locus-tag class description GJQ55_00005 PF00308 Bacterial dnaA protein GJQ55_00005 PF08299 Bacterial dnaA protein helix-turn-helix GJQ55_00005 PF11638 DnaA N-terminal domain GJQ55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain GJQ55_00010 PF02767 DNA polymerase III beta subunit, central domain GJQ55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain GJQ55_00015 PF02463 RecF/RecN/SMC N terminal domain GJQ55_00020 PF00204 DNA gyrase B GJQ55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus GJQ55_00020 PF18053 DNA gyrase B subunit insert domain GJQ55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_00020 PF01751 Toprim domain GJQ55_00040 PF05746 DALR anticodon binding domain GJQ55_00040 PF02092 Glycyl-tRNA synthetase beta subunit GJQ55_00045 PF02091 Glycyl-tRNA synthetase alpha subunit GJQ55_00050 PF02028 BCCT, betaine/carnitine/choline family transporter GJQ55_00060 PF00072 Response regulator receiver domain GJQ55_00065 PF03279 Bacterial lipid A biosynthesis acyltransferase GJQ55_00070 PF03471 Transporter associated domain GJQ55_00070 PF00999 Sodium/hydrogen exchanger family GJQ55_00070 PF02080 TrkA-C domain GJQ55_00075 PF00582 Universal stress protein family GJQ55_00080 PF01740 STAS domain GJQ55_00080 PF00916 Sulfate permease family GJQ55_00085 PF02386 Cation transport protein GJQ55_00090 PF02254 TrkA-N domain GJQ55_00090 PF02080 TrkA-C domain GJQ55_00095 PF01189 16S rRNA methyltransferase RsmB/F GJQ55_00095 PF01029 NusB family GJQ55_00100 PF02911 Formyl transferase, C-terminal domain GJQ55_00100 PF00551 Formyl transferase GJQ55_00105 PF01327 Polypeptide deformylase GJQ55_00115 PF02481 DNA recombination-mediator protein A GJQ55_00115 PF17782 DprA winged helix domain GJQ55_00120 PF01300 Telomere recombination GJQ55_00125 PF01218 Coproporphyrinogen III oxidase GJQ55_00130 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GJQ55_00130 PF01488 Shikimate / quinate 5-dehydrogenase GJQ55_00130 PF08501 Shikimate dehydrogenase substrate binding domain GJQ55_00155 PF01709 Transcriptional regulator GJQ55_00170 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH GJQ55_00180 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_00185 PF01432 Peptidase family M3 GJQ55_00210 PF06039 Malate:quinone oxidoreductase (Mqo) GJQ55_00215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GJQ55_00215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GJQ55_00220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GJQ55_00225 PF02233 NAD(P) transhydrogenase beta subunit GJQ55_00230 PF04264 YceI-like domain GJQ55_00235 PF01292 Prokaryotic cytochrome b561 GJQ55_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_00240 PF03466 LysR substrate binding domain GJQ55_00245 PF02630 SCO1/SenC GJQ55_00250 PF00082 Subtilase family GJQ55_00250 PF04151 Bacterial pre-peptidase C-terminal domain GJQ55_00255 PF01078 Magnesium chelatase, subunit ChlI GJQ55_00255 PF13335 Magnesium chelatase, subunit ChlI C-terminal GJQ55_00265 PF00580 UvrD/REP helicase N-terminal domain GJQ55_00265 PF13361 UvrD-like helicase C-terminal domain GJQ55_00275 PF03707 Bacterial signalling protein N terminal repeat GJQ55_00275 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_00275 PF00563 EAL domain GJQ55_00285 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_00285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GJQ55_00285 PF00072 Response regulator receiver domain GJQ55_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_00285 PF01627 Hpt domain GJQ55_00285 PF00672 HAMP domain GJQ55_00290 PF00072 Response regulator receiver domain GJQ55_00320 PF01380 SIS domain GJQ55_00325 PF00455 DeoR C terminal sensor domain GJQ55_00325 PF08220 DeoR-like helix-turn-helix domain GJQ55_00330 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_00340 PF13462 Thioredoxin GJQ55_00345 PF00034 Cytochrome c GJQ55_00350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GJQ55_00355 PF01926 50S ribosome-binding GTPase GJQ55_00360 PF00950 ABC 3 transport family GJQ55_00365 PF00005 ABC transporter GJQ55_00370 PF01475 Ferric uptake regulator family GJQ55_00375 PF01297 Zinc-uptake complex component A periplasmic GJQ55_00380 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_00380 PF14602 Hexapeptide repeat of succinyl-transferase GJQ55_00380 PF12804 MobA-like NTP transferase domain GJQ55_00385 PF04172 LrgB-like family GJQ55_00390 PF03788 LrgA family GJQ55_00400 PF01594 AI-2E family transporter GJQ55_00405 PF00072 Response regulator receiver domain GJQ55_00405 PF00486 Transcriptional regulatory protein, C terminal GJQ55_00410 PF00672 HAMP domain GJQ55_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_00410 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_00410 PF16750 Sensor domain of 2-component histidine kinase GJQ55_00415 PF00390 Malic enzyme, N-terminal domain GJQ55_00415 PF03949 Malic enzyme, NAD binding domain GJQ55_00425 PF00679 Elongation factor G C-terminus GJQ55_00425 PF00009 Elongation factor Tu GTP binding domain GJQ55_00425 PF03144 Elongation factor Tu domain 2 GJQ55_00430 PF03951 Glutamine synthetase, beta-Grasp domain GJQ55_00430 PF00120 Glutamine synthetase, catalytic domain GJQ55_00445 PF01812 5-formyltetrahydrofolate cyclo-ligase family GJQ55_00455 PF05164 Cell division protein ZapA GJQ55_00470 PF00557 Metallopeptidase family M24 GJQ55_00470 PF05195 Aminopeptidase P, N-terminal domain GJQ55_00475 PF01494 FAD binding domain GJQ55_00480 PF01494 FAD binding domain GJQ55_00485 PF03061 Thioesterase superfamily GJQ55_00490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GJQ55_00505 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_00510 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_00515 PF00005 ABC transporter GJQ55_00520 PF01895 PhoU domain GJQ55_00525 PF00267 Gram-negative porin GJQ55_00530 PF11808 Phosphate regulon sensor protein PhoR GJQ55_00530 PF00989 PAS fold GJQ55_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_00530 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_00535 PF00486 Transcriptional regulatory protein, C terminal GJQ55_00535 PF00072 Response regulator receiver domain GJQ55_00555 PF00588 SpoU rRNA Methylase family GJQ55_00555 PF12105 SpoU, rRNA methylase, C-terminal GJQ55_00565 PF00072 Response regulator receiver domain GJQ55_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_00570 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_00570 PF00989 PAS fold GJQ55_00570 PF11808 Phosphate regulon sensor protein PhoR GJQ55_00575 PF00072 Response regulator receiver domain GJQ55_00575 PF00486 Transcriptional regulatory protein, C terminal GJQ55_00580 PF01040 UbiA prenyltransferase family GJQ55_00585 PF04345 Chorismate lyase GJQ55_00590 PF00301 Rubredoxin GJQ55_00595 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_00595 PF18113 Rubredoxin binding C-terminal domain GJQ55_00600 PF00216 Bacterial DNA-binding protein GJQ55_00615 PF00375 Sodium:dicarboxylate symporter family GJQ55_00625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJQ55_00625 PF07498 Rho termination factor, N-terminal domain GJQ55_00625 PF07497 Rho termination factor, RNA-binding domain GJQ55_00630 PF00085 Thioredoxin GJQ55_00635 PF02541 Ppx/GppA phosphatase family GJQ55_00640 PF07731 Multicopper oxidase GJQ55_00640 PF07732 Multicopper oxidase GJQ55_00640 PF00394 Multicopper oxidase GJQ55_00650 PF17941 Polyphosphate kinase C-terminal domain 1 GJQ55_00650 PF13090 Polyphosphate kinase C-terminal domain 2 GJQ55_00650 PF13089 Polyphosphate kinase N-terminal domain GJQ55_00650 PF02503 Polyphosphate kinase middle domain GJQ55_00655 PF00490 Delta-aminolevulinic acid dehydratase GJQ55_00660 PF03061 Thioesterase superfamily GJQ55_00670 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GJQ55_00675 PF00585 C-terminal regulatory domain of Threonine dehydratase GJQ55_00675 PF00291 Pyridoxal-phosphate dependent enzyme GJQ55_00680 PF01553 Acyltransferase GJQ55_00685 PF01713 Smr domain GJQ55_00700 PF13193 AMP-binding enzyme C-terminal domain GJQ55_00700 PF00501 AMP-binding enzyme GJQ55_00710 PF00561 alpha/beta hydrolase fold GJQ55_00715 PF00561 alpha/beta hydrolase fold GJQ55_00715 PF07021 Methionine biosynthesis protein MetW GJQ55_00725 PF01725 Ham1 family GJQ55_00730 PF04055 Radical SAM superfamily GJQ55_00730 PF06969 HemN C-terminal domain GJQ55_00740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GJQ55_00750 PF00696 Amino acid kinase family GJQ55_00750 PF13840 ACT domain GJQ55_00755 PF06339 Ectoine synthase GJQ55_00760 PF00202 Aminotransferase class-III GJQ55_00765 PF00583 Acetyltransferase (GNAT) family GJQ55_00775 PF02803 Thiolase, C-terminal domain GJQ55_00775 PF00108 Thiolase, N-terminal domain GJQ55_00785 PF00902 Sec-independent protein translocase protein (TatC) GJQ55_00790 PF02416 mttA/Hcf106 family GJQ55_00795 PF02416 mttA/Hcf106 family GJQ55_00800 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GJQ55_00805 PF01502 Phosphoribosyl-AMP cyclohydrolase GJQ55_00810 PF03109 ABC1 family GJQ55_00820 PF01209 ubiE/COQ5 methyltransferase family GJQ55_00835 PF01738 Dienelactone hydrolase family GJQ55_00840 PF00916 Sulfate permease family GJQ55_00840 PF01740 STAS domain GJQ55_00845 PF02594 Uncharacterised ACR, YggU family COG1872 GJQ55_00850 PF02325 YGGT family GJQ55_00855 PF14748 Pyrroline-5-carboxylate reductase dimerisation GJQ55_00855 PF03807 NADP oxidoreductase coenzyme F420-dependent GJQ55_00860 PF01168 Alanine racemase, N-terminal domain GJQ55_00865 PF00437 Type II/IV secretion system protein GJQ55_00870 PF00437 Type II/IV secretion system protein GJQ55_00875 PF03707 Bacterial signalling protein N terminal repeat GJQ55_00875 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_00875 PF00563 EAL domain GJQ55_00880 PF04231 Endonuclease I GJQ55_00885 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_00890 PF13533 Biotin-lipoyl like GJQ55_00895 PF00005 ABC transporter GJQ55_00905 PF12801 4Fe-4S binding domain GJQ55_00905 PF04205 FMN-binding domain GJQ55_00910 PF18793 Nitrous oxide reductase propeller repeat 2 GJQ55_00910 PF18764 Nitrous oxide reductase propeller repeat GJQ55_00910 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GJQ55_00915 PF05048 Periplasmic copper-binding protein (NosD) GJQ55_00920 PF00005 ABC transporter GJQ55_00925 PF12679 ABC-2 family transporter protein GJQ55_00930 PF05573 NosL GJQ55_00935 PF02416 mttA/Hcf106 family GJQ55_00945 PF00171 Aldehyde dehydrogenase family GJQ55_00955 PF08240 Alcohol dehydrogenase GroES-like domain GJQ55_00955 PF00107 Zinc-binding dehydrogenase GJQ55_00975 PF02690 Na+/Pi-cotransporter GJQ55_00980 PF00294 pfkB family carbohydrate kinase GJQ55_00985 PF02237 Biotin protein ligase C terminal domain GJQ55_00985 PF03099 Biotin/lipoate A/B protein ligase family GJQ55_00985 PF08279 HTH domain GJQ55_00990 PF03309 Type III pantothenate kinase GJQ55_01015 PF00009 Elongation factor Tu GTP binding domain GJQ55_01015 PF03143 Elongation factor Tu C-terminal domain GJQ55_01015 PF03144 Elongation factor Tu domain 2 GJQ55_01025 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GJQ55_01030 PF00467 KOW motif GJQ55_01030 PF02357 Transcription termination factor nusG GJQ55_01035 PF00298 Ribosomal protein L11, RNA binding domain GJQ55_01035 PF03946 Ribosomal protein L11, N-terminal domain GJQ55_01040 PF00687 Ribosomal protein L1p/L10e family GJQ55_01045 PF00466 Ribosomal protein L10 GJQ55_01050 PF00542 Ribosomal protein L7/L12 C-terminal domain GJQ55_01050 PF16320 Ribosomal protein L7/L12 dimerisation domain GJQ55_01055 PF00562 RNA polymerase Rpb2, domain 6 GJQ55_01055 PF04560 RNA polymerase Rpb2, domain 7 GJQ55_01055 PF04565 RNA polymerase Rpb2, domain 3 GJQ55_01055 PF04561 RNA polymerase Rpb2, domain 2 GJQ55_01055 PF10385 RNA polymerase beta subunit external 1 domain GJQ55_01055 PF04563 RNA polymerase beta subunit GJQ55_01060 PF04997 RNA polymerase Rpb1, domain 1 GJQ55_01060 PF00623 RNA polymerase Rpb1, domain 2 GJQ55_01060 PF04983 RNA polymerase Rpb1, domain 3 GJQ55_01060 PF05000 RNA polymerase Rpb1, domain 4 GJQ55_01060 PF04998 RNA polymerase Rpb1, domain 5 GJQ55_01065 PF00164 Ribosomal protein S12/S23 GJQ55_01070 PF00177 Ribosomal protein S7p/S5e GJQ55_01075 PF00679 Elongation factor G C-terminus GJQ55_01075 PF14492 Elongation Factor G, domain II GJQ55_01075 PF00009 Elongation factor Tu GTP binding domain GJQ55_01075 PF03144 Elongation factor Tu domain 2 GJQ55_01075 PF03764 Elongation factor G, domain IV GJQ55_01080 PF00009 Elongation factor Tu GTP binding domain GJQ55_01080 PF03143 Elongation factor Tu C-terminal domain GJQ55_01080 PF03144 Elongation factor Tu domain 2 GJQ55_01085 PF03144 Elongation factor Tu domain 2 GJQ55_01085 PF00679 Elongation factor G C-terminus GJQ55_01085 PF14492 Elongation Factor G, domain II GJQ55_01085 PF00009 Elongation factor Tu GTP binding domain GJQ55_01085 PF03764 Elongation factor G, domain IV GJQ55_01090 PF03143 Elongation factor Tu C-terminal domain GJQ55_01090 PF03144 Elongation factor Tu domain 2 GJQ55_01090 PF00009 Elongation factor Tu GTP binding domain GJQ55_01095 PF00338 Ribosomal protein S10p/S20e GJQ55_01100 PF00297 Ribosomal protein L3 GJQ55_01105 PF00573 Ribosomal protein L4/L1 family GJQ55_01110 PF00276 Ribosomal protein L23 GJQ55_01115 PF03947 Ribosomal Proteins L2, C-terminal domain GJQ55_01115 PF00181 Ribosomal Proteins L2, RNA binding domain GJQ55_01120 PF00203 Ribosomal protein S19 GJQ55_01125 PF00237 Ribosomal protein L22p/L17e GJQ55_01130 PF00189 Ribosomal protein S3, C-terminal domain GJQ55_01130 PF07650 KH domain GJQ55_01135 PF00252 Ribosomal protein L16p/L10e GJQ55_01140 PF00831 Ribosomal L29 protein GJQ55_01145 PF00366 Ribosomal protein S17 GJQ55_01150 PF00238 Ribosomal protein L14p/L23e GJQ55_01155 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GJQ55_01155 PF00467 KOW motif GJQ55_01160 PF00673 ribosomal L5P family C-terminus GJQ55_01160 PF00281 Ribosomal protein L5 GJQ55_01165 PF00253 Ribosomal protein S14p/S29e GJQ55_01170 PF00410 Ribosomal protein S8 GJQ55_01175 PF00347 Ribosomal protein L6 GJQ55_01180 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GJQ55_01185 PF00333 Ribosomal protein S5, N-terminal domain GJQ55_01185 PF03719 Ribosomal protein S5, C-terminal domain GJQ55_01190 PF00327 Ribosomal protein L30p/L7e GJQ55_01195 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GJQ55_01200 PF00344 SecY translocase GJQ55_01205 PF00444 Ribosomal protein L36 GJQ55_01210 PF00416 Ribosomal protein S13/S18 GJQ55_01215 PF00411 Ribosomal protein S11 GJQ55_01220 PF00163 Ribosomal protein S4/S9 N-terminal domain GJQ55_01220 PF01479 S4 domain GJQ55_01225 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GJQ55_01225 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GJQ55_01225 PF01000 RNA polymerase Rpb3/RpoA insert domain GJQ55_01230 PF01196 Ribosomal protein L17 GJQ55_01235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GJQ55_01255 PF00563 EAL domain GJQ55_01255 PF00196 Bacterial regulatory proteins, luxR family GJQ55_01260 PF00072 Response regulator receiver domain GJQ55_01260 PF00158 Sigma-54 interaction domain GJQ55_01260 PF02954 Bacterial regulatory protein, Fis family GJQ55_01265 PF01654 Cytochrome bd terminal oxidase subunit I GJQ55_01270 PF02322 Cytochrome bd terminal oxidase subunit II GJQ55_01275 PF08173 Membrane bound YbgT-like protein GJQ55_01280 PF00581 Rhodanese-like domain GJQ55_01295 PF13244 Domain of unknown function (DUF4040) GJQ55_01295 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter GJQ55_01295 PF00361 Proton-conducting membrane transporter GJQ55_01295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GJQ55_01300 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GJQ55_01305 PF00361 Proton-conducting membrane transporter GJQ55_01310 PF01899 Na+/H+ ion antiporter subunit GJQ55_01315 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) GJQ55_01320 PF03334 Na+/H+ antiporter subunit GJQ55_01325 PF18073 Rubredoxin metal binding domain GJQ55_01330 PF01053 Cys/Met metabolism PLP-dependent enzyme GJQ55_01345 PF04452 RNA methyltransferase GJQ55_01355 PF13677 Membrane MotB of proton-channel complex MotA/MotB GJQ55_01355 PF00691 OmpA family GJQ55_01360 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_01365 PF02609 Exonuclease VII small subunit GJQ55_01370 PF00348 Polyprenyl synthetase GJQ55_01375 PF02780 Transketolase, C-terminal domain GJQ55_01375 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GJQ55_01375 PF02779 Transketolase, pyrimidine binding domain GJQ55_01380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_01380 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_01380 PF00989 PAS fold GJQ55_01385 PF02954 Bacterial regulatory protein, Fis family GJQ55_01385 PF00072 Response regulator receiver domain GJQ55_01385 PF00158 Sigma-54 interaction domain GJQ55_01390 PF00925 GTP cyclohydrolase II GJQ55_01395 PF04298 Putative neutral zinc metallopeptidase GJQ55_01400 PF01022 Bacterial regulatory protein, arsR family GJQ55_01405 PF01758 Sodium Bile acid symporter family GJQ55_01410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GJQ55_01410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GJQ55_01420 PF00107 Zinc-binding dehydrogenase GJQ55_01420 PF08240 Alcohol dehydrogenase GroES-like domain GJQ55_01435 PF00571 CBS domain GJQ55_01435 PF00478 IMP dehydrogenase / GMP reductase domain GJQ55_01445 PF00072 Response regulator receiver domain GJQ55_01445 PF00486 Transcriptional regulatory protein, C terminal GJQ55_01450 PF16750 Sensor domain of 2-component histidine kinase GJQ55_01450 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_01450 PF00672 HAMP domain GJQ55_01460 PF03060 Nitronate monooxygenase GJQ55_01465 PF00561 alpha/beta hydrolase fold GJQ55_01470 PF03280 Proteobacterial lipase chaperone protein GJQ55_01475 PF00459 Inositol monophosphatase family GJQ55_01480 PF13472 GDSL-like Lipase/Acylhydrolase family GJQ55_01485 PF00005 ABC transporter GJQ55_01495 PF02492 CobW/HypB/UreG, nucleotide-binding domain GJQ55_01495 PF07683 Cobalamin synthesis protein cobW C-terminal domain GJQ55_01505 PF00781 Diacylglycerol kinase catalytic domain GJQ55_01520 PF03061 Thioesterase superfamily GJQ55_01530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GJQ55_01530 PF02805 