locus-tag class description GAY96_00005 PF00308 Bacterial dnaA protein GAY96_00005 PF08299 Bacterial dnaA protein helix-turn-helix GAY96_00005 PF11638 DnaA N-terminal domain GAY96_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain GAY96_00010 PF02767 DNA polymerase III beta subunit, central domain GAY96_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain GAY96_00015 PF02463 RecF/RecN/SMC N terminal domain GAY96_00020 PF01751 Toprim domain GAY96_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_00020 PF18053 DNA gyrase B subunit insert domain GAY96_00020 PF00986 DNA gyrase B subunit, carboxyl terminus GAY96_00020 PF00204 DNA gyrase B GAY96_00035 PF05746 DALR anticodon binding domain GAY96_00035 PF02092 Glycyl-tRNA synthetase beta subunit GAY96_00040 PF02091 Glycyl-tRNA synthetase alpha subunit GAY96_00045 PF02028 BCCT, betaine/carnitine/choline family transporter GAY96_00055 PF00072 Response regulator receiver domain GAY96_00060 PF03279 Bacterial lipid A biosynthesis acyltransferase GAY96_00065 PF02080 TrkA-C domain GAY96_00065 PF00999 Sodium/hydrogen exchanger family GAY96_00065 PF03471 Transporter associated domain GAY96_00070 PF00582 Universal stress protein family GAY96_00075 PF01740 STAS domain GAY96_00075 PF00916 Sulfate permease family GAY96_00080 PF02386 Cation transport protein GAY96_00085 PF02080 TrkA-C domain GAY96_00085 PF02254 TrkA-N domain GAY96_00090 PF01189 16S rRNA methyltransferase RsmB/F GAY96_00090 PF01029 NusB family GAY96_00095 PF00551 Formyl transferase GAY96_00095 PF02911 Formyl transferase, C-terminal domain GAY96_00100 PF01327 Polypeptide deformylase GAY96_00110 PF02481 DNA recombination-mediator protein A GAY96_00110 PF17782 DprA winged helix domain GAY96_00115 PF01300 Telomere recombination GAY96_00120 PF01218 Coproporphyrinogen III oxidase GAY96_00125 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GAY96_00125 PF01488 Shikimate / quinate 5-dehydrogenase GAY96_00125 PF08501 Shikimate dehydrogenase substrate binding domain GAY96_00150 PF01709 Transcriptional regulator GAY96_00165 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH GAY96_00175 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_00180 PF01432 Peptidase family M3 GAY96_00205 PF06039 Malate:quinone oxidoreductase (Mqo) GAY96_00210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GAY96_00210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GAY96_00210 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GAY96_00215 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GAY96_00220 PF02233 NAD(P) transhydrogenase beta subunit GAY96_00225 PF04264 YceI-like domain GAY96_00230 PF01292 Prokaryotic cytochrome b561 GAY96_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_00235 PF03466 LysR substrate binding domain GAY96_00240 PF02630 SCO1/SenC GAY96_00245 PF04151 Bacterial pre-peptidase C-terminal domain GAY96_00245 PF00082 Subtilase family GAY96_00250 PF13335 Magnesium chelatase, subunit ChlI C-terminal GAY96_00250 PF01078 Magnesium chelatase, subunit ChlI GAY96_00260 PF00580 UvrD/REP helicase N-terminal domain GAY96_00260 PF13361 UvrD-like helicase C-terminal domain GAY96_00270 PF00563 EAL domain GAY96_00270 PF00990 Diguanylate cyclase, GGDEF domain GAY96_00270 PF03707 Bacterial signalling protein N terminal repeat GAY96_00280 PF00672 HAMP domain GAY96_00280 PF00512 His Kinase A (phospho-acceptor) domain GAY96_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_00280 PF01627 Hpt domain GAY96_00280 PF00072 Response regulator receiver domain GAY96_00280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GAY96_00285 PF00072 Response regulator receiver domain GAY96_00315 PF01380 SIS domain GAY96_00320 PF08220 DeoR-like helix-turn-helix domain GAY96_00320 PF00455 DeoR C terminal sensor domain GAY96_00325 PF00990 Diguanylate cyclase, GGDEF domain GAY96_00335 PF13462 Thioredoxin GAY96_00340 PF00034 Cytochrome c GAY96_00345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GAY96_00350 PF01926 50S ribosome-binding GTPase GAY96_00355 PF00950 ABC 3 transport family GAY96_00360 PF00005 ABC transporter GAY96_00365 PF01475 Ferric uptake regulator family GAY96_00370 PF01297 Zinc-uptake complex component A periplasmic GAY96_00375 PF12804 MobA-like NTP transferase domain GAY96_00375 PF14602 Hexapeptide repeat of succinyl-transferase GAY96_00375 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_00380 PF04172 LrgB-like family GAY96_00385 PF03788 LrgA family GAY96_00395 PF01594 AI-2E family transporter GAY96_00400 PF00486 Transcriptional regulatory protein, C terminal GAY96_00400 PF00072 Response regulator receiver domain GAY96_00405 PF16750 Sensor domain of 2-component histidine kinase GAY96_00405 PF00512 His Kinase A (phospho-acceptor) domain GAY96_00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_00405 PF00672 HAMP domain GAY96_00410 PF03949 Malic enzyme, NAD binding domain GAY96_00410 PF00390 Malic enzyme, N-terminal domain GAY96_00420 PF00679 Elongation factor G C-terminus GAY96_00420 PF00009 Elongation factor Tu GTP binding domain GAY96_00420 PF03144 Elongation factor Tu domain 2 GAY96_00425 PF03951 Glutamine synthetase, beta-Grasp domain GAY96_00425 PF00120 Glutamine synthetase, catalytic domain GAY96_00440 PF01812 5-formyltetrahydrofolate cyclo-ligase family GAY96_00450 PF05164 Cell division protein ZapA GAY96_00465 PF00557 Metallopeptidase family M24 GAY96_00465 PF05195 Aminopeptidase P, N-terminal domain GAY96_00470 PF01494 FAD binding domain GAY96_00475 PF01494 FAD binding domain GAY96_00480 PF03061 Thioesterase superfamily GAY96_00485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GAY96_00500 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_00505 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_00510 PF00005 ABC transporter GAY96_00515 PF01895 PhoU domain GAY96_00520 PF00267 Gram-negative porin GAY96_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_00525 PF00989 PAS fold GAY96_00525 PF00512 His Kinase A (phospho-acceptor) domain GAY96_00525 PF11808 Phosphate regulon sensor protein PhoR GAY96_00530 PF00072 Response regulator receiver domain GAY96_00530 PF00486 Transcriptional regulatory protein, C terminal GAY96_00550 PF12105 SpoU, rRNA methylase, C-terminal GAY96_00550 PF00588 SpoU rRNA Methylase family GAY96_00560 PF00072 Response regulator receiver domain GAY96_00565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_00565 PF00512 His Kinase A (phospho-acceptor) domain GAY96_00565 PF00989 PAS fold GAY96_00565 PF11808 Phosphate regulon sensor protein PhoR GAY96_00570 PF00486 Transcriptional regulatory protein, C terminal GAY96_00570 PF00072 Response regulator receiver domain GAY96_00575 PF01040 UbiA prenyltransferase family GAY96_00580 PF04345 Chorismate lyase GAY96_00585 PF00301 Rubredoxin GAY96_00590 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_00590 PF18113 Rubredoxin binding C-terminal domain GAY96_00595 PF00216 Bacterial DNA-binding protein GAY96_00610 PF00375 Sodium:dicarboxylate symporter family GAY96_00620 PF07498 Rho termination factor, N-terminal domain GAY96_00620 PF07497 Rho termination factor, RNA-binding domain GAY96_00620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GAY96_00625 PF00085 Thioredoxin GAY96_00630 PF02541 Ppx/GppA phosphatase family GAY96_00635 PF00394 Multicopper oxidase GAY96_00635 PF07731 Multicopper oxidase GAY96_00635 PF07732 Multicopper oxidase GAY96_00640 PF02503 Polyphosphate kinase middle domain GAY96_00640 PF13090 Polyphosphate kinase C-terminal domain 2 GAY96_00640 PF17941 Polyphosphate kinase C-terminal domain 1 GAY96_00640 PF13089 Polyphosphate kinase N-terminal domain GAY96_00645 PF00490 Delta-aminolevulinic acid dehydratase GAY96_00650 PF03061 Thioesterase superfamily GAY96_00660 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GAY96_00665 PF00291 Pyridoxal-phosphate dependent enzyme GAY96_00665 PF00585 C-terminal regulatory domain of Threonine dehydratase GAY96_00670 PF01553 Acyltransferase GAY96_00675 PF01713 Smr domain GAY96_00690 PF00501 AMP-binding enzyme GAY96_00690 PF13193 AMP-binding enzyme C-terminal domain GAY96_00700 PF00561 alpha/beta hydrolase fold GAY96_00705 PF00561 alpha/beta hydrolase fold GAY96_00705 PF07021 Methionine biosynthesis protein MetW GAY96_00715 PF01725 Ham1 family GAY96_00720 PF06969 HemN C-terminal domain GAY96_00720 PF04055 Radical SAM superfamily GAY96_00730 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GAY96_00740 PF00696 Amino acid kinase family GAY96_00740 PF13840 ACT domain GAY96_00745 PF06339 Ectoine synthase GAY96_00750 PF00202 Aminotransferase class-III GAY96_00755 PF00583 Acetyltransferase (GNAT) family GAY96_00765 PF00108 Thiolase, N-terminal domain GAY96_00765 PF02803 Thiolase, C-terminal domain GAY96_00775 PF00902 Sec-independent protein translocase protein (TatC) GAY96_00780 PF02416 mttA/Hcf106 family GAY96_00785 PF02416 mttA/Hcf106 family GAY96_00790 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GAY96_00795 PF01502 Phosphoribosyl-AMP cyclohydrolase GAY96_00800 PF03109 ABC1 family GAY96_00810 PF01209 ubiE/COQ5 methyltransferase family GAY96_00825 PF01738 Dienelactone hydrolase family GAY96_00830 PF01740 STAS domain GAY96_00830 PF00916 Sulfate permease family GAY96_00835 PF02594 Uncharacterised ACR, YggU family COG1872 GAY96_00840 PF02325 YGGT family GAY96_00845 PF14748 Pyrroline-5-carboxylate reductase dimerisation GAY96_00845 PF03807 NADP oxidoreductase coenzyme F420-dependent GAY96_00850 PF01168 Alanine racemase, N-terminal domain GAY96_00855 PF00437 Type II/IV secretion system protein GAY96_00860 PF00437 Type II/IV secretion system protein GAY96_00865 PF00563 EAL domain GAY96_00865 PF03707 Bacterial signalling protein N terminal repeat GAY96_00865 PF00990 Diguanylate cyclase, GGDEF domain GAY96_00870 PF04231 Endonuclease I GAY96_00875 PF13533 Biotin-lipoyl like GAY96_00880 PF00005 ABC transporter GAY96_00890 PF12801 4Fe-4S binding domain GAY96_00890 PF04205 FMN-binding domain GAY96_00895 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GAY96_00895 PF18764 Nitrous oxide reductase propeller repeat GAY96_00895 PF18793 Nitrous oxide reductase propeller repeat 2 GAY96_00900 PF05048 Periplasmic copper-binding protein (NosD) GAY96_00905 PF00005 ABC transporter GAY96_00910 PF12679 ABC-2 family transporter protein GAY96_00915 PF05573 NosL GAY96_00920 PF02416 mttA/Hcf106 family GAY96_00930 PF00171 Aldehyde dehydrogenase family GAY96_00940 PF08240 Alcohol dehydrogenase GroES-like domain GAY96_00940 PF00107 Zinc-binding dehydrogenase GAY96_00960 PF02690 Na+/Pi-cotransporter GAY96_00965 PF00294 pfkB family carbohydrate kinase GAY96_00970 PF08279 HTH domain GAY96_00970 PF02237 Biotin protein ligase C terminal domain GAY96_00970 PF03099 Biotin/lipoate A/B protein ligase family GAY96_00975 PF03309 Type III pantothenate kinase GAY96_01000 PF00009 Elongation factor Tu GTP binding domain GAY96_01000 PF03144 Elongation factor Tu domain 2 GAY96_01000 PF03143 Elongation factor Tu C-terminal domain GAY96_01010 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GAY96_01015 PF02357 Transcription termination factor nusG GAY96_01015 PF00467 KOW motif GAY96_01020 PF03946 Ribosomal protein L11, N-terminal domain GAY96_01020 PF00298 Ribosomal protein L11, RNA binding domain GAY96_01025 PF00687 Ribosomal protein L1p/L10e family GAY96_01030 PF00466 Ribosomal protein L10 GAY96_01035 PF00542 Ribosomal protein L7/L12 C-terminal domain GAY96_01035 PF16320 Ribosomal protein L7/L12 dimerisation domain GAY96_01040 PF04561 RNA polymerase Rpb2, domain 2 GAY96_01040 PF04565 RNA polymerase Rpb2, domain 3 GAY96_01040 PF10385 RNA polymerase beta subunit external 1 domain GAY96_01040 PF00562 RNA polymerase Rpb2, domain 6 GAY96_01040 PF04563 RNA polymerase beta subunit GAY96_01040 PF04560 RNA polymerase Rpb2, domain 7 GAY96_01045 PF04997 RNA polymerase Rpb1, domain 1 GAY96_01045 PF00623 RNA polymerase Rpb1, domain 2 GAY96_01045 PF04983 RNA polymerase Rpb1, domain 3 GAY96_01045 PF05000 RNA polymerase Rpb1, domain 4 GAY96_01045 PF04998 RNA polymerase Rpb1, domain 5 GAY96_01050 PF00164 Ribosomal protein S12/S23 GAY96_01055 PF00177 Ribosomal protein S7p/S5e GAY96_01060 PF03144 Elongation factor Tu domain 2 GAY96_01060 PF00009 Elongation factor Tu GTP binding domain GAY96_01060 PF03764 Elongation factor G, domain IV GAY96_01060 PF14492 Elongation Factor G, domain II GAY96_01060 PF00679 Elongation factor G C-terminus GAY96_01065 PF03143 Elongation factor Tu C-terminal domain GAY96_01065 PF00009 Elongation factor Tu GTP binding domain GAY96_01065 PF03144 Elongation factor Tu domain 2 GAY96_01075 PF00679 Elongation factor G C-terminus GAY96_01075 PF14492 Elongation Factor G, domain II GAY96_01075 PF03764 Elongation factor G, domain IV GAY96_01075 PF03144 Elongation factor Tu domain 2 GAY96_01075 PF00009 Elongation factor Tu GTP binding domain GAY96_01080 PF03143 Elongation factor Tu C-terminal domain GAY96_01080 PF03144 Elongation factor Tu domain 2 GAY96_01080 PF00009 Elongation factor Tu GTP binding domain GAY96_01090 PF00338 Ribosomal protein S10p/S20e GAY96_01095 PF00297 Ribosomal protein L3 GAY96_01100 PF00573 Ribosomal protein L4/L1 family GAY96_01105 PF00276 Ribosomal protein L23 GAY96_01110 PF00181 Ribosomal Proteins L2, RNA binding domain GAY96_01110 PF03947 Ribosomal Proteins L2, C-terminal domain GAY96_01115 PF00203 Ribosomal protein S19 GAY96_01120 PF00237 Ribosomal protein L22p/L17e GAY96_01125 PF07650 KH domain GAY96_01125 PF00189 Ribosomal protein S3, C-terminal domain GAY96_01130 PF00252 Ribosomal protein L16p/L10e GAY96_01135 PF00831 Ribosomal L29 protein GAY96_01140 PF00366 Ribosomal protein S17 GAY96_01145 PF00238 Ribosomal protein L14p/L23e GAY96_01150 PF00467 KOW motif GAY96_01150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GAY96_01155 PF00281 Ribosomal protein L5 GAY96_01155 PF00673 ribosomal L5P family C-terminus GAY96_01160 PF00253 Ribosomal protein S14p/S29e GAY96_01165 PF00410 Ribosomal protein S8 GAY96_01170 PF00347 Ribosomal protein L6 GAY96_01175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GAY96_01180 PF00333 Ribosomal protein S5, N-terminal domain GAY96_01180 PF03719 Ribosomal protein S5, C-terminal domain GAY96_01185 PF00327 Ribosomal protein L30p/L7e GAY96_01190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GAY96_01195 PF00344 SecY translocase GAY96_01200 PF00444 Ribosomal protein L36 GAY96_01205 PF00416 Ribosomal protein S13/S18 GAY96_01210 PF00411 Ribosomal protein S11 GAY96_01215 PF00163 Ribosomal protein S4/S9 N-terminal domain GAY96_01215 PF01479 S4 domain GAY96_01220 PF01000 RNA polymerase Rpb3/RpoA insert domain GAY96_01220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GAY96_01220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GAY96_01225 PF01196 Ribosomal protein L17 GAY96_01230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GAY96_01250 PF00196 Bacterial regulatory proteins, luxR family GAY96_01250 PF00563 EAL domain GAY96_01255 PF00158 Sigma-54 interaction domain GAY96_01255 PF02954 Bacterial regulatory protein, Fis family GAY96_01255 PF00072 Response regulator receiver domain GAY96_01260 PF01654 Cytochrome bd terminal oxidase subunit I GAY96_01265 PF02322 Cytochrome bd terminal oxidase subunit II GAY96_01270 PF08173 Membrane bound YbgT-like protein GAY96_01275 PF00581 Rhodanese-like domain GAY96_01290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GAY96_01290 PF13244 Domain of unknown function (DUF4040) GAY96_01290 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter GAY96_01290 PF00361 Proton-conducting membrane transporter GAY96_01295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GAY96_01300 PF00361 Proton-conducting membrane transporter GAY96_01305 PF01899 Na+/H+ ion antiporter subunit GAY96_01310 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) GAY96_01315 PF03334 Na+/H+ antiporter subunit GAY96_01320 PF18073 Rubredoxin metal binding domain GAY96_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme GAY96_01340 PF04452 RNA methyltransferase GAY96_01350 PF13677 Membrane MotB of proton-channel complex MotA/MotB GAY96_01350 PF00691 OmpA family GAY96_01355 PF01618 MotA/TolQ/ExbB proton channel family GAY96_01360 PF02609 Exonuclease VII small subunit GAY96_01365 PF00348 Polyprenyl synthetase GAY96_01370 PF02779 Transketolase, pyrimidine binding domain GAY96_01370 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GAY96_01370 PF02780 Transketolase, C-terminal domain GAY96_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_01375 PF00989 PAS fold GAY96_01375 PF00512 His Kinase A (phospho-acceptor) domain GAY96_01380 PF02954 Bacterial regulatory protein, Fis family GAY96_01380 PF00072 Response regulator receiver domain GAY96_01380 PF00158 Sigma-54 interaction domain GAY96_01385 PF00925 GTP cyclohydrolase II GAY96_01390 PF04298 Putative neutral zinc metallopeptidase GAY96_01395 PF01022 Bacterial regulatory protein, arsR family GAY96_01400 PF01758 Sodium Bile acid symporter family GAY96_01405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GAY96_01405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GAY96_01415 PF00107 Zinc-binding dehydrogenase GAY96_01415 PF08240 Alcohol dehydrogenase GroES-like domain GAY96_01430 PF00571 CBS domain GAY96_01430 PF00478 IMP dehydrogenase / GMP reductase domain GAY96_01440 PF00486 Transcriptional regulatory protein, C terminal GAY96_01440 PF00072 Response regulator receiver domain GAY96_01445 PF16750 Sensor domain of 2-component histidine kinase GAY96_01445 PF00512 His Kinase A (phospho-acceptor) domain GAY96_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_01445 PF00672 HAMP domain GAY96_01455 PF03060 Nitronate monooxygenase GAY96_01460 PF00561 alpha/beta hydrolase fold GAY96_01465 PF03280 Proteobacterial lipase chaperone protein GAY96_01470 PF00459 Inositol monophosphatase family GAY96_01475 PF13472 GDSL-like Lipase/Acylhydrolase family GAY96_01480 PF00005 ABC transporter GAY96_01490 PF02492 CobW/HypB/UreG, nucleotide-binding domain GAY96_01490 PF07683 Cobalamin synthesis protein cobW C-terminal domain GAY96_01500 PF00781 Diacylglycerol kinase catalytic domain GAY96_01515 PF03061 Thioesterase superfamily GAY96_01525 PF12833 Helix-turn-helix