locus-tag class description RA8CHR_00001 PF08299 Bacterial dnaA protein helix-turn-helix RA8CHR_00001 PF11638 DnaA N-terminal domain RA8CHR_00001 PF00308 Bacterial dnaA protein RA8CHR_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain RA8CHR_00002 PF02767 DNA polymerase III beta subunit, central domain RA8CHR_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain RA8CHR_00003 PF01751 Toprim domain RA8CHR_00003 PF00204 DNA gyrase B RA8CHR_00003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00003 PF00986 DNA gyrase B subunit, carboxyl terminus RA8CHR_00003 PF18053 DNA gyrase B subunit insert domain RA8CHR_00006 PF00149 Calcineurin-like phosphoesterase RA8CHR_00009 PF09411 Lipid A 3-O-deacylase (PagL) RA8CHR_00012 PF03706 Lysylphosphatidylglycerol synthase TM region RA8CHR_00013 PF13091 PLD-like domain RA8CHR_00014 PF03372 Endonuclease/Exonuclease/phosphatase family RA8CHR_00018 PF05726 Pirin C-terminal cupin domain RA8CHR_00018 PF02678 Pirin RA8CHR_00020 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00021 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00023 PF17912 MalK OB fold domain RA8CHR_00023 PF00005 ABC transporter RA8CHR_00024 PF00912 Transglycosylase RA8CHR_00028 PF06123 Inner membrane protein CreD RA8CHR_00029 PF17092 Penicillin-binding protein OB-like domain RA8CHR_00029 PF00912 Transglycosylase RA8CHR_00029 PF00905 Penicillin binding protein transpeptidase domain RA8CHR_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00030 PF00672 HAMP domain RA8CHR_00030 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00031 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00031 PF00072 Response regulator receiver domain RA8CHR_00034 PF00403 Heavy-metal-associated domain RA8CHR_00035 PF00072 Response regulator receiver domain RA8CHR_00035 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00036 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00037 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_00038 PF06779 Uncharacterised MFS-type transporter YbfB RA8CHR_00039 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_00039 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_00040 PF07043 Protein of unknown function (DUF1328) RA8CHR_00042 PF13932 GidA associated domain RA8CHR_00042 PF01134 Glucose inhibited division protein A RA8CHR_00043 PF02527 rRNA small subunit methyltransferase G RA8CHR_00044 PF01810 LysE type translocator RA8CHR_00045 PF13614 AAA domain RA8CHR_00047 PF02195 ParB-like nuclease domain RA8CHR_00047 PF17762 HTH domain found in ParB protein RA8CHR_00049 PF01565 FAD binding domain RA8CHR_00049 PF02913 FAD linked oxidases, C-terminal domain RA8CHR_00050 PF01923 Cobalamin adenosyltransferase RA8CHR_00058 PF03776 Septum formation topological specificity factor MinE RA8CHR_00059 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RA8CHR_00060 PF03775 Septum formation inhibitor MinC, C-terminal domain RA8CHR_00060 PF05209 Septum formation inhibitor MinC, N-terminal domain RA8CHR_00062 PF00860 Permease family RA8CHR_00063 PF03061 Thioesterase superfamily RA8CHR_00065 PF03466 LysR substrate binding domain RA8CHR_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00066 PF00202 Aminotransferase class-III RA8CHR_00067 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00069 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_00074 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00075 PF01425 Amidase RA8CHR_00076 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_00079 PF09339 IclR helix-turn-helix domain RA8CHR_00079 PF01614 Bacterial transcriptional regulator RA8CHR_00082 PF04829 Pre-toxin domain with VENN motif RA8CHR_00082 PF05860 haemagglutination activity domain RA8CHR_00082 PF13332 Hemagglutinin repeat RA8CHR_00082 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_00084 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00084 PF00501 AMP-binding enzyme RA8CHR_00085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_00085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_00086 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00087 PF05853 beta-keto acid cleavage enzyme RA8CHR_00091 PF00199 Catalase RA8CHR_00091 PF06628 Catalase-related immune-responsive RA8CHR_00091 PF18011 C-terminal domain found in long catalases RA8CHR_00092 PF03466 LysR substrate binding domain RA8CHR_00092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00093 PF00202 Aminotransferase class-III RA8CHR_00094 PF00072 Response regulator receiver domain RA8CHR_00094 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_00096 PF13609 Gram-negative porin RA8CHR_00097 PF00501 AMP-binding enzyme RA8CHR_00097 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00098 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_00098 PF00107 Zinc-binding dehydrogenase RA8CHR_00099 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00100 PF05853 beta-keto acid cleavage enzyme RA8CHR_00101 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_00103 PF00860 Permease family RA8CHR_00105 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00106 PF03466 LysR substrate binding domain RA8CHR_00106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00107 PF00462 Glutaredoxin RA8CHR_00108 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_00109 PF14338 Mrr N-terminal domain RA8CHR_00109 PF04471 Restriction endonuclease RA8CHR_00111 PF13391 HNH endonuclease RA8CHR_00112 PF00005 ABC transporter RA8CHR_00113 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00113 PF00005 ABC transporter RA8CHR_00115 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00117 PF12826 Helix-hairpin-helix motif RA8CHR_00117 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RA8CHR_00117 PF03120 NAD-dependent DNA ligase OB-fold domain RA8CHR_00117 PF01653 NAD-dependent DNA ligase adenylation domain RA8CHR_00117 PF00533 BRCA1 C Terminus (BRCT) domain RA8CHR_00118 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00118 PF00501 AMP-binding enzyme RA8CHR_00121 PF01202 Shikimate kinase RA8CHR_00127 PF00892 EamA-like transporter family RA8CHR_00130 PF03466 LysR substrate binding domain RA8CHR_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00132 PF07690 Major Facilitator Superfamily RA8CHR_00133 PF01627 Hpt domain RA8CHR_00133 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00133 PF00989 PAS fold RA8CHR_00133 PF00072 Response regulator receiver domain RA8CHR_00133 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_00134 PF00561 alpha/beta hydrolase fold RA8CHR_00135 PF00684 DnaJ central domain RA8CHR_00135 PF01556 DnaJ C terminal domain RA8CHR_00135 PF00226 DnaJ domain RA8CHR_00139 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00140 PF00501 AMP-binding enzyme RA8CHR_00140 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00142 PF00072 Response regulator receiver domain RA8CHR_00142 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00145 PF00574 Clp protease RA8CHR_00146 PF03960 ArsC family RA8CHR_00149 PF10503 Esterase PHB depolymerase RA8CHR_00150 PF05922 Peptidase inhibitor I9 RA8CHR_00150 PF00082 Subtilase family RA8CHR_00155 PF08402 TOBE domain RA8CHR_00155 PF00005 ABC transporter RA8CHR_00156 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00157 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00160 PF01042 Endoribonuclease L-PSP RA8CHR_00162 PF13416 Bacterial extracellular solute-binding protein RA8CHR_00163 PF00561 alpha/beta hydrolase fold RA8CHR_00165 PF01979 Amidohydrolase family RA8CHR_00166 PF00970 Oxidoreductase FAD-binding domain RA8CHR_00166 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_00167 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00168 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00170 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RA8CHR_00170 PF03900 Porphobilinogen deaminase, C-terminal domain RA8CHR_00174 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00175 PF07238 PilZ domain RA8CHR_00175 PF00535 Glycosyl transferase family 2 RA8CHR_00175 PF03552 Cellulose synthase RA8CHR_00176 PF03170 Bacterial cellulose synthase subunit RA8CHR_00177 PF01270 Glycosyl hydrolases family 8 RA8CHR_00178 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) RA8CHR_00179 PF00877 NlpC/P60 family RA8CHR_00180 PF03466 LysR substrate binding domain RA8CHR_00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00181 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00184 PF03737 Aldolase/RraA RA8CHR_00186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00186 PF03466 LysR substrate binding domain RA8CHR_00187 PF00107 Zinc-binding dehydrogenase RA8CHR_00187 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_00188 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_00188 PF13380 CoA binding domain RA8CHR_00189 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00190 PF00005 ABC transporter RA8CHR_00191 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00195 PF01068 ATP dependent DNA ligase domain RA8CHR_00195 PF13298 DNA polymerase Ligase (LigD) RA8CHR_00195 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_00197 PF02735 Ku70/Ku80 beta-barrel domain RA8CHR_00206 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00212 PF02146 Sir2 family RA8CHR_00214 PF13091 PLD-like domain RA8CHR_00215 PF00027 Cyclic nucleotide-binding domain RA8CHR_00215 PF07885 Ion channel RA8CHR_00216 PF01734 Patatin-like phospholipase RA8CHR_00218 PF08000 Bacterial PH domain RA8CHR_00219 PF04909 Amidohydrolase RA8CHR_00220 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00221 PF01527 Transposase RA8CHR_00222 PF13276 HTH-like domain RA8CHR_00222 PF13683 Integrase core domain RA8CHR_00223 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00224 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00225 PF01321 Creatinase/Prolidase N-terminal domain RA8CHR_00225 PF00557 Metallopeptidase family M24 RA8CHR_00226 PF01212 Beta-eliminating lyase RA8CHR_00227 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00227 PF03466 LysR substrate binding domain RA8CHR_00229 PF00675 Insulinase (Peptidase family M16) RA8CHR_00229 PF05193 Peptidase M16 inactive domain RA8CHR_00231 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_00232 PF13462 Thioredoxin RA8CHR_00232 PF06965 Na+/H+ antiporter 1 RA8CHR_00234 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_00234 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_00234 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_00239 PF10091 Putative glucoamylase RA8CHR_00239 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain RA8CHR_00239 PF06165 Glycosyltransferase family 36 RA8CHR_00245 PF01965 DJ-1/PfpI family RA8CHR_00245 PF12833 Helix-turn-helix domain RA8CHR_00246 PF00106 short chain dehydrogenase RA8CHR_00247 PF00892 EamA-like transporter family RA8CHR_00248 PF03466 LysR substrate binding domain RA8CHR_00248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00251 PF03466 LysR substrate binding domain RA8CHR_00251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00252 PF00037 4Fe-4S binding domain RA8CHR_00253 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00254 PF02515 CoA-transferase family III RA8CHR_00256 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00257 PF00005 ABC transporter RA8CHR_00260 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_00260 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_00263 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00263 PF00501 AMP-binding enzyme RA8CHR_00264 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RA8CHR_00267 PF03466 LysR substrate binding domain RA8CHR_00267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00269 PF16123 Hydroxyacylglutathione hydrolase C-terminus RA8CHR_00269 PF00753 Metallo-beta-lactamase superfamily RA8CHR_00270 PF00578 AhpC/TSA family RA8CHR_00270 PF10417 C-terminal domain of 1-Cys peroxiredoxin RA8CHR_00272 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00272 PF03466 LysR substrate binding domain RA8CHR_00273 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_00273 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_00273 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_00274 PF02515 CoA-transferase family III RA8CHR_00277 PF00155 Aminotransferase class I and II RA8CHR_00277 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00278 PF00106 short chain dehydrogenase RA8CHR_00280 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00282 PF00698 Acyl transferase domain RA8CHR_00282 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_00282 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_00282 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_00282 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_00282 PF00550 Phosphopantetheine attachment site RA8CHR_00282 PF14765 Polyketide synthase dehydratase RA8CHR_00282 PF08659 KR domain RA8CHR_00283 PF05853 beta-keto acid cleavage enzyme RA8CHR_00285 PF00775 Dioxygenase RA8CHR_00285 PF04444 Catechol dioxygenase N terminus RA8CHR_00286 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_00287 PF00069 Protein kinase domain RA8CHR_00291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00291 PF03466 LysR substrate binding domain RA8CHR_00292 PF04960 Glutaminase RA8CHR_00293 PF00892 EamA-like transporter family RA8CHR_00295 PF01979 Amidohydrolase family RA8CHR_00297 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00298 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00298 PF07702 UTRA domain RA8CHR_00299 PF01613 Flavin reductase like domain RA8CHR_00300 PF07670 Nucleoside recognition RA8CHR_00301 PF16655 PhoD-like phosphatase, N-terminal domain RA8CHR_00301 PF09423 PhoD-like phosphatase RA8CHR_00303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00303 PF03466 LysR substrate binding domain RA8CHR_00305 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RA8CHR_00305 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RA8CHR_00307 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_00307 PF13291 ACT domain RA8CHR_00308 PF17862 AAA+ lid domain RA8CHR_00308 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_00308 PF01434 Peptidase family M41 RA8CHR_00311 PF16124 RecQ zinc-binding RA8CHR_00311 PF00271 Helicase conserved C-terminal domain RA8CHR_00311 PF09382 RQC domain RA8CHR_00311 PF00570 HRDC domain RA8CHR_00311 PF00270 DEAD/DEAH box helicase RA8CHR_00316 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00317 PF00005 ABC transporter RA8CHR_00318 PF07702 UTRA domain RA8CHR_00318 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00319 PF00221 Aromatic amino acid lyase RA8CHR_00319 PF00221 Aromatic amino acid lyase RA8CHR_00320 PF01175 Urocanase Rossmann-like domain RA8CHR_00320 PF17392 Urocanase C-terminal domain RA8CHR_00320 PF17391 Urocanase N-terminal domain RA8CHR_00321 PF02423 Ornithine cyclodeaminase/mu-crystallin family RA8CHR_00323 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00324 PF05962 HutD RA8CHR_00325 PF01979 Amidohydrolase family RA8CHR_00331 PF02310 B12 binding domain RA8CHR_00331 PF02607 B12 binding domain RA8CHR_00331 PF00809 Pterin binding enzyme RA8CHR_00331 PF02574 Homocysteine S-methyltransferase RA8CHR_00331 PF02965 Vitamin B12 dependent methionine synthase, activation domain RA8CHR_00333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00333 PF03466 LysR substrate binding domain RA8CHR_00335 PF02965 Vitamin B12 dependent methionine synthase, activation domain RA8CHR_00335 PF00809 Pterin binding enzyme RA8CHR_00335 PF02574 Homocysteine S-methyltransferase RA8CHR_00335 PF02310 B12 binding domain RA8CHR_00335 PF02607 B12 binding domain RA8CHR_00339 PF00498 FHA domain RA8CHR_00339 PF00005 ABC transporter RA8CHR_00339 PF01061 ABC-2 type transporter RA8CHR_00340 PF01979 Amidohydrolase family RA8CHR_00341 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_00341 PF17938 Tetracyclin repressor-like, C-terminal domain RA8CHR_00342 PF00970 Oxidoreductase FAD-binding domain RA8CHR_00342 PF00175 Oxidoreductase NAD-binding domain RA8CHR_00343 PF00037 4Fe-4S binding domain RA8CHR_00348 PF13458 Periplasmic binding protein RA8CHR_00351 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00351 PF00005 ABC transporter RA8CHR_00352 PF00005 ABC transporter RA8CHR_00353 PF00857 Isochorismatase family RA8CHR_00354 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_00354 PF01799 [2Fe-2S] binding domain RA8CHR_00355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_00355 PF00034 Cytochrome c RA8CHR_00355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA8CHR_00358 PF00355 Rieske [2Fe-2S] domain RA8CHR_00359 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00361 PF01078 Magnesium chelatase, subunit ChlI RA8CHR_00361 PF13335 Magnesium chelatase, subunit ChlI C-terminal RA8CHR_00363 PF00543 Nitrogen regulatory protein P-II RA8CHR_00364 PF00909 Ammonium Transporter Family RA8CHR_00365 PF08450 SMP-30/Gluconolactonase/LRE-like region RA8CHR_00366 PF01565 FAD binding domain RA8CHR_00367 PF13183 4Fe-4S dicluster domain RA8CHR_00367 PF02754 Cysteine-rich domain RA8CHR_00370 PF00255 Glutathione peroxidase RA8CHR_00372 PF07690 Major Facilitator Superfamily RA8CHR_00373 PF00842 Alanine racemase, C-terminal domain RA8CHR_00373 PF01168 Alanine racemase, N-terminal domain RA8CHR_00375 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_00375 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_00376 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_00377 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00378 PF00920 Dehydratase family RA8CHR_00379 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8CHR_00380 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00382 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RA8CHR_00383 PF00171 Aldehyde dehydrogenase family RA8CHR_00384 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00385 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00386 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00387 PF01047 MarR family RA8CHR_00388 PF18073 Rubredoxin metal binding domain RA8CHR_00390 PF04381 Putative exonuclease, RdgC RA8CHR_00391 PF01063 Amino-transferase class IV RA8CHR_00394 PF12951 Passenger-associated-transport-repeat RA8CHR_00396 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00396 PF00672 HAMP domain RA8CHR_00397 PF00072 Response regulator receiver domain RA8CHR_00397 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00398 PF01266 FAD dependent oxidoreductase RA8CHR_00400 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_00400 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_00403 PF07690 Major Facilitator Superfamily RA8CHR_00404 PF01435 Peptidase family M48 RA8CHR_00405 PF00106 short chain dehydrogenase RA8CHR_00406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00406 PF03466 LysR substrate binding domain RA8CHR_00407 PF00857 Isochorismatase family RA8CHR_00409 PF07969 Amidohydrolase family RA8CHR_00411 PF07690 Major Facilitator Superfamily RA8CHR_00412 PF01425 Amidase RA8CHR_00413 PF09084 NMT1/THI5 like RA8CHR_00414 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00415 PF00005 ABC transporter RA8CHR_00417 PF01425 Amidase RA8CHR_00422 PF00795 Carbon-nitrogen hydrolase RA8CHR_00423 PF00857 Isochorismatase family RA8CHR_00425 PF00857 Isochorismatase family RA8CHR_00426 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00426 PF07729 FCD domain RA8CHR_00427 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00428 PF01494 FAD binding domain RA8CHR_00429 PF03466 LysR substrate binding domain RA8CHR_00429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00430 PF03372 Endonuclease/Exonuclease/phosphatase family RA8CHR_00431 PF00156 Phosphoribosyl transferase domain RA8CHR_00433 PF02637 GatB domain RA8CHR_00433 PF02934 GatB/GatE catalytic domain RA8CHR_00434 PF01425 Amidase RA8CHR_00435 PF02686 Glu-tRNAGln amidotransferase C subunit RA8CHR_00439 PF00905 Penicillin binding protein transpeptidase domain RA8CHR_00439 PF03717 Penicillin-binding Protein dimerisation domain RA8CHR_00440 PF05199 GMC oxidoreductase RA8CHR_00440 PF00732 GMC oxidoreductase RA8CHR_00441 PF02405 Permease MlaE RA8CHR_00442 PF09383 NIL domain RA8CHR_00442 PF00005 ABC transporter RA8CHR_00446 PF01914 MarC family integral membrane protein RA8CHR_00448 PF01323 DSBA-like thioredoxin domain RA8CHR_00449 PF01738 Dienelactone hydrolase family RA8CHR_00451 PF03466 LysR substrate binding domain RA8CHR_00451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00453 PF01544 CorA-like Mg2+ transporter protein RA8CHR_00454 PF00490 Delta-aminolevulinic acid dehydratase RA8CHR_00458 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RA8CHR_00459 PF00768 D-alanyl-D-alanine carboxypeptidase RA8CHR_00459 PF07943 Penicillin-binding protein 5, C-terminal domain RA8CHR_00460 PF00164 Ribosomal protein S12/S23 RA8CHR_00461 PF00177 Ribosomal protein S7p/S5e RA8CHR_00462 PF03144 Elongation factor Tu domain 2 RA8CHR_00462 PF00009 Elongation factor Tu GTP binding domain RA8CHR_00462 PF03764 Elongation factor G, domain IV RA8CHR_00462 PF14492 Elongation Factor G, domain II RA8CHR_00462 PF00679 Elongation factor G C-terminus RA8CHR_00463 PF00009 Elongation factor Tu GTP binding domain RA8CHR_00463 PF03144 Elongation factor Tu domain 2 RA8CHR_00463 PF03143 Elongation factor Tu C-terminal domain RA8CHR_00464 PF00338 Ribosomal protein S10p/S20e RA8CHR_00467 PF00297 Ribosomal protein L3 RA8CHR_00468 PF00573 Ribosomal protein L4/L1 family RA8CHR_00469 PF00276 Ribosomal protein L23 RA8CHR_00470 PF03947 Ribosomal Proteins L2, C-terminal domain RA8CHR_00470 PF00181 Ribosomal Proteins L2, RNA binding domain RA8CHR_00471 PF00203 Ribosomal protein S19 RA8CHR_00472 PF00237 Ribosomal protein L22p/L17e RA8CHR_00473 PF00189 Ribosomal protein S3, C-terminal domain RA8CHR_00473 PF07650 KH domain RA8CHR_00474 PF00252 Ribosomal protein L16p/L10e RA8CHR_00475 PF00831 Ribosomal L29 protein RA8CHR_00476 PF00366 Ribosomal protein S17 RA8CHR_00477 PF08534 Redoxin RA8CHR_00478 PF00583 Acetyltransferase (GNAT) family RA8CHR_00480 PF01322 Cytochrome C' RA8CHR_00481 PF00578 AhpC/TSA family RA8CHR_00483 PF07690 Major Facilitator Superfamily RA8CHR_00485 PF00381 PTS HPr component phosphorylation site RA8CHR_00486 PF02896 PEP-utilising enzyme, TIM barrel domain RA8CHR_00486 PF00391 PEP-utilising enzyme, mobile domain RA8CHR_00486 PF05524 PEP-utilising enzyme, N-terminal RA8CHR_00489 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00489 PF00072 Response regulator receiver domain RA8CHR_00490 PF00360 Phytochrome region RA8CHR_00490 PF08446 PAS fold RA8CHR_00490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00490 PF01590 GAF domain RA8CHR_00491 PF00107 Zinc-binding dehydrogenase RA8CHR_00491 PF16884 N-terminal domain of oxidoreductase RA8CHR_00494 PF07702 UTRA domain RA8CHR_00494 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00495 PF10397 Adenylosuccinate lyase C-terminus RA8CHR_00495 PF00206 Lyase RA8CHR_00496 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00497 PF10415 Fumarase C C-terminus RA8CHR_00497 PF00206 Lyase RA8CHR_00498 PF03600 Citrate transporter RA8CHR_00499 PF00501 AMP-binding enzyme RA8CHR_00499 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00500 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RA8CHR_00500 PF04055 Radical SAM superfamily RA8CHR_00501 PF03099 Biotin/lipoate A/B protein ligase family RA8CHR_00502 PF01063 Amino-transferase class IV RA8CHR_00504 PF00119 ATP synthase A chain RA8CHR_00505 PF00137 ATP synthase subunit C RA8CHR_00506 PF00430 ATP synthase B/B' CF(0) RA8CHR_00507 PF00213 ATP synthase delta (OSCP) subunit RA8CHR_00508 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA8CHR_00508 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA8CHR_00508 PF00306 ATP synthase alpha/beta chain, C terminal domain RA8CHR_00509 PF00231 ATP synthase RA8CHR_00510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA8CHR_00510 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA8CHR_00511 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RA8CHR_00511 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RA8CHR_00512 PF00480 ROK family RA8CHR_00512 PF01047 MarR family RA8CHR_00513 PF00005 ABC transporter RA8CHR_00514 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00515 PF13407 Periplasmic binding protein domain RA8CHR_00516 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA8CHR_00516 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA8CHR_00522 PF00795 Carbon-nitrogen hydrolase RA8CHR_00522 PF02540 NAD synthase RA8CHR_00525 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_00525 PF04675 DNA ligase N terminus RA8CHR_00525 PF01068 ATP dependent DNA ligase domain RA8CHR_00526 PF04675 DNA ligase N terminus RA8CHR_00526 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_00526 PF01068 ATP dependent DNA ligase domain RA8CHR_00527 PF00271 Helicase conserved C-terminal domain RA8CHR_00527 PF08494 DEAD/H associated RA8CHR_00527 PF00270 DEAD/DEAH box helicase RA8CHR_00538 PF02321 Outer membrane efflux protein RA8CHR_00539 PF00873 AcrB/AcrD/AcrF family RA8CHR_00541 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_00541 PF00529 HlyD membrane-fusion protein of T1SS RA8CHR_00542 PF08361 MAATS-type transcriptional repressor, C-terminal region RA8CHR_00542 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_00544 PF00589 Phage integrase family RA8CHR_00544 PF13356 Arm DNA-binding domain RA8CHR_00554 PF02796 Helix-turn-helix domain of resolvase RA8CHR_00554 PF00239 Resolvase, N terminal domain RA8CHR_00555 PF01381 Helix-turn-helix RA8CHR_00573 PF00580 UvrD/REP helicase N-terminal domain RA8CHR_00573 PF13361 UvrD-like helicase C-terminal domain RA8CHR_00574 PF00271 Helicase conserved C-terminal domain RA8CHR_00574 PF00270 DEAD/DEAH box helicase RA8CHR_00574 PF09382 RQC domain RA8CHR_00574 PF00570 HRDC domain RA8CHR_00574 PF16124 RecQ zinc-binding RA8CHR_00585 PF02887 Pyruvate kinase, alpha/beta domain RA8CHR_00585 PF00224 Pyruvate kinase, barrel domain RA8CHR_00586 PF05161 MOFRL family RA8CHR_00586 PF13660 Domain of unknown function (DUF4147) RA8CHR_00587 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_00587 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_00588 PF07690 Major Facilitator Superfamily RA8CHR_00590 PF00709 Adenylosuccinate synthetase RA8CHR_00596 PF12833 Helix-turn-helix domain RA8CHR_00596 PF01965 DJ-1/PfpI family RA8CHR_00597 PF07690 Major Facilitator Superfamily RA8CHR_00597 PF00083 Sugar (and other) transporter RA8CHR_00599 PF00037 4Fe-4S binding domain RA8CHR_00599 PF11953 Domain of unknown function (DUF3470) RA8CHR_00601 PF08241 Methyltransferase domain RA8CHR_00604 PF08450 SMP-30/Gluconolactonase/LRE-like region RA8CHR_00606 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00606 PF03466 LysR substrate binding domain RA8CHR_00607 PF00171 Aldehyde dehydrogenase family RA8CHR_00608 PF13407 Periplasmic binding protein domain RA8CHR_00609 PF13407 Periplasmic binding protein domain RA8CHR_00610 PF00005 ABC transporter RA8CHR_00611 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00612 PF00005 ABC transporter RA8CHR_00613 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00614 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00615 PF00920 Dehydratase family RA8CHR_00616 PF00701 Dihydrodipicolinate synthetase family RA8CHR_00618 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA8CHR_00619 PF02021 Uncharacterised protein family UPF0102 RA8CHR_00620 PF13580 SIS domain RA8CHR_00622 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_00622 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_00623 PF00437 Type II/IV secretion system protein RA8CHR_00624 PF00437 Type II/IV secretion system protein RA8CHR_00625 PF01168 Alanine racemase, N-terminal domain RA8CHR_00626 PF01037 Lrp/AsnC ligand binding domain RA8CHR_00627 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RA8CHR_00627 PF00171 Aldehyde dehydrogenase family RA8CHR_00627 PF14850 DNA-binding domain of Proline dehydrogenase RA8CHR_00627 PF01619 Proline dehydrogenase RA8CHR_00628 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RA8CHR_00628 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA8CHR_00633 PF00491 Arginase family RA8CHR_00634 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00635 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_00636 PF00005 ABC transporter RA8CHR_00638 PF12867 DinB superfamily RA8CHR_00638 PF03781 Sulfatase-modifying factor enzyme 1 RA8CHR_00640 PF00586 AIR synthase related protein, N-terminal domain RA8CHR_00640 PF02769 AIR synthase related protein, C-terminal domain RA8CHR_00641 PF06974 Protein of unknown function (DUF1298) RA8CHR_00641 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RA8CHR_00644 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_00645 PF00561 alpha/beta hydrolase fold RA8CHR_00648 PF00175 Oxidoreductase NAD-binding domain RA8CHR_00648 PF00258 Flavodoxin RA8CHR_00648 PF00067 Cytochrome P450 RA8CHR_00648 PF00667 FAD binding domain RA8CHR_00649 PF13458 Periplasmic binding protein RA8CHR_00650 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_00651 PF00501 AMP-binding enzyme RA8CHR_00651 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00652 PF02785 Biotin carboxylase C-terminal domain RA8CHR_00652 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_00652 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_00655 PF04172 LrgB-like family RA8CHR_00656 PF03788 LrgA family RA8CHR_00657 PF01565 FAD binding domain RA8CHR_00657 PF02913 FAD linked oxidases, C-terminal domain RA8CHR_00658 PF00551 Formyl transferase RA8CHR_00659 PF00202 Aminotransferase class-III RA8CHR_00666 PF01494 FAD binding domain RA8CHR_00668 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00676 PF07687 Peptidase dimerisation domain RA8CHR_00676 PF01546 Peptidase family M20/M25/M40 RA8CHR_00677 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00678 PF03466 LysR substrate binding domain RA8CHR_00678 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00679 PF01266 FAD dependent oxidoreductase RA8CHR_00680 PF01266 FAD dependent oxidoreductase RA8CHR_00684 PF01569 PAP2 superfamily RA8CHR_00690 PF01702 Queuine tRNA-ribosyltransferase RA8CHR_00691 PF02547 Queuosine biosynthesis protein RA8CHR_00692 PF17191 RecG wedge domain RA8CHR_00692 PF00271 Helicase conserved C-terminal domain RA8CHR_00692 PF00270 DEAD/DEAH box helicase RA8CHR_00693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00693 PF03466 LysR substrate binding domain RA8CHR_00694 PF00210 Ferritin-like domain RA8CHR_00695 PF01040 UbiA prenyltransferase family RA8CHR_00696 PF03807 NADP oxidoreductase coenzyme F420-dependent RA8CHR_00696 PF14748 Pyrroline-5-carboxylate reductase dimerisation RA8CHR_00697 PF00238 Ribosomal protein L14p/L23e RA8CHR_00698 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RA8CHR_00698 PF00467 KOW motif RA8CHR_00699 PF00673 ribosomal L5P family C-terminus RA8CHR_00699 PF00281 Ribosomal protein L5 RA8CHR_00700 PF00253 Ribosomal protein S14p/S29e RA8CHR_00701 PF00410 Ribosomal protein S8 RA8CHR_00702 PF00347 Ribosomal protein L6 RA8CHR_00703 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RA8CHR_00704 PF03719 Ribosomal protein S5, C-terminal domain RA8CHR_00704 PF00333 Ribosomal protein S5, N-terminal domain RA8CHR_00705 PF00327 Ribosomal protein L30p/L7e RA8CHR_00706 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RA8CHR_00707 PF00344 SecY translocase RA8CHR_00708 PF01176 Translation initiation factor 1A / IF-1 RA8CHR_00709 PF00444 Ribosomal protein L36 RA8CHR_00710 PF00416 Ribosomal protein S13/S18 RA8CHR_00711 PF00411 Ribosomal protein S11 RA8CHR_00712 PF00163 Ribosomal protein S4/S9 N-terminal domain RA8CHR_00712 PF01479 S4 domain RA8CHR_00713 PF01000 RNA polymerase Rpb3/RpoA insert domain RA8CHR_00713 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RA8CHR_00713 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RA8CHR_00714 PF01196 Ribosomal protein L17 RA8CHR_00717 PF00501 AMP-binding enzyme RA8CHR_00717 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_00718 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_00718 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_00718 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_00719 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00721 PF01494 FAD binding domain RA8CHR_00726 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00727 PF03466 LysR substrate binding domain RA8CHR_00730 PF02779 Transketolase, pyrimidine binding domain RA8CHR_00730 PF02780 Transketolase, C-terminal domain RA8CHR_00731 PF00676 Dehydrogenase E1 component RA8CHR_00741 PF13407 Periplasmic binding protein domain RA8CHR_00742 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00743 PF00005 ABC transporter RA8CHR_00744 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00746 PF07969 Amidohydrolase family RA8CHR_00747 PF01965 DJ-1/PfpI family RA8CHR_00748 PF00501 AMP-binding enzyme RA8CHR_00748 PF14535 AMP-binding enzyme C-terminal domain RA8CHR_00749 PF00005 ABC transporter RA8CHR_00753 PF00005 ABC transporter RA8CHR_00753 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00754 PF00501 AMP-binding enzyme RA8CHR_00755 PF00027 Cyclic nucleotide-binding domain RA8CHR_00755 PF13545 Crp-like helix-turn-helix domain RA8CHR_00757 PF00106 short chain dehydrogenase RA8CHR_00758 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00763 PF03814 Potassium-transporting ATPase A subunit RA8CHR_00765 PF02669 K+-transporting ATPase, c chain RA8CHR_00766 PF13493 Domain of unknown function (DUF4118) RA8CHR_00766 PF13492 GAF domain RA8CHR_00766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00766 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00766 PF02702 Osmosensitive K+ channel His kinase sensor domain RA8CHR_00767 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00767 PF00072 Response regulator receiver domain RA8CHR_00769 PF00849 RNA pseudouridylate synthase RA8CHR_00769 PF01479 S4 domain RA8CHR_00770 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00770 PF00072 Response regulator receiver domain RA8CHR_00771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00771 PF08521 Two-component sensor kinase N-terminal RA8CHR_00771 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00784 PF00183 Hsp90 protein RA8CHR_00784 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00785 PF00067 Cytochrome P450 RA8CHR_00786 PF02515 CoA-transferase family III RA8CHR_00787 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00788 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_00788 PF18158 Adaptive response protein AidB N-terminal domain RA8CHR_00788 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_00789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00789 PF03466 LysR substrate binding domain RA8CHR_00790 PF01636 Phosphotransferase enzyme family RA8CHR_00792 PF02566 OsmC-like protein RA8CHR_00793 PF01047 MarR family RA8CHR_00795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_00795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_00796 PF02222 ATP-grasp domain RA8CHR_00797 PF07859 alpha/beta hydrolase fold RA8CHR_00801 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00803 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00803 PF00005 ABC transporter RA8CHR_00804 PF00005 ABC transporter RA8CHR_00805 PF00501 AMP-binding enzyme RA8CHR_00813 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_00813 PF00107 Zinc-binding dehydrogenase RA8CHR_00815 PF01145 SPFH domain / Band 7 family RA8CHR_00815 PF15975 Flotillin RA8CHR_00816 PF09370 Phosphoenolpyruvate hydrolase-like RA8CHR_00818 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00818 PF00005 ABC transporter RA8CHR_00822 PF01979 Amidohydrolase family RA8CHR_00823 PF01979 Amidohydrolase family RA8CHR_00824 PF12697 Alpha/beta hydrolase family RA8CHR_00825 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00827 PF07859 alpha/beta hydrolase fold RA8CHR_00828 PF07689 KaiB domain RA8CHR_00828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00830 PF00561 alpha/beta hydrolase fold RA8CHR_00831 PF00171 Aldehyde dehydrogenase family RA8CHR_00833 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_00834 PF07331 Tripartite tricarboxylate transporter TctB family RA8CHR_00835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_00835 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_00835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_00837 PF03309 Type III pantothenate kinase RA8CHR_00838 PF04972 BON domain RA8CHR_00838 PF01476 LysM domain RA8CHR_00840 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_00842 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_00842 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_00843 PF00756 Putative esterase RA8CHR_00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_00845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_00848 PF13091 PLD-like domain RA8CHR_00848 PF13396 Phospholipase_D-nuclease N-terminal RA8CHR_00849 PF01048 Phosphorylase superfamily RA8CHR_00849 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RA8CHR_00852 PF00067 Cytochrome P450 RA8CHR_00854 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_00855 PF03466 LysR substrate binding domain RA8CHR_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00856 PF00005 ABC transporter RA8CHR_00857 PF01061 ABC-2 type transporter RA8CHR_00858 PF04286 Protein of unknown function (DUF445) RA8CHR_00859 PF01546 Peptidase family M20/M25/M40 RA8CHR_00859 PF07687 Peptidase dimerisation domain RA8CHR_00860 PF07687 Peptidase dimerisation domain RA8CHR_00860 PF01546 Peptidase family M20/M25/M40 RA8CHR_00863 PF00384 Molybdopterin oxidoreductase RA8CHR_00863 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8CHR_00863 PF01568 Molydopterin dinucleotide binding domain RA8CHR_00864 PF00582 Universal stress protein family RA8CHR_00874 PF16363 GDP-mannose 4,6 dehydratase RA8CHR_00875 PF04321 RmlD substrate binding domain RA8CHR_00876 PF00483 Nucleotidyl transferase RA8CHR_00877 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RA8CHR_00878 PF08889 WbqC-like protein family RA8CHR_00879 PF00535 Glycosyl transferase family 2 RA8CHR_00880 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RA8CHR_00881 PF00398 Ribosomal RNA adenine dimethylase RA8CHR_00882 PF13649 Methyltransferase domain RA8CHR_00885 PF00892 EamA-like transporter family RA8CHR_00887 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8CHR_00888 PF08485 Polysaccharide biosynthesis protein C-terminal RA8CHR_00888 PF02719 Polysaccharide biosynthesis protein RA8CHR_00889 PF01370 NAD dependent epimerase/dehydratase family RA8CHR_00890 PF02350 UDP-N-acetylglucosamine 2-epimerase RA8CHR_00895 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_00896 PF00535 Glycosyl transferase family 2 RA8CHR_00897 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8CHR_00901 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8CHR_00903 PF05050 Methyltransferase FkbM domain RA8CHR_00905 PF16363 GDP-mannose 4,6 dehydratase RA8CHR_00906 PF00535 Glycosyl transferase family 2 RA8CHR_00908 PF01370 NAD dependent epimerase/dehydratase family RA8CHR_00910 PF00005 ABC transporter RA8CHR_00911 PF01061 ABC-2 type transporter RA8CHR_00912 PF01050 Mannose-6-phosphate isomerase RA8CHR_00912 PF00483 Nucleotidyl transferase RA8CHR_00913 PF01757 Acyltransferase family RA8CHR_00914 PF00535 Glycosyl transferase family 2 RA8CHR_00915 PF00535 Glycosyl transferase family 2 RA8CHR_00917 PF00953 Glycosyl transferase family 4 RA8CHR_00918 PF00696 Amino acid kinase family RA8CHR_00920 PF16363 GDP-mannose 4,6 dehydratase RA8CHR_00921 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_00922 PF06628 Catalase-related immune-responsive RA8CHR_00922 PF00199 Catalase RA8CHR_00925 PF00679 Elongation factor G C-terminus RA8CHR_00925 PF03144 Elongation factor Tu domain 2 RA8CHR_00925 PF00009 Elongation factor Tu GTP binding domain RA8CHR_00925 PF14492 Elongation Factor G, domain II RA8CHR_00925 PF03764 Elongation factor G, domain IV RA8CHR_00926 PF01810 LysE type translocator RA8CHR_00929 PF01594 AI-2E family transporter RA8CHR_00930 PF00072 Response regulator receiver domain RA8CHR_00930 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_00931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00931 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00932 PF03741 Integral membrane protein TerC family RA8CHR_00936 PF07729 FCD domain RA8CHR_00936 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00938 