locus-tag	class	description
GJQ55_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_00010	COG0592	DNA-directed DNA polymerase activity
GJQ55_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
GJQ55_00035	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
GJQ55_00040	COG0751	glycine-tRNA ligase activity
GJQ55_00045	COG0752	glycyl-tRNA synthetase alpha subunit
GJQ55_00060	COG0745	RESPONSE REGULATOR receiver
GJQ55_00065	COG1560	Kdo2-lipid A biosynthetic process
GJQ55_00075	COG0589	response to stress
GJQ55_00080	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_00085	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GJQ55_00090	COG0569	domain protein
GJQ55_00100	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
GJQ55_00105	COG0242	peptide deformylase activity
GJQ55_00115	COG0758	DNA mediated transformation
GJQ55_00120	COG0009	L-threonylcarbamoyladenylate synthase
GJQ55_00125	COG0408	coproporphyrinogen oxidase activity
GJQ55_00130	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
GJQ55_00155	COG0217	transcriptional regulatory protein
GJQ55_00170	COG3609	addiction module antidote protein, CC2985 family
GJQ55_00180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
GJQ55_00185	COG0339	signal peptide processing
GJQ55_00210	COG0579	oxidoreductase
GJQ55_00230	COG2353	YceI-like domain
GJQ55_00235	COG3038	cytochrome b561
GJQ55_00240	COG0583	DNA-binding transcription factor activity
GJQ55_00250	COG1404	Belongs to the peptidase S8 family
GJQ55_00320	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GJQ55_00325	COG1349	DNA-binding transcription factor activity
GJQ55_00340	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJQ55_00355	COG0218	Necessary for normal cell division and for the maintenance of normal septation
GJQ55_00360	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GJQ55_00365	COG1121	(ABC) transporter
GJQ55_00370	COG0735	belongs to the Fur family
GJQ55_00375	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
GJQ55_00380	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GJQ55_00385	COG1346	cytolysis
GJQ55_00390	COG1380	Effector of murein hydrolase LrgA
GJQ55_00400	COG0628	permease
GJQ55_00405	COG0745	RESPONSE REGULATOR receiver
GJQ55_00415	COG0281	malic enzyme
GJQ55_00425	COG1217	gtp-binding protein TYPA
GJQ55_00445	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GJQ55_00470	COG0006	proline dipeptidase activity
GJQ55_00475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJQ55_00480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJQ55_00485	COG1607	acyl-coa hydrolase
GJQ55_00505	COG0573	inorganic phosphate transmembrane transporter activity
GJQ55_00510	COG0581	inorganic phosphate transmembrane transporter activity
GJQ55_00515	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GJQ55_00530	COG5002	protein histidine kinase activity
GJQ55_00555	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJQ55_00580	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
GJQ55_00585	COG3161	chorismate lyase activity
GJQ55_00615	COG1301	dicarboxylic acid transport
GJQ55_00640	COG2132	Multicopper oxidase
GJQ55_00660	COG2050	protein possibly involved in aromatic compounds catabolism
GJQ55_00670	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GJQ55_00675	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
GJQ55_00680	COG0204	Acyl-transferase
GJQ55_00685	COG2840	Smr protein MutS2
GJQ55_00700	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_00710	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJQ55_00715	COG2813	Specifically methylates the guanine in position
GJQ55_00715	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJQ55_00725	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
GJQ55_00730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GJQ55_00735	COG3642	lipopolysaccharide core region biosynthetic process
GJQ55_00740	COG0859	PFAM glycosyl transferase family 9
GJQ55_00750	COG0527	aspartate kinase activity
GJQ55_00755	COG1917	Cupin 2, conserved barrel domain protein
GJQ55_00790	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_00795	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_00800	COG0140	phosphoribosyl-ATP diphosphatase activity
GJQ55_00805	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
GJQ55_00810	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
GJQ55_00835	COG1073	alpha beta
GJQ55_00840	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_00845	COG1872	DUF167
GJQ55_00885	COG3639	organic phosphonate transmembrane transporter activity
GJQ55_00890	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJQ55_00895	COG1129	ABC transporter
GJQ55_00895	COG0842	Transport permease protein
GJQ55_00900	COG0842	Transport permease protein
GJQ55_00905	COG3901	Regulator of nitric oxide reductase transcription
GJQ55_00905	COG0348	domain, Protein
GJQ55_00910	COG4263	nitrous-oxide reductase activity
GJQ55_00925	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
GJQ55_00935	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_00945	COG1012	belongs to the aldehyde dehydrogenase family
GJQ55_00955	COG0604	alcohol dehydrogenase
GJQ55_00975	COG1283	sodium-dependent phosphate transmembrane transporter activity
GJQ55_00980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
GJQ55_00985	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
GJQ55_00985	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
GJQ55_00990	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
GJQ55_01015	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_01035	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
GJQ55_01040	COG0081	regulation of translation
GJQ55_01045	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GJQ55_01050	COG0222	ribosome binding
GJQ55_01055	COG0085	RNA polymerase activity
GJQ55_01065	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GJQ55_01070	COG0049	tRNA binding
GJQ55_01075	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GJQ55_01080	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_01085	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GJQ55_01090	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_01095	COG0051	transcription antitermination factor activity, RNA binding
GJQ55_01100	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
GJQ55_01105	COG0088	Forms part of the polypeptide exit tunnel
GJQ55_01110	COG0089	rRNA binding
GJQ55_01115	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
GJQ55_01120	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GJQ55_01125	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GJQ55_01130	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
GJQ55_01140	COG0255	Belongs to the universal ribosomal protein uL29 family
GJQ55_01145	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GJQ55_01150	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GJQ55_01155	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
GJQ55_01160	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GJQ55_01165	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GJQ55_01170	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GJQ55_01175	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
GJQ55_01180	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
GJQ55_01185	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GJQ55_01190	COG1841	ribosomal large subunit assembly
GJQ55_01195	COG0200	Binds to the 23S rRNA
GJQ55_01205	COG0257	Belongs to the bacterial ribosomal protein bL36 family
GJQ55_01210	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GJQ55_01215	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GJQ55_01220	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GJQ55_01225	COG0202	RNA polymerase activity
GJQ55_01230	COG0203	ribosomal protein L17
GJQ55_01255	COG2771	luxR family
GJQ55_01255	COG2200	EAL domain
GJQ55_01260	COG2204	response regulator
GJQ55_01270	COG1294	oxidase, subunit
GJQ55_01275	COG4890	Cyd operon protein YbgT
GJQ55_01280	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_01295	COG2111	Na H antiporter
GJQ55_01295	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GJQ55_01300	COG1006	Multisubunit Na H antiporter MnhC subunit
GJQ55_01305	COG0651	ATP synthesis coupled electron transport
GJQ55_01310	COG1863	multisubunit Na H antiporter MnhE subunit
GJQ55_01315	COG2212	antiporter activity
GJQ55_01320	COG1320	monovalent cation:proton antiporter activity
GJQ55_01330	COG2873	o-acetylhomoserine
GJQ55_01345	COG1385	rRNA (uridine-N3-)-methyltransferase activity
GJQ55_01355	COG1360	Flagellar Motor Protein
GJQ55_01360	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_01365	COG1722	exodeoxyribonuclease VII activity
GJQ55_01370	COG0142	geranyltranstransferase activity
GJQ55_01380	COG3852	Histidine kinase
GJQ55_01385	COG2204	response regulator