domain GAY96_01525 PF02805 Metal binding domain of Ada GAY96_01525 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GAY96_01525 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GAY96_01530 PF13746 4Fe-4S dicluster domain GAY96_01530 PF12801 4Fe-4S binding domain GAY96_01530 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase GAY96_01535 PF00155 Aminotransferase class I and II GAY96_01535 PF00392 Bacterial regulatory proteins, gntR family GAY96_01540 PF00561 alpha/beta hydrolase fold GAY96_01545 PF01145 SPFH domain / Band 7 family GAY96_01555 PF09335 SNARE associated Golgi protein GAY96_01560 PF01053 Cys/Met metabolism PLP-dependent enzyme GAY96_01565 PF00849 RNA pseudouridylate synthase GAY96_01565 PF01479 S4 domain GAY96_01585 PF00563 EAL domain GAY96_01585 PF00990 Diguanylate cyclase, GGDEF domain GAY96_01585 PF03707 Bacterial signalling protein N terminal repeat GAY96_01590 PF00563 EAL domain GAY96_01590 PF00990 Diguanylate cyclase, GGDEF domain GAY96_01590 PF03707 Bacterial signalling protein N terminal repeat GAY96_01605 PF00743 Flavin-binding monooxygenase-like GAY96_01610 PF00561 alpha/beta hydrolase fold GAY96_01625 PF04073 Aminoacyl-tRNA editing domain GAY96_01640 PF02769 AIR synthase related protein, C-terminal domain GAY96_01640 PF00586 AIR synthase related protein, N-terminal domain GAY96_01645 PF01029 NusB family GAY96_01650 PF00885 6,7-dimethyl-8-ribityllumazine synthase GAY96_01655 PF00925 GTP cyclohydrolase II GAY96_01655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GAY96_01660 PF00677 Lumazine binding domain GAY96_01665 PF01872 RibD C-terminal domain GAY96_01665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GAY96_01670 PF03477 ATP cone domain GAY96_01680 PF00464 Serine hydroxymethyltransferase GAY96_01685 PF00563 EAL domain GAY96_01685 PF03707 Bacterial signalling protein N terminal repeat GAY96_01685 PF00990 Diguanylate cyclase, GGDEF domain GAY96_01690 PF12848 ABC transporter GAY96_01690 PF00005 ABC transporter GAY96_01695 PF07238 PilZ domain GAY96_01700 PF01557 Fumarylacetoacetate (FAA) hydrolase family GAY96_01705 PF00436 Single-strand binding protein family GAY96_01710 PF07690 Major Facilitator Superfamily GAY96_01715 PF00196 Bacterial regulatory proteins, luxR family GAY96_01720 PF17755 UvrA DNA-binding domain GAY96_01720 PF17760 UvrA interaction domain GAY96_01760 PF02666 Phosphatidylserine decarboxylase GAY96_01765 PF00581 Rhodanese-like domain GAY96_01775 PF01618 MotA/TolQ/ExbB proton channel family GAY96_01780 PF00691 OmpA family GAY96_01780 PF13677 Membrane MotB of proton-channel complex MotA/MotB GAY96_01785 PF03193 RsgA GTPase GAY96_01790 PF00929 Exonuclease GAY96_01795 PF17151 Periplasmic sensor domain GAY96_01795 PF00990 Diguanylate cyclase, GGDEF domain GAY96_01800 PF08331 Domain of unknown function (DUF1730) GAY96_01805 PF03853 YjeF-related protein N-terminus GAY96_01805 PF01256 Carbohydrate kinase GAY96_01810 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GAY96_01815 PF01520 N-acetylmuramoyl-L-alanine amidase GAY96_01815 PF11741 AMIN domain GAY96_01820 PF01119 DNA mismatch repair protein, C-terminal domain GAY96_01820 PF08676 MutL C terminal dimerisation domain GAY96_01830 PF17209 Hfq protein GAY96_01835 PF16360 GTP-binding GTPase Middle Region GAY96_01835 PF13167 GTP-binding GTPase N-terminal GAY96_01835 PF01926 50S ribosome-binding GTPase GAY96_01840 PF01145 SPFH domain / Band 7 family GAY96_01840 PF12221 Bacterial membrane protein N terminal GAY96_01845 PF01145 SPFH domain / Band 7 family GAY96_01855 PF13393 Histidyl-tRNA synthetase GAY96_01860 PF00709 Adenylosuccinate synthetase GAY96_01870 PF03079 ARD/ARD' family GAY96_01875 PF00596 Class II Aldolase and Adducin N-terminal domain GAY96_01880 PF01008 Initiation factor 2 subunit family GAY96_01885 PF00342 Phosphoglucose isomerase GAY96_01890 PF02261 Aspartate decarboxylase GAY96_01895 PF02569 Pantoate-beta-alanine ligase GAY96_01900 PF02548 Ketopantoate hydroxymethyltransferase GAY96_01905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GAY96_01910 PF01743 Poly A polymerase head domain GAY96_01910 PF12626 Polymerase A arginine-rich C-terminus GAY96_01910 PF12627 Probable RNA and SrmB- binding site of polymerase A GAY96_01915 PF00005 ABC transporter GAY96_01920 PF01032 FecCD transport family GAY96_01935 PF03749 Sugar fermentation stimulation protein RE domain GAY96_01935 PF17746 SfsA N-terminal OB domain GAY96_01940 PF00155 Aminotransferase class I and II GAY96_01945 PF01258 Prokaryotic dksA/traR C4-type zinc finger GAY96_01950 PF00749 tRNA synthetases class I (E and Q), catalytic domain GAY96_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_01955 PF00512 His Kinase A (phospho-acceptor) domain GAY96_01955 PF00989 PAS fold GAY96_01955 PF08447 PAS fold GAY96_01960 PF02954 Bacterial regulatory protein, Fis family GAY96_01960 PF00072 Response regulator receiver domain GAY96_01960 PF00158 Sigma-54 interaction domain GAY96_01980 PF00136 DNA polymerase family B GAY96_01980 PF03104 DNA polymerase family B, exonuclease domain GAY96_01990 PF03942 DTW domain GAY96_02000 PF07549 SecD/SecF GG Motif GAY96_02000 PF02355 Protein export membrane protein GAY96_02020 PF13180 PDZ domain GAY96_02020 PF03572 Peptidase family S41 GAY96_02025 PF01551 Peptidase family M23 GAY96_02030 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GAY96_02030 PF01676 Metalloenzyme superfamily GAY96_02035 PF00581 Rhodanese-like domain GAY96_02040 PF02556 Preprotein translocase subunit SecB GAY96_02045 PF07995 Glucose / Sorbosone dehydrogenase GAY96_02050 PF00588 SpoU rRNA Methylase family GAY96_02070 PF02954 Bacterial regulatory protein, Fis family GAY96_02070 PF00072 Response regulator receiver domain GAY96_02070 PF00158 Sigma-54 interaction domain GAY96_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_02075 PF00512 His Kinase A (phospho-acceptor) domain GAY96_02075 PF00989 PAS fold GAY96_02085 PF04247 Invasion gene expression up-regulator, SirB GAY96_02090 PF00672 HAMP domain GAY96_02090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_02090 PF02743 Cache domain GAY96_02100 PF01169 Uncharacterized protein family UPF0016 GAY96_02125 PF03776 Septum formation topological specificity factor MinE GAY96_02130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GAY96_02135 PF05209 Septum formation inhibitor MinC, N-terminal domain GAY96_02135 PF03775 Septum formation inhibitor MinC, C-terminal domain GAY96_02145 PF11798 IMS family HHH motif GAY96_02145 PF11799 impB/mucB/samB family C-terminal domain GAY96_02145 PF00817 impB/mucB/samB family GAY96_02150 PF01569 PAP2 superfamily GAY96_02155 PF00534 Glycosyl transferases group 1 GAY96_02155 PF13439 Glycosyltransferase Family 4 GAY96_02160 PF12833 Helix-turn-helix domain GAY96_02160 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_02200 PF01266 FAD dependent oxidoreductase GAY96_02230 PF00534 Glycosyl transferases group 1 GAY96_02230 PF13439 Glycosyltransferase Family 4 GAY96_02235 PF03330 Lytic transglycolase GAY96_02235 PF05036 Sporulation related domain GAY96_02240 PF13406 Transglycosylase SLT domain GAY96_02245 PF01098 Cell cycle protein GAY96_02250 PF03717 Penicillin-binding Protein dimerisation domain GAY96_02250 PF00905 Penicillin binding protein transpeptidase domain GAY96_02255 PF02590 Predicted SPOUT methyltransferase GAY96_02265 PF01467 Cytidylyltransferase-like GAY96_02270 PF00171 Aldehyde dehydrogenase family GAY96_02280 PF03707 Bacterial signalling protein N terminal repeat GAY96_02280 PF00563 EAL domain GAY96_02280 PF00990 Diguanylate cyclase, GGDEF domain GAY96_02280 PF13188 PAS domain GAY96_02300 PF02810 SEC-C motif GAY96_02315 PF07943 Penicillin-binding protein 5, C-terminal domain GAY96_02315 PF00768 D-alanyl-D-alanine carboxypeptidase GAY96_02320 PF04359 Protein of unknown function (DUF493) GAY96_02325 PF03099 Biotin/lipoate A/B protein ligase family GAY96_02330 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GAY96_02330 PF04055 Radical SAM superfamily GAY96_02340 PF00085 Thioredoxin GAY96_02350 PF01272 Transcription elongation factor, GreA/GreB, C-term GAY96_02350 PF03449 Transcription elongation factor, N-terminal GAY96_02355 PF11412 Disulphide bond corrector protein DsbC GAY96_02355 PF02683 Cytochrome C biogenesis protein transmembrane region GAY96_02360 PF00348 Polyprenyl synthetase GAY96_02365 PF00829 Ribosomal prokaryotic L21 protein GAY96_02370 PF01016 Ribosomal L27 protein GAY96_02375 PF01926 50S ribosome-binding GTPase GAY96_02375 PF01018 GTP1/OBG GAY96_02380 PF01472 PUA domain GAY96_02380 PF00696 Amino acid kinase family GAY96_02385 PF00793 DAHP synthetase I family GAY96_02390 PF01649 Ribosomal protein S20 GAY96_02395 PF03023 Lipid II flippase MurJ GAY96_02400 PF01687 Riboflavin kinase GAY96_02400 PF06574 FAD synthetase GAY96_02405 PF06827 Zinc finger found in FPG and IleRS GAY96_02405 PF08264 Anticodon-binding domain of tRNA GAY96_02405 PF00133 tRNA synthetases class I (I, L, M and V) GAY96_02410 PF01252 Signal peptidase (SPase) II GAY96_02415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_02420 PF02401 LytB protein GAY96_02445 PF05567 Neisseria PilC beta-propeller domain GAY96_02455 PF14245 Type IV pilin PilA GAY96_02455 PF07963 Prokaryotic N-terminal methylation motif GAY96_02460 PF00072 Response regulator receiver domain GAY96_02460 PF00158 Sigma-54 interaction domain GAY96_02460 PF02954 Bacterial regulatory protein, Fis family GAY96_02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_02465 PF00512 His Kinase A (phospho-acceptor) domain GAY96_02470 PF00795 Carbon-nitrogen hydrolase GAY96_02470 PF02540 NAD synthase GAY96_02475 PF13525 Outer membrane lipoprotein GAY96_02480 PF01479 S4 domain GAY96_02480 PF00849 RNA pseudouridylate synthase GAY96_02485 PF02578 Multi-copper polyphenol oxidoreductase laccase GAY96_02495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GAY96_02495 PF00205 Thiamine pyrophosphate enzyme, central domain GAY96_02495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GAY96_02500 PF10369 Small subunit of acetolactate synthase GAY96_02505 PF00472 RF-1 domain GAY96_02510 PF03006 Haemolysin-III related GAY96_02515 PF01541 GIY-YIG catalytic domain GAY96_02535 PF00263 Bacterial type II and III secretion system protein GAY96_02535 PF03958 Bacterial type II/III secretion system short domain GAY96_02540 PF02545 Maf-like protein GAY96_02545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GAY96_02545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GAY96_02575 PF05681 Fumarate hydratase (Fumerase) GAY96_02575 PF05683 Fumarase C-terminus GAY96_02590 PF03641 Possible lysine decarboxylase GAY96_02590 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GAY96_02590 PF11892 Domain of unknown function (DUF3412) GAY96_02595 PF01769 Divalent cation transporter GAY96_02595 PF03448 MgtE intracellular N domain GAY96_02595 PF00571 CBS domain GAY96_02600 PF00909 Ammonium Transporter Family GAY96_02610 PF01842 ACT domain GAY96_02610 PF00551 Formyl transferase GAY96_02615 PF00108 Thiolase, N-terminal domain GAY96_02615 PF02803 Thiolase, C-terminal domain GAY96_02625 PF07044 Protein of unknown function (DUF1329) GAY96_02635 PF01636 Phosphotransferase enzyme family GAY96_02640 PF00156 Phosphoribosyl transferase domain GAY96_02655 PF12806 Acetyl-CoA dehydrogenase C-terminal like GAY96_02655 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_02655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_02655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_02660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_02660 PF12806 Acetyl-CoA dehydrogenase C-terminal like GAY96_02660 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_02660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_02680 PF04715 Anthranilate synthase component I, N terminal region GAY96_02680 PF00425 chorismate binding enzyme GAY96_02685 PF00117 Glutamine amidotransferase class-I GAY96_02690 PF02885 Glycosyl transferase family, helical bundle domain GAY96_02690 PF00591 Glycosyl transferase family, a/b domain GAY96_02695 PF00218 Indole-3-glycerol phosphate synthase GAY96_02705 PF00834 Ribulose-phosphate 3 epimerase family GAY96_02710 PF13419 Haloacid dehalogenase-like hydrolase GAY96_02715 PF11849 Domain of unknown function (DUF3369) GAY96_02720 PF00027 Cyclic nucleotide-binding domain GAY96_02720 PF13545 Crp-like helix-turn-helix domain GAY96_02725 PF02566 OsmC-like protein GAY96_02730 PF02675 S-adenosylmethionine decarboxylase GAY96_02745 PF05175 Methyltransferase small domain GAY96_02745 PF08468 Methyltransferase small domain N-terminal GAY96_02750 PF13411 MerR HTH family regulatory protein GAY96_02755 PF13426 PAS domain GAY96_02755 PF01740 STAS domain GAY96_02760 PF00719 Inorganic pyrophosphatase GAY96_02765 PF07715 TonB-dependent Receptor Plug Domain GAY96_02765 PF00593 TonB dependent receptor GAY96_02775 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GAY96_02780 PF08245 Mur ligase middle domain GAY96_02780 PF02875 Mur ligase family, glutamate ligase domain GAY96_02780 PF01225 Mur ligase family, catalytic domain GAY96_02785 PF02441 Flavoprotein GAY96_02805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_02805 PF00672 HAMP domain GAY96_02805 PF12729 Four helix bundle sensory module for signal transduction GAY96_02825 PF06144 DNA polymerase III, delta subunit GAY96_02825 PF14840 Processivity clamp loader gamma complex DNA pol III C-term GAY96_02830 PF04390 Lipopolysaccharide-assembly GAY96_02835 PF00133 tRNA synthetases class I (I, L, M and V) GAY96_02835 PF13603 Leucyl-tRNA synthetase, Domain 2 GAY96_02835 PF08264 Anticodon-binding domain of tRNA GAY96_02845 PF05378 Hydantoinase/oxoprolinase N-terminal region GAY96_02845 PF01968 Hydantoinase/oxoprolinase GAY96_02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_02850 PF08447 PAS fold GAY96_02855 PF00462 Glutaredoxin GAY96_02860 PF00196 Bacterial regulatory proteins, luxR family GAY96_02860 PF00072 Response regulator receiver domain GAY96_02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_02865 PF03466 LysR substrate binding domain GAY96_02890 PF00106 short chain dehydrogenase GAY96_02905 PF03441 FAD binding domain of DNA photolyase GAY96_02905 PF00875 DNA photolyase GAY96_02910 PF13411 MerR HTH family regulatory protein GAY96_02925 PF01593 Flavin containing amine oxidoreductase GAY96_02930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_02930 PF12806 Acetyl-CoA dehydrogenase C-terminal like GAY96_02930 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_02930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_02935 PF08338 Domain of unknown function (DUF1731) GAY96_02935 PF01370 NAD dependent epimerase/dehydratase family GAY96_02950 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_02955 PF00005 ABC transporter GAY96_02955 PF03459 TOBE domain GAY96_02960 PF17945 Beta/Gamma crystallin GAY96_02960 PF12561 ToxR activated gene A lipoprotein domain GAY96_02965 PF01645 Conserved region in glutamate synthase GAY96_02970 PF00456 Transketolase, thiamine diphosphate binding domain GAY96_02970 PF17831 Pyruvate dehydrogenase E1 component middle domain GAY96_02975 PF02817 e3 binding domain GAY96_02975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GAY96_02975 PF00364 Biotin-requiring enzyme GAY96_02980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_02980 PF00672 HAMP domain GAY96_02980 PF02743 Cache domain GAY96_02985 PF01923 Cobalamin adenosyltransferase GAY96_02995 PF02558 Ketopantoate reductase PanE/ApbA GAY96_02995 PF08546 Ketopantoate reductase PanE/ApbA C terminal GAY96_03005 PF04461 Protein of unknown function (DUF520) GAY96_03010 PF07690 Major Facilitator Superfamily GAY96_03015 PF00480 ROK family GAY96_03025 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase GAY96_03030 PF02277 Phosphoribosyltransferase GAY96_03040 PF02654 Cobalamin-5-phosphate synthase GAY96_03050 PF03186 CobD/Cbib protein GAY96_03055 PF00155 Aminotransferase class I and II GAY96_03060 PF01497 Periplasmic binding protein GAY96_03065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GAY96_03080 PF00210 Ferritin-like domain GAY96_03085 PF02535 ZIP Zinc transporter GAY96_03095 PF08207 Elongation factor P (EF-P) KOW-like domain GAY96_03095 PF09285 Elongation factor P, C-terminal GAY96_03095 PF01132 Elongation factor P (EF-P) OB domain GAY96_03100 PF03707 Bacterial signalling protein N terminal repeat GAY96_03100 PF00990 Diguanylate cyclase, GGDEF domain GAY96_03100 PF00563 EAL domain GAY96_03105 PF00512 His Kinase A (phospho-acceptor) domain GAY96_03105 PF00989 PAS fold GAY96_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_03110 PF02146 Sir2 family GAY96_03115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GAY96_03115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GAY96_03120 PF01070 FMN-dependent dehydrogenase GAY96_03125 PF00890 FAD binding domain GAY96_03130 PF13091 PLD-like domain GAY96_03140 PF01668 SmpB protein GAY96_03145 PF00209 Sodium:neurotransmitter symporter family GAY96_03150 PF03364 Polyketide cyclase / dehydrase and lipid transport GAY96_03155 PF03658 RnfH family Ubiquitin GAY96_03160 PF04355 SmpA / OmlA family GAY96_03165 PF01475 Ferric uptake regulator family GAY96_03170 PF02463 RecF/RecN/SMC N terminal domain GAY96_03175 PF01025 GrpE GAY96_03180 PF00012 Hsp70 protein GAY96_03185 PF00226 DnaJ domain GAY96_03185 PF01556 DnaJ C terminal domain GAY96_03185 PF00684 DnaJ central domain GAY96_03190 PF01113 Dihydrodipicolinate reductase, N-terminus GAY96_03190 PF05173 Dihydrodipicolinate reductase, C-terminus GAY96_03195 PF00440 Bacterial regulatory proteins, tetR family GAY96_03200 PF00117 Glutamine amidotransferase class-I GAY96_03200 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GAY96_03205 PF02142 MGS-like domain GAY96_03205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GAY96_03205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GAY96_03210 PF03449 Transcription elongation factor, N-terminal GAY96_03210 PF01272 Transcription elongation factor, GreA/GreB, C-term GAY96_03215 PF03061 Thioesterase superfamily GAY96_03220 PF07977 FabA-like domain GAY96_03225 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GAY96_03225 