PF04909 Amidohydrolase RA8CHR_00939 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_00940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_00941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00941 PF03466 LysR substrate binding domain RA8CHR_00942 PF01979 Amidohydrolase family RA8CHR_00943 PF01546 Peptidase family M20/M25/M40 RA8CHR_00943 PF07687 Peptidase dimerisation domain RA8CHR_00944 PF17391 Urocanase N-terminal domain RA8CHR_00944 PF17392 Urocanase C-terminal domain RA8CHR_00944 PF01175 Urocanase Rossmann-like domain RA8CHR_00947 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_00948 PF05995 Cysteine dioxygenase type I RA8CHR_00949 PF01568 Molydopterin dinucleotide binding domain RA8CHR_00949 PF00384 Molybdopterin oxidoreductase RA8CHR_00951 PF00561 alpha/beta hydrolase fold RA8CHR_00952 PF00743 Flavin-binding monooxygenase-like RA8CHR_00953 PF01569 PAP2 superfamily RA8CHR_00955 PF06745 KaiC RA8CHR_00956 PF16736 Single Cache-like RA8CHR_00956 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00956 PF00989 PAS fold RA8CHR_00957 PF02615 Malate/L-lactate dehydrogenase RA8CHR_00958 PF08666 SAF domain RA8CHR_00958 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA8CHR_00959 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_00961 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_00962 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_00962 PF07729 FCD domain RA8CHR_00965 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_00966 PF00171 Aldehyde dehydrogenase family RA8CHR_00967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_00967 PF03466 LysR substrate binding domain RA8CHR_00968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_00968 PF08447 PAS fold RA8CHR_00968 PF13493 Domain of unknown function (DUF4118) RA8CHR_00968 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_00968 PF00989 PAS fold RA8CHR_00968 PF13426 PAS domain RA8CHR_00969 PF00072 Response regulator receiver domain RA8CHR_00969 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_00970 PF00072 Response regulator receiver domain RA8CHR_00970 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_00973 PF00892 EamA-like transporter family RA8CHR_00974 PF01040 UbiA prenyltransferase family RA8CHR_00977 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_00977 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_00977 PF12806 Acetyl-CoA dehydrogenase C-terminal like RA8CHR_00977 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_00979 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_00979 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00979 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_00980 PF02803 Thiolase, C-terminal domain RA8CHR_00980 PF00108 Thiolase, N-terminal domain RA8CHR_00983 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_00984 PF01548 Transposase RA8CHR_00984 PF02371 Transposase IS116/IS110/IS902 family RA8CHR_00985 PF03061 Thioesterase superfamily RA8CHR_00986 PF00664 ABC transporter transmembrane region RA8CHR_00986 PF00005 ABC transporter RA8CHR_00987 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_00987 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_00989 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00990 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_00991 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_00991 PF00005 ABC transporter RA8CHR_00992 PF00005 ABC transporter RA8CHR_00993 PF01494 FAD binding domain RA8CHR_00994 PF17645 Arylmalonate decarboxylase RA8CHR_00995 PF00561 alpha/beta hydrolase fold RA8CHR_00997 PF00857 Isochorismatase family RA8CHR_00999 PF03466 LysR substrate binding domain RA8CHR_00999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01000 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_01001 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01002 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01003 PF00005 ABC transporter RA8CHR_01004 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_01005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_01007 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_01008 PF07690 Major Facilitator Superfamily RA8CHR_01009 PF07883 Cupin domain RA8CHR_01010 PF01738 Dienelactone hydrolase family RA8CHR_01011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01011 PF03466 LysR substrate binding domain RA8CHR_01012 PF01494 FAD binding domain RA8CHR_01014 PF03060 Nitronate monooxygenase RA8CHR_01015 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01016 PF00501 AMP-binding enzyme RA8CHR_01016 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01017 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01017 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01017 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01018 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01018 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01018 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01019 PF00108 Thiolase, N-terminal domain RA8CHR_01019 PF02803 Thiolase, C-terminal domain RA8CHR_01020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_01020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_01020 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01021 PF03466 LysR substrate binding domain RA8CHR_01021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01022 PF13085 2Fe-2S iron-sulfur cluster binding domain RA8CHR_01023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_01023 PF02203 Tar ligand binding domain homologue RA8CHR_01023 PF00672 HAMP domain RA8CHR_01024 PF01037 Lrp/AsnC ligand binding domain RA8CHR_01025 PF03746 LamB/YcsF family RA8CHR_01026 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01027 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_01030 PF01979 Amidohydrolase family RA8CHR_01033 PF00175 Oxidoreductase NAD-binding domain RA8CHR_01033 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_01033 PF00970 Oxidoreductase FAD-binding domain RA8CHR_01034 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RA8CHR_01035 PF13577 SnoaL-like domain RA8CHR_01036 PF00355 Rieske [2Fe-2S] domain RA8CHR_01036 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_01037 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01038 PF09339 IclR helix-turn-helix domain RA8CHR_01038 PF01614 Bacterial transcriptional regulator RA8CHR_01039 PF01435 Peptidase family M48 RA8CHR_01041 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_01044 PF01209 ubiE/COQ5 methyltransferase family RA8CHR_01046 PF01479 S4 domain RA8CHR_01046 PF00849 RNA pseudouridylate synthase RA8CHR_01047 PF00753 Metallo-beta-lactamase superfamily RA8CHR_01047 PF16123 Hydroxyacylglutathione hydrolase C-terminus RA8CHR_01048 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01049 PF00676 Dehydrogenase E1 component RA8CHR_01049 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal RA8CHR_01050 PF02779 Transketolase, pyrimidine binding domain RA8CHR_01050 PF02780 Transketolase, C-terminal domain RA8CHR_01051 PF00364 Biotin-requiring enzyme RA8CHR_01051 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA8CHR_01051 PF02817 e3 binding domain RA8CHR_01053 PF16200 C-terminal region of band_7 RA8CHR_01053 PF01145 SPFH domain / Band 7 family RA8CHR_01054 PF01544 CorA-like Mg2+ transporter protein RA8CHR_01055 PF01979 Amidohydrolase family RA8CHR_01057 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01058 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01061 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01062 PF03466 LysR substrate binding domain RA8CHR_01062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01063 PF13454 FAD-NAD(P)-binding RA8CHR_01065 PF01678 Diaminopimelate epimerase RA8CHR_01068 PF02899 Phage integrase, N-terminal SAM-like domain RA8CHR_01068 PF00589 Phage integrase family RA8CHR_01069 PF17785 PUA-like domain RA8CHR_01069 PF10672 S-adenosylmethionine-dependent methyltransferase RA8CHR_01070 PF07683 Cobalamin synthesis protein cobW C-terminal domain RA8CHR_01070 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA8CHR_01071 PF01258 Prokaryotic dksA/traR C4-type zinc finger RA8CHR_01073 PF00227 Proteasome subunit RA8CHR_01074 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_01074 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_01075 PF02381 MraZ protein, putative antitoxin-like RA8CHR_01076 PF01795 MraW methylase family RA8CHR_01078 PF00905 Penicillin binding protein transpeptidase domain RA8CHR_01078 PF03717 Penicillin-binding Protein dimerisation domain RA8CHR_01079 PF08245 Mur ligase middle domain RA8CHR_01079 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01080 PF08245 Mur ligase middle domain RA8CHR_01080 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01080 PF01225 Mur ligase family, catalytic domain RA8CHR_01081 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RA8CHR_01081 PF00953 Glycosyl transferase family 4 RA8CHR_01082 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01082 PF08245 Mur ligase middle domain RA8CHR_01083 PF01098 Cell cycle protein RA8CHR_01084 PF04101 Glycosyltransferase family 28 C-terminal domain RA8CHR_01084 PF03033 Glycosyltransferase family 28 N-terminal domain RA8CHR_01085 PF08245 Mur ligase middle domain RA8CHR_01085 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01085 PF01225 Mur ligase family, catalytic domain RA8CHR_01086 PF01820 D-ala D-ala ligase N-terminus RA8CHR_01086 PF07478 D-ala D-ala ligase C-terminus RA8CHR_01087 PF03799 Cell division protein FtsQ RA8CHR_01087 PF08478 POTRA domain, FtsQ-type RA8CHR_01088 PF02491 SHS2 domain inserted in FTSA RA8CHR_01089 PF00091 Tubulin/FtsZ family, GTPase domain RA8CHR_01089 PF12327 FtsZ family, C-terminal domain RA8CHR_01090 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RA8CHR_01095 PF04542 Sigma-70 region 2 RA8CHR_01095 PF04545 Sigma-70, region 4 RA8CHR_01099 PF02075 Crossover junction endodeoxyribonuclease RuvC RA8CHR_01103 PF00912 Transglycosylase RA8CHR_01104 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA8CHR_01104 PF08501 Shikimate dehydrogenase substrate binding domain RA8CHR_01104 PF01488 Shikimate / quinate 5-dehydrogenase RA8CHR_01106 PF00773 RNB domain RA8CHR_01106 PF00575 S1 RNA binding domain RA8CHR_01106 PF08206 Ribonuclease B OB domain RA8CHR_01106 PF17876 Cold shock domain RA8CHR_01107 PF05728 Uncharacterised protein family (UPF0227) RA8CHR_01108 PF01098 Cell cycle protein RA8CHR_01109 PF01523 Putative modulator of DNA gyrase RA8CHR_01110 PF00793 DAHP synthetase I family RA8CHR_01112 PF01225 Mur ligase family, catalytic domain RA8CHR_01112 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01112 PF08245 Mur ligase middle domain RA8CHR_01114 PF00578 AhpC/TSA family RA8CHR_01115 PF00364 Biotin-requiring enzyme RA8CHR_01116 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_01116 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_01116 PF02785 Biotin carboxylase C-terminal domain RA8CHR_01119 PF00294 pfkB family carbohydrate kinase RA8CHR_01121 PF00268 Ribonucleotide reductase, small chain RA8CHR_01122 PF02867 Ribonucleotide reductase, barrel domain RA8CHR_01122 PF00317 Ribonucleotide reductase, all-alpha domain RA8CHR_01122 PF03477 ATP cone domain RA8CHR_01124 PF02954 Bacterial regulatory protein, Fis family RA8CHR_01124 PF00158 Sigma-54 interaction domain RA8CHR_01124 PF00072 Response regulator receiver domain RA8CHR_01125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01125 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_01128 PF02978 Signal peptide binding domain RA8CHR_01128 PF02881 SRP54-type protein, helical bundle domain RA8CHR_01128 PF00448 SRP54-type protein, GTPase domain RA8CHR_01129 PF00535 Glycosyl transferase family 2 RA8CHR_01130 PF00072 Response regulator receiver domain RA8CHR_01130 PF00158 Sigma-54 interaction domain RA8CHR_01132 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_01132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01133 PF04055 Radical SAM superfamily RA8CHR_01133 PF01938 TRAM domain RA8CHR_01133 PF00919 Uncharacterized protein family UPF0004 RA8CHR_01135 PF13533 Biotin-lipoyl like RA8CHR_01136 PF00873 AcrB/AcrD/AcrF family RA8CHR_01141 PF00501 AMP-binding enzyme RA8CHR_01141 PF00550 Phosphopantetheine attachment site RA8CHR_01141 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01141 PF00668 Condensation domain RA8CHR_01142 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01142 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_01142 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_01142 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_01142 PF00550 Phosphopantetheine attachment site RA8CHR_01142 PF00668 Condensation domain RA8CHR_01142 PF00202 Aminotransferase class-III RA8CHR_01142 PF00501 AMP-binding enzyme RA8CHR_01143 PF00300 Histidine phosphatase superfamily (branch 1) RA8CHR_01145 PF01171 PP-loop family RA8CHR_01150 PF17263 Family of unknown function (DUF5329) RA8CHR_01151 PF00459 Inositol monophosphatase family RA8CHR_01154 PF00480 ROK family RA8CHR_01156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01156 PF03466 LysR substrate binding domain RA8CHR_01157 PF00155 Aminotransferase class I and II RA8CHR_01157 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01159 PF00982 Glycosyltransferase family 20 RA8CHR_01160 PF00723 Glycosyl hydrolases family 15 RA8CHR_01161 PF02358 Trehalose-phosphatase RA8CHR_01162 PF01966 HD domain RA8CHR_01162 PF01743 Poly A polymerase head domain RA8CHR_01162 PF12627 Probable RNA and SrmB- binding site of polymerase A RA8CHR_01164 PF02308 MgtC family RA8CHR_01165 PF10145 Phage-related minor tail protein RA8CHR_01165 PF01551 Peptidase family M23 RA8CHR_01165 PF01464 Transglycosylase SLT domain RA8CHR_01166 PF01812 5-formyltetrahydrofolate cyclo-ligase family RA8CHR_01167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01167 PF03466 LysR substrate binding domain RA8CHR_01170 PF00027 Cyclic nucleotide-binding domain RA8CHR_01170 PF13545 Crp-like helix-turn-helix domain RA8CHR_01174 PF12804 MobA-like NTP transferase domain RA8CHR_01174 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_01175 PF01037 Lrp/AsnC ligand binding domain RA8CHR_01176 PF01380 SIS domain RA8CHR_01177 PF13610 DDE domain RA8CHR_01181 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_01183 PF08659 KR domain RA8CHR_01183 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_01183 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_01183 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_01183 PF14765 Polyketide synthase dehydratase RA8CHR_01183 PF00550 Phosphopantetheine attachment site RA8CHR_01183 PF00107 Zinc-binding dehydrogenase RA8CHR_01183 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_01183 PF00698 Acyl transferase domain RA8CHR_01184 PF00296 Luciferase-like monooxygenase RA8CHR_01186 PF01613 Flavin reductase like domain RA8CHR_01187 PF04303 PrpF protein RA8CHR_01188 PF00501 AMP-binding enzyme RA8CHR_01188 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01191 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01195 PF04303 PrpF protein RA8CHR_01196 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01198 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01199 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01199 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01199 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01200 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01201 PF00583 Acetyltransferase (GNAT) family RA8CHR_01201 PF13380 CoA binding domain RA8CHR_01201 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_01203 PF00330 Aconitase family (aconitate hydratase) RA8CHR_01204 PF00694 Aconitase C-terminal domain RA8CHR_01205 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01206 PF04303 PrpF protein RA8CHR_01213 PF03741 Integral membrane protein TerC family RA8CHR_01222 PF01027 Inhibitor of apoptosis-promoting Bax1 RA8CHR_01224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01224 PF03466 LysR substrate binding domain RA8CHR_01225 PF00155 Aminotransferase class I and II RA8CHR_01226 PF00893 Small Multidrug Resistance protein RA8CHR_01227 PF02627 Carboxymuconolactone decarboxylase family RA8CHR_01228 PF00155 Aminotransferase class I and II RA8CHR_01228 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01229 PF02525 Flavodoxin-like fold RA8CHR_01231 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RA8CHR_01231 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA8CHR_01233 PF00155 Aminotransferase class I and II RA8CHR_01234 PF00155 Aminotransferase class I and II RA8CHR_01234 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01235 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8CHR_01237 PF00034 Cytochrome c RA8CHR_01240 PF00665 Integrase core domain RA8CHR_01240 PF13936 Helix-turn-helix domain RA8CHR_01243 PF05683 Fumarase C-terminus RA8CHR_01243 PF05681 Fumarate hydratase (Fumerase) RA8CHR_01245 PF13417 Glutathione S-transferase, N-terminal domain RA8CHR_01246 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_01248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01248 PF03466 LysR substrate binding domain RA8CHR_01249 PF07883 Cupin domain RA8CHR_01250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_01250 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01251 PF13609 Gram-negative porin RA8CHR_01252 PF01494 FAD binding domain RA8CHR_01253 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_01253 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_01254 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01255 PF01361 Tautomerase enzyme RA8CHR_01257 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01258 PF09339 IclR helix-turn-helix domain RA8CHR_01258 PF01614 Bacterial transcriptional regulator RA8CHR_01260 PF03466 LysR substrate binding domain RA8CHR_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01261 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01262 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01262 PF17874 MalT-like TPR region RA8CHR_01269 PF00155 Aminotransferase class I and II RA8CHR_01269 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01270 PF00155 Aminotransferase class I and II RA8CHR_01270 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01273 PF00085 Thioredoxin RA8CHR_01277 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01278 PF01435 Peptidase family M48 RA8CHR_01279 PF00072 Response regulator receiver domain RA8CHR_01279 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01280 PF12833 Helix-turn-helix domain RA8CHR_01280 PF01965 DJ-1/PfpI family RA8CHR_01281 PF04972 BON domain RA8CHR_01283 PF00011 Hsp20/alpha crystallin family RA8CHR_01285 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_01285 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_01285 PF17871 AAA lid domain RA8CHR_01285 PF02861 Clp amino terminal domain, pathogenicity island component RA8CHR_01285 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_01286 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_01286 PF00072 Response regulator receiver domain RA8CHR_01286 PF13426 PAS domain RA8CHR_01286 PF08448 PAS fold RA8CHR_01286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01287 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01287 PF07729 FCD domain RA8CHR_01289 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01290 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA8CHR_01290 PF08666 SAF domain RA8CHR_01291 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_01292 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RA8CHR_01294 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_01295 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01296 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_01297 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01298 PF02515 CoA-transferase family III RA8CHR_01299 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01301 PF03466 LysR substrate binding domain RA8CHR_01303 PF00248 Aldo/keto reductase family RA8CHR_01304 PF07690 Major Facilitator Superfamily RA8CHR_01305 PF03466 LysR substrate binding domain RA8CHR_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01306 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_01307 PF13417 Glutathione S-transferase, N-terminal domain RA8CHR_01309 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_01311 PF18665 Tetracyclin repressor-like, C-terminal domain RA8CHR_01311 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_01312 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_01312 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_01313 PF13378 Enolase C-terminal domain-like RA8CHR_01313 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_01318 PF10011 Predicted membrane protein (DUF2254) RA8CHR_01319 PF01204 Trehalase RA8CHR_01320 PF17820 PDZ domain RA8CHR_01320 PF13180 PDZ domain RA8CHR_01322 PF16884 N-terminal domain of oxidoreductase RA8CHR_01322 PF00107 Zinc-binding dehydrogenase RA8CHR_01324 PF07690 Major Facilitator Superfamily RA8CHR_01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01325 PF03466 LysR substrate binding domain RA8CHR_01331 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8CHR_01334 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA8CHR_01334 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RA8CHR_01335 PF13746 4Fe-4S dicluster domain RA8CHR_01335 PF12801 4Fe-4S binding domain RA8CHR_01335 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RA8CHR_01338 PF13545 Crp-like helix-turn-helix domain RA8CHR_01338 PF00027 Cyclic nucleotide-binding domain RA8CHR_01339 PF06969 HemN C-terminal domain RA8CHR_01339 PF04055 Radical SAM superfamily RA8CHR_01341 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_01341 PF00583 Acetyltransferase (GNAT) family RA8CHR_01341 PF13380 CoA binding domain RA8CHR_01342 PF00753 Metallo-beta-lactamase superfamily RA8CHR_01342 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RA8CHR_01342 PF10996 Beta-Casp domain RA8CHR_01343 PF02885 Glycosyl transferase family, helical bundle domain RA8CHR_01343 PF00591 Glycosyl transferase family, a/b domain RA8CHR_01343 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RA8CHR_01344 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RA8CHR_01344 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RA8CHR_01345 PF00027 Cyclic nucleotide-binding domain RA8CHR_01345 PF13545 Crp-like helix-turn-helix domain RA8CHR_01346 PF00072 Response regulator receiver domain RA8CHR_01346 PF13426 PAS domain RA8CHR_01346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01347 PF00072 Response regulator receiver domain RA8CHR_01347 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_01349 PF05951 Bacterial protein of unknown function (DUF882) RA8CHR_01352 PF00005 ABC transporter RA8CHR_01355 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_01358 PF00561 alpha/beta hydrolase fold RA8CHR_01358 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RA8CHR_01360 PF00690 Cation transporter/ATPase, N-terminus RA8CHR_01360 PF00689 Cation transporting ATPase, C-terminus RA8CHR_01362 PF00582 Universal stress protein family RA8CHR_01366 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RA8CHR_01366 PF09363 XFP C-terminal domain RA8CHR_01366 PF09364 XFP N-terminal domain RA8CHR_01367 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_01367 PF13305 Tetracyclin repressor-like, C-terminal domain RA8CHR_01368 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01369 PF02515 CoA-transferase family III RA8CHR_01370 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_01371 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01373 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01375 PF04304 Protein of unknown function (DUF454) RA8CHR_01379 PF13409 Glutathione S-transferase, N-terminal domain RA8CHR_01380 PF01425 Amidase RA8CHR_01381 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_01382 PF03466 LysR substrate binding domain RA8CHR_01382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01383 PF00881 Nitroreductase family RA8CHR_01384 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_01385 PF03358 NADPH-dependent FMN reductase RA8CHR_01387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01387 PF03466 LysR substrate binding domain RA8CHR_01388 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01389 PF01425 Amidase RA8CHR_01392 PF02733 Dak1 domain RA8CHR_01393 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01394 PF00701 Dihydrodipicolinate synthetase family RA8CHR_01396 PF12833 Helix-turn-helix domain RA8CHR_01396 PF06719 AraC-type transcriptional regulator N-terminus RA8CHR_01397 PF03472 Autoinducer binding domain RA8CHR_01397 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01401 PF00202 Aminotransferase class-III RA8CHR_01402 PF07228 Stage II sporulation protein E (SpoIIE) RA8CHR_01402 PF13426 PAS domain RA8CHR_01408 PF01965 DJ-1/PfpI family RA8CHR_01409 PF01965 DJ-1/PfpI family RA8CHR_01413 PF01292 Prokaryotic cytochrome b561 RA8CHR_01414 PF07690 Major Facilitator Superfamily RA8CHR_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01415 PF03466 LysR substrate binding domain RA8CHR_01417 PF03797 Autotransporter beta-domain RA8CHR_01417 PF16168 Adhesin of bacterial autotransporter system, probable stalk RA8CHR_01417 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_01418 PF02446 4-alpha-glucanotransferase RA8CHR_01419 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RA8CHR_01419 PF11941 Domain of unknown function (DUF3459) RA8CHR_01419 PF00128 Alpha amylase, catalytic domain RA8CHR_01420 PF00128 Alpha amylase, catalytic domain RA8CHR_01420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RA8CHR_01421 PF05552 Conserved TM helix RA8CHR_01422 PF16657 Maltogenic Amylase, C-terminal domain RA8CHR_01422 PF00128 Alpha amylase, catalytic domain RA8CHR_01423 PF00128 Alpha amylase, catalytic domain RA8CHR_01423 PF11896 Domain of unknown function (DUF3416) RA8CHR_01424 PF02806 Alpha amylase, C-terminal all-beta domain RA8CHR_01424 PF00128 Alpha amylase, catalytic domain RA8CHR_01424 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RA8CHR_01426 PF12852 Cupin RA8CHR_01426 PF12833 Helix-turn-helix domain RA8CHR_01431 PF01979 Amidohydrolase family RA8CHR_01435 PF08443 RimK-like ATP-grasp domain RA8CHR_01435 PF08245 Mur ligase middle domain RA8CHR_01435 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01436 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_01436 PF08245 Mur ligase middle domain RA8CHR_01436 PF08443 RimK-like ATP-grasp domain RA8CHR_01437 PF00005 ABC transporter RA8CHR_01437 PF00664 ABC transporter transmembrane region RA8CHR_01439 PF06508 Queuosine biosynthesis protein QueC RA8CHR_01440 PF00005 ABC transporter RA8CHR_01440 PF06472 ABC transporter transmembrane region 2 RA8CHR_01442 PF00482 Type II secretion system (T2SS), protein F RA8CHR_01444 PF00437 Type II/IV secretion system protein RA8CHR_01445 PF03958 Bacterial type II/III secretion system short domain RA8CHR_01445 PF00263 Bacterial type II and III secretion system protein RA8CHR_01450 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_01450 PF11612 Type II secretion system (T2SS), protein J RA8CHR_01451 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_01451 PF02501 Type II secretion system (T2SS), protein I RA8CHR_01453 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_01453 PF08334 Type II secretion system (T2SS), protein G RA8CHR_01455 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_01455 PF00585 C-terminal regulatory domain of Threonine dehydratase RA8CHR_01457 PF02566 OsmC-like protein RA8CHR_01458 PF03232 Ubiquinone biosynthesis protein COQ7 RA8CHR_01459 PF13609 Gram-negative porin RA8CHR_01460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_01461 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01462 PF07687 Peptidase dimerisation domain RA8CHR_01462 PF01546 Peptidase family M20/M25/M40 RA8CHR_01463 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_01464 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01464 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_01465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_01465 PF00005 ABC transporter RA8CHR_01466 PF00005 ABC transporter RA8CHR_01466 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_01467 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RA8CHR_01467 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RA8CHR_01470 PF00923 Transaldolase/Fructose-6-phosphate aldolase RA8CHR_01471 PF00342 Phosphoglucose isomerase RA8CHR_01472 PF13396 Phospholipase_D-nuclease N-terminal RA8CHR_01472 PF13091 PLD-like domain RA8CHR_01474 PF00118 TCP-1/cpn60 chaperonin family RA8CHR_01475 PF00166 Chaperonin 10 Kd subunit RA8CHR_01476 PF03466 LysR substrate binding domain RA8CHR_01476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01477 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_01477 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_01477 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_01478 PF00171 Aldehyde dehydrogenase family RA8CHR_01479 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01480 PF01494 FAD binding domain RA8CHR_01481 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_01481 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_01482 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01485 PF00107 Zinc-binding dehydrogenase RA8CHR_01485 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_01485 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_01485 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_01485 PF08659 KR domain RA8CHR_01485 PF00550 Phosphopantetheine attachment site RA8CHR_01485 PF14765 Polyketide synthase dehydratase RA8CHR_01485 PF00698 Acyl transferase domain RA8CHR_01485 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_01486 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01487 PF00171 Aldehyde dehydrogenase family RA8CHR_01488 PF03466 LysR substrate binding domain RA8CHR_01488 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01490 PF07519 Tannase and feruloyl esterase RA8CHR_01492 PF04909 Amidohydrolase RA8CHR_01494 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_01495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_01496 PF03737 Aldolase/RraA RA8CHR_01502 PF00593 TonB dependent receptor RA8CHR_01502 PF07715 TonB-dependent Receptor Plug Domain RA8CHR_01505 PF07715 TonB-dependent Receptor Plug Domain RA8CHR_01505 PF00593 TonB dependent receptor RA8CHR_01506 PF05139 Erythromycin esterase RA8CHR_01506 PF00156 Phosphoribosyl transferase domain RA8CHR_01507 PF02773 S-adenosylmethionine synthetase, C-terminal domain RA8CHR_01507 PF00438 S-adenosylmethionine synthetase, N-terminal domain RA8CHR_01507 PF02772 S-adenosylmethionine synthetase, central domain RA8CHR_01509 PF03279 Bacterial lipid A biosynthesis acyltransferase RA8CHR_01510 PF00561 alpha/beta hydrolase fold RA8CHR_01511 PF01926 50S ribosome-binding GTPase RA8CHR_01512 PF00034 Cytochrome c RA8CHR_01513 PF05140 ResB-like family RA8CHR_01514 PF01578 Cytochrome C assembly protein RA8CHR_01515 PF00174 Oxidoreductase molybdopterin binding domain RA8CHR_01516 PF01794 Ferric reductase like transmembrane component RA8CHR_01517 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RA8CHR_01517 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RA8CHR_01518 PF01491 Frataxin-like domain RA8CHR_01519 PF17092 Penicillin-binding protein OB-like domain RA8CHR_01519 PF00905 Penicillin binding protein transpeptidase domain RA8CHR_01519 PF00912 Transglycosylase RA8CHR_01524 PF07660 Secretin and TonB N terminus short domain RA8CHR_01524 PF11741 AMIN domain RA8CHR_01524 PF00263 Bacterial type II and III secretion system protein RA8CHR_01524 PF03958 Bacterial type II/III secretion system short domain RA8CHR_01525 PF01202 Shikimate kinase RA8CHR_01526 PF01761 3-dehydroquinate synthase RA8CHR_01527 PF01966 HD domain RA8CHR_01527 PF13286 Phosphohydrolase-associated domain RA8CHR_01532 PF00310 Glutamine amidotransferases class-II RA8CHR_01532 PF01493 GXGXG motif RA8CHR_01532 PF04898 Glutamate synthase central domain RA8CHR_01532 PF01645 Conserved region in glutamate synthase RA8CHR_01533 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01533 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RA8CHR_01534 PF00005 ABC transporter RA8CHR_01535 PF02405 Permease MlaE RA8CHR_01536 PF02470 MlaD protein RA8CHR_01537 PF04333 MlaA lipoprotein RA8CHR_01540 PF00005 ABC transporter RA8CHR_01541 PF01061 ABC-2 type transporter RA8CHR_01542 PF01722 BolA-like protein RA8CHR_01543 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA8CHR_01544 PF01634 ATP phosphoribosyltransferase RA8CHR_01545 PF00815 Histidinol dehydrogenase RA8CHR_01547 PF00155 Aminotransferase class I and II RA8CHR_01548 PF00475 Imidazoleglycerol-phosphate dehydratase RA8CHR_01549 PF00117 Glutamine amidotransferase class-I RA8CHR_01550 PF00977 Histidine biosynthesis protein RA8CHR_01551 PF16168 Adhesin of bacterial autotransporter system, probable stalk RA8CHR_01551 PF03797 Autotransporter beta-domain RA8CHR_01551 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_01552 PF01263 Aldose 1-epimerase RA8CHR_01553 PF00977 Histidine biosynthesis protein RA8CHR_01554 PF01502 Phosphoribosyl-AMP cyclohydrolase RA8CHR_01555 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RA8CHR_01557 PF01230 HIT domain RA8CHR_01558 PF02416 mttA/Hcf106 family RA8CHR_01559 PF02416 mttA/Hcf106 family RA8CHR_01560 PF00902 Sec-independent protein translocase protein (TatC) RA8CHR_01561 PF13180 PDZ domain RA8CHR_01561 PF17820 PDZ domain RA8CHR_01562 PF01784 NIF3 (NGG1p interacting factor 3) RA8CHR_01563 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RA8CHR_01564 PF01741 Large-conductance mechanosensitive channel, MscL RA8CHR_01565 PF00355 Rieske [2Fe-2S] domain RA8CHR_01565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RA8CHR_01566 PF00033 Cytochrome b/b6/petB RA8CHR_01566 PF00032 Cytochrome b(C-terminal)/b6/petD RA8CHR_01567 PF02167 Cytochrome C1 family RA8CHR_01568 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_01568 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_01569 PF04386 Stringent starvation protein B RA8CHR_01571 PF00857 Isochorismatase family RA8CHR_01573 PF00561 alpha/beta hydrolase fold RA8CHR_01574 PF17645 Arylmalonate decarboxylase RA8CHR_01576 PF17954 Quercetinase C-terminal cupin domain RA8CHR_01576 PF02678 Pirin RA8CHR_01577 PF01047 MarR family RA8CHR_01578 PF00866 Ring hydroxylating beta subunit RA8CHR_01579 PF00355 Rieske [2Fe-2S] domain RA8CHR_01579 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_01580 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01580 PF14759 Reductase C-terminal RA8CHR_01581 PF00355 Rieske [2Fe-2S] domain RA8CHR_01582 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_01584 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_01585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_01585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_01586 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_01586 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_01587 PF01799 [2Fe-2S] binding domain RA8CHR_01587 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_01588 PF09084 NMT1/THI5 like RA8CHR_01589 PF00005 ABC transporter RA8CHR_01590 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01597 PF07517 SecA DEAD-like domain RA8CHR_01597 PF02810 SEC-C motif RA8CHR_01597 PF01043 SecA preprotein cross-linking domain RA8CHR_01597 PF07516 SecA Wing and Scaffold domain RA8CHR_01598 PF01960 ArgJ family RA8CHR_01600 PF00293 NUDIX domain RA8CHR_01601 PF03884 DNA gyrase inhibitor YacG RA8CHR_01602 PF07072 Cell division protein RA8CHR_01604 PF03062 MBOAT, membrane-bound O-acyltransferase family RA8CHR_01605 PF01121 Dephospho-CoA kinase RA8CHR_01606 PF01478 Type IV leader peptidase family RA8CHR_01606 PF06750 Bacterial Peptidase A24 N-terminal domain RA8CHR_01607 PF00482 Type II secretion system (T2SS), protein F RA8CHR_01608 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RA8CHR_01608 PF00437 Type II/IV secretion system protein RA8CHR_01610 PF00534 Glycosyl transferases group 1 RA8CHR_01610 PF13439 Glycosyltransferase Family 4 RA8CHR_01614 PF17760 UvrA interaction domain RA8CHR_01614 PF00005 ABC transporter RA8CHR_01614 PF17755 UvrA DNA-binding domain RA8CHR_01618 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RA8CHR_01618 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RA8CHR_01618 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RA8CHR_01619 PF16363 GDP-mannose 4,6 dehydratase RA8CHR_01620 PF00535 Glycosyl transferase family 2 RA8CHR_01621 PF00206 Lyase RA8CHR_01621 PF14698 Argininosuccinate lyase C-terminal RA8CHR_01622 PF07694 5TMR of 5TMR-LYT RA8CHR_01622 PF06580 Histidine kinase RA8CHR_01623 PF04397 LytTr DNA-binding domain RA8CHR_01623 PF00072 Response regulator receiver domain RA8CHR_01624 PF01594 AI-2E family transporter RA8CHR_01627 PF00083 Sugar (and other) transporter RA8CHR_01629 PF01070 FMN-dependent dehydrogenase RA8CHR_01630 PF02560 Cyanate lyase C-terminal domain RA8CHR_01631 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8CHR_01632 PF01070 FMN-dependent dehydrogenase RA8CHR_01633 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01634 PF13378 Enolase C-terminal domain-like RA8CHR_01634 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01635 PF03466 LysR substrate binding domain RA8CHR_01636 PF17645 Arylmalonate decarboxylase RA8CHR_01637 PF04185 Phosphoesterase family RA8CHR_01637 PF05506 Domain of unknown function (DUF756) RA8CHR_01639 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01640 PF00005 ABC transporter RA8CHR_01643 PF01380 SIS domain RA8CHR_01643 PF01418 Helix-turn-helix domain, rpiR family RA8CHR_01645 PF00171 Aldehyde dehydrogenase family RA8CHR_01648 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_01649 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RA8CHR_01650 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_01651 PF00701 Dihydrodipicolinate synthetase family RA8CHR_01652 PF08666 SAF domain RA8CHR_01652 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA8CHR_01653 PF13378 Enolase C-terminal domain-like RA8CHR_01653 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_01654 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RA8CHR_01655 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01656 PF03466 LysR substrate binding domain RA8CHR_01661 PF04185 Phosphoesterase family RA8CHR_01661 PF05506 Domain of unknown function (DUF756) RA8CHR_01662 PF01380 SIS domain RA8CHR_01662 PF01418 Helix-turn-helix domain, rpiR family RA8CHR_01663 PF00905 Penicillin binding protein transpeptidase domain RA8CHR_01663 PF00912 Transglycosylase RA8CHR_01665 PF03061 Thioesterase superfamily RA8CHR_01671 PF13276 HTH-like domain RA8CHR_01671 PF13683 Integrase core domain RA8CHR_01672 PF01527 Transposase RA8CHR_01674 PF00145 C-5 cytosine-specific DNA methylase RA8CHR_01675 PF02463 RecF/RecN/SMC N terminal domain RA8CHR_01675 PF06470 SMC proteins Flexible Hinge Domain RA8CHR_01676 PF18766 SWI2/SNF2 ATPase RA8CHR_01676 PF11867 Domain of unknown function (DUF3387) RA8CHR_01676 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RA8CHR_01678 PF01420 Type I restriction modification DNA specificity domain RA8CHR_01679 PF02384 N-6 DNA Methylase RA8CHR_01689 PF00348 Polyprenyl synthetase RA8CHR_01690 PF00829 Ribosomal prokaryotic L21 protein RA8CHR_01691 PF01016 Ribosomal L27 protein RA8CHR_01692 PF01926 50S ribosome-binding GTPase RA8CHR_01692 PF01018 GTP1/OBG RA8CHR_01693 PF01472 PUA domain RA8CHR_01693 PF00696 Amino acid kinase family RA8CHR_01695 PF00293 NUDIX domain RA8CHR_01696 PF04073 Aminoacyl-tRNA editing domain RA8CHR_01696 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RA8CHR_01696 PF03129 Anticodon binding domain RA8CHR_01697 PF01464 Transglycosylase SLT domain RA8CHR_01697 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RA8CHR_01698 PF03471 Transporter associated domain RA8CHR_01698 PF00571 CBS domain RA8CHR_01698 PF01595 Cyclin M transmembrane N-terminal domain RA8CHR_01699 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_01699 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_01699 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_01701 PF00462 Glutaredoxin RA8CHR_01702 PF17827 PrmC N-terminal domain RA8CHR_01702 PF05175 Methyltransferase small domain RA8CHR_01703 PF00472 RF-1 domain RA8CHR_01703 PF03462 