GJQ55_01390	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
GJQ55_01395	COG2738	Putative neutral zinc metallopeptidase
GJQ55_01405	COG0798	PFAM Bile acid sodium symporter
GJQ55_01410	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GJQ55_01420	COG1064	alcohol dehydrogenase
GJQ55_01445	COG0745	RESPONSE REGULATOR receiver
GJQ55_01465	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
GJQ55_01485	COG4181	ATPase activity
GJQ55_01490	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
GJQ55_01495	COG0523	cobalamin synthesis protein
GJQ55_01505	COG1597	lipid kinase activity
GJQ55_01540	COG2267	carboxylic ester hydrolase activity
GJQ55_01555	COG1238	metal cluster binding
GJQ55_01565	COG1187	pseudouridine synthase activity
GJQ55_01620	COG2267	carboxylic ester hydrolase activity
GJQ55_01635	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GJQ55_01650	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
GJQ55_01660	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
GJQ55_01675	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJQ55_01675	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJQ55_01680	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
GJQ55_01690	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
GJQ55_01700	COG0488	(ABC) transporter
GJQ55_01710	COG0179	Fumarylacetoacetate (FAA) hydrolase
GJQ55_01715	COG0629	single-stranded DNA binding
GJQ55_01720	COG2814	Major facilitator Superfamily
GJQ55_01725	COG2197	response regulator
GJQ55_01755	COG0560	Phosphoserine phosphatase
GJQ55_01755	COG3830	Belongs to the UPF0237 family
GJQ55_01770	COG0688	phosphatidylethanolamine metabolic process
GJQ55_01790	COG1360	Flagellar Motor Protein
GJQ55_01795	COG1162	GTPase activity
GJQ55_01815	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
GJQ55_01815	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
GJQ55_01820	COG0802	atpase or kinase
GJQ55_01830	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GJQ55_01835	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GJQ55_01840	COG1923	regulation of RNA biosynthetic process
GJQ55_01845	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GJQ55_01850	COG0330	HflC and HflK could
GJQ55_01855	COG0330	HflC and HflK could
GJQ55_01865	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
GJQ55_01870	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GJQ55_01880	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
GJQ55_01885	COG0235	Class ii aldolase
GJQ55_01890	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
GJQ55_01900	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
GJQ55_01905	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
GJQ55_01910	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GJQ55_01915	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GJQ55_01920	COG0617	tRNA 3'-terminal CCA addition
GJQ55_01935	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GJQ55_01950	COG1489	DNA binding
GJQ55_01955	COG0436	Aminotransferase
GJQ55_01970	COG4191	Histidine kinase
GJQ55_01995	COG0417	DNA replication proofreading
GJQ55_02005	COG3148	PFAM DTW domain containing protein
GJQ55_02015	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
GJQ55_02040	COG0793	Belongs to the peptidase S41A family
GJQ55_02045	COG4942	peptidase
GJQ55_02045	COG4942	peptidase
GJQ55_02050	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GJQ55_02055	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_02060	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
GJQ55_02065	COG2133	pyrroloquinoline quinone binding
GJQ55_02070	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
GJQ55_02080	COG2204	response regulator
GJQ55_02085	COG3852	Histidine kinase
GJQ55_02095	COG3094	Invasion gene expression up-regulator, SirB
GJQ55_02110	COG2119	membrane
GJQ55_02135	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
GJQ55_02155	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GJQ55_02160	COG0671	phosphoesterase, PA-phosphatase related
GJQ55_02210	COG0579	oxidoreductase
GJQ55_02240	COG0438	transferase activity, transferring glycosyl groups
GJQ55_02245	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
GJQ55_02250	COG2951	lytic endotransglycosylase activity
GJQ55_02255	COG0772	Belongs to the SEDS family
GJQ55_02260	COG0768	penicillin binding
GJQ55_02265	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
GJQ55_02280	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
GJQ55_02290	COG3300	MHYT domain
GJQ55_02290	COG5001	Diguanylate cyclase
GJQ55_02310	COG3012	SEC-C Motif Domain Protein
GJQ55_02325	COG1686	Belongs to the peptidase S11 family
GJQ55_02330	COG2921	Belongs to the UPF0250 family
GJQ55_02335	COG0321	lipoyl(octanoyl) transferase activity
GJQ55_02350	COG3118	belongs to the thioredoxin family
GJQ55_02360	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_02370	COG0142	geranyltranstransferase activity
GJQ55_02375	COG0261	This protein binds to 23S rRNA in the presence of protein L20
GJQ55_02385	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
GJQ55_02390	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
GJQ55_02395	COG2877	3-deoxy-8-phosphooctulonate synthase activity
GJQ55_02400	COG0268	Binds directly to 16S ribosomal RNA
GJQ55_02405	COG0728	peptidoglycan biosynthetic process
GJQ55_02410	COG0196	riboflavin kinase activity
GJQ55_02415	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GJQ55_02425	COG1047	Peptidyl-prolyl cis-trans
GJQ55_02430	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
GJQ55_02465	COG4968	Prepilin-type N-terminal cleavage methylation domain
GJQ55_02480	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJQ55_02480	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
GJQ55_02505	COG0028	Belongs to the TPP enzyme family
GJQ55_02520	COG1272	protein, Hemolysin III
GJQ55_02525	COG2827	Endonuclease containing a URI domain
GJQ55_02555	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GJQ55_02590	COG1611	Belongs to the LOG family
GJQ55_02595	COG2239	Acts as a magnesium transporter
GJQ55_02600	COG0004	ammonium transporteR
GJQ55_02610	COG0788	formyltetrahydrofolate deformylase activity
GJQ55_02615	COG0183	Belongs to the thiolase family
GJQ55_02635	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJQ55_02640	COG1040	competence protein
GJQ55_02645	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
GJQ55_02660	COG1960	acyl-CoA dehydrogenase activity
GJQ55_02665	COG1960	acyl-CoA dehydrogenase activity
GJQ55_02695	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GJQ55_02700	COG0134	indole-3-glycerol-phosphate synthase activity
GJQ55_02710	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
GJQ55_02720	COG3437	response regulator, receiver
GJQ55_02720	COG0784	Response regulator, receiver
GJQ55_02730	COG1765	OsmC-like protein
GJQ55_02735	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
GJQ55_02750	COG2813	Specifically methylates the guanine in position
GJQ55_02755	COG0789	Transcriptional regulator
GJQ55_02760	COG1366	Belongs to the anti-sigma-factor antagonist family
GJQ55_02780	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
GJQ55_02785	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GJQ55_02825	COG1466	dna polymerase III delta subunit
GJQ55_02830	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
GJQ55_02850	COG0840	transmembrane signaling receptor activity
GJQ55_02855	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
GJQ55_02860	COG2197	response regulator
GJQ55_02865	COG0583	DNA-binding transcription factor activity
GJQ55_02885	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
GJQ55_02900	COG4221	oxidoreductase activity
GJQ55_02915	COG0415	Belongs to the DNA photolyase family
GJQ55_02920	COG0789	Transcriptional regulator
GJQ55_02935	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
GJQ55_02940	COG1960	acyl-CoA dehydrogenase activity
GJQ55_02945	COG1090	epimerase
GJQ55_02965	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
GJQ55_02970	COG0069	glutamate synthase activity
GJQ55_02985	COG0840	transmembrane signaling receptor activity
GJQ55_02990	COG2096	Adenosyltransferase
GJQ55_03000	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
GJQ55_03005	COG1666	GTP binding
GJQ55_03015	COG1940	carbohydrate kinase activity
GJQ55_03030	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
GJQ55_03040	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
GJQ55_03050	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
GJQ55_03060	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
GJQ55_03065	COG3258	Cytochrome c
GJQ55_03080	COG0783	Belongs to the Dps family
GJQ55_03110	COG4191	Histidine kinase
GJQ55_03115	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
GJQ55_03120	COG0028	Belongs to the TPP enzyme family
GJQ55_03125	COG1304	FMN binding
GJQ55_03135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJQ55_03145	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