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GAY96_03230 PF01985 CRS1 / YhbY (CRM) domain GAY96_03235 PF01728 FtsJ-like methyltransferase GAY96_03240 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_03240 PF17862 AAA+ lid domain GAY96_03240 PF06480 FtsH Extracellular GAY96_03240 PF01434 Peptidase family M41 GAY96_03245 PF00809 Pterin binding enzyme GAY96_03250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GAY96_03250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GAY96_03250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GAY96_03250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GAY96_03255 PF00121 Triosephosphate isomerase GAY96_03260 PF03840 Preprotein translocase SecG subunit GAY96_03270 PF02576 RimP N-terminal domain GAY96_03270 PF17384 RimP C-terminal SH3 domain GAY96_03275 PF13184 NusA-like KH domain GAY96_03275 PF08529 NusA N-terminal domain GAY96_03275 PF00575 S1 RNA binding domain GAY96_03280 PF11987 Translation-initiation factor 2 GAY96_03280 PF08364 Bacterial translation initiation factor IF-2 associated region GAY96_03280 PF04760 Translation initiation factor IF-2, N-terminal region GAY96_03280 PF00009 Elongation factor Tu GTP binding domain GAY96_03285 PF02033 Ribosome-binding factor A GAY96_03290 PF16198 tRNA pseudouridylate synthase B C-terminal domain GAY96_03290 PF01509 TruB family pseudouridylate synthase (N terminal domain) GAY96_03290 PF09157 Pseudouridine synthase II TruB, C-terminal GAY96_03295 PF00312 Ribosomal protein S15 GAY96_03300 PF00013 KH domain GAY96_03300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GAY96_03300 PF01138 3' exoribonuclease family, domain 1 GAY96_03300 PF03725 3' exoribonuclease family, domain 2 GAY96_03300 PF00575 S1 RNA binding domain GAY96_03310 PF00753 Metallo-beta-lactamase superfamily GAY96_03310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GAY96_03310 PF10996 Beta-Casp domain GAY96_03315 PF02885 Glycosyl transferase family, helical bundle domain GAY96_03315 PF00591 Glycosyl transferase family, a/b domain GAY96_03315 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GAY96_03330 PF00743 Flavin-binding monooxygenase-like GAY96_03335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GAY96_03345 PF02515 CoA-transferase family III GAY96_03350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_03350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_03350 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_03355 PF02803 Thiolase, C-terminal domain GAY96_03355 PF00108 Thiolase, N-terminal domain GAY96_03360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GAY96_03360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GAY96_03360 PF00378 Enoyl-CoA hydratase/isomerase GAY96_03370 PF00512 His Kinase A (phospho-acceptor) domain GAY96_03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_03370 PF00989 PAS fold GAY96_03375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_03385 PF06071 Protein of unknown function (DUF933) GAY96_03385 PF01926 50S ribosome-binding GTPase GAY96_03390 PF01195 Peptidyl-tRNA hydrolase GAY96_03395 PF01386 Ribosomal L25p family GAY96_03395 PF14693 Ribosomal protein TL5, C-terminal domain GAY96_03400 PF14572 Phosphoribosyl synthetase-associated domain GAY96_03400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GAY96_03410 PF00288 GHMP kinases N terminal domain GAY96_03410 PF08544 GHMP kinases C terminal GAY96_03415 PF03550 Outer membrane lipoprotein LolB GAY96_03425 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GAY96_03425 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GAY96_03425 PF01488 Shikimate / quinate 5-dehydrogenase GAY96_03430 PF03462 PCRF domain GAY96_03430 PF00472 RF-1 domain GAY96_03435 PF13847 Methyltransferase domain GAY96_03435 PF17827 PrmC N-terminal domain GAY96_03440 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_03445 PF13580 SIS domain GAY96_03450 PF02021 Uncharacterised protein family UPF0102 GAY96_03455 PF04348 LppC putative lipoprotein GAY96_03460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GAY96_03490 PF12706 Beta-lactamase superfamily domain GAY96_03495 PF12852 Cupin GAY96_03495 PF12833 Helix-turn-helix domain GAY96_03505 PF05724 Thiopurine S-methyltransferase (TPMT) GAY96_03510 PF01980 tRNA-methyltransferase O GAY96_03510 PF18389 TrmO C-terminal domain GAY96_03515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GAY96_03575 PF01618 MotA/TolQ/ExbB proton channel family GAY96_03580 PF01618 MotA/TolQ/ExbB proton channel family GAY96_03585 PF02472 Biopolymer transport protein ExbD/TolR GAY96_03590 PF03544 Gram-negative bacterial TonB protein C-terminal GAY96_03605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_03610 PF01553 Acyltransferase GAY96_03615 PF04102 SlyX GAY96_03620 PF00313 'Cold-shock' DNA-binding domain GAY96_03625 PF00459 Inositol monophosphatase family GAY96_03630 PF00588 SpoU rRNA Methylase family GAY96_03635 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_03640 PF02082 Transcriptional regulator GAY96_03645 PF00266 Aminotransferase class-V GAY96_03650 PF00334 Nucleoside diphosphate kinase GAY96_03655 PF04055 Radical SAM superfamily GAY96_03665 PF04551 GcpE protein GAY96_03670 PF03129 Anticodon binding domain GAY96_03670 PF13393 Histidyl-tRNA synthetase GAY96_03675 PF09976 Tetratricopeptide repeat-like domain GAY96_03680 PF13360 PQQ-like domain GAY96_03685 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GAY96_03685 PF01926 50S ribosome-binding GTPase GAY96_03690 PF00672 HAMP domain GAY96_03690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_03700 PF00378 Enoyl-CoA hydratase/isomerase GAY96_03705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_03705 PF12806 Acetyl-CoA dehydrogenase C-terminal like GAY96_03705 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_03705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_03710 PF02311 AraC-like ligand binding domain GAY96_03710 PF12833 Helix-turn-helix domain GAY96_03715 PF04304 Protein of unknown function (DUF454) GAY96_03720 PF12697 Alpha/beta hydrolase family GAY96_03725 PF12833 Helix-turn-helix domain GAY96_03725 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_03730 PF00753 Metallo-beta-lactamase superfamily GAY96_03730 PF14863 Alkyl sulfatase dimerisation GAY96_03730 PF14864 Alkyl sulfatase C-terminal GAY96_03740 PF00005 ABC transporter GAY96_03745 PF00593 TonB dependent receptor GAY96_03745 PF07715 TonB-dependent Receptor Plug Domain GAY96_03765 PF01814 Hemerythrin HHE cation binding domain GAY96_03770 PF00939 Sodium:sulfate symporter transmembrane region GAY96_03775 PF01588 Putative tRNA binding domain GAY96_03775 PF09334 tRNA synthetases class I (M) GAY96_03780 PF03471 Transporter associated domain GAY96_03780 PF01595 Cyclin M transmembrane N-terminal domain GAY96_03780 PF00571 CBS domain GAY96_03790 PF02978 Signal peptide binding domain GAY96_03790 PF02881 SRP54-type protein, helical bundle domain GAY96_03790 PF00448 SRP54-type protein, GTPase domain GAY96_03795 PF03350 Uncharacterized protein family, UPF0114 GAY96_03800 PF01062 Bestrophin, RFP-TM, chloride channel GAY96_03810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GAY96_03810 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_03820 PF14821 Threonine synthase N terminus GAY96_03820 PF00291 Pyridoxal-phosphate dependent enzyme GAY96_03830 PF00210 Ferritin-like domain GAY96_03835 PF00210 Ferritin-like domain GAY96_03860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GAY96_03860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GAY96_03865 PF01261 Xylose isomerase-like TIM barrel GAY96_03870 PF06945 Protein of unknown function (DUF1289) GAY96_03875 PF00313 'Cold-shock' DNA-binding domain GAY96_03880 PF00990 Diguanylate cyclase, GGDEF domain GAY96_03885 PF10576 Iron-sulfur binding domain of endonuclease III GAY96_03885 PF00633 Helix-hairpin-helix motif GAY96_03885 PF00730 HhH-GPD superfamily base excision DNA repair protein GAY96_03890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GAY96_03895 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase GAY96_03900 PF04321 RmlD substrate binding domain GAY96_03905 PF16363 GDP-mannose 4,6 dehydratase GAY96_03910 PF14602 Hexapeptide repeat of succinyl-transferase GAY96_03910 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle GAY96_03915 PF03960 ArsC family GAY96_03930 PF02421 Ferrous iron transport protein B GAY96_03930 PF07670 Nucleoside recognition GAY96_03930 PF07664 Ferrous iron transport protein B C terminus GAY96_03930 PF17910 FeoB cytosolic helical domain GAY96_03935 PF04023 FeoA domain GAY96_03935 PF07664 Ferrous iron transport protein B C terminus GAY96_03935 PF17910 FeoB cytosolic helical domain GAY96_03935 PF02421 Ferrous iron transport protein B GAY96_03935 PF07670 Nucleoside recognition GAY96_03945 PF00575 S1 RNA binding domain GAY96_03945 PF00773 RNB domain GAY96_03945 PF08206 Ribonuclease B OB domain GAY96_03945 PF17876 Cold shock domain GAY96_03955 PF12706 Beta-lactamase superfamily domain GAY96_03960 PF01625 Peptide methionine sulfoxide reductase GAY96_03965 PF13614 AAA domain GAY96_03970 PF01026 TatD related DNase GAY96_03980 PF07044 Protein of unknown function (DUF1329) GAY96_03985 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GAY96_03985 PF01464 Transglycosylase SLT domain GAY96_04005 PF00216 Bacterial DNA-binding protein GAY96_04020 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GAY96_04030 PF01050 Mannose-6-phosphate isomerase GAY96_04030 PF00483 Nucleotidyl transferase GAY96_04035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GAY96_04035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GAY96_04035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GAY96_04035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GAY96_04045 PF13439 Glycosyltransferase Family 4 GAY96_04045 PF00534 Glycosyl transferases group 1 GAY96_04065 PF16363 GDP-mannose 4,6 dehydratase GAY96_04070 PF16363 GDP-mannose 4,6 dehydratase GAY96_04075 PF00534 Glycosyl transferases group 1 GAY96_04075 PF00862 Sucrose synthase GAY96_04085 PF00483 Nucleotidyl transferase GAY96_04090 PF01370 NAD dependent epimerase/dehydratase family GAY96_04095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GAY96_04095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GAY96_04095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GAY96_04100 PF01943 Polysaccharide biosynthesis protein GAY96_04105 PF01053 Cys/Met metabolism PLP-dependent enzyme GAY96_04120 PF13439 Glycosyltransferase Family 4 GAY96_04120 PF00534 Glycosyl transferases group 1 GAY96_04130 PF00535 Glycosyl transferase family 2 GAY96_04135 PF00535 Glycosyl transferase family 2 GAY96_04140 PF01370 NAD dependent epimerase/dehydratase family GAY96_04145 PF02397 Bacterial sugar transferase GAY96_04155 PF04138 GtrA-like protein GAY96_04160 PF01609 Transposase DDE domain GAY96_04160 PF05598 Transposase domain (DUF772) GAY96_04165 PF00535 Glycosyl transferase family 2 GAY96_04195 PF00005 ABC transporter GAY96_04205 PF01757 Acyltransferase family GAY96_04215 PF01757 Acyltransferase family GAY96_04220 PF08241 Methyltransferase domain GAY96_04235 PF00378 Enoyl-CoA hydratase/isomerase GAY96_04240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_04240 PF03466 LysR substrate binding domain GAY96_04250 PF02678 Pirin GAY96_04250 PF17954 Quercetinase C-terminal cupin domain GAY96_04260 PF01842 ACT domain GAY96_04260 PF00742 Homoserine dehydrogenase GAY96_04260 PF03447 Homoserine dehydrogenase, NAD binding domain GAY96_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_04265 PF03466 LysR substrate binding domain GAY96_04270 PF01263 Aldose 1-epimerase GAY96_04280 PF00692 dUTPase GAY96_04295 PF01734 Patatin-like phospholipase GAY96_04300 PF05175 Methyltransferase small domain GAY96_04305 PF01264 Chorismate synthase GAY96_04310 PF12832 MFS_1 like family GAY96_04325 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus GAY96_04325 PF00561 alpha/beta hydrolase fold GAY96_04360 PF00141 Peroxidase GAY96_04370 PF01804 Penicillin amidase GAY96_04375 PF00106 short chain dehydrogenase GAY96_04385 PF01068 ATP dependent DNA ligase domain GAY96_04385 PF14743 DNA ligase OB-like domain GAY96_04390 PF01368 DHH family GAY96_04390 PF02272 DHHA1 domain GAY96_04390 PF17768 RecJ OB domain GAY96_04400 PF00873 AcrB/AcrD/AcrF family GAY96_04405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GAY96_04405 PF00529 HlyD membrane-fusion protein of T1SS GAY96_04425 PF01883 Iron-sulfur cluster assembly protein GAY96_04430 PF01521 Iron-sulphur cluster biosynthesis GAY96_04435 PF00266 Aminotransferase class-V GAY96_04440 PF01458 Uncharacterized protein family (UPF0051) GAY96_04445 PF00005 ABC transporter GAY96_04450 PF01458 Uncharacterized protein family (UPF0051) GAY96_04465 PF00899 ThiF family GAY96_04470 PF04245 37-kD nucleoid-associated bacterial protein GAY96_04475 PF00156 Phosphoribosyl transferase domain GAY96_04480 PF00860 Permease family GAY96_04490 PF00255 Glutathione peroxidase GAY96_04510 PF03358 NADPH-dependent FMN reductase GAY96_04515 PF03960 ArsC family GAY96_04520 PF03631 Virulence factor BrkB GAY96_04535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GAY96_04535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GAY96_04535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GAY96_04535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GAY96_04545 PF16363 GDP-mannose 4,6 dehydratase GAY96_04550 PF02397 Bacterial sugar transferase GAY96_04555 PF06062 Uncharacterised protein family (UPF0231) GAY96_04560 PF00929 Exonuclease GAY96_04565 PF01979 Amidohydrolase family GAY96_04570 PF00691 OmpA family GAY96_04575 PF00764 Arginosuccinate synthase GAY96_04585 PF01863 Protein of unknown function DUF45 GAY96_04600 PF13193 AMP-binding enzyme C-terminal domain GAY96_04600 PF00501 AMP-binding enzyme GAY96_04600 PF16177 Acetyl-coenzyme A synthetase N-terminus GAY96_04605 PF00072 Response regulator receiver domain GAY96_04605 PF00196 Bacterial regulatory proteins, luxR family GAY96_04620 PF00672 HAMP domain GAY96_04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_04620 PF00512 His Kinase A (phospho-acceptor) domain GAY96_04620 PF01627 Hpt domain GAY96_04620 PF00072 Response regulator receiver domain GAY96_04640 PF00474 Sodium:solute symporter family GAY96_04655 PF01914 MarC family integral membrane protein GAY96_04660 PF01966 HD domain GAY96_04670 PF10502 Signal peptidase, peptidase S26 GAY96_04680 PF00561 alpha/beta hydrolase fold GAY96_04685 PF12833 Helix-turn-helix domain GAY96_04700 PF12833 Helix-turn-helix domain GAY96_04700 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_04720 PF10531 SLBB domain GAY96_04725 PF01751 Toprim domain GAY96_04725 PF01396 Topoisomerase DNA binding C4 zinc finger GAY96_04725 PF01131 DNA topoisomerase GAY96_04725 PF08272 Topoisomerase I zinc-ribbon-like GAY96_04740 PF01513 ATP-NAD kinase GAY96_04745 PF00149 Calcineurin-like phosphoesterase GAY96_04750 PF01694 Rhomboid family GAY96_04750 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease GAY96_04765 PF01433 Peptidase family M1 domain GAY96_04765 PF11940 Domain of unknown function (DUF3458) Ig-like fold GAY96_04765 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GAY96_04770 PF07044 Protein of unknown function (DUF1329) GAY96_04790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_04790 PF12833 Helix-turn-helix domain GAY96_04825 PF00873 AcrB/AcrD/AcrF family GAY96_04830 PF00529 HlyD membrane-fusion protein of T1SS GAY96_04830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GAY96_04835 PF00005 ABC transporter GAY96_04835 PF16326 ABC transporter C-terminal domain GAY96_04835 PF12848 ABC transporter GAY96_04850 PF00378 Enoyl-CoA hydratase/isomerase GAY96_04850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GAY96_04850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GAY96_04855 PF02803 Thiolase, C-terminal domain GAY96_04855 PF00108 Thiolase, N-terminal domain GAY96_04860 PF08240 Alcohol dehydrogenase GroES-like domain GAY96_04860 PF00107 Zinc-binding dehydrogenase GAY96_04865 PF00756 Putative esterase GAY96_04870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_04870 PF08447 PAS fold GAY96_04875 PF03458 UPF0126 domain GAY96_04880 PF00487 Fatty acid desaturase GAY96_04890 PF02463 RecF/RecN/SMC N terminal domain GAY96_04895 PF04354 ZipA, C-terminal FtsZ-binding domain GAY96_04895 PF04354 ZipA, C-terminal FtsZ-binding domain GAY96_04900 PF00533 BRCA1 C Terminus (BRCT) domain GAY96_04900 PF01653 NAD-dependent DNA ligase adenylation domain GAY96_04900 PF03120 NAD-dependent DNA ligase OB-fold domain GAY96_04900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GAY96_04900 PF12826 Helix-hairpin-helix motif GAY96_04905 PF00034 Cytochrome c GAY96_04905 PF03150 Di-haem cytochrome c peroxidase GAY96_04915 PF13519 von Willebrand factor type A domain GAY96_04920 PF07584 Aerotolerance regulator N-terminal GAY96_04920 PF00092 von Willebrand factor type A domain GAY96_04930 PF01882 Protein of unknown function DUF58 GAY96_04935 PF17863 AAA lid domain GAY96_04935 PF07726 ATPase family associated with various cellular activities (AAA) GAY96_04940 PF05088 Bacterial NAD-glutamate dehydrogenase GAY96_04950 PF01180 Dihydroorotate dehydrogenase GAY96_04955 PF04957 Ribosome modulation factor GAY96_04960 PF10672 S-adenosylmethionine-dependent methyltransferase GAY96_04960 PF02926 THUMP domain GAY96_04960 PF01170 Putative RNA methylase family UPF0020 GAY96_04965 PF00873 AcrB/AcrD/AcrF family GAY96_04985 PF01734 Patatin-like phospholipase GAY96_04990 PF00677 Lumazine binding domain GAY96_05005 PF00271 Helicase conserved C-terminal domain GAY96_05005 PF00270 DEAD/DEAH box helicase GAY96_05005 PF04408 Helicase associated domain (HA2) GAY96_05005 PF08482 ATP-dependent helicase C-terminal GAY96_05020 PF00990 Diguanylate cyclase, GGDEF domain GAY96_05020 PF00563 EAL domain GAY96_05020 PF03707 Bacterial signalling protein N terminal repeat GAY96_05030 PF02803 Thiolase, C-terminal domain GAY96_05030 PF00108 Thiolase, N-terminal domain GAY96_05035 PF01206 Sulfurtransferase TusA GAY96_05040 PF00595 PDZ domain GAY96_05040 PF03572 Peptidase family S41 GAY96_05040 PF17804 Tail