PCRF domain RA8CHR_01704 PF01488 Shikimate / quinate 5-dehydrogenase RA8CHR_01704 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RA8CHR_01704 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RA8CHR_01706 PF12794 Mechanosensitive ion channel inner membrane domain 1 RA8CHR_01706 PF00924 Mechanosensitive ion channel RA8CHR_01706 PF12795 Mechanosensitive ion channel porin domain RA8CHR_01707 PF03009 Glycerophosphoryl diester phosphodiesterase family RA8CHR_01708 PF00005 ABC transporter RA8CHR_01708 PF17912 MalK OB fold domain RA8CHR_01709 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01710 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01711 PF13416 Bacterial extracellular solute-binding protein RA8CHR_01712 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_01712 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_01712 PF01842 ACT domain RA8CHR_01716 PF01209 ubiE/COQ5 methyltransferase family RA8CHR_01719 PF03109 ABC1 family RA8CHR_01720 PF00474 Sodium:solute symporter family RA8CHR_01723 PF02938 GAD domain RA8CHR_01723 PF01336 OB-fold nucleic acid binding domain RA8CHR_01723 PF00152 tRNA synthetases class II (D, K and N) RA8CHR_01725 PF03372 Endonuclease/Exonuclease/phosphatase family RA8CHR_01726 PF01227 GTP cyclohydrolase I RA8CHR_01734 PF07043 Protein of unknown function (DUF1328) RA8CHR_01735 PF07730 Histidine kinase RA8CHR_01736 PF00072 Response regulator receiver domain RA8CHR_01736 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01739 PF05170 AsmA family RA8CHR_01740 PF00899 ThiF family RA8CHR_01741 PF13180 PDZ domain RA8CHR_01741 PF03572 Peptidase family S41 RA8CHR_01742 PF00300 Histidine phosphatase superfamily (branch 1) RA8CHR_01743 PF00581 Rhodanese-like domain RA8CHR_01744 PF00462 Glutaredoxin RA8CHR_01745 PF02556 Preprotein translocase subunit SecB RA8CHR_01746 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RA8CHR_01746 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RA8CHR_01747 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RA8CHR_01747 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RA8CHR_01748 PF02445 Quinolinate synthetase A protein RA8CHR_01749 PF00117 Glutamine amidotransferase class-I RA8CHR_01749 PF04715 Anthranilate synthase component I, N terminal region RA8CHR_01749 PF00425 chorismate binding enzyme RA8CHR_01750 PF01242 6-pyruvoyl tetrahydropterin synthase RA8CHR_01752 PF02569 Pantoate-beta-alanine ligase RA8CHR_01753 PF02548 Ketopantoate hydroxymethyltransferase RA8CHR_01754 PF02261 Aspartate decarboxylase RA8CHR_01755 PF00890 FAD binding domain RA8CHR_01755 PF02910 Fumarate reductase flavoprotein C-term RA8CHR_01756 PF02616 Segregation and condensation protein ScpA RA8CHR_01759 PF01740 STAS domain RA8CHR_01759 PF00916 Sulfate permease family RA8CHR_01761 PF09334 tRNA synthetases class I (M) RA8CHR_01761 PF01588 Putative tRNA binding domain RA8CHR_01762 PF04337 Protein of unknown function, DUF480 RA8CHR_01763 PF10609 NUBPL iron-transfer P-loop NTPase RA8CHR_01764 PF03466 LysR substrate binding domain RA8CHR_01764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01766 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RA8CHR_01766 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RA8CHR_01766 PF10531 SLBB domain RA8CHR_01767 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8CHR_01767 PF01568 Molydopterin dinucleotide binding domain RA8CHR_01767 PF00384 Molybdopterin oxidoreductase RA8CHR_01773 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8CHR_01773 PF00384 Molybdopterin oxidoreductase RA8CHR_01773 PF01568 Molydopterin dinucleotide binding domain RA8CHR_01774 PF13247 4Fe-4S dicluster domain RA8CHR_01778 PF02634 FdhD/NarQ family RA8CHR_01780 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_01780 PF00571 CBS domain RA8CHR_01781 PF01053 Cys/Met metabolism PLP-dependent enzyme RA8CHR_01783 PF02754 Cysteine-rich domain RA8CHR_01783 PF13183 4Fe-4S dicluster domain RA8CHR_01784 PF02915 Rubrerythrin RA8CHR_01785 PF03171 2OG-Fe(II) oxygenase superfamily RA8CHR_01785 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RA8CHR_01786 PF00005 ABC transporter RA8CHR_01791 PF04002 RadC-like JAB domain RA8CHR_01792 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_01793 PF02401 LytB protein RA8CHR_01794 PF13291 ACT domain RA8CHR_01794 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_01796 PF02403 Seryl-tRNA synthetase N-terminal domain RA8CHR_01796 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RA8CHR_01807 PF13439 Glycosyltransferase Family 4 RA8CHR_01807 PF00534 Glycosyl transferases group 1 RA8CHR_01808 PF02769 AIR synthase related protein, C-terminal domain RA8CHR_01808 PF00586 AIR synthase related protein, N-terminal domain RA8CHR_01811 PF00795 Carbon-nitrogen hydrolase RA8CHR_01813 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01813 PF00155 Aminotransferase class I and II RA8CHR_01815 PF01769 Divalent cation transporter RA8CHR_01815 PF00571 CBS domain RA8CHR_01815 PF03448 MgtE intracellular N domain RA8CHR_01816 PF00274 Fructose-bisphosphate aldolase class-I RA8CHR_01817 PF05088 Bacterial NAD-glutamate dehydrogenase RA8CHR_01819 PF00672 HAMP domain RA8CHR_01819 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_01819 PF00989 PAS fold RA8CHR_01819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01819 PF18698 Histidine kinase sensor domain RA8CHR_01820 PF00072 Response regulator receiver domain RA8CHR_01820 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01821 PF00579 tRNA synthetases class I (W and Y) RA8CHR_01822 PF02163 Peptidase family M50 RA8CHR_01823 PF01300 Telomere recombination RA8CHR_01825 PF02811 PHP domain RA8CHR_01827 PF03976 Polyphosphate kinase 2 (PPK2) RA8CHR_01831 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_01832 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_01833 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_01833 PF00005 ABC transporter RA8CHR_01834 PF00005 ABC transporter RA8CHR_01836 PF00355 Rieske [2Fe-2S] domain RA8CHR_01837 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01839 PF00970 Oxidoreductase FAD-binding domain RA8CHR_01839 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_01841 PF00005 ABC transporter RA8CHR_01842 PF01546 Peptidase family M20/M25/M40 RA8CHR_01842 PF07687 Peptidase dimerisation domain RA8CHR_01843 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01843 PF04324 BFD-like [2Fe-2S] binding domain RA8CHR_01844 PF00701 Dihydrodipicolinate synthetase family RA8CHR_01847 PF01979 Amidohydrolase family RA8CHR_01847 PF00449 Urease alpha-subunit, N-terminal domain RA8CHR_01848 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01848 PF07729 FCD domain RA8CHR_01849 PF07690 Major Facilitator Superfamily RA8CHR_01850 PF01774 UreD urease accessory protein RA8CHR_01851 PF14437 MafB19-like deaminase RA8CHR_01852 PF00355 Rieske [2Fe-2S] domain RA8CHR_01854 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01854 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01854 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01856 PF02515 CoA-transferase family III RA8CHR_01857 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01859 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01860 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01860 PF07729 FCD domain RA8CHR_01861 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01861 PF00501 AMP-binding enzyme RA8CHR_01862 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01862 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01862 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01863 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_01863 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_01863 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_01864 PF02803 Thiolase, C-terminal domain RA8CHR_01864 PF00108 Thiolase, N-terminal domain RA8CHR_01866 PF01636 Phosphotransferase enzyme family RA8CHR_01867 PF03466 LysR substrate binding domain RA8CHR_01867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01871 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_01871 PF00005 ABC transporter RA8CHR_01872 PF00005 ABC transporter RA8CHR_01873 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01873 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01873 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01874 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_01874 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_01874 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_01875 PF00501 AMP-binding enzyme RA8CHR_01875 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01876 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_01876 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_01877 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01878 PF03466 LysR substrate binding domain RA8CHR_01878 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01884 PF00027 Cyclic nucleotide-binding domain RA8CHR_01884 PF00520 Ion transport protein RA8CHR_01886 PF03358 NADPH-dependent FMN reductase RA8CHR_01889 PF03707 Bacterial signalling protein N terminal repeat RA8CHR_01889 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_01889 PF00563 EAL domain RA8CHR_01890 PF13439 Glycosyltransferase Family 4 RA8CHR_01890 PF00534 Glycosyl transferases group 1 RA8CHR_01893 PF07731 Multicopper oxidase RA8CHR_01893 PF07732 Multicopper oxidase RA8CHR_01896 PF04945 YHS domain RA8CHR_01898 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01899 PF00962 Adenosine/AMP deaminase RA8CHR_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01900 PF03466 LysR substrate binding domain RA8CHR_01901 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_01902 PF00561 alpha/beta hydrolase fold RA8CHR_01905 PF00561 alpha/beta hydrolase fold RA8CHR_01906 PF03781 Sulfatase-modifying factor enzyme 1 RA8CHR_01908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01908 PF03466 LysR substrate binding domain RA8CHR_01909 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01910 PF02515 CoA-transferase family III RA8CHR_01911 PF02690 Na+/Pi-cotransporter RA8CHR_01912 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01913 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase RA8CHR_01914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01914 PF03466 LysR substrate binding domain RA8CHR_01917 PF03706 Lysylphosphatidylglycerol synthase TM region RA8CHR_01921 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01922 PF00005 ABC transporter RA8CHR_01926 PF01515 Phosphate acetyl/butaryl transferase RA8CHR_01926 PF03949 Malic enzyme, NAD binding domain RA8CHR_01926 PF00390 Malic enzyme, N-terminal domain RA8CHR_01932 PF00175 Oxidoreductase NAD-binding domain RA8CHR_01932 PF00258 Flavodoxin RA8CHR_01932 PF00667 FAD binding domain RA8CHR_01933 PF07715 TonB-dependent Receptor Plug Domain RA8CHR_01933 PF00593 TonB dependent receptor RA8CHR_01934 PF18331 PKHD-type hydroxylase C-terminal domain RA8CHR_01934 PF13640 2OG-Fe(II) oxygenase superfamily RA8CHR_01937 PF07969 Amidohydrolase family RA8CHR_01938 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01939 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_01941 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01942 PF13378 Enolase C-terminal domain-like RA8CHR_01943 PF03466 LysR substrate binding domain RA8CHR_01943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_01944 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_01944 PF07689 KaiB domain RA8CHR_01949 PF09347 Domain of unknown function (DUF1989) RA8CHR_01953 PF00583 Acetyltransferase (GNAT) family RA8CHR_01954 PF00296 Luciferase-like monooxygenase RA8CHR_01956 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01958 PF00330 Aconitase family (aconitate hydratase) RA8CHR_01959 PF00694 Aconitase C-terminal domain RA8CHR_01960 PF04303 PrpF protein RA8CHR_01961 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01964 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01965 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01965 PF00501 AMP-binding enzyme RA8CHR_01966 PF00501 AMP-binding enzyme RA8CHR_01966 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_01971 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_01978 PF03466 LysR substrate binding domain RA8CHR_01978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01979 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA8CHR_01979 PF07683 Cobalamin synthesis protein cobW C-terminal domain RA8CHR_01980 PF01979 Amidohydrolase family RA8CHR_01981 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_01981 PF00005 ABC transporter RA8CHR_01982 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_01982 PF00005 ABC transporter RA8CHR_01983 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01983 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_01984 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_01987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_01988 PF13823 Alcohol dehydrogenase GroES-associated RA8CHR_01988 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_01988 PF00107 Zinc-binding dehydrogenase RA8CHR_01992 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_01992 PF00155 Aminotransferase class I and II RA8CHR_01994 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RA8CHR_01995 PF00005 ABC transporter RA8CHR_01996 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_01997 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_01997 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_01998 PF00083 Sugar (and other) transporter RA8CHR_01998 PF07690 Major Facilitator Superfamily RA8CHR_01999 PF00732 GMC oxidoreductase RA8CHR_01999 PF05199 GMC oxidoreductase RA8CHR_02000 PF09339 IclR helix-turn-helix domain RA8CHR_02000 PF01614 Bacterial transcriptional regulator RA8CHR_02001 PF03466 LysR substrate binding domain RA8CHR_02001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02002 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_02005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_02005 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_02005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_02006 PF13380 CoA binding domain RA8CHR_02006 PF00583 Acetyltransferase (GNAT) family RA8CHR_02006 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_02013 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_02014 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_02015 PF03466 LysR substrate binding domain RA8CHR_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02017 PF00501 AMP-binding enzyme RA8CHR_02017 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02018 PF00171 Aldehyde dehydrogenase family RA8CHR_02019 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02025 PF00263 Bacterial type II and III secretion system protein RA8CHR_02025 PF04972 BON domain RA8CHR_02025 PF13629 Pilus formation protein N terminal region RA8CHR_02032 PF00437 Type II/IV secretion system protein RA8CHR_02036 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_02036 PF00072 Response regulator receiver domain RA8CHR_02037 PF00672 HAMP domain RA8CHR_02037 PF07730 Histidine kinase RA8CHR_02037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02038 PF06213 Cobalamin biosynthesis protein CobT RA8CHR_02038 PF11775 Cobalamin biosynthesis protein CobT VWA domain RA8CHR_02039 PF08406 CbbQ/NirQ/NorQ C-terminal RA8CHR_02039 PF12556 Cobaltochelatase CobS subunit N terminal RA8CHR_02039 PF07728 AAA domain (dynein-related subfamily) RA8CHR_02040 PF01614 Bacterial transcriptional regulator RA8CHR_02040 PF09339 IclR helix-turn-helix domain RA8CHR_02041 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_02041 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_02041 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_02042 PF01515 Phosphate acetyl/butaryl transferase RA8CHR_02043 PF03466 LysR substrate binding domain RA8CHR_02043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02044 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8CHR_02044 PF00384 Molybdopterin oxidoreductase RA8CHR_02044 PF01568 Molydopterin dinucleotide binding domain RA8CHR_02045 PF12800 4Fe-4S binding domain RA8CHR_02045 PF13247 4Fe-4S dicluster domain RA8CHR_02046 PF04976 DMSO reductase anchor subunit (DmsC) RA8CHR_02050 PF01209 ubiE/COQ5 methyltransferase family RA8CHR_02053 PF08448 PAS fold RA8CHR_02053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02053 PF00072 Response regulator receiver domain RA8CHR_02053 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02053 PF13188 PAS domain RA8CHR_02054 PF13091 PLD-like domain RA8CHR_02060 PF01022 Bacterial regulatory protein, arsR family RA8CHR_02061 PF04185 Phosphoesterase family RA8CHR_02061 PF05506 Domain of unknown function (DUF756) RA8CHR_02063 PF00072 Response regulator receiver domain RA8CHR_02063 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02063 PF09308 LuxQ, periplasmic RA8CHR_02063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02064 PF07584 Aerotolerance regulator N-terminal RA8CHR_02064 PF00092 von Willebrand factor type A domain RA8CHR_02068 PF03466 LysR substrate binding domain RA8CHR_02068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02069 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02070 PF01425 Amidase RA8CHR_02074 PF00460 Flagella basal body rod protein RA8CHR_02075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA8CHR_02075 PF00460 Flagella basal body rod protein RA8CHR_02076 PF13860 FlgD Ig-like domain RA8CHR_02076 PF03963 Flagellar hook capping protein - N-terminal region RA8CHR_02076 PF13861 FlgD Tudor-like domain RA8CHR_02077 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA8CHR_02077 PF00460 Flagella basal body rod protein RA8CHR_02077 PF07559 Flagellar basal body protein FlaE RA8CHR_02078 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA8CHR_02078 PF00460 Flagella basal body rod protein RA8CHR_02079 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA8CHR_02079 PF00460 Flagella basal body rod protein RA8CHR_02080 PF02107 Flagellar L-ring protein RA8CHR_02081 PF02119 Flagellar P-ring protein RA8CHR_02082 PF10135 Rod binding protein RA8CHR_02082 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RA8CHR_02083 PF01584 CheW-like domain RA8CHR_02084 PF02203 Tar ligand binding domain homologue RA8CHR_02084 PF00672 HAMP domain RA8CHR_02084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_02085 PF01584 CheW-like domain RA8CHR_02086 PF02203 Tar ligand binding domain homologue RA8CHR_02086 PF00672 HAMP domain RA8CHR_02086 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_02087 PF02203 Tar ligand binding domain homologue RA8CHR_02087 PF00672 HAMP domain RA8CHR_02087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_02088 PF00672 HAMP domain RA8CHR_02088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_02088 PF02203 Tar ligand binding domain homologue RA8CHR_02089 PF00460 Flagella basal body rod protein RA8CHR_02089 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA8CHR_02090 PF00669 Bacterial flagellin N-terminal helical region RA8CHR_02092 PF07298 NnrU protein RA8CHR_02093 PF00561 alpha/beta hydrolase fold RA8CHR_02094 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_02095 PF01894 Uncharacterised protein family UPF0047 RA8CHR_02099 PF00578 AhpC/TSA family RA8CHR_02099 PF02683 Cytochrome C biogenesis protein transmembrane region RA8CHR_02099 PF17991 Thioredoxin like C-terminal domain RA8CHR_02100 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02100 PF00672 HAMP domain RA8CHR_02100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02102 PF02683 Cytochrome C biogenesis protein transmembrane region RA8CHR_02102 PF17991 Thioredoxin like C-terminal domain RA8CHR_02102 PF00578 AhpC/TSA family RA8CHR_02104 PF03466 LysR substrate binding domain RA8CHR_02104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02106 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_02106 PF00072 Response regulator receiver domain RA8CHR_02107 PF02566 OsmC-like protein RA8CHR_02109 PF03466 LysR substrate binding domain RA8CHR_02109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02110 PF02515 CoA-transferase family III RA8CHR_02112 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02113 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_02115 PF02803 Thiolase, C-terminal domain RA8CHR_02115 PF00108 Thiolase, N-terminal domain RA8CHR_02118 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RA8CHR_02119 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8CHR_02122 PF00510 Cytochrome c oxidase subunit III RA8CHR_02127 PF01311 Bacterial export proteins, family 1 RA8CHR_02129 PF01313 Bacterial export proteins, family 3 RA8CHR_02130 PF00813 FliP family RA8CHR_02131 PF04347 Flagellar biosynthesis protein, FliO RA8CHR_02132 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RA8CHR_02132 PF16973 Flagellar motor switch protein FliN N-terminal RA8CHR_02133 PF02154 Flagellar motor switch protein FliM RA8CHR_02133 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RA8CHR_02134 PF03748 Flagellar basal body-associated protein FliL RA8CHR_02135 PF02120 Flagellar hook-length control protein FliK RA8CHR_02136 PF02050 Flagellar FliJ protein RA8CHR_02137 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA8CHR_02137 PF18269 T3SS EscN ATPase C-terminal domain RA8CHR_02138 PF02108 Flagellar assembly protein FliH RA8CHR_02139 PF01706 FliG C-terminal domain RA8CHR_02139 PF14842 FliG N-terminal domain RA8CHR_02139 PF14841 FliG middle domain RA8CHR_02140 PF08345 Flagellar M-ring protein C-terminal RA8CHR_02140 PF01514 Secretory protein of YscJ/FliF family RA8CHR_02141 PF02049 Flagellar hook-basal body complex protein FliE RA8CHR_02142 PF00669 Bacterial flagellin N-terminal helical region RA8CHR_02142 PF00700 Bacterial flagellin C-terminal helical region RA8CHR_02142 PF08884 Flagellin D3 domain RA8CHR_02143 PF03646 FlaG protein RA8CHR_02144 PF07195 Flagellar hook-associated protein 2 C-terminus RA8CHR_02144 PF02465 Flagellar hook-associated protein 2 N-terminus RA8CHR_02145 PF02561 Flagellar protein FliS RA8CHR_02148 PF01312 FlhB HrpN YscU SpaS Family RA8CHR_02149 PF05247 Flagellar transcriptional activator (FlhD) RA8CHR_02150 PF05280 Flagellar transcriptional activator (FlhC) RA8CHR_02151 PF01618 MotA/TolQ/ExbB proton channel family RA8CHR_02152 PF13677 Membrane MotB of proton-channel complex MotA/MotB RA8CHR_02152 PF00691 OmpA family RA8CHR_02153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02153 PF01627 Hpt domain RA8CHR_02153 PF01584 CheW-like domain RA8CHR_02153 PF02895 Signal transducing histidine kinase, homodimeric domain RA8CHR_02153 PF09078 CheY binding RA8CHR_02154 PF00563 EAL domain RA8CHR_02154 PF08668 HDOD domain RA8CHR_02155 PF01739 CheR methyltransferase, SAM binding domain RA8CHR_02155 PF03705 CheR methyltransferase, all-alpha domain RA8CHR_02157 PF03975 CheD chemotactic sensory transduction RA8CHR_02158 PF01339 CheB methylesterase RA8CHR_02158 PF00072 Response regulator receiver domain RA8CHR_02159 PF00072 Response regulator receiver domain RA8CHR_02160 PF04344 Chemotaxis phosphatase, CheZ RA8CHR_02164 PF01312 FlhB HrpN YscU SpaS Family RA8CHR_02165 PF00771 FHIPEP family RA8CHR_02166 PF00448 SRP54-type protein, GTPase domain RA8CHR_02168 PF04539 Sigma-70 region 3 RA8CHR_02168 PF04545 Sigma-70, region 4 RA8CHR_02168 PF04542 Sigma-70 region 2 RA8CHR_02172 PF12401 Protein of unknown function (DUF2662) RA8CHR_02172 PF00498 FHA domain RA8CHR_02176 PF13683 Integrase core domain RA8CHR_02176 PF13276 HTH-like domain RA8CHR_02177 PF01527 Transposase RA8CHR_02179 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RA8CHR_02180 PF11940 Domain of unknown function (DUF3458) Ig-like fold RA8CHR_02180 PF01433 Peptidase family M1 domain RA8CHR_02180 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RA8CHR_02181 PF00472 RF-1 domain RA8CHR_02181 PF03462 PCRF domain RA8CHR_02182 PF00561 alpha/beta hydrolase fold RA8CHR_02183 PF00248 Aldo/keto reductase family RA8CHR_02184 PF04073 Aminoacyl-tRNA editing domain RA8CHR_02185 PF02660 Glycerol-3-phosphate acyltransferase RA8CHR_02186 PF01042 Endoribonuclease L-PSP RA8CHR_02188 PF04461 Protein of unknown function (DUF520) RA8CHR_02189 PF01565 FAD binding domain RA8CHR_02189 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RA8CHR_02190 PF00764 Arginosuccinate synthase RA8CHR_02191 PF06865 Pyrimidine/purine nucleoside phosphorylase RA8CHR_02193 PF03960 ArsC family RA8CHR_02194 PF02875 Mur ligase family, glutamate ligase domain RA8CHR_02194 PF08245 Mur ligase middle domain RA8CHR_02197 PF00156 Phosphoribosyl transferase domain RA8CHR_02198 PF01053 Cys/Met metabolism PLP-dependent enzyme RA8CHR_02199 PF00749 tRNA synthetases class I (E and Q), catalytic domain RA8CHR_02204 PF00501 AMP-binding enzyme RA8CHR_02204 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02205 PF02803 Thiolase, C-terminal domain RA8CHR_02205 PF00108 Thiolase, N-terminal domain RA8CHR_02207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02207 PF03466 LysR substrate binding domain RA8CHR_02208 PF00149 Calcineurin-like phosphoesterase RA8CHR_02209 PF00781 Diacylglycerol kinase catalytic domain RA8CHR_02211 PF01799 [2Fe-2S] binding domain RA8CHR_02211 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_02212 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_02212 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_02213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02213 PF03466 LysR substrate binding domain RA8CHR_02214 PF00860 Permease family RA8CHR_02218 PF02608 ABC transporter substrate-binding protein PnrA-like RA8CHR_02219 PF00355 Rieske [2Fe-2S] domain RA8CHR_02220 PF00962 Adenosine/AMP deaminase RA8CHR_02223 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_02223 PF03707 Bacterial signalling protein N terminal repeat RA8CHR_02223 PF00563 EAL domain RA8CHR_02224 PF00437 Type II/IV secretion system protein RA8CHR_02224 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RA8CHR_02225 PF00563 EAL domain RA8CHR_02225 PF08495 FIST N domain RA8CHR_02225 PF10442 FIST C domain RA8CHR_02225 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_02226 PF02608 ABC transporter substrate-binding protein PnrA-like RA8CHR_02228 PF13439 Glycosyltransferase Family 4 RA8CHR_02228 PF00534 Glycosyl transferases group 1 RA8CHR_02229 PF01979 Amidohydrolase family RA8CHR_02230 PF00692 dUTPase RA8CHR_02231 PF04228 Putative neutral zinc metallopeptidase RA8CHR_02232 PF00271 Helicase conserved C-terminal domain RA8CHR_02232 PF00270 DEAD/DEAH box helicase RA8CHR_02233 PF00149 Calcineurin-like phosphoesterase RA8CHR_02234 PF03741 Integral membrane protein TerC family RA8CHR_02234 PF03471 Transporter associated domain RA8CHR_02236 PF03466 LysR substrate binding domain RA8CHR_02236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02237 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02243 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_02243 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_02244 PF01261 Xylose isomerase-like TIM barrel RA8CHR_02245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_02245 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_02245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_02246 PF03466 LysR substrate binding domain RA8CHR_02246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02247 PF00672 HAMP domain RA8CHR_02247 PF02203 Tar ligand binding domain homologue RA8CHR_02247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_02249 PF00150 Cellulase (glycosyl hydrolase family 5) RA8CHR_02256 PF01594 AI-2E family transporter RA8CHR_02257 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_02257 PF07729 FCD domain RA8CHR_02258 PF00375 Sodium:dicarboxylate symporter family RA8CHR_02262 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02267 PF03466 LysR substrate binding domain RA8CHR_02267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02268 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02269 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RA8CHR_02269 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RA8CHR_02270 PF05853 beta-keto acid cleavage enzyme RA8CHR_02277 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02277 PF00501 AMP-binding enzyme RA8CHR_02278 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_02279 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_02279 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_02280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_02281 PF03466 LysR substrate binding domain RA8CHR_02281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02282 PF03466 LysR substrate binding domain RA8CHR_02282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02283 PF13533 Biotin-lipoyl like RA8CHR_02284 PF00873 AcrB/AcrD/AcrF family RA8CHR_02285 PF00873 AcrB/AcrD/AcrF family RA8CHR_02286 PF02321 Outer membrane efflux protein RA8CHR_02287 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_02288 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_02288 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_02289 PF03358 NADPH-dependent FMN reductase RA8CHR_02293 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_02294 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_02296 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_02297 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_02298 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_02301 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_02304 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02305 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02307 PF00107 Zinc-binding dehydrogenase RA8CHR_02307 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_02308 PF00561 alpha/beta hydrolase fold RA8CHR_02309 PF13378 Enolase C-terminal domain-like RA8CHR_02309 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_02310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_02310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_02311 PF13378 Enolase C-terminal domain-like RA8CHR_02311 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_02313 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_02313 PF07702 UTRA domain RA8CHR_02314 PF03466 LysR substrate binding domain RA8CHR_02314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02316 PF01266 FAD dependent oxidoreductase RA8CHR_02318 PF07687 Peptidase dimerisation domain RA8CHR_02318 PF01546 Peptidase family M20/M25/M40 RA8CHR_02319 PF01037 Lrp/AsnC ligand binding domain RA8CHR_02320 PF00202 Aminotransferase class-III RA8CHR_02321 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_02325 PF01266 FAD dependent oxidoreductase RA8CHR_02326 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_02327 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02328 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_02328 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02329 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_02329 PF00005 ABC transporter RA8CHR_02330 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_02331 PF00171 Aldehyde dehydrogenase family RA8CHR_02332 PF01266 FAD dependent oxidoreductase RA8CHR_02333 PF00171 Aldehyde dehydrogenase family RA8CHR_02334 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02335 PF00884 Sulfatase RA8CHR_02335 PF12411 Choline sulfatase enzyme C terminal RA8CHR_02336 PF03466 LysR substrate binding domain RA8CHR_02336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02337 PF01565 FAD binding domain RA8CHR_02337 PF02913 FAD linked oxidases, C-terminal domain RA8CHR_02342 PF02515 CoA-transferase family III RA8CHR_02343 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8CHR_02344 PF10397 Adenylosuccinate lyase C-terminus RA8CHR_02344 PF00206 Lyase RA8CHR_02345 PF03466 LysR substrate binding domain RA8CHR_02345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02346 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02347 PF04303 PrpF protein RA8CHR_02348 PF13609 Gram-negative porin RA8CHR_02349 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_02350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_02351 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_02352 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_02352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_02352 PF01842 ACT domain RA8CHR_02353 PF04909 Amidohydrolase RA8CHR_02354 PF13180 PDZ domain RA8CHR_02355 PF00582 Universal stress protein family RA8CHR_02363 PF00011 Hsp20/alpha crystallin family RA8CHR_02365 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_02365 PF01434 Peptidase family M41 RA8CHR_02365 PF17862 AAA+ lid domain RA8CHR_02366 PF13180 PDZ domain RA8CHR_02368 PF02896 PEP-utilising enzyme, TIM barrel domain RA8CHR_02368 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RA8CHR_02368 PF00391 PEP-utilising enzyme, mobile domain RA8CHR_02369 PF00582 Universal stress protein family RA8CHR_02370 PF01738 Dienelactone hydrolase family RA8CHR_02370 PF00156 Phosphoribosyl transferase domain RA8CHR_02372 PF00005 ABC transporter RA8CHR_02373 PF12704 MacB-like periplasmic core domain RA8CHR_02373 PF02687 FtsX-like permease family RA8CHR_02374 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_02375 PF03706 Lysylphosphatidylglycerol synthase TM region RA8CHR_02376 PF00689 Cation transporting ATPase, C-terminus RA8CHR_02376 PF00690 Cation transporter/ATPase, N-terminus RA8CHR_02381 PF00501 AMP-binding enzyme RA8CHR_02383 PF05139 Erythromycin esterase RA8CHR_02383 PF00156 Phosphoribosyl transferase domain RA8CHR_02384 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02384 PF00501 AMP-binding enzyme RA8CHR_02385 PF00676 Dehydrogenase E1 component RA8CHR_02386 PF02780 Transketolase, C-terminal domain RA8CHR_02386 PF02779 Transketolase, pyrimidine binding domain RA8CHR_02386 PF00364 Biotin-requiring enzyme RA8CHR_02387 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA8CHR_02388 PF00550 Phosphopantetheine attachment site RA8CHR_02389 PF01226 Formate/nitrite transporter RA8CHR_02391 PF00108 Thiolase, N-terminal domain RA8CHR_02391 PF02803 Thiolase, C-terminal domain RA8CHR_02392 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RA8CHR_02392 PF14572 Phosphoribosyl synthetase-associated domain RA8CHR_02394 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RA8CHR_02396 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_02396 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_02396 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_02397 PF00118 TCP-1/cpn60 chaperonin family RA8CHR_02400 PF00753 Metallo-beta-lactamase superfamily RA8CHR_02406 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_02406 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_02406 PF17871 AAA lid domain RA8CHR_02406 PF02861 Clp amino terminal domain, pathogenicity island component RA8CHR_02406 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_02407 PF11897 Protein of unknown function (DUF3417) RA8CHR_02407 PF00343 Carbohydrate phosphorylase RA8CHR_02409 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_02409 PF00072 Response regulator receiver domain RA8CHR_02410 PF08521 Two-component sensor kinase N-terminal RA8CHR_02410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02410 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02414 PF00501 AMP-binding enzyme RA8CHR_02417 PF00005 ABC transporter RA8CHR_02418 PF02687 FtsX-like permease family RA8CHR_02418 PF12704 MacB-like periplasmic core domain RA8CHR_02420 PF00929 Exonuclease RA8CHR_02421 PF00072 Response regulator receiver domain RA8CHR_02421 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_02422 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02422 PF00672 HAMP domain RA8CHR_02425 PF00474 Sodium:solute symporter family RA8CHR_02426 PF04341 Protein of unknown function, DUF485 RA8CHR_02430 PF03477 ATP cone domain RA8CHR_02430 PF02867 Ribonucleotide reductase, barrel domain RA8CHR_02430 PF00317 Ribonucleotide reductase, all-alpha domain RA8CHR_02432 PF07730 Histidine kinase RA8CHR_02432 PF00672 HAMP domain RA8CHR_02432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02432 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RA8CHR_02433 PF00072 Response regulator receiver domain RA8CHR_02433 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_02434 PF07690 Major Facilitator Superfamily RA8CHR_02435 PF07690 Major Facilitator Superfamily RA8CHR_02436 PF14710 Respiratory nitrate reductase alpha N-terminal RA8CHR_02436 PF01568 Molydopterin dinucleotide binding domain RA8CHR_02436 PF00384 Molybdopterin oxidoreductase RA8CHR_02437 PF13247 4Fe-4S dicluster domain RA8CHR_02437 PF14711 Respiratory nitrate reductase beta C-terminal RA8CHR_02438 PF02613 Nitrate reductase delta subunit RA8CHR_02439 PF02665 Nitrate reductase gamma subunit RA8CHR_02440 PF09312 SurA N-terminal domain RA8CHR_02440 PF00639 PPIC-type PPIASE domain RA8CHR_02445 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02445 PF00501 AMP-binding enzyme RA8CHR_02445 PF16177 Acetyl-coenzyme A synthetase N-terminus RA8CHR_02446 PF00582 Universal stress protein family RA8CHR_02448 PF01565 FAD binding domain RA8CHR_02448 PF08031 Berberine and berberine like RA8CHR_02449 PF08448 PAS fold RA8CHR_02449 PF13188 PAS domain RA8CHR_02449 PF00072 Response regulator receiver domain RA8CHR_02449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02449 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02459 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_02459 PF00072 Response regulator receiver domain RA8CHR_02461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02461 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02461 PF07689 KaiB domain RA8CHR_02467 PF04055 Radical SAM superfamily RA8CHR_02468 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_02468 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_02469 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_02469 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_02470 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_02470 PF01799 [2Fe-2S] binding domain RA8CHR_02470 PF10518 TAT (twin-arginine translocation) pathway signal sequence RA8CHR_02471 PF12833 Helix-turn-helix domain RA8CHR_02471 PF01965 DJ-1/PfpI family RA8CHR_02472 PF07690 Major Facilitator Superfamily RA8CHR_02474 PF02627 Carboxymuconolactone decarboxylase family RA8CHR_02475 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02476 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_02477 PF03466 LysR substrate binding domain RA8CHR_02477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02479 PF03466 LysR substrate binding domain RA8CHR_02479 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_02482 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02486 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02488 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02490 PF00248 Aldo/keto reductase family RA8CHR_02491 PF00860 Permease family RA8CHR_02492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02492 PF03466 LysR substrate binding domain RA8CHR_02495 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02496 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_02496 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_02497 PF00708 Acylphosphatase RA8CHR_02498 PF14307 Glycosyltransferase WbsX RA8CHR_02498 PF05045 Rhamnan synthesis protein F RA8CHR_02499 PF07687 Peptidase dimerisation domain RA8CHR_02499 PF01546 Peptidase family M20/M25/M40 RA8CHR_02500 PF07687 Peptidase dimerisation domain RA8CHR_02500 PF01546 Peptidase family M20/M25/M40 RA8CHR_02502 PF07729 FCD domain RA8CHR_02502 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_02503 PF00576 HIUase/Transthyretin family RA8CHR_02507 PF13660 Domain of unknown function (DUF4147) RA8CHR_02507 PF05161 MOFRL family RA8CHR_02509 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_02510 PF00005 ABC transporter RA8CHR_02513 PF02321 Outer membrane efflux protein RA8CHR_02517 PF00571 CBS domain RA8CHR_02519 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RA8CHR_02519 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RA8CHR_02519 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RA8CHR_02520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RA8CHR_02520 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_02520 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RA8CHR_02521 PF01638 HxlR-like helix-turn-helix RA8CHR_02522 PF08241 Methyltransferase domain RA8CHR_02523 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_02526 