Metal binding domain of Ada GJQ55_01530 PF12833 Helix-turn-helix domain GJQ55_01530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GJQ55_01535 PF09423 PhoD-like phosphatase GJQ55_01535 PF16655 PhoD-like phosphatase, N-terminal domain GJQ55_01540 PF00561 alpha/beta hydrolase fold GJQ55_01545 PF01145 SPFH domain / Band 7 family GJQ55_01555 PF09335 SNARE associated Golgi protein GJQ55_01560 PF01053 Cys/Met metabolism PLP-dependent enzyme GJQ55_01565 PF00849 RNA pseudouridylate synthase GJQ55_01565 PF01479 S4 domain GJQ55_01615 PF00743 Flavin-binding monooxygenase-like GJQ55_01620 PF00561 alpha/beta hydrolase fold GJQ55_01635 PF04073 Aminoacyl-tRNA editing domain GJQ55_01650 PF00586 AIR synthase related protein, N-terminal domain GJQ55_01650 PF02769 AIR synthase related protein, C-terminal domain GJQ55_01655 PF01029 NusB family GJQ55_01660 PF00885 6,7-dimethyl-8-ribityllumazine synthase GJQ55_01665 PF00925 GTP cyclohydrolase II GJQ55_01665 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GJQ55_01670 PF00677 Lumazine binding domain GJQ55_01675 PF01872 RibD C-terminal domain GJQ55_01675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GJQ55_01680 PF03477 ATP cone domain GJQ55_01690 PF00464 Serine hydroxymethyltransferase GJQ55_01695 PF00563 EAL domain GJQ55_01695 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_01695 PF03707 Bacterial signalling protein N terminal repeat GJQ55_01700 PF12848 ABC transporter GJQ55_01700 PF00005 ABC transporter GJQ55_01705 PF07238 PilZ domain GJQ55_01710 PF01557 Fumarylacetoacetate (FAA) hydrolase family GJQ55_01715 PF00436 Single-strand binding protein family GJQ55_01720 PF07690 Major Facilitator Superfamily GJQ55_01725 PF00196 Bacterial regulatory proteins, luxR family GJQ55_01730 PF17755 UvrA DNA-binding domain GJQ55_01730 PF17760 UvrA interaction domain GJQ55_01770 PF02666 Phosphatidylserine decarboxylase GJQ55_01775 PF00581 Rhodanese-like domain GJQ55_01785 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_01790 PF00691 OmpA family GJQ55_01790 PF13677 Membrane MotB of proton-channel complex MotA/MotB GJQ55_01795 PF03193 RsgA GTPase GJQ55_01800 PF00929 Exonuclease GJQ55_01805 PF17151 Periplasmic sensor domain GJQ55_01805 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_01810 PF08331 Domain of unknown function (DUF1730) GJQ55_01815 PF01256 Carbohydrate kinase GJQ55_01815 PF03853 YjeF-related protein N-terminus GJQ55_01820 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GJQ55_01825 PF01520 N-acetylmuramoyl-L-alanine amidase GJQ55_01825 PF11741 AMIN domain GJQ55_01830 PF01119 DNA mismatch repair protein, C-terminal domain GJQ55_01830 PF08676 MutL C terminal dimerisation domain GJQ55_01840 PF17209 Hfq protein GJQ55_01845 PF16360 GTP-binding GTPase Middle Region GJQ55_01845 PF13167 GTP-binding GTPase N-terminal GJQ55_01845 PF01926 50S ribosome-binding GTPase GJQ55_01850 PF01145 SPFH domain / Band 7 family GJQ55_01850 PF12221 Bacterial membrane protein N terminal GJQ55_01855 PF01145 SPFH domain / Band 7 family GJQ55_01865 PF13393 Histidyl-tRNA synthetase GJQ55_01870 PF00709 Adenylosuccinate synthetase GJQ55_01880 PF03079 ARD/ARD' family GJQ55_01885 PF00596 Class II Aldolase and Adducin N-terminal domain GJQ55_01890 PF01008 Initiation factor 2 subunit family GJQ55_01895 PF00342 Phosphoglucose isomerase GJQ55_01900 PF02261 Aspartate decarboxylase GJQ55_01905 PF02569 Pantoate-beta-alanine ligase GJQ55_01910 PF02548 Ketopantoate hydroxymethyltransferase GJQ55_01915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GJQ55_01920 PF01743 Poly A polymerase head domain GJQ55_01920 PF12626 Polymerase A arginine-rich C-terminus GJQ55_01920 PF12627 Probable RNA and SrmB- binding site of polymerase A GJQ55_01930 PF00005 ABC transporter GJQ55_01935 PF01032 FecCD transport family GJQ55_01950 PF03749 Sugar fermentation stimulation protein RE domain GJQ55_01950 PF17746 SfsA N-terminal OB domain GJQ55_01955 PF00155 Aminotransferase class I and II GJQ55_01960 PF01258 Prokaryotic dksA/traR C4-type zinc finger GJQ55_01965 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJQ55_01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_01970 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_01970 PF00989 PAS fold GJQ55_01970 PF08447 PAS fold GJQ55_01975 PF02954 Bacterial regulatory protein, Fis family GJQ55_01975 PF00072 Response regulator receiver domain GJQ55_01975 PF00158 Sigma-54 interaction domain GJQ55_01995 PF00136 DNA polymerase family B GJQ55_01995 PF03104 DNA polymerase family B, exonuclease domain GJQ55_02005 PF03942 DTW domain GJQ55_02015 PF02355 Protein export membrane protein GJQ55_02015 PF07549 SecD/SecF GG Motif GJQ55_02020 PF01699 Sodium/calcium exchanger protein GJQ55_02040 PF03572 Peptidase family S41 GJQ55_02040 PF13180 PDZ domain GJQ55_02045 PF01551 Peptidase family M23 GJQ55_02045 PF01551 Peptidase family M23 GJQ55_02050 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GJQ55_02050 PF01676 Metalloenzyme superfamily GJQ55_02055 PF00581 Rhodanese-like domain GJQ55_02060 PF02556 Preprotein translocase subunit SecB GJQ55_02065 PF07995 Glucose / Sorbosone dehydrogenase GJQ55_02070 PF00588 SpoU rRNA Methylase family GJQ55_02080 PF02954 Bacterial regulatory protein, Fis family GJQ55_02080 PF00072 Response regulator receiver domain GJQ55_02080 PF00158 Sigma-54 interaction domain GJQ55_02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_02085 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_02085 PF00989 PAS fold GJQ55_02095 PF04247 Invasion gene expression up-regulator, SirB GJQ55_02100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_02100 PF00672 HAMP domain GJQ55_02100 PF02743 Cache domain GJQ55_02110 PF01169 Uncharacterized protein family UPF0016 GJQ55_02135 PF03776 Septum formation topological specificity factor MinE GJQ55_02140 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GJQ55_02145 PF03775 Septum formation inhibitor MinC, C-terminal domain GJQ55_02145 PF05209 Septum formation inhibitor MinC, N-terminal domain GJQ55_02155 PF00817 impB/mucB/samB family GJQ55_02155 PF11799 impB/mucB/samB family C-terminal domain GJQ55_02155 PF11798 IMS family HHH motif GJQ55_02160 PF01569 PAP2 superfamily GJQ55_02165 PF13439 Glycosyltransferase Family 4 GJQ55_02165 PF00534 Glycosyl transferases group 1 GJQ55_02170 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJQ55_02170 PF12833 Helix-turn-helix domain GJQ55_02210 PF01266 FAD dependent oxidoreductase GJQ55_02240 PF00534 Glycosyl transferases group 1 GJQ55_02240 PF13439 Glycosyltransferase Family 4 GJQ55_02245 PF03330 Lytic transglycolase GJQ55_02245 PF05036 Sporulation related domain GJQ55_02250 PF13406 Transglycosylase SLT domain GJQ55_02255 PF01098 Cell cycle protein GJQ55_02260 PF03717 Penicillin-binding Protein dimerisation domain GJQ55_02260 PF00905 Penicillin binding protein transpeptidase domain GJQ55_02265 PF02590 Predicted SPOUT methyltransferase GJQ55_02275 PF01467 Cytidylyltransferase-like GJQ55_02280 PF00171 Aldehyde dehydrogenase family GJQ55_02290 PF13188 PAS domain GJQ55_02290 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_02290 PF00563 EAL domain GJQ55_02290 PF03707 Bacterial signalling protein N terminal repeat GJQ55_02310 PF02810 SEC-C motif GJQ55_02325 PF07943 Penicillin-binding protein 5, C-terminal domain GJQ55_02325 PF00768 D-alanyl-D-alanine carboxypeptidase GJQ55_02330 PF04359 Protein of unknown function (DUF493) GJQ55_02335 PF03099 Biotin/lipoate A/B protein ligase family GJQ55_02340 PF04055 Radical SAM superfamily GJQ55_02340 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GJQ55_02350 PF00085 Thioredoxin GJQ55_02360 PF03449 Transcription elongation factor, N-terminal GJQ55_02360 PF01272 Transcription elongation factor, GreA/GreB, C-term GJQ55_02365 PF11412 Disulphide bond corrector protein DsbC GJQ55_02365 PF02683 Cytochrome C biogenesis protein transmembrane region GJQ55_02370 PF00348 Polyprenyl synthetase GJQ55_02375 PF00829 Ribosomal prokaryotic L21 protein GJQ55_02380 PF01016 Ribosomal L27 protein GJQ55_02385 PF01926 50S ribosome-binding GTPase GJQ55_02385 PF01018 GTP1/OBG GJQ55_02390 PF01472 PUA domain GJQ55_02390 PF00696 Amino acid kinase family GJQ55_02395 PF00793 DAHP synthetase I family GJQ55_02400 PF01649 Ribosomal protein S20 GJQ55_02405 PF03023 Lipid II flippase MurJ GJQ55_02410 PF01687 Riboflavin kinase GJQ55_02410 PF06574 FAD synthetase GJQ55_02415 PF08264 Anticodon-binding domain of tRNA GJQ55_02415 PF06827 Zinc finger found in FPG and IleRS GJQ55_02415 PF00133 tRNA synthetases class I (I, L, M and V) GJQ55_02420 PF01252 Signal peptidase (SPase) II GJQ55_02425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_02430 PF02401 LytB protein GJQ55_02455 PF05567 Neisseria PilC beta-propeller domain GJQ55_02465 PF07963 Prokaryotic N-terminal methylation motif GJQ55_02465 PF14245 Type IV pilin PilA GJQ55_02470 PF02954 Bacterial regulatory protein, Fis family GJQ55_02470 PF00072 Response regulator receiver domain GJQ55_02470 PF00158 Sigma-54 interaction domain GJQ55_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_02475 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_02480 PF00795 Carbon-nitrogen hydrolase GJQ55_02480 PF02540 NAD synthase GJQ55_02485 PF13525 Outer membrane lipoprotein GJQ55_02490 PF00849 RNA pseudouridylate synthase GJQ55_02490 PF01479 S4 domain GJQ55_02495 PF02578 Multi-copper polyphenol oxidoreductase laccase GJQ55_02505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GJQ55_02505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GJQ55_02505 PF00205 Thiamine pyrophosphate enzyme, central domain GJQ55_02510 PF10369 Small subunit of acetolactate synthase GJQ55_02515 PF00472 RF-1 domain GJQ55_02520 PF03006 Haemolysin-III related GJQ55_02525 PF01541 GIY-YIG catalytic domain GJQ55_02545 PF00263 Bacterial type II and III secretion system protein GJQ55_02545 PF03958 Bacterial type II/III secretion system short domain GJQ55_02550 PF02545 Maf-like protein GJQ55_02555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GJQ55_02555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GJQ55_02585 PF05681 Fumarate hydratase (Fumerase) GJQ55_02585 PF05683 Fumarase C-terminus GJQ55_02590 PF11892 Domain of unknown function (DUF3412) GJQ55_02590 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GJQ55_02590 PF03641 Possible lysine decarboxylase GJQ55_02595 PF00571 CBS domain GJQ55_02595 PF03448 MgtE intracellular N domain GJQ55_02595 PF01769 Divalent cation transporter GJQ55_02600 PF00909 Ammonium Transporter Family GJQ55_02610 PF01842 ACT domain GJQ55_02610 PF00551 Formyl transferase GJQ55_02615 PF02803 Thiolase, C-terminal domain GJQ55_02615 PF00108 Thiolase, N-terminal domain GJQ55_02625 PF07044 Protein of unknown function (DUF1329) GJQ55_02635 PF01636 Phosphotransferase enzyme family GJQ55_02640 PF00156 Phosphoribosyl transferase domain GJQ55_02645 PF06968 Biotin and Thiamin Synthesis associated domain GJQ55_02645 PF04055 Radical SAM superfamily GJQ55_02660 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_02660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_02660 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJQ55_02660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_02665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_02665 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJQ55_02665 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_02665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_02685 PF04715 Anthranilate synthase component I, N terminal region GJQ55_02685 PF00425 chorismate binding enzyme GJQ55_02690 PF00117 Glutamine amidotransferase class-I GJQ55_02695 PF00591 Glycosyl transferase family, a/b domain GJQ55_02695 PF02885 Glycosyl transferase family, helical bundle domain GJQ55_02700 PF00218 Indole-3-glycerol phosphate synthase GJQ55_02710 PF00834 Ribulose-phosphate 3 epimerase family GJQ55_02715 PF13419 Haloacid dehalogenase-like hydrolase GJQ55_02720 PF11849 Domain of unknown function (DUF3369) GJQ55_02725 PF13545 Crp-like helix-turn-helix domain GJQ55_02725 PF00027 Cyclic nucleotide-binding domain GJQ55_02730 PF02566 OsmC-like protein GJQ55_02735 PF02675 S-adenosylmethionine decarboxylase GJQ55_02750 PF08468 Methyltransferase small domain N-terminal GJQ55_02750 PF05175 Methyltransferase small domain GJQ55_02755 PF13411 MerR HTH family regulatory protein GJQ55_02760 PF13426 PAS domain GJQ55_02760 PF01740 STAS domain GJQ55_02765 PF00719 Inorganic pyrophosphatase GJQ55_02770 PF07715 TonB-dependent Receptor Plug Domain GJQ55_02770 PF00593 TonB dependent receptor GJQ55_02780 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GJQ55_02785 PF01225 Mur ligase family, catalytic domain GJQ55_02785 PF02875 Mur ligase family, glutamate ligase domain GJQ55_02785 PF08245 Mur ligase middle domain GJQ55_02790 PF02441 Flavoprotein GJQ55_02805 PF00672 HAMP domain GJQ55_02805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_02805 PF12729 Four helix bundle sensory module for signal transduction GJQ55_02825 PF06144 DNA polymerase III, delta subunit GJQ55_02825 PF14840 Processivity clamp loader gamma complex DNA pol III C-term GJQ55_02830 PF04390 Lipopolysaccharide-assembly GJQ55_02835 PF00133 tRNA synthetases class I (I, L, M and V) GJQ55_02835 PF13603 Leucyl-tRNA synthetase, Domain 2 GJQ55_02835 PF08264 Anticodon-binding domain of tRNA GJQ55_02845 PF05378 Hydantoinase/oxoprolinase N-terminal region GJQ55_02845 PF01968 Hydantoinase/oxoprolinase GJQ55_02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_02850 PF08447 PAS fold GJQ55_02855 PF00462 Glutaredoxin GJQ55_02860 PF00196 Bacterial regulatory proteins, luxR family GJQ55_02860 PF00072 Response regulator receiver domain GJQ55_02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_02865 PF03466 LysR substrate binding domain GJQ55_02900 PF00106 short chain dehydrogenase GJQ55_02915 PF03441 FAD binding domain of DNA photolyase GJQ55_02915 PF00875 DNA photolyase GJQ55_02920 PF13411 MerR HTH family regulatory protein GJQ55_02935 PF01593 Flavin containing amine oxidoreductase GJQ55_02940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_02940 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJQ55_02940 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_02940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_02945 PF08338 Domain of unknown function (DUF1731) GJQ55_02945 PF01370 NAD dependent epimerase/dehydratase family GJQ55_02960 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_02965 PF00005 ABC transporter GJQ55_02965 PF03459 TOBE domain GJQ55_02970 PF01645 Conserved region in glutamate synthase GJQ55_02975 PF17831 Pyruvate dehydrogenase E1 component middle domain GJQ55_02975 PF00456 Transketolase, thiamine diphosphate binding domain GJQ55_02980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GJQ55_02980 PF00364 Biotin-requiring enzyme GJQ55_02980 PF02817 e3 binding domain GJQ55_02985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_02990 PF01923 Cobalamin adenosyltransferase GJQ55_03000 PF08546 Ketopantoate reductase PanE/ApbA C terminal GJQ55_03000 PF02558 Ketopantoate reductase PanE/ApbA GJQ55_03005 PF04461 Protein of unknown function (DUF520) GJQ55_03010 PF07690 Major Facilitator Superfamily GJQ55_03015 PF00480 ROK family GJQ55_03025 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase GJQ55_03030 PF02277 Phosphoribosyltransferase GJQ55_03040 PF02654 Cobalamin-5-phosphate synthase GJQ55_03050 PF03186 CobD/Cbib protein GJQ55_03055 PF00155 Aminotransferase class I and II GJQ55_03060 PF01497 Periplasmic binding protein GJQ55_03065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GJQ55_03080 PF00210 Ferritin-like domain GJQ55_03085 PF02535 ZIP Zinc transporter GJQ55_03100 PF09285 Elongation factor P, C-terminal GJQ55_03100 PF01132 Elongation factor P (EF-P) OB domain GJQ55_03100 PF08207 Elongation factor P (EF-P) KOW-like domain GJQ55_03105 PF03707 Bacterial signalling protein N terminal repeat GJQ55_03105 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_03105 PF00563 EAL domain GJQ55_03110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_03110 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_03115 PF02146 Sir2 family GJQ55_03120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GJQ55_03120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GJQ55_03125 PF01070 FMN-dependent dehydrogenase GJQ55_03130 PF00890 FAD binding domain GJQ55_03135 PF13091 PLD-like domain GJQ55_03145 PF01668 SmpB protein GJQ55_03150 PF00209 Sodium:neurotransmitter symporter family GJQ55_03155 PF03364 Polyketide cyclase / dehydrase and lipid transport GJQ55_03160 PF03658 RnfH family Ubiquitin GJQ55_03165 PF04355 SmpA / OmlA family GJQ55_03170 PF01475 Ferric uptake regulator family GJQ55_03175 PF02463 RecF/RecN/SMC N terminal domain GJQ55_03180 PF01025 GrpE GJQ55_03185 PF00012 Hsp70 protein GJQ55_03190 PF00226 DnaJ domain GJQ55_03190 PF01556 DnaJ C terminal domain GJQ55_03190 PF00684 DnaJ central domain GJQ55_03195 PF01113 Dihydrodipicolinate reductase, N-terminus GJQ55_03195 PF05173 Dihydrodipicolinate reductase, C-terminus GJQ55_03200 PF00440 Bacterial regulatory proteins, tetR family GJQ55_03205 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GJQ55_03205 PF00117 Glutamine amidotransferase class-I GJQ55_03210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJQ55_03210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GJQ55_03210 PF02142 MGS-like domain GJQ55_03215 PF01272 Transcription elongation factor, GreA/GreB, C-term GJQ55_03215 PF03449 Transcription elongation factor, N-terminal GJQ55_03220 PF03061 Thioesterase superfamily GJQ55_03225 PF07977 FabA-like domain GJQ55_03230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GJQ55_03230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GJQ55_03235 PF01985 CRS1 / YhbY (CRM) domain GJQ55_03240 PF01728 FtsJ-like methyltransferase GJQ55_03245 PF17862 AAA+ lid domain GJQ55_03245 PF06480 FtsH Extracellular GJQ55_03245 PF01434 Peptidase family M41 GJQ55_03245 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_03250 PF00809 Pterin binding enzyme