JVX96_17720	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JVX96_17725	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JVX96_17730	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JVX96_17735	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JVX96_17740	COG0505	Belongs to the CarA family
JVX96_17745	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JVX96_17755	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JVX96_17770	COG1534	Rna-binding protein
JVX96_17775	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JVX96_17780	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX96_17790	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JVX96_17795	COG0454	-acetyltransferase
JVX96_17810	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_17815	COG1024	Enoyl-CoA hydratase
JVX96_17820	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_17825	COG2814	Major facilitator Superfamily
JVX96_17830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX96_17840	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JVX96_17845	COG0252	asparaginase activity
JVX96_17850	COG0563	adenylate kinase activity
JVX96_17855	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JVX96_17860	COG2835	tetraacyldisaccharide 4'-kinase activity
JVX96_17865	COG1663	tetraacyldisaccharide 4'-kinase activity
JVX96_17870	COG0848	biopolymer transport protein
JVX96_17875	COG0811	peptide transport
JVX96_17880	COG1570	exodeoxyribonuclease VII activity
JVX96_17885	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JVX96_17910	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JVX96_17915	COG0542	response to heat
JVX96_17920	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_17925	COG2925	Exonuclease
JVX96_17930	COG0110	maltose O-acetyltransferase activity
JVX96_17945	COG0402	S-adenosylhomocysteine deaminase activity
JVX96_17960	COG1079	Belongs to the binding-protein-dependent transport system permease family
JVX96_17965	COG4603	Belongs to the binding-protein-dependent transport system permease family
JVX96_17970	COG3845	ABC transporter
JVX96_17990	COG1744	ABC transporter substrate-binding protein PnrA-like
JVX96_17995	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JVX96_18010	COG1595	DNA-templated transcription, initiation
JVX96_18020	COG0433	COG0433 Predicted ATPase
JVX96_18035	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JVX96_18085	COG0251	oxidation-reduction process
JVX96_18090	COG2226	methyltransferase
JVX96_18095	COG0217	transcriptional regulatory protein
JVX96_18100	COG0151	Belongs to the GarS family
JVX96_18105	COG0408	coproporphyrinogen oxidase activity
JVX96_18110	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JVX96_18115	COG0799	negative regulation of ribosome biogenesis
JVX96_18120	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JVX96_18125	COG0424	maF-like protein
JVX96_18130	COG1530	ribonuclease E activity
JVX96_18135	COG1132	(ABC) transporter
JVX96_18140	COG0823	Involved in the tonB-independent uptake of proteins
JVX96_18145	COG2885	chlorophyll binding
JVX96_18155	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JVX96_18170	COG0477	Major facilitator Superfamily
JVX96_18180	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JVX96_18185	COG3800	Transcriptional regulator
JVX96_18185	COG1396	sequence-specific DNA binding
JVX96_18220	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_18225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_18235	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
JVX96_18260	COG0488	(ABC) transporter
JVX96_18265	COG2890	protein-(glutamine-N5) methyltransferase activity
JVX96_18270	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JVX96_18280	COG2171	N-acyltransferase activity
JVX96_18295	COG1280	lysine exporter protein (LysE YggA)
JVX96_18300	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JVX96_18300	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JVX96_18305	COG1643	Atp-dependent helicase
JVX96_18315	COG0436	Aminotransferase
JVX96_18320	COG0583	DNA-binding transcription factor activity
JVX96_18330	COG0795	lipopolysaccharide-transporting ATPase activity
JVX96_18340	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JVX96_18390	COG1793	dna ligase
JVX96_18395	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JVX96_18405	COG4174	ABC transporter (Permease)
JVX96_18410	COG4239	(ABC) transporter, permease
JVX96_18415	COG4172	Belongs to the ABC transporter superfamily
JVX96_18420	COG0477	Major facilitator Superfamily
JVX96_18425	COG0779	Required for maturation of 30S ribosomal subunits
JVX96_18430	COG2251	uridine kinase activity
JVX96_18430	COG0195	Participates in both transcription termination and antitermination
JVX96_18435	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JVX96_18440	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JVX96_18445	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JVX96_18480	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JVX96_18485	COG2867	negative regulation of translational initiation
JVX96_18515	COG0519	Catalyzes the synthesis of GMP from XMP
JVX96_18515	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JVX96_18525	COG0604	alcohol dehydrogenase
JVX96_18530	COG0596	Alpha beta hydrolase
JVX96_18535	COG0604	alcohol dehydrogenase
JVX96_18545	COG1902	pentaerythritol trinitrate reductase activity
JVX96_18600	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_18620	COG4191	Histidine kinase
JVX96_18625	COG4566	intracellular signal transduction
JVX96_18655	COG1619	proteins homologs of microcin C7 resistance protein MccF
JVX96_18695	COG2205	protein histidine kinase activity
JVX96_18695	COG0784	Response regulator, receiver
JVX96_18705	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JVX96_18710	COG4999	Histidine kinase
JVX96_18710	COG3850	Histidine kinase
JVX96_18710	COG3437	response regulator, receiver
JVX96_18710	COG2205	protein histidine kinase activity
JVX96_18730	COG1199	ATP-dependent helicase activity
JVX96_18730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JVX96_18750	COG0363	glucosamine-6-phosphate deaminase activity
JVX96_18780	COG0156	8-amino-7-oxononanoate synthase activity
JVX96_18785	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JVX96_18790	COG0667	Aldo Keto reductase
JVX96_18795	COG2207	Transcriptional regulator
JVX96_18800	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JVX96_18805	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JVX96_18810	COG0251	oxidation-reduction process
JVX96_18820	COG2814	Major facilitator Superfamily
JVX96_18845	COG0667	Aldo Keto reductase
JVX96_18865	COG2423	ornithine cyclodeaminase activity
JVX96_18875	COG2031	fatty acid transporter
JVX96_18880	COG0583	DNA-binding transcription factor activity
JVX96_18895	COG2205	protein histidine kinase activity
JVX96_18900	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_18905	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_18915	COG1126	abc transporter atp-binding protein
JVX96_18920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_18930	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_18955	COG2197	response regulator
JVX96_18980	COG0765	amino acid transport
JVX96_18985	COG0765	amino acid transport
JVX96_19000	COG3608	succinylglutamate desuccinylase aspartoacylase
JVX96_19010	COG0045	succinate-CoA ligase (ADP-forming) activity
JVX96_19010	COG1042	CoA-binding domain protein
JVX96_19010	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX96_19015	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JVX96_19040	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_19055	COG3360	Dodecin
JVX96_19065	COG1116	anion transmembrane transporter activity
JVX96_19095	COG2197	response regulator
JVX96_19100	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JVX96_19105	COG0297	glycogen (starch) synthase activity
JVX96_19140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_19145	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JVX96_19150	COG0489	protein tyrosine kinase activity
JVX96_19150	COG3206	protein involved in exopolysaccharide biosynthesis
JVX96_19175	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX96_19190	COG1388	LysM domain
JVX96_19190	COG4942	peptidase
JVX96_19200	COG0420	3'-5' exonuclease activity
JVX96_19210	COG1349	DNA-binding transcription factor activity
JVX96_19245	COG0666	response to abiotic stimulus
JVX96_19250	COG0084	hydrolase, TatD family'
JVX96_19265	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JVX96_19270	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JVX96_19365	COG0745	RESPONSE REGULATOR receiver