PF02515 CoA-transferase family III RA8CHR_02527 PF00682 HMGL-like RA8CHR_02528 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_02529 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02531 PF07519 Tannase and feruloyl esterase RA8CHR_02533 PF17755 UvrA DNA-binding domain RA8CHR_02535 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02539 PF07995 Glucose / Sorbosone dehydrogenase RA8CHR_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02540 PF03466 LysR substrate binding domain RA8CHR_02543 PF00069 Protein kinase domain RA8CHR_02543 PF03793 PASTA domain RA8CHR_02551 PF05736 OprF membrane domain RA8CHR_02551 PF00691 OmpA family RA8CHR_02561 PF08281 Sigma-70, region 4 RA8CHR_02561 PF04542 Sigma-70 region 2 RA8CHR_02566 PF00403 Heavy-metal-associated domain RA8CHR_02567 PF09278 MerR, DNA binding RA8CHR_02567 PF00376 MerR family regulatory protein RA8CHR_02568 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_02568 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA8CHR_02568 PF00034 Cytochrome c RA8CHR_02571 PF00892 EamA-like transporter family RA8CHR_02572 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RA8CHR_02572 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RA8CHR_02573 PF02805 Metal binding domain of Ada RA8CHR_02573 PF12833 Helix-turn-helix domain RA8CHR_02574 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RA8CHR_02574 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RA8CHR_02574 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RA8CHR_02574 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RA8CHR_02575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RA8CHR_02575 PF00534 Glycosyl transferases group 1 RA8CHR_02584 PF00873 AcrB/AcrD/AcrF family RA8CHR_02585 PF13533 Biotin-lipoyl like RA8CHR_02586 PF17922 Tetracyclin repressor-like, C-terminal domain RA8CHR_02586 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_02587 PF01625 Peptide methionine sulfoxide reductase RA8CHR_02591 PF01820 D-ala D-ala ligase N-terminus RA8CHR_02591 PF07478 D-ala D-ala ligase C-terminus RA8CHR_02592 PF00696 Amino acid kinase family RA8CHR_02592 PF13840 ACT domain RA8CHR_02592 PF01842 ACT domain RA8CHR_02593 PF00248 Aldo/keto reductase family RA8CHR_02594 PF03466 LysR substrate binding domain RA8CHR_02598 PF00920 Dehydratase family RA8CHR_02599 PF01081 KDPG and KHG aldolase RA8CHR_02601 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_02602 PF00005 ABC transporter RA8CHR_02602 PF08402 TOBE domain RA8CHR_02604 PF13416 Bacterial extracellular solute-binding protein RA8CHR_02605 PF00501 AMP-binding enzyme RA8CHR_02605 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02606 PF03060 Nitronate monooxygenase RA8CHR_02607 PF00106 short chain dehydrogenase RA8CHR_02608 PF01323 DSBA-like thioredoxin domain RA8CHR_02609 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02610 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02613 PF00561 alpha/beta hydrolase fold RA8CHR_02614 PF00005 ABC transporter RA8CHR_02615 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RA8CHR_02615 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_02616 PF01261 Xylose isomerase-like TIM barrel RA8CHR_02619 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02620 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02621 PF00294 pfkB family carbohydrate kinase RA8CHR_02623 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_02630 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_02631 PF01081 KDPG and KHG aldolase RA8CHR_02633 PF00920 Dehydratase family RA8CHR_02634 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_02634 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_02635 PF07729 FCD domain RA8CHR_02635 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_02637 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02638 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02639 PF00005 ABC transporter RA8CHR_02639 PF03459 TOBE domain RA8CHR_02639 PF17912 MalK OB fold domain RA8CHR_02640 PF00270 DEAD/DEAH box helicase RA8CHR_02640 PF00271 Helicase conserved C-terminal domain RA8CHR_02642 PF00005 ABC transporter RA8CHR_02642 PF12848 ABC transporter RA8CHR_02643 PF07995 Glucose / Sorbosone dehydrogenase RA8CHR_02645 PF00072 Response regulator receiver domain RA8CHR_02645 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_02648 PF03576 Peptidase family S58 RA8CHR_02650 PF13411 MerR HTH family regulatory protein RA8CHR_02651 PF03009 Glycerophosphoryl diester phosphodiesterase family RA8CHR_02653 PF00005 ABC transporter RA8CHR_02654 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02655 PF00155 Aminotransferase class I and II RA8CHR_02656 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02657 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_02659 PF02566 OsmC-like protein RA8CHR_02660 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_02660 PF00501 AMP-binding enzyme RA8CHR_02663 PF00583 Acetyltransferase (GNAT) family RA8CHR_02664 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_02666 PF03781 Sulfatase-modifying factor enzyme 1 RA8CHR_02666 PF12867 DinB superfamily RA8CHR_02667 PF10017 Histidine-specific methyltransferase, SAM-dependent RA8CHR_02670 PF00582 Universal stress protein family RA8CHR_02671 PF00849 RNA pseudouridylate synthase RA8CHR_02673 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_02676 PF05661 Protein of unknown function (DUF808) RA8CHR_02677 PF00581 Rhodanese-like domain RA8CHR_02679 PF03797 Autotransporter beta-domain RA8CHR_02679 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_02679 PF16168 Adhesin of bacterial autotransporter system, probable stalk RA8CHR_02681 PF07690 Major Facilitator Superfamily RA8CHR_02682 PF02230 Phospholipase/Carboxylesterase RA8CHR_02683 PF04262 Glutamate-cysteine ligase RA8CHR_02684 PF02423 Ornithine cyclodeaminase/mu-crystallin family RA8CHR_02685 PF00072 Response regulator receiver domain RA8CHR_02687 PF13411 MerR HTH family regulatory protein RA8CHR_02688 PF01063 Amino-transferase class IV RA8CHR_02690 PF04397 LytTr DNA-binding domain RA8CHR_02690 PF00072 Response regulator receiver domain RA8CHR_02691 PF01926 50S ribosome-binding GTPase RA8CHR_02692 PF12680 SnoaL-like domain RA8CHR_02692 PF04542 Sigma-70 region 2 RA8CHR_02692 PF08281 Sigma-70, region 4 RA8CHR_02694 PF07690 Major Facilitator Superfamily RA8CHR_02696 PF14765 Polyketide synthase dehydratase RA8CHR_02696 PF00550 Phosphopantetheine attachment site RA8CHR_02696 PF08659 KR domain RA8CHR_02696 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_02696 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_02696 PF00107 Zinc-binding dehydrogenase RA8CHR_02696 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_02696 PF00698 Acyl transferase domain RA8CHR_02696 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_02697 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_02698 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02699 PF01070 FMN-dependent dehydrogenase RA8CHR_02700 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_02701 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_02704 PF01420 Type I restriction modification DNA specificity domain RA8CHR_02705 PF12161 HsdM N-terminal domain RA8CHR_02705 PF02384 N-6 DNA Methylase RA8CHR_02707 PF00749 tRNA synthetases class I (E and Q), catalytic domain RA8CHR_02707 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RA8CHR_02709 PF00072 Response regulator receiver domain RA8CHR_02709 PF04397 LytTr DNA-binding domain RA8CHR_02710 PF07694 5TMR of 5TMR-LYT RA8CHR_02710 PF06580 Histidine kinase RA8CHR_02713 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_02714 PF00873 AcrB/AcrD/AcrF family RA8CHR_02715 PF00873 AcrB/AcrD/AcrF family RA8CHR_02716 PF02321 Outer membrane efflux protein RA8CHR_02719 PF02673 Bacitracin resistance protein BacA RA8CHR_02724 PF05190 MutS family domain IV RA8CHR_02724 PF05192 MutS domain III RA8CHR_02724 PF05188 MutS domain II RA8CHR_02724 PF00488 MutS domain V RA8CHR_02724 PF01624 MutS domain I RA8CHR_02726 PF16385 Domain of unknown function RA8CHR_02726 PF00884 Sulfatase RA8CHR_02727 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02728 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02729 PF12802 MarR family RA8CHR_02730 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02731 PF03466 LysR substrate binding domain RA8CHR_02733 PF12805 FUSC-like inner membrane protein yccS RA8CHR_02734 PF00459 Inositol monophosphatase family RA8CHR_02735 PF00588 SpoU rRNA Methylase family RA8CHR_02736 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_02736 PF06426 Serine acetyltransferase, N-terminal RA8CHR_02737 PF00994 Probable molybdopterin binding domain RA8CHR_02738 PF04751 Protein of unknown function (DUF615) RA8CHR_02739 PF01523 Putative modulator of DNA gyrase RA8CHR_02741 PF01165 Ribosomal protein S21 RA8CHR_02744 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA8CHR_02745 PF02885 Glycosyl transferase family, helical bundle domain RA8CHR_02745 PF00591 Glycosyl transferase family, a/b domain RA8CHR_02746 PF00384 Molybdopterin oxidoreductase RA8CHR_02746 PF01568 Molydopterin dinucleotide binding domain RA8CHR_02746 PF04324 BFD-like [2Fe-2S] binding domain RA8CHR_02746 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8CHR_02747 PF00355 Rieske [2Fe-2S] domain RA8CHR_02748 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_02748 PF18267 Rubredoxin NAD+ reductase C-terminal domain RA8CHR_02748 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RA8CHR_02748 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA8CHR_02748 PF04324 BFD-like [2Fe-2S] binding domain RA8CHR_02749 PF00069 Protein kinase domain RA8CHR_02749 PF03793 PASTA domain RA8CHR_02750 PF07690 Major Facilitator Superfamily RA8CHR_02752 PF00005 ABC transporter RA8CHR_02753 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02755 PF03861 ANTAR domain RA8CHR_02755 PF08376 Nitrate and nitrite sensing RA8CHR_02756 PF00814 Glycoprotease family RA8CHR_02758 PF00011 Hsp20/alpha crystallin family RA8CHR_02759 PF13458 Periplasmic binding protein RA8CHR_02760 PF00155 Aminotransferase class I and II RA8CHR_02761 PF00312 Ribosomal protein S15 RA8CHR_02762 PF03725 3' exoribonuclease family, domain 2 RA8CHR_02762 PF00575 S1 RNA binding domain RA8CHR_02762 PF00013 KH domain RA8CHR_02762 PF01138 3' exoribonuclease family, domain 1 RA8CHR_02762 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RA8CHR_02763 PF00698 Acyl transferase domain RA8CHR_02763 PF14765 Polyketide synthase dehydratase RA8CHR_02763 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_02763 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_02763 PF00550 Phosphopantetheine attachment site RA8CHR_02763 PF08659 KR domain RA8CHR_02763 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_02763 PF00107 Zinc-binding dehydrogenase RA8CHR_02763 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_02764 PF00121 Triosephosphate isomerase RA8CHR_02765 PF03840 Preprotein translocase SecG subunit RA8CHR_02767 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RA8CHR_02768 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RA8CHR_02769 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RA8CHR_02770 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RA8CHR_02772 PF10531 SLBB domain RA8CHR_02772 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RA8CHR_02772 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RA8CHR_02773 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RA8CHR_02773 PF00384 Molybdopterin oxidoreductase RA8CHR_02773 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RA8CHR_02774 PF00146 NADH dehydrogenase RA8CHR_02775 PF12838 4Fe-4S dicluster domain RA8CHR_02776 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RA8CHR_02777 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RA8CHR_02778 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RA8CHR_02778 PF00361 Proton-conducting membrane transporter RA8CHR_02779 PF00361 Proton-conducting membrane transporter RA8CHR_02779 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RA8CHR_02780 PF00361 Proton-conducting membrane transporter RA8CHR_02783 PF00293 NUDIX domain RA8CHR_02785 PF00005 ABC transporter RA8CHR_02785 PF00664 ABC transporter transmembrane region RA8CHR_02786 PF01047 MarR family RA8CHR_02787 PF02321 Outer membrane efflux protein RA8CHR_02788 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_02788 PF00529 HlyD membrane-fusion protein of T1SS RA8CHR_02789 PF07690 Major Facilitator Superfamily RA8CHR_02790 PF00005 ABC transporter RA8CHR_02790 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_02791 PF00005 ABC transporter RA8CHR_02794 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_02800 PF01177 Asp/Glu/Hydantoin racemase RA8CHR_02801 PF01425 Amidase RA8CHR_02802 PF01979 Amidohydrolase family RA8CHR_02803 PF07690 Major Facilitator Superfamily RA8CHR_02803 PF00083 Sugar (and other) transporter RA8CHR_02805 PF00535 Glycosyl transferase family 2 RA8CHR_02811 PF00884 Sulfatase RA8CHR_02812 PF00175 Oxidoreductase NAD-binding domain RA8CHR_02812 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_02813 PF01425 Amidase RA8CHR_02814 PF02515 CoA-transferase family III RA8CHR_02815 PF17391 Urocanase N-terminal domain RA8CHR_02815 PF17392 Urocanase C-terminal domain RA8CHR_02815 PF01175 Urocanase Rossmann-like domain RA8CHR_02816 PF00698 Acyl transferase domain RA8CHR_02816 PF14765 Polyketide synthase dehydratase RA8CHR_02816 PF00550 Phosphopantetheine attachment site RA8CHR_02816 PF08659 KR domain RA8CHR_02816 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_02817 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_02818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02818 PF03466 LysR substrate binding domain RA8CHR_02819 PF13458 Periplasmic binding protein RA8CHR_02820 PF06545 Protein of unknown function (DUF1116) RA8CHR_02821 PF00005 ABC transporter RA8CHR_02822 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_02822 PF11862 Domain of unknown function (DUF3382) RA8CHR_02823 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_02825 PF00355 Rieske [2Fe-2S] domain RA8CHR_02827 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RA8CHR_02828 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_02828 PF07729 FCD domain RA8CHR_02830 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02831 PF02515 CoA-transferase family III RA8CHR_02832 PF03466 LysR substrate binding domain RA8CHR_02832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02834 PF00005 ABC transporter RA8CHR_02836 PF07690 Major Facilitator Superfamily RA8CHR_02838 PF01119 DNA mismatch repair protein, C-terminal domain RA8CHR_02838 PF08676 MutL C terminal dimerisation domain RA8CHR_02839 PF09335 SNARE associated Golgi protein RA8CHR_02842 PF11741 AMIN domain RA8CHR_02842 PF01520 N-acetylmuramoyl-L-alanine amidase RA8CHR_02843 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RA8CHR_02844 PF08331 Domain of unknown function (DUF1730) RA8CHR_02847 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02848 PF00589 Phage integrase family RA8CHR_02848 PF02899 Phage integrase, N-terminal SAM-like domain RA8CHR_02850 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_02855 PF04305 Protein of unknown function (DUF455) RA8CHR_02856 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_02857 PF01430 Hsp33 protein RA8CHR_02860 PF04977 Septum formation initiator RA8CHR_02861 PF00113 Enolase, C-terminal TIM barrel domain RA8CHR_02861 PF03952 Enolase, N-terminal domain RA8CHR_02863 PF00793 DAHP synthetase I family RA8CHR_02864 PF06418 CTP synthase N-terminus RA8CHR_02864 PF00117 Glutamine amidotransferase class-I RA8CHR_02865 PF02441 Flavoprotein RA8CHR_02865 PF04127 DNA / pantothenate metabolism flavoprotein RA8CHR_02867 PF00692 dUTPase RA8CHR_02870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_02871 PF08007 Cupin superfamily protein RA8CHR_02874 PF00753 Metallo-beta-lactamase superfamily RA8CHR_02875 PF06804 NlpB/DapX lipoprotein RA8CHR_02876 PF00701 Dihydrodipicolinate synthetase family RA8CHR_02880 PF00204 DNA gyrase B RA8CHR_02880 PF01751 Toprim domain RA8CHR_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02880 PF00986 DNA gyrase B subunit, carboxyl terminus RA8CHR_02882 PF04542 Sigma-70 region 2 RA8CHR_02882 PF08281 Sigma-70, region 4 RA8CHR_02883 PF01464 Transglycosylase SLT domain RA8CHR_02886 PF00521 DNA gyrase/topoisomerase IV, subunit A RA8CHR_02888 PF12706 Beta-lactamase superfamily domain RA8CHR_02891 PF00871 Acetokinase family RA8CHR_02893 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02894 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02896 PF00005 ABC transporter RA8CHR_02898 PF00294 pfkB family carbohydrate kinase RA8CHR_02899 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_02899 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_02900 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_02902 PF01850 PIN domain RA8CHR_02903 PF03435 Saccharopine dehydrogenase NADP binding domain RA8CHR_02903 PF16653 Saccharopine dehydrogenase C-terminal domain RA8CHR_02904 PF00171 Aldehyde dehydrogenase family RA8CHR_02905 PF01037 Lrp/AsnC ligand binding domain RA8CHR_02907 PF08379 Bacterial transglutaminase-like N-terminal region RA8CHR_02907 PF01841 Transglutaminase-like superfamily RA8CHR_02908 PF14403 Circularly permuted ATP-grasp type 2 RA8CHR_02908 PF04168 A predicted alpha-helical domain with a conserved ER motif. RA8CHR_02910 PF00753 Metallo-beta-lactamase superfamily RA8CHR_02910 PF03772 Competence protein RA8CHR_02911 PF14403 Circularly permuted ATP-grasp type 2 RA8CHR_02913 PF00664 ABC transporter transmembrane region RA8CHR_02913 PF03412 Peptidase C39 family RA8CHR_02913 PF00005 ABC transporter RA8CHR_02917 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA8CHR_02917 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA8CHR_02918 PF08220 DeoR-like helix-turn-helix domain RA8CHR_02918 PF00455 DeoR C terminal sensor domain RA8CHR_02919 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RA8CHR_02919 PF01266 FAD dependent oxidoreductase RA8CHR_02920 PF17912 MalK OB fold domain RA8CHR_02920 PF00005 ABC transporter RA8CHR_02921 PF17912 MalK OB fold domain RA8CHR_02921 PF00005 ABC transporter RA8CHR_02923 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02924 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_02929 PF13406 Transglycosylase SLT domain RA8CHR_02930 PF13559 Domain of unknown function (DUF4129) RA8CHR_02930 PF01841 Transglutaminase-like superfamily RA8CHR_02930 PF11992 Domain of unknown function (DUF3488) RA8CHR_02932 PF17863 AAA lid domain RA8CHR_02932 PF07726 ATPase family associated with various cellular activities (AAA) RA8CHR_02933 PF00850 Histone deacetylase domain RA8CHR_02934 PF12795 Mechanosensitive ion channel porin domain RA8CHR_02934 PF12794 Mechanosensitive ion channel inner membrane domain 1 RA8CHR_02934 PF00924 Mechanosensitive ion channel RA8CHR_02935 PF01012 Electron transfer flavoprotein domain RA8CHR_02936 PF00766 Electron transfer flavoprotein FAD-binding domain RA8CHR_02936 PF01012 Electron transfer flavoprotein domain RA8CHR_02937 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_02937 PF12806 Acetyl-CoA dehydrogenase C-terminal like RA8CHR_02937 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_02937 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_02941 PF00664 ABC transporter transmembrane region RA8CHR_02941 PF00005 ABC transporter RA8CHR_02942 PF00664 ABC transporter transmembrane region RA8CHR_02942 PF00005 ABC transporter RA8CHR_02943 PF01654 Cytochrome bd terminal oxidase subunit I RA8CHR_02944 PF02322 Cytochrome bd terminal oxidase subunit II RA8CHR_02945 PF08173 Membrane bound YbgT-like protein RA8CHR_02946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02946 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02946 PF00360 Phytochrome region RA8CHR_02946 PF01590 GAF domain RA8CHR_02946 PF08446 PAS fold RA8CHR_02947 PF00072 Response regulator receiver domain RA8CHR_02948 PF00072 Response regulator receiver domain RA8CHR_02948 PF13426 PAS domain RA8CHR_02948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02952 PF01264 Chorismate synthase RA8CHR_02954 PF08946 Osmosensory transporter coiled coil RA8CHR_02954 PF00083 Sugar (and other) transporter RA8CHR_02955 PF04072 Leucine carboxyl methyltransferase RA8CHR_02957 PF01614 Bacterial transcriptional regulator RA8CHR_02957 PF09339 IclR helix-turn-helix domain RA8CHR_02958 PF08501 Shikimate dehydrogenase substrate binding domain RA8CHR_02958 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA8CHR_02958 PF01488 Shikimate / quinate 5-dehydrogenase RA8CHR_02960 PF01488 Shikimate / quinate 5-dehydrogenase RA8CHR_02960 PF08501 Shikimate dehydrogenase substrate binding domain RA8CHR_02960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA8CHR_02961 PF10397 Adenylosuccinate lyase C-terminus RA8CHR_02961 PF00206 Lyase RA8CHR_02968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_02968 PF03466 LysR substrate binding domain RA8CHR_02969 PF06779 Uncharacterised MFS-type transporter YbfB RA8CHR_02972 PF04542 Sigma-70 region 2 RA8CHR_02972 PF08281 Sigma-70, region 4 RA8CHR_02973 PF03795 YCII-related domain RA8CHR_02976 PF01256 Carbohydrate kinase RA8CHR_02977 PF00300 Histidine phosphatase superfamily (branch 1) RA8CHR_02977 PF13456 Reverse transcriptase-like RA8CHR_02978 PF02347 Glycine cleavage system P-protein RA8CHR_02979 PF01597 Glycine cleavage H-protein RA8CHR_02980 PF01571 Aminomethyltransferase folate-binding domain RA8CHR_02980 PF08669 Glycine cleavage T-protein C-terminal barrel domain RA8CHR_02983 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_02985 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_02986 PF01370 NAD dependent epimerase/dehydratase family RA8CHR_02987 PF00989 PAS fold RA8CHR_02987 PF00072 Response regulator receiver domain RA8CHR_02987 PF01627 Hpt domain RA8CHR_02987 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_02987 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02993 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_02993 PF08521 Two-component sensor kinase N-terminal RA8CHR_02993 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_02994 PF00072 Response regulator receiver domain RA8CHR_02994 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_02996 PF00884 Sulfatase RA8CHR_02996 PF08019 Phosphoethanolamine transferase EptA/EptB RA8CHR_02998 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RA8CHR_02999 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RA8CHR_03000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_03000 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RA8CHR_03002 PF04349 Periplasmic glucan biosynthesis protein, MdoG RA8CHR_03003 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RA8CHR_03003 PF12833 Helix-turn-helix domain RA8CHR_03003 PF02805 Metal binding domain of Ada RA8CHR_03003 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RA8CHR_03004 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RA8CHR_03005 PF13532 2OG-Fe(II) oxygenase superfamily RA8CHR_03007 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03007 PF00072 Response regulator receiver domain RA8CHR_03008 PF01144 Coenzyme A transferase RA8CHR_03009 PF01144 Coenzyme A transferase RA8CHR_03010 PF02515 CoA-transferase family III RA8CHR_03014 PF00171 Aldehyde dehydrogenase family RA8CHR_03015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03015 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03016 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03017 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_03017 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_03018 PF17862 AAA+ lid domain RA8CHR_03018 PF06480 FtsH Extracellular RA8CHR_03018 PF01434 Peptidase family M41 RA8CHR_03018 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_03022 PF01556 DnaJ C terminal domain RA8CHR_03022 PF00226 DnaJ domain RA8CHR_03023 PF00300 Histidine phosphatase superfamily (branch 1) RA8CHR_03024 PF17874 MalT-like TPR region RA8CHR_03024 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03025 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03026 PF17874 MalT-like TPR region RA8CHR_03026 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03026 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03026 PF17874 MalT-like TPR region RA8CHR_03027 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03027 PF17874 MalT-like TPR region RA8CHR_03027 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03027 PF17874 MalT-like TPR region RA8CHR_03028 PF13091 PLD-like domain RA8CHR_03029 PF01066 CDP-alcohol phosphatidyltransferase RA8CHR_03030 PF01926 50S ribosome-binding GTPase RA8CHR_03030 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RA8CHR_03032 PF00682 HMGL-like RA8CHR_03033 PF00005 ABC transporter RA8CHR_03033 PF00664 ABC transporter transmembrane region RA8CHR_03034 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RA8CHR_03041 PF09828 Chromate resistance exported protein RA8CHR_03042 PF02417 Chromate transporter RA8CHR_03043 PF02417 Chromate transporter RA8CHR_03044 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8CHR_03046 PF13700 Domain of unknown function (DUF4158) RA8CHR_03046 PF01526 Tn3 transposase DDE domain RA8CHR_03049 PF01526 Tn3 transposase DDE domain RA8CHR_03049 PF13700 Domain of unknown function (DUF4158) RA8CHR_03051 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8CHR_03052 PF02417 Chromate transporter RA8CHR_03053 PF09828 Chromate resistance exported protein RA8CHR_03062 PF07733 Bacterial DNA polymerase III alpha NTPase domain RA8CHR_03062 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RA8CHR_03062 PF14579 Helix-hairpin-helix motif RA8CHR_03062 PF02811 PHP domain RA8CHR_03063 PF00355 Rieske [2Fe-2S] domain RA8CHR_03064 PF13458 Periplasmic binding protein RA8CHR_03066 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_03066 PF17938 Tetracyclin repressor-like, C-terminal domain RA8CHR_03075 PF14760 Rnk N-terminus RA8CHR_03075 PF01272 Transcription elongation factor, GreA/GreB, C-term RA8CHR_03076 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA8CHR_03076 PF18267 Rubredoxin NAD+ reductase C-terminal domain RA8CHR_03076 PF04324 BFD-like [2Fe-2S] binding domain RA8CHR_03076 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_03076 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RA8CHR_03077 PF13806 Rieske-like [2Fe-2S] domain RA8CHR_03078 PF01226 Formate/nitrite transporter RA8CHR_03079 PF07238 PilZ domain RA8CHR_03079 PF00069 Protein kinase domain RA8CHR_03081 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RA8CHR_03081 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA8CHR_03086 PF01411 tRNA synthetases class II (A) RA8CHR_03086 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RA8CHR_03086 PF02272 DHHA1 domain RA8CHR_03088 PF01266 FAD dependent oxidoreductase RA8CHR_03089 PF01464 Transglycosylase SLT domain RA8CHR_03089 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_03095 PF00561 alpha/beta hydrolase fold RA8CHR_03096 PF01614 Bacterial transcriptional regulator RA8CHR_03096 PF09339 IclR helix-turn-helix domain RA8CHR_03097 PF00106 short chain dehydrogenase RA8CHR_03098 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_03098 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_03098 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_03099 PF03447 Homoserine dehydrogenase, NAD binding domain RA8CHR_03099 PF01958 Domain of unknown function DUF108 RA8CHR_03100 PF00171 Aldehyde dehydrogenase family RA8CHR_03102 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03103 PF01494 FAD binding domain RA8CHR_03105 PF00355 Rieske [2Fe-2S] domain RA8CHR_03106 PF00970 Oxidoreductase FAD-binding domain RA8CHR_03106 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_03107 PF13609 Gram-negative porin RA8CHR_03111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03111 PF03466 LysR substrate binding domain RA8CHR_03114 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_03115 PF00689 Cation transporting ATPase, C-terminus RA8CHR_03115 PF00690 Cation transporter/ATPase, N-terminus RA8CHR_03118 PF01026 TatD related DNase RA8CHR_03120 PF09115 DNA polymerase III, delta subunit, C terminal RA8CHR_03121 PF02223 Thymidylate kinase RA8CHR_03122 PF02618 YceG-like family RA8CHR_03123 PF01571 Aminomethyltransferase folate-binding domain RA8CHR_03124 PF04328 Selenoprotein, putative RA8CHR_03125 PF02554 Carbon starvation protein CstA RA8CHR_03125 PF13722 5TM C-terminal transporter carbon starvation CstA RA8CHR_03127 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03127 PF00072 Response regulator receiver domain RA8CHR_03128 PF07730 Histidine kinase RA8CHR_03128 PF17200 Single Cache domain 2 RA8CHR_03130 PF07859 alpha/beta hydrolase fold RA8CHR_03131 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_03132 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03134 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_03135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_03137 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03137 PF03466 LysR substrate binding domain RA8CHR_03140 PF02374 Anion-transporting ATPase RA8CHR_03141 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03145 PF17674 HHH domain RA8CHR_03145 PF00575 S1 RNA binding domain RA8CHR_03145 PF09371 Tex-like protein N-terminal domain RA8CHR_03145 PF16921 Tex protein YqgF-like domain RA8CHR_03149 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_03149 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_03150 PF03466 LysR substrate binding domain RA8CHR_03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03151 PF03466 LysR substrate binding domain RA8CHR_03151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03156 PF01554 MatE RA8CHR_03161 PF00732 GMC oxidoreductase RA8CHR_03161 PF05199 GMC oxidoreductase RA8CHR_03164 PF07690 Major Facilitator Superfamily RA8CHR_03165 PF07690 Major Facilitator Superfamily RA8CHR_03166 PF07690 Major Facilitator Superfamily RA8CHR_03168 PF00690 Cation transporter/ATPase, N-terminus RA8CHR_03168 PF00689 Cation transporting ATPase, C-terminus RA8CHR_03169 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_03169 PF00107 Zinc-binding dehydrogenase RA8CHR_03173 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RA8CHR_03173 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RA8CHR_03175 PF02470 MlaD protein RA8CHR_03176 PF04403 Paraquat-inducible protein A RA8CHR_03177 PF04403 Paraquat-inducible protein A RA8CHR_03178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03178 PF03466 LysR substrate binding domain RA8CHR_03179 PF07690 Major Facilitator Superfamily RA8CHR_03180 PF00248 Aldo/keto reductase family RA8CHR_03181 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03181 PF00072 Response regulator receiver domain RA8CHR_03182 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03182 PF08521 Two-component sensor kinase N-terminal RA8CHR_03184 PF02525 Flavodoxin-like fold RA8CHR_03185 PF03466 LysR substrate binding domain RA8CHR_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03186 PF07237 Protein of unknown function (DUF1428) RA8CHR_03188 PF00106 short chain dehydrogenase RA8CHR_03190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03190 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03190 PF18158 Adaptive response protein AidB N-terminal domain RA8CHR_03191 PF00107 Zinc-binding dehydrogenase RA8CHR_03191 PF16884 N-terminal domain of oxidoreductase RA8CHR_03195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03195 PF12806 Acetyl-CoA dehydrogenase C-terminal like RA8CHR_03195 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03196 PF00108 Thiolase, N-terminal domain RA8CHR_03196 PF02803 Thiolase, C-terminal domain RA8CHR_03197 PF07687 Peptidase dimerisation domain RA8CHR_03197 PF01546 Peptidase family M20/M25/M40 RA8CHR_03198 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03198 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_03198 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_03199 PF00005 ABC transporter RA8CHR_03200 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_03200 PF00005 ABC transporter RA8CHR_03202 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_03204 PF00501 AMP-binding enzyme RA8CHR_03204 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_03205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA8CHR_03206 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RA8CHR_03207 PF01641 SelR domain RA8CHR_03208 PF04279 Intracellular septation protein A RA8CHR_03214 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RA8CHR_03214 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RA8CHR_03214 PF02769 AIR synthase related protein, C-terminal domain RA8CHR_03215 PF00557 Metallopeptidase family M24 RA8CHR_03216 PF01909 Nucleotidyltransferase domain RA8CHR_03216 PF01966 HD domain RA8CHR_03216 PF08335 GlnD PII-uridylyltransferase RA8CHR_03217 PF07681 DoxX RA8CHR_03218 PF01327 Polypeptide deformylase RA8CHR_03220 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RA8CHR_03220 PF00533 BRCA1 C Terminus (BRCT) domain RA8CHR_03220 PF01653 NAD-dependent DNA ligase adenylation domain RA8CHR_03220 PF12826 Helix-hairpin-helix motif RA8CHR_03220 PF03120 NAD-dependent DNA ligase OB-fold domain RA8CHR_03222 PF02463 RecF/RecN/SMC N terminal domain RA8CHR_03222 PF06470 SMC proteins Flexible Hinge Domain RA8CHR_03230 PF02600 Disulfide bond formation protein DsbB RA8CHR_03231 PF17850 CysA C-terminal regulatory domain RA8CHR_03231 PF12857 TOBE-like domain RA8CHR_03231 PF00005 ABC transporter RA8CHR_03232 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03233 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03236 PF03466 LysR substrate binding domain RA8CHR_03237 PF02525 Flavodoxin-like fold RA8CHR_03238 PF13657 HipA N-terminal domain RA8CHR_03238 PF07804 HipA-like C-terminal domain RA8CHR_03240 PF03358 NADPH-dependent FMN reductase RA8CHR_03241 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_03243 PF04362 Bacterial Fe(2+) trafficking RA8CHR_03244 PF01266 FAD dependent oxidoreductase RA8CHR_03244 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RA8CHR_03247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03247 PF03466 LysR substrate binding domain RA8CHR_03249 PF03006 Haemolysin-III related RA8CHR_03255 PF01507 Phosphoadenosine phosphosulfate reductase family RA8CHR_03256 PF01507 Phosphoadenosine phosphosulfate reductase family RA8CHR_03257 PF00009 Elongation factor Tu GTP binding domain RA8CHR_03258 PF11953 Domain of unknown function (DUF3470) RA8CHR_03258 PF00037 4Fe-4S binding domain RA8CHR_03259 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_03260 PF01569 PAP2 superfamily RA8CHR_03262 PF00034 Cytochrome c RA8CHR_03264 PF16177 Acetyl-coenzyme A synthetase N-terminus RA8CHR_03264 PF00501 AMP-binding enzyme RA8CHR_03264 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_03265 PF03350 Uncharacterized protein family, UPF0114 RA8CHR_03267 PF01220 Dehydroquinase class II RA8CHR_03268 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_03270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_03271 PF00206 Lyase RA8CHR_03271 PF10415 Fumarase C C-terminus RA8CHR_03273 PF01177 Asp/Glu/Hydantoin racemase RA8CHR_03280 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_03280 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_03280 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_03281 PF06689 ClpX C4-type zinc finger RA8CHR_03281 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_03281 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_03282 PF00574 Clp protease RA8CHR_03283 PF05698 Bacterial trigger factor protein (TF) C-terminus RA8CHR_03283 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_03283 PF05697 Bacterial trigger factor protein (TF) RA8CHR_03285 PF00873 AcrB/AcrD/AcrF family RA8CHR_03286 PF13533 Biotin-lipoyl like RA8CHR_03289 PF01593 Flavin containing amine oxidoreductase RA8CHR_03290 PF00072 Response regulator receiver domain RA8CHR_03290 PF00158 Sigma-54 interaction domain RA8CHR_03290 PF02954 Bacterial regulatory protein, Fis family RA8CHR_03298 PF13419 Haloacid dehalogenase-like hydrolase RA8CHR_03299 PF00762 Ferrochelatase RA8CHR_03304 PF00005 ABC transporter RA8CHR_03305 PF00005 ABC transporter RA8CHR_03305 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_03310 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03310 PF00072 Response regulator receiver domain RA8CHR_03312 PF02954 Bacterial regulatory protein, Fis family RA8CHR_03312 PF00072 Response regulator receiver domain RA8CHR_03312 PF00158 Sigma-54 interaction domain RA8CHR_03313 PF02321 Outer membrane efflux protein RA8CHR_03315 PF00873 AcrB/AcrD/AcrF family RA8CHR_03318 PF05139 Erythromycin esterase RA8CHR_03318 PF00156 Phosphoribosyl transferase domain RA8CHR_03320 PF01613 Flavin reductase like domain RA8CHR_03323 PF00296 Luciferase-like monooxygenase RA8CHR_03324 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03325 PF00296 Luciferase-like monooxygenase RA8CHR_03326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03326 PF03466 LysR substrate binding domain RA8CHR_03328 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03329 PF13380 CoA binding domain RA8CHR_03329 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_03330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03330 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03332 PF00106 short chain dehydrogenase RA8CHR_03335 PF03458 UPF0126 domain RA8CHR_03336 PF00027 Cyclic nucleotide-binding domain RA8CHR_03336 PF13545 Crp-like helix-turn-helix domain RA8CHR_03338 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_03340 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03341 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03341 PF00072 Response regulator receiver domain RA8CHR_03342 PF08521 Two-component sensor kinase N-terminal RA8CHR_03342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03342 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03343 PF01479 S4 domain RA8CHR_03344 PF03976 Polyphosphate kinase 2 (PPK2) RA8CHR_03346 PF01614 Bacterial transcriptional regulator RA8CHR_03346 PF09339 IclR helix-turn-helix domain RA8CHR_03353 PF13840 ACT domain RA8CHR_03353 PF00696 Amino acid kinase family RA8CHR_03353 PF01842 ACT domain RA8CHR_03354 PF09179 TilS substrate binding domain RA8CHR_03354 PF01171 PP-loop family RA8CHR_03355 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RA8CHR_03356 PF02805 Metal binding domain of Ada RA8CHR_03356 PF06029 AlkA N-terminal domain RA8CHR_03356 PF00730 HhH-GPD superfamily base excision DNA repair protein RA8CHR_03356 PF12833 Helix-turn-helix domain RA8CHR_03357 PF09190 DALR domain RA8CHR_03357 PF01406 tRNA synthetases class I (C) catalytic domain RA8CHR_03359 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RA8CHR_03360 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RA8CHR_03361 PF00149 Calcineurin-like phosphoesterase RA8CHR_03362 PF06167 Glucose-regulated metallo-peptidase M90 RA8CHR_03365 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RA8CHR_03365 PF01464 Transglycosylase SLT domain RA8CHR_03366 PF00464 Serine hydroxymethyltransferase RA8CHR_03367 PF03477 ATP cone domain RA8CHR_03371 PF05567 Neisseria PilC beta-propeller domain RA8CHR_03372 PF14245 Type IV pilin PilA RA8CHR_03372 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_03373 PF14245 Type IV pilin PilA RA8CHR_03373 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_03374 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA8CHR_03374 PF01872 RibD C-terminal domain RA8CHR_03375 PF00677 Lumazine binding domain RA8CHR_03376 PF00925 GTP cyclohydrolase II RA8CHR_03376 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RA8CHR_03377 PF00885 6,7-dimethyl-8-ribityllumazine synthase RA8CHR_03378 PF01029 NusB family RA8CHR_03379 PF00155 Aminotransferase class I and II RA8CHR_03380 PF03061 Thioesterase superfamily RA8CHR_03381 PF01618 MotA/TolQ/ExbB proton channel family RA8CHR_03382 PF02472 Biopolymer transport protein ExbD/TolR RA8CHR_03384 PF02811 PHP domain RA8CHR_03384 PF14579 Helix-hairpin-helix motif RA8CHR_03384 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RA8CHR_03384 PF07733 Bacterial DNA polymerase III alpha NTPase domain RA8CHR_03384 PF01336 OB-fold nucleic acid binding domain RA8CHR_03386 PF02678 Pirin RA8CHR_03386 PF05726 