GJQ55_03150	COG0733	neurotransmitter:sodium symporter activity
GJQ55_03160	COG2914	Belongs to the UPF0125 (RnfH) family
GJQ55_03175	COG0497	DNA recombination
GJQ55_03180	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GJQ55_03185	COG0443	Heat shock 70 kDa protein
GJQ55_03190	COG0484	heat shock protein binding
GJQ55_03195	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
GJQ55_03220	COG1607	acyl-coa hydrolase
GJQ55_03225	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GJQ55_03240	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
GJQ55_03250	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GJQ55_03255	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_03260	COG0149	triose-phosphate isomerase activity
GJQ55_03275	COG0779	Required for maturation of 30S ribosomal subunits
GJQ55_03280	COG0195	Participates in both transcription termination and antitermination
GJQ55_03285	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GJQ55_03290	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
GJQ55_03295	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GJQ55_03305	COG1185	polyribonucleotide nucleotidyltransferase activity
GJQ55_03330	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GJQ55_03335	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
GJQ55_03355	COG3695	enzyme binding
GJQ55_03365	COG1804	L-carnitine dehydratase bile acid-inducible protein F
GJQ55_03370	COG1960	acyl-CoA dehydrogenase activity
GJQ55_03375	COG0183	Belongs to the thiolase family
GJQ55_03380	COG1024	Enoyl-CoA hydratase
GJQ55_03380	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJQ55_03385	COG3437	response regulator, receiver
GJQ55_03385	COG0784	Response regulator, receiver
GJQ55_03390	COG0840	transmembrane signaling receptor activity
GJQ55_03400	COG0193	aminoacyl-tRNA hydrolase activity
GJQ55_03405	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
GJQ55_03420	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
GJQ55_03425	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
GJQ55_03435	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
GJQ55_03440	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GJQ55_03445	COG2890	protein-(glutamine-N5) methyltransferase activity
GJQ55_03450	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJQ55_03460	COG0792	nuclease activity
GJQ55_03500	COG0500	methyltransferase
GJQ55_03510	COG2067	long-chain fatty acid transport protein
GJQ55_03570	COG0811	peptide transport
GJQ55_03575	COG0811	peptide transport
GJQ55_03580	COG0848	biopolymer transport protein
GJQ55_03585	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GJQ55_03605	COG2937	Belongs to the GPAT DAPAT family
GJQ55_03610	COG2900	Belongs to the SlyX family
GJQ55_03645	COG0105	UTP biosynthetic process
GJQ55_03650	COG0820	rRNA (adenine-C2-)-methyltransferase activity
GJQ55_03665	COG0124	histidyl-tRNA synthetase
GJQ55_03670	COG2976	Protein conserved in bacteria
GJQ55_03680	COG1160	GTP binding
GJQ55_03695	COG1024	Enoyl-CoA hydratase
GJQ55_03700	COG1960	acyl-CoA dehydrogenase activity
GJQ55_03710	COG2832	Protein of unknown function (DUF454)
GJQ55_03730	COG4771	TonB-dependent receptor
GJQ55_03755	COG0471	metal ion transport
GJQ55_03760	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJQ55_03760	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJQ55_03765	COG4536	flavin adenine dinucleotide binding
GJQ55_03775	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GJQ55_03780	COG2862	Uncharacterized protein family, UPF0114
GJQ55_03785	COG3781	membrane
GJQ55_03820	COG2193	ferroxidase activity
GJQ55_03840	COG2084	Dehydrogenase
GJQ55_03845	COG3622	Belongs to the hyi family
GJQ55_03850	COG3313	Fe-S protein
GJQ55_03860	COG3706	GGDEF domain
GJQ55_03865	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GJQ55_03870	COG0346	lactoylglutathione lyase activity
GJQ55_03890	COG2171	N-acyltransferase activity
GJQ55_03895	COG1393	Belongs to the ArsC family
GJQ55_03915	COG1918	ferrous iron import across plasma membrane
GJQ55_03915	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
GJQ55_03935	COG2264	protein methyltransferase activity
GJQ55_03940	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
GJQ55_03945	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GJQ55_03950	COG1192	Involved in chromosome partitioning
GJQ55_03955	COG0084	hydrolase, TatD family'
GJQ55_03970	COG0741	lytic transglycosylase activity
GJQ55_03975	COG2264	protein methyltransferase activity
GJQ55_03990	COG0776	regulation of translation
GJQ55_04005	COG0284	orotidine-5'-phosphate decarboxylase activity
GJQ55_04020	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_04030	COG0438	transferase activity, transferring glycosyl groups
GJQ55_04050	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
GJQ55_04060	COG0438	transferase activity, transferring glycosyl groups
GJQ55_04090	COG1210	Utp--glucose-1-phosphate uridylyltransferase
GJQ55_04120	COG1442	glycosyl transferase family 8
GJQ55_04120	COG1216	Glycosyl transferase, family 2
GJQ55_04145	COG1215	transferase activity, transferring glycosyl groups
GJQ55_04155	COG3039	Transposase
GJQ55_04170	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GJQ55_04205	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_04220	COG1024	Enoyl-CoA hydratase
GJQ55_04225	COG0583	DNA-binding transcription factor activity
GJQ55_04235	COG1741	Belongs to the pirin family
GJQ55_04255	COG0676	glucose-6-phosphate 1-epimerase activity
GJQ55_04265	COG0717	Belongs to the dCTP deaminase family
GJQ55_04290	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
GJQ55_04310	COG3243	poly(R)-hydroxyalkanoic acid synthase
GJQ55_04340	COG0582	viral genome integration into host DNA
GJQ55_04350	COG0789	Transcriptional regulator
GJQ55_04370	COG2132	Multicopper oxidase
GJQ55_04400	COG0745	RESPONSE REGULATOR receiver
GJQ55_04405	COG5002	protein histidine kinase activity
GJQ55_04410	COG0745	RESPONSE REGULATOR receiver
GJQ55_04475	COG2217	Heavy metal translocating P-type atpase
GJQ55_04500	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJQ55_04560	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
GJQ55_04575	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
GJQ55_04585	COG1793	dna ligase
GJQ55_04600	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJQ55_04630	COG0316	Belongs to the HesB IscA family
GJQ55_04635	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
GJQ55_04640	COG0719	Fe-S assembly protein
GJQ55_04645	COG0396	ATPase activity
GJQ55_04650	COG0719	Fe-S assembly protein
GJQ55_04665	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
GJQ55_04675	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GJQ55_04680	COG2252	PERMEase
GJQ55_04735	COG1393	Belongs to the ArsC family
GJQ55_04740	COG1295	ribonuclease BN
GJQ55_04755	COG0033	Phosphoglucomutase
GJQ55_04765	COG3112	Uncharacterised protein family (UPF0231)
GJQ55_04770	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GJQ55_04775	COG0418	dihydroorotase activity
GJQ55_04785	COG0137	argininosuccinate synthase activity
GJQ55_04790	COG1451	nucleotide metabolic process
GJQ55_04795	COG0583	DNA-binding transcription factor activity
GJQ55_04815	COG0840	transmembrane signaling receptor activity
GJQ55_04835	COG0300	oxidoreductase activity
GJQ55_04840	COG1025	Belongs to the peptidase M16 family
GJQ55_04850	COG0745	RESPONSE REGULATOR receiver
GJQ55_04875	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
GJQ55_04885	COG2203	Gaf domain
GJQ55_04885	COG3706	GGDEF domain
GJQ55_04885	COG4251	negative regulation of phosphorylation
GJQ55_04885	COG5001	Diguanylate cyclase
GJQ55_04890	COG0204	Acyl-transferase
GJQ55_04900	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GJQ55_04910	COG2992	FlgJ-related protein
GJQ55_04950	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
GJQ55_04955	COG0077	Prephenate dehydratase
GJQ55_04955	COG1605	Chorismate mutase
GJQ55_04960	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
GJQ55_04965	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
GJQ55_04970	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
GJQ55_04985	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GJQ55_04990	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GJQ55_05000	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_05005	COG0436	Aminotransferase
GJQ55_05010	COG0556	nucleotide-excision repair
GJQ55_05025	COG3154	lipid carrier protein
GJQ55_05030	COG0826	peptidase U32
GJQ55_05035	COG0826	peptidase U32
GJQ55_05070	COG3256	nitric oxide reductase
GJQ55_05075	COG2010	Cytochrome c
GJQ55_05080	COG0714	Associated with various cellular activities
GJQ55_05085	COG4771	TonB-dependent receptor
GJQ55_05110	COG3850	Histidine kinase
GJQ55_05115	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