GJQ55_03255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJQ55_03255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJQ55_03255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJQ55_03255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJQ55_03260 PF00121 Triosephosphate isomerase GJQ55_03265 PF03840 Preprotein translocase SecG subunit GJQ55_03275 PF02576 RimP N-terminal domain GJQ55_03275 PF17384 RimP C-terminal SH3 domain GJQ55_03280 PF08529 NusA N-terminal domain GJQ55_03280 PF13184 NusA-like KH domain GJQ55_03280 PF00575 S1 RNA binding domain GJQ55_03285 PF11987 Translation-initiation factor 2 GJQ55_03285 PF00009 Elongation factor Tu GTP binding domain GJQ55_03285 PF08364 Bacterial translation initiation factor IF-2 associated region GJQ55_03285 PF04760 Translation initiation factor IF-2, N-terminal region GJQ55_03290 PF02033 Ribosome-binding factor A GJQ55_03295 PF09157 Pseudouridine synthase II TruB, C-terminal GJQ55_03295 PF16198 tRNA pseudouridylate synthase B C-terminal domain GJQ55_03295 PF01509 TruB family pseudouridylate synthase (N terminal domain) GJQ55_03300 PF00312 Ribosomal protein S15 GJQ55_03305 PF00575 S1 RNA binding domain GJQ55_03305 PF03725 3' exoribonuclease family, domain 2 GJQ55_03305 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GJQ55_03305 PF00013 KH domain GJQ55_03305 PF01138 3' exoribonuclease family, domain 1 GJQ55_03325 PF02567 Phenazine biosynthesis-like protein GJQ55_03330 PF10996 Beta-Casp domain GJQ55_03330 PF00753 Metallo-beta-lactamase superfamily GJQ55_03330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GJQ55_03335 PF02885 Glycosyl transferase family, helical bundle domain GJQ55_03335 PF00591 Glycosyl transferase family, a/b domain GJQ55_03335 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GJQ55_03350 PF00743 Flavin-binding monooxygenase-like GJQ55_03355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GJQ55_03365 PF02515 CoA-transferase family III GJQ55_03370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_03370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_03370 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_03375 PF02803 Thiolase, C-terminal domain GJQ55_03375 PF00108 Thiolase, N-terminal domain GJQ55_03380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GJQ55_03380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GJQ55_03380 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_03385 PF11849 Domain of unknown function (DUF3369) GJQ55_03390 PF00672 HAMP domain GJQ55_03390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_03390 PF17200 Single Cache domain 2 GJQ55_03395 PF01926 50S ribosome-binding GTPase GJQ55_03395 PF06071 Protein of unknown function (DUF933) GJQ55_03400 PF01195 Peptidyl-tRNA hydrolase GJQ55_03405 PF14693 Ribosomal protein TL5, C-terminal domain GJQ55_03405 PF01386 Ribosomal L25p family GJQ55_03410 PF14572 Phosphoribosyl synthetase-associated domain GJQ55_03410 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GJQ55_03420 PF08544 GHMP kinases C terminal GJQ55_03420 PF00288 GHMP kinases N terminal domain GJQ55_03425 PF03550 Outer membrane lipoprotein LolB GJQ55_03435 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GJQ55_03435 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GJQ55_03435 PF01488 Shikimate / quinate 5-dehydrogenase GJQ55_03440 PF00472 RF-1 domain GJQ55_03440 PF03462 PCRF domain GJQ55_03445 PF17827 PrmC N-terminal domain GJQ55_03445 PF13847 Methyltransferase domain GJQ55_03450 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_03455 PF13580 SIS domain GJQ55_03460 PF02021 Uncharacterised protein family UPF0102 GJQ55_03465 PF04348 LppC putative lipoprotein GJQ55_03470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GJQ55_03500 PF05724 Thiopurine S-methyltransferase (TPMT) GJQ55_03505 PF18389 TrmO C-terminal domain GJQ55_03505 PF01980 tRNA-methyltransferase O GJQ55_03510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GJQ55_03570 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_03575 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_03580 PF02472 Biopolymer transport protein ExbD/TolR GJQ55_03585 PF03544 Gram-negative bacterial TonB protein C-terminal GJQ55_03600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_03605 PF01553 Acyltransferase GJQ55_03610 PF04102 SlyX GJQ55_03615 PF00313 'Cold-shock' DNA-binding domain GJQ55_03620 PF00459 Inositol monophosphatase family GJQ55_03625 PF00588 SpoU rRNA Methylase family GJQ55_03630 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_03635 PF02082 Transcriptional regulator GJQ55_03640 PF00266 Aminotransferase class-V GJQ55_03645 PF00334 Nucleoside diphosphate kinase GJQ55_03650 PF04055 Radical SAM superfamily GJQ55_03660 PF04551 GcpE protein GJQ55_03665 PF13393 Histidyl-tRNA synthetase GJQ55_03665 PF03129 Anticodon binding domain GJQ55_03670 PF09976 Tetratricopeptide repeat-like domain GJQ55_03675 PF13360 PQQ-like domain GJQ55_03680 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GJQ55_03680 PF01926 50S ribosome-binding GTPase GJQ55_03685 PF12729 Four helix bundle sensory module for signal transduction GJQ55_03685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_03685 PF00672 HAMP domain GJQ55_03695 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_03700 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_03700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_03700 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJQ55_03700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_03705 PF12833 Helix-turn-helix domain GJQ55_03705 PF02311 AraC-like ligand binding domain GJQ55_03710 PF04304 Protein of unknown function (DUF454) GJQ55_03715 PF12697 Alpha/beta hydrolase family GJQ55_03725 PF00005 ABC transporter GJQ55_03730 PF07715 TonB-dependent Receptor Plug Domain GJQ55_03730 PF00593 TonB dependent receptor GJQ55_03750 PF01814 Hemerythrin HHE cation binding domain GJQ55_03755 PF00939 Sodium:sulfate symporter transmembrane region GJQ55_03760 PF09334 tRNA synthetases class I (M) GJQ55_03760 PF01588 Putative tRNA binding domain GJQ55_03765 PF00571 CBS domain GJQ55_03765 PF03471 Transporter associated domain GJQ55_03765 PF01595 Cyclin M transmembrane N-terminal domain GJQ55_03775 PF02881 SRP54-type protein, helical bundle domain GJQ55_03775 PF00448 SRP54-type protein, GTPase domain GJQ55_03775 PF02978 Signal peptide binding domain GJQ55_03780 PF03350 Uncharacterized protein family, UPF0114 GJQ55_03785 PF01062 Bestrophin, RFP-TM, chloride channel GJQ55_03795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJQ55_03795 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_03805 PF00291 Pyridoxal-phosphate dependent enzyme GJQ55_03805 PF14821 Threonine synthase N terminus GJQ55_03815 PF00210 Ferritin-like domain GJQ55_03820 PF00210 Ferritin-like domain GJQ55_03840 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GJQ55_03840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GJQ55_03845 PF01261 Xylose isomerase-like TIM barrel GJQ55_03850 PF06945 Protein of unknown function (DUF1289) GJQ55_03855 PF00313 'Cold-shock' DNA-binding domain GJQ55_03860 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_03865 PF00633 Helix-hairpin-helix motif GJQ55_03865 PF00730 HhH-GPD superfamily base excision DNA repair protein GJQ55_03865 PF10576 Iron-sulfur binding domain of endonuclease III GJQ55_03870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GJQ55_03875 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase GJQ55_03880 PF04321 RmlD substrate binding domain GJQ55_03885 PF16363 GDP-mannose 4,6 dehydratase GJQ55_03890 PF14602 Hexapeptide repeat of succinyl-transferase GJQ55_03890 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle GJQ55_03895 PF03960 ArsC family GJQ55_03910 PF07664 Ferrous iron transport protein B C terminus GJQ55_03910 PF17910 FeoB cytosolic helical domain GJQ55_03910 PF02421 Ferrous iron transport protein B GJQ55_03910 PF07670 Nucleoside recognition GJQ55_03915 PF04023 FeoA domain GJQ55_03915 PF17910 FeoB cytosolic helical domain GJQ55_03915 PF02421 Ferrous iron transport protein B GJQ55_03915 PF07670 Nucleoside recognition GJQ55_03915 PF07664 Ferrous iron transport protein B C terminus GJQ55_03925 PF17876 Cold shock domain GJQ55_03925 PF08206 Ribonuclease B OB domain GJQ55_03925 PF00773 RNB domain GJQ55_03925 PF00575 S1 RNA binding domain GJQ55_03930 PF09423 PhoD-like phosphatase GJQ55_03930 PF16655 PhoD-like phosphatase, N-terminal domain GJQ55_03940 PF12706 Beta-lactamase superfamily domain GJQ55_03945 PF01625 Peptide methionine sulfoxide reductase GJQ55_03950 PF13614 AAA domain GJQ55_03955 PF01026 TatD related DNase GJQ55_03965 PF07044 Protein of unknown function (DUF1329) GJQ55_03970 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GJQ55_03970 PF01464 Transglycosylase SLT domain GJQ55_03990 PF00216 Bacterial DNA-binding protein GJQ55_04005 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GJQ55_04015 PF01050 Mannose-6-phosphate isomerase GJQ55_04015 PF00483 Nucleotidyl transferase GJQ55_04020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJQ55_04020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJQ55_04020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJQ55_04020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJQ55_04030 PF00534 Glycosyl transferases group 1 GJQ55_04030 PF13439 Glycosyltransferase Family 4 GJQ55_04050 PF16363 GDP-mannose 4,6 dehydratase GJQ55_04055 PF16363 GDP-mannose 4,6 dehydratase GJQ55_04060 PF00534 Glycosyl transferases group 1 GJQ55_04060 PF00862 Sucrose synthase GJQ55_04090 PF00483 Nucleotidyl transferase GJQ55_04095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GJQ55_04095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GJQ55_04095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GJQ55_04120 PF00535 Glycosyl transferase family 2 GJQ55_04120 PF01501 Glycosyl transferase family 8 GJQ55_04145 PF00535 Glycosyl transferase family 2 GJQ55_04150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GJQ55_04150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GJQ55_04150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GJQ55_04155 PF01609 Transposase DDE domain GJQ55_04155 PF05598 Transposase domain (DUF772) GJQ55_04165 PF01370 NAD dependent epimerase/dehydratase family GJQ55_04170 PF02397 Bacterial sugar transferase GJQ55_04190 PF00005 ABC transporter GJQ55_04220 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_04225 PF03466 LysR substrate binding domain GJQ55_04235 PF02678 Pirin GJQ55_04235 PF17954 Quercetinase C-terminal cupin domain GJQ55_04245 PF01842 ACT domain GJQ55_04245 PF00742 Homoserine dehydrogenase GJQ55_04245 PF03447 Homoserine dehydrogenase, NAD binding domain GJQ55_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_04250 PF03466 LysR substrate binding domain GJQ55_04255 PF01263 Aldose 1-epimerase GJQ55_04265 PF00692 dUTPase GJQ55_04280 PF01734 Patatin-like phospholipase GJQ55_04285 PF05175 Methyltransferase small domain GJQ55_04290 PF01264 Chorismate synthase GJQ55_04295 PF12832 MFS_1 like family GJQ55_04310 PF00561 alpha/beta hydrolase fold GJQ55_04310 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus GJQ55_04340 PF14659 Phage integrase, N-terminal SAM-like domain GJQ55_04340 PF00589 Phage integrase family GJQ55_04350 PF13411 MerR HTH family regulatory protein GJQ55_04360 PF01252 Signal peptidase (SPase) II GJQ55_04370 PF00394 Multicopper oxidase GJQ55_04370 PF07732 Multicopper oxidase GJQ55_04370 PF07731 Multicopper oxidase GJQ55_04375 PF05275 Copper resistance protein B precursor (CopB) GJQ55_04395 PF04945 YHS domain GJQ55_04400 PF00072 Response regulator receiver domain GJQ55_04400 PF00486 Transcriptional regulatory protein, C terminal GJQ55_04405 PF00672 HAMP domain GJQ55_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_04405 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_04410 PF00072 Response regulator receiver domain GJQ55_04410 PF00486 Transcriptional regulatory protein, C terminal GJQ55_04435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJQ55_04440 PF00873 AcrB/AcrD/AcrF family GJQ55_04465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJQ55_04465 PF00529 HlyD membrane-fusion protein of T1SS GJQ55_04465 PF00529 HlyD membrane-fusion protein of T1SS GJQ55_04465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJQ55_04470 PF00873 AcrB/AcrD/AcrF family GJQ55_04475 PF00403 Heavy-metal-associated domain GJQ55_04500 PF00970 Oxidoreductase FAD-binding domain GJQ55_04500 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_04500 PF00175 Oxidoreductase NAD-binding domain GJQ55_04560 PF00141 Peroxidase GJQ55_04570 PF01804 Penicillin amidase GJQ55_04575 PF00106 short chain dehydrogenase GJQ55_04585 PF01068 ATP dependent DNA ligase domain GJQ55_04585 PF14743 DNA ligase OB-like domain GJQ55_04590 PF17768 RecJ OB domain GJQ55_04590 PF02272 DHHA1 domain GJQ55_04590 PF01368 DHH family GJQ55_04600 PF00873 AcrB/AcrD/AcrF family GJQ55_04605 PF00529 HlyD membrane-fusion protein of T1SS GJQ55_04605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJQ55_04625 PF01883 Iron-sulfur cluster assembly protein GJQ55_04630 PF01521 Iron-sulphur cluster biosynthesis GJQ55_04635 PF00266 Aminotransferase class-V GJQ55_04640 PF01458 Uncharacterized protein family (UPF0051) GJQ55_04645 PF00005 ABC transporter GJQ55_04650 PF01458 Uncharacterized protein family (UPF0051) GJQ55_04665 PF00899 ThiF family GJQ55_04670 PF04245 37-kD nucleoid-associated bacterial protein GJQ55_04675 PF00156 Phosphoribosyl transferase domain GJQ55_04680 PF00860 Permease family GJQ55_04690 PF00255 Glutathione peroxidase GJQ55_04695 PF02333 Phytase GJQ55_04730 PF03358 NADPH-dependent FMN reductase GJQ55_04735 PF03960 ArsC family GJQ55_04740 PF03631 Virulence factor BrkB GJQ55_04755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJQ55_04755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJQ55_04755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJQ55_04755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJQ55_04760 PF02719 Polysaccharide biosynthesis protein GJQ55_04765 PF06062 Uncharacterised protein family (UPF0231) GJQ55_04770 PF00929 Exonuclease GJQ55_04775 PF01979 Amidohydrolase family GJQ55_04780 PF00691 OmpA family GJQ55_04785 PF00764 Arginosuccinate synthase GJQ55_04790 PF01863 Protein of unknown function DUF45 GJQ55_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_04795 PF03466 LysR substrate binding domain GJQ55_04800 PF00970 Oxidoreductase FAD-binding domain GJQ55_04800 PF00175 Oxidoreductase NAD-binding domain GJQ55_04815 PF00672 HAMP domain GJQ55_04815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_04835 PF00106 short chain dehydrogenase GJQ55_04840 PF00675 Insulinase (Peptidase family M16) GJQ55_04840 PF05193 Peptidase M16 inactive domain GJQ55_04840 PF16187 Middle or third domain of peptidase_M16 GJQ55_04850 PF00072 Response regulator receiver domain GJQ55_04850 PF00486 Transcriptional regulatory protein, C terminal GJQ55_04875 PF01545 Cation efflux family GJQ55_04875 PF16916 Dimerisation domain of Zinc Transporter GJQ55_04885 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_04885 PF00360 Phytochrome region GJQ55_04885 PF01590 GAF domain GJQ55_04885 PF00563 EAL domain GJQ55_04890 PF01553 Acyltransferase GJQ55_04895 PF01515 Phosphate acetyl/butaryl transferase GJQ55_04895 PF07085 DRTGG domain GJQ55_04900 PF00871 Acetokinase family GJQ55_04910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GJQ55_04935 PF06969 HemN C-terminal domain GJQ55_04935 PF04055 Radical SAM superfamily GJQ55_04940 PF00521 DNA gyrase/topoisomerase IV, subunit A GJQ55_04940 PF03989 DNA gyrase C-terminal domain, beta-propeller GJQ55_04950 PF00266 Aminotransferase class-V GJQ55_04955 PF01842 ACT domain GJQ55_04955 PF00800 Prephenate dehydratase GJQ55_04955 PF01817 Chorismate mutase type II GJQ55_04960 PF00155 Aminotransferase class I and II GJQ55_04965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GJQ55_04970 PF02224 Cytidylate kinase GJQ55_04975 PF00575 S1 RNA binding domain GJQ55_04985 PF00551 Formyl transferase GJQ55_04990 PF02769 AIR synthase related protein, C-terminal domain GJQ55_04990 PF00586 AIR synthase related protein, N-terminal domain GJQ55_05000 PF00308 Bacterial dnaA protein GJQ55_05005 PF00155 Aminotransferase class I and II GJQ55_05010 PF04851 Type III restriction enzyme, res subunit GJQ55_05010 PF02151 UvrB/uvrC motif GJQ55_05010 PF12344 Ultra-violet resistance protein B GJQ55_05010 PF17757 UvrB interaction domain GJQ55_05010 PF00271 Helicase conserved C-terminal domain GJQ55_05025 PF02036 SCP-2 sterol transfer family GJQ55_05030 PF01136 Peptidase family U32 GJQ55_05035 PF01136 Peptidase family U32 GJQ55_05040 PF08859 DGC domain GJQ55_05045 PF00034 Cytochrome c GJQ55_05055 PF00510 Cytochrome c oxidase subunit III GJQ55_05070 PF00115 Cytochrome C and Quinol oxidase polypeptide I GJQ55_05075 PF00034 Cytochrome c GJQ55_05080 PF08406 CbbQ/NirQ/NorQ C-terminal GJQ55_05080 PF07728 AAA domain (dynein-related subfamily) GJQ55_05085 PF07715 TonB-dependent Receptor Plug Domain GJQ55_05085 PF00593 TonB dependent receptor GJQ55_05090 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GJQ55_05110 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GJQ55_05110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_05110 PF07730 Histidine kinase GJQ55_05110 PF00672 HAMP domain GJQ55_05115 PF00384 Molybdopterin oxidoreductase GJQ55_05115 PF01568 Molydopterin dinucleotide binding domain GJQ55_05115 PF14710 Respiratory nitrate reductase alpha N-terminal GJQ55_05120 PF13247 4Fe-4S dicluster domain GJQ55_05120 PF14711 Respiratory nitrate reductase beta C-terminal GJQ55_05125 PF02613 Nitrate reductase delta subunit GJQ55_05130 PF02665 Nitrate reductase gamma subunit GJQ55_05135 PF00639 PPIC-type PPIASE domain GJQ55_05135 PF09312 SurA N-terminal domain GJQ55_05145 PF07690 Major Facilitator Superfamily GJQ55_05155 PF07690 Major Facilitator Superfamily GJQ55_05180 PF02391 MoaE protein GJQ55_05185 PF02597 ThiS family GJQ55_05190 PF01967 MoaC family GJQ55_05195 PF00994 Probable molybdopterin binding domain GJQ55_05200 PF12804 MobA-like NTP transferase domain GJQ55_05205 PF06463 Molybdenum Cofactor Synthesis C GJQ55_05205 PF04055 Radical SAM superfamily GJQ55_05210 PF00196 Bacterial regulatory proteins, luxR family