locus-tag	class	description
G3M56_000020	COG1215	transferase activity, transferring glycosyl groups
G3M56_000025	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
G3M56_000035	COG0646	methionine synthase
G3M56_000035	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
G3M56_000040	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
G3M56_000060	COG1283	sodium-dependent phosphate transmembrane transporter activity
G3M56_000065	COG1108	ABC-type Mn2 Zn2 transport systems permease components
G3M56_000070	COG1121	(ABC) transporter
G3M56_000080	COG0803	Belongs to the bacterial solute-binding protein 9 family
G3M56_000090	COG4956	integral membrane protein (PIN domain superfamily)
G3M56_000095	COG3328	transposase activity
G3M56_000110	COG0346	lactoylglutathione lyase activity
G3M56_000115	COG1064	alcohol dehydrogenase
G3M56_000120	COG0440	acetolactate synthase activity
G3M56_000125	COG0028	Belongs to the TPP enzyme family
G3M56_000130	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
G3M56_000130	COG1796	DNA polymerase
G3M56_000135	COG2205	protein histidine kinase activity
G3M56_000140	COG0745	RESPONSE REGULATOR receiver
G3M56_000160	COG0563	adenylate kinase activity
G3M56_000175	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
G3M56_000175	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
G3M56_000180	COG1862	Preprotein translocase
G3M56_000185	COG0343	queuine tRNA-ribosyltransferase activity
G3M56_000195	COG0828	Belongs to the bacterial ribosomal protein bS21 family
G3M56_000200	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
G3M56_000220	COG0318	PFAM AMP-dependent synthetase and ligase
G3M56_000220	COG0204	Acyl-transferase
G3M56_000250	COG0525	valine-tRNA ligase activity
G3M56_000265	COG4115	mRNA cleavage
G3M56_000270	COG2161	toxin-antitoxin pair type II binding
G3M56_000275	COG0604	alcohol dehydrogenase
G3M56_000285	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
G3M56_000295	COG0009	L-threonylcarbamoyladenylate synthase
G3M56_000300	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
G3M56_000305	COG0069	glutamate synthase activity
G3M56_000310	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
G3M56_000315	COG2954	triphosphatase activity
G3M56_000325	COG4260	virion core protein, lumpy skin disease virus
G3M56_000330	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
G3M56_000335	COG1331	Highly conserved protein containing a thioredoxin domain
G3M56_000350	COG0110	maltose O-acetyltransferase activity
G3M56_000355	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
G3M56_000380	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
G3M56_000385	COG0442	prolyl-tRNA aminoacylation
G3M56_000400	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
G3M56_000405	COG1385	rRNA (uridine-N3-)-methyltransferase activity
G3M56_000415	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
G3M56_000445	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
G3M56_000480	COG1610	YqeY-like protein
G3M56_000550	COG4555	ABC transporter
G3M56_000560	COG0714	Associated with various cellular activities
G3M56_000575	COG2824	Alkylphosphonate utilization operon protein PhnA
G3M56_000580	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
G3M56_000585	COG0052	Belongs to the universal ribosomal protein uS2 family
G3M56_000590	COG0523	cobalamin synthesis protein
G3M56_000600	COG3040	lipid binding
G3M56_000610	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
G3M56_000615	COG0438	transferase activity, transferring glycosyl groups
G3M56_000625	COG0316	Belongs to the HesB IscA family
G3M56_000640	COG0686	Belongs to the AlaDH PNT family
G3M56_000650	COG1253	flavin adenine dinucleotide binding
G3M56_000670	COG0861	Integral membrane protein TerC family
G3M56_000685	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
G3M56_000690	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
G3M56_000700	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
G3M56_000700	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
G3M56_000725	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
G3M56_000730	COG0488	(ABC) transporter
G3M56_000740	COG1368	sulfuric ester hydrolase activity
G3M56_000745	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
G3M56_000770	COG1940	carbohydrate kinase activity
G3M56_000780	COG0432	Pfam Uncharacterised protein family UPF0047
G3M56_000790	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
G3M56_000795	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
G3M56_000800	COG1187	pseudouridine synthase activity
G3M56_000805	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
G3M56_000810	COG3046	protein related to deoxyribodipyrimidine photolyase
G3M56_000815	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_000820	COG3956	TIGRFAM MazG family protein
G3M56_000830	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
G3M56_000840	COG1388	LysM domain
G3M56_000840	COG5632	N-Acetylmuramoyl-L-alanine amidase
G3M56_000840	COG3409	Peptidoglycan-binding domain 1 protein
G3M56_000850	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
G3M56_000860	COG2860	membrane