GJQ55_05120	COG1140	nitrate reductase beta subunit
GJQ55_05125	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
GJQ55_05130	COG2181	nitrate reductase activity
GJQ55_05135	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_05145	COG2223	nitrite transmembrane transporter activity
GJQ55_05155	COG2223	nitrite transmembrane transporter activity
GJQ55_05180	COG0314	molybdopterin synthase activity
GJQ55_05185	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
GJQ55_05190	COG0315	cyclic pyranopterin monophosphate synthase activity
GJQ55_05195	COG0521	Mo-molybdopterin cofactor biosynthetic process
GJQ55_05200	COG0746	molybdenum cofactor guanylyltransferase activity
GJQ55_05205	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
GJQ55_05210	COG2197	response regulator
GJQ55_05225	COG3604	Transcriptional regulator
GJQ55_05235	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
GJQ55_05240	COG0521	Mo-molybdopterin cofactor biosynthetic process
GJQ55_05245	COG0693	protein deglycase activity
GJQ55_05260	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GJQ55_05265	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GJQ55_05270	COG0291	Belongs to the bacterial ribosomal protein bL35 family
GJQ55_05275	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GJQ55_05280	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GJQ55_05285	COG0072	phenylalanine-tRNA ligase activity
GJQ55_05290	COG0776	regulation of translation
GJQ55_05310	COG0577	efflux transmembrane transporter activity
GJQ55_05310	COG1136	(ABC) transporter
GJQ55_05315	COG0577	efflux transmembrane transporter activity
GJQ55_05315	COG1136	(ABC) transporter
GJQ55_05320	COG0577	efflux transmembrane transporter activity
GJQ55_05320	COG1136	(ABC) transporter
GJQ55_05330	COG3122	Protein conserved in bacteria
GJQ55_05340	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
GJQ55_05350	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_05355	COG1960	acyl-CoA dehydrogenase activity
GJQ55_05360	COG1960	acyl-CoA dehydrogenase activity
GJQ55_05370	COG3022	response to hydroperoxide
GJQ55_05385	COG2267	carboxylic ester hydrolase activity
GJQ55_05390	COG2925	Exonuclease
GJQ55_05395	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_05400	COG3174	membrane
GJQ55_05420	COG0668	transmembrane transport
GJQ55_05425	COG0730	response to heat
GJQ55_05430	COG0513	Belongs to the DEAD box helicase family
GJQ55_05435	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GJQ55_05440	COG1946	Acyl-CoA thioesterase
GJQ55_05460	COG0739	heme binding
GJQ55_05490	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GJQ55_05490	COG0519	Catalyzes the synthesis of GMP from XMP
GJQ55_05495	COG3093	addiction module antidote protein HigA
GJQ55_05520	COG1278	Cold shock
GJQ55_05530	COG3268	Saccharopine dehydrogenase
GJQ55_05540	COG0545	Peptidyl-prolyl cis-trans isomerase
GJQ55_05550	COG1054	Belongs to the UPF0176 family
GJQ55_05565	COG4660	Part of a membrane complex involved in electron transport
GJQ55_05570	COG4659	FMN binding
GJQ55_05575	COG4658	electron transport chain
GJQ55_05580	COG4656	Part of a membrane complex involved in electron transport
GJQ55_05585	COG2878	Part of a membrane complex involved in electron transport
GJQ55_05590	COG4657	Part of a membrane complex involved in electron transport
GJQ55_05600	COG0601	transmembrane transport
GJQ55_05605	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
GJQ55_05620	COG0489	protein tyrosine kinase activity
GJQ55_05625	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJQ55_05625	COG1902	pentaerythritol trinitrate reductase activity
GJQ55_05680	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
GJQ55_05685	COG0732	type I restriction modification DNA specificity domain
GJQ55_05700	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJQ55_05705	COG0741	lytic transglycosylase activity
GJQ55_05710	COG0442	prolyl-tRNA aminoacylation
GJQ55_05720	COG2818	Glycosylase
GJQ55_05750	COG0243	molybdopterin cofactor binding
GJQ55_05755	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_05765	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_05780	COG3707	response regulator
GJQ55_05785	COG1116	anion transmembrane transporter activity
GJQ55_05790	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
GJQ55_05795	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
GJQ55_05830	COG0686	Belongs to the AlaDH PNT family
GJQ55_05835	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
GJQ55_05840	COG1074	ATP-dependent DNA helicase activity
GJQ55_05845	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJQ55_05865	COG1944	ATP diphosphatase activity
GJQ55_05870	COG0439	Biotin carboxylase
GJQ55_05885	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
GJQ55_05890	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
GJQ55_05895	COG0784	Response regulator, receiver
GJQ55_05895	COG0835	chemotaxis
GJQ55_05900	COG0633	Ferredoxin
GJQ55_05900	COG3217	Mosc domain protein beta barrel domain protein
GJQ55_05905	COG2084	Dehydrogenase
GJQ55_05920	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
GJQ55_05925	COG1053	succinate dehydrogenase
GJQ55_05970	COG1131	(ABC) transporter
GJQ55_05975	COG0842	Transport permease protein
GJQ55_06000	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJQ55_06020	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
GJQ55_06025	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
GJQ55_06035	COG2850	peptidyl-arginine hydroxylation
GJQ55_06055	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
GJQ55_06070	COG3267	Type II secretory pathway component ExeA
GJQ55_06070	COG3409	Peptidoglycan-binding domain 1 protein
GJQ55_06080	COG1199	ATP-dependent helicase activity
GJQ55_06095	COG4591	ABC-type transport system involved in lipoprotein release permease component
GJQ55_06115	COG0811	peptide transport
GJQ55_06120	COG0848	biopolymer transport protein
GJQ55_06125	COG1132	(ABC) transporter
GJQ55_06130	COG1663	tetraacyldisaccharide 4'-kinase activity
GJQ55_06135	COG2835	tetraacyldisaccharide 4'-kinase activity
GJQ55_06140	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GJQ55_06150	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_06155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GJQ55_06160	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJQ55_06165	COG0215	cysteine-tRNA ligase activity
GJQ55_06195	COG0544	peptidyl-prolyl cis-trans isomerase activity
GJQ55_06200	COG0740	serine-type endopeptidase activity
GJQ55_06205	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
GJQ55_06210	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GJQ55_06220	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_06235	COG1388	LysM domain
GJQ55_06235	COG0741	lytic transglycosylase activity
GJQ55_06270	COG0640	Transcriptional regulator
GJQ55_06275	COG1477	protein flavinylation
GJQ55_06285	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GJQ55_06300	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
GJQ55_06310	COG2915	High frequency lysogenization protein hflD homolog
GJQ55_06335	COG1278	Cold shock
GJQ55_06340	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
GJQ55_06345	COG0542	response to heat
GJQ55_06350	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GJQ55_06355	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
GJQ55_06360	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
GJQ55_06370	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
GJQ55_06375	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GJQ55_06380	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GJQ55_06385	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GJQ55_06400	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GJQ55_06405	COG2920	part of a sulfur-relay system
GJQ55_06420	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
GJQ55_06430	COG0123	including yeast histone deacetylase and acetoin utilization protein
GJQ55_06440	COG2197	response regulator
GJQ55_06485	COG0560	Phosphoserine phosphatase
GJQ55_06525	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
GJQ55_06545	COG2186	Transcriptional regulator
GJQ55_06550	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
GJQ55_06555	COG0372	Belongs to the citrate synthase family
GJQ55_06570	COG2828	Protein conserved in bacteria
GJQ55_06580	COG1530	ribonuclease E activity
GJQ55_06590	COG0564	pseudouridine synthase activity
GJQ55_06595	COG0546	phosphoglycolate phosphatase activity
GJQ55_06600	COG0616	signal peptide processing
GJQ55_06605	COG1399	metal-binding, possibly nucleic acid-binding protein
GJQ55_06610	COG0333	Belongs to the bacterial ribosomal protein bL32 family
GJQ55_06615	COG0416	fatty acid biosynthetic process
GJQ55_06620	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
GJQ55_06630	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GJQ55_06635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