GJQ55_05210 PF00072 Response regulator receiver domain GJQ55_05215 PF03454 MoeA C-terminal region (domain IV) GJQ55_05215 PF03453 MoeA N-terminal region (domain I and II) GJQ55_05215 PF00994 Probable molybdopterin binding domain GJQ55_05220 PF00899 ThiF family GJQ55_05225 PF02954 Bacterial regulatory protein, Fis family GJQ55_05225 PF00158 Sigma-54 interaction domain GJQ55_05230 PF01814 Hemerythrin HHE cation binding domain GJQ55_05230 PF04405 Domain of Unknown function (DUF542) GJQ55_05235 PF06450 Bacterial Na+/H+ antiporter B (NhaB) GJQ55_05240 PF00994 Probable molybdopterin binding domain GJQ55_05245 PF01965 DJ-1/PfpI family GJQ55_05250 PF04116 Fatty acid hydroxylase superfamily GJQ55_05255 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJQ55_05255 PF12833 Helix-turn-helix domain GJQ55_05260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GJQ55_05260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJQ55_05260 PF02824 TGS domain GJQ55_05260 PF03129 Anticodon binding domain GJQ55_05265 PF00707 Translation initiation factor IF-3, C-terminal domain GJQ55_05265 PF05198 Translation initiation factor IF-3, N-terminal domain GJQ55_05270 PF01632 Ribosomal protein L35 GJQ55_05275 PF00453 Ribosomal protein L20 GJQ55_05280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GJQ55_05280 PF01409 tRNA synthetases class II core domain (F) GJQ55_05285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GJQ55_05285 PF01588 Putative tRNA binding domain GJQ55_05285 PF03484 tRNA synthetase B5 domain GJQ55_05285 PF03483 B3/4 domain GJQ55_05285 PF03147 Ferredoxin-fold anticodon binding domain GJQ55_05290 PF00216 Bacterial DNA-binding protein GJQ55_05305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_05305 PF08447 PAS fold GJQ55_05305 PF13426 PAS domain GJQ55_05310 PF12704 MacB-like periplasmic core domain GJQ55_05310 PF02687 FtsX-like permease family GJQ55_05310 PF00005 ABC transporter GJQ55_05315 PF00005 ABC transporter GJQ55_05315 PF12704 MacB-like periplasmic core domain GJQ55_05315 PF02687 FtsX-like permease family GJQ55_05320 PF00005 ABC transporter GJQ55_05320 PF02687 FtsX-like permease family GJQ55_05320 PF12704 MacB-like periplasmic core domain GJQ55_05330 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) GJQ55_05335 PF02222 ATP-grasp domain GJQ55_05335 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GJQ55_05340 PF00731 AIR carboxylase GJQ55_05350 PF13193 AMP-binding enzyme C-terminal domain GJQ55_05350 PF00501 AMP-binding enzyme GJQ55_05355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_05355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_05355 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_05360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_05360 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_05360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_05370 PF03883 Peroxide stress protein YaaA GJQ55_05385 PF08386 TAP-like protein GJQ55_05385 PF00561 alpha/beta hydrolase fold GJQ55_05390 PF08411 Exonuclease C-terminal GJQ55_05390 PF00929 Exonuclease GJQ55_05400 PF13194 Domain of unknown function (DUF4010) GJQ55_05420 PF00924 Mechanosensitive ion channel GJQ55_05425 PF01925 Sulfite exporter TauE/SafE GJQ55_05430 PF00271 Helicase conserved C-terminal domain GJQ55_05430 PF00270 DEAD/DEAH box helicase GJQ55_05430 PF03880 DbpA RNA binding domain GJQ55_05435 PF05958 tRNA (Uracil-5-)-methyltransferase GJQ55_05450 PF01966 HD domain GJQ55_05450 PF11871 Domain of unknown function (DUF3391) GJQ55_05460 PF04225 Opacity-associated protein A LysM-like domain GJQ55_05460 PF01551 Peptidase family M23 GJQ55_05465 PF02601 Exonuclease VII, large subunit GJQ55_05465 PF02601 Exonuclease VII, large subunit GJQ55_05465 PF13742 OB-fold nucleic acid binding domain GJQ55_05465 PF13742 OB-fold nucleic acid binding domain GJQ55_05485 PF00571 CBS domain GJQ55_05485 PF00478 IMP dehydrogenase / GMP reductase domain GJQ55_05490 PF00117 Glutamine amidotransferase class-I GJQ55_05490 PF02540 NAD synthase GJQ55_05490 PF00958 GMP synthase C terminal domain GJQ55_05495 PF01381 Helix-turn-helix GJQ55_05500 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB GJQ55_05505 PF00892 EamA-like transporter family GJQ55_05520 PF00313 'Cold-shock' DNA-binding domain GJQ55_05530 PF03435 Saccharopine dehydrogenase NADP binding domain GJQ55_05540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_05540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GJQ55_05545 PF07152 YaeQ protein GJQ55_05550 PF17773 UPF0176 acylphosphatase like domain GJQ55_05550 PF00581 Rhodanese-like domain GJQ55_05565 PF02508 Rnf-Nqr subunit, membrane protein GJQ55_05570 PF04205 FMN-binding domain GJQ55_05575 PF03116 NQR2, RnfD, RnfE family GJQ55_05580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GJQ55_05580 PF12838 4Fe-4S dicluster domain GJQ55_05580 PF10531 SLBB domain GJQ55_05580 PF13375 RnfC Barrel sandwich hybrid domain GJQ55_05585 PF04060 Putative Fe-S cluster GJQ55_05590 PF02508 Rnf-Nqr subunit, membrane protein GJQ55_05600 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_05605 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_05605 PF12911 N-terminal TM domain of oligopeptide transport permease C GJQ55_05610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GJQ55_05610 PF00005 ABC transporter GJQ55_05620 PF10609 NUBPL iron-transfer P-loop NTPase GJQ55_05625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJQ55_05625 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_05675 PF00144 Beta-lactamase GJQ55_05680 PF02384 N-6 DNA Methylase GJQ55_05685 PF01420 Type I restriction modification DNA specificity domain GJQ55_05695 PF13784 Fic/DOC family N-terminal GJQ55_05695 PF02661 Fic/DOC family GJQ55_05700 PF11867 Domain of unknown function (DUF3387) GJQ55_05700 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GJQ55_05700 PF18766 SWI2/SNF2 ATPase GJQ55_05705 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GJQ55_05705 PF01464 Transglycosylase SLT domain GJQ55_05710 PF03129 Anticodon binding domain GJQ55_05710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJQ55_05710 PF04073 Aminoacyl-tRNA editing domain GJQ55_05720 PF03352 Methyladenine glycosylase GJQ55_05745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GJQ55_05745 PF10414 Sirohaem synthase dimerisation region GJQ55_05745 PF14824 Sirohaem biosynthesis protein central GJQ55_05750 PF04324 BFD-like [2Fe-2S] binding domain GJQ55_05750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GJQ55_05750 PF00384 Molybdopterin oxidoreductase GJQ55_05750 PF01568 Molydopterin dinucleotide binding domain GJQ55_05755 PF04324 BFD-like [2Fe-2S] binding domain GJQ55_05755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GJQ55_05755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GJQ55_05755 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_05755 PF18267 Rubredoxin NAD+ reductase C-terminal domain GJQ55_05760 PF13806 Rieske-like [2Fe-2S] domain GJQ55_05765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GJQ55_05765 PF04324 BFD-like [2Fe-2S] binding domain GJQ55_05765 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_05765 PF18267 Rubredoxin NAD+ reductase C-terminal domain GJQ55_05780 PF03861 ANTAR domain GJQ55_05780 PF08376 Nitrate and nitrite sensing GJQ55_05785 PF00005 ABC transporter GJQ55_05790 PF00528 Binding-protein-dependent transport system inner membrane component GJQ55_05800 PF08497 Radical SAM N-terminal GJQ55_05800 PF11842 Domain of unknown function (DUF3362) GJQ55_05800 PF04055 Radical SAM superfamily GJQ55_05830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GJQ55_05830 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GJQ55_05835 PF17946 RecC C-terminal domain GJQ55_05840 PF12705 PD-(D/E)XK nuclease superfamily GJQ55_05840 PF00580 UvrD/REP helicase N-terminal domain GJQ55_05840 PF13361 UvrD-like helicase C-terminal domain GJQ55_05845 PF13538 UvrD-like helicase C-terminal domain GJQ55_05865 PF18381 YcaO cyclodehydratase C-terminal domain GJQ55_05865 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GJQ55_05870 PF00289 Biotin carboxylase, N-terminal domain GJQ55_05870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJQ55_05870 PF02785 Biotin carboxylase C-terminal domain GJQ55_05875 PF02801 Beta-ketoacyl synthase, C-terminal domain GJQ55_05875 PF00109 Beta-ketoacyl synthase, N-terminal domain GJQ55_05885 PF01266 FAD dependent oxidoreductase GJQ55_05885 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GJQ55_05890 PF00563 EAL domain GJQ55_05890 PF08668 HDOD domain GJQ55_05895 PF01584 CheW-like domain GJQ55_05895 PF00072 Response regulator receiver domain GJQ55_05900 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_05900 PF03473 MOSC domain GJQ55_05900 PF03476 MOSC N-terminal beta barrel domain GJQ55_05905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GJQ55_05905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GJQ55_05910 PF00285 Citrate synthase, C-terminal domain GJQ55_05915 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GJQ55_05920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GJQ55_05925 PF02910 Fumarate reductase flavoprotein C-term GJQ55_05925 PF00890 FAD binding domain GJQ55_05930 PF13085 2Fe-2S iron-sulfur cluster binding domain GJQ55_05935 PF00676 Dehydrogenase E1 component GJQ55_05935 PF16078 2-oxoglutarate dehydrogenase N-terminus GJQ55_05935 PF02779 Transketolase, pyrimidine binding domain GJQ55_05935 PF16870 2-oxoglutarate dehydrogenase C-terminal GJQ55_05940 PF02817 e3 binding domain GJQ55_05940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GJQ55_05940 PF00364 Biotin-requiring enzyme GJQ55_05945 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_05945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJQ55_05950 PF00549 CoA-ligase GJQ55_05950 PF08442 ATP-grasp domain GJQ55_05955 PF02629 CoA binding domain GJQ55_05955 PF00549 CoA-ligase GJQ55_05960 PF16177 Acetyl-coenzyme A synthetase N-terminus GJQ55_05960 PF00501 AMP-binding enzyme GJQ55_05960 PF13193 AMP-binding enzyme C-terminal domain GJQ55_05970 PF00005 ABC transporter GJQ55_05975 PF01061 ABC-2 type transporter GJQ55_05980 PF14489 QueF-like protein GJQ55_05980 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GJQ55_05985 PF00072 Response regulator receiver domain GJQ55_05985 PF00211 Adenylate and Guanylate cyclase catalytic domain GJQ55_06000 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJQ55_06025 PF02348 Cytidylyltransferase GJQ55_06030 PF13673 Acetyltransferase (GNAT) domain GJQ55_06035 PF08007 Cupin superfamily protein GJQ55_06040 PF08328 Adenylosuccinate lyase C-terminal GJQ55_06040 PF00206 Lyase GJQ55_06055 PF01274 Malate synthase GJQ55_06070 PF01471 Putative peptidoglycan binding domain GJQ55_06070 PF13401 AAA domain GJQ55_06080 PF06733 DEAD_2 GJQ55_06080 PF13307 Helicase C-terminal domain GJQ55_06095 PF02687 FtsX-like permease family GJQ55_06095 PF12704 MacB-like periplasmic core domain GJQ55_06100 PF00005 ABC transporter GJQ55_06110 PF03772 Competence protein GJQ55_06110 PF00753 Metallo-beta-lactamase superfamily GJQ55_06115 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_06120 PF02472 Biopolymer transport protein ExbD/TolR GJQ55_06125 PF00664 ABC transporter transmembrane region GJQ55_06125 PF00005 ABC transporter GJQ55_06130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GJQ55_06135 PF03966 Trm112p-like protein GJQ55_06140 PF01451 Low molecular weight phosphotyrosine protein phosphatase GJQ55_06145 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GJQ55_06145 PF01565 FAD binding domain GJQ55_06150 PF00149 Calcineurin-like phosphoesterase GJQ55_06155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GJQ55_06160 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GJQ55_06160 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJQ55_06165 PF01406 tRNA synthetases class I (C) catalytic domain GJQ55_06165 PF09190 DALR domain GJQ55_06170 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GJQ55_06170 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GJQ55_06195 PF05697 Bacterial trigger factor protein (TF) GJQ55_06195 PF05698 Bacterial trigger factor protein (TF) C-terminus GJQ55_06195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_06200 PF00574 Clp protease GJQ55_06205 PF07724 AAA domain (Cdc48 subfamily) GJQ55_06205 PF10431 C-terminal, D2-small domain, of ClpB protein GJQ55_06205 PF06689 ClpX C4-type zinc finger GJQ55_06210 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_06210 PF02190 ATP-dependent protease La (LON) substrate-binding domain GJQ55_06210 PF05362 Lon protease (S16) C-terminal proteolytic domain GJQ55_06215 PF00216 Bacterial DNA-binding protein GJQ55_06230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GJQ55_06235 PF01476 LysM domain GJQ55_06235 PF01464 Transglycosylase SLT domain GJQ55_06245 PF00075 RNase H GJQ55_06250 PF00929 Exonuclease GJQ55_06270 PF01022 Bacterial regulatory protein, arsR family GJQ55_06275 PF02424 ApbE family GJQ55_06285 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_06285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJQ55_06300 PF00923 Transaldolase/Fructose-6-phosphate aldolase GJQ55_06305 PF01207 Dihydrouridine synthase (Dus) GJQ55_06310 PF04356 Protein of unknown function (DUF489) GJQ55_06320 PF00293 NUDIX domain GJQ55_06325 PF00849 RNA pseudouridylate synthase GJQ55_06330 PF03971 Monomeric isocitrate dehydrogenase GJQ55_06335 PF00313 'Cold-shock' DNA-binding domain GJQ55_06340 PF02617 ATP-dependent Clp protease adaptor protein ClpS GJQ55_06345 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_06345 PF07724 AAA domain (Cdc48 subfamily) GJQ55_06345 PF17871 AAA lid domain GJQ55_06345 PF02861 Clp amino terminal domain, pathogenicity island component GJQ55_06345 PF10431 C-terminal, D2-small domain, of ClpB protein GJQ55_06350 PF01176 Translation initiation factor 1A / IF-1 GJQ55_06355 PF04377 Arginine-tRNA-protein transferase, C terminus GJQ55_06355 PF04376 Arginine-tRNA-protein transferase, N terminus GJQ55_06360 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GJQ55_06365 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GJQ55_06365 PF17854 FtsK alpha domain GJQ55_06365 PF09397 Ftsk gamma domain GJQ55_06365 PF01580 FtsK/SpoIIIE family GJQ55_06370 PF03548 Outer membrane lipoprotein carrier protein LolA GJQ55_06375 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_06375 PF12002 MgsA AAA+ ATPase C terminal GJQ55_06375 PF16193 AAA C-terminal domain GJQ55_06380 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GJQ55_06385 PF02403 Seryl-tRNA synthetase N-terminal domain GJQ55_06385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJQ55_06390 PF10414 Sirohaem synthase dimerisation region GJQ55_06390 PF14824 Sirohaem biosynthesis protein central GJQ55_06390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GJQ55_06395 PF02743 Cache domain GJQ55_06395 PF00672 HAMP domain GJQ55_06395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_06400 PF02885 Glycosyl transferase family, helical bundle domain GJQ55_06400 PF00591 Glycosyl transferase family, a/b domain GJQ55_06405 PF04358 DsrC like protein GJQ55_06415 PF02635 DsrE/DsrF-like family GJQ55_06420 PF02635 DsrE/DsrF-like family GJQ55_06430 PF00850 Histone deacetylase domain GJQ55_06435 PF00583 Acetyltransferase (GNAT) family GJQ55_06435 PF13380 CoA binding domain GJQ55_06435 PF13607 Succinyl-CoA ligase like flavodoxin domain GJQ55_06440 PF00196 Bacterial regulatory proteins, luxR family GJQ55_06440 PF00072 Response regulator receiver domain GJQ55_06445 PF01541 GIY-YIG catalytic domain GJQ55_06445 PF02151 UvrB/uvrC motif GJQ55_06445 PF08459 UvrC Helix-hairpin-helix N-terminal GJQ55_06450 PF01066 CDP-alcohol phosphatidyltransferase GJQ55_06480 PF01507 Phosphoadenosine phosphosulfate reductase family GJQ55_06490 PF00425 chorismate binding enzyme GJQ55_06490 PF04715 Anthranilate synthase component I, N terminal region GJQ55_06525 PF03618 Kinase/pyrophosphorylase GJQ55_06530 PF02896 PEP-utilising enzyme, TIM barrel domain GJQ55_06530 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GJQ55_06530 PF00391 PEP-utilising enzyme, mobile domain GJQ55_06540 PF03737 Aldolase/RraA GJQ55_06545 PF00392 Bacterial regulatory proteins, gntR family GJQ55_06545 PF07729 FCD domain GJQ55_06555 PF00285 Citrate synthase, C-terminal domain GJQ55_06560 PF00330 Aconitase family (aconitate hydratase) GJQ55_06560 PF00694 Aconitase C-terminal domain GJQ55_06570 PF04303 PrpF protein GJQ55_06580 PF12111 Polyribonucleotide phosphorylase C terminal GJQ55_06580 PF10150 Ribonuclease E/G family GJQ55_06580 PF00575 S1 RNA binding domain GJQ55_06590 PF00849 RNA pseudouridylate synthase GJQ55_06590 PF01479 S4 domain GJQ55_06595 PF13419 Haloacid dehalogenase-like hydrolase GJQ55_06600 PF01343 Peptidase family S49 GJQ55_06605 PF02620 Large ribosomal RNA subunit accumulation protein YceD GJQ55_06610 PF01783 Ribosomal L32p protein family GJQ55_06615 PF02504 Fatty acid synthesis protein GJQ55_06620 PF00698 Acyl transferase domain GJQ55_06630 PF00550 Phosphopantetheine attachment site GJQ55_06635 PF00109 Beta-ketoacyl synthase, N-terminal domain GJQ55_06635 PF02801 Beta-ketoacyl synthase, C-terminal domain GJQ55_06640 PF01063 Amino-transferase class IV GJQ55_06645 PF02618 YceG-like family GJQ55_06650 PF02223 Thymidylate kinase GJQ55_06655 PF09115 DNA polymerase III, delta subunit, C terminal GJQ55_06665 PF00266 Aminotransferase class-V GJQ55_06670 PF05193 Peptidase M16 inactive domain GJQ55_06670 PF08367 Peptidase M16C associated GJQ55_06670 PF00675 Insulinase (Peptidase family M16) GJQ55_06680 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_06685 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_06690 PF02472 Biopolymer transport protein ExbD/TolR GJQ55_06695 PF03544 Gram-negative bacterial TonB protein C-terminal GJQ55_06705 PF03372 Endonuclease/Exonuclease/phosphatase family GJQ55_06710 PF07715 TonB-dependent Receptor Plug Domain GJQ55_06710 PF00593 TonB dependent receptor GJQ55_06715 PF02568 Thiamine biosynthesis protein (ThiI) GJQ55_06715 PF02926 THUMP domain GJQ55_06720 PF00589 Phage integrase family GJQ55_06720 PF02899 Phage integrase, N-terminal SAM-like domain GJQ55_06725 