JVX96_19380	COG1538	Outer membrane efflux protein
JVX96_19410	COG2183	response to ionizing radiation
JVX96_19420	COG2201	protein-glutamate methylesterase activity
JVX96_19460	COG0534	Mate efflux family protein
JVX96_19470	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JVX96_19480	COG0477	Major facilitator Superfamily
JVX96_19490	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JVX96_19490	COG3008	intermembrane lipid transfer
JVX96_19495	COG2995	paraquat-inducible protein a
JVX96_19500	COG2995	paraquat-inducible protein a
JVX96_19505	COG2814	Major facilitator Superfamily
JVX96_19510	COG2814	Major facilitator Superfamily
JVX96_19525	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_19550	COG0583	DNA-binding transcription factor activity
JVX96_19560	COG0583	DNA-binding transcription factor activity
JVX96_19570	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JVX96_19580	COG0277	FAD linked oxidase domain protein
JVX96_19580	COG0247	lactate metabolic process
JVX96_19585	COG1802	Transcriptional regulator
JVX96_19605	COG0583	DNA-binding transcription factor activity
JVX96_19610	COG2814	Major facilitator Superfamily
JVX96_19640	COG1971	Probably functions as a manganese efflux pump
JVX96_19645	COG0583	DNA-binding transcription factor activity
JVX96_19650	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JVX96_19665	COG1960	acyl-CoA dehydrogenase activity
JVX96_19670	COG2130	NADP-dependent
JVX96_19695	COG1960	acyl-CoA dehydrogenase activity
JVX96_19700	COG0183	Belongs to the thiolase family
JVX96_19710	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_19710	COG1024	Enoyl-CoA hydratase
JVX96_19720	COG0411	ABC transporter
JVX96_19730	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_19745	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_19750	COG2272	Belongs to the type-B carboxylesterase lipase family
JVX96_19760	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JVX96_19765	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JVX96_19770	COG2917	probably involved in intracellular septation
JVX96_19780	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX96_19785	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JVX96_19785	COG0047	phosphoribosylformylglycinamidine synthase activity
JVX96_19790	COG0024	Methionine aminopeptidase
JVX96_19795	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JVX96_19800	COG2203	Gaf domain
JVX96_19800	COG2199	diguanylate cyclase activity
JVX96_19805	COG5002	protein histidine kinase activity
JVX96_19805	COG3447	MASE1 domain protein
JVX96_19805	COG5001	Diguanylate cyclase
JVX96_19825	COG1215	transferase activity, transferring glycosyl groups
JVX96_19830	COG1215	transferase activity, transferring glycosyl groups
JVX96_19835	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JVX96_19840	COG0457	Tetratricopeptide repeat
JVX96_19865	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JVX96_19875	COG0765	amino acid transport
JVX96_19880	COG4597	amino acid ABC transporter
JVX96_19885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_19890	COG2259	Doxx family
JVX96_19895	COG0242	peptide deformylase activity
JVX96_19905	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JVX96_19915	COG1196	nuclear chromosome segregation
JVX96_19930	COG1538	Outer membrane efflux protein
JVX96_19940	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_19945	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JVX96_19950	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JVX96_19955	COG4208	sulfate ABC transporter
JVX96_19965	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JVX96_19975	COG0450	alkyl hydroperoxide reductase
JVX96_19985	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JVX96_19995	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX96_20000	COG3550	peptidyl-serine autophosphorylation
JVX96_20015	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JVX96_20020	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_20030	COG1045	serine acetyltransferase
JVX96_20055	COG0778	Nitroreductase
JVX96_20065	COG1116	anion transmembrane transporter activity
JVX96_20070	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_20075	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_20080	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_20085	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_20095	COG0431	NADPH-dependent FMN reductase
JVX96_20105	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JVX96_20110	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_20110	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JVX96_20130	COG0584	glycerophosphoryl diester phosphodiesterase
JVX96_20140	COG5002	protein histidine kinase activity
JVX96_20145	COG0745	RESPONSE REGULATOR receiver
JVX96_20150	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
JVX96_20155	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JVX96_20165	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JVX96_20190	COG0427	acetyl-CoA hydrolase
JVX96_20195	COG3588	fructose-bisphosphate aldolase
JVX96_20215	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_20220	COG0583	DNA-binding transcription factor activity
JVX96_20225	COG1803	Methylglyoxal synthase
JVX96_20245	COG2755	lipolytic protein G-D-S-L family
JVX96_20245	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JVX96_20255	COG1446	asparaginase
JVX96_20260	COG4172	Belongs to the ABC transporter superfamily
JVX96_20270	COG0601	transmembrane transport
JVX96_20275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_20310	COG0175	sulfate reduction
JVX96_20320	COG2895	sulfate adenylyltransferase (ATP) activity
JVX96_20325	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JVX96_20330	COG0492	ferredoxin-NADP+ reductase activity
JVX96_20345	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
JVX96_20355	COG0351	phosphomethylpyrimidine kinase
JVX96_20370	COG2022	thiamine diphosphate biosynthetic process
JVX96_20400	COG1742	UPF0060 membrane protein
JVX96_20405	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JVX96_20435	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_20450	COG1414	Transcriptional regulator
JVX96_20475	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JVX96_20480	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JVX96_20485	COG1414	Transcriptional regulator
JVX96_20495	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX96_20500	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX96_20505	COG1183	phosphatidylcholine synthase activity
JVX96_20510	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JVX96_20520	COG0440	acetolactate synthase activity
JVX96_20525	COG0028	Belongs to the TPP enzyme family
JVX96_20550	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JVX96_20580	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JVX96_20610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_20670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_20680	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_20700	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JVX96_20705	COG0746	molybdenum cofactor guanylyltransferase activity
JVX96_20720	COG0328	RNA-DNA hybrid ribonuclease activity
JVX96_20730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX96_20735	COG0741	lytic transglycosylase activity
JVX96_20735	COG1388	LysM domain
JVX96_20745	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_20755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_20765	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JVX96_20770	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JVX96_20775	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JVX96_20790	COG1074	ATP-dependent DNA helicase activity
JVX96_20805	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JVX96_20810	COG0673	inositol 2-dehydrogenase activity
JVX96_20815	COG0254	rRNA binding
JVX96_20825	COG0534	Mate efflux family protein
JVX96_20830	COG5002	protein histidine kinase activity
JVX96_20845	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JVX96_20850	COG0581	inorganic phosphate transmembrane transporter activity
JVX96_20855	COG0573	inorganic phosphate transmembrane transporter activity
JVX96_20860	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JVX96_20865	COG0248	Ppx GppA phosphatase
JVX96_20885	COG3634	alkyl hydroperoxide reductase activity
JVX96_20955	COG4695	Portal protein
JVX96_21095	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JVX96_21190	COG0625	glutathione transferase activity