GJQ55_06640	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
GJQ55_06645	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
GJQ55_06650	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
GJQ55_06680	COG0811	peptide transport
GJQ55_06685	COG0811	peptide transport
GJQ55_06690	COG0848	biopolymer transport protein
GJQ55_06705	COG0708	Exodeoxyribonuclease III
GJQ55_06715	COG0301	tRNA thio-modification
GJQ55_06715	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_06730	COG1309	transcriptional regulator
GJQ55_06755	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GJQ55_06825	COG0316	Belongs to the HesB IscA family
GJQ55_06825	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
GJQ55_06835	COG0534	Mate efflux family protein
GJQ55_06840	COG0584	glycerophosphoryl diester phosphodiesterase
GJQ55_06845	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_06855	COG0616	signal peptide processing
GJQ55_06865	COG2853	Lipoprotein
GJQ55_06870	COG1643	Atp-dependent helicase
GJQ55_06875	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_06880	COG2267	carboxylic ester hydrolase activity
GJQ55_06885	COG2030	dehydratase
GJQ55_06945	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJQ55_06965	COG2983	Belongs to the UPF0260 family
GJQ55_06970	COG3100	YcgL domain-containing protein
GJQ55_06980	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
GJQ55_06985	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
GJQ55_06990	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GJQ55_07005	COG1067	ATP-dependent peptidase activity
GJQ55_07010	COG2198	Histidine kinase
GJQ55_07010	COG0784	Response regulator, receiver
GJQ55_07010	COG2205	protein histidine kinase activity
GJQ55_07040	COG0824	Thioesterase
GJQ55_07045	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GJQ55_07050	COG5265	(ABC) transporter
GJQ55_07080	COG0667	Aldo Keto reductase
GJQ55_07085	COG3118	belongs to the thioredoxin family
GJQ55_07105	COG0714	Associated with various cellular activities
GJQ55_07120	COG1286	toxin biosynthetic process
GJQ55_07130	COG0285	dihydrofolate synthase activity
GJQ55_07135	COG0159	tryptophan synthase activity
GJQ55_07140	COG0133	tryptophan synthase activity
GJQ55_07145	COG0135	phosphoribosylanthranilate isomerase activity
GJQ55_07150	COG0101	tRNA pseudouridine synthase activity
GJQ55_07165	COG0473	3-isopropylmalate dehydrogenase activity
GJQ55_07170	COG0066	3-isopropylmalate dehydratase activity
GJQ55_07175	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
GJQ55_07185	COG0589	response to stress
GJQ55_07205	COG2813	Specifically methylates the guanine in position
GJQ55_07220	COG0826	peptidase U32
GJQ55_07240	COG0406	alpha-ribazole phosphatase activity
GJQ55_07250	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
GJQ55_07260	COG0745	RESPONSE REGULATOR receiver
GJQ55_07280	COG3263	regulation of cellular component size
GJQ55_07320	COG1846	Transcriptional regulator
GJQ55_07325	COG0386	Belongs to the glutathione peroxidase family
GJQ55_07330	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GJQ55_07335	COG0436	Aminotransferase
GJQ55_07360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GJQ55_07365	COG0243	molybdopterin cofactor binding
GJQ55_07370	COG1049	propionate catabolic process, 2-methylcitrate cycle
GJQ55_07385	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_07390	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
GJQ55_07400	COG0204	Acyl-transferase
GJQ55_07405	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
GJQ55_07415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJQ55_07440	COG0189	ligase activity
GJQ55_07450	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GJQ55_07455	COG1187	pseudouridine synthase activity
GJQ55_07460	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
GJQ55_07465	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GJQ55_07470	COG1335	isochorismatase
GJQ55_07475	COG2837	iron assimilation
GJQ55_07480	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
GJQ55_07485	COG4977	sequence-specific DNA binding
GJQ55_07490	COG3228	Belongs to the MtfA family
GJQ55_07510	COG1598	PFAM Uncharacterised protein family UPF0150
GJQ55_07525	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJQ55_07555	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
GJQ55_07575	COG4771	TonB-dependent receptor
GJQ55_07585	COG3278	Belongs to the heme-copper respiratory oxidase family
GJQ55_07600	COG2010	Cytochrome c
GJQ55_07615	COG2217	Heavy metal translocating P-type atpase
GJQ55_07630	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GJQ55_07635	COG0037	tRNA processing
GJQ55_07645	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_07650	COG0484	heat shock protein binding
GJQ55_07670	COG2885	chlorophyll binding
GJQ55_07680	COG0271	Belongs to the BolA IbaG family
GJQ55_07695	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
GJQ55_07710	COG0640	Transcriptional regulator
GJQ55_07745	COG3706	GGDEF domain
GJQ55_07755	COG0302	gtp cyclohydrolase
GJQ55_07760	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJQ55_07775	COG1960	acyl-CoA dehydrogenase activity
GJQ55_07785	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_07790	COG3239	Fatty acid desaturase
GJQ55_07800	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GJQ55_07820	COG0789	Transcriptional regulator
GJQ55_07825	COG2203	Gaf domain
GJQ55_07825	COG4251	negative regulation of phosphorylation
GJQ55_07825	COG5001	Diguanylate cyclase
GJQ55_07825	COG3706	GGDEF domain
GJQ55_07830	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
GJQ55_07850	COG3323	Protein of unknown function (DUF1653)
GJQ55_07850	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GJQ55_07875	COG0564	pseudouridine synthase activity
GJQ55_07885	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJQ55_07910	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
GJQ55_07915	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GJQ55_07920	COG2226	methyltransferase
GJQ55_07935	COG0525	valine-tRNA ligase activity
GJQ55_07960	COG3384	dioxygenase
GJQ55_08025	COG1819	glycosyl
GJQ55_08060	COG0525	valine-tRNA ligase activity
GJQ55_08065	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
GJQ55_08085	COG0386	Belongs to the glutathione peroxidase family
GJQ55_08110	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
GJQ55_08125	COG1862	Preprotein translocase
GJQ55_08130	COG0343	queuine tRNA-ribosyltransferase activity
GJQ55_08135	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
GJQ55_08160	COG3290	protein histidine kinase activity
GJQ55_08160	COG0840	transmembrane signaling receptor activity
GJQ55_08165	COG2203	Gaf domain
GJQ55_08165	COG3706	GGDEF domain
GJQ55_08165	COG4251	negative regulation of phosphorylation
GJQ55_08165	COG5001	Diguanylate cyclase
GJQ55_08170	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GJQ55_08175	COG0300	oxidoreductase activity
GJQ55_08185	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
GJQ55_08190	COG2945	thiolester hydrolase activity
GJQ55_08195	COG0175	sulfate reduction
GJQ55_08210	COG3001	Fructosamine kinase
GJQ55_08215	COG0259	pyridoxamine-phosphate oxidase activity
GJQ55_08225	COG0795	lipopolysaccharide-transporting ATPase activity
GJQ55_08230	COG0795	lipopolysaccharide-transporting ATPase activity
GJQ55_08235	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GJQ55_08240	COG0778	Nitroreductase
GJQ55_08255	COG0300	oxidoreductase activity
GJQ55_08270	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
GJQ55_08285	COG1805	sodium ion transport
GJQ55_08290	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
GJQ55_08300	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GJQ55_08330	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GJQ55_08355	COG0326	Molecular chaperone. Has ATPase activity
GJQ55_08360	COG0352	thiamine-phosphate diphosphorylase activity
GJQ55_08365	COG2022	thiamine diphosphate biosynthetic process
GJQ55_08380	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
GJQ55_08415	COG0800	Aldolase
GJQ55_08425	COG0363	glucosamine-6-phosphate deaminase activity
GJQ55_08440	COG0545	Peptidyl-prolyl cis-trans isomerase
GJQ55_08460	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GJQ55_08465	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GJQ55_08475	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GJQ55_08485	COG0425	Belongs to the sulfur carrier protein TusA family
GJQ55_08490	COG4783	chaperone-mediated protein folding
GJQ55_08495	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
GJQ55_08510	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
GJQ55_08520	COG0823	Involved in the tonB-independent uptake of proteins
GJQ55_08540	COG0824	Thioesterase
GJQ55_08545	COG2255	four-way junction helicase activity
GJQ55_08550	COG0632	four-way junction helicase activity