Pirin C-terminal cupin domain RA8CHR_03387 PF03358 NADPH-dependent FMN reductase RA8CHR_03388 PF07681 DoxX RA8CHR_03389 PF02678 Pirin RA8CHR_03389 PF17954 Quercetinase C-terminal cupin domain RA8CHR_03391 PF01593 Flavin containing amine oxidoreductase RA8CHR_03392 PF00749 tRNA synthetases class I (E and Q), catalytic domain RA8CHR_03393 PF02390 Putative methyltransferase RA8CHR_03396 PF02735 Ku70/Ku80 beta-barrel domain RA8CHR_03398 PF03466 LysR substrate binding domain RA8CHR_03398 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03399 PF01425 Amidase RA8CHR_03400 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03402 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_03403 PF07729 FCD domain RA8CHR_03403 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_03405 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03406 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_03406 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_03407 PF00171 Aldehyde dehydrogenase family RA8CHR_03408 PF12411 Choline sulfatase enzyme C terminal RA8CHR_03408 PF00884 Sulfatase RA8CHR_03409 PF02515 CoA-transferase family III RA8CHR_03410 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_03411 PF00672 HAMP domain RA8CHR_03411 PF02203 Tar ligand binding domain homologue RA8CHR_03414 PF16701 Adenylate cyclase regulatory domain RA8CHR_03414 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_03416 PF17676 LD-carboxypeptidase C-terminal domain RA8CHR_03416 PF02016 LD-carboxypeptidase N-terminal domain RA8CHR_03417 PF14437 MafB19-like deaminase RA8CHR_03422 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03422 PF00072 Response regulator receiver domain RA8CHR_03423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03423 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03423 PF00989 PAS fold RA8CHR_03424 PF00933 Glycosyl hydrolase family 3 N terminal domain RA8CHR_03424 PF01915 Glycosyl hydrolase family 3 C-terminal domain RA8CHR_03424 PF14310 Fibronectin type III-like domain RA8CHR_03426 PF07519 Tannase and feruloyl esterase RA8CHR_03427 PF00106 short chain dehydrogenase RA8CHR_03428 PF05853 beta-keto acid cleavage enzyme RA8CHR_03429 PF00005 ABC transporter RA8CHR_03430 PF00005 ABC transporter RA8CHR_03430 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_03432 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_03433 PF13458 Periplasmic binding protein RA8CHR_03436 PF00135 Carboxylesterase family RA8CHR_03438 PF03466 LysR substrate binding domain RA8CHR_03438 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03439 PF00583 Acetyltransferase (GNAT) family RA8CHR_03439 PF13380 CoA binding domain RA8CHR_03439 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_03440 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03440 PF00072 Response regulator receiver domain RA8CHR_03443 PF00083 Sugar (and other) transporter RA8CHR_03443 PF07690 Major Facilitator Superfamily RA8CHR_03444 PF06481 COX Aromatic Rich Motif RA8CHR_03444 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RA8CHR_03445 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8CHR_03446 PF00510 Cytochrome c oxidase subunit III RA8CHR_03447 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RA8CHR_03449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03449 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03450 PF00072 Response regulator receiver domain RA8CHR_03454 PF13191 AAA ATPase domain RA8CHR_03454 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03455 PF03466 LysR substrate binding domain RA8CHR_03456 PF02515 CoA-transferase family III RA8CHR_03457 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03458 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03459 PF00958 GMP synthase C terminal domain RA8CHR_03459 PF00117 Glutamine amidotransferase class-I RA8CHR_03459 PF02540 NAD synthase RA8CHR_03460 PF00478 IMP dehydrogenase / GMP reductase domain RA8CHR_03460 PF00571 CBS domain RA8CHR_03462 PF03658 RnfH family Ubiquitin RA8CHR_03463 PF03364 Polyketide cyclase / dehydrase and lipid transport RA8CHR_03464 PF01668 SmpB protein RA8CHR_03466 PF04542 Sigma-70 region 2 RA8CHR_03466 PF08281 Sigma-70, region 4 RA8CHR_03472 PF16198 tRNA pseudouridylate synthase B C-terminal domain RA8CHR_03472 PF01509 TruB family pseudouridylate synthase (N terminal domain) RA8CHR_03473 PF02033 Ribosome-binding factor A RA8CHR_03474 PF11987 Translation-initiation factor 2 RA8CHR_03474 PF04760 Translation initiation factor IF-2, N-terminal region RA8CHR_03474 PF08364 Bacterial translation initiation factor IF-2 associated region RA8CHR_03474 PF00009 Elongation factor Tu GTP binding domain RA8CHR_03475 PF08529 NusA N-terminal domain RA8CHR_03475 PF13184 NusA-like KH domain RA8CHR_03476 PF02576 RimP N-terminal domain RA8CHR_03477 PF06779 Uncharacterised MFS-type transporter YbfB RA8CHR_03478 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_03478 PF00005 ABC transporter RA8CHR_03479 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_03479 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03480 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03481 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_03483 PF14743 DNA ligase OB-like domain RA8CHR_03483 PF01068 ATP dependent DNA ligase domain RA8CHR_03484 PF02469 Fasciclin domain RA8CHR_03485 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RA8CHR_03485 PF01276 Orn/Lys/Arg decarboxylase, major domain RA8CHR_03485 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RA8CHR_03487 PF01145 SPFH domain / Band 7 family RA8CHR_03491 PF13458 Periplasmic binding protein RA8CHR_03494 PF02789 Cytosol aminopeptidase family, N-terminal domain RA8CHR_03494 PF00883 Cytosol aminopeptidase family, catalytic domain RA8CHR_03498 PF03466 LysR substrate binding domain RA8CHR_03498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03499 PF00155 Aminotransferase class I and II RA8CHR_03501 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RA8CHR_03501 PF00270 DEAD/DEAH box helicase RA8CHR_03501 PF04408 Helicase associated domain (HA2) RA8CHR_03501 PF11898 Domain of unknown function (DUF3418) RA8CHR_03501 PF00271 Helicase conserved C-terminal domain RA8CHR_03502 PF00696 Amino acid kinase family RA8CHR_03502 PF00583 Acetyltransferase (GNAT) family RA8CHR_03503 PF00155 Aminotransferase class I and II RA8CHR_03504 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RA8CHR_03504 PF14602 Hexapeptide repeat of succinyl-transferase RA8CHR_03504 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_03505 PF00437 Type II/IV secretion system protein RA8CHR_03506 PF01546 Peptidase family M20/M25/M40 RA8CHR_03506 PF07687 Peptidase dimerisation domain RA8CHR_03507 PF05175 Methyltransferase small domain RA8CHR_03515 PF01144 Coenzyme A transferase RA8CHR_03516 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03516 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03516 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03517 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA8CHR_03517 PF08501 Shikimate dehydrogenase substrate binding domain RA8CHR_03518 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA8CHR_03518 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA8CHR_03519 PF01614 Bacterial transcriptional regulator RA8CHR_03519 PF09339 IclR helix-turn-helix domain RA8CHR_03520 PF14537 Cytochrome c3 RA8CHR_03520 PF00890 FAD binding domain RA8CHR_03521 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03529 PF04909 Amidohydrolase RA8CHR_03532 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_03532 PF00005 ABC transporter RA8CHR_03533 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_03534 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03535 PF02515 CoA-transferase family III RA8CHR_03536 PF00890 FAD binding domain RA8CHR_03542 PF01614 Bacterial transcriptional regulator RA8CHR_03542 PF09339 IclR helix-turn-helix domain RA8CHR_03544 PF00005 ABC transporter RA8CHR_03545 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03547 PF00364 Biotin-requiring enzyme RA8CHR_03547 PF02436 Conserved carboxylase domain RA8CHR_03547 PF00682 HMGL-like RA8CHR_03548 PF02785 Biotin carboxylase C-terminal domain RA8CHR_03548 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_03548 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_03549 PF00364 Biotin-requiring enzyme RA8CHR_03550 PF05853 beta-keto acid cleavage enzyme RA8CHR_03552 PF01850 PIN domain RA8CHR_03554 PF00899 ThiF family RA8CHR_03556 PF00691 OmpA family RA8CHR_03557 PF07676 WD40-like Beta Propeller Repeat RA8CHR_03557 PF04052 TolB amino-terminal domain RA8CHR_03558 PF00005 ABC transporter RA8CHR_03558 PF00664 ABC transporter transmembrane region RA8CHR_03560 PF10150 Ribonuclease E/G family RA8CHR_03560 PF00575 S1 RNA binding domain RA8CHR_03561 PF02545 Maf-like protein RA8CHR_03562 PF02590 Predicted SPOUT methyltransferase RA8CHR_03564 PF01467 Cytidylyltransferase-like RA8CHR_03565 PF01218 Coproporphyrinogen III oxidase RA8CHR_03566 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RA8CHR_03566 PF02843 Phosphoribosylglycinamide synthetase, C domain RA8CHR_03566 PF02844 Phosphoribosylglycinamide synthetase, N domain RA8CHR_03567 PF01709 Transcriptional regulator RA8CHR_03575 PF01522 Polysaccharide deacetylase RA8CHR_03575 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain RA8CHR_03579 PF07977 FabA-like domain RA8CHR_03582 PF05872 Bacterial protein of unknown function (DUF853) RA8CHR_03583 PF06532 Negative regulator of sigma F RA8CHR_03584 PF04542 Sigma-70 region 2 RA8CHR_03584 PF08281 Sigma-70, region 4 RA8CHR_03586 PF05114 Protein of unknown function (DUF692) RA8CHR_03592 PF02608 ABC transporter substrate-binding protein PnrA-like RA8CHR_03596 PF07969 Amidohydrolase family RA8CHR_03597 PF08411 Exonuclease C-terminal RA8CHR_03597 PF00929 Exonuclease RA8CHR_03598 PF13396 Phospholipase_D-nuclease N-terminal RA8CHR_03598 PF13091 PLD-like domain RA8CHR_03599 PF17871 AAA lid domain RA8CHR_03599 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_03599 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_03599 PF02861 Clp amino terminal domain, pathogenicity island component RA8CHR_03599 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_03600 PF02617 ATP-dependent Clp protease adaptor protein ClpS RA8CHR_03601 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_03604 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RA8CHR_03604 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8CHR_03605 PF02601 Exonuclease VII, large subunit RA8CHR_03605 PF13742 OB-fold nucleic acid binding domain RA8CHR_03606 PF01618 MotA/TolQ/ExbB proton channel family RA8CHR_03607 PF02472 Biopolymer transport protein ExbD/TolR RA8CHR_03608 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RA8CHR_03609 PF03966 Trm112p-like protein RA8CHR_03610 PF02348 Cytidylyltransferase RA8CHR_03611 PF05191 Adenylate kinase, active site lid RA8CHR_03614 PF00710 Asparaginase, N-terminal RA8CHR_03614 PF17763 Glutaminase/Asparaginase C-terminal domain RA8CHR_03615 PF00717 Peptidase S24-like RA8CHR_03615 PF01726 LexA DNA binding domain RA8CHR_03617 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_03617 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_03617 PF01842 ACT domain RA8CHR_03618 PF07690 Major Facilitator Superfamily RA8CHR_03620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_03620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_03620 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RA8CHR_03621 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03622 PF13545 Crp-like helix-turn-helix domain RA8CHR_03622 PF00027 Cyclic nucleotide-binding domain RA8CHR_03624 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03624 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03624 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03626 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RA8CHR_03626 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RA8CHR_03626 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RA8CHR_03626 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RA8CHR_03627 PF00809 Pterin binding enzyme RA8CHR_03628 PF06480 FtsH Extracellular RA8CHR_03628 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_03628 PF01434 Peptidase family M41 RA8CHR_03628 PF17862 AAA+ lid domain RA8CHR_03629 PF01728 FtsJ-like methyltransferase RA8CHR_03630 PF01985 CRS1 / YhbY (CRM) domain RA8CHR_03633 PF03449 Transcription elongation factor, N-terminal RA8CHR_03633 PF01272 Transcription elongation factor, GreA/GreB, C-term RA8CHR_03635 PF02142 MGS-like domain RA8CHR_03635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RA8CHR_03635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_03636 PF00117 Glutamine amidotransferase class-I RA8CHR_03636 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RA8CHR_03637 PF00588 SpoU rRNA Methylase family RA8CHR_03637 PF08032 RNA 2'-O ribose methyltransferase substrate binding RA8CHR_03638 PF01351 Ribonuclease HII RA8CHR_03639 PF02684 Lipid-A-disaccharide synthetase RA8CHR_03640 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_03640 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RA8CHR_03641 PF07977 FabA-like domain RA8CHR_03642 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RA8CHR_03642 PF14602 Hexapeptide repeat of succinyl-transferase RA8CHR_03642 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_03644 PF07244 Surface antigen variable number repeat RA8CHR_03644 PF01103 Surface antigen RA8CHR_03645 PF17820 PDZ domain RA8CHR_03645 PF02163 Peptidase family M50 RA8CHR_03646 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RA8CHR_03646 PF13288 DXP reductoisomerase C-terminal domain RA8CHR_03646 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RA8CHR_03648 PF01255 Putative undecaprenyl diphosphate synthase RA8CHR_03649 PF01765 Ribosome recycling factor RA8CHR_03650 PF00696 Amino acid kinase family RA8CHR_03651 PF00889 Elongation factor TS RA8CHR_03652 PF00318 Ribosomal protein S2 RA8CHR_03653 PF01425 Amidase RA8CHR_03654 PF01266 FAD dependent oxidoreductase RA8CHR_03655 PF01256 Carbohydrate kinase RA8CHR_03655 PF03853 YjeF-related protein N-terminus RA8CHR_03657 PF00773 RNB domain RA8CHR_03657 PF00575 S1 RNA binding domain RA8CHR_03657 PF08206 Ribonuclease B OB domain RA8CHR_03657 PF17876 Cold shock domain RA8CHR_03657 PF08461 Ribonuclease R winged-helix domain RA8CHR_03659 PF00919 Uncharacterized protein family UPF0004 RA8CHR_03659 PF04055 Radical SAM superfamily RA8CHR_03659 PF18693 TRAM domain RA8CHR_03660 PF05233 PHB accumulation regulatory domain RA8CHR_03660 PF07879 PHB/PHA accumulation regulator DNA-binding domain RA8CHR_03663 PF04607 Region found in RelA / SpoT proteins RA8CHR_03663 PF13291 ACT domain RA8CHR_03663 PF02824 TGS domain RA8CHR_03664 PF00106 short chain dehydrogenase RA8CHR_03667 PF00072 Response regulator receiver domain RA8CHR_03667 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03668 PF00672 HAMP domain RA8CHR_03668 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03669 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RA8CHR_03669 PF02542 YgbB family RA8CHR_03670 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RA8CHR_03670 PF02542 YgbB family RA8CHR_03671 PF00270 DEAD/DEAH box helicase RA8CHR_03671 PF03461 TRCF domain RA8CHR_03671 PF00271 Helicase conserved C-terminal domain RA8CHR_03671 PF02559 CarD-like/TRCF domain RA8CHR_03671 PF17757 UvrB interaction domain RA8CHR_03673 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03675 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_03677 PF00155 Aminotransferase class I and II RA8CHR_03678 PF00730 HhH-GPD superfamily base excision DNA repair protein RA8CHR_03678 PF10576 Iron-sulfur binding domain of endonuclease III RA8CHR_03678 PF00633 Helix-hairpin-helix motif RA8CHR_03679 PF03972 MmgE/PrpD family RA8CHR_03680 PF13380 CoA binding domain RA8CHR_03680 PF13607 Succinyl-CoA ligase like flavodoxin domain RA8CHR_03681 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03682 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03683 PF09339 IclR helix-turn-helix domain RA8CHR_03684 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03685 PF12697 Alpha/beta hydrolase family RA8CHR_03686 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03686 PF03466 LysR substrate binding domain RA8CHR_03687 PF04909 Amidohydrolase RA8CHR_03689 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03693 PF02654 Cobalamin-5-phosphate synthase RA8CHR_03694 PF02277 Phosphoribosyltransferase RA8CHR_03695 PF07685 CobB/CobQ-like glutamine amidotransferase domain RA8CHR_03695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RA8CHR_03697 PF02321 Outer membrane efflux protein RA8CHR_03698 PF00873 AcrB/AcrD/AcrF family RA8CHR_03699 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_03699 PF00529 HlyD membrane-fusion protein of T1SS RA8CHR_03701 PF03466 LysR substrate binding domain RA8CHR_03701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03702 PF00155 Aminotransferase class I and II RA8CHR_03703 PF03186 CobD/Cbib protein RA8CHR_03704 PF12557 Cob(I)alamin adenosyltransferase N terminal RA8CHR_03704 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RA8CHR_03705 PF00005 ABC transporter RA8CHR_03706 PF01032 FecCD transport family RA8CHR_03707 PF01497 Periplasmic binding protein RA8CHR_03708 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RA8CHR_03709 PF07715 TonB-dependent Receptor Plug Domain RA8CHR_03709 PF00593 TonB dependent receptor RA8CHR_03713 PF01925 Sulfite exporter TauE/SafE RA8CHR_03716 PF00795 Carbon-nitrogen hydrolase RA8CHR_03717 PF13816 Haem-containing dehydratase RA8CHR_03718 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_03718 PF00501 AMP-binding enzyme RA8CHR_03719 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03720 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03722 PF07729 FCD domain RA8CHR_03722 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_03724 PF01790 Prolipoprotein diacylglyceryl transferase RA8CHR_03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03725 PF03466 LysR substrate binding domain RA8CHR_03726 PF00920 Dehydratase family RA8CHR_03728 PF08543 Phosphomethylpyrimidine kinase RA8CHR_03729 PF01266 FAD dependent oxidoreductase RA8CHR_03731 PF05690 Thiazole biosynthesis protein ThiG RA8CHR_03732 PF02581 Thiamine monophosphate synthase RA8CHR_03736 PF05658 Head domain of trimeric autotransporter adhesin RA8CHR_03736 PF03895 YadA-like membrane anchor domain RA8CHR_03736 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_03736 PF05662 Coiled stalk of trimeric autotransporter adhesin RA8CHR_03739 PF01068 ATP dependent DNA ligase domain RA8CHR_03739 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_03739 PF13298 DNA polymerase Ligase (LigD) RA8CHR_03747 PF00294 pfkB family carbohydrate kinase RA8CHR_03749 PF13180 PDZ domain RA8CHR_03750 PF08521 Two-component sensor kinase N-terminal RA8CHR_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03750 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03751 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03751 PF00072 Response regulator receiver domain RA8CHR_03752 PF01614 Bacterial transcriptional regulator RA8CHR_03752 PF09339 IclR helix-turn-helix domain RA8CHR_03753 PF01494 FAD binding domain RA8CHR_03754 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_03754 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_03755 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RA8CHR_03756 PF04377 Arginine-tRNA-protein transferase, C terminus RA8CHR_03756 PF04376 Arginine-tRNA-protein transferase, N terminus RA8CHR_03757 PF01614 Bacterial transcriptional regulator RA8CHR_03757 PF09339 IclR helix-turn-helix domain RA8CHR_03758 PF00768 D-alanyl-D-alanine carboxypeptidase RA8CHR_03759 PF08502 LeuA allosteric (dimerisation) domain RA8CHR_03759 PF00682 HMGL-like RA8CHR_03760 PF00682 HMGL-like RA8CHR_03760 PF08502 LeuA allosteric (dimerisation) domain RA8CHR_03761 PF01066 CDP-alcohol phosphatidyltransferase RA8CHR_03762 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RA8CHR_03762 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RA8CHR_03763 PF10369 Small subunit of acetolactate synthase RA8CHR_03764 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_03764 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_03764 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_03769 PF01219 Prokaryotic diacylglycerol kinase RA8CHR_03770 PF03641 Possible lysine decarboxylase RA8CHR_03771 PF00543 Nitrogen regulatory protein P-II RA8CHR_03772 PF00892 EamA-like transporter family RA8CHR_03775 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_03775 PF00107 Zinc-binding dehydrogenase RA8CHR_03776 PF00719 Inorganic pyrophosphatase RA8CHR_03777 PF03030 Inorganic H+ pyrophosphatase RA8CHR_03784 PF13091 PLD-like domain RA8CHR_03786 PF00171 Aldehyde dehydrogenase family RA8CHR_03787 PF02535 ZIP Zinc transporter RA8CHR_03788 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_03788 PF01842 ACT domain RA8CHR_03788 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_03789 PF00561 alpha/beta hydrolase fold RA8CHR_03791 PF02515 CoA-transferase family III RA8CHR_03792 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RA8CHR_03792 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RA8CHR_03796 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_03797 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_03797 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_03797 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_03798 PF00171 Aldehyde dehydrogenase family RA8CHR_03799 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03800 PF00355 Rieske [2Fe-2S] domain RA8CHR_03801 PF00970 Oxidoreductase FAD-binding domain RA8CHR_03801 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_03801 PF00175 Oxidoreductase NAD-binding domain RA8CHR_03802 PF00866 Ring hydroxylating beta subunit RA8CHR_03803 PF00355 Rieske [2Fe-2S] domain RA8CHR_03803 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_03805 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_03805 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_03806 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_03806 PF01799 [2Fe-2S] binding domain RA8CHR_03807 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_03807 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_03827 PF01476 LysM domain RA8CHR_03827 PF00756 Putative esterase RA8CHR_03836 PF00158 Sigma-54 interaction domain RA8CHR_03836 PF02954 Bacterial regulatory protein, Fis family RA8CHR_03836 PF13185 GAF domain RA8CHR_03837 PF04055 Radical SAM superfamily RA8CHR_03837 PF06463 Molybdenum Cofactor Synthesis C RA8CHR_03838 PF12804 MobA-like NTP transferase domain RA8CHR_03839 PF03453 MoeA N-terminal region (domain I and II) RA8CHR_03839 PF03454 MoeA C-terminal region (domain IV) RA8CHR_03839 PF00994 Probable molybdopterin binding domain RA8CHR_03840 PF00027 Cyclic nucleotide-binding domain RA8CHR_03840 PF00005 ABC transporter RA8CHR_03841 PF00075 RNase H RA8CHR_03843 PF16123 Hydroxyacylglutathione hydrolase C-terminus RA8CHR_03843 PF00753 Metallo-beta-lactamase superfamily RA8CHR_03844 PF01476 LysM domain RA8CHR_03844 PF01464 Transglycosylase SLT domain RA8CHR_03845 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03846 PF00005 ABC transporter RA8CHR_03849 PF13662 Toprim domain RA8CHR_03849 PF02132 RecR protein RA8CHR_03850 PF02575 YbaB/EbfC DNA-binding family RA8CHR_03851 PF12169 DNA polymerase III subunits gamma and tau domain III RA8CHR_03851 PF12170 DNA polymerase III tau subunit V interacting with alpha RA8CHR_03851 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RA8CHR_03855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA8CHR_03855 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_03856 PF00580 UvrD/REP helicase N-terminal domain RA8CHR_03856 PF12705 PD-(D/E)XK nuclease superfamily RA8CHR_03856 PF13361 UvrD-like helicase C-terminal domain RA8CHR_03857 PF00085 Thioredoxin RA8CHR_03858 PF07498 Rho termination factor, N-terminal domain RA8CHR_03858 PF07497 Rho termination factor, RNA-binding domain RA8CHR_03858 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA8CHR_03859 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA8CHR_03859 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA8CHR_03860 PF01197 Ribosomal protein L31 RA8CHR_03862 PF01554 MatE RA8CHR_03863 PF11808 Phosphate regulon sensor protein PhoR RA8CHR_03863 PF00989 PAS fold RA8CHR_03863 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03863 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03864 PF00072 Response regulator receiver domain RA8CHR_03864 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03865 PF01895 PhoU domain RA8CHR_03866 PF00005 ABC transporter RA8CHR_03867 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03868 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03869 PF12849 PBP superfamily domain RA8CHR_03870 PF02541 Ppx/GppA phosphatase family RA8CHR_03872 PF13090 Polyphosphate kinase C-terminal domain 2 RA8CHR_03872 PF02503 Polyphosphate kinase middle domain RA8CHR_03872 PF13089 Polyphosphate kinase N-terminal domain RA8CHR_03872 PF17941 Polyphosphate kinase C-terminal domain 1 RA8CHR_03874 PF13192 Thioredoxin domain RA8CHR_03874 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_03875 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_03875 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_03879 PF02515 CoA-transferase family III RA8CHR_03880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_03880 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_03880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_03882 PF03466 LysR substrate binding domain RA8CHR_03882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03883 PF04239 Protein of unknown function (DUF421) RA8CHR_03886 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03889 PF02515 CoA-transferase family III RA8CHR_03890 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03894 PF00582 Universal stress protein family RA8CHR_03896 PF04055 Radical SAM superfamily RA8CHR_03896 PF08497 Radical SAM N-terminal RA8CHR_03896 PF11842 Domain of unknown function (DUF3362) RA8CHR_03897 PF00583 Acetyltransferase (GNAT) family RA8CHR_03897 PF01047 MarR family RA8CHR_03902 PF03631 Virulence factor BrkB RA8CHR_03905 PF00248 Aldo/keto reductase family RA8CHR_03910 PF08032 RNA 2'-O ribose methyltransferase substrate binding RA8CHR_03910 PF00588 SpoU rRNA Methylase family RA8CHR_03911 PF00005 ABC transporter RA8CHR_03912 PF13472 GDSL-like Lipase/Acylhydrolase family RA8CHR_03914 PF01053 Cys/Met metabolism PLP-dependent enzyme RA8CHR_03917 PF00709 Adenylosuccinate synthetase RA8CHR_03918 PF13393 Histidyl-tRNA synthetase RA8CHR_03920 PF01145 SPFH domain / Band 7 family RA8CHR_03921 PF01145 SPFH domain / Band 7 family RA8CHR_03921 PF12221 Bacterial membrane protein N terminal RA8CHR_03922 PF16360 GTP-binding GTPase Middle Region RA8CHR_03922 PF01926 50S ribosome-binding GTPase RA8CHR_03922 PF13167 GTP-binding GTPase N-terminal RA8CHR_03923 PF17209 Hfq protein RA8CHR_03924 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RA8CHR_03924 PF01926 50S ribosome-binding GTPase RA8CHR_03925 PF13360 PQQ-like domain RA8CHR_03927 PF03129 Anticodon binding domain RA8CHR_03927 PF13393 Histidyl-tRNA synthetase RA8CHR_03928 PF04551 GcpE protein RA8CHR_03931 PF04055 Radical SAM superfamily RA8CHR_03932 PF00334 Nucleoside diphosphate kinase RA8CHR_03933 PF00849 RNA pseudouridylate synthase RA8CHR_03933 PF01479 S4 domain RA8CHR_03934 PF04079 Segregation and condensation complex subunit ScpB RA8CHR_03935 PF01479 S4 domain RA8CHR_03935 PF00849 RNA pseudouridylate synthase RA8CHR_03936 PF13525 Outer membrane lipoprotein RA8CHR_03937 PF13307 Helicase C-terminal domain RA8CHR_03937 PF04851 Type III restriction enzyme, res subunit RA8CHR_03941 PF03969 AFG1-like ATPase RA8CHR_03942 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_03942 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_03943 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA8CHR_03943 PF00364 Biotin-requiring enzyme RA8CHR_03943 PF02817 e3 binding domain RA8CHR_03944 PF16870 2-oxoglutarate dehydrogenase C-terminal RA8CHR_03944 PF16078 2-oxoglutarate dehydrogenase N-terminus RA8CHR_03944 PF02779 Transketolase, pyrimidine binding domain RA8CHR_03944 PF00676 Dehydrogenase E1 component RA8CHR_03946 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_03946 PF00501 AMP-binding enzyme RA8CHR_03946 PF16177 Acetyl-coenzyme A synthetase N-terminus RA8CHR_03947 PF03466 LysR substrate binding domain RA8CHR_03947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_03948 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_03949 PF00171 Aldehyde dehydrogenase family RA8CHR_03950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_03950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_03951 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_03951 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_03952 PF01799 [2Fe-2S] binding domain RA8CHR_03952 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_03953 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_03953 PF00501 AMP-binding enzyme RA8CHR_03954 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RA8CHR_03955 PF02441 Flavoprotein RA8CHR_03956 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_03956 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_03956 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_03957 PF05199 GMC oxidoreductase RA8CHR_03957 PF00732 GMC oxidoreductase RA8CHR_03958 PF00083 Sugar (and other) transporter RA8CHR_03958 PF07690 Major Facilitator Superfamily RA8CHR_03961 PF06772 Bacterial low temperature requirement A protein (LtrA) RA8CHR_03962 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_03962 PF00155 Aminotransferase class I and II RA8CHR_03963 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_03963 PF00072 Response regulator receiver domain RA8CHR_03964 PF00072 Response regulator receiver domain RA8CHR_03964 PF01627 Hpt domain RA8CHR_03964 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RA8CHR_03964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_03964 PF00672 HAMP domain RA8CHR_03964 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_03965 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_03965 PF00072 Response regulator receiver domain RA8CHR_03966 PF00563 EAL domain RA8CHR_03966 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_03966 PF08448 PAS fold RA8CHR_03967 PF08668 HDOD domain RA8CHR_03967 PF00563 EAL domain RA8CHR_03968 PF01527 Transposase RA8CHR_03969 PF13683 Integrase core domain RA8CHR_03969 PF13276 HTH-like domain RA8CHR_03972 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_03972 PF07729 FCD domain RA8CHR_03976 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_03976 PF00005 ABC transporter RA8CHR_03977 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_03977 PF00005 ABC transporter RA8CHR_03978 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_03978 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03979 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_03981 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_03984 PF01312 FlhB HrpN YscU SpaS Family RA8CHR_03985 PF01311 Bacterial export proteins, family 1 RA8CHR_03987 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA8CHR_03987 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA8CHR_03987 PF18269 T3SS EscN ATPase C-terminal domain RA8CHR_03990 PF01514 Secretory protein of YscJ/FliF family RA8CHR_03994 PF00263 Bacterial type II and III secretion system protein RA8CHR_03994 PF03958 Bacterial type II/III secretion system short domain RA8CHR_03996 PF00771 FHIPEP family RA8CHR_03998 PF00813 FliP family RA8CHR_03999 PF00107 Zinc-binding dehydrogenase RA8CHR_03999 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04001 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_04001 PF16859 Tetracyclin repressor-like, C-terminal domain RA8CHR_04002 PF07690 Major Facilitator Superfamily RA8CHR_04004 PF08659 KR domain RA8CHR_04004 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_04004 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_04004 PF00550 Phosphopantetheine attachment site RA8CHR_04004 PF14765 Polyketide synthase dehydratase RA8CHR_04004 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_04004 PF00107 Zinc-binding dehydrogenase RA8CHR_04004 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04004 PF00698 Acyl transferase domain RA8CHR_04006 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04007 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_04009 PF03358 NADPH-dependent FMN reductase RA8CHR_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04010 PF03466 LysR substrate binding domain RA8CHR_04011 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04014 PF00355 Rieske [2Fe-2S] domain RA8CHR_04015 PF00120 Glutamine synthetase, catalytic domain RA8CHR_04016 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04017 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04017 PF14759 Reductase C-terminal RA8CHR_04018 PF13458 Periplasmic binding protein RA8CHR_04021 PF00005 ABC transporter RA8CHR_04021 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04022 PF00005 ABC transporter RA8CHR_04023 PF07969 Amidohydrolase family RA8CHR_04025 PF00694 Aconitase C-terminal domain RA8CHR_04026 PF00330 Aconitase family (aconitate hydratase) RA8CHR_04028 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04028 PF07702 UTRA domain RA8CHR_04032 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04033 PF02515 CoA-transferase family III RA8CHR_04034 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_04036 PF01144 Coenzyme A transferase RA8CHR_04037 PF00501 AMP-binding enzyme RA8CHR_04037 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_04038 PF07729 FCD domain RA8CHR_04038 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04039 PF09084 NMT1/THI5 like RA8CHR_04040 PF00005 ABC transporter RA8CHR_04041 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04042 PF00282 Pyridoxal-dependent decarboxylase conserved domain RA8CHR_04043 PF00561 alpha/beta hydrolase fold RA8CHR_04046 PF13677 Membrane MotB of proton-channel complex MotA/MotB RA8CHR_04046 PF00691 OmpA family RA8CHR_04050 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_04050 PF18324 Hypothetical protein TT1725 RA8CHR_04051 PF00793 DAHP synthetase I family RA8CHR_04053 PF07995 Glucose / Sorbosone dehydrogenase RA8CHR_04054 PF00877 NlpC/P60 family RA8CHR_04055 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_04056 PF00364 Biotin-requiring enzyme RA8CHR_04056 PF02817 e3 binding domain RA8CHR_04056 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA8CHR_04057 PF17831 Pyruvate dehydrogenase E1 component middle domain RA8CHR_04057 PF00456 Transketolase, thiamine diphosphate binding domain RA8CHR_04058 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_04058 PF00989 PAS fold RA8CHR_04058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_04059 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04059 PF00072 Response regulator receiver domain RA8CHR_04060 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RA8CHR_04060 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RA8CHR_04061 PF01432 Peptidase family M3 RA8CHR_04063 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RA8CHR_04064 PF01180 Dihydroorotate dehydrogenase RA8CHR_04067 PF01266 FAD dependent oxidoreductase RA8CHR_04070 PF00929 Exonuclease RA8CHR_04071 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04072 PF00012 Hsp70 protein RA8CHR_04073 PF07743 HSCB C-terminal oligomerisation domain RA8CHR_04074 PF01521 Iron-sulphur cluster biosynthesis RA8CHR_04075 PF01592 NifU-like N terminal domain RA8CHR_04076 PF00266 Aminotransferase class-V RA8CHR_04077 PF02082 Transcriptional regulator RA8CHR_04078 PF00271 Helicase conserved C-terminal domain RA8CHR_04078 PF12344 Ultra-violet resistance protein B RA8CHR_04078 PF17757 UvrB interaction domain RA8CHR_04078 PF02151 UvrB/uvrC motif RA8CHR_04078 PF04851 Type III restriction enzyme, res subunit RA8CHR_04079 PF00155 Aminotransferase class I and II RA8CHR_04081 PF04060 Putative Fe-S cluster RA8CHR_04084 PF02785 Biotin carboxylase C-terminal domain RA8CHR_04084 PF18140 Propionyl-coenzyme A carboxylase BT domain RA8CHR_04084 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_04084 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_04084 PF00364 Biotin-requiring enzyme RA8CHR_04086 PF01039 Carboxyl transferase domain RA8CHR_04088 PF02310 B12 binding domain RA8CHR_04088 PF01642 Methylmalonyl-CoA mutase RA8CHR_04089 PF07729 FCD domain RA8CHR_04089 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04091 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04092 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_04093 PF01207 Dihydrouridine synthase (Dus) RA8CHR_04094 PF00271 Helicase conserved C-terminal domain RA8CHR_04094 PF08494 DEAD/H associated RA8CHR_04094 PF00270 DEAD/DEAH box helicase RA8CHR_04095 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_04095 PF00072 Response regulator receiver domain RA8CHR_04103 PF02254 TrkA-N domain RA8CHR_04103 PF00999 Sodium/hydrogen exchanger family RA8CHR_04104 PF00106 short chain dehydrogenase RA8CHR_04106 PF02803 Thiolase, C-terminal domain RA8CHR_04106 PF00108 Thiolase, N-terminal domain RA8CHR_04107 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RA8CHR_04110 PF13417 Glutathione S-transferase, N-terminal domain RA8CHR_04111 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_04113 PF05981 CreA protein RA8CHR_04114 PF00005 ABC transporter RA8CHR_04114 PF00664 ABC transporter transmembrane region RA8CHR_04115 PF01476 LysM domain RA8CHR_04115 PF01551 Peptidase family M23 RA8CHR_04116 PF13091 PLD-like domain RA8CHR_04119 PF03466 LysR substrate binding domain RA8CHR_04119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04120 PF01261 Xylose isomerase-like TIM barrel RA8CHR_04121 PF00355 Rieske [2Fe-2S] domain RA8CHR_04122 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04128 PF03466 LysR substrate binding domain RA8CHR_04128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04131 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_04132 PF00005 ABC transporter RA8CHR_04133 PF00005 ABC transporter RA8CHR_04133 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04136 PF00355 Rieske [2Fe-2S] domain RA8CHR_04137 PF00355 Rieske [2Fe-2S] domain RA8CHR_04138 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04138 PF14759 Reductase C-terminal RA8CHR_04139 PF00881 Nitroreductase family RA8CHR_04142 PF03466 LysR substrate binding domain RA8CHR_04142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04143 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04144 PF00005 ABC transporter RA8CHR_04146 PF02627 Carboxymuconolactone decarboxylase family RA8CHR_04149 PF05199 GMC oxidoreductase RA8CHR_04149 PF00732 GMC oxidoreductase RA8CHR_04150 PF00034 Cytochrome c RA8CHR_04151 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04152 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04153 PF00072 Response regulator receiver domain RA8CHR_04153 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04154 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04154 PF00072 Response regulator receiver domain RA8CHR_04158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_04158 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_04158 PF00072 Response regulator receiver domain RA8CHR_04158 PF09456 RcsC Alpha-Beta-Loop (ABL) RA8CHR_04159 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04160 PF03466 LysR substrate binding domain RA8CHR_04161 PF00561 alpha/beta hydrolase fold RA8CHR_04163 PF01738 Dienelactone hydrolase family RA8CHR_04167 PF09411 Lipid A 3-O-deacylase (PagL) RA8CHR_04168 PF02311 AraC-like ligand binding domain RA8CHR_04168 PF12833 Helix-turn-helix domain RA8CHR_04169 PF07690 Major Facilitator Superfamily RA8CHR_04170 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_04170 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_04172 PF03358 NADPH-dependent FMN reductase RA8CHR_04173 PF05726 Pirin C-terminal cupin domain RA8CHR_04173 PF02678 Pirin RA8CHR_04179 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_04179 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_04185 PF04264 YceI-like domain RA8CHR_04186 PF02566 