PF12146 Serine aminopeptidase, S33 GJQ55_06730 PF00440 Bacterial regulatory proteins, tetR family GJQ55_06740 PF02583 Metal-sensitive transcriptional repressor GJQ55_06745 PF01545 Cation efflux family GJQ55_06755 PF18337 RapA N-terminal Tudor like domain GJQ55_06755 PF00271 Helicase conserved C-terminal domain GJQ55_06755 PF00176 SNF2 family N-terminal domain GJQ55_06755 PF12137 RNA polymerase recycling family C-terminal GJQ55_06755 PF18339 RapA N-terminal Tudor like domain 1 GJQ55_06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_06760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJQ55_06775 PF03934 Type II secretion system (T2SS), protein K GJQ55_06780 PF07963 Prokaryotic N-terminal methylation motif GJQ55_06780 PF11612 Type II secretion system (T2SS), protein J GJQ55_06785 PF07963 Prokaryotic N-terminal methylation motif GJQ55_06785 PF02501 Type II secretion system (T2SS), protein I GJQ55_06790 PF12019 Type II transport protein GspH GJQ55_06790 PF07963 Prokaryotic N-terminal methylation motif GJQ55_06795 PF07963 Prokaryotic N-terminal methylation motif GJQ55_06795 PF08334 Type II secretion system (T2SS), protein G GJQ55_06800 PF00482 Type II secretion system (T2SS), protein F GJQ55_06805 PF00437 Type II/IV secretion system protein GJQ55_06810 PF01012 Electron transfer flavoprotein domain GJQ55_06810 PF00766 Electron transfer flavoprotein FAD-binding domain GJQ55_06815 PF01012 Electron transfer flavoprotein domain GJQ55_06825 PF01521 Iron-sulphur cluster biosynthesis GJQ55_06825 PF01106 NifU-like domain GJQ55_06830 PF02607 B12 binding domain GJQ55_06830 PF02310 B12 binding domain GJQ55_06830 PF02965 Vitamin B12 dependent methionine synthase, activation domain GJQ55_06830 PF00809 Pterin binding enzyme GJQ55_06830 PF02574 Homocysteine S-methyltransferase GJQ55_06835 PF01554 MatE GJQ55_06840 PF03009 Glycerophosphoryl diester phosphodiesterase family GJQ55_06845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GJQ55_06845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GJQ55_06855 PF01343 Peptidase family S49 GJQ55_06855 PF08496 Peptidase family S49 N-terminal GJQ55_06865 PF04333 MlaA lipoprotein GJQ55_06870 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold GJQ55_06870 PF11898 Domain of unknown function (DUF3418) GJQ55_06870 PF04408 Helicase associated domain (HA2) GJQ55_06870 PF00270 DEAD/DEAH box helicase GJQ55_06870 PF00271 Helicase conserved C-terminal domain GJQ55_06875 PF00501 AMP-binding enzyme GJQ55_06875 PF13193 AMP-binding enzyme C-terminal domain GJQ55_06880 PF12146 Serine aminopeptidase, S33 GJQ55_06885 PF01575 MaoC like domain GJQ55_06945 PF01434 Peptidase family M41 GJQ55_06945 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_06945 PF17862 AAA+ lid domain GJQ55_06965 PF03692 Putative zinc- or iron-chelating domain GJQ55_06970 PF05166 YcgL domain GJQ55_06975 PF01612 3'-5' exonuclease GJQ55_06975 PF00570 HRDC domain GJQ55_06980 PF02132 RecR protein GJQ55_06980 PF13662 Toprim domain GJQ55_06985 PF02575 YbaB/EbfC DNA-binding family GJQ55_06990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GJQ55_06990 PF12170 DNA polymerase III tau subunit V interacting with alpha GJQ55_06990 PF12169 DNA polymerase III subunits gamma and tau domain III GJQ55_07005 PF13654 AAA domain GJQ55_07005 PF05362 Lon protease (S16) C-terminal proteolytic domain GJQ55_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_07010 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_07010 PF01627 Hpt domain GJQ55_07010 PF00072 Response regulator receiver domain GJQ55_07035 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GJQ55_07045 PF01367 5'-3' exonuclease, C-terminal SAM fold GJQ55_07045 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GJQ55_07050 PF00664 ABC transporter transmembrane region GJQ55_07050 PF00005 ABC transporter GJQ55_07065 PF00271 Helicase conserved C-terminal domain GJQ55_07065 PF00270 DEAD/DEAH box helicase GJQ55_07070 PF01554 MatE GJQ55_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_07075 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GJQ55_07080 PF00248 Aldo/keto reductase family GJQ55_07085 PF00085 Thioredoxin GJQ55_07095 PF11992 Domain of unknown function (DUF3488) GJQ55_07095 PF13559 Domain of unknown function (DUF4129) GJQ55_07095 PF01841 Transglutaminase-like superfamily GJQ55_07105 PF07726 ATPase family associated with various cellular activities (AAA) GJQ55_07105 PF17863 AAA lid domain GJQ55_07110 PF01053 Cys/Met metabolism PLP-dependent enzyme GJQ55_07115 PF00156 Phosphoribosyl transferase domain GJQ55_07120 PF02674 Colicin V production protein GJQ55_07130 PF02875 Mur ligase family, glutamate ligase domain GJQ55_07130 PF08245 Mur ligase middle domain GJQ55_07135 PF00290 Tryptophan synthase alpha chain GJQ55_07140 PF00291 Pyridoxal-phosphate dependent enzyme GJQ55_07145 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GJQ55_07150 PF01416 tRNA pseudouridine synthase GJQ55_07160 PF01118 Semialdehyde dehydrogenase, NAD binding domain GJQ55_07160 PF02774 Semialdehyde dehydrogenase, dimerisation domain GJQ55_07165 PF00180 Isocitrate/isopropylmalate dehydrogenase GJQ55_07170 PF00694 Aconitase C-terminal domain GJQ55_07175 PF00330 Aconitase family (aconitate hydratase) GJQ55_07180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_07185 PF00582 Universal stress protein family GJQ55_07190 PF01515 Phosphate acetyl/butaryl transferase GJQ55_07205 PF05175 Methyltransferase small domain GJQ55_07220 PF01136 Peptidase family U32 GJQ55_07220 PF16325 Peptidase family U32 C-terminal domain GJQ55_07225 PF00849 RNA pseudouridylate synthase GJQ55_07240 PF00300 Histidine phosphatase superfamily (branch 1) GJQ55_07250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GJQ55_07250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GJQ55_07260 PF00072 Response regulator receiver domain GJQ55_07260 PF00486 Transcriptional regulatory protein, C terminal GJQ55_07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_07270 PF03466 LysR substrate binding domain GJQ55_07275 PF00793 DAHP synthetase I family GJQ55_07280 PF03471 Transporter associated domain GJQ55_07280 PF00999 Sodium/hydrogen exchanger family GJQ55_07280 PF02080 TrkA-C domain GJQ55_07285 PF00072 Response regulator receiver domain GJQ55_07285 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_07315 PF00072 Response regulator receiver domain GJQ55_07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_07320 PF01047 MarR family GJQ55_07325 PF00255 Glutathione peroxidase GJQ55_07330 PF01641 SelR domain GJQ55_07335 PF00155 Aminotransferase class I and II GJQ55_07355 PF17845 FbpC C-terminal regulatory nucleotide binding domain GJQ55_07355 PF00005 ABC transporter GJQ55_07360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GJQ55_07360 PF11890 Domain of unknown function (DUF3410) GJQ55_07360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GJQ55_07365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GJQ55_07365 PF00384 Molybdopterin oxidoreductase GJQ55_07365 PF01568 Molydopterin dinucleotide binding domain GJQ55_07370 PF06434 Aconitate hydratase 2 N-terminus GJQ55_07370 PF00330 Aconitase family (aconitate hydratase) GJQ55_07370 PF11791 Aconitate B N-terminal domain GJQ55_07385 PF11638 DnaA N-terminal domain GJQ55_07385 PF00308 Bacterial dnaA protein GJQ55_07385 PF08299 Bacterial dnaA protein helix-turn-helix GJQ55_07390 PF00694 Aconitase C-terminal domain GJQ55_07390 PF00330 Aconitase family (aconitate hydratase) GJQ55_07395 PF11791 Aconitate B N-terminal domain GJQ55_07395 PF00330 Aconitase family (aconitate hydratase) GJQ55_07395 PF06434 Aconitate hydratase 2 N-terminus GJQ55_07400 PF01553 Acyltransferase GJQ55_07405 PF02938 GAD domain GJQ55_07405 PF00152 tRNA synthetases class II (D, K and N) GJQ55_07405 PF01336 OB-fold nucleic acid binding domain GJQ55_07415 PF16123 Hydroxyacylglutathione hydrolase C-terminus GJQ55_07415 PF00753 Metallo-beta-lactamase superfamily GJQ55_07440 PF08443 RimK-like ATP-grasp domain GJQ55_07440 PF18030 RimK PreATP-grasp domain GJQ55_07450 PF00919 Uncharacterized protein family UPF0004 GJQ55_07450 PF04055 Radical SAM superfamily GJQ55_07450 PF18693 TRAM domain GJQ55_07455 PF00849 RNA pseudouridylate synthase GJQ55_07455 PF01479 S4 domain GJQ55_07460 PF00291 Pyridoxal-phosphate dependent enzyme GJQ55_07465 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_07465 PF02190 ATP-dependent protease La (LON) substrate-binding domain GJQ55_07465 PF05362 Lon protease (S16) C-terminal proteolytic domain GJQ55_07470 PF00857 Isochorismatase family GJQ55_07475 PF04261 Dyp-type peroxidase family GJQ55_07480 PF05971 RNA methyltransferase GJQ55_07485 PF01965 DJ-1/PfpI family GJQ55_07485 PF12833 Helix-turn-helix domain GJQ55_07490 PF06167 Glucose-regulated metallo-peptidase M90 GJQ55_07495 PF00109 Beta-ketoacyl synthase, N-terminal domain GJQ55_07495 PF02801 Beta-ketoacyl synthase, C-terminal domain GJQ55_07510 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system GJQ55_07525 PF18766 SWI2/SNF2 ATPase GJQ55_07525 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GJQ55_07525 PF11867 Domain of unknown function (DUF3387) GJQ55_07550 PF12161 HsdM N-terminal domain GJQ55_07550 PF02384 N-6 DNA Methylase GJQ55_07555 PF00175 Oxidoreductase NAD-binding domain GJQ55_07555 PF00258 Flavodoxin GJQ55_07555 PF00667 FAD binding domain GJQ55_07575 PF07715 TonB-dependent Receptor Plug Domain GJQ55_07575 PF00593 TonB dependent receptor GJQ55_07585 PF00115 Cytochrome C and Quinol oxidase polypeptide I GJQ55_07600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GJQ55_07600 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP GJQ55_07605 PF12801 4Fe-4S binding domain GJQ55_07605 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase GJQ55_07605 PF13746 4Fe-4S dicluster domain GJQ55_07615 PF00403 Heavy-metal-associated domain GJQ55_07630 PF00027 Cyclic nucleotide-binding domain GJQ55_07630 PF00325 Bacterial regulatory proteins, crp family GJQ55_07635 PF01171 PP-loop family GJQ55_07645 PF03449 Transcription elongation factor, N-terminal GJQ55_07645 PF01272 Transcription elongation factor, GreA/GreB, C-term GJQ55_07650 PF00226 DnaJ domain GJQ55_07650 PF01556 DnaJ C terminal domain GJQ55_07650 PF00684 DnaJ central domain GJQ55_07670 PF00691 OmpA family GJQ55_07680 PF01722 BolA-like protein GJQ55_07695 PF01926 50S ribosome-binding GTPase GJQ55_07705 PF00753 Metallo-beta-lactamase superfamily GJQ55_07710 PF01022 Bacterial regulatory protein, arsR family GJQ55_07715 PF00916 Sulfate permease family GJQ55_07715 PF01740 STAS domain GJQ55_07740 PF03976 Polyphosphate kinase 2 (PPK2) GJQ55_07745 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_07745 PF07694 5TMR of 5TMR-LYT GJQ55_07750 PF01177 Asp/Glu/Hydantoin racemase GJQ55_07755 PF01227 GTP cyclohydrolase I GJQ55_07760 PF13091 PLD-like domain GJQ55_07760 PF13396 Phospholipase_D-nuclease N-terminal GJQ55_07765 PF03922 OmpW family GJQ55_07775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_07775 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJQ55_07775 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_07775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_07780 PF08803 Putative mono-oxygenase ydhR GJQ55_07785 PF00501 AMP-binding enzyme GJQ55_07785 PF13193 AMP-binding enzyme C-terminal domain GJQ55_07790 PF00487 Fatty acid desaturase GJQ55_07800 PF01717 Cobalamin-independent synthase, Catalytic domain GJQ55_07800 PF08267 Cobalamin-independent synthase, N-terminal domain GJQ55_07820 PF13411 MerR HTH family regulatory protein GJQ55_07825 PF01590 GAF domain GJQ55_07825 PF00563 EAL domain GJQ55_07825 PF00360 Phytochrome region GJQ55_07825 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_07830 PF02222 ATP-grasp domain GJQ55_07840 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_07845 PF00293 NUDIX domain GJQ55_07850 PF01784 NIF3 (NGG1p interacting factor 3) GJQ55_07855 PF02743 Cache domain GJQ55_07855 PF00672 HAMP domain GJQ55_07855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_07860 PF03692 Putative zinc- or iron-chelating domain GJQ55_07875 PF00849 RNA pseudouridylate synthase GJQ55_07885 PF00873 AcrB/AcrD/AcrF family GJQ55_07890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_07890 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_07890 PF02743 Cache domain GJQ55_07895 PF00873 AcrB/AcrD/AcrF family GJQ55_07905 PF02321 Outer membrane efflux protein GJQ55_07910 PF00156 Phosphoribosyl transferase domain GJQ55_07915 PF07687 Peptidase dimerisation domain GJQ55_07915 PF01546 Peptidase family M20/M25/M40 GJQ55_07920 PF13847 Methyltransferase domain GJQ55_07935 PF08264 Anticodon-binding domain of tRNA GJQ55_07935 PF00133 tRNA synthetases class I (I, L, M and V) GJQ55_07935 PF10458 Valyl tRNA synthetase tRNA binding arm GJQ55_07960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GJQ55_08025 PF04101 Glycosyltransferase family 28 C-terminal domain GJQ55_08055 PF13495 Phage integrase, N-terminal SAM-like domain GJQ55_08055 PF00589 Phage integrase family GJQ55_08060 PF10458 Valyl tRNA synthetase tRNA binding arm GJQ55_08060 PF00133 tRNA synthetases class I (I, L, M and V) GJQ55_08060 PF08264 Anticodon-binding domain of tRNA GJQ55_08065 PF00588 SpoU rRNA Methylase family GJQ55_08075 PF00141 Peroxidase GJQ55_08080 PF00893 Small Multidrug Resistance protein GJQ55_08085 PF00255 Glutathione peroxidase GJQ55_08100 PF01027 Inhibitor of apoptosis-promoting Bax1 GJQ55_08110 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GJQ55_08115 PF02355 Protein export membrane protein GJQ55_08115 PF07549 SecD/SecF GG Motif GJQ55_08120 PF07549 SecD/SecF GG Motif GJQ55_08120 PF13721 SecD export protein N-terminal TM region GJQ55_08120 PF02355 Protein export membrane protein GJQ55_08125 PF02699 Preprotein translocase subunit GJQ55_08130 PF01702 Queuine tRNA-ribosyltransferase GJQ55_08135 PF02547 Queuosine biosynthesis protein GJQ55_08160 PF00672 HAMP domain GJQ55_08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_08160 PF17202 Single cache domain 3 GJQ55_08165 PF00563 EAL domain GJQ55_08165 PF01590 GAF domain GJQ55_08165 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_08165 PF00360 Phytochrome region GJQ55_08170 PF00578 AhpC/TSA family GJQ55_08175 PF00106 short chain dehydrogenase GJQ55_08180 PF00753 Metallo-beta-lactamase superfamily GJQ55_08185 PF03969 AFG1-like ATPase GJQ55_08190 PF02129 X-Pro dipeptidyl-peptidase (S15 family) GJQ55_08195 PF01507 Phosphoadenosine phosphosulfate reductase family GJQ55_08200 PF00009 Elongation factor Tu GTP binding domain GJQ55_08210 PF03881 Fructosamine kinase GJQ55_08215 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GJQ55_08215 PF01243 Pyridoxamine 5'-phosphate oxidase GJQ55_08225 PF03739 Lipopolysaccharide export system permease LptF/LptG GJQ55_08230 PF03739 Lipopolysaccharide export system permease LptF/LptG GJQ55_08235 PF00883 Cytosol aminopeptidase family, catalytic domain GJQ55_08235 PF02789 Cytosol aminopeptidase family, N-terminal domain GJQ55_08240 PF00881 Nitroreductase family GJQ55_08245 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_08245 PF00072 Response regulator receiver domain GJQ55_08255 PF00106 short chain dehydrogenase GJQ55_08265 PF00970 Oxidoreductase FAD-binding domain GJQ55_08265 PF00175 Oxidoreductase NAD-binding domain GJQ55_08265 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_08270 PF02508 Rnf-Nqr subunit, membrane protein GJQ55_08275 PF02508 Rnf-Nqr subunit, membrane protein GJQ55_08280 PF04205 FMN-binding domain GJQ55_08285 PF03116 NQR2, RnfD, RnfE family GJQ55_08290 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GJQ55_08290 PF11973 NQRA C-terminal domain GJQ55_08295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GJQ55_08295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GJQ55_08300 PF17757 UvrB interaction domain GJQ55_08300 PF00271 Helicase conserved C-terminal domain GJQ55_08300 PF00270 DEAD/DEAH box helicase GJQ55_08300 PF02559 CarD-like/TRCF domain GJQ55_08300 PF03461 TRCF domain GJQ55_08310 PF01048 Phosphorylase superfamily GJQ55_08315 PF00933 Glycosyl hydrolase family 3 N terminal domain GJQ55_08325 PF00440 Bacterial regulatory proteins, tetR family GJQ55_08330 PF01726 LexA DNA binding domain GJQ55_08330 PF00717 Peptidase S24-like GJQ55_08335 PF03846 Cell division inhibitor SulA GJQ55_08355 PF00183 Hsp90 protein GJQ55_08360 PF02581 Thiamine monophosphate synthase GJQ55_08365 PF05690 Thiazole biosynthesis protein ThiG GJQ55_08375 PF01266 FAD dependent oxidoreductase GJQ55_08380 PF01964 Radical SAM ThiC family GJQ55_08380 PF13667 ThiC-associated domain GJQ55_08410 PF02311 AraC-like ligand binding domain GJQ55_08410 PF12833 Helix-turn-helix domain GJQ55_08415 PF01081 KDPG and KHG aldolase GJQ55_08420 PF00920 Dehydratase family GJQ55_08425 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GJQ55_08430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GJQ55_08430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GJQ55_08440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_08440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GJQ55_08460 PF01259 SAICAR synthetase GJQ55_08465 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GJQ55_08465 PF10996 Beta-Casp domain GJQ55_08465 PF00753 Metallo-beta-lactamase superfamily GJQ55_08475 PF00701 Dihydrodipicolinate synthetase family GJQ55_08480 PF01594 AI-2E family transporter GJQ55_08485 PF01206 Sulfurtransferase TusA GJQ55_08490 PF01435 Peptidase family M48 GJQ55_08490 PF07720 Tetratricopeptide repeat GJQ55_08495 PF02445 Quinolinate synthetase A protein GJQ55_08510 PF16331 TolA binding protein trimerisation GJQ55_08510 PF13525 Outer membrane lipoprotein GJQ55_08515 PF00691 OmpA family GJQ55_08520 PF04052 TolB amino-terminal domain GJQ55_08520 PF07676 WD40-like Beta Propeller Repeat GJQ55_08530 PF02472 Biopolymer transport protein ExbD/TolR GJQ55_08535 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_08540 PF03061 Thioesterase superfamily GJQ55_08545 PF17864 RuvB AAA lid domain GJQ55_08545 PF05491 RuvB C-terminal winged helix domain GJQ55_08545 PF05496 Holliday junction DNA helicase RuvB P-loop domain GJQ55_08550 PF07499 RuvA, C-terminal domain GJQ55_08550 PF01330 RuvA N terminal