specific protease N-terminal domain GAY96_05040 PF11818 C-terminal domain of tail specific protease (DUF3340) GAY96_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_05050 PF03466 LysR substrate binding domain GAY96_05060 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_05060 PF07724 AAA domain (Cdc48 subfamily) GAY96_05060 PF17871 AAA lid domain GAY96_05060 PF02861 Clp amino terminal domain, pathogenicity island component GAY96_05060 PF10431 C-terminal, D2-small domain, of ClpB protein GAY96_05070 PF02075 Crossover junction endodeoxyribonuclease RuvC GAY96_05075 PF07499 RuvA, C-terminal domain GAY96_05075 PF01330 RuvA N terminal domain GAY96_05080 PF05496 Holliday junction DNA helicase RuvB P-loop domain GAY96_05080 PF05491 RuvB C-terminal winged helix domain GAY96_05080 PF17864 RuvB AAA lid domain GAY96_05085 PF03061 Thioesterase superfamily GAY96_05090 PF01618 MotA/TolQ/ExbB proton channel family GAY96_05095 PF02472 Biopolymer transport protein ExbD/TolR GAY96_05105 PF07676 WD40-like Beta Propeller Repeat GAY96_05105 PF04052 TolB amino-terminal domain GAY96_05110 PF00691 OmpA family GAY96_05115 PF16331 TolA binding protein trimerisation GAY96_05115 PF13525 Outer membrane lipoprotein GAY96_05130 PF02445 Quinolinate synthetase A protein GAY96_05135 PF01435 Peptidase family M48 GAY96_05135 PF07720 Tetratricopeptide repeat GAY96_05140 PF01206 Sulfurtransferase TusA GAY96_05145 PF01594 AI-2E family transporter GAY96_05150 PF00701 Dihydrodipicolinate synthetase family GAY96_05160 PF00753 Metallo-beta-lactamase superfamily GAY96_05160 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GAY96_05160 PF10996 Beta-Casp domain GAY96_05165 PF01259 SAICAR synthetase GAY96_05185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GAY96_05185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_05195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GAY96_05195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GAY96_05200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GAY96_05205 PF00920 Dehydratase family GAY96_05210 PF01081 KDPG and KHG aldolase GAY96_05215 PF12833 Helix-turn-helix domain GAY96_05215 PF02311 AraC-like ligand binding domain GAY96_05245 PF13667 ThiC-associated domain GAY96_05245 PF01964 Radical SAM ThiC family GAY96_05250 PF01266 FAD dependent oxidoreductase GAY96_05260 PF05690 Thiazole biosynthesis protein ThiG GAY96_05265 PF02581 Thiamine monophosphate synthase GAY96_05270 PF00183 Hsp90 protein GAY96_05290 PF03846 Cell division inhibitor SulA GAY96_05295 PF01726 LexA DNA binding domain GAY96_05295 PF00717 Peptidase S24-like GAY96_05300 PF00440 Bacterial regulatory proteins, tetR family GAY96_05310 PF00933 Glycosyl hydrolase family 3 N terminal domain GAY96_05315 PF01048 Phosphorylase superfamily GAY96_05325 PF02559 CarD-like/TRCF domain GAY96_05325 PF00270 DEAD/DEAH box helicase GAY96_05325 PF00271 Helicase conserved C-terminal domain GAY96_05325 PF03461 TRCF domain GAY96_05325 PF17757 UvrB interaction domain GAY96_05330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GAY96_05330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GAY96_05335 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GAY96_05335 PF11973 NQRA C-terminal domain GAY96_05340 PF03116 NQR2, RnfD, RnfE family GAY96_05345 PF04205 FMN-binding domain GAY96_05350 PF02508 Rnf-Nqr subunit, membrane protein GAY96_05355 PF02508 Rnf-Nqr subunit, membrane protein GAY96_05360 PF00175 Oxidoreductase NAD-binding domain GAY96_05360 PF00970 Oxidoreductase FAD-binding domain GAY96_05360 PF00111 2Fe-2S iron-sulfur cluster binding domain GAY96_05370 PF00106 short chain dehydrogenase GAY96_05380 PF00990 Diguanylate cyclase, GGDEF domain GAY96_05380 PF00072 Response regulator receiver domain GAY96_05385 PF00881 Nitroreductase family GAY96_05390 PF00883 Cytosol aminopeptidase family, catalytic domain GAY96_05390 PF02789 Cytosol aminopeptidase family, N-terminal domain GAY96_05395 PF03739 Lipopolysaccharide export system permease LptF/LptG GAY96_05400 PF03739 Lipopolysaccharide export system permease LptF/LptG GAY96_05410 PF01243 Pyridoxamine 5'-phosphate oxidase GAY96_05410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GAY96_05415 PF03881 Fructosamine kinase GAY96_05425 PF00009 Elongation factor Tu GTP binding domain GAY96_05430 PF01507 Phosphoadenosine phosphosulfate reductase family GAY96_05435 PF02129 X-Pro dipeptidyl-peptidase (S15 family) GAY96_05440 PF03969 AFG1-like ATPase GAY96_05445 PF00753 Metallo-beta-lactamase superfamily GAY96_05450 PF00106 short chain dehydrogenase GAY96_05455 PF00578 AhpC/TSA family GAY96_05460 PF00563 EAL domain GAY96_05460 PF01590 GAF domain GAY96_05460 PF00360 Phytochrome region GAY96_05460 PF00990 Diguanylate cyclase, GGDEF domain GAY96_05465 PF00672 HAMP domain GAY96_05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_05465 PF17202 Single cache domain 3 GAY96_05490 PF02547 Queuosine biosynthesis protein GAY96_05495 PF01702 Queuine tRNA-ribosyltransferase GAY96_05500 PF02699 Preprotein translocase subunit GAY96_05505 PF02355 Protein export membrane protein GAY96_05505 PF07549 SecD/SecF GG Motif GAY96_05505 PF13721 SecD export protein N-terminal TM region GAY96_05510 PF07549 SecD/SecF GG Motif GAY96_05510 PF02355 Protein export membrane protein GAY96_05515 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GAY96_05525 PF01027 Inhibitor of apoptosis-promoting Bax1 GAY96_05540 PF00255 Glutathione peroxidase GAY96_05550 PF00893 Small Multidrug Resistance protein GAY96_05560 PF00141 Peroxidase GAY96_05570 PF00588 SpoU rRNA Methylase family GAY96_05575 PF10458 Valyl tRNA synthetase tRNA binding arm GAY96_05575 PF00133 tRNA synthetases class I (I, L, M and V) GAY96_05575 PF08264 Anticodon-binding domain of tRNA GAY96_05645 PF00133 tRNA synthetases class I (I, L, M and V) GAY96_05645 PF08264 Anticodon-binding domain of tRNA GAY96_05645 PF10458 Valyl tRNA synthetase tRNA binding arm GAY96_05660 PF13847 Methyltransferase domain GAY96_05665 PF07687 Peptidase dimerisation domain GAY96_05665 PF01546 Peptidase family M20/M25/M40 GAY96_05670 PF00156 Phosphoribosyl transferase domain GAY96_05675 PF02321 Outer membrane efflux protein GAY96_05685 PF00873 AcrB/AcrD/AcrF family GAY96_05690 PF00512 His Kinase A (phospho-acceptor) domain GAY96_05690 PF02743 Cache domain GAY96_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_05695 PF00873 AcrB/AcrD/AcrF family GAY96_05705 PF00849 RNA pseudouridylate synthase GAY96_05720 PF03692 Putative zinc- or iron-chelating domain GAY96_05725 PF00672 HAMP domain GAY96_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_05725 PF02743 Cache domain GAY96_05730 PF01784 NIF3 (NGG1p interacting factor 3) GAY96_05735 PF00293 NUDIX domain GAY96_05740 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_05750 PF02222 ATP-grasp domain GAY96_05755 PF00563 EAL domain GAY96_05755 PF01590 GAF domain GAY96_05755 PF00990 Diguanylate cyclase, GGDEF domain GAY96_05755 PF00360 Phytochrome region GAY96_05760 PF13411 MerR HTH family regulatory protein GAY96_05780 PF08267 Cobalamin-independent synthase, N-terminal domain GAY96_05780 PF01717 Cobalamin-independent synthase, Catalytic domain GAY96_05790 PF00487 Fatty acid desaturase GAY96_05795 PF00501 AMP-binding enzyme GAY96_05795 PF13193 AMP-binding enzyme C-terminal domain GAY96_05800 PF08803 Putative mono-oxygenase ydhR GAY96_05805 PF12806 Acetyl-CoA dehydrogenase C-terminal like GAY96_05805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_05805 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_05805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_05815 PF03922 OmpW family GAY96_05820 PF13091 PLD-like domain GAY96_05820 PF13396 Phospholipase_D-nuclease N-terminal GAY96_05825 PF01227 GTP cyclohydrolase I GAY96_05830 PF01177 Asp/Glu/Hydantoin racemase GAY96_05835 PF00990 Diguanylate cyclase, GGDEF domain GAY96_05835 PF07694 5TMR of 5TMR-LYT GAY96_05840 PF03976 Polyphosphate kinase 2 (PPK2) GAY96_05865 PF00916 Sulfate permease family GAY96_05865 PF01740 STAS domain GAY96_05870 PF01022 Bacterial regulatory protein, arsR family GAY96_05875 PF00753 Metallo-beta-lactamase superfamily GAY96_05885 PF01926 50S ribosome-binding GTPase GAY96_05900 PF01722 BolA-like protein GAY96_05910 PF00691 OmpA family GAY96_05930 PF00684 DnaJ central domain GAY96_05930 PF01556 DnaJ C terminal domain GAY96_05930 PF00226 DnaJ domain GAY96_05935 PF01272 Transcription elongation factor, GreA/GreB, C-term GAY96_05935 PF03449 Transcription elongation factor, N-terminal GAY96_05945 PF01171 PP-loop family GAY96_05950 PF00325 Bacterial regulatory proteins, crp family GAY96_05950 PF00027 Cyclic nucleotide-binding domain GAY96_05965 PF00403 Heavy-metal-associated domain GAY96_05975 PF12801 4Fe-4S binding domain GAY96_05975 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase GAY96_05975 PF13746 4Fe-4S dicluster domain GAY96_05980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GAY96_05980 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP GAY96_05995 PF00115 Cytochrome C and Quinol oxidase polypeptide I GAY96_06005 PF00593 TonB dependent receptor GAY96_06005 PF07715 TonB-dependent Receptor Plug Domain GAY96_06025 PF00667 FAD binding domain GAY96_06025 PF00258 Flavodoxin GAY96_06025 PF00175 Oxidoreductase NAD-binding domain GAY96_06030 PF13361 UvrD-like helicase C-terminal domain GAY96_06030 PF00580 UvrD/REP helicase N-terminal domain GAY96_06045 PF00109 Beta-ketoacyl synthase, N-terminal domain GAY96_06045 PF02801 Beta-ketoacyl synthase, C-terminal domain GAY96_06050 PF06167 Glucose-regulated metallo-peptidase M90 GAY96_06055 PF01965 DJ-1/PfpI family GAY96_06055 PF12833 Helix-turn-helix domain GAY96_06060 PF05971 RNA methyltransferase GAY96_06065 PF04261 Dyp-type peroxidase family GAY96_06070 PF00857 Isochorismatase family GAY96_06075 PF05362 Lon protease (S16) C-terminal proteolytic domain GAY96_06075 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_06075 PF02190 ATP-dependent protease La (LON) substrate-binding domain GAY96_06080 PF00291 Pyridoxal-phosphate dependent enzyme GAY96_06085 PF00849 RNA pseudouridylate synthase GAY96_06085 PF01479 S4 domain GAY96_06090 PF00919 Uncharacterized protein family UPF0004 GAY96_06090 PF18693 TRAM domain GAY96_06090 PF04055 Radical SAM superfamily GAY96_06100 PF18030 RimK PreATP-grasp domain GAY96_06100 PF08443 RimK-like ATP-grasp domain GAY96_06105 PF01820 D-ala D-ala ligase N-terminus GAY96_06105 PF07478 D-ala D-ala ligase C-terminus GAY96_06130 PF16123 Hydroxyacylglutathione hydrolase C-terminus GAY96_06130 PF00753 Metallo-beta-lactamase superfamily GAY96_06140 PF02938 GAD domain GAY96_06140 PF00152 tRNA synthetases class II (D, K and N) GAY96_06140 PF01336 OB-fold nucleic acid binding domain GAY96_06145 PF01553 Acyltransferase GAY96_06150 PF00330 Aconitase family (aconitate hydratase) GAY96_06150 PF06434 Aconitate hydratase 2 N-terminus GAY96_06150 PF11791 Aconitate B N-terminal domain GAY96_06155 PF00694 Aconitase C-terminal domain GAY96_06155 PF00330 Aconitase family (aconitate hydratase) GAY96_06160 PF12728 Helix-turn-helix domain GAY96_06160 PF02661 Fic/DOC family GAY96_06165 PF06434 Aconitate hydratase 2 N-terminus GAY96_06165 PF00330 Aconitase family (aconitate hydratase) GAY96_06165 PF11791 Aconitate B N-terminal domain GAY96_06170 PF01568 Molydopterin dinucleotide binding domain GAY96_06170 PF00384 Molybdopterin oxidoreductase GAY96_06170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GAY96_06175 PF11890 Domain of unknown function (DUF3410) GAY96_06175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GAY96_06175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GAY96_06180 PF00005 ABC transporter GAY96_06180 PF17845 FbpC C-terminal regulatory nucleotide binding domain GAY96_06200 PF00155 Aminotransferase class I and II GAY96_06205 PF01641 SelR domain GAY96_06210 PF00255 Glutathione peroxidase GAY96_06215 PF01047 MarR family GAY96_06220 PF00072 Response regulator receiver domain GAY96_06220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_06250 PF00990 Diguanylate cyclase, GGDEF domain GAY96_06250 PF00072 Response regulator receiver domain GAY96_06255 PF03471 Transporter associated domain GAY96_06255 PF02080 TrkA-C domain GAY96_06255 PF00999 Sodium/hydrogen exchanger family GAY96_06260 PF00793 DAHP synthetase I family GAY96_06265 PF03466 LysR substrate binding domain GAY96_06265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_06275 PF00072 Response regulator receiver domain GAY96_06275 PF00486 Transcriptional regulatory protein, C terminal GAY96_06285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GAY96_06285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GAY96_06295 PF00300 Histidine phosphatase superfamily (branch 1) GAY96_06310 PF00849 RNA pseudouridylate synthase GAY96_06315 PF01136 Peptidase family U32 GAY96_06315 PF16325 Peptidase family U32 C-terminal domain GAY96_06330 PF05175 Methyltransferase small domain GAY96_06345 PF01515 Phosphate acetyl/butaryl transferase GAY96_06350 PF00582 Universal stress protein family GAY96_06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_06360 PF00330 Aconitase family (aconitate hydratase) GAY96_06365 PF00694 Aconitase C-terminal domain GAY96_06370 PF00180 Isocitrate/isopropylmalate dehydrogenase GAY96_06375 PF01118 Semialdehyde dehydrogenase, NAD binding domain GAY96_06375 PF02774 Semialdehyde dehydrogenase, dimerisation domain GAY96_06385 PF01416 tRNA pseudouridine synthase GAY96_06390 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GAY96_06395 PF00291 Pyridoxal-phosphate dependent enzyme GAY96_06400 PF00290 Tryptophan synthase alpha chain GAY96_06405 PF02875 Mur ligase family, glutamate ligase domain GAY96_06405 PF08245 Mur ligase middle domain GAY96_06415 PF02674 Colicin V production protein GAY96_06420 PF00156 Phosphoribosyl transferase domain GAY96_06425 PF01053 Cys/Met metabolism PLP-dependent enzyme GAY96_06435 PF07726 ATPase family associated with various cellular activities (AAA) GAY96_06435 PF17863 AAA lid domain GAY96_06445 PF11992 Domain of unknown function (DUF3488) GAY96_06445 PF13559 Domain of unknown function (DUF4129) GAY96_06445 PF01841 Transglutaminase-like superfamily GAY96_06455 PF00085 Thioredoxin GAY96_06460 PF00248 Aldo/keto reductase family GAY96_06465 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GAY96_06465 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_06470 PF01554 MatE GAY96_06475 PF00270 DEAD/DEAH box helicase GAY96_06475 PF00271 Helicase conserved C-terminal domain GAY96_06490 PF00664 ABC transporter transmembrane region GAY96_06490 PF00005 ABC transporter GAY96_06495 PF01367 5'-3' exonuclease, C-terminal SAM fold GAY96_06495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GAY96_06505 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GAY96_06525 PF00512 His Kinase A (phospho-acceptor) domain GAY96_06525 PF01627 Hpt domain GAY96_06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_06525 PF00072 Response regulator receiver domain GAY96_06530 PF05362 Lon protease (S16) C-terminal proteolytic domain GAY96_06530 PF13654 AAA domain GAY96_06545 PF12170 DNA polymerase III tau subunit V interacting with alpha GAY96_06545 PF12169 DNA polymerase III subunits gamma and tau domain III GAY96_06545 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GAY96_06550 PF02575 YbaB/EbfC DNA-binding family GAY96_06555 PF02132 RecR protein GAY96_06555 PF13662 Toprim domain GAY96_06560 PF01612 3'-5' exonuclease GAY96_06560 PF00570 HRDC domain GAY96_06565 PF05166 YcgL domain GAY96_06570 PF03692 Putative zinc- or iron-chelating domain GAY96_06590 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_06590 PF17862 AAA+ lid domain GAY96_06590 PF01434 Peptidase family M41 GAY96_06650 PF01575 MaoC like domain GAY96_06655 PF12146 Serine aminopeptidase, S33 GAY96_06660 PF00501 AMP-binding enzyme GAY96_06660 PF13193 AMP-binding enzyme C-terminal domain GAY96_06665 PF00270 DEAD/DEAH box helicase GAY96_06665 PF11898 Domain of unknown function (DUF3418) GAY96_06665 PF04408 Helicase associated domain (HA2) GAY96_06665 PF00271 Helicase conserved C-terminal domain GAY96_06665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold GAY96_06670 PF04333 MlaA lipoprotein GAY96_06680 PF08496 Peptidase family S49 N-terminal GAY96_06680 PF01343 Peptidase family S49 GAY96_06690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GAY96_06690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GAY96_06695 PF03009 Glycerophosphoryl diester phosphodiesterase family GAY96_06700 PF01554 MatE GAY96_06705 PF02965 Vitamin B12 dependent methionine synthase, activation domain GAY96_06705 PF02310 B12 binding domain GAY96_06705 PF02607 B12 binding domain GAY96_06705 PF00809 Pterin binding enzyme GAY96_06705 PF02574 Homocysteine S-methyltransferase GAY96_06710 PF01521 Iron-sulphur cluster biosynthesis GAY96_06710 PF01106 NifU-like domain GAY96_06720 PF01012 Electron transfer flavoprotein domain GAY96_06725 PF01012 Electron transfer flavoprotein domain GAY96_06725 PF00766 Electron transfer flavoprotein FAD-binding domain GAY96_06730 PF00437 Type II/IV secretion system protein GAY96_06735 PF00482 Type II secretion system (T2SS), protein F GAY96_06740 PF07963 Prokaryotic N-terminal methylation motif GAY96_06740 PF08334 Type II secretion system (T2SS), protein G GAY96_06745 PF12019 Type II transport protein GspH GAY96_06745 PF07963 Prokaryotic N-terminal methylation motif GAY96_06750 PF02501 Type II secretion system (T2SS), protein I GAY96_06750 PF07963 Prokaryotic N-terminal methylation motif GAY96_06755 PF07963 Prokaryotic N-terminal methylation motif GAY96_06755 PF11612 Type II secretion system (T2SS), protein J GAY96_06760 PF03934 Type II secretion system (T2SS), protein K GAY96_06775 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_06775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GAY96_06780 PF00271 Helicase conserved C-terminal domain GAY96_06780 PF12137 RNA polymerase recycling family C-terminal GAY96_06780 PF00176 SNF2 family N-terminal domain GAY96_06780 PF18339 RapA N-terminal Tudor like domain 1 GAY96_06780 PF18337 RapA N-terminal Tudor like domain GAY96_06790 PF01545 Cation efflux family