G3M56_000865	COG0714	Associated with various cellular activities
G3M56_000900	COG3001	Fructosamine kinase
G3M56_000915	COG0860	N-Acetylmuramoyl-L-alanine amidase
G3M56_000920	COG1388	LysM domain
G3M56_000920	COG3942	CHAP domain
G3M56_000940	COG0339	signal peptide processing
G3M56_000950	COG0820	rRNA (adenine-C2-)-methyltransferase activity
G3M56_000980	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
G3M56_000985	COG0556	nucleotide-excision repair
G3M56_001010	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
G3M56_001020	COG2010	Cytochrome c
G3M56_001035	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
G3M56_001060	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
G3M56_001065	COG2755	lipolytic protein G-D-S-L family
G3M56_001065	COG0657	acetylesterase activity
G3M56_001080	COG1053	succinate dehydrogenase
G3M56_001120	COG0513	Belongs to the DEAD box helicase family
G3M56_001125	COG2759	Belongs to the formate--tetrahydrofolate ligase family
G3M56_001130	COG0133	tryptophan synthase activity
G3M56_001135	COG2261	transglycosylase associated protein
G3M56_001145	COG1242	4 iron, 4 sulfur cluster binding
G3M56_001150	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
G3M56_001160	COG3328	transposase activity
G3M56_001165	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
G3M56_001175	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
G3M56_001190	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
G3M56_001200	COG1132	(ABC) transporter
G3M56_001205	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
G3M56_001215	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
G3M56_001235	COG1882	Formate acetyltransferase
G3M56_001240	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
G3M56_001245	COG2223	nitrite transmembrane transporter activity
G3M56_001255	COG2161	toxin-antitoxin pair type II binding
G3M56_001300	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
G3M56_001325	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_001375	COG0584	glycerophosphoryl diester phosphodiesterase
G3M56_001390	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
G3M56_001395	COG0280	phosphate acetyltransferase
G3M56_001400	COG0571	ribonuclease III activity
G3M56_001415	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
G3M56_001455	COG1028	Short-chain dehydrogenase reductase Sdr
G3M56_001460	COG0471	metal ion transport
G3M56_001475	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
G3M56_001490	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
G3M56_001495	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
G3M56_001495	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
G3M56_001500	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
G3M56_001505	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
G3M56_001515	COG1132	(ABC) transporter
G3M56_001525	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
G3M56_001530	COG0590	tRNA wobble adenosine to inosine editing
G3M56_001595	COG0233	cytoplasmic translational termination
G3M56_001600	COG0528	UMP kinase activity
G3M56_001605	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
G3M56_001620	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_001685	COG3852	Histidine kinase
G3M56_001690	COG1324	tolerance protein
G3M56_001695	COG0545	Peptidyl-prolyl cis-trans isomerase
G3M56_001730	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
G3M56_001740	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
G3M56_001755	COG0071	Belongs to the small heat shock protein (HSP20) family
G3M56_001765	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
G3M56_001790	COG3328	transposase activity
G3M56_001795	COG1214	PFAM Peptidase M22, glycoprotease
G3M56_001800	COG0802	atpase or kinase
G3M56_001805	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
G3M56_001810	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
G3M56_001825	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
G3M56_001835	COG0778	Nitroreductase
G3M56_001860	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
G3M56_001865	COG0508	dehydrogenase complex catalyzes the overall conversion of
G3M56_001865	COG0022	dehydrogenase e1 component
G3M56_001870	COG0508	dehydrogenase complex catalyzes the overall conversion of
G3M56_001875	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
G3M56_001890	COG0513	Belongs to the DEAD box helicase family
G3M56_001905	COG3328	transposase activity
G3M56_001910	COG1088	dTDP-glucose 4,6-dehydratase activity
G3M56_001915	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
G3M56_001920	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
G3M56_001925	COG3328	transposase activity
G3M56_001940	COG1061	Type III restriction enzyme res subunit
G3M56_001955	COG1280	lysine exporter protein (LysE YggA)
G3M56_001965	COG0445	tRNA wobble uridine modification
G3M56_001970	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
G3M56_001975	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
G3M56_001985	COG0180	Tryptophanyl-tRNA synthetase
G3M56_001995	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
G3M56_002010	COG2249	NAD(P)H dehydrogenase (quinone) activity