JVX96_21215	COG2267	carboxylic ester hydrolase activity
JVX96_21220	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX96_21225	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_21230	COG2186	Transcriptional regulator
JVX96_21240	COG0235	Class ii aldolase
JVX96_21245	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_21280	COG1960	acyl-CoA dehydrogenase activity
JVX96_21290	COG1024	Enoyl-CoA hydratase
JVX96_21310	COG1522	sequence-specific DNA binding
JVX96_21315	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_21320	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_21335	COG2199	diguanylate cyclase activity
JVX96_21335	COG2200	EAL domain
JVX96_21335	COG2202	Pas domain
JVX96_21340	COG3706	GGDEF domain
JVX96_21350	COG0456	acetyltransferase
JVX96_21350	COG1846	Transcriptional regulator
JVX96_21355	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_21360	COG4689	acetoacetate decarboxylase
JVX96_21380	COG1295	ribonuclease BN
JVX96_21390	COG2059	Chromate
JVX96_21395	COG0667	Aldo Keto reductase
JVX96_21425	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JVX96_21440	COG4181	ATPase activity
JVX96_21455	COG0626	cystathionine gamma-synthase activity
JVX96_21475	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JVX96_21480	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
JVX96_21490	COG0330	HflC and HflK could
JVX96_21495	COG0330	HflC and HflK could
JVX96_21500	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JVX96_21505	COG1923	regulation of RNA biosynthetic process
JVX96_21510	COG1160	GTP binding
JVX96_21515	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JVX96_21525	COG0124	histidyl-tRNA synthetase
JVX96_21530	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JVX96_21545	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JVX96_21550	COG0105	UTP biosynthetic process
JVX96_21555	COG1187	pseudouridine synthase activity
JVX96_21560	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JVX96_21565	COG0564	pseudouridine synthase activity
JVX96_21575	COG1199	ATP-dependent helicase activity
JVX96_21595	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JVX96_21600	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX96_21605	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX96_21610	COG0567	Dehydrogenase, E1 component
JVX96_21630	COG2368	4-hydroxyphenylacetate
JVX96_21640	COG0791	NLP P60 protein
JVX96_21645	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX96_21650	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JVX96_21655	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX96_21660	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JVX96_21670	COG4566	intracellular signal transduction
JVX96_21675	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JVX96_21690	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JVX96_21695	COG0167	dihydroorotate dehydrogenase activity
JVX96_21710	COG0579	oxidoreductase
JVX96_21725	COG0633	Ferredoxin
JVX96_21730	COG0443	Heat shock 70 kDa protein
JVX96_21735	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JVX96_21745	COG0822	iron-sulfur transferase activity
JVX96_21750	COG1104	cysteine desulfurase activity
JVX96_21755	COG1959	2 iron, 2 sulfur cluster binding
JVX96_21760	COG0556	nucleotide-excision repair
JVX96_21775	COG2878	Part of a membrane complex involved in electron transport
JVX96_21785	COG0697	spore germination
JVX96_21790	COG1522	sequence-specific DNA binding
JVX96_21800	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JVX96_21805	COG4770	biotin carboxylase activity
JVX96_21810	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JVX96_21815	COG1703	isobutyryl-CoA mutase activity
JVX96_21825	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JVX96_21825	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JVX96_21830	COG1802	Transcriptional regulator
JVX96_21865	COG0028	Belongs to the TPP enzyme family
JVX96_21875	COG2885	chlorophyll binding
JVX96_21895	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_21925	COG0583	DNA-binding transcription factor activity
JVX96_21930	COG2249	NAD(P)H dehydrogenase (quinone) activity
JVX96_21955	COG0583	DNA-binding transcription factor activity
JVX96_21970	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_22000	COG1309	transcriptional regulator
JVX96_22005	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JVX96_22010	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JVX96_22025	COG3845	ABC transporter
JVX96_22035	COG4603	Belongs to the binding-protein-dependent transport system permease family
JVX96_22040	COG0402	S-adenosylhomocysteine deaminase activity
JVX96_22100	COG1793	dna ligase
JVX96_22130	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX96_22185	COG4774	siderophore transport
JVX96_22200	COG4651	solute:proton antiporter activity
JVX96_22200	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JVX96_22205	COG1301	dicarboxylic acid transport
JVX96_22210	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_22220	COG1546	Belongs to the CinA family
JVX96_22220	COG1058	Belongs to the CinA family
JVX96_22235	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_22240	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
JVX96_22250	COG0583	DNA-binding transcription factor activity
JVX96_22260	COG0625	glutathione transferase activity
JVX96_22270	COG0183	Belongs to the thiolase family
JVX96_22275	COG3243	poly(R)-hydroxyalkanoic acid synthase
JVX96_22310	COG3045	CreA protein
JVX96_22325	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_22335	COG0583	DNA-binding transcription factor activity
JVX96_22345	COG3145	DNA-N1-methyladenine dioxygenase activity
JVX96_22370	COG0840	transmembrane signaling receptor activity
JVX96_22395	COG1640	4-alpha-glucanotransferase
JVX96_22415	COG0366	Alpha amylase catalytic
JVX96_22420	COG0366	Alpha amylase catalytic
JVX96_22425	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JVX96_22445	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_22450	COG2877	3-deoxy-8-phosphooctulonate synthase activity
JVX96_22460	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JVX96_22470	COG0840	transmembrane signaling receptor activity
JVX96_22480	COG0583	DNA-binding transcription factor activity
JVX96_22485	COG2159	amidohydrolase
JVX96_22495	COG3384	dioxygenase
JVX96_22510	COG0277	FAD linked oxidase domain protein
JVX96_22515	COG5383	Protein conserved in bacteria
JVX96_22555	COG1024	Enoyl-CoA hydratase
JVX96_22580	COG0436	Aminotransferase
JVX96_22590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_22625	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX96_22630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_22645	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_22650	COG3284	Transcriptional regulator
JVX96_22660	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
JVX96_22665	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_22670	COG0545	Peptidyl-prolyl cis-trans isomerase
JVX96_22675	COG0531	amino acid
JVX96_22680	COG4303	Ethanolamine ammonia lyase large subunit
JVX96_22685	COG4302	ethanolamine ammonia-lyase activity
JVX96_22715	COG0671	phosphoesterase, PA-phosphatase related
JVX96_22725	COG0745	RESPONSE REGULATOR receiver
JVX96_22730	COG0642	Histidine kinase
JVX96_22745	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_22760	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_22765	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_22775	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JVX96_22775	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JVX96_22785	COG2223	nitrite transmembrane transporter activity
JVX96_22815	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_22830	COG2814	Major facilitator Superfamily
JVX96_22835	COG2072	flavoprotein involved in K transport
JVX96_22855	COG1902	pentaerythritol trinitrate reductase activity
JVX96_22860	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JVX96_22865	COG0509	glycine decarboxylation via glycine cleavage system
JVX96_22870	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JVX96_22870	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JVX96_22885	COG1309	transcriptional regulator
JVX96_22905	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JVX96_22920	COG3148	PFAM DTW domain containing protein
JVX96_22930	COG2207	Transcriptional regulator
JVX96_22930	COG1609	Transcriptional regulator
JVX96_22985	COG0477	Major facilitator Superfamily
JVX96_22990	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JVX96_22990	COG1082	Xylose isomerase domain protein TIM barrel
JVX96_22995	COG0596	Alpha beta hydrolase