GAY96_06795 PF02583 Metal-sensitive transcriptional repressor GAY96_06805 PF00440 Bacterial regulatory proteins, tetR family GAY96_06810 PF12146 Serine aminopeptidase, S33 GAY96_06815 PF00589 Phage integrase family GAY96_06815 PF02899 Phage integrase, N-terminal SAM-like domain GAY96_06820 PF00106 short chain dehydrogenase GAY96_06825 PF02568 Thiamine biosynthesis protein (ThiI) GAY96_06825 PF02926 THUMP domain GAY96_06830 PF07715 TonB-dependent Receptor Plug Domain GAY96_06830 PF00593 TonB dependent receptor GAY96_06835 PF03372 Endonuclease/Exonuclease/phosphatase family GAY96_06845 PF03544 Gram-negative bacterial TonB protein C-terminal GAY96_06850 PF02472 Biopolymer transport protein ExbD/TolR GAY96_06855 PF01618 MotA/TolQ/ExbB proton channel family GAY96_06860 PF01618 MotA/TolQ/ExbB proton channel family GAY96_06870 PF08367 Peptidase M16C associated GAY96_06870 PF00675 Insulinase (Peptidase family M16) GAY96_06870 PF05193 Peptidase M16 inactive domain GAY96_06875 PF00266 Aminotransferase class-V GAY96_06885 PF09115 DNA polymerase III, delta subunit, C terminal GAY96_06890 PF02223 Thymidylate kinase GAY96_06895 PF02618 YceG-like family GAY96_06900 PF01063 Amino-transferase class IV GAY96_06905 PF02801 Beta-ketoacyl synthase, C-terminal domain GAY96_06905 PF00109 Beta-ketoacyl synthase, N-terminal domain GAY96_06910 PF00550 Phosphopantetheine attachment site GAY96_06920 PF00698 Acyl transferase domain GAY96_06925 PF02504 Fatty acid synthesis protein GAY96_06930 PF01783 Ribosomal L32p protein family GAY96_06935 PF02620 Large ribosomal RNA subunit accumulation protein YceD GAY96_06940 PF01343 Peptidase family S49 GAY96_06945 PF13419 Haloacid dehalogenase-like hydrolase GAY96_06950 PF00849 RNA pseudouridylate synthase GAY96_06950 PF01479 S4 domain GAY96_06955 PF12111 Polyribonucleotide phosphorylase C terminal GAY96_06955 PF10150 Ribonuclease E/G family GAY96_06955 PF00575 S1 RNA binding domain GAY96_06965 PF04303 PrpF protein GAY96_06970 PF00330 Aconitase family (aconitate hydratase) GAY96_06970 PF00694 Aconitase C-terminal domain GAY96_06975 PF00285 Citrate synthase, C-terminal domain GAY96_06985 PF07729 FCD domain GAY96_06985 PF00392 Bacterial regulatory proteins, gntR family GAY96_06990 PF03737 Aldolase/RraA GAY96_07000 PF00391 PEP-utilising enzyme, mobile domain GAY96_07000 PF02896 PEP-utilising enzyme, TIM barrel domain GAY96_07000 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GAY96_07005 PF03618 Kinase/pyrophosphorylase GAY96_07040 PF04715 Anthranilate synthase component I, N terminal region GAY96_07040 PF00425 chorismate binding enzyme GAY96_07050 PF01507 Phosphoadenosine phosphosulfate reductase family GAY96_07080 PF01066 CDP-alcohol phosphatidyltransferase GAY96_07085 PF02151 UvrB/uvrC motif GAY96_07085 PF08459 UvrC Helix-hairpin-helix N-terminal GAY96_07085 PF01541 GIY-YIG catalytic domain GAY96_07090 PF00196 Bacterial regulatory proteins, luxR family GAY96_07090 PF00072 Response regulator receiver domain GAY96_07095 PF13380 CoA binding domain GAY96_07095 PF13607 Succinyl-CoA ligase like flavodoxin domain GAY96_07095 PF00583 Acetyltransferase (GNAT) family GAY96_07100 PF00850 Histone deacetylase domain GAY96_07110 PF02635 DsrE/DsrF-like family GAY96_07115 PF02635 DsrE/DsrF-like family GAY96_07125 PF04358 DsrC like protein GAY96_07130 PF02885 Glycosyl transferase family, helical bundle domain GAY96_07130 PF00591 Glycosyl transferase family, a/b domain GAY96_07135 PF00672 HAMP domain GAY96_07135 PF02743 Cache domain GAY96_07135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_07140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GAY96_07140 PF14824 Sirohaem biosynthesis protein central GAY96_07140 PF10414 Sirohaem synthase dimerisation region GAY96_07145 PF02403 Seryl-tRNA synthetase N-terminal domain GAY96_07145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GAY96_07150 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GAY96_07155 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_07155 PF16193 AAA C-terminal domain GAY96_07155 PF12002 MgsA AAA+ ATPase C terminal GAY96_07160 PF03548 Outer membrane lipoprotein carrier protein LolA GAY96_07165 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GAY96_07165 PF01580 FtsK/SpoIIIE family GAY96_07165 PF09397 Ftsk gamma domain GAY96_07165 PF17854 FtsK alpha domain GAY96_07170 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GAY96_07175 PF04377 Arginine-tRNA-protein transferase, C terminus GAY96_07175 PF04376 Arginine-tRNA-protein transferase, N terminus GAY96_07180 PF01176 Translation initiation factor 1A / IF-1 GAY96_07185 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_07185 PF07724 AAA domain (Cdc48 subfamily) GAY96_07185 PF17871 AAA lid domain GAY96_07185 PF02861 Clp amino terminal domain, pathogenicity island component GAY96_07185 PF10431 C-terminal, D2-small domain, of ClpB protein GAY96_07190 PF02617 ATP-dependent Clp protease adaptor protein ClpS GAY96_07195 PF00313 'Cold-shock' DNA-binding domain GAY96_07200 PF03971 Monomeric isocitrate dehydrogenase GAY96_07205 PF00849 RNA pseudouridylate synthase GAY96_07210 PF00293 NUDIX domain GAY96_07220 PF04356 Protein of unknown function (DUF489) GAY96_07225 PF01207 Dihydrouridine synthase (Dus) GAY96_07230 PF00923 Transaldolase/Fructose-6-phosphate aldolase GAY96_07245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GAY96_07245 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_07255 PF02424 ApbE family GAY96_07260 PF01022 Bacterial regulatory protein, arsR family GAY96_07280 PF00929 Exonuclease GAY96_07285 PF00075 RNase H GAY96_07295 PF01464 Transglycosylase SLT domain GAY96_07295 PF01476 LysM domain GAY96_07300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GAY96_07315 PF00216 Bacterial DNA-binding protein GAY96_07320 PF05362 Lon protease (S16) C-terminal proteolytic domain GAY96_07320 PF02190 ATP-dependent protease La (LON) substrate-binding domain GAY96_07320 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_07325 PF07724 AAA domain (Cdc48 subfamily) GAY96_07325 PF10431 C-terminal, D2-small domain, of ClpB protein GAY96_07325 PF06689 ClpX C4-type zinc finger GAY96_07330 PF00574 Clp protease GAY96_07335 PF05698 Bacterial trigger factor protein (TF) C-terminus GAY96_07335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_07335 PF05697 Bacterial trigger factor protein (TF) GAY96_07355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GAY96_07355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GAY96_07360 PF09190 DALR domain GAY96_07360 PF01406 tRNA synthetases class I (C) catalytic domain GAY96_07365 PF00749 tRNA synthetases class I (E and Q), catalytic domain GAY96_07365 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GAY96_07370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GAY96_07375 PF00149 Calcineurin-like phosphoesterase GAY96_07380 PF01565 FAD binding domain GAY96_07380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GAY96_07385 PF01451 Low molecular weight phosphotyrosine protein phosphatase GAY96_07390 PF03966 Trm112p-like protein GAY96_07395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GAY96_07400 PF00664 ABC transporter transmembrane region GAY96_07400 PF00005 ABC transporter GAY96_07405 PF02472 Biopolymer transport protein ExbD/TolR GAY96_07410 PF01618 MotA/TolQ/ExbB proton channel family GAY96_07415 PF03772 Competence protein GAY96_07415 PF00753 Metallo-beta-lactamase superfamily GAY96_07425 PF00005 ABC transporter GAY96_07430 PF02687 FtsX-like permease family GAY96_07430 PF12704 MacB-like periplasmic core domain GAY96_07445 PF13307 Helicase C-terminal domain GAY96_07445 PF06733 DEAD_2 GAY96_07455 PF13401 AAA domain GAY96_07455 PF01471 Putative peptidoglycan binding domain GAY96_07470 PF01274 Malate synthase GAY96_07485 PF00206 Lyase GAY96_07485 PF08328 Adenylosuccinate lyase C-terminal GAY96_07490 PF08007 Cupin superfamily protein GAY96_07495 PF13673 Acetyltransferase (GNAT) domain GAY96_07500 PF02348 Cytidylyltransferase GAY96_07525 PF00749 tRNA synthetases class I (E and Q), catalytic domain GAY96_07540 PF00211 Adenylate and Guanylate cyclase catalytic domain GAY96_07540 PF00072 Response regulator receiver domain GAY96_07545 PF14489 QueF-like protein GAY96_07545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GAY96_07550 PF01061 ABC-2 type transporter GAY96_07555 PF00005 ABC transporter GAY96_07565 PF16177 Acetyl-coenzyme A synthetase N-terminus GAY96_07565 PF00501 AMP-binding enzyme GAY96_07565 PF13193 AMP-binding enzyme C-terminal domain GAY96_07570 PF02629 CoA binding domain GAY96_07570 PF00549 CoA-ligase GAY96_07575 PF08442 ATP-grasp domain GAY96_07575 PF00549 CoA-ligase GAY96_07580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GAY96_07580 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_07585 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GAY96_07585 PF00364 Biotin-requiring enzyme GAY96_07585 PF02817 e3 binding domain GAY96_07590 PF00676 Dehydrogenase E1 component GAY96_07590 PF16870 2-oxoglutarate dehydrogenase C-terminal GAY96_07590 PF02779 Transketolase, pyrimidine binding domain GAY96_07590 PF16078 2-oxoglutarate dehydrogenase N-terminus GAY96_07595 PF13085 2Fe-2S iron-sulfur cluster binding domain GAY96_07600 PF00890 FAD binding domain GAY96_07600 PF02910 Fumarate reductase flavoprotein C-term GAY96_07605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GAY96_07610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GAY96_07615 PF00285 Citrate synthase, C-terminal domain GAY96_07620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GAY96_07620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GAY96_07625 PF03476 MOSC N-terminal beta barrel domain GAY96_07625 PF00111 2Fe-2S iron-sulfur cluster binding domain GAY96_07625 PF03473 MOSC domain GAY96_07630 PF01584 CheW-like domain GAY96_07630 PF00072 Response regulator receiver domain GAY96_07635 PF00563 EAL domain GAY96_07635 PF08668 HDOD domain GAY96_07640 PF01266 FAD dependent oxidoreductase GAY96_07640 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GAY96_07650 PF00109 Beta-ketoacyl synthase, N-terminal domain GAY96_07650 PF02801 Beta-ketoacyl synthase, C-terminal domain GAY96_07655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GAY96_07655 PF02785 Biotin carboxylase C-terminal domain GAY96_07655 PF00289 Biotin carboxylase, N-terminal domain GAY96_07660 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GAY96_07660 PF18381 YcaO cyclodehydratase C-terminal domain GAY96_07680 PF13538 UvrD-like helicase C-terminal domain GAY96_07685 PF12705 PD-(D/E)XK nuclease superfamily GAY96_07685 PF00580 UvrD/REP helicase N-terminal domain GAY96_07685 PF13361 UvrD-like helicase C-terminal domain GAY96_07690 PF17946 RecC C-terminal domain GAY96_07700 PF11842 Domain of unknown function (DUF3362) GAY96_07700 PF04055 Radical SAM superfamily GAY96_07700 PF08497 Radical SAM N-terminal GAY96_07710 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_07715 PF00005 ABC transporter GAY96_07720 PF03861 ANTAR domain GAY96_07720 PF08376 Nitrate and nitrite sensing GAY96_07730 PF04324 BFD-like [2Fe-2S] binding domain GAY96_07730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GAY96_07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_07730 PF18267 Rubredoxin NAD+ reductase C-terminal domain GAY96_07735 PF13806 Rieske-like [2Fe-2S] domain GAY96_07740 PF04324 BFD-like [2Fe-2S] binding domain GAY96_07740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GAY96_07740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GAY96_07740 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_07740 PF18267 Rubredoxin NAD+ reductase C-terminal domain GAY96_07745 PF01568 Molydopterin dinucleotide binding domain GAY96_07745 PF04324 BFD-like [2Fe-2S] binding domain GAY96_07745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GAY96_07745 PF00384 Molybdopterin oxidoreductase GAY96_07750 PF10414 Sirohaem synthase dimerisation region GAY96_07750 PF14824 Sirohaem biosynthesis protein central GAY96_07750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GAY96_07770 PF03352 Methyladenine glycosylase GAY96_07780 PF03129 Anticodon binding domain GAY96_07780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GAY96_07780 PF04073 Aminoacyl-tRNA editing domain GAY96_07785 PF01464 Transglycosylase SLT domain GAY96_07785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GAY96_07790 PF11867 Domain of unknown function (DUF3387) GAY96_07790 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GAY96_07790 PF18766 SWI2/SNF2 ATPase GAY96_07805 PF01420 Type I restriction modification DNA specificity domain GAY96_07815 PF00144 Beta-lactamase GAY96_07865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GAY96_07865 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_07870 PF10609 NUBPL iron-transfer P-loop NTPase GAY96_07880 PF00005 ABC transporter GAY96_07880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GAY96_07885 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_07885 PF12911 N-terminal TM domain of oligopeptide transport permease C GAY96_07890 PF00528 Binding-protein-dependent transport system inner membrane component GAY96_07900 PF02508 Rnf-Nqr subunit, membrane protein GAY96_07905 PF04060 Putative Fe-S cluster GAY96_07910 PF10531 SLBB domain GAY96_07910 PF12838 4Fe-4S dicluster domain GAY96_07910 PF13375 RnfC Barrel sandwich hybrid domain GAY96_07910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GAY96_07915 PF03116 NQR2, RnfD, RnfE family GAY96_07920 PF04205 FMN-binding domain GAY96_07925 PF02508 Rnf-Nqr subunit, membrane protein GAY96_07940 PF00581 Rhodanese-like domain GAY96_07940 PF17773 UPF0176 acylphosphatase like domain GAY96_07945 PF07152 YaeQ protein GAY96_07950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_07950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GAY96_07960 PF03435 Saccharopine dehydrogenase NADP binding domain GAY96_07970 PF00313 'Cold-shock' DNA-binding domain GAY96_07985 PF00892 EamA-like transporter family GAY96_07990 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB GAY96_07995 PF01381 Helix-turn-helix GAY96_08005 PF00809 Pterin binding enzyme GAY96_08010 PF01636 Phosphotransferase enzyme family GAY96_08015 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase GAY96_08025 PF02540 NAD synthase GAY96_08025 PF00958 GMP synthase C terminal domain GAY96_08025 PF00117 Glutamine amidotransferase class-I GAY96_08030 PF00571 CBS domain GAY96_08030 PF00478 IMP dehydrogenase / GMP reductase domain GAY96_08050 PF02601 Exonuclease VII, large subunit GAY96_08050 PF13742 OB-fold nucleic acid binding domain GAY96_08050 PF02601 Exonuclease VII, large subunit GAY96_08050 PF13742 OB-fold nucleic acid binding domain GAY96_08055 PF04225 Opacity-associated protein A LysM-like domain GAY96_08055 PF01551 Peptidase family M23 GAY96_08065 PF01966 HD domain GAY96_08065 PF11871 Domain of unknown function (DUF3391) GAY96_08080 PF05958 tRNA (Uracil-5-)-methyltransferase GAY96_08085 PF00271 Helicase conserved C-terminal domain GAY96_08085 PF03880 DbpA RNA binding domain GAY96_08085 PF00270 DEAD/DEAH box helicase GAY96_08090 PF01925 Sulfite exporter TauE/SafE GAY96_08095 PF00924 Mechanosensitive ion channel GAY96_08115 PF13194 Domain of unknown function (DUF4010) GAY96_08125 PF08411 Exonuclease C-terminal GAY96_08125 PF00929 Exonuclease GAY96_08130 PF00561 alpha/beta hydrolase fold GAY96_08130 PF08386 TAP-like protein GAY96_08150 PF03883 Peroxide stress protein YaaA GAY96_08160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_08160 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_08160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_08165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_08165 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_08165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_08170 PF00501 AMP-binding enzyme GAY96_08170 PF13193 AMP-binding enzyme C-terminal domain GAY96_08175 PF00731 AIR carboxylase GAY96_08180 PF02222 ATP-grasp domain GAY96_08180 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GAY96_08185 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) GAY96_08195 PF00005 ABC transporter GAY96_08195 PF02687 FtsX-like permease family GAY96_08195 PF12704 MacB-like periplasmic core domain GAY96_08200 PF02687 FtsX-like permease family GAY96_08200 PF12704 MacB-like periplasmic core domain GAY96_08200 PF00005 ABC transporter GAY96_08205 PF00005 ABC transporter GAY96_08205 PF02687 FtsX-like permease family GAY96_08205 PF12704 MacB-like periplasmic core domain GAY96_08210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_08210 PF08447 PAS fold GAY96_08210 PF13426 PAS domain GAY96_08220 PF13438 Domain of unknown function (DUF4113) GAY96_08220 PF00817 impB/mucB/samB family GAY96_08220 PF11799 impB/mucB/samB family C-terminal domain GAY96_08220 PF11798 IMS family HHH motif GAY96_08230 PF00717 Peptidase S24-like GAY96_08240 PF11867 Domain of unknown function (DUF3387) GAY96_08240 PF18766 SWI2/SNF2 ATPase GAY96_08240 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GAY96_08255 PF13784 Fic/DOC family N-terminal GAY96_08255 PF02661 Fic/DOC family GAY96_08260 PF12161 HsdM N-terminal domain GAY96_08260 PF02384 N-6 DNA Methylase GAY96_08320 PF00216 Bacterial DNA-binding protein GAY96_08325 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GAY96_08325 PF03483 B3/4 domain GAY96_08325 PF03484 tRNA synthetase B5 domain GAY96_08325 PF01588 Putative tRNA binding domain GAY96_08325 PF03147 Ferredoxin-fold anticodon binding domain GAY96_08330 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GAY96_08330 PF01409 tRNA synthetases class II core domain (F) GAY96_08335 PF00453 Ribosomal protein L20 GAY96_08340 PF01632 Ribosomal protein L35 GAY96_08345 PF00707 Translation initiation factor IF-3, C-terminal domain GAY96_08345 PF05198 Translation initiation factor IF-3, N-terminal domain GAY96_08350 PF03129 Anticodon binding domain GAY96_08350 PF02824 TGS domain GAY96_08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GAY96_08350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GAY96_08355 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_08355 PF12833 Helix-turn-helix