G3M56_002015	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
G3M56_002015	COG0475	glutathione-regulated potassium exporter activity
G3M56_002040	COG1262	PFAM Formylglycine-generating sulfatase enzyme
G3M56_002040	COG0515	serine threonine protein kinase
G3M56_002055	COG2124	cytochrome p450
G3M56_002060	COG3738	Protein conserved in bacteria
G3M56_002070	COG0037	tRNA processing
G3M56_002075	COG0544	peptidyl-prolyl cis-trans isomerase activity
G3M56_002080	COG0740	serine-type endopeptidase activity
G3M56_002085	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
G3M56_002090	COG0702	epimerase
G3M56_002095	COG0443	Heat shock 70 kDa protein
G3M56_002100	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
G3M56_002105	COG0459	protein refolding
G3M56_002130	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
G3M56_002155	COG1940	carbohydrate kinase activity
G3M56_002170	COG1187	pseudouridine synthase activity
G3M56_002220	COG3977	Valine--pyruvate aminotransferase
G3M56_002240	COG0101	tRNA pseudouridine synthase activity
G3M56_002245	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
G3M56_002280	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
G3M56_002285	COG0113	porphobilinogen synthase activity
G3M56_002295	COG0529	Catalyzes the synthesis of activated sulfate
G3M56_002315	COG0803	Belongs to the bacterial solute-binding protein 9 family
G3M56_002325	COG1121	(ABC) transporter
G3M56_002330	COG1108	ABC-type Mn2 Zn2 transport systems permease components
G3M56_002330	COG1321	iron dependent repressor
G3M56_002335	COG1108	ABC-type Mn2 Zn2 transport systems permease components
G3M56_002340	COG1321	iron dependent repressor
G3M56_002345	COG1490	D-aminoacyl-tRNA deacylase activity
G3M56_002360	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
G3M56_002365	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
G3M56_002365	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
G3M56_002370	COG0564	pseudouridine synthase activity
G3M56_002375	COG0045	succinate-CoA ligase (ADP-forming) activity
G3M56_002380	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
G3M56_002385	COG0372	Belongs to the citrate synthase family
G3M56_002395	COG0859	PFAM glycosyl transferase family 9
G3M56_002400	COG1692	metallophosphoesterase
G3M56_002410	COG0401	homolog of Blt101
G3M56_002430	COG1216	Glycosyl transferase, family 2
G3M56_002430	COG1442	glycosyl transferase family 8
G3M56_002450	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
G3M56_002455	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
G3M56_002495	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
G3M56_002495	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
G3M56_002505	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
G3M56_002515	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
G3M56_002530	COG4221	oxidoreductase activity
G3M56_002535	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
G3M56_002545	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
G3M56_002545	COG0574	Belongs to the PEP-utilizing enzyme family
G3M56_002550	COG3328	transposase activity
G3M56_002560	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
G3M56_002565	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
G3M56_002575	COG1194	a g-specific adenine glycosylase
G3M56_002660	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
G3M56_002665	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
G3M56_002665	COG3153	acetyltransferase
G3M56_002675	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
G3M56_002680	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
G3M56_002685	COG0193	aminoacyl-tRNA hydrolase activity
G3M56_002690	COG0360	Binds together with S18 to 16S ribosomal RNA
G3M56_002695	COG0133	tryptophan synthase activity
G3M56_002700	COG0004	ammonium transporteR
G3M56_002710	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
G3M56_002765	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
G3M56_002780	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
G3M56_002800	COG1305	Transglutaminase-like
G3M56_002820	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
G3M56_002825	COG1966	Carbon starvation protein
G3M56_002865	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
G3M56_002885	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
G3M56_002890	COG0724	RNA recognition motif
G3M56_002910	COG4591	ABC-type transport system involved in lipoprotein release permease component
G3M56_002915	COG0860	N-Acetylmuramoyl-L-alanine amidase
G3M56_002920	COG1722	exodeoxyribonuclease VII activity
G3M56_002925	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
G3M56_002935	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
G3M56_002945	COG0612	Peptidase, M16
G3M56_002950	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
G3M56_002955	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
G3M56_002965	COG1561	YicC-like family, N-terminal region
G3M56_002970	COG3002	Belongs to the UPF0753 family
G3M56_002975	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
G3M56_002990	COG1320	monovalent cation:proton antiporter activity
G3M56_003000	COG1863	multisubunit Na H antiporter MnhE subunit