OsmC-like protein RA8CHR_04187 PF00199 Catalase RA8CHR_04187 PF06628 Catalase-related immune-responsive RA8CHR_04188 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04188 PF03466 LysR substrate binding domain RA8CHR_04191 PF01757 Acyltransferase family RA8CHR_04196 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04196 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04196 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04196 PF12806 Acetyl-CoA dehydrogenase C-terminal like RA8CHR_04197 PF01047 MarR family RA8CHR_04198 PF00561 alpha/beta hydrolase fold RA8CHR_04199 PF01799 [2Fe-2S] binding domain RA8CHR_04199 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04200 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_04200 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_04201 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_04201 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_04202 PF00355 Rieske [2Fe-2S] domain RA8CHR_04203 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04203 PF14759 Reductase C-terminal RA8CHR_04204 PF00355 Rieske [2Fe-2S] domain RA8CHR_04204 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_04208 PF00857 Isochorismatase family RA8CHR_04209 PF13458 Periplasmic binding protein RA8CHR_04210 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_04212 PF00005 ABC transporter RA8CHR_04212 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04213 PF00005 ABC transporter RA8CHR_04214 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04214 PF03466 LysR substrate binding domain RA8CHR_04216 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04217 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04219 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_04220 PF02515 CoA-transferase family III RA8CHR_04221 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04222 PF00106 short chain dehydrogenase RA8CHR_04223 PF02803 Thiolase, C-terminal domain RA8CHR_04223 PF00108 Thiolase, N-terminal domain RA8CHR_04225 PF04303 PrpF protein RA8CHR_04227 PF02311 AraC-like ligand binding domain RA8CHR_04227 PF12833 Helix-turn-helix domain RA8CHR_04228 PF04632 Fusaric acid resistance protein family RA8CHR_04230 PF13533 Biotin-lipoyl like RA8CHR_04235 PF01380 SIS domain RA8CHR_04235 PF01418 Helix-turn-helix domain, rpiR family RA8CHR_04235 PF02685 Glucokinase RA8CHR_04236 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_04236 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_04237 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_04237 PF00501 AMP-binding enzyme RA8CHR_04238 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04239 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04239 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04239 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04240 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04241 PF00106 short chain dehydrogenase RA8CHR_04242 PF01575 MaoC like domain RA8CHR_04245 PF07729 FCD domain RA8CHR_04245 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04246 PF00561 alpha/beta hydrolase fold RA8CHR_04248 PF01614 Bacterial transcriptional regulator RA8CHR_04248 PF09339 IclR helix-turn-helix domain RA8CHR_04249 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04250 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_04250 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_04252 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_04252 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_04253 PF01799 [2Fe-2S] binding domain RA8CHR_04253 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04254 PF01494 FAD binding domain RA8CHR_04255 PF00857 Isochorismatase family RA8CHR_04256 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04261 PF00501 AMP-binding enzyme RA8CHR_04261 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_04262 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04263 PF03466 LysR substrate binding domain RA8CHR_04263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04265 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_04270 PF00216 Bacterial DNA-binding protein RA8CHR_04271 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RA8CHR_04271 PF03483 B3/4 domain RA8CHR_04271 PF03147 Ferredoxin-fold anticodon binding domain RA8CHR_04271 PF03484 tRNA synthetase B5 domain RA8CHR_04271 PF01588 Putative tRNA binding domain RA8CHR_04272 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RA8CHR_04272 PF01409 tRNA synthetases class II core domain (F) RA8CHR_04273 PF00453 Ribosomal protein L20 RA8CHR_04274 PF01632 Ribosomal protein L35 RA8CHR_04275 PF05198 Translation initiation factor IF-3, N-terminal domain RA8CHR_04275 PF00707 Translation initiation factor IF-3, C-terminal domain RA8CHR_04276 PF02824 TGS domain RA8CHR_04276 PF03129 Anticodon binding domain RA8CHR_04276 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RA8CHR_04276 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RA8CHR_04279 PF00463 Isocitrate lyase family RA8CHR_04283 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_04283 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_04283 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_04284 PF17938 Tetracyclin repressor-like, C-terminal domain RA8CHR_04284 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_04285 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04286 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA8CHR_04286 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA8CHR_04292 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_04293 PF01261 Xylose isomerase-like TIM barrel RA8CHR_04297 PF00885 6,7-dimethyl-8-ribityllumazine synthase RA8CHR_04302 PF02311 AraC-like ligand binding domain RA8CHR_04302 PF12833 Helix-turn-helix domain RA8CHR_04303 PF00916 Sulfate permease family RA8CHR_04303 PF01740 STAS domain RA8CHR_04304 PF00472 RF-1 domain RA8CHR_04305 PF09423 PhoD-like phosphatase RA8CHR_04305 PF16655 PhoD-like phosphatase, N-terminal domain RA8CHR_04307 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_04307 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_04307 PF17871 AAA lid domain RA8CHR_04307 PF02861 Clp amino terminal domain, pathogenicity island component RA8CHR_04307 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_04308 PF00135 Carboxylesterase family RA8CHR_04309 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04311 PF03466 LysR substrate binding domain RA8CHR_04312 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04313 PF02391 MoaE protein RA8CHR_04314 PF00701 Dihydrodipicolinate synthetase family RA8CHR_04315 PF02597 ThiS family RA8CHR_04316 PF03453 MoeA N-terminal region (domain I and II) RA8CHR_04316 PF03454 MoeA C-terminal region (domain IV) RA8CHR_04316 PF00994 Probable molybdopterin binding domain RA8CHR_04317 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RA8CHR_04318 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_04318 PF14821 Threonine synthase N terminus RA8CHR_04319 PF00742 Homoserine dehydrogenase RA8CHR_04319 PF03447 Homoserine dehydrogenase, NAD binding domain RA8CHR_04319 PF01842 ACT domain RA8CHR_04320 PF00155 Aminotransferase class I and II RA8CHR_04322 PF00578 AhpC/TSA family RA8CHR_04323 PF02562 PhoH-like protein RA8CHR_04323 PF13638 PIN domain RA8CHR_04326 PF03796 DnaB-like helicase C terminal domain RA8CHR_04326 PF00772 DnaB-like helicase N terminal domain RA8CHR_04327 PF01281 Ribosomal protein L9, N-terminal domain RA8CHR_04327 PF03948 Ribosomal protein L9, C-terminal domain RA8CHR_04328 PF01084 Ribosomal protein S18 RA8CHR_04330 PF01250 Ribosomal protein S6 RA8CHR_04332 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RA8CHR_04332 PF02896 PEP-utilising enzyme, TIM barrel domain RA8CHR_04332 PF00391 PEP-utilising enzyme, mobile domain RA8CHR_04333 PF03618 Kinase/pyrophosphorylase RA8CHR_04334 PF13192 Thioredoxin domain RA8CHR_04334 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04335 PF10417 C-terminal domain of 1-Cys peroxiredoxin RA8CHR_04335 PF00578 AhpC/TSA family RA8CHR_04336 PF00210 Ferritin-like domain RA8CHR_04337 PF03544 Gram-negative bacterial TonB protein C-terminal RA8CHR_04338 PF01618 MotA/TolQ/ExbB proton channel family RA8CHR_04339 PF02472 Biopolymer transport protein ExbD/TolR RA8CHR_04341 PF03928 Haem-degrading RA8CHR_04342 PF01027 Inhibitor of apoptosis-promoting Bax1 RA8CHR_04343 PF05958 tRNA (Uracil-5-)-methyltransferase RA8CHR_04344 PF04539 Sigma-70 region 3 RA8CHR_04344 PF04545 Sigma-70, region 4 RA8CHR_04344 PF00140 Sigma-70 factor, region 1.2 RA8CHR_04344 PF04542 Sigma-70 region 2 RA8CHR_04345 PF01476 LysM domain RA8CHR_04345 PF01551 Peptidase family M23 RA8CHR_04347 PF01975 Survival protein SurE RA8CHR_04348 PF00550 Phosphopantetheine attachment site RA8CHR_04348 PF08659 KR domain RA8CHR_04348 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_04348 PF00698 Acyl transferase domain RA8CHR_04348 PF14765 Polyketide synthase dehydratase RA8CHR_04348 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_04348 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_04348 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04348 PF00107 Zinc-binding dehydrogenase RA8CHR_04353 PF00216 Bacterial DNA-binding protein RA8CHR_04354 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_04355 PF00561 alpha/beta hydrolase fold RA8CHR_04356 PF03466 LysR substrate binding domain RA8CHR_04356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04357 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_04357 PF00114 Pilin (bacterial filament) RA8CHR_04361 PF05567 Neisseria PilC beta-propeller domain RA8CHR_04366 PF01066 CDP-alcohol phosphatidyltransferase RA8CHR_04367 PF08459 UvrC Helix-hairpin-helix N-terminal RA8CHR_04367 PF02151 UvrB/uvrC motif RA8CHR_04367 PF01541 GIY-YIG catalytic domain RA8CHR_04369 PF09285 Elongation factor P, C-terminal RA8CHR_04369 PF08207 Elongation factor P (EF-P) KOW-like domain RA8CHR_04369 PF01132 Elongation factor P (EF-P) OB domain RA8CHR_04370 PF03641 Possible lysine decarboxylase RA8CHR_04372 PF02646 RmuC family RA8CHR_04373 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_04373 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8CHR_04375 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RA8CHR_04375 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RA8CHR_04376 PF05532 CsbD-like RA8CHR_04379 PF00850 Histone deacetylase domain RA8CHR_04380 PF09361 Phasin protein RA8CHR_04381 PF00106 short chain dehydrogenase RA8CHR_04382 PF03631 Virulence factor BrkB RA8CHR_04383 PF08278 DNA primase DnaG DnaB-binding RA8CHR_04383 PF13662 Toprim domain RA8CHR_04383 PF01807 CHC2 zinc finger RA8CHR_04383 PF10410 DnaB-helicase binding domain of primase RA8CHR_04383 PF08275 DNA primase catalytic core, N-terminal domain RA8CHR_04384 PF03979 Sigma-70 factor, region 1.1 RA8CHR_04384 PF00140 Sigma-70 factor, region 1.2 RA8CHR_04384 PF04545 Sigma-70, region 4 RA8CHR_04384 PF04542 Sigma-70 region 2 RA8CHR_04384 PF04539 Sigma-70 region 3 RA8CHR_04384 PF04546 Sigma-70, non-essential region RA8CHR_04385 PF07690 Major Facilitator Superfamily RA8CHR_04387 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04388 PF02515 CoA-transferase family III RA8CHR_04389 PF00682 HMGL-like RA8CHR_04390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04390 PF03466 LysR substrate binding domain RA8CHR_04391 PF03466 LysR substrate binding domain RA8CHR_04391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04392 PF13460 NAD(P)H-binding RA8CHR_04395 PF00005 ABC transporter RA8CHR_04396 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04396 PF00005 ABC transporter RA8CHR_04399 PF13458 Periplasmic binding protein RA8CHR_04400 PF00970 Oxidoreductase FAD-binding domain RA8CHR_04400 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04401 PF07729 FCD domain RA8CHR_04401 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04402 PF00355 Rieske [2Fe-2S] domain RA8CHR_04403 PF01717 Cobalamin-independent synthase, Catalytic domain RA8CHR_04405 PF13396 Phospholipase_D-nuclease N-terminal RA8CHR_04405 PF13091 PLD-like domain RA8CHR_04407 PF00561 alpha/beta hydrolase fold RA8CHR_04408 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04409 PF00171 Aldehyde dehydrogenase family RA8CHR_04410 PF00701 Dihydrodipicolinate synthetase family RA8CHR_04411 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04412 PF07729 FCD domain RA8CHR_04412 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04413 PF01370 NAD dependent epimerase/dehydratase family RA8CHR_04414 PF08450 SMP-30/Gluconolactonase/LRE-like region RA8CHR_04415 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_04417 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_04418 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA8CHR_04418 PF08666 SAF domain RA8CHR_04420 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04421 PF02666 Phosphatidylserine decarboxylase RA8CHR_04423 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_04424 PF01025 GrpE RA8CHR_04425 PF00012 Hsp70 protein RA8CHR_04426 PF00226 DnaJ domain RA8CHR_04426 PF01556 DnaJ C terminal domain RA8CHR_04426 PF00684 DnaJ central domain RA8CHR_04427 PF07729 FCD domain RA8CHR_04427 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04428 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_04429 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04430 PF08298 PrkA AAA domain RA8CHR_04430 PF06798 PrkA serine protein kinase C-terminal domain RA8CHR_04431 PF04285 Protein of unknown function (DUF444) RA8CHR_04432 PF04293 SpoVR like protein RA8CHR_04433 PF02515 CoA-transferase family III RA8CHR_04436 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04437 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04437 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04437 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04438 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04438 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04438 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04439 PF03352 Methyladenine glycosylase RA8CHR_04440 PF01220 Dehydroquinase class II RA8CHR_04441 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_04443 PF07729 FCD domain RA8CHR_04443 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04444 PF02608 ABC transporter substrate-binding protein PnrA-like RA8CHR_04445 PF00355 Rieske [2Fe-2S] domain RA8CHR_04445 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04446 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04447 PF02798 Glutathione S-transferase, N-terminal domain RA8CHR_04448 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04448 PF00107 Zinc-binding dehydrogenase RA8CHR_04449 PF00561 alpha/beta hydrolase fold RA8CHR_04450 PF00756 Putative esterase RA8CHR_04453 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_04453 PF02785 Biotin carboxylase C-terminal domain RA8CHR_04453 PF00364 Biotin-requiring enzyme RA8CHR_04453 PF18140 Propionyl-coenzyme A carboxylase BT domain RA8CHR_04453 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_04454 PF01039 Carboxyl transferase domain RA8CHR_04456 PF00873 AcrB/AcrD/AcrF family RA8CHR_04458 PF02321 Outer membrane efflux protein RA8CHR_04459 PF04055 Radical SAM superfamily RA8CHR_04462 PF00962 Adenosine/AMP deaminase RA8CHR_04464 PF13091 PLD-like domain RA8CHR_04466 PF01053 Cys/Met metabolism PLP-dependent enzyme RA8CHR_04467 PF00561 alpha/beta hydrolase fold RA8CHR_04467 PF08386 TAP-like protein RA8CHR_04468 PF13460 NAD(P)H-binding RA8CHR_04469 PF00085 Thioredoxin RA8CHR_04470 PF03631 Virulence factor BrkB RA8CHR_04472 PF02913 FAD linked oxidases, C-terminal domain RA8CHR_04472 PF01565 FAD binding domain RA8CHR_04473 PF00303 Thymidylate synthase RA8CHR_04478 PF00303 Thymidylate synthase RA8CHR_04479 PF01527 Transposase RA8CHR_04480 PF13276 HTH-like domain RA8CHR_04480 PF13683 Integrase core domain RA8CHR_04485 PF01381 Helix-turn-helix RA8CHR_04485 PF09856 Predicted transcriptional regulator (DUF2083) RA8CHR_04485 PF06114 IrrE N-terminal-like domain RA8CHR_04487 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RA8CHR_04490 PF00303 Thymidylate synthase RA8CHR_04491 PF00186 Dihydrofolate reductase RA8CHR_04492 PF00355 Rieske [2Fe-2S] domain RA8CHR_04493 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04495 PF13577 SnoaL-like domain RA8CHR_04496 PF00355 Rieske [2Fe-2S] domain RA8CHR_04496 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_04497 PF00970 Oxidoreductase FAD-binding domain RA8CHR_04497 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04497 PF00175 Oxidoreductase NAD-binding domain RA8CHR_04498 PF03466 LysR substrate binding domain RA8CHR_04498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04499 PF03372 Endonuclease/Exonuclease/phosphatase family RA8CHR_04501 PF02954 Bacterial regulatory protein, Fis family RA8CHR_04501 PF00158 Sigma-54 interaction domain RA8CHR_04501 PF00072 Response regulator receiver domain RA8CHR_04502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_04502 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_04502 PF00989 PAS fold RA8CHR_04504 PF00120 Glutamine synthetase, catalytic domain RA8CHR_04504 PF03951 Glutamine synthetase, beta-Grasp domain RA8CHR_04505 PF02464 Competence-damaged protein RA8CHR_04505 PF18146 Damage-inducible protein CinA KH domain RA8CHR_04505 PF00994 Probable molybdopterin binding domain RA8CHR_04510 PF00849 RNA pseudouridylate synthase RA8CHR_04510 PF01479 S4 domain RA8CHR_04512 PF10119 Predicted methyltransferase regulatory domain RA8CHR_04512 PF13847 Methyltransferase domain RA8CHR_04516 PF13419 Haloacid dehalogenase-like hydrolase RA8CHR_04518 PF00691 OmpA family RA8CHR_04519 PF03989 DNA gyrase C-terminal domain, beta-propeller RA8CHR_04519 PF00521 DNA gyrase/topoisomerase IV, subunit A RA8CHR_04521 PF00266 Aminotransferase class-V RA8CHR_04522 PF00800 Prephenate dehydratase RA8CHR_04522 PF01817 Chorismate mutase type II RA8CHR_04522 PF01842 ACT domain RA8CHR_04523 PF01842 ACT domain RA8CHR_04523 PF02153 Prephenate dehydrogenase RA8CHR_04524 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA8CHR_04525 PF00575 S1 RNA binding domain RA8CHR_04526 PF00216 Bacterial DNA-binding protein RA8CHR_04528 PF18073 Rubredoxin metal binding domain RA8CHR_04532 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_04533 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RA8CHR_04534 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RA8CHR_04534 PF00361 Proton-conducting membrane transporter RA8CHR_04534 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RA8CHR_04534 PF13244 Domain of unknown function (DUF4040) RA8CHR_04535 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RA8CHR_04536 PF00361 Proton-conducting membrane transporter RA8CHR_04538 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RA8CHR_04539 PF03334 Na+/H+ antiporter subunit RA8CHR_04544 PF07690 Major Facilitator Superfamily RA8CHR_04546 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04546 PF14759 Reductase C-terminal RA8CHR_04549 PF01872 RibD C-terminal domain RA8CHR_04549 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA8CHR_04552 PF13439 Glycosyltransferase Family 4 RA8CHR_04552 PF00534 Glycosyl transferases group 1 RA8CHR_04554 PF00107 Zinc-binding dehydrogenase RA8CHR_04554 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04556 PF04264 YceI-like domain RA8CHR_04559 PF02625 XdhC and CoxI family RA8CHR_04559 PF13478 XdhC Rossmann domain RA8CHR_04562 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_04562 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_04562 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_04563 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_04563 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_04564 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_04564 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_04565 PF01799 [2Fe-2S] binding domain RA8CHR_04565 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04566 PF01590 GAF domain RA8CHR_04566 PF02954 Bacterial regulatory protein, Fis family RA8CHR_04568 PF10415 Fumarase C C-terminus RA8CHR_04568 PF00206 Lyase RA8CHR_04569 PF04235 Protein of unknown function (DUF418) RA8CHR_04572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04572 PF03459 TOBE domain RA8CHR_04574 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04575 PF03459 TOBE domain RA8CHR_04575 PF00005 ABC transporter RA8CHR_04577 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_04577 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_04578 PF01266 FAD dependent oxidoreductase RA8CHR_04579 PF01037 Lrp/AsnC ligand binding domain RA8CHR_04580 PF12849 PBP superfamily domain RA8CHR_04581 PF00005 ABC transporter RA8CHR_04582 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04583 PF03459 TOBE domain RA8CHR_04583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04587 PF00005 ABC transporter RA8CHR_04588 PF00005 ABC transporter RA8CHR_04588 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04591 PF00175 Oxidoreductase NAD-binding domain RA8CHR_04591 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04591 PF00970 Oxidoreductase FAD-binding domain RA8CHR_04592 PF01883 Iron-sulfur cluster assembly protein RA8CHR_04593 PF05138 Phenylacetic acid catabolic protein RA8CHR_04594 PF06243 Phenylacetic acid degradation B RA8CHR_04595 PF05138 Phenylacetic acid catabolic protein RA8CHR_04597 PF03061 Thioesterase superfamily RA8CHR_04598 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_04599 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_04600 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_04601 PF03781 Sulfatase-modifying factor enzyme 1 RA8CHR_04601 PF12867 DinB superfamily RA8CHR_04603 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8CHR_04605 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_04606 PF02780 Transketolase, C-terminal domain RA8CHR_04606 PF02779 Transketolase, pyrimidine binding domain RA8CHR_04606 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RA8CHR_04607 PF00348 Polyprenyl synthetase RA8CHR_04608 PF02609 Exonuclease VII small subunit RA8CHR_04611 PF00581 Rhodanese-like domain RA8CHR_04613 PF00005 ABC transporter RA8CHR_04616 PF07311 Dodecin RA8CHR_04619 PF01738 Dienelactone hydrolase family RA8CHR_04621 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_04622 PF01266 FAD dependent oxidoreductase RA8CHR_04623 PF03466 LysR substrate binding domain RA8CHR_04623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04624 PF07687 Peptidase dimerisation domain RA8CHR_04624 PF01546 Peptidase family M20/M25/M40 RA8CHR_04625 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RA8CHR_04625 PF00476 DNA polymerase family A RA8CHR_04625 PF01612 3'-5' exonuclease RA8CHR_04625 PF01367 5'-3' exonuclease, C-terminal SAM fold RA8CHR_04627 PF01636 Phosphotransferase enzyme family RA8CHR_04629 PF00580 UvrD/REP helicase N-terminal domain RA8CHR_04629 PF13361 UvrD-like helicase C-terminal domain RA8CHR_04632 PF00478 IMP dehydrogenase / GMP reductase domain RA8CHR_04634 PF00106 short chain dehydrogenase RA8CHR_04635 PF00108 Thiolase, N-terminal domain RA8CHR_04635 PF02803 Thiolase, C-terminal domain RA8CHR_04637 PF00171 Aldehyde dehydrogenase family RA8CHR_04638 PF00271 Helicase conserved C-terminal domain RA8CHR_04638 PF00270 DEAD/DEAH box helicase RA8CHR_04639 PF00929 Exonuclease RA8CHR_04640 PF01435 Peptidase family M48 RA8CHR_04641 PF01329 Pterin 4 alpha carbinolamine dehydratase RA8CHR_04642 PF03193 RsgA GTPase RA8CHR_04643 PF13439 Glycosyltransferase Family 4 RA8CHR_04643 PF00534 Glycosyl transferases group 1 RA8CHR_04644 PF00155 Aminotransferase class I and II RA8CHR_04645 PF17113 Regulatory signalling modulator protein AmpE RA8CHR_04645 PF03186 CobD/Cbib protein RA8CHR_04646 PF00293 NUDIX domain RA8CHR_04647 PF01245 Ribosomal protein L19 RA8CHR_04648 PF01746 tRNA (Guanine-1)-methyltransferase RA8CHR_04649 PF05239 PRC-barrel domain RA8CHR_04649 PF01782 RimM N-terminal domain RA8CHR_04650 PF00886 Ribosomal protein S16 RA8CHR_04653 PF01384 Phosphate transporter family RA8CHR_04654 PF01865 Protein of unknown function DUF47 RA8CHR_04655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RA8CHR_04656 PF12627 Probable RNA and SrmB- binding site of polymerase A RA8CHR_04656 PF12626 Polymerase A arginine-rich C-terminus RA8CHR_04656 PF01743 Poly A polymerase head domain RA8CHR_04657 PF00308 Bacterial dnaA protein RA8CHR_04658 PF00586 AIR synthase related protein, N-terminal domain RA8CHR_04658 PF02769 AIR synthase related protein, C-terminal domain RA8CHR_04659 PF01594 AI-2E family transporter RA8CHR_04662 PF13439 Glycosyltransferase Family 4 RA8CHR_04665 PF13369 Transglutaminase-like superfamily RA8CHR_04666 PF03023 Lipid II flippase MurJ RA8CHR_04667 PF01649 Ribosomal protein S20 RA8CHR_04669 PF00202 Aminotransferase class-III RA8CHR_04670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RA8CHR_04670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RA8CHR_04671 PF04199 Putative cyclase RA8CHR_04672 PF00266 Aminotransferase class-V RA8CHR_04673 PF03301 Tryptophan 2,3-dioxygenase RA8CHR_04675 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04676 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RA8CHR_04676 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RA8CHR_04677 PF03450 CO dehydrogenase flavoprotein C-terminal domain RA8CHR_04677 PF00941 FAD binding domain in molybdopterin dehydrogenase RA8CHR_04678 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04678 PF01799 [2Fe-2S] binding domain RA8CHR_04680 PF01568 Molydopterin dinucleotide binding domain RA8CHR_04680 PF00384 Molybdopterin oxidoreductase RA8CHR_04682 PF01494 FAD binding domain RA8CHR_04684 PF07664 Ferrous iron transport protein B C terminus RA8CHR_04684 PF07670 Nucleoside recognition RA8CHR_04684 PF02421 Ferrous iron transport protein B RA8CHR_04688 PF00330 Aconitase family (aconitate hydratase) RA8CHR_04688 PF00694 Aconitase C-terminal domain RA8CHR_04691 PF11791 Aconitate B N-terminal domain RA8CHR_04691 PF00330 Aconitase family (aconitate hydratase) RA8CHR_04691 PF06434 Aconitate hydratase 2 N-terminus RA8CHR_04695 PF00056 lactate/malate dehydrogenase, NAD binding domain RA8CHR_04695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RA8CHR_04696 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_04696 PF07702 UTRA domain RA8CHR_04699 PF00890 FAD binding domain RA8CHR_04699 PF02910 Fumarate reductase flavoprotein C-term RA8CHR_04700 PF13085 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04701 PF03937 Flavinator of succinate dehydrogenase RA8CHR_04702 PF00285 Citrate synthase, C-terminal domain RA8CHR_04704 PF03466 LysR substrate binding domain RA8CHR_04704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04705 PF00330 Aconitase family (aconitate hydratase) RA8CHR_04706 PF00694 Aconitase C-terminal domain RA8CHR_04707 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_04708 PF01118 Semialdehyde dehydrogenase, NAD binding domain RA8CHR_04708 PF02774 Semialdehyde dehydrogenase, dimerisation domain RA8CHR_04710 PF01416 tRNA pseudouridine synthase RA8CHR_04711 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RA8CHR_04712 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_04713 PF00290 Tryptophan synthase alpha chain RA8CHR_04714 PF01039 Carboxyl transferase domain RA8CHR_04714 PF17848 Acetyl-coA carboxylase zinc finger domain RA8CHR_04715 PF02325 YGGT family RA8CHR_04717 PF01336 OB-fold nucleic acid binding domain RA8CHR_04717 PF00152 tRNA synthetases class II (D, K and N) RA8CHR_04718 PF00012 Hsp70 protein RA8CHR_04719 PF01863 Protein of unknown function DUF45 RA8CHR_04720 PF00933 Glycosyl hydrolase family 3 N terminal domain RA8CHR_04721 PF01648 4'-phosphopantetheinyl transferase superfamily RA8CHR_04722 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RA8CHR_04723 PF11967 Recombination protein O N terminal RA8CHR_04723 PF02565 Recombination protein O C terminal RA8CHR_04724 PF07650 KH domain RA8CHR_04724 PF01926 50S ribosome-binding GTPase RA8CHR_04725 PF00035 Double-stranded RNA binding motif RA8CHR_04725 PF14622 Ribonuclease-III-like RA8CHR_04727 PF10502 Signal peptidase, peptidase S26 RA8CHR_04728 PF03144 Elongation factor Tu domain 2 RA8CHR_04728 PF00679 Elongation factor G C-terminus RA8CHR_04728 PF06421 GTP-binding protein LepA C-terminus RA8CHR_04728 PF00009 Elongation factor Tu GTP binding domain RA8CHR_04729 PF13180 PDZ domain RA8CHR_04732 PF08281 Sigma-70, region 4 RA8CHR_04732 PF04542 Sigma-70 region 2 RA8CHR_04733 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_04733 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_04734 PF00550 Phosphopantetheine attachment site RA8CHR_04736 PF00698 Acyl transferase domain RA8CHR_04737 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RA8CHR_04737 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RA8CHR_04738 PF02504 Fatty acid synthesis protein RA8CHR_04739 PF01783 Ribosomal L32p protein family RA8CHR_04740 PF02620 Large ribosomal RNA subunit accumulation protein YceD RA8CHR_04741 PF02545 Maf-like protein RA8CHR_04742 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA8CHR_04743 PF07690 Major Facilitator Superfamily RA8CHR_04744 PF01343 Peptidase family S49 RA8CHR_04744 PF06965 Na+/H+ antiporter 1 RA8CHR_04747 PF01479 S4 domain RA8CHR_04747 PF00849 RNA pseudouridylate synthase RA8CHR_04748 PF00575 S1 RNA binding domain RA8CHR_04748 PF10150 Ribonuclease E/G family RA8CHR_04748 PF12111 Polyribonucleotide phosphorylase C terminal RA8CHR_04749 PF02397 Bacterial sugar transferase RA8CHR_04750 PF01050 Mannose-6-phosphate isomerase RA8CHR_04750 PF00483 Nucleotidyl transferase RA8CHR_04751 PF01370 NAD dependent epimerase/dehydratase family RA8CHR_04755 PF00534 Glycosyl transferases group 1 RA8CHR_04755 PF13579 Glycosyl transferase 4-like domain RA8CHR_04756 PF02706 Chain length determinant protein RA8CHR_04756 PF13807 G-rich domain on putative tyrosine kinase RA8CHR_04756 PF13614 AAA domain RA8CHR_04757 PF01451 Low molecular weight phosphotyrosine protein phosphatase RA8CHR_04758 PF02563 Polysaccharide biosynthesis/export protein RA8CHR_04758 PF10531 SLBB domain RA8CHR_04762 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RA8CHR_04762 PF03900 Porphobilinogen deaminase, C-terminal domain RA8CHR_04763 PF00311 Phosphoenolpyruvate carboxylase RA8CHR_04764 PF03466 LysR substrate binding domain RA8CHR_04764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04765 PF00817 impB/mucB/samB family RA8CHR_04765 PF11799 impB/mucB/samB family C-terminal domain RA8CHR_04773 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RA8CHR_04773 PF14489 QueF-like protein RA8CHR_04774 PF00561 alpha/beta hydrolase fold RA8CHR_04776 PF03883 Peroxide stress protein YaaA RA8CHR_04777 PF08264 Anticodon-binding domain of tRNA RA8CHR_04777 PF10458 Valyl tRNA synthetase tRNA binding arm RA8CHR_04777 PF00133 tRNA synthetases class I (I, L, M and V) RA8CHR_04778 PF00483 Nucleotidyl transferase RA8CHR_04780 PF01206 Sulfurtransferase TusA RA8CHR_04781 PF00293 NUDIX domain RA8CHR_04781 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RA8CHR_04781 PF09297 NADH pyrophosphatase zinc ribbon domain RA8CHR_04782 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_04784 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RA8CHR_04786 PF00171 Aldehyde dehydrogenase family RA8CHR_04789 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_04790 PF13180 PDZ domain RA8CHR_04793 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_04793 PF00175 Oxidoreductase NAD-binding domain RA8CHR_04793 PF00970 Oxidoreductase FAD-binding domain RA8CHR_04794 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04795 PF00005 ABC transporter RA8CHR_04796 PF00005 ABC transporter RA8CHR_04796 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_04797 PF11862 Domain of unknown function (DUF3382) RA8CHR_04797 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_04798 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_04799 PF12002 MgsA AAA+ ATPase C terminal RA8CHR_04799 PF16193 AAA C-terminal domain RA8CHR_04799 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_04800 PF03548 Outer membrane lipoprotein carrier protein LolA RA8CHR_04801 PF17854 FtsK alpha domain RA8CHR_04801 PF09397 Ftsk gamma domain RA8CHR_04801 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RA8CHR_04801 PF01580 FtsK/SpoIIIE family RA8CHR_04802 PF13545 Crp-like helix-turn-helix domain RA8CHR_04802 PF00027 Cyclic nucleotide-binding domain RA8CHR_04803 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_04804 PF00830 Ribosomal L28 family RA8CHR_04805 PF00471 Ribosomal protein L33 RA8CHR_04807 PF01189 16S rRNA methyltransferase RsmB/F RA8CHR_04807 PF01029 NusB family RA8CHR_04811 PF00551 Formyl transferase RA8CHR_04812 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04812 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04812 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04813 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_04813 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_04813 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_04815 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_04817 PF06574 FAD synthetase RA8CHR_04817 PF01687 Riboflavin kinase RA8CHR_04818 PF08264 Anticodon-binding domain of tRNA RA8CHR_04818 PF00133 tRNA synthetases class I (I, L, M and V) RA8CHR_04818 PF06827 Zinc finger found in FPG and IleRS RA8CHR_04819 PF01252 Signal peptidase (SPase) II RA8CHR_04820 PF02690 Na+/Pi-cotransporter RA8CHR_04821 PF00107 Zinc-binding dehydrogenase RA8CHR_04821 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_04822 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04823 PF01979 Amidohydrolase family RA8CHR_04824 PF01979 Amidohydrolase family RA8CHR_04825 PF00005 ABC transporter RA8CHR_04825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_04826 PF00005 ABC transporter RA8CHR_04826 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_04827 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04828 PF01979 Amidohydrolase family RA8CHR_04829 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_04830 PF03466 LysR substrate binding domain RA8CHR_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04835 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04836 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_04837 PF07331 Tripartite tricarboxylate transporter TctB family RA8CHR_04838 PF00437 Type II/IV secretion system protein RA8CHR_04838 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RA8CHR_04842 PF01026 TatD related DNase RA8CHR_04843 PF00595 PDZ domain RA8CHR_04844 PF17863 AAA lid domain RA8CHR_04844 PF07726 ATPase family associated with various cellular activities (AAA) RA8CHR_04845 PF01882 Protein of unknown function DUF58 RA8CHR_04846 PF13519 von Willebrand factor type A domain RA8CHR_04846 PF07584 Aerotolerance regulator N-terminal RA8CHR_04848 PF03466 LysR substrate binding domain RA8CHR_04848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_04849 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04850 PF13932 GidA associated domain RA8CHR_04850 PF01134 Glucose inhibited division protein A RA8CHR_04855 PF07804 HipA-like C-terminal domain RA8CHR_04855 PF13657 HipA N-terminal domain RA8CHR_04857 PF00005 ABC transporter RA8CHR_04858 PF12704 MacB-like periplasmic core domain RA8CHR_04858 PF02687 FtsX-like permease family RA8CHR_04860 PF02272 DHHA1 domain RA8CHR_04860 PF01368 DHH family RA8CHR_04860 PF17768 RecJ OB domain RA8CHR_04864 PF00072 Response regulator receiver domain RA8CHR_04865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_04865 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_04865 PF01627 Hpt domain RA8CHR_04865 PF00072 Response regulator receiver domain RA8CHR_04866 PF00547 Urease, gamma subunit RA8CHR_04868 PF00699 Urease beta subunit RA8CHR_04869 PF01979 Amidohydrolase family RA8CHR_04869 PF00449 Urease alpha-subunit, N-terminal domain RA8CHR_04871 PF02814 UreE urease accessory protein, N-terminal domain RA8CHR_04871 PF05194 UreE urease accessory protein, C-terminal domain RA8CHR_04872 PF01730 UreF RA8CHR_04873 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA8CHR_04875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_04875 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_04875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_04879 PF01168 Alanine racemase, N-terminal domain RA8CHR_04879 PF14031 Putative serine dehydratase domain RA8CHR_04880 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_04884 PF06969 HemN C-terminal domain RA8CHR_04884 PF04055 Radical SAM superfamily RA8CHR_04885 PF01725 Ham1 family RA8CHR_04886 PF03725 3' exoribonuclease family, domain 2 RA8CHR_04886 PF01138 3' exoribonuclease family, domain 1 RA8CHR_04888 PF00069 Protein kinase domain RA8CHR_04888 PF03793 PASTA domain RA8CHR_04889 PF03755 YicC-like family, N-terminal region RA8CHR_04889 PF08340 Domain of unknown function (DUF1732) RA8CHR_04890 PF00625 Guanylate kinase RA8CHR_04891 PF01192 RNA polymerase Rpb6 RA8CHR_04892 PF13291 ACT domain RA8CHR_04892 PF04607 Region found in RelA / SpoT proteins RA8CHR_04892 PF02824 TGS domain RA8CHR_04893 PF01272 Transcription elongation factor, GreA/GreB, C-term RA8CHR_04893 PF03449 Transcription elongation factor, N-terminal RA8CHR_04930 PF08275 DNA primase catalytic core, N-terminal domain RA8CHR_04930 PF13662 Toprim domain RA8CHR_04930 PF01807 CHC2 zinc finger RA8CHR_04945 PF00075 RNase H RA8CHR_04949 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_04949 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_04951 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8CHR_04958 PF00005 ABC transporter RA8CHR_04960 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04961 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_04978 PF01443 Viral (Superfamily 1) RNA helicase RA8CHR_04978 PF17841 BID domain of Bartonella effector protein (Bep) RA8CHR_04978 PF03389 MobA/MobL family RA8CHR_05010 PF02384 N-6 DNA Methylase RA8CHR_05029 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_05029 PF00114 Pilin (bacterial filament) RA8CHR_05035 PF11798 IMS family HHH motif RA8CHR_05035 PF11799 impB/mucB/samB family C-terminal domain RA8CHR_05035 PF00817 impB/mucB/samB family RA8CHR_05035 PF13438 Domain of unknown function (DUF4113) RA8CHR_05038 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05042 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA8CHR_05042 PF05362 Lon protease (S16) C-terminal proteolytic domain RA8CHR_05042 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_05046 PF10544 T5orf172 domain RA8CHR_05052 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RA8CHR_05052 PF01628 HrcA protein C terminal domain RA8CHR_05053 PF01513 ATP-NAD kinase RA8CHR_05054 PF02463 RecF/RecN/SMC N terminal domain RA8CHR_05055 PF03668 P-loop ATPase protein family RA8CHR_05056 PF00633 Helix-hairpin-helix motif RA8CHR_05056 PF00730 HhH-GPD superfamily base excision DNA repair protein RA8CHR_05056 PF14815 NUDIX domain RA8CHR_05057 PF00350 Dynamin family RA8CHR_05058 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RA8CHR_05058 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RA8CHR_05058 PF06827 Zinc finger found in FPG and IleRS RA8CHR_05061 PF00288 GHMP kinases N terminal domain RA8CHR_05061 PF08544 GHMP kinases C terminal RA8CHR_05063 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RA8CHR_05063 PF14572 Phosphoribosyl synthetase-associated domain RA8CHR_05064 PF01386 Ribosomal L25p family RA8CHR_05064 PF14693 Ribosomal protein TL5, C-terminal domain RA8CHR_05065 PF01195 Peptidyl-tRNA hydrolase RA8CHR_05067 PF00037 4Fe-4S binding domain RA8CHR_05068 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05069 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05069 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_05070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_05070 PF00005 ABC transporter RA8CHR_05071 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_05071 PF00005 ABC transporter RA8CHR_05072 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_05073 PF01425 Amidase RA8CHR_05074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05074 PF03466 LysR substrate binding domain RA8CHR_05080 PF00300 Histidine phosphatase superfamily (branch 1) RA8CHR_05081 PF12697 Alpha/beta hydrolase family RA8CHR_05082 PF17831 Pyruvate dehydrogenase E1 component middle domain RA8CHR_05082 PF00456 Transketolase, thiamine diphosphate binding domain RA8CHR_05083 