GJQ55_08575	COG0583	DNA-binding transcription factor activity
GJQ55_08585	COG0793	Belongs to the peptidase S41A family
GJQ55_08590	COG0425	Belongs to the sulfur carrier protein TusA family
GJQ55_08595	COG0183	Belongs to the thiolase family
GJQ55_08600	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_08625	COG1643	Atp-dependent helicase
GJQ55_08640	COG0307	riboflavin synthase, alpha
GJQ55_08670	COG3130	regulation of translation
GJQ55_08690	COG0714	Associated with various cellular activities
GJQ55_08705	COG2304	oxidoreductase activity
GJQ55_08720	COG1858	cytochrome C peroxidase
GJQ55_08725	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GJQ55_08730	COG3115	cell septum assembly
GJQ55_08730	COG3115	cell septum assembly
GJQ55_08750	COG2860	membrane
GJQ55_08755	COG0840	transmembrane signaling receptor activity
GJQ55_08770	COG0183	Belongs to the thiolase family
GJQ55_08775	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJQ55_08775	COG1024	Enoyl-CoA hydratase
GJQ55_08790	COG0488	(ABC) transporter
GJQ55_08860	COG0308	aminopeptidase N
GJQ55_08875	COG0705	Rhomboid family
GJQ55_08880	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GJQ55_08885	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GJQ55_08940	COG2169	Transcriptional regulator
GJQ55_08945	COG0429	hydrolase of the alpha beta-hydrolase fold
GJQ55_08955	COG0681	Belongs to the peptidase S26 family
GJQ55_08970	COG2095	MarC family integral membrane protein
GJQ55_08985	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GJQ55_09005	COG2198	Histidine kinase
GJQ55_09005	COG2205	protein histidine kinase activity
GJQ55_09005	COG0784	Response regulator, receiver
GJQ55_09015	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
GJQ55_09040	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GJQ55_09045	COG1138	Cytochrome C-type biogenesis protein
GJQ55_09050	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
GJQ55_09065	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
GJQ55_09070	COG4133	protoheme IX ABC transporter activity
GJQ55_09080	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_09090	COG1285	pathogenesis
GJQ55_09095	COG0402	S-adenosylhomocysteine deaminase activity
GJQ55_09110	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_09125	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
GJQ55_09140	COG0009	L-threonylcarbamoyladenylate synthase
GJQ55_09145	COG0613	PHP domain protein
GJQ55_09150	COG2350	Protein conserved in bacteria
GJQ55_09160	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GJQ55_09170	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
GJQ55_09170	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GJQ55_09195	COG0633	Ferredoxin
GJQ55_09195	COG0543	2 iron, 2 sulfur cluster binding
GJQ55_09205	COG2081	HI0933 family
GJQ55_09215	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GJQ55_09220	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_09225	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_09255	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GJQ55_09260	COG0575	Belongs to the CDS family
GJQ55_09265	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GJQ55_09270	COG0233	cytoplasmic translational termination
GJQ55_09275	COG0528	UMP kinase activity
GJQ55_09280	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
GJQ55_09285	COG0052	Belongs to the universal ribosomal protein uS2 family
GJQ55_09290	COG0024	Methionine aminopeptidase
GJQ55_09295	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
GJQ55_09300	COG1741	Belongs to the pirin family
GJQ55_09305	COG0513	Belongs to the DEAD box helicase family
GJQ55_09325	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
GJQ55_09330	COG0602	queuosine metabolic process
GJQ55_09335	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_09335	COG3321	synthase
GJQ55_09335	COG0604	alcohol dehydrogenase
GJQ55_09345	COG3085	chromosome segregation
GJQ55_09350	COG0189	ligase activity
GJQ55_09350	COG4067	protein conserved in archaea
GJQ55_09355	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
GJQ55_09370	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
GJQ55_09375	COG0583	DNA-binding transcription factor activity
GJQ55_09380	COG2205	protein histidine kinase activity
GJQ55_09385	COG0745	RESPONSE REGULATOR receiver
GJQ55_09390	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GJQ55_09400	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJQ55_09410	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GJQ55_09440	COG0835	chemotaxis
GJQ55_09450	COG1192	Involved in chromosome partitioning
GJQ55_09460	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_09470	COG0643	Histidine kinase
GJQ55_09470	COG2198	Histidine kinase
GJQ55_09470	COG0784	Response regulator, receiver
GJQ55_09500	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_09505	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_09515	COG1987	bacterial-type flagellum assembly
GJQ55_09580	COG1677	Flagellar hook-basal body complex protein FliE
GJQ55_09610	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GJQ55_09615	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
GJQ55_09680	COG1706	bacterial-type flagellum-dependent cell motility
GJQ55_09685	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
GJQ55_09690	COG4786	Flagellar basal body rod
GJQ55_09695	COG4787	bacterial-type flagellum-dependent cell motility
GJQ55_09705	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
GJQ55_09715	COG1815	bacterial-type flagellum-dependent cell motility
GJQ55_09725	COG0784	Response regulator, receiver
GJQ55_09725	COG0835	chemotaxis
GJQ55_09745	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
GJQ55_09770	COG0393	Putative heavy-metal-binding
GJQ55_09780	COG4783	chaperone-mediated protein folding
GJQ55_09785	COG0492	ferredoxin-NADP+ reductase activity
GJQ55_09810	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
GJQ55_09825	COG0564	pseudouridine synthase activity
GJQ55_09830	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJQ55_09835	COG0335	large ribosomal subunit rRNA binding
GJQ55_09840	COG0336	Belongs to the RNA methyltransferase TrmD family
GJQ55_09845	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GJQ55_09850	COG0228	four-way junction DNA binding
GJQ55_09855	COG1283	sodium-dependent phosphate transmembrane transporter activity
GJQ55_09895	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GJQ55_09895	COG0047	phosphoribosylformylglycinamidine synthase activity
GJQ55_09900	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GJQ55_09915	COG0023	Translation Initiation Factor
GJQ55_09920	COG4191	Histidine kinase
GJQ55_09920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GJQ55_09925	COG1522	sequence-specific DNA binding
GJQ55_09930	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GJQ55_09935	COG0210	DNA helicase
GJQ55_09945	COG0625	glutathione transferase activity
GJQ55_09955	COG4191	Histidine kinase
GJQ55_09955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GJQ55_09960	COG3123	guanosine phosphorylase activity
GJQ55_09970	COG3530	Putative quorum-sensing-regulated virulence factor
GJQ55_09975	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GJQ55_09975	COG0519	Catalyzes the synthesis of GMP from XMP
GJQ55_10000	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
GJQ55_10015	COG1968	undecaprenyl-diphosphatase activity
GJQ55_10020	COG1214	PFAM Peptidase M22, glycoprotease
GJQ55_10030	COG0563	adenylate kinase activity
GJQ55_10035	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
GJQ55_10040	COG3956	TIGRFAM MazG family protein
GJQ55_10045	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJQ55_10050	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GJQ55_10060	COG2205	protein histidine kinase activity
GJQ55_10060	COG0784	Response regulator, receiver
GJQ55_10060	COG5002	protein histidine kinase activity
GJQ55_10065	COG0736	holo-[acyl-carrier-protein] synthase activity
GJQ55_10075	COG1381	Involved in DNA repair and RecF pathway recombination
GJQ55_10080	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
GJQ55_10085	COG0571	ribonuclease III activity
GJQ55_10095	COG0481	GTPase activity
GJQ55_10100	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJQ55_10150	COG1024	Enoyl-CoA hydratase
GJQ55_10160	COG0596	Alpha beta hydrolase
GJQ55_10170	COG0488	(ABC) transporter
GJQ55_10200	COG0189	ligase activity
GJQ55_10210	COG0084	hydrolase, TatD family'
GJQ55_10220	COG0513	Belongs to the DEAD box helicase family
GJQ55_10225	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_10230	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GJQ55_10250	COG4628	conserved protein (DUF2132)
GJQ55_10280	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
GJQ55_10305	COG1132	(ABC) transporter
GJQ55_10310	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_10320	COG0705	Rhomboid family