JVX96_23000	COG2814	Major facilitator Superfamily
JVX96_23010	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JVX96_23015	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JVX96_23020	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JVX96_23025	COG1414	Transcriptional regulator
JVX96_23040	COG0745	RESPONSE REGULATOR receiver
JVX96_23120	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JVX96_23130	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JVX96_23155	COG3128	pkhd-type hydroxylase
JVX96_23160	COG1024	Enoyl-CoA hydratase
JVX96_23165	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_23175	COG2030	dehydratase
JVX96_23185	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_23210	COG1294	oxidase, subunit
JVX96_23215	COG1271	oxidase subunit
JVX96_23220	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JVX96_23225	COG4988	ABC transporter
JVX96_23240	COG1960	acyl-CoA dehydrogenase activity
JVX96_23270	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_23280	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX96_23285	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX96_23305	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_23320	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JVX96_23325	COG1511	domain protein
JVX96_23325	COG3264	Mechanosensitive ion channel
JVX96_23335	COG0714	Associated with various cellular activities
JVX96_23350	COG2951	lytic endotransglycosylase activity
JVX96_23370	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX96_23380	COG1131	(ABC) transporter
JVX96_23395	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JVX96_23415	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JVX96_23425	COG2194	sulfuric ester hydrolase activity
JVX96_23430	COG2831	hemolysin activation secretion protein
JVX96_23445	COG3210	domain, Protein
JVX96_23445	COG3210	domain, Protein
JVX96_23455	COG2308	Evidence 4 Homologs of previously reported genes of
JVX96_23460	COG1024	Enoyl-CoA hydratase
JVX96_23485	COG1305	Transglutaminase-like
JVX96_23510	COG3196	Protein conserved in bacteria
JVX96_23515	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_23520	COG0583	DNA-binding transcription factor activity
JVX96_23530	COG1024	Enoyl-CoA hydratase
JVX96_23545	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_23565	COG3942	CHAP domain
JVX96_23565	COG1388	LysM domain
JVX96_23575	COG2205	protein histidine kinase activity
JVX96_23575	COG0784	Response regulator, receiver
JVX96_23605	COG1609	Transcriptional regulator
JVX96_23615	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JVX96_23625	COG1126	abc transporter atp-binding protein
JVX96_23630	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_23635	COG0765	amino acid transport
JVX96_23640	COG0765	amino acid transport
JVX96_23670	COG0739	heme binding
JVX96_23670	COG1196	nuclear chromosome segregation
JVX96_23670	COG0741	lytic transglycosylase activity
JVX96_23685	COG2814	Major facilitator Superfamily
JVX96_23700	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_23705	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JVX96_23725	COG2850	peptidyl-arginine hydroxylation
JVX96_23730	COG1047	Peptidyl-prolyl cis-trans
JVX96_23740	COG0756	dUTP diphosphatase activity
JVX96_23750	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JVX96_23755	COG0504	CTP synthase activity
JVX96_23765	COG0148	phosphopyruvate hydratase activity
JVX96_23770	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JVX96_23775	COG3201	nicotinamide mononucleotide transporter
JVX96_23790	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JVX96_23800	COG2833	Protein of unknown function (DUF455)
JVX96_23810	COG0183	Belongs to the thiolase family
JVX96_23815	COG1309	transcriptional regulator
JVX96_23820	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_23835	COG4974	Belongs to the 'phage' integrase family
JVX96_23840	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_23855	COG2814	Major facilitator Superfamily
JVX96_23870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX96_23885	COG3712	iron ion homeostasis
JVX96_23890	COG1595	DNA-templated transcription, initiation
JVX96_23915	COG0583	DNA-binding transcription factor activity
JVX96_23930	COG0183	Belongs to the thiolase family
JVX96_23940	COG0542	response to heat
JVX96_23950	COG0314	molybdopterin synthase activity
JVX96_23955	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_23965	COG0303	'Molybdopterin
JVX96_23970	COG1763	Mo-molybdopterin cofactor biosynthetic process
JVX96_23975	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JVX96_23990	COG0436	Aminotransferase
JVX96_24000	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JVX96_24005	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JVX96_24030	COG0305	Participates in initiation and elongation during chromosome replication
JVX96_24035	COG0359	binds to the 23S rRNA
JVX96_24040	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JVX96_24045	COG2965	DNA replication, synthesis of RNA primer
JVX96_24050	COG0360	Binds together with S18 to 16S ribosomal RNA
JVX96_24065	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JVX96_24070	COG3634	alkyl hydroperoxide reductase activity
JVX96_24100	COG1477	protein flavinylation
JVX96_24105	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JVX96_24110	COG3128	pkhd-type hydroxylase
JVX96_24140	COG3193	protein, possibly involved in utilization of glycolate and propanediol
JVX96_24145	COG0670	Belongs to the BI1 family
JVX96_24150	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JVX96_24165	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JVX96_24170	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JVX96_24245	COG3620	sequence-specific DNA binding
JVX96_24595	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX96_24610	COG0473	3-isopropylmalate dehydrogenase activity
JVX96_24615	COG0596	Alpha beta hydrolase
JVX96_24620	COG0583	DNA-binding transcription factor activity
JVX96_24635	COG0322	excinuclease ABC activity
JVX96_24640	COG0405	Gamma-glutamyltransferase
JVX96_24655	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JVX96_24660	COG1611	Belongs to the LOG family
JVX96_24670	COG1322	Protein conserved in bacteria
JVX96_24675	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX96_24685	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JVX96_24690	COG3237	CsbD-like
JVX96_24705	COG0123	including yeast histone deacetylase and acetoin utilization protein
JVX96_24720	COG1295	ribonuclease BN
JVX96_24720	COG1959	2 iron, 2 sulfur cluster binding
JVX96_24735	COG2814	Major facilitator Superfamily
JVX96_24745	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_24750	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_24755	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX96_24760	COG0583	DNA-binding transcription factor activity
JVX96_24805	COG1802	Transcriptional regulator
JVX96_24815	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JVX96_24825	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX96_24850	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_24860	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_24865	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_24870	COG2186	Transcriptional regulator
JVX96_24875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX96_24885	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_24895	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JVX96_24900	COG2721	sulfolactate sulfo-lyase activity
JVX96_24905	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_24920	COG0688	phosphatidylethanolamine metabolic process
JVX96_24935	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JVX96_24940	COG0443	Heat shock 70 kDa protein
JVX96_24945	COG0484	heat shock protein binding
JVX96_24950	COG2766	serine protein kinase
JVX96_24955	COG2718	Belongs to the UPF0229 family
JVX96_24960	COG2719	SpoVR family
JVX96_24965	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JVX96_24990	COG0625	glutathione transferase activity
JVX96_25000	COG0596	Alpha beta hydrolase
JVX96_25005	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JVX96_25015	COG0346	lactoylglutathione lyase activity
JVX96_25020	COG3070	regulator of competence-specific genes
JVX96_25040	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JVX96_25050	COG0431	NADPH-dependent FMN reductase
JVX96_25060	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JVX96_25090	COG1538	Outer membrane efflux protein
JVX96_25100	COG1522	sequence-specific DNA binding