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA8CHR_05083 PF00364 Biotin-requiring enzyme RA8CHR_05083 PF02817 e3 binding domain RA8CHR_05084 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_05084 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8CHR_05085 PF12697 Alpha/beta hydrolase family RA8CHR_05086 PF01515 Phosphate acetyl/butaryl transferase RA8CHR_05086 PF03949 Malic enzyme, NAD binding domain RA8CHR_05086 PF00390 Malic enzyme, N-terminal domain RA8CHR_05087 PF00375 Sodium:dicarboxylate symporter family RA8CHR_05088 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_05089 PF00108 Thiolase, N-terminal domain RA8CHR_05089 PF02803 Thiolase, C-terminal domain RA8CHR_05090 PF00106 short chain dehydrogenase RA8CHR_05091 PF02743 Cache domain RA8CHR_05091 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05092 PF00072 Response regulator receiver domain RA8CHR_05092 PF02954 Bacterial regulatory protein, Fis family RA8CHR_05092 PF00158 Sigma-54 interaction domain RA8CHR_05093 PF01470 Pyroglutamyl peptidase RA8CHR_05094 PF03746 LamB/YcsF family RA8CHR_05095 PF02626 Carboxyltransferase domain, subdomain A and B RA8CHR_05096 PF02682 Carboxyltransferase domain, subdomain C and D RA8CHR_05097 PF01467 Cytidylyltransferase-like RA8CHR_05099 PF05193 Peptidase M16 inactive domain RA8CHR_05100 PF05193 Peptidase M16 inactive domain RA8CHR_05100 PF00675 Insulinase (Peptidase family M16) RA8CHR_05101 PF02881 SRP54-type protein, helical bundle domain RA8CHR_05101 PF00448 SRP54-type protein, GTPase domain RA8CHR_05103 PF04545 Sigma-70, region 4 RA8CHR_05103 PF04542 Sigma-70 region 2 RA8CHR_05103 PF00140 Sigma-70 factor, region 1.2 RA8CHR_05104 PF02630 SCO1/SenC RA8CHR_05105 PF01040 UbiA prenyltransferase family RA8CHR_05110 PF00510 Cytochrome c oxidase subunit III RA8CHR_05112 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 RA8CHR_05114 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8CHR_05115 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RA8CHR_05115 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RA8CHR_05117 PF08241 Methyltransferase domain RA8CHR_05119 PF00588 SpoU rRNA Methylase family RA8CHR_05120 PF01575 MaoC like domain RA8CHR_05121 PF01883 Iron-sulfur cluster assembly protein RA8CHR_05121 PF10609 NUBPL iron-transfer P-loop NTPase RA8CHR_05122 PF02525 Flavodoxin-like fold RA8CHR_05123 PF00999 Sodium/hydrogen exchanger family RA8CHR_05123 PF02254 TrkA-N domain RA8CHR_05125 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05126 PF00550 Phosphopantetheine attachment site RA8CHR_05126 PF07993 Male sterility protein RA8CHR_05126 PF00501 AMP-binding enzyme RA8CHR_05127 PF00106 short chain dehydrogenase RA8CHR_05128 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05129 PF07519 Tannase and feruloyl esterase RA8CHR_05130 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05130 PF12806 Acetyl-CoA dehydrogenase C-terminal like RA8CHR_05130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05135 PF01139 tRNA-splicing ligase RtcB RA8CHR_05136 PF02423 Ornithine cyclodeaminase/mu-crystallin family RA8CHR_05137 PF00108 Thiolase, N-terminal domain RA8CHR_05137 PF02803 Thiolase, C-terminal domain RA8CHR_05138 PF01144 Coenzyme A transferase RA8CHR_05139 PF01144 Coenzyme A transferase RA8CHR_05140 PF01614 Bacterial transcriptional regulator RA8CHR_05140 PF09339 IclR helix-turn-helix domain RA8CHR_05144 PF01266 FAD dependent oxidoreductase RA8CHR_05145 PF00216 Bacterial DNA-binding protein RA8CHR_05147 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_05149 PF05853 beta-keto acid cleavage enzyme RA8CHR_05150 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05151 PF01614 Bacterial transcriptional regulator RA8CHR_05151 PF09339 IclR helix-turn-helix domain RA8CHR_05152 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05153 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_05154 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05155 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RA8CHR_05157 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_05157 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_05158 PF05853 beta-keto acid cleavage enzyme RA8CHR_05164 PF01168 Alanine racemase, N-terminal domain RA8CHR_05164 PF00842 Alanine racemase, C-terminal domain RA8CHR_05166 PF01266 FAD dependent oxidoreductase RA8CHR_05167 PF00171 Aldehyde dehydrogenase family RA8CHR_05168 PF00202 Aminotransferase class-III RA8CHR_05169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05169 PF03466 LysR substrate binding domain RA8CHR_05170 PF00842 Alanine racemase, C-terminal domain RA8CHR_05170 PF01168 Alanine racemase, N-terminal domain RA8CHR_05173 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05174 PF02656 Domain of unknown function (DUF202) RA8CHR_05178 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RA8CHR_05180 PF01112 Asparaginase RA8CHR_05181 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA8CHR_05181 PF00005 ABC transporter RA8CHR_05182 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA8CHR_05183 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05184 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05184 PF12911 N-terminal TM domain of oligopeptide transport permease C RA8CHR_05185 PF03576 Peptidase family S58 RA8CHR_05192 PF03472 Autoinducer binding domain RA8CHR_05192 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05196 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_05198 PF00005 ABC transporter RA8CHR_05199 PF00005 ABC transporter RA8CHR_05201 PF00465 Iron-containing alcohol dehydrogenase RA8CHR_05202 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05203 PF00171 Aldehyde dehydrogenase family RA8CHR_05205 PF00034 Cytochrome c RA8CHR_05211 PF03466 LysR substrate binding domain RA8CHR_05211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05212 PF00775 Dioxygenase RA8CHR_05212 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RA8CHR_05214 PF00034 Cytochrome c RA8CHR_05215 PF17862 AAA+ lid domain RA8CHR_05215 PF01434 Peptidase family M41 RA8CHR_05215 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_05221 PF04357 TamB, inner membrane protein subunit of TAM complex RA8CHR_05223 PF00589 Phage integrase family RA8CHR_05223 PF13356 Arm DNA-binding domain RA8CHR_05241 PF01467 Cytidylyltransferase-like RA8CHR_05244 PF01553 Acyltransferase RA8CHR_05245 PF01979 Amidohydrolase family RA8CHR_05246 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RA8CHR_05246 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RA8CHR_05247 PF00156 Phosphoribosyl transferase domain RA8CHR_05248 PF03652 Holliday junction resolvase RA8CHR_05249 PF02622 Uncharacterized ACR, COG1678 RA8CHR_05250 PF03441 FAD binding domain of DNA photolyase RA8CHR_05250 PF00875 DNA photolyase RA8CHR_05251 PF02895 Signal transducing histidine kinase, homodimeric domain RA8CHR_05251 PF00072 Response regulator receiver domain RA8CHR_05251 PF01627 Hpt domain RA8CHR_05251 PF01584 CheW-like domain RA8CHR_05251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA8CHR_05252 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RA8CHR_05254 PF00072 Response regulator receiver domain RA8CHR_05255 PF00072 Response regulator receiver domain RA8CHR_05257 PF00202 Aminotransferase class-III RA8CHR_05258 PF02142 MGS-like domain RA8CHR_05258 PF01808 AICARFT/IMPCHase bienzyme RA8CHR_05259 PF02954 Bacterial regulatory protein, Fis family RA8CHR_05260 PF01207 Dihydrouridine synthase (Dus) RA8CHR_05261 PF09335 SNARE associated Golgi protein RA8CHR_05262 PF01926 50S ribosome-binding GTPase RA8CHR_05262 PF06071 Protein of unknown function (DUF933) RA8CHR_05263 PF03476 MOSC N-terminal beta barrel domain RA8CHR_05263 PF03473 MOSC domain RA8CHR_05263 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_05264 PF01494 FAD binding domain RA8CHR_05265 PF13098 Thioredoxin-like domain RA8CHR_05265 PF10411 Disulfide bond isomerase protein N-terminus RA8CHR_05267 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05275 PF04101 Glycosyltransferase family 28 C-terminal domain RA8CHR_05275 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RA8CHR_05278 PF05496 Holliday junction DNA helicase RuvB P-loop domain RA8CHR_05278 PF05491 RuvB C-terminal winged helix domain RA8CHR_05278 PF17864 RuvB AAA lid domain RA8CHR_05279 PF01066 CDP-alcohol phosphatidyltransferase RA8CHR_05280 PF12146 Serine aminopeptidase, S33 RA8CHR_05280 PF12147 Putative methyltransferase RA8CHR_05281 PF00782 Dual specificity phosphatase, catalytic domain RA8CHR_05285 PF07499 RuvA, C-terminal domain RA8CHR_05285 PF01330 RuvA N terminal domain RA8CHR_05286 PF02562 PhoH-like protein RA8CHR_05287 PF02130 Uncharacterized protein family UPF0054 RA8CHR_05288 PF02580 D-Tyr-tRNA(Tyr) deacylase RA8CHR_05289 PF01545 Cation efflux family RA8CHR_05289 PF16916 Dimerisation domain of Zinc Transporter RA8CHR_05292 PF01479 S4 domain RA8CHR_05292 PF00579 tRNA synthetases class I (W and Y) RA8CHR_05293 PF01551 Peptidase family M23 RA8CHR_05293 PF04225 Opacity-associated protein A LysM-like domain RA8CHR_05294 PF03702 Anhydro-N-acetylmuramic acid kinase RA8CHR_05295 PF07690 Major Facilitator Superfamily RA8CHR_05296 PF01521 Iron-sulphur cluster biosynthesis RA8CHR_05297 PF00380 Ribosomal protein S9/S16 RA8CHR_05298 PF00572 Ribosomal protein L13 RA8CHR_05299 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RA8CHR_05300 PF03330 Lytic transglycolase RA8CHR_05301 PF02219 Methylenetetrahydrofolate reductase RA8CHR_05302 PF01479 S4 domain RA8CHR_05302 PF01728 FtsJ-like methyltransferase RA8CHR_05303 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RA8CHR_05303 PF05221 S-adenosyl-L-homocysteine hydrolase RA8CHR_05304 PF03144 Elongation factor Tu domain 2 RA8CHR_05304 PF00009 Elongation factor Tu GTP binding domain RA8CHR_05304 PF16658 Class II release factor RF3, C-terminal domain RA8CHR_05307 PF00085 Thioredoxin RA8CHR_05309 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05311 PF00005 ABC transporter RA8CHR_05311 PF17760 UvrA interaction domain RA8CHR_05311 PF17755 UvrA DNA-binding domain RA8CHR_05313 PF08946 Osmosensory transporter coiled coil RA8CHR_05313 PF00083 Sugar (and other) transporter RA8CHR_05317 PF00682 HMGL-like RA8CHR_05318 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8CHR_05319 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA8CHR_05319 PF00364 Biotin-requiring enzyme RA8CHR_05319 PF00289 Biotin carboxylase, N-terminal domain RA8CHR_05319 PF02785 Biotin carboxylase C-terminal domain RA8CHR_05320 PF04055 Radical SAM superfamily RA8CHR_05320 PF06968 Biotin and Thiamin Synthesis associated domain RA8CHR_05323 PF00155 Aminotransferase class I and II RA8CHR_05324 PF00202 Aminotransferase class-III RA8CHR_05326 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05328 PF01039 Carboxyl transferase domain RA8CHR_05329 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05329 PF00501 AMP-binding enzyme RA8CHR_05330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05330 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05333 PF13419 Haloacid dehalogenase-like hydrolase RA8CHR_05334 PF13667 ThiC-associated domain RA8CHR_05334 PF01964 Radical SAM ThiC family RA8CHR_05342 PF01425 Amidase RA8CHR_05343 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05343 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05343 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05345 PF00108 Thiolase, N-terminal domain RA8CHR_05345 PF02803 Thiolase, C-terminal domain RA8CHR_05346 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RA8CHR_05347 PF00484 Carbonic anhydrase RA8CHR_05348 PF13411 MerR HTH family regulatory protein RA8CHR_05351 PF00849 RNA pseudouridylate synthase RA8CHR_05352 PF00072 Response regulator receiver domain RA8CHR_05352 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05353 PF00672 HAMP domain RA8CHR_05353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05353 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05358 PF02092 Glycyl-tRNA synthetase beta subunit RA8CHR_05358 PF05746 DALR anticodon binding domain RA8CHR_05359 PF02091 Glycyl-tRNA synthetase alpha subunit RA8CHR_05360 PF17763 Glutaminase/Asparaginase C-terminal domain RA8CHR_05360 PF00710 Asparaginase, N-terminal RA8CHR_05363 PF03358 NADPH-dependent FMN reductase RA8CHR_05364 PF01758 Sodium Bile acid symporter family RA8CHR_05368 PF02525 Flavodoxin-like fold RA8CHR_05369 PF02633 Creatinine amidohydrolase RA8CHR_05371 PF00005 ABC transporter RA8CHR_05372 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05374 PF00795 Carbon-nitrogen hydrolase RA8CHR_05375 PF00571 CBS domain RA8CHR_05375 PF03471 Transporter associated domain RA8CHR_05377 PF01037 Lrp/AsnC ligand binding domain RA8CHR_05378 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_05379 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_05380 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RA8CHR_05382 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05382 PF00501 AMP-binding enzyme RA8CHR_05390 PF13091 PLD-like domain RA8CHR_05391 PF00155 Aminotransferase class I and II RA8CHR_05393 PF00892 EamA-like transporter family RA8CHR_05394 PF00155 Aminotransferase class I and II RA8CHR_05395 PF01810 LysE type translocator RA8CHR_05396 PF13417 Glutathione S-transferase, N-terminal domain RA8CHR_05396 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_05397 PF02567 Phenazine biosynthesis-like protein RA8CHR_05399 PF00291 Pyridoxal-phosphate dependent enzyme RA8CHR_05401 PF00775 Dioxygenase RA8CHR_05401 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RA8CHR_05402 PF03797 Autotransporter beta-domain RA8CHR_05402 PF13018 Extended Signal Peptide of Type V secretion system RA8CHR_05402 PF16168 Adhesin of bacterial autotransporter system, probable stalk RA8CHR_05404 PF03091 CutA1 divalent ion tolerance protein RA8CHR_05407 PF01161 Phosphatidylethanolamine-binding protein RA8CHR_05408 PF02633 Creatinine amidohydrolase RA8CHR_05410 PF07995 Glucose / Sorbosone dehydrogenase RA8CHR_05411 PF02272 DHHA1 domain RA8CHR_05411 PF01411 tRNA synthetases class II (A) RA8CHR_05411 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RA8CHR_05412 PF02683 Cytochrome C biogenesis protein transmembrane region RA8CHR_05412 PF11412 Disulphide bond corrector protein DsbC RA8CHR_05413 PF00578 AhpC/TSA family RA8CHR_05414 PF01208 Uroporphyrinogen decarboxylase (URO-D) RA8CHR_05415 PF17764 3′ DNA-binding domain (3′BD) RA8CHR_05415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RA8CHR_05415 PF00271 Helicase conserved C-terminal domain RA8CHR_05415 PF00270 DEAD/DEAH box helicase RA8CHR_05415 PF18074 Primosomal protein N C-terminal domain RA8CHR_05418 PF03547 Membrane transport protein RA8CHR_05419 PF13361 UvrD-like helicase C-terminal domain RA8CHR_05419 PF00580 UvrD/REP helicase N-terminal domain RA8CHR_05421 PF02253 Phospholipase A1 RA8CHR_05423 PF00890 FAD binding domain RA8CHR_05424 PF01613 Flavin reductase like domain RA8CHR_05428 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_05428 PF07729 FCD domain RA8CHR_05430 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_05430 PF07729 FCD domain RA8CHR_05431 PF02515 CoA-transferase family III RA8CHR_05434 PF07729 FCD domain RA8CHR_05434 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_05435 PF00501 AMP-binding enzyme RA8CHR_05435 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05436 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05440 PF02803 Thiolase, C-terminal domain RA8CHR_05440 PF00108 Thiolase, N-terminal domain RA8CHR_05441 PF00881 Nitroreductase family RA8CHR_05442 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05444 PF02515 CoA-transferase family III RA8CHR_05446 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05447 PF08990 Erythronolide synthase docking RA8CHR_05447 PF08659 KR domain RA8CHR_05447 PF16197 Ketoacyl-synthetase C-terminal extension RA8CHR_05447 PF14765 Polyketide synthase dehydratase RA8CHR_05447 PF00550 Phosphopantetheine attachment site RA8CHR_05447 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_05447 PF00698 Acyl transferase domain RA8CHR_05447 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8CHR_05447 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8CHR_05448 PF07729 FCD domain RA8CHR_05448 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_05449 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05449 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05449 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05450 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05451 PF00501 AMP-binding enzyme RA8CHR_05451 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05452 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05453 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05454 PF03060 Nitronate monooxygenase RA8CHR_05457 PF00248 Aldo/keto reductase family RA8CHR_05458 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05460 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05461 PF02515 CoA-transferase family III RA8CHR_05463 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05463 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05463 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05465 PF00005 ABC transporter RA8CHR_05466 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_05466 PF00005 ABC transporter RA8CHR_05467 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_05469 PF00107 Zinc-binding dehydrogenase RA8CHR_05469 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_05471 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05472 PF01575 MaoC like domain RA8CHR_05473 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05477 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05478 PF00355 Rieske [2Fe-2S] domain RA8CHR_05479 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_05479 PF00970 Oxidoreductase FAD-binding domain RA8CHR_05483 PF02086 D12 class N6 adenine-specific DNA methyltransferase RA8CHR_05484 PF02086 D12 class N6 adenine-specific DNA methyltransferase RA8CHR_05487 PF00239 Resolvase, N terminal domain RA8CHR_05487 PF02796 Helix-turn-helix domain of resolvase RA8CHR_05492 PF00158 Sigma-54 interaction domain RA8CHR_05492 PF02954 Bacterial regulatory protein, Fis family RA8CHR_05492 PF00072 Response regulator receiver domain RA8CHR_05493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05493 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05493 PF00989 PAS fold RA8CHR_05493 PF00672 HAMP domain RA8CHR_05495 PF01029 NusB family RA8CHR_05495 PF01189 16S rRNA methyltransferase RsmB/F RA8CHR_05497 PF05000 RNA polymerase Rpb1, domain 4 RA8CHR_05497 PF04983 RNA polymerase Rpb1, domain 3 RA8CHR_05497 PF04998 RNA polymerase Rpb1, domain 5 RA8CHR_05497 PF00623 RNA polymerase Rpb1, domain 2 RA8CHR_05497 PF04997 RNA polymerase Rpb1, domain 1 RA8CHR_05498 PF04565 RNA polymerase Rpb2, domain 3 RA8CHR_05498 PF04563 RNA polymerase beta subunit RA8CHR_05498 PF04561 RNA polymerase Rpb2, domain 2 RA8CHR_05498 PF04560 RNA polymerase Rpb2, domain 7 RA8CHR_05498 PF10385 RNA polymerase beta subunit external 1 domain RA8CHR_05498 PF00562 RNA polymerase Rpb2, domain 6 RA8CHR_05499 PF00542 Ribosomal protein L7/L12 C-terminal domain RA8CHR_05499 PF16320 Ribosomal protein L7/L12 dimerisation domain RA8CHR_05500 PF00466 Ribosomal protein L10 RA8CHR_05501 PF00687 Ribosomal protein L1p/L10e family RA8CHR_05502 PF00298 Ribosomal protein L11, RNA binding domain RA8CHR_05502 PF03946 Ribosomal protein L11, N-terminal domain RA8CHR_05503 PF02357 Transcription termination factor nusG RA8CHR_05503 PF00467 KOW motif RA8CHR_05504 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RA8CHR_05506 PF03144 Elongation factor Tu domain 2 RA8CHR_05506 PF03143 Elongation factor Tu C-terminal domain RA8CHR_05506 PF00009 Elongation factor Tu GTP binding domain RA8CHR_05510 PF03167 Uracil DNA glycosylase superfamily RA8CHR_05511 PF00218 Indole-3-glycerol phosphate synthase RA8CHR_05512 PF00591 Glycosyl transferase family, a/b domain RA8CHR_05512 PF02885 Glycosyl transferase family, helical bundle domain RA8CHR_05513 PF01810 LysE type translocator RA8CHR_05514 PF01212 Beta-eliminating lyase RA8CHR_05515 PF00117 Glutamine amidotransferase class-I RA8CHR_05517 PF00425 chorismate binding enzyme RA8CHR_05517 PF04715 Anthranilate synthase component I, N terminal region RA8CHR_05519 PF00106 short chain dehydrogenase RA8CHR_05521 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05521 PF00501 AMP-binding enzyme RA8CHR_05522 PF00005 ABC transporter RA8CHR_05524 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_05524 PF00005 ABC transporter RA8CHR_05525 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_05528 PF00355 Rieske [2Fe-2S] domain RA8CHR_05528 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_05529 PF13458 Periplasmic binding protein RA8CHR_05532 PF04199 Putative cyclase RA8CHR_05535 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05535 PF00501 AMP-binding enzyme RA8CHR_05537 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8CHR_05537 PF00355 Rieske [2Fe-2S] domain RA8CHR_05538 PF00175 Oxidoreductase NAD-binding domain RA8CHR_05538 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8CHR_05542 PF04227 Indigoidine synthase A like protein RA8CHR_05543 PF00107 Zinc-binding dehydrogenase RA8CHR_05543 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_05544 PF00561 alpha/beta hydrolase fold RA8CHR_05545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA8CHR_05545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA8CHR_05547 PF13419 Haloacid dehalogenase-like hydrolase RA8CHR_05548 PF03472 Autoinducer binding domain RA8CHR_05548 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05550 PF00765 Autoinducer synthase RA8CHR_05552 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_05552 PF00072 Response regulator receiver domain RA8CHR_05557 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05557 PF00072 Response regulator receiver domain RA8CHR_05572 PF04717 Type VI secretion system, phage-baseplate injector RA8CHR_05574 PF07724 AAA domain (Cdc48 subfamily) RA8CHR_05574 PF00004 ATPase family associated with various cellular activities (AAA) RA8CHR_05574 PF10431 C-terminal, D2-small domain, of ClpB protein RA8CHR_05574 PF17871 AAA lid domain RA8CHR_05582 PF00069 Protein kinase domain RA8CHR_05585 PF13677 Membrane MotB of proton-channel complex MotA/MotB RA8CHR_05585 PF00691 OmpA family RA8CHR_05590 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RA8CHR_05590 PF17287 POTRA domain RA8CHR_05590 PF08479 POTRA domain, ShlB-type RA8CHR_05593 PF18415 Histidine kinase receptor ArcB trans-membrane domain RA8CHR_05593 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05595 PF08446 PAS fold RA8CHR_05595 PF01590 GAF domain RA8CHR_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05595 PF00360 Phytochrome region RA8CHR_05596 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05596 PF03466 LysR substrate binding domain RA8CHR_05600 PF05746 DALR anticodon binding domain RA8CHR_05600 PF00750 tRNA synthetases class I (R) RA8CHR_05600 PF03485 Arginyl tRNA synthetase N terminal domain RA8CHR_05602 PF13462 Thioredoxin RA8CHR_05603 PF03968 OstA-like protein RA8CHR_05604 PF00005 ABC transporter RA8CHR_05605 PF00309 Sigma-54 factor, Activator interacting domain (AID) RA8CHR_05605 PF04552 Sigma-54, DNA binding domain RA8CHR_05605 PF04963 Sigma-54 factor, core binding domain RA8CHR_05606 PF13091 PLD-like domain RA8CHR_05614 PF17200 Single Cache domain 2 RA8CHR_05614 PF07730 Histidine kinase RA8CHR_05615 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05615 PF00072 Response regulator receiver domain RA8CHR_05616 PF02926 THUMP domain RA8CHR_05616 PF01170 Putative RNA methylase family UPF0020 RA8CHR_05619 PF00571 CBS domain RA8CHR_05619 PF01380 SIS domain RA8CHR_05620 PF00182 Chitinase class I RA8CHR_05623 PF07516 SecA Wing and Scaffold domain RA8CHR_05623 PF02810 SEC-C motif RA8CHR_05623 PF07517 SecA DEAD-like domain RA8CHR_05623 PF01043 SecA preprotein cross-linking domain RA8CHR_05627 PF02464 Competence-damaged protein RA8CHR_05628 PF04608 Phosphatidylglycerophosphatase A RA8CHR_05629 PF13649 Methyltransferase domain RA8CHR_05630 PF01209 ubiE/COQ5 methyltransferase family RA8CHR_05631 PF08241 Methyltransferase domain RA8CHR_05634 PF12833 Helix-turn-helix domain RA8CHR_05634 PF12852 Cupin RA8CHR_05635 PF01494 FAD binding domain RA8CHR_05636 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05637 PF03466 LysR substrate binding domain RA8CHR_05637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05639 PF00072 Response regulator receiver domain RA8CHR_05639 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05640 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05640 PF01627 Hpt domain RA8CHR_05640 PF00672 HAMP domain RA8CHR_05640 PF00072 Response regulator receiver domain RA8CHR_05644 PF01381 Helix-turn-helix RA8CHR_05645 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_05646 PF03480 Bacterial extracellular solute-binding protein, family 7 RA8CHR_05648 PF00586 AIR synthase related protein, N-terminal domain RA8CHR_05648 PF02769 AIR synthase related protein, C-terminal domain RA8CHR_05649 PF04107 Glutamate-cysteine ligase family 2(GCS2) RA8CHR_05651 PF04379 ApaG domain RA8CHR_05652 PF00834 Ribulose-phosphate 3 epimerase family RA8CHR_05658 PF13609 Gram-negative porin RA8CHR_05659 PF00672 HAMP domain RA8CHR_05659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05659 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05660 PF00072 Response regulator receiver domain RA8CHR_05660 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_05663 PF01068 ATP dependent DNA ligase domain RA8CHR_05663 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_05663 PF13298 DNA polymerase Ligase (LigD) RA8CHR_05665 PF00199 Catalase RA8CHR_05665 PF06628 Catalase-related immune-responsive RA8CHR_05665 PF18011 C-terminal domain found in long catalases RA8CHR_05667 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_05667 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_05668 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8CHR_05669 PF13378 Enolase C-terminal domain-like RA8CHR_05670 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05671 PF00356 Bacterial regulatory proteins, lacI family RA8CHR_05672 PF00069 Protein kinase domain RA8CHR_05672 PF03793 PASTA domain RA8CHR_05677 PF08479 POTRA domain, ShlB-type RA8CHR_05677 PF17287 POTRA domain RA8CHR_05677 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RA8CHR_05678 PF05860 haemagglutination activity domain RA8CHR_05682 PF02515 CoA-transferase family III RA8CHR_05683 PF00682 HMGL-like RA8CHR_05684 PF01614 Bacterial transcriptional regulator RA8CHR_05684 PF09339 IclR helix-turn-helix domain RA8CHR_05685 PF00155 Aminotransferase class I and II RA8CHR_05686 PF01274 Malate synthase RA8CHR_05688 PF17516 ProQ C-terminal domain RA8CHR_05688 PF04352 ProQ/FINO family RA8CHR_05691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05691 PF03466 LysR substrate binding domain RA8CHR_05693 PF02803 Thiolase, C-terminal domain RA8CHR_05693 PF00108 Thiolase, N-terminal domain RA8CHR_05694 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_05695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_05695 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_05695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_05696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05696 PF03466 LysR substrate binding domain RA8CHR_05698 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05699 PF00365 Phosphofructokinase RA8CHR_05700 PF15887 Putative zinc-binding metallo-peptidase RA8CHR_05700 PF10005 zinc-ribbon domain RA8CHR_05701 PF07690 Major Facilitator Superfamily RA8CHR_05702 PF13230 Glutamine amidotransferases class-II RA8CHR_05703 PF00593 TonB dependent receptor RA8CHR_05703 PF07715 TonB-dependent Receptor Plug Domain RA8CHR_05704 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RA8CHR_05704 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RA8CHR_05705 PF03594 Benzoate membrane transport protein RA8CHR_05706 PF02705 K+ potassium transporter RA8CHR_05708 PF00171 Aldehyde dehydrogenase family RA8CHR_05709 PF14840 Processivity clamp loader gamma complex DNA pol III C-term RA8CHR_05709 PF06144 DNA polymerase III, delta subunit RA8CHR_05711 PF09334 tRNA synthetases class I (M) RA8CHR_05711 PF13603 Leucyl-tRNA synthetase, Domain 2 RA8CHR_05711 PF08264 Anticodon-binding domain of tRNA RA8CHR_05711 PF00133 tRNA synthetases class I (I, L, M and V) RA8CHR_05712 PF02472 Biopolymer transport protein ExbD/TolR RA8CHR_05713 PF01618 MotA/TolQ/ExbB proton channel family RA8CHR_05714 PF01113 Dihydrodipicolinate reductase, N-terminus RA8CHR_05714 PF05173 Dihydrodipicolinate reductase, C-terminus RA8CHR_05715 PF04355 SmpA / OmlA family RA8CHR_05716 PF01475 Ferric uptake regulator family RA8CHR_05717 PF07475 HPr Serine kinase C-terminal domain RA8CHR_05717 PF02603 HPr Serine kinase N terminus RA8CHR_05718 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA8CHR_05719 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RA8CHR_05720 PF00580 UvrD/REP helicase N-terminal domain RA8CHR_05720 PF13361 UvrD-like helicase C-terminal domain RA8CHR_05721 PF01544 CorA-like Mg2+ transporter protein RA8CHR_05722 PF01048 Phosphorylase superfamily RA8CHR_05723 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_05723 PF00501 AMP-binding enzyme RA8CHR_05724 PF02233 NAD(P) transhydrogenase beta subunit RA8CHR_05725 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RA8CHR_05726 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RA8CHR_05726 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RA8CHR_05727 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_05727 PF00072 Response regulator receiver domain RA8CHR_05731 PF06974 Protein of unknown function (DUF1298) RA8CHR_05731 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RA8CHR_05732 PF00296 Luciferase-like monooxygenase RA8CHR_05734 PF02719 Polysaccharide biosynthesis protein RA8CHR_05736 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8CHR_05737 PF00132 Bacterial transferase hexapeptide (six repeats) RA8CHR_05737 PF14602 Hexapeptide repeat of succinyl-transferase RA8CHR_05737 PF17836 PglD N-terminal domain RA8CHR_05738 PF02397 Bacterial sugar transferase RA8CHR_05740 PF13439 Glycosyltransferase Family 4 RA8CHR_05741 PF02706 Chain length determinant protein RA8CHR_05741 PF13614 AAA domain RA8CHR_05741 PF13807 G-rich domain on putative tyrosine kinase RA8CHR_05742 PF01451 Low molecular weight phosphotyrosine protein phosphatase RA8CHR_05743 PF10531 SLBB domain RA8CHR_05743 PF02563 Polysaccharide biosynthesis/export protein RA8CHR_05744 PF00436 Single-strand binding protein family RA8CHR_05745 PF00654 Voltage gated chloride channel RA8CHR_05746 PF17760 UvrA interaction domain RA8CHR_05746 PF17755 UvrA DNA-binding domain RA8CHR_05747 PF00137 ATP synthase subunit C RA8CHR_05748 PF00892 EamA-like transporter family RA8CHR_05750 PF04324 BFD-like [2Fe-2S] binding domain RA8CHR_05750 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_05751 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05752 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05753 PF01494 FAD binding domain RA8CHR_05754 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_05755 PF07883 Cupin domain RA8CHR_05756 PF03466 LysR substrate binding domain RA8CHR_05756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05758 PF00672 HAMP domain RA8CHR_05758 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RA8CHR_05758 PF00072 Response regulator receiver domain RA8CHR_05758 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05758 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05758 PF01627 Hpt domain RA8CHR_05758 PF00072 Response regulator receiver domain RA8CHR_05758 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RA8CHR_05758 PF00672 HAMP domain RA8CHR_05758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05758 PF01627 Hpt domain RA8CHR_05759 PF00072 Response regulator receiver domain RA8CHR_05759 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8CHR_05759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05759 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05759 PF01627 Hpt domain RA8CHR_05759 PF00989 PAS fold RA8CHR_05760 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_05760 PF00072 Response regulator receiver domain RA8CHR_05761 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_05762 PF04209 homogentisate 1,2-dioxygenase RA8CHR_05764 PF01494 FAD binding domain RA8CHR_05774 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RA8CHR_05776 PF00583 Acetyltransferase (GNAT) family RA8CHR_05777 PF00814 Glycoprotease family RA8CHR_05780 PF01300 Telomere recombination RA8CHR_05780 PF03481 Putative GTP-binding controlling metal-binding RA8CHR_05781 PF02222 ATP-grasp domain RA8CHR_05781 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RA8CHR_05782 PF00731 AIR carboxylase RA8CHR_05783 PF00085 Thioredoxin RA8CHR_05785 PF00027 Cyclic nucleotide-binding domain RA8CHR_05785 PF13545 Crp-like helix-turn-helix domain RA8CHR_05787 PF01259 SAICAR synthetase RA8CHR_05788 PF01116 Fructose-bisphosphate aldolase class-II RA8CHR_05789 PF02887 Pyruvate kinase, alpha/beta domain RA8CHR_05789 PF00224 Pyruvate kinase, barrel domain RA8CHR_05790 PF00162 Phosphoglycerate kinase RA8CHR_05791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05791 PF03466 LysR substrate binding domain RA8CHR_05794 PF01494 FAD binding domain RA8CHR_05798 PF02911 Formyl transferase, C-terminal domain RA8CHR_05798 PF00551 Formyl transferase RA8CHR_05800 PF01327 Polypeptide deformylase RA8CHR_05802 PF02481 DNA recombination-mediator protein A RA8CHR_05802 PF17782 DprA winged helix domain RA8CHR_05803 PF04361 Protein of unknown function (DUF494) RA8CHR_05805 PF07549 SecD/SecF GG Motif RA8CHR_05805 PF02355 Protein export membrane protein RA8CHR_05806 PF07549 SecD/SecF GG Motif RA8CHR_05806 PF13721 SecD export protein N-terminal TM region RA8CHR_05806 PF02355 Protein export membrane protein RA8CHR_05807 PF02699 Preprotein translocase subunit RA8CHR_05810 PF01037 Lrp/AsnC ligand binding domain RA8CHR_05811 PF05977 Transmembrane secretion effector RA8CHR_05812 PF02082 Transcriptional regulator RA8CHR_05813 PF01494 FAD binding domain RA8CHR_05819 PF01042 Endoribonuclease L-PSP RA8CHR_05820 PF01261 Xylose isomerase-like TIM barrel RA8CHR_05821 PF00596 Class II Aldolase and Adducin N-terminal domain RA8CHR_05822 PF07005 Sugar-binding N-terminal domain RA8CHR_05822 PF17042 Nucleotide-binding C-terminal domain RA8CHR_05823 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8CHR_05823 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8CHR_05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05825 PF03466 LysR substrate binding domain RA8CHR_05827 PF03466 LysR substrate binding domain RA8CHR_05827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05828 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA8CHR_05828 PF02558 Ketopantoate reductase PanE/ApbA RA8CHR_05829 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_05830 PF00549 CoA-ligase RA8CHR_05830 PF02629 CoA binding domain RA8CHR_05831 PF08442 ATP-grasp domain RA8CHR_05831 PF00549 CoA-ligase RA8CHR_05833 PF02515 CoA-transferase family III RA8CHR_05834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05834 PF00989 PAS fold RA8CHR_05834 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05835 PF02515 CoA-transferase family III RA8CHR_05836 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8CHR_05836 PF00205 Thiamine pyrophosphate enzyme, central domain RA8CHR_05836 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8CHR_05839 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_05845 PF03880 DbpA RNA binding domain RA8CHR_05845 PF00270 DEAD/DEAH box helicase RA8CHR_05845 PF00271 Helicase conserved C-terminal domain RA8CHR_05846 PF01176 Translation initiation factor 1A / IF-1 RA8CHR_05847 PF13180 PDZ domain RA8CHR_05849 PF07722 Peptidase C26 RA8CHR_05851 PF01751 Toprim domain RA8CHR_05851 PF01131 DNA topoisomerase RA8CHR_05853 PF02237 Biotin protein ligase C terminal domain RA8CHR_05853 PF08279 HTH domain RA8CHR_05853 PF03099 Biotin/lipoate A/B protein ligase family RA8CHR_05855 PF08521 Two-component sensor kinase N-terminal RA8CHR_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05855 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05856 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_05856 PF00072 Response regulator receiver domain RA8CHR_05858 PF00154 recA bacterial DNA recombination protein RA8CHR_05859 PF02631 RecX family RA8CHR_05860 PF01118 Semialdehyde dehydrogenase, NAD binding domain RA8CHR_05861 PF00549 CoA-ligase RA8CHR_05861 PF08442 ATP-grasp domain RA8CHR_05862 PF00549 CoA-ligase RA8CHR_05862 PF02629 CoA binding domain RA8CHR_05863 PF03741 Integral membrane protein TerC family RA8CHR_05865 PF16697 Inner membrane component of T3SS, cytoplasmic domain RA8CHR_05866 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_05868 PF00114 Pilin (bacterial filament) RA8CHR_05868 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_05870 PF11846 Virulence factor membrane-bound polymerase, C-terminal RA8CHR_05870 PF04932 O-Antigen ligase RA8CHR_05870 PF15864 Protein glycosylation ligase RA8CHR_05871 PF02719 Polysaccharide biosynthesis protein RA8CHR_05875 PF08241 Methyltransferase domain RA8CHR_05877 PF13439 Glycosyltransferase Family 4 RA8CHR_05878 PF00535 Glycosyl transferase family 2 RA8CHR_05880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8CHR_05881 PF02397 Bacterial sugar transferase RA8CHR_05882 PF05567 Neisseria PilC beta-propeller domain RA8CHR_05887 PF07963 Prokaryotic N-terminal methylation motif RA8CHR_05887 PF00114 Pilin (bacterial filament) RA8CHR_05889 PF01967 MoaC family RA8CHR_05890 PF13181 Tetratricopeptide repeat RA8CHR_05890 PF01435 Peptidase family M48 RA8CHR_05891 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RA8CHR_05893 PF03741 Integral membrane protein TerC family RA8CHR_05897 PF07152 YaeQ protein RA8CHR_05898 PF08328 Adenylosuccinate lyase C-terminal RA8CHR_05898 PF00206 Lyase RA8CHR_05900 PF05987 Bacterial protein of unknown function (DUF898) RA8CHR_05901 PF13417 Glutathione S-transferase, N-terminal domain RA8CHR_05901 PF00043 Glutathione S-transferase, C-terminal domain RA8CHR_05902 PF00255 Glutathione peroxidase RA8CHR_05904 PF12680 SnoaL-like domain RA8CHR_05904 PF04542 Sigma-70 region 2 RA8CHR_05904 PF08281 Sigma-70, region 4 RA8CHR_05905 PF03330 Lytic transglycolase RA8CHR_05905 PF05036 Sporulation related domain RA8CHR_05906 PF08335 GlnD PII-uridylyltransferase RA8CHR_05906 PF03710 Glutamate-ammonia ligase adenylyltransferase RA8CHR_05908 PF00795 Carbon-nitrogen hydrolase RA8CHR_05909 PF00989 PAS fold RA8CHR_05909 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05910 PF00196 Bacterial regulatory proteins, luxR family RA8CHR_05910 PF00072 Response regulator receiver domain RA8CHR_05917 PF00892 EamA-like transporter family RA8CHR_05918 PF01040 UbiA prenyltransferase family RA8CHR_05921 PF01037 Lrp/AsnC ligand binding domain RA8CHR_05922 PF00456 Transketolase, thiamine diphosphate binding domain RA8CHR_05922 PF17831 Pyruvate dehydrogenase E1 component middle domain RA8CHR_05923 PF17932 Tetracyclin repressor-like, C-terminal domain RA8CHR_05923 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_05924 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA8CHR_05933 PF18146 Damage-inducible protein CinA KH domain RA8CHR_05933 PF00994 Probable molybdopterin binding domain RA8CHR_05933 PF02464 Competence-damaged protein RA8CHR_05936 PF03631 Virulence factor BrkB RA8CHR_05937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05937 PF03466 LysR substrate binding domain RA8CHR_05938 PF00106 short chain dehydrogenase RA8CHR_05939 PF00106 short chain dehydrogenase RA8CHR_05940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA8CHR_05943 PF05726 Pirin C-terminal cupin domain RA8CHR_05943 PF02678 Pirin RA8CHR_05945 PF01494 FAD binding domain RA8CHR_05947 PF00180 Isocitrate/isopropylmalate dehydrogenase RA8CHR_05948 PF00694 Aconitase C-terminal domain RA8CHR_05949 PF00330 Aconitase family (aconitate hydratase) RA8CHR_05950 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05951 PF03466 LysR substrate binding domain RA8CHR_05951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05952 PF03466 LysR substrate binding domain RA8CHR_05952 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05953 