domain GAY96_08360 PF04116 Fatty acid hydroxylase superfamily GAY96_08365 PF01965 DJ-1/PfpI family GAY96_08370 PF00994 Probable molybdopterin binding domain GAY96_08375 PF06450 Bacterial Na+/H+ antiporter B (NhaB) GAY96_08380 PF01814 Hemerythrin HHE cation binding domain GAY96_08380 PF04405 Domain of Unknown function (DUF542) GAY96_08385 PF02954 Bacterial regulatory protein, Fis family GAY96_08385 PF00158 Sigma-54 interaction domain GAY96_08390 PF00899 ThiF family GAY96_08395 PF03453 MoeA N-terminal region (domain I and II) GAY96_08395 PF03454 MoeA C-terminal region (domain IV) GAY96_08395 PF00994 Probable molybdopterin binding domain GAY96_08400 PF00196 Bacterial regulatory proteins, luxR family GAY96_08400 PF00072 Response regulator receiver domain GAY96_08405 PF06463 Molybdenum Cofactor Synthesis C GAY96_08405 PF04055 Radical SAM superfamily GAY96_08410 PF12804 MobA-like NTP transferase domain GAY96_08415 PF00994 Probable molybdopterin binding domain GAY96_08420 PF01967 MoaC family GAY96_08425 PF02597 ThiS family GAY96_08430 PF02391 MoaE protein GAY96_08455 PF07690 Major Facilitator Superfamily GAY96_08465 PF07690 Major Facilitator Superfamily GAY96_08475 PF09312 SurA N-terminal domain GAY96_08475 PF00639 PPIC-type PPIASE domain GAY96_08480 PF02665 Nitrate reductase gamma subunit GAY96_08485 PF02613 Nitrate reductase delta subunit GAY96_08490 PF13247 4Fe-4S dicluster domain GAY96_08490 PF14711 Respiratory nitrate reductase beta C-terminal GAY96_08495 PF00384 Molybdopterin oxidoreductase GAY96_08495 PF01568 Molydopterin dinucleotide binding domain GAY96_08495 PF14710 Respiratory nitrate reductase alpha N-terminal GAY96_08500 PF00672 HAMP domain GAY96_08500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_08500 PF07730 Histidine kinase GAY96_08500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GAY96_08520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GAY96_08525 PF00593 TonB dependent receptor GAY96_08525 PF07715 TonB-dependent Receptor Plug Domain GAY96_08530 PF07728 AAA domain (dynein-related subfamily) GAY96_08530 PF08406 CbbQ/NirQ/NorQ C-terminal GAY96_08535 PF00034 Cytochrome c GAY96_08540 PF00115 Cytochrome C and Quinol oxidase polypeptide I GAY96_08555 PF00510 Cytochrome c oxidase subunit III GAY96_08565 PF00034 Cytochrome c GAY96_08570 PF08859 DGC domain GAY96_08575 PF01136 Peptidase family U32 GAY96_08580 PF01136 Peptidase family U32 GAY96_08585 PF02036 SCP-2 sterol transfer family GAY96_08600 PF02151 UvrB/uvrC motif GAY96_08600 PF04851 Type III restriction enzyme, res subunit GAY96_08600 PF00271 Helicase conserved C-terminal domain GAY96_08600 PF17757 UvrB interaction domain GAY96_08600 PF12344 Ultra-violet resistance protein B GAY96_08605 PF00155 Aminotransferase class I and II GAY96_08610 PF00308 Bacterial dnaA protein GAY96_08620 PF02769 AIR synthase related protein, C-terminal domain GAY96_08620 PF00586 AIR synthase related protein, N-terminal domain GAY96_08625 PF00551 Formyl transferase GAY96_08635 PF00575 S1 RNA binding domain GAY96_08640 PF02224 Cytidylate kinase GAY96_08645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GAY96_08650 PF00155 Aminotransferase class I and II GAY96_08655 PF01842 ACT domain GAY96_08655 PF01817 Chorismate mutase type II GAY96_08655 PF00800 Prephenate dehydratase GAY96_08660 PF00266 Aminotransferase class-V GAY96_08665 PF00521 DNA gyrase/topoisomerase IV, subunit A GAY96_08665 PF03989 DNA gyrase C-terminal domain, beta-propeller GAY96_08675 PF04055 Radical SAM superfamily GAY96_08675 PF06969 HemN C-terminal domain GAY96_08700 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GAY96_08710 PF00871 Acetokinase family GAY96_08715 PF01515 Phosphate acetyl/butaryl transferase GAY96_08715 PF07085 DRTGG domain GAY96_08720 PF01553 Acyltransferase GAY96_08725 PF00360 Phytochrome region GAY96_08725 PF00990 Diguanylate cyclase, GGDEF domain GAY96_08725 PF00563 EAL domain GAY96_08725 PF01590 GAF domain GAY96_08735 PF01545 Cation efflux family GAY96_08735 PF16916 Dimerisation domain of Zinc Transporter GAY96_08760 PF00072 Response regulator receiver domain GAY96_08760 PF00486 Transcriptional regulatory protein, C terminal GAY96_08770 PF00675 Insulinase (Peptidase family M16) GAY96_08770 PF05193 Peptidase M16 inactive domain GAY96_08770 PF16187 Middle or third domain of peptidase_M16 GAY96_08775 PF00106 short chain dehydrogenase GAY96_08795 PF00672 HAMP domain GAY96_08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_08810 PF00175 Oxidoreductase NAD-binding domain GAY96_08810 PF00970 Oxidoreductase FAD-binding domain GAY96_08815 PF03466 LysR substrate binding domain GAY96_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_08825 PF03918 Cytochrome C biogenesis protein GAY96_08830 PF08534 Redoxin GAY96_08835 PF01578 Cytochrome C assembly protein GAY96_08835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GAY96_08840 PF03100 CcmE GAY96_08850 PF01578 Cytochrome C assembly protein GAY96_08855 PF03379 CcmB protein GAY96_08860 PF00005 ABC transporter GAY96_08870 PF01312 FlhB HrpN YscU SpaS Family GAY96_08880 PF02308 MgtC family GAY96_08885 PF01979 Amidohydrolase family GAY96_08895 PF13419 Haloacid dehalogenase-like hydrolase GAY96_08900 PF00106 short chain dehydrogenase GAY96_08905 PF00990 Diguanylate cyclase, GGDEF domain GAY96_08910 PF00849 RNA pseudouridylate synthase GAY96_08910 PF01479 S4 domain GAY96_08915 PF04079 Segregation and condensation complex subunit ScpB GAY96_08920 PF02616 Segregation and condensation protein ScpA GAY96_08925 PF00579 tRNA synthetases class I (W and Y) GAY96_08930 PF01300 Telomere recombination GAY96_08935 PF02811 PHP domain GAY96_08940 PF03795 YCII-related domain GAY96_08950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GAY96_08960 PF01266 FAD dependent oxidoreductase GAY96_08960 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GAY96_08970 PF06794 Uncharacterised protein family (UPF0270) GAY96_08980 PF00487 Fatty acid desaturase GAY96_08985 PF00175 Oxidoreductase NAD-binding domain GAY96_08985 PF00970 Oxidoreductase FAD-binding domain GAY96_08985 PF00111 2Fe-2S iron-sulfur cluster binding domain GAY96_08990 PF00463 Isocitrate lyase family GAY96_09005 PF01351 Ribonuclease HII GAY96_09010 PF02684 Lipid-A-disaccharide synthetase GAY96_09015 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GAY96_09015 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_09020 PF07977 FabA-like domain GAY96_09025 PF00132 Bacterial transferase hexapeptide (six repeats) GAY96_09025 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GAY96_09030 PF03938 Outer membrane protein (OmpH-like) GAY96_09035 PF07244 Surface antigen variable number repeat GAY96_09035 PF01103 Surface antigen GAY96_09040 PF02163 Peptidase family M50 GAY96_09040 PF13180 PDZ domain GAY96_09040 PF17820 PDZ domain GAY96_09045 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GAY96_09045 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GAY96_09045 PF13288 DXP reductoisomerase C-terminal domain GAY96_09055 PF01255 Putative undecaprenyl diphosphate synthase GAY96_09060 PF01765 Ribosome recycling factor GAY96_09065 PF00696 Amino acid kinase family GAY96_09070 PF00889 Elongation factor TS GAY96_09075 PF00318 Ribosomal protein S2 GAY96_09080 PF00557 Metallopeptidase family M24 GAY96_09085 PF01842 ACT domain GAY96_09085 PF08335 GlnD PII-uridylyltransferase GAY96_09085 PF01966 HD domain GAY96_09085 PF01909 Nucleotidyltransferase domain GAY96_09090 PF02678 Pirin GAY96_09090 PF05726 Pirin C-terminal cupin domain GAY96_09095 PF00270 DEAD/DEAH box helicase GAY96_09095 PF00271 Helicase conserved C-terminal domain GAY96_09115 PF06508 Queuosine biosynthesis protein QueC GAY96_09125 PF08659 KR domain GAY96_09125 PF14765 Polyketide synthase dehydratase GAY96_09125 PF00550 Phosphopantetheine attachment site GAY96_09125 PF16197 Ketoacyl-synthetase C-terminal extension GAY96_09125 PF00109 Beta-ketoacyl synthase, N-terminal domain GAY96_09125 PF02801 Beta-ketoacyl synthase, C-terminal domain GAY96_09125 PF00698 Acyl transferase domain GAY96_09125 PF08240 Alcohol dehydrogenase GroES-like domain GAY96_09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_09130 PF03466 LysR substrate binding domain GAY96_09135 PF04219 Protein of unknown function, DUF GAY96_09140 PF18030 RimK PreATP-grasp domain GAY96_09140 PF08443 RimK-like ATP-grasp domain GAY96_09145 PF00202 Aminotransferase class-III GAY96_09150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GAY96_09150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GAY96_09155 PF00990 Diguanylate cyclase, GGDEF domain GAY96_09160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GAY96_09160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GAY96_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_09165 PF03466 LysR substrate binding domain GAY96_09170 PF00672 HAMP domain GAY96_09170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09170 PF00512 His Kinase A (phospho-acceptor) domain GAY96_09175 PF00072 Response regulator receiver domain GAY96_09175 PF00486 Transcriptional regulatory protein, C terminal GAY96_09180 PF03477 ATP cone domain GAY96_09180 PF00317 Ribonucleotide reductase, all-alpha domain GAY96_09180 PF02867 Ribonucleotide reductase, barrel domain GAY96_09185 PF00268 Ribonucleotide reductase, small chain GAY96_09190 PF00111 2Fe-2S iron-sulfur cluster binding domain GAY96_09200 PF00578 AhpC/TSA family GAY96_09210 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GAY96_09210 PF12833 Helix-turn-helix domain GAY96_09230 PF01584 CheW-like domain GAY96_09240 PF13614 AAA domain GAY96_09245 PF13677 Membrane MotB of proton-channel complex MotA/MotB GAY96_09245 PF00691 OmpA family GAY96_09250 PF01618 MotA/TolQ/ExbB proton channel family GAY96_09255 PF00072 Response regulator receiver domain GAY96_09255 PF01339 CheB methylesterase GAY96_09260 PF02895 Signal transducing histidine kinase, homodimeric domain GAY96_09260 PF01627 Hpt domain GAY96_09260 PF00072 Response regulator receiver domain GAY96_09260 PF01584 CheW-like domain GAY96_09260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09265 PF04344 Chemotaxis phosphatase, CheZ GAY96_09270 PF00072 Response regulator receiver domain GAY96_09275 PF04545 Sigma-70, region 4 GAY96_09275 PF04542 Sigma-70 region 2 GAY96_09275 PF04539 Sigma-70 region 3 GAY96_09280 PF10609 NUBPL iron-transfer P-loop NTPase GAY96_09285 PF00448 SRP54-type protein, GTPase domain GAY96_09290 PF00771 FHIPEP family GAY96_09295 PF01312 FlhB HrpN YscU SpaS Family GAY96_09300 PF01311 Bacterial export proteins, family 1 GAY96_09305 PF01313 Bacterial export proteins, family 3 GAY96_09310 PF00813 FliP family GAY96_09320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GAY96_09325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GAY96_09325 PF02154 Flagellar motor switch protein FliM GAY96_09350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GAY96_09350 PF18269 T3SS EscN ATPase C-terminal domain GAY96_09360 PF01706 FliG C-terminal domain GAY96_09360 PF14841 FliG middle domain GAY96_09360 PF14842 FliG N-terminal domain GAY96_09365 PF01514 Secretory protein of YscJ/FliF family GAY96_09365 PF08345 Flagellar M-ring protein C-terminal GAY96_09370 PF02049 Flagellar hook-basal body complex protein FliE GAY96_09375 PF02954 Bacterial regulatory protein, Fis family GAY96_09375 PF00072 Response regulator receiver domain GAY96_09375 PF00158 Sigma-54 interaction domain GAY96_09380 PF00512 His Kinase A (phospho-acceptor) domain GAY96_09380 PF13188 PAS domain GAY96_09380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09385 PF02954 Bacterial regulatory protein, Fis family GAY96_09385 PF00158 Sigma-54 interaction domain GAY96_09385 PF06490 Flagellar regulatory protein FleQ GAY96_09390 PF02561 Flagellar protein FliS GAY96_09400 PF03167 Uracil DNA glycosylase superfamily GAY96_09405 PF01336 OB-fold nucleic acid binding domain GAY96_09405 PF00152 tRNA synthetases class II (D, K and N) GAY96_09425 PF02465 Flagellar hook-associated protein 2 N-terminus GAY96_09425 PF07196 Flagellin hook IN motif GAY96_09425 PF07195 Flagellar hook-associated protein 2 C-terminus GAY96_09435 PF00700 Bacterial flagellin C-terminal helical region GAY96_09435 PF00669 Bacterial flagellin N-terminal helical region GAY96_09435 PF00700 Bacterial flagellin C-terminal helical region GAY96_09435 PF00669 Bacterial flagellin N-terminal helical region GAY96_09455 PF00669 Bacterial flagellin N-terminal helical region GAY96_09465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GAY96_09465 PF10135 Rod binding protein GAY96_09475 PF02119 Flagellar P-ring protein GAY96_09480 PF02107 Flagellar L-ring protein GAY96_09485 PF00460 Flagella basal body rod protein GAY96_09485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GAY96_09490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GAY96_09490 PF00460 Flagella basal body rod protein GAY96_09495 PF07559 Flagellar basal body protein FlaE GAY96_09495 PF00460 Flagella basal body rod protein GAY96_09495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GAY96_09500 PF03963 Flagellar hook capping protein - N-terminal region GAY96_09500 PF13860 FlgD Ig-like domain GAY96_09500 PF13861 FlgD Tudor-like domain GAY96_09505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GAY96_09505 PF00460 Flagella basal body rod protein GAY96_09510 PF00460 Flagella basal body rod protein GAY96_09515 PF01739 CheR methyltransferase, SAM binding domain GAY96_09515 PF03705 CheR methyltransferase, all-alpha domain GAY96_09520 PF00072 Response regulator receiver domain GAY96_09520 PF01584 CheW-like domain GAY96_09540 PF07238 PilZ domain GAY96_09540 PF07317 Flagellar regulator YcgR GAY96_09565 PF01906 Putative heavy-metal-binding GAY96_09570 PF01906 Putative heavy-metal-binding GAY96_09575 PF01435 Peptidase family M48 GAY96_09575 PF13181 Tetratricopeptide repeat GAY96_09580 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_09605 PF02562 PhoH-like protein GAY96_09605 PF13638 PIN domain GAY96_09615 PF03641 Possible lysine decarboxylase GAY96_09620 PF00849 RNA pseudouridylate synthase GAY96_09625 PF10411 Disulfide bond isomerase protein N-terminus GAY96_09625 PF13098 Thioredoxin-like domain GAY96_09630 PF01245 Ribosomal protein L19 GAY96_09635 PF01746 tRNA (Guanine-1)-methyltransferase GAY96_09640 PF01782 RimM N-terminal domain GAY96_09640 PF05239 PRC-barrel domain GAY96_09645 PF00886 Ribosomal protein S16 GAY96_09650 PF02690 Na+/Pi-cotransporter GAY96_09655 PF00437 Type II/IV secretion system protein GAY96_09660 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GAY96_09660 PF02769 AIR synthase related protein, C-terminal domain GAY96_09660 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GAY96_09665 PF00497 Bacterial extracellular solute-binding proteins, family 3 GAY96_09665 PF01464 Transglycosylase SLT domain GAY96_09670 PF14437 MafB19-like deaminase GAY96_09680 PF01253 Translation initiation factor SUI1 GAY96_09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09685 PF00512 His Kinase A (phospho-acceptor) domain GAY96_09685 PF00497 Bacterial extracellular solute-binding proteins, family 3 GAY96_09690 PF01037 Lrp/AsnC ligand binding domain GAY96_09695 PF00682 HMGL-like GAY96_09695 PF08502 LeuA allosteric (dimerisation) domain GAY96_09700 PF13361 UvrD-like helicase C-terminal domain GAY96_09700 PF00580 UvrD/REP helicase N-terminal domain GAY96_09710 PF02798 Glutathione S-transferase, N-terminal domain GAY96_09715 PF00270 DEAD/DEAH box helicase GAY96_09715 PF12343 Cold shock protein DEAD box A GAY96_09715 PF00271 Helicase conserved C-terminal domain GAY96_09715 PF03880 DbpA RNA binding domain GAY96_09720 PF00512 His Kinase A (phospho-acceptor) domain GAY96_09720 PF00497 Bacterial extracellular solute-binding proteins, family 3 GAY96_09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09725 PF06865 Pyrimidine/purine nucleoside phosphorylase GAY96_09735 PF12843 Putative quorum-sensing-regulated virulence factor GAY96_09740 PF00958 GMP synthase C terminal domain GAY96_09740 PF02540 NAD synthase GAY96_09740 PF00117 Glutamine amidotransferase class-I GAY96_09760 PF00860 Permease family GAY96_09775 PF04445 Putative SAM-dependent methyltransferase GAY96_09780 PF02673 Bacitracin resistance protein BacA GAY96_09785 PF00814 Glycoprotease family GAY96_09795 PF05191 Adenylate kinase, active site lid GAY96_09800 PF00311 Phosphoenolpyruvate carboxylase GAY96_09805 PF03819 MazG nucleotide pyrophosphohydrolase domain GAY96_09810 PF04607 Region found in RelA / SpoT proteins GAY96_09810 PF02824 TGS domain GAY96_09810 PF13291 ACT domain GAY96_09815 PF01938 TRAM domain GAY96_09815 PF05958 tRNA (Uracil-5-)-methyltransferase GAY96_09820 PF00291 Pyridoxal-phosphate dependent enzyme GAY96_09825 PF00672 HAMP domain GAY96_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_09825 PF00512 His Kinase A (phospho-acceptor) domain GAY96_09825 PF01627 Hpt domain GAY96_09825 PF00072 Response regulator receiver domain GAY96_09825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GAY96_09830 PF01648 4'-phosphopantetheinyl transferase superfamily GAY96_09835 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GAY96_09840 PF02565 Recombination protein O C terminal GAY96_09840 PF11967 Recombination protein O N terminal GAY96_09845 PF01926 50S ribosome-binding GTPase GAY96_09845 PF07650 KH domain GAY96_09850 PF14622 Ribonuclease-III-like GAY96_09850 PF00035 Double-stranded RNA binding motif GAY96_09860 PF06421 GTP-binding protein LepA C-terminus GAY96_09860 PF03144 Elongation factor Tu domain 2 GAY96_09860 PF00009 Elongation factor Tu GTP binding domain GAY96_09860 PF00679 Elongation factor G C-terminus GAY96_09865 PF13180 PDZ domain GAY96_09875 PF03888 MucB/RseB N-terminal domain GAY96_09875 PF17188 MucB/RseB C-terminal domain GAY96_09880 PF03872 Anti sigma-E protein RseA, N-terminal domain GAY96_09880 PF03873 Anti sigma-E protein RseA, C-terminal domain GAY96_09885 PF04542 Sigma-70 region 2 GAY96_09885 PF08281 Sigma-70, region 4 GAY96_09890 PF00890 FAD binding domain GAY96_09890 PF02910 Fumarate reductase flavoprotein C-term GAY96_09900 PF03937 Flavinator of succinate dehydrogenase GAY96_09905 PF01571 Aminomethyltransferase