JVX96_25160	COG0583	DNA-binding transcription factor activity
JVX96_25165	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JVX96_25170	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_25185	COG2267	carboxylic ester hydrolase activity
JVX96_25195	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_25205	COG0583	DNA-binding transcription factor activity
JVX96_25215	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX96_25225	COG1295	ribonuclease BN
JVX96_25235	COG0277	FAD linked oxidase domain protein
JVX96_25240	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JVX96_25325	COG1301	dicarboxylic acid transport
JVX96_25335	COG1301	dicarboxylic acid transport
JVX96_25390	COG2197	response regulator
JVX96_25415	COG0745	RESPONSE REGULATOR receiver
JVX96_25420	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JVX96_25425	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_25435	COG0765	amino acid transport
JVX96_25440	COG0765	amino acid transport
JVX96_25445	COG4221	oxidoreductase activity
JVX96_25450	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_25460	COG1984	allophanate hydrolase subunit 2
JVX96_25465	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JVX96_25470	COG0439	Biotin carboxylase
JVX96_25475	COG0511	ligase activity, forming carbon-carbon bonds
JVX96_25485	COG0436	Aminotransferase
JVX96_25490	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JVX96_25495	COG0583	DNA-binding transcription factor activity
JVX96_25500	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_25510	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_25515	COG4948	Mandelate Racemase Muconate Lactonizing
JVX96_25520	COG0708	Exodeoxyribonuclease III
JVX96_25535	COG3852	Histidine kinase
JVX96_25545	COG0174	glutamine synthetase
JVX96_25550	COG1546	Belongs to the CinA family
JVX96_25550	COG1058	Belongs to the CinA family
JVX96_25575	COG1187	pseudouridine synthase activity
JVX96_25585	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JVX96_25585	COG4797	methyltransferase
JVX96_25610	COG0776	regulation of translation
JVX96_25630	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JVX96_25655	COG0285	dihydrofolate synthase activity
JVX96_25660	COG1393	Belongs to the ArsC family
JVX96_25670	COG3123	guanosine phosphorylase activity
JVX96_25675	COG0137	argininosuccinate synthase activity
JVX96_25685	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JVX96_25690	COG1666	GTP binding
JVX96_25700	COG0251	oxidation-reduction process
JVX96_25705	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JVX96_25710	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JVX96_25715	COG0667	Aldo Keto reductase
JVX96_25720	COG2267	carboxylic ester hydrolase activity
JVX96_25725	COG0667	Aldo Keto reductase
JVX96_25730	COG0583	DNA-binding transcription factor activity
JVX96_25735	COG1464	Belongs to the NlpA lipoprotein family
JVX96_25755	COG2011	ABC-type metal ion transport system permease component
JVX96_25765	COG1464	Belongs to the NlpA lipoprotein family
JVX96_25775	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JVX96_25780	COG0308	aminopeptidase N
JVX96_25785	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JVX96_25815	COG3209	COG3209 Rhs family protein
JVX96_25840	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JVX96_25860	COG1129	ABC transporter
JVX96_25880	COG4154	Belongs to the RbsD FucU family
JVX96_25885	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_25900	COG1522	sequence-specific DNA binding
JVX96_25915	COG3302	dmso reductase anchor subunit
JVX96_25920	COG0437	4 iron, 4 sulfur cluster binding
JVX96_25925	COG0243	molybdopterin cofactor binding
JVX96_25930	COG0583	DNA-binding transcription factor activity
JVX96_25935	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JVX96_25945	COG1414	Transcriptional regulator
JVX96_25975	COG1414	Transcriptional regulator
JVX96_25980	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JVX96_25985	COG0477	Major facilitator Superfamily
JVX96_26040	COG2226	methyltransferase
JVX96_26045	COG1309	transcriptional regulator
JVX96_26065	COG0604	alcohol dehydrogenase
JVX96_26085	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JVX96_26105	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JVX96_26125	COG2814	Major facilitator Superfamily
JVX96_26135	COG5002	protein histidine kinase activity
JVX96_26145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_26160	COG0667	Aldo Keto reductase
JVX96_26165	COG3540	Alkaline phosphatase
JVX96_26170	COG2814	Major facilitator Superfamily
JVX96_26220	COG0306	phosphate transporter
JVX96_26230	COG0613	PHP domain protein
JVX96_26240	COG0009	L-threonylcarbamoyladenylate synthase
JVX96_26245	COG1994	Peptidase M50
JVX96_26250	COG0180	Tryptophanyl-tRNA synthetase
JVX96_26255	COG2197	response regulator
JVX96_26260	COG5002	protein histidine kinase activity
JVX96_26265	COG1950	PFAM Membrane protein of
JVX96_26280	COG0583	DNA-binding transcription factor activity
JVX96_26285	COG1609	Transcriptional regulator
JVX96_26290	COG1063	alcohol dehydrogenase
JVX96_26295	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX96_26300	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_26305	COG3265	gluconokinase activity
JVX96_26310	COG3387	PFAM Glycoside hydrolase 15-related
JVX96_26315	COG1191	sigma factor activity
JVX96_26330	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX96_26340	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JVX96_26355	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
JVX96_26360	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JVX96_26365	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JVX96_26395	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX96_26415	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JVX96_26430	COG1677	Flagellar hook-basal body complex protein FliE
JVX96_26435	COG1766	The M ring may be actively involved in energy transduction
JVX96_26445	COG1317	bacterial-type flagellum organization
JVX96_26455	COG2882	bacterial-type flagellum organization
JVX96_26465	COG1580	Controls the rotational direction of flagella during chemotaxis
JVX96_26490	COG1987	bacterial-type flagellum assembly
JVX96_26500	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JVX96_26510	COG1256	bacterial-type flagellum assembly
JVX96_26540	COG0840	transmembrane signaling receptor activity
JVX96_26565	COG0835	chemotaxis
JVX96_26570	COG1705	Flagellar rod assembly protein muramidase FlgJ
JVX96_26570	COG3951	Flagellar rod assembly protein muramidase FlgJ
JVX96_26575	COG1706	bacterial-type flagellum-dependent cell motility
JVX96_26580	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JVX96_26595	COG1749	Flagellar hook protein flgE
JVX96_26605	COG1558	bacterial-type flagellum-dependent cell motility
JVX96_26610	COG1815	bacterial-type flagellum-dependent cell motility
JVX96_26640	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JVX96_26650	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JVX96_26655	COG1047	Peptidyl-prolyl cis-trans
JVX96_26660	COG2003	Belongs to the UPF0758 family
JVX96_26685	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JVX96_26695	COG0765	amino acid transport
JVX96_26700	COG0765	amino acid transport
JVX96_26710	COG3491	Belongs to the iron ascorbate-dependent oxidoreductase family
JVX96_26720	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JVX96_26725	COG0477	Major facilitator Superfamily
JVX96_26730	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JVX96_26735	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JVX96_26740	COG1845	cytochrome c oxidase, subunit III
JVX96_26745	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JVX96_26760	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
JVX96_26765	COG1272	protein, Hemolysin III
JVX96_26770	COG2900	Belongs to the SlyX family
JVX96_26775	COG0477	Major facilitator Superfamily
JVX96_26780	COG0583	DNA-binding transcription factor activity
JVX96_26800	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JVX96_26815	COG0437	4 iron, 4 sulfur cluster binding
JVX96_26820	COG2864	formate dehydrogenase
JVX96_26835	COG3276	selenocysteine insertion sequence binding
JVX96_26850	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JVX96_26855	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JVX96_26860	COG3639	organic phosphonate transmembrane transporter activity
JVX96_26865	COG3639	organic phosphonate transmembrane transporter activity
JVX96_26870	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
JVX96_26900	COG3210	domain, Protein
JVX96_26910	COG2831	hemolysin activation secretion protein