G3M56_003005	COG0651	ATP synthesis coupled electron transport
G3M56_003010	COG1006	Multisubunit Na H antiporter MnhC subunit
G3M56_003015	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
G3M56_003015	COG2111	Na H antiporter
G3M56_003045	COG0495	leucyl-tRNA aminoacylation
G3M56_003110	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
G3M56_003115	COG0563	adenylate kinase activity
G3M56_003130	COG4591	ABC-type transport system involved in lipoprotein release permease component
G3M56_003135	COG1136	(ABC) transporter
G3M56_003160	COG0134	indole-3-glycerol-phosphate synthase activity
G3M56_003165	COG0788	formyltetrahydrofolate deformylase activity
G3M56_003170	COG0534	Mate efflux family protein
G3M56_003240	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
G3M56_003310	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
G3M56_003320	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
G3M56_003325	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_003340	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
G3M56_003365	COG0640	Transcriptional regulator
G3M56_003370	COG2067	long-chain fatty acid transport protein
G3M56_003385	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
G3M56_003390	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
G3M56_003390	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
G3M56_003400	COG3328	transposase activity
G3M56_003430	COG0616	signal peptide processing
G3M56_003435	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
G3M56_003435	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
G3M56_003440	COG1388	LysM domain
G3M56_003440	COG0860	N-Acetylmuramoyl-L-alanine amidase
G3M56_003450	COG1262	PFAM Formylglycine-generating sulfatase enzyme
G3M56_003460	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
G3M56_003490	COG0589	response to stress
G3M56_003495	COG3034	peptidoglycan biosynthetic process
G3M56_003505	COG0189	ligase activity
G3M56_003505	COG4067	protein conserved in archaea
G3M56_003510	COG3481	metal-dependent phosphohydrolase, HD sub domain
G3M56_003520	COG3328	transposase activity
G3M56_003525	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
G3M56_003545	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
G3M56_003560	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
G3M56_003565	COG0464	growth
G3M56_003570	COG1328	CTP reductase activity
G3M56_003575	COG0602	queuosine metabolic process
G3M56_003585	COG0583	DNA-binding transcription factor activity
G3M56_003595	COG0424	maF-like protein
G3M56_003625	COG1404	Belongs to the peptidase S8 family
G3M56_003650	COG0714	Associated with various cellular activities
G3M56_003675	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
G3M56_003680	COG0726	polysaccharide deacetylase
G3M56_003685	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
G3M56_003690	COG0228	four-way junction DNA binding
G3M56_003710	COG0557	exoribonuclease II activity
G3M56_003725	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
G3M56_003750	COG0297	glycogen (starch) synthase activity
G3M56_003760	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
G3M56_003765	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
G3M56_003770	COG0805	protein transport
G3M56_003790	COG0268	Binds directly to 16S ribosomal RNA
G3M56_003800	COG1215	transferase activity, transferring glycosyl groups
G3M56_003840	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
G3M56_003855	COG3328	transposase activity
G3M56_003860	COG0242	peptide deformylase activity
G3M56_003905	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
G3M56_003910	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
G3M56_003955	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
G3M56_003965	COG1040	competence protein
G3M56_003970	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
G3M56_003975	COG0285	dihydrofolate synthase activity
G3M56_003990	COG1131	(ABC) transporter
G3M56_004015	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
G3M56_004035	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
G3M56_004045	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
G3M56_004050	COG0222	ribosome binding
G3M56_004055	COG0085	RNA polymerase activity
G3M56_004060	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
G3M56_004080	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_004115	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
G3M56_004120	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
G3M56_004180	COG1049	propionate catabolic process, 2-methylcitrate cycle
G3M56_004185	COG0220	tRNA (guanine-N7-)-methyltransferase activity
G3M56_004190	COG0658	competence protein
G3M56_004220	COG0489	protein tyrosine kinase activity
G3M56_004235	COG1254	Belongs to the acylphosphatase family
G3M56_004240	COG0826	peptidase U32
G3M56_004295	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
G3M56_004305	COG3119	arylsulfatase activity
G3M56_004320	COG4585	Histidine kinase
G3M56_004325	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
G3M56_004330	COG0049	tRNA binding
G3M56_004335	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