domain GJQ55_08555 PF02075 Crossover junction endodeoxyribonuclease RuvC GJQ55_08565 PF10431 C-terminal, D2-small domain, of ClpB protein GJQ55_08565 PF02861 Clp amino terminal domain, pathogenicity island component GJQ55_08565 PF07724 AAA domain (Cdc48 subfamily) GJQ55_08565 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_08565 PF17871 AAA lid domain GJQ55_08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_08575 PF03466 LysR substrate binding domain GJQ55_08585 PF11818 C-terminal domain of tail specific protease (DUF3340) GJQ55_08585 PF00595 PDZ domain GJQ55_08585 PF03572 Peptidase family S41 GJQ55_08585 PF17804 Tail specific protease N-terminal domain GJQ55_08590 PF01206 Sulfurtransferase TusA GJQ55_08595 PF00108 Thiolase, N-terminal domain GJQ55_08595 PF02803 Thiolase, C-terminal domain GJQ55_08605 PF03707 Bacterial signalling protein N terminal repeat GJQ55_08605 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_08605 PF00563 EAL domain GJQ55_08625 PF04408 Helicase associated domain (HA2) GJQ55_08625 PF08482 ATP-dependent helicase C-terminal GJQ55_08625 PF00270 DEAD/DEAH box helicase GJQ55_08625 PF00271 Helicase conserved C-terminal domain GJQ55_08640 PF00677 Lumazine binding domain GJQ55_08645 PF01734 Patatin-like phospholipase GJQ55_08665 PF02926 THUMP domain GJQ55_08665 PF10672 S-adenosylmethionine-dependent methyltransferase GJQ55_08665 PF01170 Putative RNA methylase family UPF0020 GJQ55_08670 PF04957 Ribosome modulation factor GJQ55_08675 PF01180 Dihydroorotate dehydrogenase GJQ55_08685 PF05088 Bacterial NAD-glutamate dehydrogenase GJQ55_08690 PF07726 ATPase family associated with various cellular activities (AAA) GJQ55_08690 PF17863 AAA lid domain GJQ55_08695 PF01882 Protein of unknown function DUF58 GJQ55_08705 PF07584 Aerotolerance regulator N-terminal GJQ55_08705 PF00092 von Willebrand factor type A domain GJQ55_08710 PF13519 von Willebrand factor type A domain GJQ55_08720 PF00034 Cytochrome c GJQ55_08720 PF03150 Di-haem cytochrome c peroxidase GJQ55_08725 PF00533 BRCA1 C Terminus (BRCT) domain GJQ55_08725 PF01653 NAD-dependent DNA ligase adenylation domain GJQ55_08725 PF03120 NAD-dependent DNA ligase OB-fold domain GJQ55_08725 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GJQ55_08725 PF12826 Helix-hairpin-helix motif GJQ55_08730 PF04354 ZipA, C-terminal FtsZ-binding domain GJQ55_08730 PF04354 ZipA, C-terminal FtsZ-binding domain GJQ55_08735 PF02463 RecF/RecN/SMC N terminal domain GJQ55_08745 PF00487 Fatty acid desaturase GJQ55_08750 PF03458 UPF0126 domain GJQ55_08755 PF08447 PAS fold GJQ55_08755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_08760 PF00756 Putative esterase GJQ55_08765 PF08240 Alcohol dehydrogenase GroES-like domain GJQ55_08765 PF00107 Zinc-binding dehydrogenase GJQ55_08770 PF02803 Thiolase, C-terminal domain GJQ55_08770 PF00108 Thiolase, N-terminal domain GJQ55_08775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GJQ55_08775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GJQ55_08775 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_08790 PF00005 ABC transporter GJQ55_08790 PF16326 ABC transporter C-terminal domain GJQ55_08790 PF12848 ABC transporter GJQ55_08795 PF00529 HlyD membrane-fusion protein of T1SS GJQ55_08795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJQ55_08800 PF00873 AcrB/AcrD/AcrF family GJQ55_08835 PF12833 Helix-turn-helix domain GJQ55_08835 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJQ55_08855 PF07044 Protein of unknown function (DUF1329) GJQ55_08860 PF01433 Peptidase family M1 domain GJQ55_08860 PF11940 Domain of unknown function (DUF3458) Ig-like fold GJQ55_08860 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GJQ55_08875 PF01694 Rhomboid family GJQ55_08875 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease GJQ55_08880 PF00149 Calcineurin-like phosphoesterase GJQ55_08885 PF01513 ATP-NAD kinase GJQ55_08900 PF01396 Topoisomerase DNA binding C4 zinc finger GJQ55_08900 PF01751 Toprim domain GJQ55_08900 PF01131 DNA topoisomerase GJQ55_08900 PF08272 Topoisomerase I zinc-ribbon-like GJQ55_08925 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJQ55_08925 PF12833 Helix-turn-helix domain GJQ55_08940 PF12833 Helix-turn-helix domain GJQ55_08945 PF00561 alpha/beta hydrolase fold GJQ55_08955 PF10502 Signal peptidase, peptidase S26 GJQ55_08965 PF01966 HD domain GJQ55_08970 PF01914 MarC family integral membrane protein GJQ55_08985 PF00474 Sodium:solute symporter family GJQ55_09005 PF00672 HAMP domain GJQ55_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09005 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_09005 PF01627 Hpt domain GJQ55_09005 PF00072 Response regulator receiver domain GJQ55_09010 PF00072 Response regulator receiver domain GJQ55_09010 PF00196 Bacterial regulatory proteins, luxR family GJQ55_09015 PF16177 Acetyl-coenzyme A synthetase N-terminus GJQ55_09015 PF00501 AMP-binding enzyme GJQ55_09015 PF13193 AMP-binding enzyme C-terminal domain GJQ55_09035 PF03918 Cytochrome C biogenesis protein GJQ55_09040 PF08534 Redoxin GJQ55_09045 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GJQ55_09045 PF01578 Cytochrome C assembly protein GJQ55_09050 PF03100 CcmE GJQ55_09055 PF04995 Heme exporter protein D (CcmD) GJQ55_09060 PF01578 Cytochrome C assembly protein GJQ55_09065 PF03379 CcmB protein GJQ55_09070 PF00005 ABC transporter GJQ55_09080 PF01312 FlhB HrpN YscU SpaS Family GJQ55_09090 PF02308 MgtC family GJQ55_09095 PF01979 Amidohydrolase family GJQ55_09105 PF13419 Haloacid dehalogenase-like hydrolase GJQ55_09110 PF00106 short chain dehydrogenase GJQ55_09115 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_09120 PF00849 RNA pseudouridylate synthase GJQ55_09120 PF01479 S4 domain GJQ55_09125 PF04079 Segregation and condensation complex subunit ScpB GJQ55_09130 PF02616 Segregation and condensation protein ScpA GJQ55_09135 PF00579 tRNA synthetases class I (W and Y) GJQ55_09140 PF01300 Telomere recombination GJQ55_09145 PF02811 PHP domain GJQ55_09150 PF03795 YCII-related domain GJQ55_09160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GJQ55_09170 PF01266 FAD dependent oxidoreductase GJQ55_09170 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GJQ55_09180 PF06794 Uncharacterised protein family (UPF0270) GJQ55_09190 PF00487 Fatty acid desaturase GJQ55_09195 PF00970 Oxidoreductase FAD-binding domain GJQ55_09195 PF00175 Oxidoreductase NAD-binding domain GJQ55_09195 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_09200 PF00463 Isocitrate lyase family GJQ55_09215 PF01351 Ribonuclease HII GJQ55_09220 PF02684 Lipid-A-disaccharide synthetase GJQ55_09225 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GJQ55_09225 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_09230 PF07977 FabA-like domain GJQ55_09235 PF00132 Bacterial transferase hexapeptide (six repeats) GJQ55_09235 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GJQ55_09240 PF03938 Outer membrane protein (OmpH-like) GJQ55_09245 PF01103 Surface antigen GJQ55_09245 PF07244 Surface antigen variable number repeat GJQ55_09250 PF17820 PDZ domain GJQ55_09250 PF13180 PDZ domain GJQ55_09250 PF02163 Peptidase family M50 GJQ55_09255 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GJQ55_09255 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GJQ55_09255 PF13288 DXP reductoisomerase C-terminal domain GJQ55_09265 PF01255 Putative undecaprenyl diphosphate synthase GJQ55_09270 PF01765 Ribosome recycling factor GJQ55_09275 PF00696 Amino acid kinase family GJQ55_09280 PF00889 Elongation factor TS GJQ55_09285 PF00318 Ribosomal protein S2 GJQ55_09290 PF00557 Metallopeptidase family M24 GJQ55_09295 PF08335 GlnD PII-uridylyltransferase GJQ55_09295 PF01966 HD domain GJQ55_09295 PF01909 Nucleotidyltransferase domain GJQ55_09295 PF01842 ACT domain GJQ55_09300 PF02678 Pirin GJQ55_09300 PF05726 Pirin C-terminal cupin domain GJQ55_09305 PF00271 Helicase conserved C-terminal domain GJQ55_09305 PF00270 DEAD/DEAH box helicase GJQ55_09325 PF06508 Queuosine biosynthesis protein QueC GJQ55_09335 PF14765 Polyketide synthase dehydratase GJQ55_09335 PF00550 Phosphopantetheine attachment site GJQ55_09335 PF08659 KR domain GJQ55_09335 PF02801 Beta-ketoacyl synthase, C-terminal domain GJQ55_09335 PF00698 Acyl transferase domain GJQ55_09335 PF08240 Alcohol dehydrogenase GroES-like domain GJQ55_09335 PF16197 Ketoacyl-synthetase C-terminal extension GJQ55_09335 PF00109 Beta-ketoacyl synthase, N-terminal domain GJQ55_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_09340 PF03466 LysR substrate binding domain GJQ55_09345 PF04219 Protein of unknown function, DUF GJQ55_09350 PF18030 RimK PreATP-grasp domain GJQ55_09350 PF08443 RimK-like ATP-grasp domain GJQ55_09355 PF00202 Aminotransferase class-III GJQ55_09360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GJQ55_09360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GJQ55_09365 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_09370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GJQ55_09370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GJQ55_09375 PF03466 LysR substrate binding domain GJQ55_09375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_09380 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_09380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09380 PF00672 HAMP domain GJQ55_09385 PF00072 Response regulator receiver domain GJQ55_09385 PF00486 Transcriptional regulatory protein, C terminal GJQ55_09390 PF03477 ATP cone domain GJQ55_09390 PF02867 Ribonucleotide reductase, barrel domain GJQ55_09390 PF00317 Ribonucleotide reductase, all-alpha domain GJQ55_09395 PF00268 Ribonucleotide reductase, small chain GJQ55_09400 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_09410 PF00578 AhpC/TSA family GJQ55_09420 PF12833 Helix-turn-helix domain GJQ55_09420 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJQ55_09440 PF01584 CheW-like domain GJQ55_09450 PF13614 AAA domain GJQ55_09455 PF13677 Membrane MotB of proton-channel complex MotA/MotB GJQ55_09455 PF00691 OmpA family GJQ55_09460 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_09465 PF00072 Response regulator receiver domain GJQ55_09465 PF01339 CheB methylesterase GJQ55_09470 PF01584 CheW-like domain GJQ55_09470 PF01627 Hpt domain GJQ55_09470 PF02895 Signal transducing histidine kinase, homodimeric domain GJQ55_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09470 PF00072 Response regulator receiver domain GJQ55_09475 PF04344 Chemotaxis phosphatase, CheZ GJQ55_09480 PF00072 Response regulator receiver domain GJQ55_09485 PF04539 Sigma-70 region 3 GJQ55_09485 PF04545 Sigma-70, region 4 GJQ55_09485 PF04542 Sigma-70 region 2 GJQ55_09490 PF10609 NUBPL iron-transfer P-loop NTPase GJQ55_09495 PF00448 SRP54-type protein, GTPase domain GJQ55_09500 PF00771 FHIPEP family GJQ55_09505 PF01312 FlhB HrpN YscU SpaS Family GJQ55_09510 PF01311 Bacterial export proteins, family 1 GJQ55_09515 PF01313 Bacterial export proteins, family 3 GJQ55_09520 PF00813 FliP family GJQ55_09530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GJQ55_09535 PF02154 Flagellar motor switch protein FliM GJQ55_09535 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GJQ55_09560 PF18269 T3SS EscN ATPase C-terminal domain GJQ55_09560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJQ55_09570 PF14842 FliG N-terminal domain GJQ55_09570 PF14841 FliG middle domain GJQ55_09570 PF01706 FliG C-terminal domain GJQ55_09575 PF08345 Flagellar M-ring protein C-terminal GJQ55_09575 PF01514 Secretory protein of YscJ/FliF family GJQ55_09580 PF02049 Flagellar hook-basal body complex protein FliE GJQ55_09585 PF00072 Response regulator receiver domain GJQ55_09585 PF02954 Bacterial regulatory protein, Fis family GJQ55_09585 PF00158 Sigma-54 interaction domain GJQ55_09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09590 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_09590 PF13188 PAS domain GJQ55_09595 PF02954 Bacterial regulatory protein, Fis family GJQ55_09595 PF06490 Flagellar regulatory protein FleQ GJQ55_09595 PF00158 Sigma-54 interaction domain GJQ55_09600 PF02561 Flagellar protein FliS GJQ55_09610 PF03167 Uracil DNA glycosylase superfamily GJQ55_09615 PF00152 tRNA synthetases class II (D, K and N) GJQ55_09615 PF01336 OB-fold nucleic acid binding domain GJQ55_09635 PF07195 Flagellar hook-associated protein 2 C-terminus GJQ55_09635 PF07196 Flagellin hook IN motif GJQ55_09635 PF02465 Flagellar hook-associated protein 2 N-terminus GJQ55_09640 PF03646 FlaG protein GJQ55_09645 PF00700 Bacterial flagellin C-terminal helical region GJQ55_09645 PF00700 Bacterial flagellin C-terminal helical region GJQ55_09645 PF00669 Bacterial flagellin N-terminal helical region GJQ55_09645 PF00669 Bacterial flagellin N-terminal helical region GJQ55_09660 PF00669 Bacterial flagellin N-terminal helical region GJQ55_09670 PF10135 Rod binding protein GJQ55_09670 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GJQ55_09680 PF02119 Flagellar P-ring protein GJQ55_09685 PF02107 Flagellar L-ring protein GJQ55_09690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GJQ55_09690 PF00460 Flagella basal body rod protein GJQ55_09695 PF00460 Flagella basal body rod protein GJQ55_09695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GJQ55_09700 PF07559 Flagellar basal body protein FlaE GJQ55_09700 PF00460 Flagella basal body rod protein GJQ55_09700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GJQ55_09705 PF13861 FlgD Tudor-like domain GJQ55_09705 PF03963 Flagellar hook capping protein - N-terminal region GJQ55_09705 PF13860 FlgD Ig-like domain GJQ55_09710 PF00460 Flagella basal body rod protein GJQ55_09710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GJQ55_09715 PF00460 Flagella basal body rod protein GJQ55_09720 PF01739 CheR methyltransferase, SAM binding domain GJQ55_09720 PF03705 CheR methyltransferase, all-alpha domain GJQ55_09725 PF00072 Response regulator receiver domain GJQ55_09725 PF01584 CheW-like domain GJQ55_09745 PF07238 PilZ domain GJQ55_09745 PF07317 Flagellar regulator YcgR GJQ55_09770 PF01906 Putative heavy-metal-binding GJQ55_09775 PF01906 Putative heavy-metal-binding GJQ55_09780 PF01435 Peptidase family M48 GJQ55_09780 PF13181 Tetratricopeptide repeat GJQ55_09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_09810 PF13638 PIN domain GJQ55_09810 PF02562 PhoH-like protein GJQ55_09820 PF03641 Possible lysine decarboxylase GJQ55_09825 PF00849 RNA pseudouridylate synthase GJQ55_09830 PF13098 Thioredoxin-like domain GJQ55_09830 PF10411 Disulfide bond isomerase protein N-terminus GJQ55_09835 PF01245 Ribosomal protein L19 GJQ55_09840 PF01746 tRNA (Guanine-1)-methyltransferase GJQ55_09845 PF05239 PRC-barrel domain GJQ55_09845 PF01782 RimM N-terminal domain GJQ55_09850 PF00886 Ribosomal protein S16 GJQ55_09855 PF02690 Na+/Pi-cotransporter GJQ55_09860 PF00437 Type II/IV secretion system protein GJQ55_09870 PF13427 Domain of unknown function (DUF4111) GJQ55_09870 PF01909 Nucleotidyltransferase domain GJQ55_09895 PF02769 AIR synthase related protein, C-terminal domain GJQ55_09895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GJQ55_09895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GJQ55_09900 PF00497 Bacterial extracellular solute-binding proteins, family 3 GJQ55_09900 PF01464 Transglycosylase SLT domain GJQ55_09905 PF14437 MafB19-like deaminase GJQ55_09915 PF01253 Translation initiation factor SUI1 GJQ55_09920 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_09920 PF00497 Bacterial extracellular solute-binding proteins, family 3 GJQ55_09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09925 PF01037 Lrp/AsnC ligand binding domain GJQ55_09930 PF00682 HMGL-like GJQ55_09930 PF08502 LeuA allosteric (dimerisation) domain GJQ55_09935 PF00580 UvrD/REP helicase N-terminal domain GJQ55_09935 PF13361 UvrD-like helicase C-terminal domain GJQ55_09945 PF02798 Glutathione S-transferase, N-terminal domain GJQ55_09950 PF00271 Helicase conserved C-terminal domain GJQ55_09950 PF03880 DbpA RNA binding domain GJQ55_09950 PF00270 DEAD/DEAH box helicase GJQ55_09950 PF12343 Cold shock protein DEAD box A GJQ55_09955 PF00497 Bacterial extracellular solute-binding proteins, family 3 GJQ55_09955 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_09955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_09960 PF06865 Pyrimidine/purine nucleoside phosphorylase GJQ55_09970 PF12843 Putative quorum-sensing-regulated virulence factor GJQ55_09975 PF00117 Glutamine amidotransferase class-I GJQ55_09975 PF00958 GMP synthase C terminal domain GJQ55_09975 PF02540 NAD synthase GJQ55_09990 PF00860 Permease family GJQ55_10010 PF04445 Putative SAM-dependent methyltransferase GJQ55_10015 PF02673 Bacitracin resistance protein BacA GJQ55_10020 PF00814 Glycoprotease family GJQ55_10030 PF05191 Adenylate kinase, active site lid GJQ55_10035 PF00311 Phosphoenolpyruvate carboxylase GJQ55_10040 PF03819 MazG nucleotide pyrophosphohydrolase domain GJQ55_10045 PF13291 ACT domain GJQ55_10045 PF04607 Region found in RelA / SpoT proteins GJQ55_10045 PF02824 TGS domain GJQ55_10050 PF05958 tRNA (Uracil-5-)-methyltransferase GJQ55_10050 PF01938 TRAM domain GJQ55_10055 PF00291 Pyridoxal-phosphate dependent enzyme GJQ55_10060 PF00672 HAMP domain GJQ55_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_10060 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_10060 PF00072 Response regulator receiver domain GJQ55_10060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GJQ55_10060 PF01627 Hpt domain GJQ55_10065 PF01648 4'-phosphopantetheinyl transferase superfamily GJQ55_10070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GJQ55_10075 PF02565 Recombination protein O C terminal GJQ55_10075 PF11967 Recombination protein O N terminal GJQ55_10080 PF01926 50S ribosome-binding GTPase GJQ55_10080 PF07650 KH domain GJQ55_10085 PF14622 Ribonuclease-III-like GJQ55_10085 PF00035 Double-stranded RNA binding motif GJQ55_10095 PF06421 GTP-binding protein LepA C-terminus GJQ55_10095 PF03144 Elongation factor Tu domain 2 GJQ55_10095 PF00009 Elongation factor Tu GTP binding domain GJQ55_10095 PF00679 Elongation factor G C-terminus GJQ55_10100 PF13180 PDZ domain GJQ55_10110 PF03888 