JVX96_26915	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JVX96_26925	COG0243	molybdopterin cofactor binding
JVX96_26930	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JVX96_26935	COG0725	ABC transporter, periplasmic molybdate-binding protein
JVX96_26940	COG4149	molybdate abc transporter
JVX96_26955	COG2223	nitrite transmembrane transporter activity
JVX96_26960	COG0583	DNA-binding transcription factor activity
JVX96_26965	COG0489	protein tyrosine kinase activity
JVX96_26985	COG1473	amidohydrolase
JVX96_26990	COG1522	sequence-specific DNA binding
JVX96_26995	COG3548	integral membrane protein
JVX96_27010	COG3132	Protein of unknown function, DUF480
JVX96_27015	COG0473	3-isopropylmalate dehydrogenase activity
JVX96_27030	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX96_27030	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX96_27035	COG0659	secondary active sulfate transmembrane transporter activity
JVX96_27055	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JVX96_27060	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JVX96_27065	COG0602	queuosine metabolic process
JVX96_27070	COG0720	synthase
JVX96_27075	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JVX96_27085	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JVX96_27090	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JVX96_27100	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JVX96_27105	COG0588	phosphoglycerate mutase activity
JVX96_27110	COG0793	Belongs to the peptidase S41A family
JVX96_27115	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JVX96_27120	COG2982	Protein involved in outer membrane biogenesis
JVX96_27130	COG2197	response regulator
JVX96_27165	COG2823	Periplasmic or secreted lipoprotein
JVX96_27170	COG3237	CsbD-like
JVX96_27200	COG0494	nUDIX hydrolase
JVX96_27205	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JVX96_27220	COG4145	pantothenate transmembrane transporter activity
JVX96_27225	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JVX96_27240	COG2226	methyltransferase
JVX96_27260	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX96_27265	COG1653	transport
JVX96_27270	COG1175	transmembrane transport
JVX96_27275	COG0395	ABC-type sugar transport system, permease component
JVX96_27280	COG3842	ATPase activity
JVX96_27285	COG0584	glycerophosphoryl diester phosphodiesterase
JVX96_27290	COG1511	domain protein
JVX96_27290	COG3264	Mechanosensitive ion channel
JVX96_27295	COG1522	sequence-specific DNA binding
JVX96_27305	COG4120	Belongs to the binding-protein-dependent transport system permease family
JVX96_27310	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JVX96_27325	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JVX96_27330	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JVX96_27335	COG2890	protein-(glutamine-N5) methyltransferase activity
JVX96_27340	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JVX96_27350	COG1253	flavin adenine dinucleotide binding
JVX96_27360	COG0442	prolyl-tRNA aminoacylation
JVX96_27365	COG0494	nUDIX hydrolase
JVX96_27375	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JVX96_27380	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JVX96_27385	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JVX96_27390	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JVX96_27395	COG0142	geranyltranstransferase activity
JVX96_27415	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JVX96_27425	COG1696	Membrane protein involved in D-alanine export
JVX96_27435	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JVX96_27440	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JVX96_27445	COG2755	lipolytic protein G-D-S-L family
JVX96_27445	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JVX96_27455	COG0494	nUDIX hydrolase
JVX96_27465	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JVX96_27470	COG0653	protein targeting
JVX96_27480	COG2423	ornithine cyclodeaminase activity
JVX96_27485	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JVX96_27500	COG0583	DNA-binding transcription factor activity
JVX96_27520	COG0831	urea catabolic process
JVX96_27530	COG0832	Belongs to the urease beta subunit family
JVX96_27535	COG0804	urea catabolic process
JVX96_27540	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
JVX96_27545	COG0830	nickel cation binding
JVX96_27550	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JVX96_27570	COG0288	reversible hydration of carbon dioxide
JVX96_27580	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_27585	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_27595	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_27610	COG0583	DNA-binding transcription factor activity
JVX96_27615	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_27625	COG1960	acyl-CoA dehydrogenase activity
JVX96_27635	COG1024	Enoyl-CoA hydratase
JVX96_27655	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
JVX96_27660	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_27665	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_27685	COG0596	Alpha beta hydrolase
JVX96_27695	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_27815	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX96_27895	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_27900	COG1126	abc transporter atp-binding protein
JVX96_27915	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX96_27920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX96_27925	COG0765	amino acid transport
JVX96_27950	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JVX96_27970	COG0411	ABC transporter
JVX96_27990	COG0583	DNA-binding transcription factor activity
JVX96_28005	COG2267	carboxylic ester hydrolase activity
JVX96_28015	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_28020	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_28030	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_28045	COG0583	DNA-binding transcription factor activity
JVX96_28070	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX96_28085	COG3706	GGDEF domain
JVX96_28085	COG4251	negative regulation of phosphorylation
JVX96_28085	COG5001	Diguanylate cyclase
JVX96_28085	COG2203	Gaf domain
JVX96_28090	COG1414	Transcriptional regulator
JVX96_28110	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JVX96_28115	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX96_28135	COG3386	PFAM SMP-30 Gluconolaconase
JVX96_28155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_28170	COG2205	protein histidine kinase activity
JVX96_28175	COG0745	RESPONSE REGULATOR receiver
JVX96_28205	COG0747	negative chemotaxis
JVX96_28220	COG0601	transmembrane transport
JVX96_28225	COG2072	flavoprotein involved in K transport
JVX96_28250	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX96_28260	COG0842	Transport permease protein
JVX96_28265	COG0842	Transport permease protein
JVX96_28265	COG1129	ABC transporter
JVX96_28270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_28295	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JVX96_28330	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JVX96_28385	COG0071	Belongs to the small heat shock protein (HSP20) family
JVX96_28400	COG3162	membrane
JVX96_28425	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JVX96_28450	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_28460	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX96_28465	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JVX96_28490	COG0589	response to stress
JVX96_28510	COG3038	cytochrome b561
JVX96_28530	COG1063	alcohol dehydrogenase
JVX96_28560	COG0640	Transcriptional regulator
JVX96_28590	COG2823	Periplasmic or secreted lipoprotein
JVX96_28595	COG2201	protein-glutamate methylesterase activity
JVX96_28610	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JVX96_28630	COG4191	Histidine kinase
JVX96_28630	COG0784	Response regulator, receiver
JVX96_28635	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JVX96_28640	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JVX96_28650	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_28665	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JVX96_28675	COG4716	Myosin-crossreactive antigen
JVX96_28715	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JVX96_28750	COG3278	Belongs to the heme-copper respiratory oxidase family
JVX96_28760	COG2217	Heavy metal translocating P-type atpase