folate-binding domain GAY96_09915 PF00378 Enoyl-CoA hydratase/isomerase GAY96_09925 PF00561 alpha/beta hydrolase fold GAY96_09935 PF00005 ABC transporter GAY96_09935 PF12848 ABC transporter GAY96_09940 PF00027 Cyclic nucleotide-binding domain GAY96_09940 PF13545 Crp-like helix-turn-helix domain GAY96_09945 PF03600 Citrate transporter GAY96_09955 PF09179 TilS substrate binding domain GAY96_09955 PF11734 TilS substrate C-terminal domain GAY96_09955 PF01171 PP-loop family GAY96_09960 PF07733 Bacterial DNA polymerase III alpha NTPase domain GAY96_09960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GAY96_09960 PF14579 Helix-hairpin-helix motif GAY96_09960 PF02811 PHP domain GAY96_09960 PF01336 OB-fold nucleic acid binding domain GAY96_09965 PF18030 RimK PreATP-grasp domain GAY96_09965 PF08443 RimK-like ATP-grasp domain GAY96_09980 PF01026 TatD related DNase GAY96_09985 PF00885 6,7-dimethyl-8-ribityllumazine synthase GAY96_09990 PF00271 Helicase conserved C-terminal domain GAY96_09990 PF00270 DEAD/DEAH box helicase GAY96_10000 PF00497 Bacterial extracellular solute-binding proteins, family 3 GAY96_10000 PF01464 Transglycosylase SLT domain GAY96_10020 PF09905 DNA-binding protein VF530 GAY96_10055 PF00118 TCP-1/cpn60 chaperonin family GAY96_10060 PF00166 Chaperonin 10 Kd subunit GAY96_10075 PF01189 16S rRNA methyltransferase RsmB/F GAY96_10075 PF01029 NusB family GAY96_10080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GAY96_10080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GAY96_10085 PF00664 ABC transporter transmembrane region GAY96_10085 PF00005 ABC transporter GAY96_10090 PF01272 Transcription elongation factor, GreA/GreB, C-term GAY96_10090 PF14760 Rnk N-terminus GAY96_10100 PF01694 Rhomboid family GAY96_10105 PF00378 Enoyl-CoA hydratase/isomerase GAY96_10110 PF00762 Ferrochelatase GAY96_10115 PF07690 Major Facilitator Superfamily GAY96_10120 PF16295 Tetracyclin repressor-like, C-terminal domain GAY96_10120 PF00440 Bacterial regulatory proteins, tetR family GAY96_10135 PF01938 TRAM domain GAY96_10135 PF00919 Uncharacterized protein family UPF0004 GAY96_10135 PF04055 Radical SAM superfamily GAY96_10140 PF02562 PhoH-like protein GAY96_10145 PF02130 Uncharacterized protein family UPF0054 GAY96_10150 PF00571 CBS domain GAY96_10150 PF03471 Transporter associated domain GAY96_10155 PF00795 Carbon-nitrogen hydrolase GAY96_10165 PF00293 NUDIX domain GAY96_10170 PF01960 ArgJ family GAY96_10175 PF07516 SecA Wing and Scaffold domain GAY96_10175 PF01043 SecA preprotein cross-linking domain GAY96_10175 PF02810 SEC-C motif GAY96_10175 PF07517 SecA DEAD-like domain GAY96_10180 PF08525 Opacity-associated protein A N-terminal motif GAY96_10180 PF01551 Peptidase family M23 GAY96_10180 PF01476 LysM domain GAY96_10185 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GAY96_10190 PF12327 FtsZ family, C-terminal domain GAY96_10190 PF00091 Tubulin/FtsZ family, GTPase domain GAY96_10195 PF02491 SHS2 domain inserted in FTSA GAY96_10200 PF03799 Cell division protein FtsQ GAY96_10200 PF08478 POTRA domain, FtsQ-type GAY96_10205 PF07478 D-ala D-ala ligase C-terminus GAY96_10205 PF01820 D-ala D-ala ligase N-terminus GAY96_10210 PF08245 Mur ligase middle domain GAY96_10210 PF02875 Mur ligase family, glutamate ligase domain GAY96_10210 PF01225 Mur ligase family, catalytic domain GAY96_10215 PF03033 Glycosyltransferase family 28 N-terminal domain GAY96_10215 PF04101 Glycosyltransferase family 28 C-terminal domain GAY96_10220 PF01098 Cell cycle protein GAY96_10225 PF02875 Mur ligase family, glutamate ligase domain GAY96_10225 PF08245 Mur ligase middle domain GAY96_10230 PF00953 Glycosyl transferase family 4 GAY96_10230 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GAY96_10235 PF08245 Mur ligase middle domain GAY96_10235 PF01225 Mur ligase family, catalytic domain GAY96_10235 PF02875 Mur ligase family, glutamate ligase domain GAY96_10240 PF01225 Mur ligase family, catalytic domain GAY96_10240 PF02875 Mur ligase family, glutamate ligase domain GAY96_10240 PF08245 Mur ligase middle domain GAY96_10245 PF03717 Penicillin-binding Protein dimerisation domain GAY96_10245 PF00905 Penicillin binding protein transpeptidase domain GAY96_10250 PF04999 Cell division protein FtsL GAY96_10255 PF01795 MraW methylase family GAY96_10260 PF02381 MraZ protein, putative antitoxin-like GAY96_10280 PF00578 AhpC/TSA family GAY96_10280 PF10417 C-terminal domain of 1-Cys peroxiredoxin GAY96_10290 PF00873 AcrB/AcrD/AcrF family GAY96_10295 PF13533 Biotin-lipoyl like GAY96_10300 PF00440 Bacterial regulatory proteins, tetR family GAY96_10305 PF01597 Glycine cleavage H-protein GAY96_10320 PF00689 Cation transporting ATPase, C-terminus GAY96_10320 PF00690 Cation transporter/ATPase, N-terminus GAY96_10325 PF06039 Malate:quinone oxidoreductase (Mqo) GAY96_10330 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit GAY96_10335 PF00364 Biotin-requiring enzyme GAY96_10335 PF00682 HMGL-like GAY96_10335 PF02436 Conserved carboxylase domain GAY96_10340 PF04277 Oxaloacetate decarboxylase, gamma chain GAY96_10345 PF01207 Dihydrouridine synthase (Dus) GAY96_10355 PF02798 Glutathione S-transferase, N-terminal domain GAY96_10360 PF00793 DAHP synthetase I family GAY96_10365 PF08003 Protein of unknown function (DUF1698) GAY96_10370 PF13649 Methyltransferase domain GAY96_10375 PF02646 RmuC family GAY96_10385 PF03186 CobD/Cbib protein GAY96_10385 PF17113 Regulatory signalling modulator protein AmpE GAY96_10390 PF01510 N-acetylmuramoyl-L-alanine amidase GAY96_10395 PF01235 Sodium:alanine symporter family GAY96_10405 PF13657 HipA N-terminal domain GAY96_10405 PF07804 HipA-like C-terminal domain GAY96_10410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GAY96_10410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GAY96_10420 PF07963 Prokaryotic N-terminal methylation motif GAY96_10420 PF00114 Pilin (bacterial filament) GAY96_10430 PF00437 Type II/IV secretion system protein GAY96_10430 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GAY96_10435 PF00482 Type II secretion system (T2SS), protein F GAY96_10440 PF06750 Bacterial Peptidase A24 N-terminal domain GAY96_10440 PF01478 Type IV leader peptidase family GAY96_10445 PF01121 Dephospho-CoA kinase GAY96_10450 PF03884 DNA gyrase inhibitor YacG GAY96_10460 PF00563 EAL domain GAY96_10460 PF00990 Diguanylate cyclase, GGDEF domain GAY96_10460 PF03707 Bacterial signalling protein N terminal repeat GAY96_10470 PF00563 EAL domain GAY96_10470 PF00990 Diguanylate cyclase, GGDEF domain GAY96_10470 PF00072 Response regulator receiver domain GAY96_10475 PF01220 Dehydroquinase class II GAY96_10490 PF01207 Dihydrouridine synthase (Dus) GAY96_10495 PF02954 Bacterial regulatory protein, Fis family GAY96_10500 PF02142 MGS-like domain GAY96_10500 PF01808 AICARFT/IMPCHase bienzyme GAY96_10505 PF02843 Phosphoribosylglycinamide synthetase, C domain GAY96_10505 PF02844 Phosphoribosylglycinamide synthetase, N domain GAY96_10505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GAY96_10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_10510 PF00512 His Kinase A (phospho-acceptor) domain GAY96_10510 PF09308 LuxQ, periplasmic GAY96_10510 PF00072 Response regulator receiver domain GAY96_10515 PF17862 AAA+ lid domain GAY96_10515 PF06480 FtsH Extracellular GAY96_10515 PF01434 Peptidase family M41 GAY96_10515 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_10520 PF03232 Ubiquinone biosynthesis protein COQ7 GAY96_10525 PF00226 DnaJ domain GAY96_10525 PF05099 Tellurite resistance protein TerB GAY96_10530 PF00483 Nucleotidyl transferase GAY96_10535 PF01636 Phosphotransferase enzyme family GAY96_10540 PF03968 OstA-like protein GAY96_10540 PF04453 LPS transport system D GAY96_10545 PF00639 PPIC-type PPIASE domain GAY96_10545 PF09312 SurA N-terminal domain GAY96_10550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GAY96_10555 PF00398 Ribosomal RNA adenine dimethylase GAY96_10560 PF04379 ApaG domain GAY96_10565 PF00149 Calcineurin-like phosphoesterase GAY96_10570 PF00581 Rhodanese-like domain GAY96_10595 PF01966 HD domain GAY96_10595 PF01743 Poly A polymerase head domain GAY96_10595 PF12627 Probable RNA and SrmB- binding site of polymerase A GAY96_10600 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GAY96_10600 PF00809 Pterin binding enzyme GAY96_10605 PF02152 Dihydroneopterin aldolase GAY96_10610 PF00814 Glycoprotease family GAY96_10615 PF01165 Ribosomal protein S21 GAY96_10620 PF09424 Yqey-like protein GAY96_10625 PF10410 DnaB-helicase binding domain of primase GAY96_10625 PF08278 DNA primase DnaG DnaB-binding GAY96_10625 PF13662 Toprim domain GAY96_10625 PF08275 DNA primase catalytic core, N-terminal domain GAY96_10625 PF01807 CHC2 zinc finger GAY96_10630 PF04546 Sigma-70, non-essential region GAY96_10630 PF03979 Sigma-70 factor, region 1.1 GAY96_10630 PF00140 Sigma-70 factor, region 1.2 GAY96_10630 PF04542 Sigma-70 region 2 GAY96_10630 PF04539 Sigma-70 region 3 GAY96_10630 PF04545 Sigma-70, region 4 GAY96_10640 PF00111 2Fe-2S iron-sulfur cluster binding domain GAY96_10640 PF01799 [2Fe-2S] binding domain GAY96_10645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GAY96_10650 PF13478 XdhC Rossmann domain GAY96_10650 PF02625 XdhC and CoxI family GAY96_10660 PF00501 AMP-binding enzyme GAY96_10660 PF13193 AMP-binding enzyme C-terminal domain GAY96_10670 PF00892 EamA-like transporter family GAY96_10675 PF01810 LysE type translocator GAY96_10680 PF00990 Diguanylate cyclase, GGDEF domain GAY96_10680 PF00072 Response regulator receiver domain GAY96_10730 PF02599 Global regulator protein family GAY96_10735 PF01842 ACT domain GAY96_10735 PF13840 ACT domain GAY96_10735 PF00696 Amino acid kinase family GAY96_10740 PF02272 DHHA1 domain GAY96_10740 PF01411 tRNA synthetases class II (A) GAY96_10740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GAY96_10760 PF00561 alpha/beta hydrolase fold GAY96_10765 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_10770 PF02631 RecX family GAY96_10775 PF00154 recA bacterial DNA recombination protein GAY96_10780 PF02464 Competence-damaged protein GAY96_10785 PF01624 MutS domain I GAY96_10785 PF05188 MutS domain II GAY96_10785 PF05192 MutS domain III GAY96_10785 PF05190 MutS family domain IV GAY96_10785 PF00488 MutS domain V GAY96_10790 PF11953 Domain of unknown function (DUF3470) GAY96_10790 PF00037 4Fe-4S binding domain GAY96_10795 PF04539 Sigma-70 region 3 GAY96_10795 PF04545 Sigma-70, region 4 GAY96_10795 PF00140 Sigma-70 factor, region 1.2 GAY96_10795 PF04542 Sigma-70 region 2 GAY96_10800 PF01476 LysM domain GAY96_10800 PF01551 Peptidase family M23 GAY96_10815 PF01975 Survival protein SurE GAY96_10820 PF01142 tRNA pseudouridine synthase D (TruD) GAY96_10825 PF02542 YgbB family GAY96_10830 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GAY96_10835 PF04977 Septum formation initiator GAY96_10840 PF03952 Enolase, N-terminal domain GAY96_10840 PF00113 Enolase, C-terminal TIM barrel domain GAY96_10845 PF06418 CTP synthase N-terminus GAY96_10845 PF00117 Glutamine amidotransferase class-I GAY96_10855 PF01618 MotA/TolQ/ExbB proton channel family GAY96_10860 PF13677 Membrane MotB of proton-channel complex MotA/MotB GAY96_10860 PF00691 OmpA family GAY96_10865 PF00672 HAMP domain GAY96_10865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_10875 PF01784 NIF3 (NGG1p interacting factor 3) GAY96_10880 PF13180 PDZ domain GAY96_10885 PF00155 Aminotransferase class I and II GAY96_10890 PF00815 Histidinol dehydrogenase GAY96_10895 PF01634 ATP phosphoribosyltransferase GAY96_10900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GAY96_10905 PF01722 BolA-like protein GAY96_10915 PF02470 MlaD protein GAY96_10920 PF02405 Permease MlaE GAY96_10925 PF00005 ABC transporter GAY96_10930 PF01699 Sodium/calcium exchanger protein GAY96_10935 PF00571 CBS domain GAY96_10935 PF01380 SIS domain GAY96_10945 PF03968 OstA-like protein GAY96_10950 PF00005 ABC transporter GAY96_10950 PF12399 Branched-chain amino acid ATP-binding cassette transporter GAY96_10955 PF00309 Sigma-54 factor, Activator interacting domain (AID) GAY96_10955 PF04963 Sigma-54 factor, core binding domain GAY96_10955 PF04552 Sigma-54, DNA binding domain GAY96_10960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GAY96_10965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GAY96_10970 PF03668 P-loop ATPase protein family GAY96_10975 PF00381 PTS HPr component phosphorylation site GAY96_10980 PF00571 CBS domain GAY96_10980 PF03448 MgtE intracellular N domain GAY96_10980 PF01769 Divalent cation transporter GAY96_10985 PF04751 Protein of unknown function (DUF615) GAY96_10990 PF00795 Carbon-nitrogen hydrolase GAY96_11000 PF10150 Ribonuclease E/G family GAY96_11000 PF00575 S1 RNA binding domain GAY96_11005 PF02545 Maf-like protein GAY96_11015 PF04085 rod shape-determining protein MreC GAY96_11025 PF02686 Glu-tRNAGln amidotransferase C subunit GAY96_11030 PF01425 Amidase GAY96_11035 PF02934 GatB/GatE catalytic domain GAY96_11035 PF02637 GatB domain GAY96_11045 PF04386 Stringent starvation protein B GAY96_11050 PF00043 Glutathione S-transferase, C-terminal domain GAY96_11050 PF02798 Glutathione S-transferase, N-terminal domain GAY96_11055 PF02167 Cytochrome C1 family GAY96_11060 PF00032 Cytochrome b(C-terminal)/b6/petD GAY96_11060 PF00033 Cytochrome b/b6/petB GAY96_11065 PF00355 Rieske [2Fe-2S] domain GAY96_11065 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GAY96_11070 PF00380 Ribosomal protein S9/S16 GAY96_11075 PF00572 Ribosomal protein L13 GAY96_11085 PF16658 Class II release factor RF3, C-terminal domain GAY96_11085 PF00009 Elongation factor Tu GTP binding domain GAY96_11095 PF00072 Response regulator receiver domain GAY96_11105 PF13673 Acetyltransferase (GNAT) domain GAY96_11105 PF00583 Acetyltransferase (GNAT) family GAY96_11115 PF08502 LeuA allosteric (dimerisation) domain GAY96_11115 PF00682 HMGL-like GAY96_11120 PF11412 Disulphide bond corrector protein DsbC GAY96_11120 PF02683 Cytochrome C biogenesis protein transmembrane region GAY96_11125 PF02424 ApbE family GAY96_11135 PF00750 tRNA synthetases class I (R) GAY96_11135 PF05746 DALR anticodon binding domain GAY96_11135 PF03485 Arginyl tRNA synthetase N terminal domain GAY96_11140 PF02525 Flavodoxin-like fold GAY96_11145 PF12706 Beta-lactamase superfamily domain GAY96_11145 PF17770 Ribonuclease J C-terminal domain GAY96_11145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GAY96_11155 PF03591 AzlC protein GAY96_11160 PF05437 Branched-chain amino acid transport protein (AzlD) GAY96_11170 PF00920 Dehydratase family GAY96_11175 PF00005 ABC transporter GAY96_11180 PF01230 HIT domain GAY96_11200 PF01066 CDP-alcohol phosphatidyltransferase GAY96_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_11205 PF03466 LysR substrate binding domain GAY96_11210 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GAY96_11210 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GAY96_11215 PF12792 CSS motif domain associated with EAL GAY96_11215 PF00563 EAL domain GAY96_11220 PF00155 Aminotransferase class I and II GAY96_11225 PF02657 Fe-S metabolism associated domain GAY96_11230 PF00672 HAMP domain GAY96_11230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_11235 PF12704 MacB-like periplasmic core domain GAY96_11235 PF00005 ABC transporter GAY96_11235 PF02687 FtsX-like permease family GAY96_11240 PF02687 FtsX-like permease family GAY96_11240 PF00005 ABC transporter GAY96_11240 PF12704 MacB-like periplasmic core domain GAY96_11250 PF02321 Outer membrane efflux protein GAY96_11255 PF01116 Fructose-bisphosphate aldolase class-II GAY96_11260 PF00162 Phosphoglycerate kinase GAY96_11265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GAY96_11265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GAY96_11270 PF00296 Luciferase-like monooxygenase GAY96_11280 PF00710 Asparaginase, N-terminal GAY96_11280 PF17763 Glutaminase/Asparaginase C-terminal domain GAY96_11285 PF02696 Uncharacterized ACR, YdiU/UPF0061 family GAY96_11290 PF01050 Mannose-6-phosphate isomerase GAY96_11290 PF00483 Nucleotidyl transferase GAY96_11295 PF00149 Calcineurin-like phosphoesterase GAY96_11300 PF00849 RNA pseudouridylate synthase GAY96_11300 PF01479 S4 domain GAY96_11350 PF00588 SpoU rRNA Methylase family GAY96_11350 PF08032 RNA 2'-O ribose methyltransferase substrate binding GAY96_11360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_11360 PF03466 LysR substrate binding domain GAY96_11370 PF01717 Cobalamin-independent synthase, Catalytic domain GAY96_11370 PF08267 Cobalamin-independent synthase, N-terminal domain GAY96_11375 PF01925 Sulfite exporter TauE/SafE GAY96_11385 PF00106 short chain dehydrogenase GAY96_11395 PF02779 Transketolase, pyrimidine binding domain GAY96_11395 PF02780 Transketolase, C-terminal domain GAY96_11395 PF00456 Transketolase, thiamine diphosphate binding domain GAY96_11400 PF12392 Collagenase GAY96_11400 PF01136 Peptidase family U32 GAY96_11405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GAY96_11415 PF03480 Bacterial extracellular solute-binding protein, family 7 GAY96_11420 PF04237 YjbR GAY96_11425 PF01168 Alanine racemase, N-terminal domain GAY96_11425 PF00842 Alanine racemase, C-terminal domain GAY96_11445 PF13302 Acetyltransferase (GNAT) domain GAY96_11455 PF03796 DnaB-like helicase C terminal domain GAY96_11455 PF00772 DnaB-like helicase N terminal domain GAY96_11460 PF01281 Ribosomal protein L9, N-terminal domain GAY96_11460 PF03948 Ribosomal protein L9, C-terminal domain GAY96_11470 PF01084 Ribosomal protein S18 GAY96_11475 PF01250 Ribosomal protein S6 GAY96_11490 PF02789 Cytosol aminopeptidase family, N-terminal domain GAY96_11490 PF00883 Cytosol aminopeptidase family, catalytic domain GAY96_11495 PF00484 Carbonic anhydrase GAY96_11500 PF02436 Conserved carboxylase domain GAY96_11500 PF00682 HMGL-like GAY96_11500 PF00364 Biotin-requiring enzyme GAY96_11505 PF02785 Biotin carboxylase C-terminal domain GAY96_11505 PF00289 Biotin carboxylase, N-terminal domain GAY96_11505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GAY96_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_11510 PF03466 LysR substrate binding domain GAY96_11515 PF13192 