GJQ55_10325	COG1024	Enoyl-CoA hydratase
GJQ55_10330	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
GJQ55_10335	COG2814	Major facilitator Superfamily
GJQ55_10340	COG1309	transcriptional regulator
GJQ55_10360	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GJQ55_10365	COG1702	phosphate starvation-inducible protein PhoH
GJQ55_10375	COG4535	Mg2 and Co2 transporter CorC
GJQ55_10380	COG0815	Transfers the fatty acyl group on membrane lipoproteins
GJQ55_10390	COG0494	nUDIX hydrolase
GJQ55_10395	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
GJQ55_10400	COG0653	protein targeting
GJQ55_10405	COG0739	heme binding
GJQ55_10425	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
GJQ55_10430	COG1181	Belongs to the D-alanine--D-alanine ligase family
GJQ55_10435	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GJQ55_10440	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
GJQ55_10445	COG0772	Belongs to the SEDS family
GJQ55_10450	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
GJQ55_10455	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GJQ55_10460	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GJQ55_10465	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GJQ55_10475	COG3116	cell division
GJQ55_10480	COG0275	rRNA processing
GJQ55_10505	COG0450	alkyl hydroperoxide reductase
GJQ55_10525	COG1309	transcriptional regulator
GJQ55_10530	COG0509	glycine decarboxylation via glycine cleavage system
GJQ55_10545	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
GJQ55_10550	COG0579	oxidoreductase
GJQ55_10555	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
GJQ55_10565	COG3630	sodium ion export across plasma membrane
GJQ55_10580	COG0625	glutathione transferase activity
GJQ55_10585	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GJQ55_10590	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_10595	COG2226	methyltransferase
GJQ55_10600	COG1322	Protein conserved in bacteria
GJQ55_10615	COG3023	N-Acetylmuramoyl-L-alanine amidase
GJQ55_10620	COG1115	amino acid carrier protein
GJQ55_10650	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
GJQ55_10655	COG0237	dephospho-CoA kinase activity
GJQ55_10660	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
GJQ55_10685	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
GJQ55_10690	COG2264	protein methyltransferase activity
GJQ55_10700	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GJQ55_10710	COG0138	bifunctional purine biosynthesis protein purh
GJQ55_10715	COG0151	Belongs to the GarS family
GJQ55_10720	COG0784	Response regulator, receiver
GJQ55_10720	COG5002	protein histidine kinase activity
GJQ55_10725	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJQ55_10730	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
GJQ55_10740	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
GJQ55_10745	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
GJQ55_10750	COG3178	'Phosphotransferase
GJQ55_10755	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
GJQ55_10760	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_10765	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
GJQ55_10770	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
GJQ55_10775	COG2967	ApaG domain
GJQ55_10780	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GJQ55_10785	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_10810	COG0617	tRNA 3'-terminal CCA addition
GJQ55_10815	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GJQ55_10815	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GJQ55_10820	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GJQ55_10825	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
GJQ55_10830	COG0828	Belongs to the bacterial ribosomal protein bS21 family
GJQ55_10835	COG1610	YqeY-like protein
GJQ55_10840	COG0358	DNA primase activity
GJQ55_10865	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
GJQ55_10890	COG0697	spore germination
GJQ55_10895	COG1280	lysine exporter protein (LysE YggA)
GJQ55_10925	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_10950	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
GJQ55_10955	COG0527	aspartate kinase activity
GJQ55_10960	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GJQ55_10980	COG0596	Alpha beta hydrolase
GJQ55_10985	COG1252	NADH dehydrogenase
GJQ55_10990	COG2137	regulation of response to DNA damage stimulus
GJQ55_10995	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
GJQ55_11000	COG1546	Belongs to the CinA family
GJQ55_11005	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
GJQ55_11010	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GJQ55_11030	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
GJQ55_11035	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
GJQ55_11040	COG0585	pseudouridine synthase activity
GJQ55_11045	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GJQ55_11050	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
GJQ55_11065	COG0504	CTP synthase activity
GJQ55_11075	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_11090	COG0840	transmembrane signaling receptor activity
GJQ55_11100	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GJQ55_11105	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJQ55_11115	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
GJQ55_11120	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
GJQ55_11125	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GJQ55_11130	COG5007	Belongs to the BolA IbaG family
GJQ55_11140	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
GJQ55_11145	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GJQ55_11150	COG1127	ABC transporter
GJQ55_11170	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
GJQ55_11175	COG1137	ATPase activity
GJQ55_11195	COG1660	Displays ATPase and GTPase activities
GJQ55_11205	COG2239	Acts as a magnesium transporter
GJQ55_11215	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJQ55_11225	COG1530	ribonuclease E activity
GJQ55_11230	COG0424	maF-like protein
GJQ55_11240	COG1792	Involved in formation and maintenance of cell shape
GJQ55_11245	COG1077	Cell shape determining protein MreB Mrl
GJQ55_11250	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJQ55_11255	COG0154	amidase activity
GJQ55_11260	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJQ55_11270	COG2969	positive regulation of protein catabolic process
GJQ55_11275	COG0625	glutathione transferase activity
GJQ55_11280	COG2857	Cytochrome c1
GJQ55_11285	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
GJQ55_11290	COG0723	plastoquinol--plastocyanin reductase activity
GJQ55_11295	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GJQ55_11310	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GJQ55_11320	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
GJQ55_11330	COG0456	acetyltransferase
GJQ55_11340	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GJQ55_11350	COG1477	protein flavinylation
GJQ55_11360	COG0018	arginyl-trna synthetase
GJQ55_11365	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
GJQ55_11380	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
GJQ55_11385	COG1687	branched-chain amino acid
GJQ55_11395	COG0129	dihydroxy-acid dehydratase activity
GJQ55_11400	COG1119	ATPase activity
GJQ55_11405	COG0537	adenosine 5'-monophosphoramidase activity
GJQ55_11425	COG1183	phosphatidylcholine synthase activity
GJQ55_11435	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
GJQ55_11440	COG2200	EAL domain
GJQ55_11450	COG2166	iron-sulfur cluster assembly
GJQ55_11455	COG0840	transmembrane signaling receptor activity
GJQ55_11460	COG0577	efflux transmembrane transporter activity
GJQ55_11460	COG1136	(ABC) transporter
GJQ55_11465	COG1136	(ABC) transporter
GJQ55_11465	COG0577	efflux transmembrane transporter activity
GJQ55_11485	COG0126	phosphoglycerate kinase activity
GJQ55_11495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
GJQ55_11505	COG0252	asparaginase activity
GJQ55_11510	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
GJQ55_11525	COG0564	pseudouridine synthase activity
GJQ55_11550	COG4115	mRNA cleavage
GJQ55_11555	COG2161	toxin-antitoxin pair type II binding
GJQ55_11560	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
GJQ55_11565	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJQ55_11575	COG0583	DNA-binding transcription factor activity
GJQ55_11585	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GJQ55_11590	COG0730	response to heat
GJQ55_11610	COG0826	peptidase U32
GJQ55_11625	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GJQ55_11630	COG2315	Protein conserved in bacteria
GJQ55_11665	COG0305	Participates in initiation and elongation during chromosome replication
GJQ55_11670	COG0359	binds to the 23S rRNA