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05954 PF01494 FAD binding domain RA8CHR_05955 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_05957 PF01494 FAD binding domain RA8CHR_05959 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_05960 PF00072 Response regulator receiver domain RA8CHR_05960 PF01627 Hpt domain RA8CHR_05960 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05961 PF01739 CheR methyltransferase, SAM binding domain RA8CHR_05961 PF03705 CheR methyltransferase, all-alpha domain RA8CHR_05962 PF01339 CheB methylesterase RA8CHR_05963 PF00072 Response regulator receiver domain RA8CHR_05963 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_05964 PF00248 Aldo/keto reductase family RA8CHR_05966 PF00528 Binding-protein-dependent transport system inner membrane component RA8CHR_05968 PF00005 ABC transporter RA8CHR_05969 PF04679 ATP dependent DNA ligase C terminal region RA8CHR_05969 PF01068 ATP dependent DNA ligase domain RA8CHR_05971 PF13091 PLD-like domain RA8CHR_05971 PF13396 Phospholipase_D-nuclease N-terminal RA8CHR_05975 PF02424 ApbE family RA8CHR_05978 PF07969 Amidohydrolase family RA8CHR_05979 PF00005 ABC transporter RA8CHR_05980 PF00005 ABC transporter RA8CHR_05981 PF06007 Phosphonate metabolism protein PhnJ RA8CHR_05982 PF05861 Bacterial phosphonate metabolism protein (PhnI) RA8CHR_05984 PF06754 Phosphonate metabolism protein PhnG RA8CHR_05985 PF07702 UTRA domain RA8CHR_05985 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_05988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_05988 PF03466 LysR substrate binding domain RA8CHR_05989 PF00550 Phosphopantetheine attachment site RA8CHR_05989 PF08659 KR domain RA8CHR_05989 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_05989 PF14765 Polyketide synthase dehydratase RA8CHR_05989 PF00698 Acyl transferase domain RA8CHR_05991 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_05991 PF00989 PAS fold RA8CHR_05991 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_05993 PF00072 Response regulator receiver domain RA8CHR_05994 PF00072 Response regulator receiver domain RA8CHR_05994 PF00990 Diguanylate cyclase, GGDEF domain RA8CHR_06000 PF03631 Virulence factor BrkB RA8CHR_06002 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06003 PF02567 Phenazine biosynthesis-like protein RA8CHR_06005 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06006 PF13932 GidA associated domain RA8CHR_06006 PF01134 Glucose inhibited division protein A RA8CHR_06012 PF13609 Gram-negative porin RA8CHR_06013 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06014 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA8CHR_06014 PF07683 Cobalamin synthesis protein cobW C-terminal domain RA8CHR_06016 PF02538 Hydantoinase B/oxoprolinase RA8CHR_06017 PF05378 Hydantoinase/oxoprolinase N-terminal region RA8CHR_06017 PF01968 Hydantoinase/oxoprolinase RA8CHR_06018 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA8CHR_06019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06019 PF03466 LysR substrate binding domain RA8CHR_06022 PF00083 Sugar (and other) transporter RA8CHR_06022 PF07690 Major Facilitator Superfamily RA8CHR_06023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06023 PF03466 LysR substrate binding domain RA8CHR_06026 PF00092 von Willebrand factor type A domain RA8CHR_06027 PF08406 CbbQ/NirQ/NorQ C-terminal RA8CHR_06027 PF07728 AAA domain (dynein-related subfamily) RA8CHR_06028 PF00795 Carbon-nitrogen hydrolase RA8CHR_06029 PF00005 ABC transporter RA8CHR_06030 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_06030 PF00005 ABC transporter RA8CHR_06031 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_06032 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_06033 PF13458 Periplasmic binding protein RA8CHR_06034 PF00440 Bacterial regulatory proteins, tetR family RA8CHR_06034 PF16925 Tetracyclin repressor-like, C-terminal domain RA8CHR_06035 PF05199 GMC oxidoreductase RA8CHR_06035 PF00732 GMC oxidoreductase RA8CHR_06036 PF02515 CoA-transferase family III RA8CHR_06037 PF00378 Enoyl-CoA hydratase/isomerase RA8CHR_06038 PF00107 Zinc-binding dehydrogenase RA8CHR_06038 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_06039 PF01425 Amidase RA8CHR_06040 PF03466 LysR substrate binding domain RA8CHR_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06044 PF00211 Adenylate and Guanylate cyclase catalytic domain RA8CHR_06045 PF12833 Helix-turn-helix domain RA8CHR_06045 PF01965 DJ-1/PfpI family RA8CHR_06049 PF00668 Condensation domain RA8CHR_06049 PF00501 AMP-binding enzyme RA8CHR_06049 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_06049 PF00550 Phosphopantetheine attachment site RA8CHR_06051 PF03466 LysR substrate binding domain RA8CHR_06051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06052 PF00775 Dioxygenase RA8CHR_06052 PF04444 Catechol dioxygenase N terminus RA8CHR_06054 PF02515 CoA-transferase family III RA8CHR_06055 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06056 PF13458 Periplasmic binding protein RA8CHR_06057 PF02653 Branched-chain amino acid transport system / permease component RA8CHR_06058 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8CHR_06058 PF00005 ABC transporter RA8CHR_06059 PF00005 ABC transporter RA8CHR_06060 PF01717 Cobalamin-independent synthase, Catalytic domain RA8CHR_06060 PF08267 Cobalamin-independent synthase, N-terminal domain RA8CHR_06062 PF05067 Manganese containing catalase RA8CHR_06067 PF02535 ZIP Zinc transporter RA8CHR_06070 PF16124 RecQ zinc-binding RA8CHR_06070 PF09382 RQC domain RA8CHR_06070 PF00270 DEAD/DEAH box helicase RA8CHR_06070 PF00570 HRDC domain RA8CHR_06070 PF00271 Helicase conserved C-terminal domain RA8CHR_06074 PF06745 KaiC RA8CHR_06075 PF00672 HAMP domain RA8CHR_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8CHR_06075 PF18698 Histidine kinase sensor domain RA8CHR_06075 PF00512 His Kinase A (phospho-acceptor) domain RA8CHR_06075 PF00989 PAS fold RA8CHR_06077 PF05506 Domain of unknown function (DUF756) RA8CHR_06077 PF04185 Phosphoesterase family RA8CHR_06078 PF01925 Sulfite exporter TauE/SafE RA8CHR_06079 PF02515 CoA-transferase family III RA8CHR_06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06080 PF03466 LysR substrate binding domain RA8CHR_06081 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_06081 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_06081 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_06082 PF08240 Alcohol dehydrogenase GroES-like domain RA8CHR_06082 PF00107 Zinc-binding dehydrogenase RA8CHR_06083 PF02515 CoA-transferase family III RA8CHR_06084 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06085 PF09339 IclR helix-turn-helix domain RA8CHR_06085 PF01614 Bacterial transcriptional regulator RA8CHR_06086 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06087 PF03466 LysR substrate binding domain RA8CHR_06087 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06090 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06091 PF01022 Bacterial regulatory protein, arsR family RA8CHR_06092 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8CHR_06093 PF00873 AcrB/AcrD/AcrF family RA8CHR_06095 PF02321 Outer membrane efflux protein RA8CHR_06096 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8CHR_06100 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06101 PF07883 Cupin domain RA8CHR_06102 PF16347 Domain of unknown function (DUF4976) RA8CHR_06102 PF00884 Sulfatase RA8CHR_06103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06103 PF03466 LysR substrate binding domain RA8CHR_06105 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06108 PF02627 Carboxymuconolactone decarboxylase family RA8CHR_06110 PF13378 Enolase C-terminal domain-like RA8CHR_06110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8CHR_06112 PF00486 Transcriptional regulatory protein, C terminal RA8CHR_06114 PF00893 Small Multidrug Resistance protein RA8CHR_06122 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06123 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA8CHR_06123 PF02770 Acyl-CoA dehydrogenase, middle domain RA8CHR_06123 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA8CHR_06124 PF00501 AMP-binding enzyme RA8CHR_06124 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_06125 PF03466 LysR substrate binding domain RA8CHR_06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8CHR_06127 PF00293 NUDIX domain RA8CHR_06128 PF01970 Tripartite tricarboxylate transporter TctA family RA8CHR_06129 PF07331 Tripartite tricarboxylate transporter TctB family RA8CHR_06131 PF00891 O-methyltransferase domain RA8CHR_06132 PF02913 FAD linked oxidases, C-terminal domain RA8CHR_06132 PF13183 4Fe-4S dicluster domain RA8CHR_06132 PF01565 FAD binding domain RA8CHR_06133 PF00392 Bacterial regulatory proteins, gntR family RA8CHR_06133 PF07729 FCD domain RA8CHR_06134 PF00266 Aminotransferase class-V RA8CHR_06135 PF03401 Tripartite tricarboxylate transporter family receptor RA8CHR_06137 PF00668 Condensation domain RA8CHR_06137 PF00550 Phosphopantetheine attachment site RA8CHR_06137 PF13193 AMP-binding enzyme C-terminal domain RA8CHR_06137 PF00501 AMP-binding enzyme RA8CHR_06138 PF02245 Methylpurine-DNA glycosylase (MPG) RA8CHR_06145 PF18766 SWI2/SNF2 ATPase RA8CHR_06145 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RA8CHR_06145 PF11867 Domain of unknown function (DUF3387) RA8CHR_06146 PF12161 HsdM N-terminal domain RA8CHR_06146 PF02384 N-6 DNA Methylase RA8CHR_06149 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RA8CHR_06149 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RA8CHR_06150 PF02780 Transketolase, C-terminal domain RA8CHR_06150 PF00456 Transketolase, thiamine diphosphate binding domain RA8CHR_06150 PF02779 Transketolase, pyrimidine binding domain RA8CHR_06151 PF02675 S-adenosylmethionine decarboxylase RA8CHR_06152 PF00483 Nucleotidyl transferase RA8CHR_06153 PF00150 Cellulase (glycosyl hydrolase family 5) RA8CHR_06156 PF00557 Metallopeptidase family M24 RA8CHR_06156 PF05195 Aminopeptidase P, N-terminal domain RA8CHR_06164 PF03949 Malic enzyme, NAD binding domain RA8CHR_06164 PF00390 Malic enzyme, N-terminal domain RA8CHR_06164 PF01515 Phosphate acetyl/butaryl transferase RA8CHR_06165 PF00545 ribonuclease RA8CHR_06168 PF00398 Ribosomal RNA adenine dimethylase RA8CHR_06169 PF00639 PPIC-type PPIASE domain RA8CHR_06169 PF09312 SurA N-terminal domain RA8CHR_06170 PF04453 LPS transport system D RA8CHR_06171 PF01636 Phosphotransferase enzyme family RA8CHR_06172 PF04452 RNA methyltransferase RA8CHR_06175 PF07690 Major Facilitator Superfamily RA8CHR_06176 PF12146 Serine aminopeptidase, S33 RA8CHR_06180 PF00520 Ion transport protein RA8CHR_06180 PF00027 Cyclic nucleotide-binding domain RA8CHR_06181 PF01205 Uncharacterized protein family UPF0029 RA8CHR_06181 PF09186 Domain of unknown function (DUF1949) RA8CHR_06182 PF07021 Methionine biosynthesis protein MetW RA8CHR_06182 PF00561 alpha/beta hydrolase fold RA8CHR_06183 PF00561 alpha/beta hydrolase fold RA8CHR_06184 PF01169 Uncharacterized protein family UPF0016 RA8CHR_06185 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RA8CHR_06186 PF00106 short chain dehydrogenase RA8CHR_06189 PF00571 CBS domain RA8CHR_06189 PF01380 SIS domain RA8CHR_06190 PF00999 Sodium/hydrogen exchanger family RA8CHR_06190 PF02254 TrkA-N domain RA8CHR_06190 PF02080 TrkA-C domain RA8CHR_06193 PF01926 50S ribosome-binding GTPase RA8CHR_06193 PF12631 MnmE helical domain RA8CHR_06193 PF10396 GTP-binding protein TrmE N-terminus RA8CHR_06194 PF14849 YidC periplasmic domain RA8CHR_06194 PF02096 60Kd inner membrane protein RA8CHR_06195 PF01809 Putative membrane protein insertion efficiency factor RA8CHR_06196 PF00825 Ribonuclease P RA8CHR_06197 PF00468 Ribosomal protein L34 RA8P1_00001 PF13614 AAA domain RA8P1_00001 PF00376 MerR family regulatory protein RA8P1_00007 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00008 PF01817 Chorismate mutase type II RA8P1_00013 PF13683 Integrase core domain RA8P1_00013 PF13276 HTH-like domain RA8P1_00014 PF01527 Transposase RA8P1_00019 PF01687 Riboflavin kinase RA8P1_00019 PF06574 FAD synthetase RA8P1_00021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00021 PF03466 LysR substrate binding domain RA8P1_00022 PF01613 Flavin reductase like domain RA8P1_00023 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal RA8P1_00023 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal RA8P1_00024 PF00881 Nitroreductase family RA8P1_00025 PF00465 Iron-containing alcohol dehydrogenase RA8P1_00026 PF04444 Catechol dioxygenase N terminus RA8P1_00026 PF00775 Dioxygenase RA8P1_00027 PF07690 Major Facilitator Superfamily RA8P1_00029 PF01694 Rhomboid family RA8P1_00030 PF08281 Sigma-70, region 4 RA8P1_00030 PF04542 Sigma-70 region 2 RA8P1_00030 PF12680 SnoaL-like domain RA8P1_00031 PF02627 Carboxymuconolactone decarboxylase family RA8P1_00032 PF13817 IS66 C-terminal element RA8P1_00032 PF13007 Transposase C of IS166 homeodomain RA8P1_00032 PF13005 zinc-finger binding domain of transposase IS66 RA8P1_00032 PF03050 Transposase IS66 family RA8P1_00034 PF12705 PD-(D/E)XK nuclease superfamily RA8P1_00034 PF00580 UvrD/REP helicase N-terminal domain RA8P1_00034 PF13361 UvrD-like helicase C-terminal domain RA8P1_00036 PF01609 Transposase DDE domain RA8P1_00036 PF05598 Transposase domain (DUF772) RA8P1_00037 PF00355 Rieske [2Fe-2S] domain RA8P1_00039 PF02515 CoA-transferase family III RA8P1_00040 PF03328 HpcH/HpaI aldolase/citrate lyase family RA8P1_00041 PF03466 LysR substrate binding domain RA8P1_00041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00042 PF03466 LysR substrate binding domain RA8P1_00042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00043 PF00355 Rieske [2Fe-2S] domain RA8P1_00044 PF00355 Rieske [2Fe-2S] domain RA8P1_00045 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00046 PF00355 Rieske [2Fe-2S] domain RA8P1_00048 PF00970 Oxidoreductase FAD-binding domain RA8P1_00048 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8P1_00049 PF00355 Rieske [2Fe-2S] domain RA8P1_00050 PF00753 Metallo-beta-lactamase superfamily RA8P1_00051 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00053 PF02627 Carboxymuconolactone decarboxylase family RA8P1_00054 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA8P1_00054 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8P1_00056 PF01614 Bacterial transcriptional regulator RA8P1_00056 PF09339 IclR helix-turn-helix domain RA8P1_00057 PF00884 Sulfatase RA8P1_00057 PF16347 Domain of unknown function (DUF4976) RA8P1_00058 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00061 PF01734 Patatin-like phospholipase RA8P1_00062 PF01734 Patatin-like phospholipase RA8P1_00064 PF00067 Cytochrome P450 RA8P1_00072 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00073 PF01738 Dienelactone hydrolase family RA8P1_00074 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00075 PF00698 Acyl transferase domain RA8P1_00075 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8P1_00075 PF00550 Phosphopantetheine attachment site RA8P1_00075 PF14765 Polyketide synthase dehydratase RA8P1_00075 PF08240 Alcohol dehydrogenase GroES-like domain RA8P1_00075 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8P1_00075 PF08659 KR domain RA8P1_00075 PF00107 Zinc-binding dehydrogenase RA8P1_00075 PF16197 Ketoacyl-synthetase C-terminal extension RA8P1_00076 PF00561 alpha/beta hydrolase fold RA8P1_00086 PF09339 IclR helix-turn-helix domain RA8P1_00086 PF01614 Bacterial transcriptional regulator RA8P1_00088 PF00701 Dihydrodipicolinate synthetase family RA8P1_00091 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RA8P1_00100 PF13458 Periplasmic binding protein RA8P1_00103 PF00378 Enoyl-CoA hydratase/isomerase RA8P1_00106 PF00501 AMP-binding enzyme RA8P1_00106 PF14535 AMP-binding enzyme C-terminal domain RA8P1_00108 PF00970 Oxidoreductase FAD-binding domain RA8P1_00108 PF00175 Oxidoreductase NAD-binding domain RA8P1_00108 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8P1_00111 PF00005 ABC transporter RA8P1_00111 PF12399 Branched-chain amino acid ATP-binding cassette transporter RA8P1_00112 PF00005 ABC transporter RA8P1_00113 PF01565 FAD binding domain RA8P1_00113 PF02913 FAD linked oxidases, C-terminal domain RA8P1_00114 PF01037 Lrp/AsnC ligand binding domain RA8P1_00120 PF02601 Exonuclease VII, large subunit RA8P1_00120 PF13742 OB-fold nucleic acid binding domain RA8P1_00125 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00127 PF03466 LysR substrate binding domain RA8P1_00128 PF00356 Bacterial regulatory proteins, lacI family RA8P1_00129 PF01968 Hydantoinase/oxoprolinase RA8P1_00129 PF05378 Hydantoinase/oxoprolinase N-terminal region RA8P1_00131 PF02515 CoA-transferase family III RA8P1_00132 PF00378 Enoyl-CoA hydratase/isomerase RA8P1_00133 PF00682 HMGL-like RA8P1_00134 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00136 PF00701 Dihydrodipicolinate synthetase family RA8P1_00137 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00138 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00139 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8P1_00139 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA8P1_00139 PF01842 ACT domain RA8P1_00151 PF09828 Chromate resistance exported protein RA8P1_00153 PF02417 Chromate transporter RA8P1_00154 PF02417 Chromate transporter RA8P1_00155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8P1_00156 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8P1_00160 PF13700 Domain of unknown function (DUF4158) RA8P1_00160 PF01526 Tn3 transposase DDE domain RA8P1_00162 PF01738 Dienelactone hydrolase family RA8P1_00163 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA8P1_00163 PF13378 Enolase C-terminal domain-like RA8P1_00164 PF00465 Iron-containing alcohol dehydrogenase RA8P1_00167 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00168 PF13610 DDE domain RA8P1_00169 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RA8P1_00169 PF00355 Rieske [2Fe-2S] domain RA8P1_00170 PF04444 Catechol dioxygenase N terminus RA8P1_00170 PF00775 Dioxygenase RA8P1_00171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00171 PF03466 LysR substrate binding domain RA8P1_00175 PF01527 Transposase RA8P1_00177 PF13276 HTH-like domain RA8P1_00177 PF00665 Integrase core domain RA8P1_00177 PF13333 Integrase core domain RA8P1_00182 PF13361 UvrD-like helicase C-terminal domain RA8P1_00182 PF00580 UvrD/REP helicase N-terminal domain RA8P1_00188 PF02601 Exonuclease VII, large subunit RA8P1_00188 PF13742 OB-fold nucleic acid binding domain RA8P1_00191 PF01526 Tn3 transposase DDE domain RA8P1_00191 PF13700 Domain of unknown function (DUF4158) RA8P1_00202 PF12728 Helix-turn-helix domain RA8P1_00202 PF02661 Fic/DOC family RA8P1_00203 PF14579 Helix-hairpin-helix motif RA8P1_00203 PF07733 Bacterial DNA polymerase III alpha NTPase domain RA8P1_00203 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RA8P1_00203 PF02811 PHP domain RA8P1_00212 PF04679 ATP dependent DNA ligase C terminal region RA8P1_00212 PF01068 ATP dependent DNA ligase domain RA8P1_00212 PF13298 DNA polymerase Ligase (LigD) RA8P1_00213 PF04679 ATP dependent DNA ligase C terminal region RA8P1_00213 PF13298 DNA polymerase Ligase (LigD) RA8P1_00213 PF01068 ATP dependent DNA ligase domain RA8P1_00214 PF09278 MerR, DNA binding RA8P1_00214 PF00376 MerR family regulatory protein RA8P1_00217 PF00529 HlyD membrane-fusion protein of T1SS RA8P1_00217 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8P1_00218 PF00873 AcrB/AcrD/AcrF family RA8P1_00222 PF08220 DeoR-like helix-turn-helix domain RA8P1_00222 PF00455 DeoR C terminal sensor domain RA8P1_00223 PF01252 Signal peptidase (SPase) II RA8P1_00225 PF00403 Heavy-metal-associated domain RA8P1_00226 PF13411 MerR HTH family regulatory protein RA8P1_00227 PF03239 Iron permease FTR1 family RA8P1_00228 PF13700 Domain of unknown function (DUF4158) RA8P1_00228 PF01526 Tn3 transposase DDE domain RA8P1_00231 PF16177 Acetyl-coenzyme A synthetase N-terminus RA8P1_00231 PF13193 AMP-binding enzyme C-terminal domain RA8P1_00231 PF00501 AMP-binding enzyme RA8P1_00232 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00232 PF03466 LysR substrate binding domain RA8P1_00234 PF02082 Transcriptional regulator RA8P1_00235 PF13700 Domain of unknown function (DUF4158) RA8P1_00235 PF01526 Tn3 transposase DDE domain RA8P1_00236 PF13361 UvrD-like helicase C-terminal domain RA8P1_00236 PF00580 UvrD/REP helicase N-terminal domain RA8P1_00237 PF11398 Protein of unknown function (DUF2813) RA8P1_00246 PF04221 RelB antitoxin RA8P1_00249 PF13005 zinc-finger binding domain of transposase IS66 RA8P1_00249 PF13817 IS66 C-terminal element RA8P1_00249 PF13007 Transposase C of IS166 homeodomain RA8P1_00249 PF03050 Transposase IS66 family RA8P1_00251 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RA8P1_00252 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RA8P1_00253 PF01261 Xylose isomerase-like TIM barrel RA8P1_00254 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00255 PF03466 LysR substrate binding domain RA8P1_00256 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA8P1_00256 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA8P1_00257 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00259 PF01261 Xylose isomerase-like TIM barrel RA8P1_00261 PF08240 Alcohol dehydrogenase GroES-like domain RA8P1_00261 PF16197 Ketoacyl-synthetase C-terminal extension RA8P1_00261 PF00698 Acyl transferase domain RA8P1_00261 PF14765 Polyketide synthase dehydratase RA8P1_00261 PF00550 Phosphopantetheine attachment site RA8P1_00261 PF08659 KR domain RA8P1_00261 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8P1_00261 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8P1_00263 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00264 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00265 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00266 PF00005 ABC transporter RA8P1_00269 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA8P1_00270 PF00596 Class II Aldolase and Adducin N-terminal domain RA8P1_00272 PF03358 NADPH-dependent FMN reductase RA8P1_00272 PF00890 FAD binding domain RA8P1_00272 PF04205 FMN-binding domain RA8P1_00273 PF03466 LysR substrate binding domain RA8P1_00273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00274 PF01425 Amidase RA8P1_00276 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00277 PF00155 Aminotransferase class I and II RA8P1_00278 PF03466 LysR substrate binding domain RA8P1_00278 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P1_00280 PF05378 Hydantoinase/oxoprolinase N-terminal region RA8P1_00280 PF01968 Hydantoinase/oxoprolinase RA8P1_00282 PF01425 Amidase RA8P1_00288 PF07690 Major Facilitator Superfamily RA8P1_00289 PF00970 Oxidoreductase FAD-binding domain RA8P1_00289 PF00175 Oxidoreductase NAD-binding domain RA8P1_00289 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RA8P1_00290 PF01180 Dihydroorotate dehydrogenase RA8P1_00291 PF01546 Peptidase family M20/M25/M40 RA8P1_00291 PF07687 Peptidase dimerisation domain RA8P1_00292 PF01979 Amidohydrolase family RA8P1_00294 PF00156 Phosphoribosyl transferase domain RA8P1_00296 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00297 PF00175 Oxidoreductase NAD-binding domain RA8P1_00297 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8P1_00298 PF01568 Molydopterin dinucleotide binding domain RA8P1_00298 PF18364 Molybdopterin oxidoreductase N-terminal domain RA8P1_00298 PF00384 Molybdopterin oxidoreductase RA8P1_00299 PF01568 Molydopterin dinucleotide binding domain RA8P1_00299 PF00384 Molybdopterin oxidoreductase RA8P1_00307 PF01569 PAP2 superfamily RA8P1_00308 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RA8P1_00309 PF00892 EamA-like transporter family RA8P1_00311 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA8P1_00312 PF00535 Glycosyl transferase family 2 RA8P1_00313 PF02911 Formyl transferase, C-terminal domain RA8P1_00313 PF00551 Formyl transferase RA8P1_00313 PF01370 NAD dependent epimerase/dehydratase family RA8P1_00314 PF01370 NAD dependent epimerase/dehydratase family RA8P1_00314 PF02911 Formyl transferase, C-terminal domain RA8P1_00314 PF00551 Formyl transferase RA8P1_00315 PF01522 Polysaccharide deacetylase RA8P1_00317 PF08019 Phosphoethanolamine transferase EptA/EptB RA8P1_00317 PF00884 Sulfatase RA8P1_00319 PF00072 Response regulator receiver domain RA8P1_00319 PF00486 Transcriptional regulatory protein, C terminal RA8P1_00331 PF01979 Amidohydrolase family RA8P1_00332 PF05378 Hydantoinase/oxoprolinase N-terminal region RA8P1_00332 PF01968 Hydantoinase/oxoprolinase RA8P1_00333 PF02538 Hydantoinase B/oxoprolinase RA8P1_00334 PF01546 Peptidase family M20/M25/M40 RA8P1_00334 PF07687 Peptidase dimerisation domain RA8P1_00335 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00337 PF02195 ParB-like nuclease domain RA8P1_00337 PF17762 HTH domain found in ParB protein RA8P1_00338 PF13614 AAA domain RA8P1_00342 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RA8P1_00343 PF07996 Type IV secretion system proteins RA8P1_00346 PF01527 Transposase RA8P1_00347 PF13683 Integrase core domain RA8P1_00347 PF13276 HTH-like domain RA8P1_00351 PF03524 Conjugal transfer protein RA8P1_00352 PF03743 Bacterial conjugation TrbI-like protein RA8P1_00353 PF00437 Type II/IV secretion system protein RA8P1_00354 PF00437 Type II/IV secretion system protein RA8P1_00355 PF02534 Type IV secretory system Conjugative DNA transfer RA8P1_00361 PF18818 Metallopeptidase superfamily domain RA8P1_00361 PF08401 Domain of unknown function (DUF1738) RA8P1_00364 PF01471 Putative peptidoglycan binding domain RA8P1_00364 PF03572 Peptidase family S41 RA8P1_00364 PF17820 PDZ domain RA8P1_00366 PF01979 Amidohydrolase family RA8P1_00367 PF03167 Uracil DNA glycosylase superfamily RA8P1_00369 PF01134 Glucose inhibited division protein A RA8P1_00369 PF13932 GidA associated domain RA8P1_00376 PF04715 Anthranilate synthase component I, N terminal region RA8P1_00376 PF00117 Glutamine amidotransferase class-I RA8P1_00376 PF00425 chorismate binding enzyme RA8P1_00381 PF00005 ABC transporter RA8P1_00382 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00383 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00384 PF04199 Putative cyclase RA8P1_00387 PF06719 AraC-type transcriptional regulator N-terminus RA8P1_00387 PF12833 Helix-turn-helix domain RA8P1_00388 PF06719 AraC-type transcriptional regulator N-terminus RA8P1_00388 PF12833 Helix-turn-helix domain RA8P1_00392 PF02661 Fic/DOC family RA8P1_00392 PF12728 Helix-turn-helix domain RA8P1_00394 PF07702 UTRA domain RA8P1_00394 PF00392 Bacterial regulatory proteins, gntR family RA8P1_00395 PF03401 Tripartite tricarboxylate transporter family receptor RA8P1_00396 PF01613 Flavin reductase like domain RA8P1_00397 PF00925 GTP cyclohydrolase II RA8P1_00397 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RA8P1_00398 PF00694 Aconitase C-terminal domain RA8P1_00399 PF00330 Aconitase family (aconitate hydratase) RA8P1_00403 PF00296 Luciferase-like monooxygenase RA8P1_00404 PF00083 Sugar (and other) transporter RA8P1_00405 PF13683 Integrase core domain RA8P1_00405 PF13276 HTH-like domain RA8P1_00406 PF01527 Transposase RA8P1_00418 PF01037 Lrp/AsnC ligand binding domain RA8P1_00422 PF00005 ABC transporter RA8P1_00424 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00425 PF00528 Binding-protein-dependent transport system inner membrane component RA8P1_00426 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8P1_00429 PF00765 Autoinducer synthase RA8P1_00430 PF03472 Autoinducer binding domain RA8P1_00430 PF00196 Bacterial regulatory proteins, luxR family RA8P2_00001 PF13614 AAA domain RA8P2_00010 PF00437 Type II/IV secretion system protein RA8P2_00013 PF18415 Histidine kinase receptor ArcB trans-membrane domain RA8P2_00013 PF00072 Response regulator receiver domain RA8P2_00013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8P2_00013 PF01627 Hpt domain RA8P2_00013 PF00989 PAS fold RA8P2_00013 PF00512 His Kinase A (phospho-acceptor) domain RA8P2_00032 PF01131 DNA topoisomerase RA8P2_00032 PF01751 Toprim domain RA8P2_00047 PF08278 DNA primase DnaG DnaB-binding RA8P2_00047 PF10410 DnaB-helicase binding domain of primase RA8P2_00047 PF13662 Toprim domain RA8P2_00047 PF08275 DNA primase catalytic core, N-terminal domain RA8P2_00047 PF01807 CHC2 zinc finger RA8P2_00050 PF00216 Bacterial DNA-binding protein RA8P2_00106 PF01170 Putative RNA methylase family UPF0020 RA8P2_00106 PF02926 THUMP domain RA8P2_00110 PF13742 OB-fold nucleic acid binding domain RA8P2_00110 PF02601 Exonuclease VII, large subunit RA8P2_00111 PF02601 Exonuclease VII, large subunit RA8P2_00111 PF13742 OB-fold nucleic acid binding domain RA8P2_00114 PF00072 Response regulator receiver domain RA8P2_00114 PF00196 Bacterial regulatory proteins, luxR family RA8P2_00115 PF01555 DNA methylase RA8P2_00143 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA8P2_00143 PF00529 HlyD membrane-fusion protein of T1SS RA8P2_00144 PF00873 AcrB/AcrD/AcrF family RA8P2_00147 PF04945 YHS domain RA8P2_00152 PF13411 MerR HTH family regulatory protein RA8P2_00158 PF00403 Heavy-metal-associated domain RA8P2_00159 PF09278 MerR, DNA binding RA8P2_00159 PF00376 MerR family regulatory protein RA8P2_00160 PF07732 Multicopper oxidase RA8P2_00160 PF07731 Multicopper oxidase RA8P2_00160 PF00394 Multicopper oxidase RA8P2_00161 PF00486 Transcriptional regulatory protein, C terminal RA8P2_00161 PF00072 Response regulator receiver domain RA8P2_00162 PF00512 His Kinase A (phospho-acceptor) domain RA8P2_00162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8P2_00162 PF00672 HAMP domain RA8P2_00164 PF00034 Cytochrome c RA8P2_00165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA8P2_00165 PF03466 LysR substrate binding domain RA8P2_00167 PF01053 Cys/Met metabolism PLP-dependent enzyme RA8P2_00168 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA8P2_00169 PF00528 Binding-protein-dependent transport system inner membrane component RA8P2_00170 PF00528 Binding-protein-dependent transport system inner membrane component RA8P2_00171 PF00005 ABC transporter RA8P2_00176 PF00723 Glycosyl hydrolases family 15 RA8P2_00178 PF05275 Copper resistance protein B precursor (CopB) RA8P2_00179 PF07731 Multicopper oxidase RA8P2_00179 PF00394 Multicopper oxidase RA8P2_00179 PF07732 Multicopper oxidase RA8P2_00181 PF08240 Alcohol dehydrogenase GroES-like domain RA8P2_00181 PF00107 Zinc-binding dehydrogenase RA8P2_00182 PF00171 Aldehyde dehydrogenase family RA8P2_00188 PF00970 Oxidoreductase FAD-binding domain RA8P2_00188 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8P2_00188 PF00175 Oxidoreductase NAD-binding domain RA8P2_00193 PF13091 PLD-like domain RA8P2_00196 PF00403 Heavy-metal-associated domain RA8P2_00197 PF06100 MCRA family RA8P2_00199 PF14572 Phosphoribosyl synthetase-associated domain RA8P2_00199 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RA8P2_00200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RA8P2_00200 PF02885 Glycosyl transferase family, helical bundle domain RA8P2_00200 PF00591 Glycosyl transferase family, a/b domain RA8P2_00201 PF00753 Metallo-beta-lactamase superfamily RA8P2_00201 PF10996 Beta-Casp domain RA8P2_00201 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RA8P2_00205 PF11339 Protein of unknown function (DUF3141) RA8P2_00206 PF03976 Polyphosphate kinase 2 (PPK2) RA8P2_00207 PF00403 Heavy-metal-associated domain RA8P2_00216 PF07732 Multicopper oxidase RA8P2_00216 PF07731 Multicopper oxidase RA8P2_00220 PF03050 Transposase IS66 family RA8P2_00220 PF13817 IS66 C-terminal element RA8P2_00220 PF13007 Transposase C of IS166 homeodomain RA8P2_00220 PF13005 zinc-finger binding domain of transposase IS66 RA8P2_00224 PF00550 Phosphopantetheine attachment site RA8P2_00224 PF00975 Thioesterase domain RA8P2_00224 PF00668 Condensation domain RA8P2_00224 PF00501 AMP-binding enzyme RA8P2_00224 PF13193 AMP-binding enzyme C-terminal domain RA8P2_00225 PF00550 Phosphopantetheine attachment site RA8P2_00225 PF08659 KR domain RA8P2_00225 PF02801 Beta-ketoacyl synthase, C-terminal domain RA8P2_00225 PF13193 AMP-binding enzyme C-terminal domain RA8P2_00225 PF00501 AMP-binding enzyme RA8P2_00225 PF00668 Condensation domain RA8P2_00225 PF16197 Ketoacyl-synthetase C-terminal extension RA8P2_00225 PF00109 Beta-ketoacyl synthase, N-terminal domain RA8P2_00225 PF14765 Polyketide synthase dehydratase RA8P2_00232 PF00873 AcrB/AcrD/AcrF family RA8P2_00234 PF00892 EamA-like transporter family RA8P2_00236 PF00004 ATPase family associated with various cellular activities (AAA) RA8P2_00249 PF03960 ArsC family RA8P2_00251 PF17991 Thioredoxin like C-terminal domain RA8P2_00251 PF02683 Cytochrome C biogenesis protein transmembrane region RA8P2_00251 PF00578 AhpC/TSA family RA8P2_00253 PF00510 Cytochrome c oxidase subunit III RA8P2_00254 PF02630 SCO1/SenC RA8P2_00256 PF00510 Cytochrome c oxidase subunit III RA8P2_00258 PF03243 Alkylmercury lyase RA8P2_00258 PF12324 Helix-turn-helix domain of alkylmercury lyase RA8P2_00259 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA8P2_00259 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA8P2_00259 PF00403 Heavy-metal-associated domain RA8P2_00260 PF03203 MerC mercury resistance protein RA8P2_00261 PF00403 Heavy-metal-associated domain RA8P2_00262 PF02411 MerT mercuric transport protein RA8P2_00263 PF09278 MerR, DNA binding RA8P2_00263 PF00376 MerR family regulatory protein RA8P2_00264 PF01545 Cation efflux family RA8P2_00270 PF09828 Chromate resistance exported protein RA8P2_00271 PF02417 Chromate transporter RA8P2_00272 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA8P2_00274 PF13700 Domain of unknown function (DUF4158) RA8P2_00274 PF01526 Tn3 transposase DDE domain RA8P2_00288 PF00999 Sodium/hydrogen exchanger family RA8P2_00288 PF02254 TrkA-N domain RA8P2_00289 PF00999 Sodium/hydrogen exchanger family RA8P2_00289 PF02254 TrkA-N domain RA8P2_00292 PF04343 Protein of unknown function, DUF488 RA8P2_00293 PF00478 IMP dehydrogenase / GMP reductase domain RA8P2_00293 PF00571 CBS domain RA8P2_00294 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8P2_00295 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA8P2_00296 PF00512 His Kinase A (phospho-acceptor) domain RA8P2_00296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8P2_00297 PF02954 Bacterial regulatory protein, Fis family RA8P2_00297 PF00072 Response regulator receiver domain RA8P2_00297 PF00158 Sigma-54 interaction domain RA8P2_00299 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA8P2_00299 PF00384 Molybdopterin oxidoreductase RA8P2_00299 PF01568 Molydopterin dinucleotide binding domain RA8P2_00300 PF13247 4Fe-4S dicluster domain RA8P2_00307 PF00970 Oxidoreductase FAD-binding domain RA8P2_00307 PF00111 2Fe-2S iron-sulfur cluster binding domain RA8P2_00307 PF00175 Oxidoreductase NAD-binding domain RA8P2_00308 PF04542 Sigma-70 region 2 RA8P2_00308 PF08281 Sigma-70, region 4 RA8P2_00310 PF00034 Cytochrome c RA8P2_00311 PF03167 Uracil DNA glycosylase superfamily RA8P2_00312 PF00923 Transaldolase/Fructose-6-phosphate aldolase RA8P2_00313 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RA8P2_00313 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RA8P2_00313 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RA8P2_00313 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RA8P2_00314 PF00456 Transketolase, thiamine diphosphate binding domain RA8P2_00314 PF02780 Transketolase, C-terminal domain RA8P2_00314 PF02779 Transketolase, pyrimidine binding domain RA8P2_00317 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA8P2_00317 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RA8P2_00318 PF00689 Cation transporting ATPase, C-terminus RA8P2_00318 PF00690 Cation transporter/ATPase, N-terminus RA8P2_00320 PF13700 Domain of unknown function (DUF4158) RA8P2_00320 PF01526 Tn3 transposase DDE domain RA8P2_00321 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ RA8P2_00322 PF04221 RelB antitoxin RA8P2_00323 PF03230 Antirestriction protein RA8P2_00325 PF13700 Domain of unknown function (DUF4158) RA8P2_00325 PF01526 Tn3 transposase DDE domain RA8P2_00328 PF00521 DNA gyrase/topoisomerase IV, subunit A RA8P2_00328 PF03989 DNA gyrase C-terminal domain, beta-propeller RA8P2_00329 PF01751 Toprim domain RA8P2_00329 PF00204 DNA gyrase B RA8P2_00329 PF00986 DNA gyrase B subunit, carboxyl terminus RA8P2_00329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA8P2_00335 PF04055 Radical SAM superfamily RA8P2_00340 PF02223 Thymidylate kinase RA8P2_00365 PF00149 Calcineurin-like phosphoesterase RA8P2_00370 PF00072 Response regulator receiver domain RA8P2_00370 PF00196 Bacterial regulatory proteins, luxR family RA8P2_00373 PF00114 Pilin (bacterial filament) RA8P2_00373 PF07963 Prokaryotic N-terminal methylation motif RA8P2_00414 PF00772 DnaB-like helicase N terminal domain RA8P2_00414 PF03796 DnaB-like helicase C terminal domain RA8P2_00419 PF01541 GIY-YIG catalytic domain RA8P2_00428 PF00270 DEAD/DEAH box helicase RA8P2_00428 PF17191 RecG wedge domain RA8P2_00428 PF00271 Helicase conserved C-terminal domain RA8P2_00431 PF04381 Putative exonuclease, RdgC RA8P2_00435 PF02371 Transposase IS116/IS110/IS902 family RA8P2_00435 PF01548 Transposase RA8P2_00440 PF17876 Cold shock domain RA8P2_00440 PF08461 Ribonuclease R winged-helix domain RA8P2_00440 PF08206 Ribonuclease B OB domain RA8P2_00440 PF00773 RNB domain RA8P2_00440 PF00575 S1 RNA binding domain RA8P3_00001 PF13614 AAA domain RA8P3_00002 PF02195 ParB-like nuclease domain RA8P3_00002 PF06613 KorB C-terminal beta-barrel domain RA8P3_00002 PF08535 KorB domain RA8P3_00004 PF18495 Antitoxin VbhA RA8P3_00005 PF17841 BID domain of Bartonella effector protein (Bep) RA8P3_00005 PF02661 Fic/DOC family RA8P3_00008 PF11657 Transcriptional activator TraM RA8P3_00010 PF17273 Family of unknown function (DUF5338) RA8P3_00013 PF18821 Large polyvalent protein-associated domain 7 RA8P3_00013 PF03432 Relaxase/Mobilisation nuclease domain RA8P3_00014 PF02534 Type IV secretory system Conjugative DNA transfer RA8P3_00015 PF10502 Signal peptidase, peptidase S26 RA8P3_00016 PF01751 Toprim domain RA8P3_00016 PF01131 DNA topoisomerase RA8P3_00018 PF08401 Domain of unknown function (DUF1738) RA8P3_00018 PF18818 Metallopeptidase superfamily domain RA8P3_00018 PF13362 Toprim domain RA8P3_00019 PF00239 Resolvase, N terminal domain RA8P3_00019 PF02796 Helix-turn-helix domain of resolvase RA8P3_00020 PF00005 ABC transporter RA8P3_00021 PF00239 Resolvase, N terminal domain RA8P3_00021 PF02796 Helix-turn-helix domain of resolvase RA8P3_00023 PF00565 Staphylococcal nuclease homologue RA8P3_00032 PF03743 Bacterial conjugation TrbI-like protein RA8P3_00034 PF03524 Conjugal transfer protein RA8P3_00035 PF04335 VirB8 protein RA8P3_00036 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RA8P3_00037 PF05101 Type IV secretory pathway, VirB3-like protein RA8P3_00038 PF04956 TrbC/VIRB2 family RA8P3_00039 PF00437 Type II/IV secretion system protein RA8P3_00040 PF16509 TrfB plasmid transcriptional repressor RA8P3_00041 PF07042 TrfA protein RA8P3_00044 PF13700 Domain of unknown function (DUF4158) RA8P3_00044 PF01526 Tn3 transposase DDE domain RA8P3_00045 PF04986 Putative transposase RA8P3_00045 PF14319 Transposase zinc-binding domain RA8P3_00046 PF01425 Amidase RA8P3_00047 PF00196 Bacterial regulatory proteins, luxR family RA8P3_00047 PF00072 Response regulator receiver domain RA8P3_00048 PF14319 Transposase zinc-binding domain RA8P3_00048 PF04986 Putative transposase RA8P3_00049 PF13700 Domain of unknown function (DUF4158) RA8P3_00049 PF01526 Tn3 transposase DDE domain RA8P3_00051 PF13700 Domain of unknown function (DUF4158) RA8P3_00051 PF01526 Tn3 transposase DDE domain RA8P3_00052 PF13700 Domain of unknown function (DUF4158) RA8P3_00052 PF01526 Tn3 transposase DDE domain RA8P3_00053 PF00239 Resolvase, N terminal domain RA8P3_00053 PF02796 Helix-turn-helix domain of resolvase RA8P3_00054 PF13495 Phage integrase, N-terminal SAM-like domain RA8P3_00054 PF00589 Phage integrase family RA8P3_00055 PF01695 IstB-like ATP binding protein RA8P3_00056 PF01526 Tn3 transposase DDE domain RA8P3_00056 PF13700 Domain of unknown function (DUF4158) RA8P3_00058 PF03230 Antirestriction protein RA8P3_00061 PF17383 Uncharacterized KorC regulated protein A RA8P3_00062 PF17394 Uncharacterized KleE stable inheritance protein RA8P3_00063 PF10959 Protein of unknown function (DUF2761)