JVX96_28785	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JVX96_28790	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JVX96_28795	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JVX96_28800	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_28810	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_28825	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX96_28830	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX96_28835	COG2172	sigma factor antagonist activity
JVX96_28845	COG0784	Response regulator, receiver
JVX96_28845	COG2205	protein histidine kinase activity
JVX96_28850	COG5002	protein histidine kinase activity
JVX96_28850	COG2198	Histidine kinase
JVX96_28850	COG0784	Response regulator, receiver
JVX96_28855	COG0028	Belongs to the TPP enzyme family
JVX96_28900	COG1201	RNA secondary structure unwinding
JVX96_28905	COG1285	pathogenesis
JVX96_28915	COG0583	DNA-binding transcription factor activity
JVX96_28920	COG4804	nuclease activity
JVX96_28955	COG0028	Belongs to the TPP enzyme family
JVX96_28965	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JVX96_28980	COG0583	DNA-binding transcription factor activity
JVX96_29000	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_29010	COG2271	Major facilitator Superfamily
JVX96_29085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX96_29100	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JVX96_29115	COG1595	DNA-templated transcription, initiation
JVX96_29120	COG2366	antibiotic biosynthetic process
JVX96_29140	COG0840	transmembrane signaling receptor activity
JVX96_29145	COG2197	response regulator
JVX96_29150	COG2205	protein histidine kinase activity
JVX96_29160	COG1053	succinate dehydrogenase
JVX96_29180	COG0066	3-isopropylmalate dehydratase activity
JVX96_29185	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JVX96_29215	COG0683	leucine binding
JVX96_29225	COG3391	amine dehydrogenase activity
JVX96_29240	COG1301	dicarboxylic acid transport
JVX96_29275	COG0384	phenazine biosynthesis protein PhzF
JVX96_29280	COG1605	Chorismate mutase
JVX96_29280	COG0077	Prephenate dehydratase
JVX96_29300	COG2003	Belongs to the UPF0758 family
JVX96_29310	COG1396	sequence-specific DNA binding
JVX96_29330	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_29340	COG0583	DNA-binding transcription factor activity
JVX96_29345	COG1960	acyl-CoA dehydrogenase activity
JVX96_29355	COG0596	Alpha beta hydrolase
JVX96_29400	COG2309	aminopeptidase activity
JVX96_29405	COG1335	isochorismatase
JVX96_29415	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_29430	COG3842	ATPase activity
JVX96_29435	COG2223	nitrite transmembrane transporter activity
JVX96_29440	COG0583	DNA-binding transcription factor activity
JVX96_29465	COG1024	Enoyl-CoA hydratase
JVX96_29475	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_29480	COG0183	Belongs to the thiolase family
JVX96_29500	COG2207	Transcriptional regulator
JVX96_29510	COG1289	transmembrane transporter activity
JVX96_29520	COG1566	PFAM secretion protein HlyD family protein
JVX96_29530	COG0583	DNA-binding transcription factor activity
JVX96_29545	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_29560	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_29590	COG3246	L-lysine catabolic process to acetate
JVX96_29595	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_29600	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JVX96_29605	COG2272	Belongs to the type-B carboxylesterase lipase family
JVX96_29625	COG1609	Transcriptional regulator
JVX96_29630	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX96_29635	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JVX96_29645	COG1850	ribulose-bisphosphate carboxylase activity
JVX96_29670	COG2205	protein histidine kinase activity
JVX96_29710	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX96_29715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_29790	COG1191	sigma factor activity
JVX96_29820	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JVX96_29835	COG1157	protein secretion by the type III secretion system
JVX96_29855	COG1677	Flagellar hook-basal body complex protein FliE
JVX96_29860	COG1558	bacterial-type flagellum-dependent cell motility
JVX96_29870	COG1706	bacterial-type flagellum-dependent cell motility
JVX96_29875	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JVX96_29885	COG4786	Flagellar basal body rod
JVX96_29890	COG4786	Flagellar basal body rod
JVX96_29895	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX96_29900	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX96_29905	COG1684	flagellar biosynthetic protein fliR
JVX96_29910	COG1987	bacterial-type flagellum assembly
JVX96_29960	COG1484	DNA-dependent DNA replication
JVX96_29970	COG2963	transposase activity
JVX96_29995	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JVX96_29995	COG0512	Glutamine amidotransferase of anthranilate synthase
JVX96_30005	COG3916	Acyl-homoserine-lactone synthase
JVX96_30010	COG2197	response regulator
JVX96_30045	COG3451	type IV secretory pathway VirB4
JVX96_30055	COG3704	protein secretion by the type IV secretion system
JVX96_30060	COG3736	Type IV secretory pathway, component VirB8
JVX96_30065	COG3504	Conjugal transfer protein
JVX96_30100	COG0243	molybdopterin cofactor binding
JVX96_30105	COG0783	Belongs to the Dps family
JVX96_30140	COG0402	S-adenosylhomocysteine deaminase activity
JVX96_30150	COG0583	DNA-binding transcription factor activity
JVX96_30160	COG2814	Major facilitator Superfamily
JVX96_30200	COG1902	pentaerythritol trinitrate reductase activity
JVX96_30205	COG2080	2 iron, 2 sulfur cluster binding
JVX96_30210	COG2010	Cytochrome c
JVX96_30210	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JVX96_30220	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_30245	COG3321	synthase
JVX96_30245	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_30245	COG0604	alcohol dehydrogenase
JVX96_30270	COG1522	sequence-specific DNA binding
JVX96_30275	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX96_30280	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX96_30300	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_30305	COG4166	transmembrane transport
JVX96_30310	COG0601	transmembrane transport
JVX96_30315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_30325	COG0473	3-isopropylmalate dehydrogenase activity
JVX96_30330	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_30345	COG2079	MmgE PrpD family protein
JVX96_30350	COG0045	succinate-CoA ligase (ADP-forming) activity
JVX96_30350	COG1042	CoA-binding domain protein
JVX96_30350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX96_30355	COG1024	Enoyl-CoA hydratase
JVX96_30375	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX96_30385	COG2030	dehydratase
JVX96_30385	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_30390	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_30395	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JVX96_30400	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JVX96_30410	COG1024	Enoyl-CoA hydratase
JVX96_30430	COG1414	Transcriptional regulator
JVX96_30435	COG1960	acyl-CoA dehydrogenase activity
JVX96_30440	COG1042	CoA-binding domain protein
JVX96_30440	COG0045	succinate-CoA ligase (ADP-forming) activity
JVX96_30440	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX96_30465	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_30480	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_30495	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_30520	COG0583	DNA-binding transcription factor activity
JVX96_30555	COG3237	CsbD-like
JVX96_30570	COG0443	Heat shock 70 kDa protein
JVX96_30605	COG0514	ATP-dependent DNA helicase (RecQ)
JVX96_30615	COG0702	epimerase
JVX96_30620	COG0583	DNA-binding transcription factor activity
JVX96_30660	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_30685	COG0243	molybdopterin cofactor binding
JVX96_30695	COG2080	2 iron, 2 sulfur cluster binding
JVX96_30700	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JVX96_30705	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JVX96_30740	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JVX96_30755	COG4171	peptide transport system, permease
JVX96_30760	COG0601	transmembrane transport
JVX96_30790	COG1116	anion transmembrane transporter activity
JVX96_30805	COG1605	Chorismate mutase
JVX96_30810	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_30830	COG1192	Involved in chromosome partitioning
JVX96_30865	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_30880	COG0625	glutathione transferase activity
JVX96_30890	COG0028	Belongs to the TPP enzyme family