GJQ55_11680	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GJQ55_11685	COG0360	Binds together with S18 to 16S ribosomal RNA
GJQ55_11700	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GJQ55_11705	COG0288	reversible hydration of carbon dioxide
GJQ55_11715	COG0439	Biotin carboxylase
GJQ55_11725	COG3634	alkyl hydroperoxide reductase activity
GJQ55_11730	COG0450	alkyl hydroperoxide reductase
GJQ55_11740	COG0557	exoribonuclease II activity
GJQ55_11750	COG0840	transmembrane signaling receptor activity
GJQ55_11755	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
GJQ55_11760	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
GJQ55_11765	COG1047	Peptidyl-prolyl cis-trans
GJQ55_11785	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJQ55_11795	COG0254	rRNA binding
GJQ55_11800	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GJQ55_11805	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
GJQ55_11810	COG1309	transcriptional regulator
GJQ55_11820	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
GJQ55_11830	COG0493	'glutamate synthase
GJQ55_11835	COG0070	glutamate synthase
GJQ55_11835	COG0069	glutamate synthase activity
GJQ55_11835	COG0067	glutamate synthase
GJQ55_11845	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
GJQ55_11850	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
GJQ55_11885	COG0277	FAD linked oxidase domain protein
GJQ55_11890	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GJQ55_11895	COG0107	imidazoleglycerol-phosphate synthase activity
GJQ55_11900	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
GJQ55_11910	COG0131	Imidazoleglycerol-phosphate dehydratase
GJQ55_11930	COG1194	a g-specific adenine glycosylase
GJQ55_11935	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
GJQ55_11975	COG0739	heme binding
GJQ55_11985	COG0316	Belongs to the HesB IscA family
GJQ55_12000	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
GJQ55_12010	COG1981	membrane
GJQ55_12015	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
GJQ55_12035	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GJQ55_12040	COG1757	Na H antiporter
GJQ55_12055	COG0121	glutamine amidotransferase
GJQ55_12075	COG1785	Belongs to the alkaline phosphatase family
GJQ55_12080	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GJQ55_12085	COG1305	Transglutaminase-like
GJQ55_12095	COG0714	Associated with various cellular activities
GJQ55_12100	COG0640	Transcriptional regulator
GJQ55_12105	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GJQ55_12115	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
GJQ55_12120	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
GJQ55_12135	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_12145	COG0463	Glycosyl transferase, family 2
GJQ55_12155	COG3307	-O-antigen
GJQ55_12165	COG2201	protein-glutamate methylesterase activity
GJQ55_12170	COG0784	Response regulator, receiver
GJQ55_12170	COG2198	Histidine kinase
GJQ55_12170	COG0643	Histidine kinase
GJQ55_12175	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
GJQ55_12180	COG0840	transmembrane signaling receptor activity
GJQ55_12200	COG0189	ligase activity
GJQ55_12210	COG1678	Uncharacterized ACR, COG1678
GJQ55_12215	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
GJQ55_12220	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
GJQ55_12225	COG0540	Belongs to the ATCase OTCase family
GJQ55_12235	COG1519	Transferase
GJQ55_12240	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
GJQ55_12240	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
GJQ55_12245	COG1560	Kdo2-lipid A biosynthetic process
GJQ55_12255	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
GJQ55_12270	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
GJQ55_12270	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJQ55_12290	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
GJQ55_12295	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
GJQ55_12305	COG0730	response to heat
GJQ55_12315	COG2989	Protein conserved in bacteria
GJQ55_12320	COG3108	Peptidase M15
GJQ55_12325	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
GJQ55_12330	COG0494	nUDIX hydrolase
GJQ55_12355	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GJQ55_12360	COG0210	DNA helicase
GJQ55_12375	COG0004	ammonium transporteR
GJQ55_12380	COG0347	Belongs to the P(II) protein family
GJQ55_12410	COG1960	acyl-CoA dehydrogenase activity
GJQ55_12415	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_12430	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_12435	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
GJQ55_12440	COG1538	Outer membrane efflux protein
GJQ55_12445	COG0494	nUDIX hydrolase
GJQ55_12455	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
GJQ55_12460	COG3150	esterase
GJQ55_12475	COG1741	Belongs to the pirin family
GJQ55_12505	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
GJQ55_12515	COG1011	Hydrolase
GJQ55_12535	COG0513	Belongs to the DEAD box helicase family
GJQ55_12550	COG1704	LemA family
GJQ55_12555	COG0501	Belongs to the peptidase M48B family
GJQ55_12565	COG2177	Part of the ABC transporter FtsEX involved in
GJQ55_12570	COG2884	Cell division ATP-binding protein ftsE
GJQ55_12575	COG0552	protein localization to endoplasmic reticulum
GJQ55_12585	COG0742	ribosomal rna small subunit methyltransferase
GJQ55_12610	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
GJQ55_12615	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GJQ55_12620	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GJQ55_12625	COG0405	Gamma-glutamyltransferase
GJQ55_12630	COG1434	Gram-negative-bacterium-type cell wall biogenesis
GJQ55_12645	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GJQ55_12650	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GJQ55_12655	COG2003	Belongs to the UPF0758 family
GJQ55_12665	COG0756	dUTP diphosphatase activity
GJQ55_12675	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJQ55_12680	COG1309	transcriptional regulator
GJQ55_12690	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GJQ55_12700	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
GJQ55_12705	COG1561	YicC-like family, N-terminal region
GJQ55_12715	COG1758	RNA polymerase activity
GJQ55_12720	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJQ55_12735	COG0583	DNA-binding transcription factor activity
GJQ55_12740	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GJQ55_12755	COG0501	Belongs to the peptidase M48B family
GJQ55_12760	COG4774	siderophore transport
GJQ55_12780	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJQ55_12800	COG1960	acyl-CoA dehydrogenase activity
GJQ55_12805	COG0471	metal ion transport
GJQ55_12805	COG3273	potassium ion transport
GJQ55_12815	COG0471	metal ion transport
GJQ55_12815	COG3273	potassium ion transport
GJQ55_12825	COG0494	nUDIX hydrolase
GJQ55_12830	COG1011	Hydrolase
GJQ55_12835	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
GJQ55_12840	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
GJQ55_12845	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
GJQ55_12915	COG2183	response to ionizing radiation
GJQ55_12925	COG2918	glutathione biosynthetic process
GJQ55_12935	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
GJQ55_12970	COG0488	(ABC) transporter
GJQ55_12980	COG1253	flavin adenine dinucleotide binding
GJQ55_12985	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
GJQ55_12990	COG4988	ABC transporter
GJQ55_13010	COG0220	tRNA (guanine-N7-)-methyltransferase activity
GJQ55_13015	COG2363	Small membrane protein
GJQ55_13020	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
GJQ55_13030	COG0668	transmembrane transport
GJQ55_13045	COG2959	enzyme of heme biosynthesis
GJQ55_13055	COG0181	hydroxymethylbilane synthase activity
GJQ55_13065	COG3275	phosphorelay sensor kinase activity
GJQ55_13070	COG0165	Argininosuccinate lyase
GJQ55_13080	COG3300	MHYT domain
GJQ55_13080	COG5001	Diguanylate cyclase
GJQ55_13105	COG0355	proton-transporting ATP synthase activity, rotational mechanism
GJQ55_13110	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GJQ55_13115	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GJQ55_13120	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GJQ55_13130	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
GJQ55_13140	COG0356	it plays a direct role in the translocation of protons across the membrane
GJQ55_13150	COG1475	DNA binding
GJQ55_13155	COG1192	Involved in chromosome partitioning
GJQ55_13165	COG0477	Major facilitator Superfamily
GJQ55_13205	COG0445	tRNA wobble uridine modification
GJQ55_13230	COG3038	cytochrome b561
GJQ55_13245	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GJQ55_13250	COG0706	membrane insertase activity
GJQ55_13255	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
GJQ55_13260	COG0594	ribonuclease P activity
GJQ55_13265	COG0230	Belongs to the bacterial ribosomal protein bL34 family