Thioredoxin domain GAY96_11515 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_11520 PF10417 C-terminal domain of 1-Cys peroxiredoxin GAY96_11520 PF00578 AhpC/TSA family GAY96_11525 PF00588 SpoU rRNA Methylase family GAY96_11525 PF08032 RNA 2'-O ribose methyltransferase substrate binding GAY96_11530 PF08206 Ribonuclease B OB domain GAY96_11530 PF00773 RNB domain GAY96_11530 PF17876 Cold shock domain GAY96_11530 PF08461 Ribonuclease R winged-helix domain GAY96_11530 PF00575 S1 RNA binding domain GAY96_11540 PF00672 HAMP domain GAY96_11540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_11540 PF17200 Single Cache domain 2 GAY96_11545 PF00004 ATPase family associated with various cellular activities (AAA) GAY96_11545 PF07724 AAA domain (Cdc48 subfamily) GAY96_11545 PF10431 C-terminal, D2-small domain, of ClpB protein GAY96_11550 PF00227 Proteasome subunit GAY96_11555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GAY96_11575 PF00753 Metallo-beta-lactamase superfamily GAY96_11585 PF01197 Ribosomal protein L31 GAY96_11590 PF00271 Helicase conserved C-terminal domain GAY96_11590 PF17764 3′ DNA-binding domain (3′BD) GAY96_11590 PF18074 Primosomal protein N C-terminal domain GAY96_11590 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GAY96_11590 PF00270 DEAD/DEAH box helicase GAY96_11595 PF04608 Phosphatidylglycerophosphatase A GAY96_11600 PF08362 YcdC-like protein, C-terminal region GAY96_11600 PF00440 Bacterial regulatory proteins, tetR family GAY96_11610 PF01208 Uroporphyrinogen decarboxylase (URO-D) GAY96_11620 PF07992 Pyridine nucleotide-disulphide oxidoreductase GAY96_11620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GAY96_11625 PF00310 Glutamine amidotransferases class-II GAY96_11625 PF04898 Glutamate synthase central domain GAY96_11625 PF01645 Conserved region in glutamate synthase GAY96_11625 PF01493 GXGXG motif GAY96_11635 PF01761 3-dehydroquinate synthase GAY96_11640 PF01202 Shikimate kinase GAY96_11645 PF11741 AMIN domain GAY96_11645 PF03958 Bacterial type II/III secretion system short domain GAY96_11645 PF00263 Bacterial type II and III secretion system protein GAY96_11645 PF07660 Secretin and TonB N terminus short domain GAY96_11650 PF04351 Pilus assembly protein, PilP GAY96_11655 PF04350 Pilus assembly protein, PilO GAY96_11660 PF05137 Fimbrial assembly protein (PilN) GAY96_11665 PF11104 Type IV pilus assembly protein PilM; GAY96_11670 PF00912 Transglycosylase GAY96_11670 PF00905 Penicillin binding protein transpeptidase domain GAY96_11670 PF17092 Penicillin-binding protein OB-like domain GAY96_11680 PF02913 FAD linked oxidases, C-terminal domain GAY96_11680 PF01565 FAD binding domain GAY96_11685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GAY96_11685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GAY96_11690 PF00977 Histidine biosynthesis protein GAY96_11695 PF00977 Histidine biosynthesis protein GAY96_11700 PF00117 Glutamine amidotransferase class-I GAY96_11705 PF00475 Imidazoleglycerol-phosphate dehydratase GAY96_11720 PF00563 EAL domain GAY96_11720 PF00990 Diguanylate cyclase, GGDEF domain GAY96_11720 PF03707 Bacterial signalling protein N terminal repeat GAY96_11725 PF14815 NUDIX domain GAY96_11725 PF10576 Iron-sulfur binding domain of endonuclease III GAY96_11725 PF00730 HhH-GPD superfamily base excision DNA repair protein GAY96_11725 PF00633 Helix-hairpin-helix motif GAY96_11730 PF04362 Bacterial Fe(2+) trafficking GAY96_11765 PF00579 tRNA synthetases class I (W and Y) GAY96_11770 PF04225 Opacity-associated protein A LysM-like domain GAY96_11770 PF01551 Peptidase family M23 GAY96_11775 PF03702 Anhydro-N-acetylmuramic acid kinase GAY96_11780 PF01521 Iron-sulphur cluster biosynthesis GAY96_11795 PF02774 Semialdehyde dehydrogenase, dimerisation domain GAY96_11795 PF01118 Semialdehyde dehydrogenase, NAD binding domain GAY96_11800 PF00654 Voltage gated chloride channel GAY96_11805 PF03653 Uncharacterised protein family (UPF0093) GAY96_11810 PF00202 Aminotransferase class-III GAY96_11820 PF00672 HAMP domain GAY96_11820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_11820 PF17200 Single Cache domain 2 GAY96_11830 PF00912 Transglycosylase GAY96_11830 PF00905 Penicillin binding protein transpeptidase domain GAY96_11830 PF14814 Bifunctional transglycosylase second domain GAY96_11835 PF03553 Na+/H+ antiporter family GAY96_11840 PF08335 GlnD PII-uridylyltransferase GAY96_11840 PF03710 Glutamate-ammonia ligase adenylyltransferase GAY96_11845 PF01063 Amino-transferase class IV GAY96_11855 PF13230 Glutamine amidotransferases class-II GAY96_11875 PF00245 Alkaline phosphatase GAY96_11880 PF01131 DNA topoisomerase GAY96_11880 PF01751 Toprim domain GAY96_11890 PF01381 Helix-turn-helix GAY96_11895 PF08379 Bacterial transglutaminase-like N-terminal region GAY96_11895 PF01841 Transglutaminase-like superfamily GAY96_11905 PF17863 AAA lid domain GAY96_11905 PF07726 ATPase family associated with various cellular activities (AAA) GAY96_11910 PF01022 Bacterial regulatory protein, arsR family GAY96_11915 PF00438 S-adenosylmethionine synthetase, N-terminal domain GAY96_11915 PF02772 S-adenosylmethionine synthetase, central domain GAY96_11915 PF02773 S-adenosylmethionine synthetase, C-terminal domain GAY96_11925 PF05221 S-adenosyl-L-homocysteine hydrolase GAY96_11925 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GAY96_11930 PF02219 Methylenetetrahydrofolate reductase GAY96_11940 PF05686 Glycosyl transferase family 90 GAY96_11945 PF04932 O-Antigen ligase GAY96_11960 PF01339 CheB methylesterase GAY96_11960 PF00072 Response regulator receiver domain GAY96_11965 PF01627 Hpt domain GAY96_11965 PF02895 Signal transducing histidine kinase, homodimeric domain GAY96_11965 PF00072 Response regulator receiver domain GAY96_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_11965 PF01584 CheW-like domain GAY96_11970 PF01739 CheR methyltransferase, SAM binding domain GAY96_11970 PF03705 CheR methyltransferase, all-alpha domain GAY96_11975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GAY96_11975 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GAY96_11980 PF01584 CheW-like domain GAY96_11985 PF00072 Response regulator receiver domain GAY96_11990 PF00072 Response regulator receiver domain GAY96_11995 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GAY96_11995 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GAY96_12005 PF02622 Uncharacterized ACR, COG1678 GAY96_12010 PF03652 Holliday junction resolvase GAY96_12015 PF00156 Phosphoribosyl transferase domain GAY96_12020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GAY96_12020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GAY96_12025 PF01979 Amidohydrolase family GAY96_12030 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) GAY96_12035 PF01467 Cytidylyltransferase-like GAY96_12035 PF00294 pfkB family carbohydrate kinase GAY96_12040 PF03279 Bacterial lipid A biosynthesis acyltransferase GAY96_12050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GAY96_12050 PF00437 Type II/IV secretion system protein GAY96_12060 PF07687 Peptidase dimerisation domain GAY96_12060 PF01546 Peptidase family M20/M25/M40 GAY96_12065 PF00696 Amino acid kinase family GAY96_12065 PF00583 Acetyltransferase (GNAT) family GAY96_12085 PF00186 Dihydrofolate reductase GAY96_12090 PF00303 Thymidylate synthase GAY96_12095 PF01790 Prolipoprotein diacylglyceryl transferase GAY96_12100 PF01925 Sulfite exporter TauE/SafE GAY96_12110 PF03734 L,D-transpeptidase catalytic domain GAY96_12115 PF05951 Bacterial protein of unknown function (DUF882) GAY96_12120 PF01590 GAF domain GAY96_12120 PF05524 PEP-utilising enzyme, N-terminal GAY96_12120 PF00391 PEP-utilising enzyme, mobile domain GAY96_12120 PF02896 PEP-utilising enzyme, TIM barrel domain GAY96_12125 PF00293 NUDIX domain GAY96_12140 PF17785 PUA-like domain GAY96_12140 PF10672 S-adenosylmethionine-dependent methyltransferase GAY96_12150 PF03480 Bacterial extracellular solute-binding protein, family 7 GAY96_12155 PF00580 UvrD/REP helicase N-terminal domain GAY96_12155 PF13361 UvrD-like helicase C-terminal domain GAY96_12160 PF01380 SIS domain GAY96_12160 PF01418 Helix-turn-helix domain, rpiR family GAY96_12175 PF00909 Ammonium Transporter Family GAY96_12180 PF00543 Nitrogen regulatory protein P-II GAY96_12190 PF04380 Membrane fusogenic activity GAY96_12200 PF03707 Bacterial signalling protein N terminal repeat GAY96_12200 PF00563 EAL domain GAY96_12200 PF00990 Diguanylate cyclase, GGDEF domain GAY96_12210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_12210 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_12210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GAY96_12235 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GAY96_12235 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GAY96_12240 PF02321 Outer membrane efflux protein GAY96_12245 PF00293 NUDIX domain GAY96_12255 PF00149 Calcineurin-like phosphoesterase GAY96_12260 PF05728 Uncharacterised protein family (UPF0227) GAY96_12265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_12265 PF00986 DNA gyrase B subunit, carboxyl terminus GAY96_12265 PF00204 DNA gyrase B GAY96_12265 PF01751 Toprim domain GAY96_12270 PF00563 EAL domain GAY96_12270 PF00990 Diguanylate cyclase, GGDEF domain GAY96_12270 PF03707 Bacterial signalling protein N terminal repeat GAY96_12275 PF02678 Pirin GAY96_12275 PF05726 Pirin C-terminal cupin domain GAY96_12280 PF03989 DNA gyrase C-terminal domain, beta-propeller GAY96_12280 PF00521 DNA gyrase/topoisomerase IV, subunit A GAY96_12285 PF17284 Spermidine synthase tetramerisation domain GAY96_12290 PF12633 Adenylate cyclase NT domain GAY96_12290 PF01295 Adenylate cyclase, class-I GAY96_12300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GAY96_12300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GAY96_12305 PF01678 Diaminopimelate epimerase GAY96_12315 PF13419 Haloacid dehalogenase-like hydrolase GAY96_12325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GAY96_12330 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GAY96_12330 PF01464 Transglycosylase SLT domain GAY96_12335 PF00271 Helicase conserved C-terminal domain GAY96_12335 PF00270 DEAD/DEAH box helicase GAY96_12340 PF13617 YnbE-like lipoprotein GAY96_12350 PF04011 LemA family GAY96_12355 PF01435 Peptidase family M48 GAY96_12360 PF04542 Sigma-70 region 2 GAY96_12360 PF04545 Sigma-70, region 4 GAY96_12360 PF00140 Sigma-70 factor, region 1.2 GAY96_12365 PF18075 FtsX extracellular domain GAY96_12370 PF00005 ABC transporter GAY96_12375 PF00448 SRP54-type protein, GTPase domain GAY96_12375 PF02881 SRP54-type protein, helical bundle domain GAY96_12395 PF02909 Tetracyclin repressor-like, C-terminal domain GAY96_12395 PF00440 Bacterial regulatory proteins, tetR family GAY96_12400 PF00171 Aldehyde dehydrogenase family GAY96_12410 PF05199 GMC oxidoreductase GAY96_12410 PF00732 GMC oxidoreductase GAY96_12415 PF01467 Cytidylyltransferase-like GAY96_12420 PF00037 4Fe-4S binding domain GAY96_12430 PF02698 DUF218 domain GAY96_12440 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GAY96_12440 PF06827 Zinc finger found in FPG and IleRS GAY96_12440 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GAY96_12445 PF00471 Ribosomal protein L33 GAY96_12450 PF00830 Ribosomal L28 family GAY96_12455 PF04002 RadC-like JAB domain GAY96_12460 PF02441 Flavoprotein GAY96_12460 PF04127 DNA / pantothenate metabolism flavoprotein GAY96_12465 PF00692 dUTPase GAY96_12470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GAY96_12470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GAY96_12470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GAY96_12470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GAY96_12475 PF00696 Amino acid kinase family GAY96_12480 PF00440 Bacterial regulatory proteins, tetR family GAY96_12490 PF00156 Phosphoribosyl transferase domain GAY96_12500 PF03725 3' exoribonuclease family, domain 2 GAY96_12500 PF01138 3' exoribonuclease family, domain 1 GAY96_12505 PF03755 YicC-like family, N-terminal region GAY96_12505 PF08340 Domain of unknown function (DUF1732) GAY96_12510 PF00625 Guanylate kinase GAY96_12515 PF01192 RNA polymerase Rpb6 GAY96_12520 PF13291 ACT domain GAY96_12520 PF02824 TGS domain GAY96_12520 PF04607 Region found in RelA / SpoT proteins GAY96_12525 PF01042 Endoribonuclease L-PSP GAY96_12535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_12535 PF03466 LysR substrate binding domain GAY96_12540 PF17191 RecG wedge domain GAY96_12540 PF00270 DEAD/DEAH box helicase GAY96_12540 PF00271 Helicase conserved C-terminal domain GAY96_12555 PF01435 Peptidase family M48 GAY96_12560 PF00593 TonB dependent receptor GAY96_12560 PF07715 TonB-dependent Receptor Plug Domain GAY96_12580 PF01636 Phosphotransferase enzyme family GAY96_12590 PF01612 3'-5' exonuclease GAY96_12590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GAY96_12590 PF01367 5'-3' exonuclease, C-terminal SAM fold GAY96_12590 PF00476 DNA polymerase family A GAY96_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GAY96_12600 PF18158 Adaptive response protein AidB N-terminal domain GAY96_12600 PF02770 Acyl-CoA dehydrogenase, middle domain GAY96_12605 PF02080 TrkA-C domain GAY96_12605 PF03600 Citrate transporter GAY96_12615 PF00293 NUDIX domain GAY96_12620 PF13419 Haloacid dehalogenase-like hydrolase GAY96_12625 PF01479 S4 domain GAY96_12630 PF01430 Hsp33 protein GAY96_12640 PF01293 Phosphoenolpyruvate carboxykinase GAY96_12725 PF17674 HHH domain GAY96_12725 PF00575 S1 RNA binding domain GAY96_12725 PF09371 Tex-like protein N-terminal domain GAY96_12725 PF16921 Tex protein YqgF-like domain GAY96_12735 PF04262 Glutamate-cysteine ligase GAY96_12745 PF02600 Disulfide bond formation protein DsbB GAY96_12750 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GAY96_12780 PF12848 ABC transporter GAY96_12780 PF00005 ABC transporter GAY96_12790 PF01595 Cyclin M transmembrane N-terminal domain GAY96_12790 PF03471 Transporter associated domain GAY96_12790 PF00571 CBS domain GAY96_12795 PF00005 ABC transporter GAY96_12795 PF00664 ABC transporter transmembrane region GAY96_12800 PF00005 ABC transporter GAY96_12800 PF00664 ABC transporter transmembrane region GAY96_12840 PF02390 Putative methyltransferase GAY96_12845 PF04241 Protein of unknown function (DUF423) GAY96_12850 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GAY96_12855 PF00175 Oxidoreductase NAD-binding domain GAY96_12860 PF05552 Conserved TM helix GAY96_12860 PF00924 Mechanosensitive ion channel GAY96_12865 PF13458 Periplasmic binding protein GAY96_12880 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase GAY96_12885 PF02602 Uroporphyrinogen-III synthase HemD GAY96_12890 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GAY96_12890 PF03900 Porphobilinogen deaminase, C-terminal domain GAY96_12900 PF00072 Response regulator receiver domain GAY96_12900 PF04397 LytTr DNA-binding domain GAY96_12905 PF06580 Histidine kinase GAY96_12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_12905 PF07694 5TMR of 5TMR-LYT GAY96_12910 PF00206 Lyase GAY96_12910 PF14698 Argininosuccinate lyase C-terminal GAY96_12920 PF00563 EAL domain GAY96_12920 PF00990 Diguanylate cyclase, GGDEF domain GAY96_12920 PF03707 Bacterial signalling protein N terminal repeat GAY96_12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GAY96_12930 PF03466 LysR substrate binding domain GAY96_12935 PF00990 Diguanylate cyclase, GGDEF domain GAY96_12935 PF03707 Bacterial signalling protein N terminal repeat GAY96_12935 PF00563 EAL domain GAY96_12945 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GAY96_12945 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GAY96_12950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GAY96_12950 PF02874 ATP synthase alpha/beta family, beta-barrel domain GAY96_12955 PF00231 ATP synthase GAY96_12960 PF02874 ATP synthase alpha/beta family, beta-barrel domain GAY96_12960 PF00306 ATP synthase alpha/beta chain, C terminal domain GAY96_12960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GAY96_12965 PF00213 ATP synthase delta (OSCP) subunit GAY96_12970 PF00430 ATP synthase B/B' CF(0) GAY96_12975 PF00137 ATP synthase subunit C GAY96_12980 PF00119 ATP synthase A chain GAY96_12990 PF02195 ParB-like nuclease domain GAY96_12990 PF17762 HTH domain found in ParB protein GAY96_12995 PF13614 AAA domain GAY96_13000 PF02527 rRNA small subunit methyltransferase G GAY96_13005 PF06779 Uncharacterised MFS-type transporter YbfB GAY96_13020 PF00486 Transcriptional regulatory protein, C terminal GAY96_13020 PF00072 Response regulator receiver domain GAY96_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAY96_13065 PF00717 Peptidase S24-like GAY96_13075 PF11798 IMS family HHH motif GAY96_13075 PF13438 Domain of unknown function (DUF4113) GAY96_13075 PF00817 impB/mucB/samB family GAY96_13075 PF11799 impB/mucB/samB family C-terminal domain GAY96_13090 PF00589 Phage integrase family GAY96_13110 PF07728 AAA domain (dynein-related subfamily) GAY96_13110 PF12102 Domain of unknown function (DUF3578) GAY96_13125 PF18337 RapA N-terminal Tudor like domain GAY96_13125 PF00176 SNF2 family N-terminal domain GAY96_13125 PF12137 RNA polymerase recycling family C-terminal GAY96_13125 PF00271 Helicase conserved C-terminal domain GAY96_13125 PF18339 RapA N-terminal Tudor like domain 1 GAY96_13130 PF00271 Helicase conserved C-terminal domain GAY96_13130 PF00270 DEAD/DEAH box helicase GAY96_13130 PF09369 Domain of unknown function (DUF1998) GAY96_13140 PF01134 Glucose inhibited division protein A GAY96_13140 PF13932 GidA associated domain GAY96_13165 PF01292 Prokaryotic cytochrome b561 GAY96_13170 PF00990 Diguanylate cyclase, GGDEF domain GAY96_13170 PF00563 EAL domain GAY96_13170 PF03707 Bacterial signalling protein N terminal repeat GAY96_13180 PF01926 50S ribosome-binding GTPase GAY96_13180 PF12631 MnmE helical domain GAY96_13180 PF10396 GTP-binding protein TrmE N-terminus GAY96_13185 PF02096 60Kd inner membrane protein GAY96_13185 PF14849 YidC periplasmic domain GAY96_13190 PF01809 Putative membrane protein insertion efficiency factor GAY96_13195 PF00825 Ribonuclease P GAY96_13200 PF00468 Ribosomal protein L34