MucB/RseB N-terminal domain GJQ55_10110 PF17188 MucB/RseB C-terminal domain GJQ55_10115 PF03873 Anti sigma-E protein RseA, C-terminal domain GJQ55_10115 PF03872 Anti sigma-E protein RseA, N-terminal domain GJQ55_10120 PF08281 Sigma-70, region 4 GJQ55_10120 PF04542 Sigma-70 region 2 GJQ55_10125 PF00890 FAD binding domain GJQ55_10125 PF02910 Fumarate reductase flavoprotein C-term GJQ55_10135 PF03937 Flavinator of succinate dehydrogenase GJQ55_10140 PF01571 Aminomethyltransferase folate-binding domain GJQ55_10150 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_10160 PF00561 alpha/beta hydrolase fold GJQ55_10170 PF12848 ABC transporter GJQ55_10170 PF00005 ABC transporter GJQ55_10175 PF00027 Cyclic nucleotide-binding domain GJQ55_10175 PF13545 Crp-like helix-turn-helix domain GJQ55_10180 PF03600 Citrate transporter GJQ55_10190 PF09179 TilS substrate binding domain GJQ55_10190 PF01171 PP-loop family GJQ55_10190 PF11734 TilS substrate C-terminal domain GJQ55_10195 PF01336 OB-fold nucleic acid binding domain GJQ55_10195 PF02811 PHP domain GJQ55_10195 PF14579 Helix-hairpin-helix motif GJQ55_10195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GJQ55_10195 PF07733 Bacterial DNA polymerase III alpha NTPase domain GJQ55_10200 PF18030 RimK PreATP-grasp domain GJQ55_10200 PF08443 RimK-like ATP-grasp domain GJQ55_10210 PF01026 TatD related DNase GJQ55_10215 PF00885 6,7-dimethyl-8-ribityllumazine synthase GJQ55_10220 PF00270 DEAD/DEAH box helicase GJQ55_10220 PF00271 Helicase conserved C-terminal domain GJQ55_10230 PF01464 Transglycosylase SLT domain GJQ55_10230 PF00497 Bacterial extracellular solute-binding proteins, family 3 GJQ55_10250 PF09905 DNA-binding protein VF530 GJQ55_10275 PF00118 TCP-1/cpn60 chaperonin family GJQ55_10280 PF00166 Chaperonin 10 Kd subunit GJQ55_10295 PF01189 16S rRNA methyltransferase RsmB/F GJQ55_10295 PF01029 NusB family GJQ55_10300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GJQ55_10300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GJQ55_10305 PF00005 ABC transporter GJQ55_10305 PF00664 ABC transporter transmembrane region GJQ55_10310 PF14760 Rnk N-terminus GJQ55_10310 PF01272 Transcription elongation factor, GreA/GreB, C-term GJQ55_10320 PF01694 Rhomboid family GJQ55_10325 PF00378 Enoyl-CoA hydratase/isomerase GJQ55_10330 PF00762 Ferrochelatase GJQ55_10335 PF07690 Major Facilitator Superfamily GJQ55_10340 PF16295 Tetracyclin repressor-like, C-terminal domain GJQ55_10340 PF00440 Bacterial regulatory proteins, tetR family GJQ55_10360 PF00919 Uncharacterized protein family UPF0004 GJQ55_10360 PF01938 TRAM domain GJQ55_10360 PF04055 Radical SAM superfamily GJQ55_10365 PF02562 PhoH-like protein GJQ55_10370 PF02130 Uncharacterized protein family UPF0054 GJQ55_10375 PF03471 Transporter associated domain GJQ55_10375 PF00571 CBS domain GJQ55_10380 PF00795 Carbon-nitrogen hydrolase GJQ55_10390 PF00293 NUDIX domain GJQ55_10395 PF01960 ArgJ family GJQ55_10400 PF02810 SEC-C motif GJQ55_10400 PF07517 SecA DEAD-like domain GJQ55_10400 PF01043 SecA preprotein cross-linking domain GJQ55_10400 PF07516 SecA Wing and Scaffold domain GJQ55_10405 PF01551 Peptidase family M23 GJQ55_10405 PF01476 LysM domain GJQ55_10405 PF08525 Opacity-associated protein A N-terminal motif GJQ55_10410 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GJQ55_10415 PF12327 FtsZ family, C-terminal domain GJQ55_10415 PF00091 Tubulin/FtsZ family, GTPase domain GJQ55_10420 PF02491 SHS2 domain inserted in FTSA GJQ55_10425 PF03799 Cell division protein FtsQ GJQ55_10425 PF08478 POTRA domain, FtsQ-type GJQ55_10430 PF01820 D-ala D-ala ligase N-terminus GJQ55_10430 PF07478 D-ala D-ala ligase C-terminus GJQ55_10435 PF01225 Mur ligase family, catalytic domain GJQ55_10435 PF02875 Mur ligase family, glutamate ligase domain GJQ55_10435 PF08245 Mur ligase middle domain GJQ55_10440 PF03033 Glycosyltransferase family 28 N-terminal domain GJQ55_10440 PF04101 Glycosyltransferase family 28 C-terminal domain GJQ55_10445 PF01098 Cell cycle protein GJQ55_10450 PF02875 Mur ligase family, glutamate ligase domain GJQ55_10450 PF08245 Mur ligase middle domain GJQ55_10455 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GJQ55_10455 PF00953 Glycosyl transferase family 4 GJQ55_10460 PF01225 Mur ligase family, catalytic domain GJQ55_10460 PF02875 Mur ligase family, glutamate ligase domain GJQ55_10460 PF08245 Mur ligase middle domain GJQ55_10465 PF08245 Mur ligase middle domain GJQ55_10465 PF01225 Mur ligase family, catalytic domain GJQ55_10465 PF02875 Mur ligase family, glutamate ligase domain GJQ55_10470 PF03717 Penicillin-binding Protein dimerisation domain GJQ55_10470 PF00905 Penicillin binding protein transpeptidase domain GJQ55_10475 PF04999 Cell division protein FtsL GJQ55_10480 PF01795 MraW methylase family GJQ55_10485 PF02381 MraZ protein, putative antitoxin-like GJQ55_10505 PF10417 C-terminal domain of 1-Cys peroxiredoxin GJQ55_10505 PF00578 AhpC/TSA family GJQ55_10515 PF00873 AcrB/AcrD/AcrF family GJQ55_10520 PF13533 Biotin-lipoyl like GJQ55_10525 PF00440 Bacterial regulatory proteins, tetR family GJQ55_10530 PF01597 Glycine cleavage H-protein GJQ55_10545 PF00689 Cation transporting ATPase, C-terminus GJQ55_10545 PF00690 Cation transporter/ATPase, N-terminus GJQ55_10550 PF06039 Malate:quinone oxidoreductase (Mqo) GJQ55_10555 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit GJQ55_10560 PF00364 Biotin-requiring enzyme GJQ55_10560 PF00682 HMGL-like GJQ55_10560 PF02436 Conserved carboxylase domain GJQ55_10565 PF04277 Oxaloacetate decarboxylase, gamma chain GJQ55_10570 PF01207 Dihydrouridine synthase (Dus) GJQ55_10580 PF02798 Glutathione S-transferase, N-terminal domain GJQ55_10585 PF00793 DAHP synthetase I family GJQ55_10590 PF08003 Protein of unknown function (DUF1698) GJQ55_10595 PF13649 Methyltransferase domain GJQ55_10600 PF02646 RmuC family GJQ55_10610 PF17113 Regulatory signalling modulator protein AmpE GJQ55_10610 PF03186 CobD/Cbib protein GJQ55_10615 PF01510 N-acetylmuramoyl-L-alanine amidase GJQ55_10620 PF01235 Sodium:alanine symporter family GJQ55_10625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GJQ55_10625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GJQ55_10630 PF00114 Pilin (bacterial filament) GJQ55_10630 PF07963 Prokaryotic N-terminal methylation motif GJQ55_10640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GJQ55_10640 PF00437 Type II/IV secretion system protein GJQ55_10645 PF00482 Type II secretion system (T2SS), protein F GJQ55_10650 PF06750 Bacterial Peptidase A24 N-terminal domain GJQ55_10650 PF01478 Type IV leader peptidase family GJQ55_10655 PF01121 Dephospho-CoA kinase GJQ55_10660 PF03884 DNA gyrase inhibitor YacG GJQ55_10670 PF03707 Bacterial signalling protein N terminal repeat GJQ55_10670 PF00563 EAL domain GJQ55_10670 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_10680 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_10680 PF00563 EAL domain GJQ55_10680 PF00072 Response regulator receiver domain GJQ55_10685 PF01220 Dehydroquinase class II GJQ55_10700 PF01207 Dihydrouridine synthase (Dus) GJQ55_10705 PF02954 Bacterial regulatory protein, Fis family GJQ55_10710 PF01808 AICARFT/IMPCHase bienzyme GJQ55_10710 PF02142 MGS-like domain GJQ55_10715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GJQ55_10715 PF02843 Phosphoribosylglycinamide synthetase, C domain GJQ55_10715 PF02844 Phosphoribosylglycinamide synthetase, N domain GJQ55_10720 PF00072 Response regulator receiver domain GJQ55_10720 PF09308 LuxQ, periplasmic GJQ55_10720 PF00512 His Kinase A (phospho-acceptor) domain GJQ55_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_10725 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_10725 PF17862 AAA+ lid domain GJQ55_10725 PF06480 FtsH Extracellular GJQ55_10725 PF01434 Peptidase family M41 GJQ55_10730 PF03232 Ubiquinone biosynthesis protein COQ7 GJQ55_10740 PF05099 Tellurite resistance protein TerB GJQ55_10740 PF00226 DnaJ domain GJQ55_10745 PF00483 Nucleotidyl transferase GJQ55_10750 PF01636 Phosphotransferase enzyme family GJQ55_10755 PF04453 LPS transport system D GJQ55_10755 PF03968 OstA-like protein GJQ55_10760 PF00639 PPIC-type PPIASE domain GJQ55_10760 PF09312 SurA N-terminal domain GJQ55_10765 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GJQ55_10770 PF00398 Ribosomal RNA adenine dimethylase GJQ55_10775 PF04379 ApaG domain GJQ55_10780 PF00149 Calcineurin-like phosphoesterase GJQ55_10785 PF00581 Rhodanese-like domain GJQ55_10810 PF01966 HD domain GJQ55_10810 PF01743 Poly A polymerase head domain GJQ55_10810 PF12627 Probable RNA and SrmB- binding site of polymerase A GJQ55_10815 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GJQ55_10815 PF00809 Pterin binding enzyme GJQ55_10820 PF02152 Dihydroneopterin aldolase GJQ55_10825 PF00814 Glycoprotease family GJQ55_10830 PF01165 Ribosomal protein S21 GJQ55_10835 PF09424 Yqey-like protein GJQ55_10840 PF10410 DnaB-helicase binding domain of primase GJQ55_10840 PF08278 DNA primase DnaG DnaB-binding GJQ55_10840 PF13662 Toprim domain GJQ55_10840 PF08275 DNA primase catalytic core, N-terminal domain GJQ55_10840 PF01807 CHC2 zinc finger GJQ55_10845 PF04545 Sigma-70, region 4 GJQ55_10845 PF04539 Sigma-70 region 3 GJQ55_10845 PF04542 Sigma-70 region 2 GJQ55_10845 PF03979 Sigma-70 factor, region 1.1 GJQ55_10845 PF04546 Sigma-70, non-essential region GJQ55_10845 PF00140 Sigma-70 factor, region 1.2 GJQ55_10855 PF00111 2Fe-2S iron-sulfur cluster binding domain GJQ55_10855 PF01799 [2Fe-2S] binding domain GJQ55_10860 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GJQ55_10865 PF13478 XdhC Rossmann domain GJQ55_10865 PF02625 XdhC and CoxI family GJQ55_10880 PF00501 AMP-binding enzyme GJQ55_10880 PF13193 AMP-binding enzyme C-terminal domain GJQ55_10890 PF00892 EamA-like transporter family GJQ55_10895 PF01810 LysE type translocator GJQ55_10900 PF00072 Response regulator receiver domain GJQ55_10900 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_10950 PF02599 Global regulator protein family GJQ55_10955 PF13840 ACT domain GJQ55_10955 PF01842 ACT domain GJQ55_10955 PF00696 Amino acid kinase family GJQ55_10960 PF01411 tRNA synthetases class II (A) GJQ55_10960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GJQ55_10960 PF02272 DHHA1 domain GJQ55_10980 PF00561 alpha/beta hydrolase fold GJQ55_10985 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_10990 PF02631 RecX family GJQ55_10995 PF00154 recA bacterial DNA recombination protein GJQ55_11000 PF02464 Competence-damaged protein GJQ55_11005 PF01624 MutS domain I GJQ55_11005 PF05188 MutS domain II GJQ55_11005 PF05192 MutS domain III GJQ55_11005 PF05190 MutS family domain IV GJQ55_11005 PF00488 MutS domain V GJQ55_11010 PF11953 Domain of unknown function (DUF3470) GJQ55_11010 PF00037 4Fe-4S binding domain GJQ55_11015 PF04545 Sigma-70, region 4 GJQ55_11015 PF04539 Sigma-70 region 3 GJQ55_11015 PF00140 Sigma-70 factor, region 1.2 GJQ55_11015 PF04542 Sigma-70 region 2 GJQ55_11020 PF01476 LysM domain GJQ55_11020 PF01551 Peptidase family M23 GJQ55_11035 PF01975 Survival protein SurE GJQ55_11040 PF01142 tRNA pseudouridine synthase D (TruD) GJQ55_11045 PF02542 YgbB family GJQ55_11050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GJQ55_11055 PF04977 Septum formation initiator GJQ55_11060 PF00113 Enolase, C-terminal TIM barrel domain GJQ55_11060 PF03952 Enolase, N-terminal domain GJQ55_11065 PF06418 CTP synthase N-terminus GJQ55_11065 PF00117 Glutamine amidotransferase class-I GJQ55_11075 PF01618 MotA/TolQ/ExbB proton channel family GJQ55_11080 PF13677 Membrane MotB of proton-channel complex MotA/MotB GJQ55_11080 PF00691 OmpA family GJQ55_11090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_11090 PF00672 HAMP domain GJQ55_11100 PF01784 NIF3 (NGG1p interacting factor 3) GJQ55_11105 PF13180 PDZ domain GJQ55_11110 PF00155 Aminotransferase class I and II GJQ55_11115 PF00815 Histidinol dehydrogenase GJQ55_11120 PF01634 ATP phosphoribosyltransferase GJQ55_11125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GJQ55_11130 PF01722 BolA-like protein GJQ55_11140 PF02470 MlaD protein GJQ55_11145 PF02405 Permease MlaE GJQ55_11150 PF00005 ABC transporter GJQ55_11155 PF01699 Sodium/calcium exchanger protein GJQ55_11160 PF00571 CBS domain GJQ55_11160 PF01380 SIS domain GJQ55_11170 PF03968 OstA-like protein GJQ55_11175 PF00005 ABC transporter GJQ55_11175 PF12399 Branched-chain amino acid ATP-binding cassette transporter GJQ55_11180 PF04963 Sigma-54 factor, core binding domain GJQ55_11180 PF04552 Sigma-54, DNA binding domain GJQ55_11180 PF00309 Sigma-54 factor, Activator interacting domain (AID) GJQ55_11185 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GJQ55_11190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GJQ55_11195 PF03668 P-loop ATPase protein family GJQ55_11200 PF00381 PTS HPr component phosphorylation site GJQ55_11205 PF00571 CBS domain GJQ55_11205 PF03448 MgtE intracellular N domain GJQ55_11205 PF01769 Divalent cation transporter GJQ55_11210 PF04751 Protein of unknown function (DUF615) GJQ55_11215 PF00795 Carbon-nitrogen hydrolase GJQ55_11225 PF10150 Ribonuclease E/G family GJQ55_11225 PF00575 S1 RNA binding domain GJQ55_11230 PF02545 Maf-like protein GJQ55_11240 PF04085 rod shape-determining protein MreC GJQ55_11250 PF02686 Glu-tRNAGln amidotransferase C subunit GJQ55_11255 PF01425 Amidase GJQ55_11260 PF02637 GatB domain GJQ55_11260 PF02934 GatB/GatE catalytic domain GJQ55_11270 PF04386 Stringent starvation protein B GJQ55_11275 PF00043 Glutathione S-transferase, C-terminal domain GJQ55_11275 PF02798 Glutathione S-transferase, N-terminal domain GJQ55_11280 PF02167 Cytochrome C1 family GJQ55_11285 PF00032 Cytochrome b(C-terminal)/b6/petD GJQ55_11285 PF00033 Cytochrome b/b6/petB GJQ55_11290 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GJQ55_11290 PF00355 Rieske [2Fe-2S] domain GJQ55_11295 PF00380 Ribosomal protein S9/S16 GJQ55_11300 PF00572 Ribosomal protein L13 GJQ55_11310 PF16658 Class II release factor RF3, C-terminal domain GJQ55_11310 PF00009 Elongation factor Tu GTP binding domain GJQ55_11320 PF00072 Response regulator receiver domain GJQ55_11330 PF00583 Acetyltransferase (GNAT) family GJQ55_11340 PF08502 LeuA allosteric (dimerisation) domain GJQ55_11340 PF00682 HMGL-like GJQ55_11345 PF11412 Disulphide bond corrector protein DsbC GJQ55_11345 PF02683 Cytochrome C biogenesis protein transmembrane region GJQ55_11350 PF02424 ApbE family GJQ55_11360 PF03485 Arginyl tRNA synthetase N terminal domain GJQ55_11360 PF05746 DALR anticodon binding domain GJQ55_11360 PF00750 tRNA synthetases class I (R) GJQ55_11365 PF02525 Flavodoxin-like fold GJQ55_11370 PF12706 Beta-lactamase superfamily domain GJQ55_11370 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GJQ55_11370 PF17770 Ribonuclease J C-terminal domain GJQ55_11380 PF03591 AzlC protein GJQ55_11385 PF05437 Branched-chain amino acid transport protein (AzlD) GJQ55_11395 PF00920 Dehydratase family GJQ55_11400 PF00005 ABC transporter GJQ55_11405 PF01230 HIT domain GJQ55_11425 PF01066 CDP-alcohol phosphatidyltransferase GJQ55_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_11430 PF03466 LysR substrate binding domain GJQ55_11435 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GJQ55_11435 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GJQ55_11440 PF12792 CSS motif domain associated with EAL GJQ55_11440 PF00563 EAL domain GJQ55_11445 PF00155 Aminotransferase class I and II GJQ55_11450 PF02657 Fe-S metabolism associated domain GJQ55_11455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_11455 PF00672 HAMP domain GJQ55_11460 PF02687 FtsX-like permease family GJQ55_11460 PF12704 MacB-like periplasmic core domain GJQ55_11460 PF00005 ABC transporter GJQ55_11465 PF00005 ABC transporter GJQ55_11465 PF12704 MacB-like periplasmic core domain GJQ55_11465 PF02687 FtsX-like permease family GJQ55_11475 PF02321 Outer membrane efflux protein GJQ55_11480 PF01116 Fructose-bisphosphate aldolase class-II GJQ55_11485 PF00162 Phosphoglycerate kinase GJQ55_11490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GJQ55_11490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GJQ55_11495 PF00296 Luciferase-like monooxygenase GJQ55_11505 PF17763 Glutaminase/Asparaginase C-terminal domain GJQ55_11505 PF00710 Asparaginase, N-terminal GJQ55_11510 PF02696 Uncharacterized ACR, YdiU/UPF0061 family GJQ55_11515 PF00483 Nucleotidyl transferase GJQ55_11515 PF01050 Mannose-6-phosphate isomerase GJQ55_11520 PF00149 Calcineurin-like phosphoesterase GJQ55_11525 PF00849 RNA pseudouridylate synthase GJQ55_11525 PF01479 S4 domain GJQ55_11550 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system GJQ55_11555 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system GJQ55_11565 PF00588 SpoU rRNA Methylase family GJQ55_11565 PF08032 RNA 2'-O ribose methyltransferase substrate binding GJQ55_11575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_11575 PF03466 LysR substrate binding domain GJQ55_11585 PF08267 Cobalamin-independent synthase, N-terminal domain GJQ55_11585 PF01717 Cobalamin-independent synthase, Catalytic domain GJQ55_11590 PF01925 Sulfite exporter TauE/SafE GJQ55_11595 PF00106 short chain dehydrogenase GJQ55_11605 PF02779 Transketolase, pyrimidine binding domain GJQ55_11605 PF02780 Transketolase, C-terminal domain GJQ55_11605 PF00456 Transketolase, thiamine diphosphate binding domain GJQ55_11610 PF12392 Collagenase GJQ55_11610 PF01136 Peptidase family U32 GJQ55_11615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GJQ55_11625 PF03480 Bacterial extracellular solute-binding protein, family 7 GJQ55_11630 PF04237 YjbR GJQ55_11635 PF00842 Alanine racemase, C-terminal domain GJQ55_11635 PF01168 Alanine racemase, N-terminal domain GJQ55_11665 PF00772 DnaB-like helicase N terminal domain GJQ55_11665 PF03796 DnaB-like helicase C terminal domain GJQ55_11670 PF03948 Ribosomal protein L9, C-terminal domain GJQ55_11670 PF01281 Ribosomal protein L9, N-terminal domain GJQ55_11680 PF01084 Ribosomal protein S18 GJQ55_11685 PF01250 Ribosomal protein S6 GJQ55_11700 PF00883 Cytosol aminopeptidase family, catalytic domain GJQ55_11700 PF02789 Cytosol aminopeptidase family, N-terminal domain GJQ55_11705 PF00484 Carbonic