JVX96_30895	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_30915	COG2267	carboxylic ester hydrolase activity
JVX96_30925	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_30970	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_30995	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JVX96_31005	COG2205	protein histidine kinase activity
JVX96_31010	COG0745	RESPONSE REGULATOR receiver
JVX96_31030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX96_31035	COG0577	efflux transmembrane transporter activity
JVX96_31035	COG1136	(ABC) transporter
JVX96_31050	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JVX96_31060	COG1686	Belongs to the peptidase S11 family
JVX96_31100	COG1012	belongs to the aldehyde dehydrogenase family
JVX96_31115	COG1840	ABC-type Fe3 transport system, periplasmic component
JVX96_31120	COG3842	ATPase activity
JVX96_31135	COG0417	DNA replication proofreading
JVX96_31140	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JVX96_31145	COG0768	penicillin binding
JVX96_31150	COG2814	Major facilitator Superfamily
JVX96_31175	COG3829	transcription factor binding
JVX96_31185	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_31195	COG0431	NADPH-dependent FMN reductase
JVX96_31215	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX96_31240	COG3046	protein related to deoxyribodipyrimidine photolyase
JVX96_31250	COG2814	Major facilitator Superfamily
JVX96_31280	COG3181	Tripartite tricarboxylate transporter family receptor
JVX96_31315	COG1024	Enoyl-CoA hydratase
JVX96_31335	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
JVX96_31370	COG0277	FAD linked oxidase domain protein
JVX96_31375	COG1522	sequence-specific DNA binding
JVX96_31390	COG0251	oxidation-reduction process
JVX96_31435	COG2826	transposase and inactivated derivatives, IS30 family
JVX96_31450	COG0559	Belongs to the binding-protein-dependent transport system permease family
JVX96_31490	COG0154	amidase activity
JVX96_31500	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_31510	COG0596	Alpha beta hydrolase
JVX96_31525	COG1764	response to oxidative stress
JVX96_31535	COG2133	pyrroloquinoline quinone binding
JVX96_31550	COG0791	NLP P60 protein
JVX96_31565	COG1966	Carbon starvation protein
JVX96_31570	COG2879	small protein
JVX96_31590	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_31595	COG1960	acyl-CoA dehydrogenase activity
JVX96_31610	COG3040	lipid binding
JVX96_31635	COG0583	DNA-binding transcription factor activity
JVX96_31650	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX96_31660	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX96_31690	COG2813	Specifically methylates the guanine in position
JVX96_31720	COG0829	nickel cation binding
JVX96_31730	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_31740	COG5001	Diguanylate cyclase
JVX96_31740	COG3300	MHYT domain
JVX96_31745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_31765	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JVX96_31770	COG1733	regulation of RNA biosynthetic process
JVX96_31800	COG0745	RESPONSE REGULATOR receiver
JVX96_31805	COG0642	Histidine kinase
JVX96_31815	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_31820	COG1116	anion transmembrane transporter activity
JVX96_31830	COG0281	malic enzyme
JVX96_31830	COG0280	phosphate acetyltransferase
JVX96_31840	COG2084	Dehydrogenase
JVX96_31845	COG3622	Belongs to the hyi family
JVX96_31850	COG3960	tartronate-semialdehyde synthase activity
JVX96_31855	COG0583	DNA-binding transcription factor activity
JVX96_31870	COG0628	permease
JVX96_31880	COG1301	dicarboxylic acid transport
JVX96_31900	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JVX96_31915	COG2186	Transcriptional regulator
JVX96_31920	COG2351	hydroxyisourate hydrolase activity
JVX96_31955	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JVX96_31975	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JVX96_32030	COG0730	response to heat
JVX96_32040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JVX96_32050	COG2252	PERMEase
JVX96_32055	COG3845	ABC transporter
JVX96_32075	COG0515	serine threonine protein kinase
JVX96_32090	COG1944	ATP diphosphatase activity
JVX96_32120	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX96_32125	COG1126	abc transporter atp-binding protein
JVX96_32130	COG0765	amino acid transport
JVX96_32145	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JVX96_32150	COG2814	Major facilitator Superfamily
JVX96_32155	COG0583	DNA-binding transcription factor activity
JVX96_32160	COG4977	sequence-specific DNA binding
JVX96_32170	COG0154	amidase activity
JVX96_32225	COG0477	Major facilitator Superfamily
JVX96_32235	COG0674	pyruvate-flavodoxin oxidoreductase activity
JVX96_32235	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JVX96_32250	COG3265	gluconokinase activity
JVX96_32260	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JVX96_32265	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_32270	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX96_32295	COG0583	DNA-binding transcription factor activity
JVX96_32310	COG4566	intracellular signal transduction
JVX96_32325	COG0583	DNA-binding transcription factor activity
JVX96_32330	COG2814	Major facilitator Superfamily
JVX96_32365	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_32380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_32390	COG2186	Transcriptional regulator
JVX96_32415	COG2186	Transcriptional regulator
JVX96_32420	COG1960	acyl-CoA dehydrogenase activity
JVX96_32425	COG2186	Transcriptional regulator
JVX96_32430	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JVX96_32435	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JVX96_32460	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_32465	COG0318	PFAM AMP-dependent synthetase and ligase
JVX96_32470	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32485	COG1024	Enoyl-CoA hydratase
JVX96_32490	COG2030	dehydratase
JVX96_32495	COG0604	alcohol dehydrogenase
JVX96_32495	COG3321	synthase
JVX96_32525	COG1960	acyl-CoA dehydrogenase activity
JVX96_32530	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32545	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32560	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX96_32565	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32575	COG1024	Enoyl-CoA hydratase
JVX96_32585	COG1024	Enoyl-CoA hydratase
JVX96_32585	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX96_32590	COG0183	Belongs to the thiolase family
JVX96_32595	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32595	COG3321	synthase
JVX96_32595	COG0604	alcohol dehydrogenase
JVX96_32630	COG1024	Enoyl-CoA hydratase
JVX96_32635	COG1960	acyl-CoA dehydrogenase activity
JVX96_32640	COG1960	acyl-CoA dehydrogenase activity
JVX96_32645	COG0402	S-adenosylhomocysteine deaminase activity
JVX96_32650	COG0717	Belongs to the dCTP deaminase family
JVX96_32655	COG2321	neutral zinc metallopeptidase
JVX96_32660	COG0513	Belongs to the DEAD box helicase family
JVX96_32680	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_32685	COG1960	acyl-CoA dehydrogenase activity
JVX96_32695	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX96_32705	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX96_32730	COG2207	Transcriptional regulator
JVX96_32745	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JVX96_32750	COG1253	flavin adenine dinucleotide binding
JVX96_32760	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JVX96_32765	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JVX96_32770	COG5002	protein histidine kinase activity
JVX96_32770	COG5001	Diguanylate cyclase
JVX96_32770	COG3447	MASE1 domain protein
JVX96_32790	COG0583	DNA-binding transcription factor activity
JVX96_32820	COG1228	amidohydrolase
JVX96_32825	COG4608	Belongs to the ABC transporter superfamily
JVX96_32830	COG0444	Belongs to the ABC transporter superfamily
JVX96_32835	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX96_32840	COG0601	transmembrane transport
JVX96_32860	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX96_32865	COG4521	taurine ABC transporter
JVX96_32870	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JVX96_32875	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX96_32880	COG0583	DNA-binding transcription factor activity
JVX96_32885	COG0583	DNA-binding transcription factor activity
JVX96_32890	COG0596	Alpha beta hydrolase
JVX96_32895	COG1028	Short-chain dehydrogenase reductase Sdr
JVX96_32905	COG5002	protein histidine kinase activity
JVX96_32915	COG0745	RESPONSE REGULATOR receiver
JVX96_32925	COG5295	Hep Hag repeat protein