anhydrase GJQ55_11710 PF02436 Conserved carboxylase domain GJQ55_11710 PF00364 Biotin-requiring enzyme GJQ55_11710 PF00682 HMGL-like GJQ55_11715 PF02785 Biotin carboxylase C-terminal domain GJQ55_11715 PF00289 Biotin carboxylase, N-terminal domain GJQ55_11715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJQ55_11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_11720 PF03466 LysR substrate binding domain GJQ55_11725 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_11725 PF13192 Thioredoxin domain GJQ55_11730 PF10417 C-terminal domain of 1-Cys peroxiredoxin GJQ55_11730 PF00578 AhpC/TSA family GJQ55_11735 PF08032 RNA 2'-O ribose methyltransferase substrate binding GJQ55_11735 PF00588 SpoU rRNA Methylase family GJQ55_11740 PF00773 RNB domain GJQ55_11740 PF00575 S1 RNA binding domain GJQ55_11740 PF17876 Cold shock domain GJQ55_11740 PF08461 Ribonuclease R winged-helix domain GJQ55_11740 PF08206 Ribonuclease B OB domain GJQ55_11750 PF00672 HAMP domain GJQ55_11750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_11750 PF17200 Single Cache domain 2 GJQ55_11755 PF07724 AAA domain (Cdc48 subfamily) GJQ55_11755 PF10431 C-terminal, D2-small domain, of ClpB protein GJQ55_11755 PF00004 ATPase family associated with various cellular activities (AAA) GJQ55_11760 PF00227 Proteasome subunit GJQ55_11765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJQ55_11785 PF00753 Metallo-beta-lactamase superfamily GJQ55_11795 PF01197 Ribosomal protein L31 GJQ55_11800 PF00270 DEAD/DEAH box helicase GJQ55_11800 PF17764 3′ DNA-binding domain (3′BD) GJQ55_11800 PF18074 Primosomal protein N C-terminal domain GJQ55_11800 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GJQ55_11800 PF00271 Helicase conserved C-terminal domain GJQ55_11805 PF04608 Phosphatidylglycerophosphatase A GJQ55_11810 PF08362 YcdC-like protein, C-terminal region GJQ55_11810 PF00440 Bacterial regulatory proteins, tetR family GJQ55_11820 PF01208 Uroporphyrinogen decarboxylase (URO-D) GJQ55_11830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GJQ55_11830 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJQ55_11835 PF00310 Glutamine amidotransferases class-II GJQ55_11835 PF04898 Glutamate synthase central domain GJQ55_11835 PF01645 Conserved region in glutamate synthase GJQ55_11835 PF01493 GXGXG motif GJQ55_11845 PF01761 3-dehydroquinate synthase GJQ55_11850 PF01202 Shikimate kinase GJQ55_11855 PF11741 AMIN domain GJQ55_11855 PF07660 Secretin and TonB N terminus short domain GJQ55_11855 PF03958 Bacterial type II/III secretion system short domain GJQ55_11855 PF00263 Bacterial type II and III secretion system protein GJQ55_11860 PF04351 Pilus assembly protein, PilP GJQ55_11865 PF04350 Pilus assembly protein, PilO GJQ55_11870 PF05137 Fimbrial assembly protein (PilN) GJQ55_11875 PF11104 Type IV pilus assembly protein PilM; GJQ55_11880 PF17092 Penicillin-binding protein OB-like domain GJQ55_11880 PF00912 Transglycosylase GJQ55_11880 PF00905 Penicillin binding protein transpeptidase domain GJQ55_11885 PF01565 FAD binding domain GJQ55_11885 PF02913 FAD linked oxidases, C-terminal domain GJQ55_11890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GJQ55_11890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GJQ55_11895 PF00977 Histidine biosynthesis protein GJQ55_11900 PF00977 Histidine biosynthesis protein GJQ55_11905 PF00117 Glutamine amidotransferase class-I GJQ55_11910 PF00475 Imidazoleglycerol-phosphate dehydratase GJQ55_11925 PF00563 EAL domain GJQ55_11925 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_11925 PF03707 Bacterial signalling protein N terminal repeat GJQ55_11930 PF10576 Iron-sulfur binding domain of endonuclease III GJQ55_11930 PF00633 Helix-hairpin-helix motif GJQ55_11930 PF00730 HhH-GPD superfamily base excision DNA repair protein GJQ55_11930 PF14815 NUDIX domain GJQ55_11935 PF04362 Bacterial Fe(2+) trafficking GJQ55_11970 PF00579 tRNA synthetases class I (W and Y) GJQ55_11975 PF04225 Opacity-associated protein A LysM-like domain GJQ55_11975 PF01551 Peptidase family M23 GJQ55_11980 PF03702 Anhydro-N-acetylmuramic acid kinase GJQ55_11985 PF01521 Iron-sulphur cluster biosynthesis GJQ55_12000 PF01118 Semialdehyde dehydrogenase, NAD binding domain GJQ55_12000 PF02774 Semialdehyde dehydrogenase, dimerisation domain GJQ55_12005 PF00654 Voltage gated chloride channel GJQ55_12010 PF03653 Uncharacterised protein family (UPF0093) GJQ55_12015 PF00202 Aminotransferase class-III GJQ55_12025 PF00672 HAMP domain GJQ55_12025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_12035 PF00905 Penicillin binding protein transpeptidase domain GJQ55_12035 PF00912 Transglycosylase GJQ55_12035 PF14814 Bifunctional transglycosylase second domain GJQ55_12040 PF03553 Na+/H+ antiporter family GJQ55_12045 PF03710 Glutamate-ammonia ligase adenylyltransferase GJQ55_12045 PF08335 GlnD PII-uridylyltransferase GJQ55_12050 PF01063 Amino-transferase class IV GJQ55_12055 PF13230 Glutamine amidotransferases class-II GJQ55_12075 PF00245 Alkaline phosphatase GJQ55_12080 PF01131 DNA topoisomerase GJQ55_12080 PF01751 Toprim domain GJQ55_12085 PF01841 Transglutaminase-like superfamily GJQ55_12085 PF08379 Bacterial transglutaminase-like N-terminal region GJQ55_12095 PF17863 AAA lid domain GJQ55_12095 PF07726 ATPase family associated with various cellular activities (AAA) GJQ55_12100 PF01022 Bacterial regulatory protein, arsR family GJQ55_12105 PF02773 S-adenosylmethionine synthetase, C-terminal domain GJQ55_12105 PF02772 S-adenosylmethionine synthetase, central domain GJQ55_12105 PF00438 S-adenosylmethionine synthetase, N-terminal domain GJQ55_12115 PF05221 S-adenosyl-L-homocysteine hydrolase GJQ55_12115 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GJQ55_12120 PF02219 Methylenetetrahydrofolate reductase GJQ55_12130 PF01050 Mannose-6-phosphate isomerase GJQ55_12130 PF00483 Nucleotidyl transferase GJQ55_12135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJQ55_12135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJQ55_12135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJQ55_12135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJQ55_12145 PF00535 Glycosyl transferase family 2 GJQ55_12150 PF00534 Glycosyl transferases group 1 GJQ55_12155 PF04932 O-Antigen ligase GJQ55_12165 PF01339 CheB methylesterase GJQ55_12165 PF00072 Response regulator receiver domain GJQ55_12170 PF01627 Hpt domain GJQ55_12170 PF00072 Response regulator receiver domain GJQ55_12170 PF01584 CheW-like domain GJQ55_12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_12170 PF02895 Signal transducing histidine kinase, homodimeric domain GJQ55_12175 PF01739 CheR methyltransferase, SAM binding domain GJQ55_12175 PF03705 CheR methyltransferase, all-alpha domain GJQ55_12180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GJQ55_12180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJQ55_12185 PF01584 CheW-like domain GJQ55_12190 PF00072 Response regulator receiver domain GJQ55_12195 PF00072 Response regulator receiver domain GJQ55_12200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GJQ55_12200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GJQ55_12210 PF02622 Uncharacterized ACR, COG1678 GJQ55_12215 PF03652 Holliday junction resolvase GJQ55_12220 PF00156 Phosphoribosyl transferase domain GJQ55_12225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GJQ55_12225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GJQ55_12230 PF01979 Amidohydrolase family GJQ55_12235 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) GJQ55_12240 PF01467 Cytidylyltransferase-like GJQ55_12240 PF00294 pfkB family carbohydrate kinase GJQ55_12245 PF03279 Bacterial lipid A biosynthesis acyltransferase GJQ55_12255 PF00437 Type II/IV secretion system protein GJQ55_12255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GJQ55_12265 PF07687 Peptidase dimerisation domain GJQ55_12265 PF01546 Peptidase family M20/M25/M40 GJQ55_12270 PF00696 Amino acid kinase family GJQ55_12270 PF00583 Acetyltransferase (GNAT) family GJQ55_12290 PF00186 Dihydrofolate reductase GJQ55_12295 PF00303 Thymidylate synthase GJQ55_12300 PF01790 Prolipoprotein diacylglyceryl transferase GJQ55_12305 PF01925 Sulfite exporter TauE/SafE GJQ55_12315 PF03734 L,D-transpeptidase catalytic domain GJQ55_12320 PF05951 Bacterial protein of unknown function (DUF882) GJQ55_12325 PF01590 GAF domain GJQ55_12325 PF05524 PEP-utilising enzyme, N-terminal GJQ55_12325 PF00391 PEP-utilising enzyme, mobile domain GJQ55_12325 PF02896 PEP-utilising enzyme, TIM barrel domain GJQ55_12330 PF00293 NUDIX domain GJQ55_12345 PF10672 S-adenosylmethionine-dependent methyltransferase GJQ55_12345 PF17785 PUA-like domain GJQ55_12355 PF03480 Bacterial extracellular solute-binding protein, family 7 GJQ55_12360 PF00580 UvrD/REP helicase N-terminal domain GJQ55_12360 PF13361 UvrD-like helicase C-terminal domain GJQ55_12365 PF01418 Helix-turn-helix domain, rpiR family GJQ55_12365 PF01380 SIS domain GJQ55_12375 PF00909 Ammonium Transporter Family GJQ55_12380 PF00543 Nitrogen regulatory protein P-II GJQ55_12390 PF04380 Membrane fusogenic activity GJQ55_12400 PF03707 Bacterial signalling protein N terminal repeat GJQ55_12400 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_12400 PF00563 EAL domain GJQ55_12410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_12410 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_12410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJQ55_12435 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GJQ55_12435 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GJQ55_12440 PF02321 Outer membrane efflux protein GJQ55_12445 PF00293 NUDIX domain GJQ55_12455 PF00149 Calcineurin-like phosphoesterase GJQ55_12460 PF05728 Uncharacterised protein family (UPF0227) GJQ55_12465 PF01751 Toprim domain GJQ55_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_12465 PF00986 DNA gyrase B subunit, carboxyl terminus GJQ55_12465 PF00204 DNA gyrase B GJQ55_12470 PF03707 Bacterial signalling protein N terminal repeat GJQ55_12470 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_12470 PF00563 EAL domain GJQ55_12475 PF02678 Pirin GJQ55_12475 PF05726 Pirin C-terminal cupin domain GJQ55_12480 PF00521 DNA gyrase/topoisomerase IV, subunit A GJQ55_12480 PF03989 DNA gyrase C-terminal domain, beta-propeller GJQ55_12485 PF17284 Spermidine synthase tetramerisation domain GJQ55_12490 PF01295 Adenylate cyclase, class-I GJQ55_12490 PF12633 Adenylate cyclase NT domain GJQ55_12500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GJQ55_12500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GJQ55_12505 PF01678 Diaminopimelate epimerase GJQ55_12515 PF13419 Haloacid dehalogenase-like hydrolase GJQ55_12525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GJQ55_12530 PF01464 Transglycosylase SLT domain GJQ55_12530 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GJQ55_12535 PF00271 Helicase conserved C-terminal domain GJQ55_12535 PF00270 DEAD/DEAH box helicase GJQ55_12540 PF13617 YnbE-like lipoprotein GJQ55_12550 PF04011 LemA family GJQ55_12555 PF01435 Peptidase family M48 GJQ55_12560 PF04545 Sigma-70, region 4 GJQ55_12560 PF04542 Sigma-70 region 2 GJQ55_12560 PF00140 Sigma-70 factor, region 1.2 GJQ55_12565 PF18075 FtsX extracellular domain GJQ55_12570 PF00005 ABC transporter GJQ55_12575 PF00448 SRP54-type protein, GTPase domain GJQ55_12575 PF02881 SRP54-type protein, helical bundle domain GJQ55_12595 PF02909 Tetracyclin repressor-like, C-terminal domain GJQ55_12595 PF00440 Bacterial regulatory proteins, tetR family GJQ55_12600 PF00171 Aldehyde dehydrogenase family GJQ55_12610 PF00732 GMC oxidoreductase GJQ55_12610 PF05199 GMC oxidoreductase GJQ55_12615 PF01467 Cytidylyltransferase-like GJQ55_12620 PF00037 4Fe-4S binding domain GJQ55_12630 PF02698 DUF218 domain GJQ55_12640 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GJQ55_12640 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GJQ55_12640 PF06827 Zinc finger found in FPG and IleRS GJQ55_12645 PF00471 Ribosomal protein L33 GJQ55_12650 PF00830 Ribosomal L28 family GJQ55_12655 PF04002 RadC-like JAB domain GJQ55_12660 PF02441 Flavoprotein GJQ55_12660 PF04127 DNA / pantothenate metabolism flavoprotein GJQ55_12665 PF00692 dUTPase GJQ55_12670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJQ55_12670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJQ55_12670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJQ55_12670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJQ55_12675 PF00696 Amino acid kinase family GJQ55_12680 PF00440 Bacterial regulatory proteins, tetR family GJQ55_12690 PF00156 Phosphoribosyl transferase domain GJQ55_12700 PF03725 3' exoribonuclease family, domain 2 GJQ55_12700 PF01138 3' exoribonuclease family, domain 1 GJQ55_12705 PF08340 Domain of unknown function (DUF1732) GJQ55_12705 PF03755 YicC-like family, N-terminal region GJQ55_12710 PF00625 Guanylate kinase GJQ55_12715 PF01192 RNA polymerase Rpb6 GJQ55_12720 PF02824 TGS domain GJQ55_12720 PF04607 Region found in RelA / SpoT proteins GJQ55_12720 PF13291 ACT domain GJQ55_12725 PF01042 Endoribonuclease L-PSP GJQ55_12735 PF03466 LysR substrate binding domain GJQ55_12735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_12740 PF00270 DEAD/DEAH box helicase GJQ55_12740 PF00271 Helicase conserved C-terminal domain GJQ55_12740 PF17191 RecG wedge domain GJQ55_12755 PF01435 Peptidase family M48 GJQ55_12760 PF00593 TonB dependent receptor GJQ55_12760 PF07715 TonB-dependent Receptor Plug Domain GJQ55_12780 PF01636 Phosphotransferase enzyme family GJQ55_12790 PF01612 3'-5' exonuclease GJQ55_12790 PF00476 DNA polymerase family A GJQ55_12790 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GJQ55_12790 PF01367 5'-3' exonuclease, C-terminal SAM fold GJQ55_12800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJQ55_12800 PF18158 Adaptive response protein AidB N-terminal domain GJQ55_12800 PF02770 Acyl-CoA dehydrogenase, middle domain GJQ55_12805 PF03600 Citrate transporter GJQ55_12805 PF02080 TrkA-C domain GJQ55_12815 PF03600 Citrate transporter GJQ55_12815 PF02080 TrkA-C domain GJQ55_12825 PF00293 NUDIX domain GJQ55_12830 PF13419 Haloacid dehalogenase-like hydrolase GJQ55_12835 PF01479 S4 domain GJQ55_12840 PF01430 Hsp33 protein GJQ55_12845 PF01293 Phosphoenolpyruvate carboxykinase GJQ55_12915 PF00575 S1 RNA binding domain GJQ55_12915 PF09371 Tex-like protein N-terminal domain GJQ55_12915 PF16921 Tex protein YqgF-like domain GJQ55_12915 PF17674 HHH domain GJQ55_12925 PF04262 Glutamate-cysteine ligase GJQ55_12935 PF02600 Disulfide bond formation protein DsbB GJQ55_12940 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GJQ55_12970 PF00005 ABC transporter GJQ55_12970 PF12848 ABC transporter GJQ55_12980 PF03471 Transporter associated domain GJQ55_12980 PF00571 CBS domain GJQ55_12980 PF01595 Cyclin M transmembrane N-terminal domain GJQ55_12985 PF00005 ABC transporter GJQ55_12985 PF00664 ABC transporter transmembrane region GJQ55_12990 PF00005 ABC transporter GJQ55_12990 PF00664 ABC transporter transmembrane region GJQ55_13010 PF02390 Putative methyltransferase GJQ55_13015 PF04241 Protein of unknown function (DUF423) GJQ55_13020 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GJQ55_13025 PF00175 Oxidoreductase NAD-binding domain GJQ55_13030 PF00924 Mechanosensitive ion channel GJQ55_13030 PF05552 Conserved TM helix GJQ55_13035 PF13458 Periplasmic binding protein GJQ55_13045 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase GJQ55_13050 PF02602 Uroporphyrinogen-III synthase HemD GJQ55_13055 PF03900 Porphobilinogen deaminase, C-terminal domain GJQ55_13055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GJQ55_13060 PF04397 LytTr DNA-binding domain GJQ55_13060 PF00072 Response regulator receiver domain GJQ55_13065 PF07694 5TMR of 5TMR-LYT GJQ55_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_13065 PF06580 Histidine kinase GJQ55_13070 PF00206 Lyase GJQ55_13070 PF14698 Argininosuccinate lyase C-terminal GJQ55_13080 PF03707 Bacterial signalling protein N terminal repeat GJQ55_13080 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_13080 PF00563 EAL domain GJQ55_13090 PF03466 LysR substrate binding domain GJQ55_13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJQ55_13095 PF00563 EAL domain GJQ55_13095 PF03707 Bacterial signalling protein N terminal repeat GJQ55_13095 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_13105 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GJQ55_13105 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GJQ55_13110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJQ55_13110 PF02874 ATP synthase alpha/beta family, beta-barrel domain GJQ55_13115 PF00231 ATP synthase GJQ55_13120 PF02874 ATP synthase alpha/beta family, beta-barrel domain GJQ55_13120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJQ55_13120 PF00306 ATP synthase alpha/beta chain, C terminal domain GJQ55_13125 PF00213 ATP synthase delta (OSCP) subunit GJQ55_13130 PF00430 ATP synthase B/B' CF(0) GJQ55_13135 PF00137 ATP synthase subunit C GJQ55_13140 PF00119 ATP synthase A chain GJQ55_13150 PF02195 ParB-like nuclease domain GJQ55_13150 PF17762 HTH domain found in ParB protein GJQ55_13155 PF13614 AAA domain GJQ55_13160 PF02527 rRNA small subunit methyltransferase G GJQ55_13165 PF06779 Uncharacterised MFS-type transporter YbfB GJQ55_13180 PF00486 Transcriptional regulatory protein, C terminal GJQ55_13180 PF00072 Response regulator receiver domain GJQ55_13185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJQ55_13205 PF13932 GidA associated domain GJQ55_13205 PF01134 Glucose inhibited division protein A GJQ55_13230 PF01292 Prokaryotic cytochrome b561 GJQ55_13235 PF03707 Bacterial signalling protein N terminal repeat GJQ55_13235 PF00990 Diguanylate cyclase, GGDEF domain GJQ55_13235 PF00563 EAL domain GJQ55_13245 PF01926 50S ribosome-binding GTPase GJQ55_13245 PF12631 MnmE helical domain GJQ55_13245 PF10396 GTP-binding protein TrmE N-terminus GJQ55_13250 PF02096 60Kd inner membrane protein GJQ55_13250 PF14849 YidC periplasmic domain GJQ55_13255 PF01809 Putative membrane protein insertion efficiency factor GJQ55_13260 PF00825 Ribonuclease P GJQ55_13265 PF00468 Ribosomal protein L34