G3M56_004340	COG0051	transcription antitermination factor activity, RNA binding
G3M56_004345	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
G3M56_004350	COG0088	Forms part of the polypeptide exit tunnel
G3M56_004355	COG0089	rRNA binding
G3M56_004360	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
G3M56_004365	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
G3M56_004375	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
G3M56_004380	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
G3M56_004385	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
G3M56_004395	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
G3M56_004400	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
G3M56_004410	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
G3M56_004415	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
G3M56_004420	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
G3M56_004425	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
G3M56_004430	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
G3M56_004435	COG0200	Binds to the 23S rRNA
G3M56_004455	COG0366	Alpha amylase catalytic
G3M56_004465	COG0456	acetyltransferase
G3M56_004475	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
G3M56_004485	COG0129	dihydroxy-acid dehydratase activity
G3M56_004500	COG2045	Belongs to the ComB family
G3M56_004505	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
G3M56_004515	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
G3M56_004525	COG0471	metal ion transport
G3M56_004530	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
G3M56_004535	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
G3M56_004550	COG3119	arylsulfatase activity
G3M56_004560	COG3119	arylsulfatase activity
G3M56_004575	COG3119	arylsulfatase activity
G3M56_004605	COG3328	transposase activity
G3M56_004615	COG3119	arylsulfatase activity
G3M56_004620	COG4628	conserved protein (DUF2132)
G3M56_004635	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
G3M56_004640	COG0305	Participates in initiation and elongation during chromosome replication
G3M56_004645	COG0359	binds to the 23S rRNA
G3M56_004650	COG0515	serine threonine protein kinase
G3M56_004650	COG2815	serine threonine protein kinase
G3M56_004670	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
G3M56_004680	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
G3M56_004685	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
G3M56_004705	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
G3M56_004725	COG2226	methyltransferase
G3M56_004730	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
G3M56_004740	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
G3M56_004760	COG0628	permease
G3M56_004795	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
G3M56_004800	COG0561	phosphatase activity
G3M56_004830	COG1115	amino acid carrier protein
G3M56_004845	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
G3M56_004850	COG0667	Aldo Keto reductase
G3M56_004865	COG3328	transposase activity
G3M56_004880	COG1902	pentaerythritol trinitrate reductase activity
G3M56_004900	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
G3M56_004905	COG1231	oxidoreductase activity
G3M56_004930	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
G3M56_004940	COG0019	diaminopimelate decarboxylase activity
G3M56_004955	COG0482	sulfurtransferase activity
G3M56_004980	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
G3M56_004995	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
G3M56_004995	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
G3M56_005000	COG0469	pyruvate kinase activity
G3M56_005015	COG0189	ligase activity
G3M56_005015	COG0569	domain protein
G3M56_005025	COG0069	glutamate synthase activity
G3M56_005025	COG0067	glutamate synthase
G3M56_005025	COG0070	glutamate synthase
G3M56_005050	COG0494	nUDIX hydrolase
G3M56_005060	COG0513	Belongs to the DEAD box helicase family
G3M56_005065	COG0726	polysaccharide deacetylase
G3M56_005075	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
G3M56_005080	COG0257	Belongs to the bacterial ribosomal protein bL36 family
G3M56_005085	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
G3M56_005090	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
G3M56_005095	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
G3M56_005100	COG0107	imidazoleglycerol-phosphate synthase activity
G3M56_005105	COG4974	Belongs to the 'phage' integrase family
G3M56_005115	COG2217	Heavy metal translocating P-type atpase
G3M56_005120	COG0004	ammonium transporteR
G3M56_005135	COG1595	DNA-templated transcription, initiation
G3M56_005160	COG4067	protein conserved in archaea
G3M56_005160	COG0189	ligase activity
G3M56_005175	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
G3M56_005190	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
G3M56_005200	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
G3M56_005220	COG3708	Transcriptional regulator
G3M56_005220	COG2207	Transcriptional regulator
G3M56_005225	COG3852	Histidine kinase
G3M56_005230	COG2815	serine threonine protein kinase
G3M56_005230	COG0515	serine threonine protein kinase
G3M56_005235	COG0205	6-phosphofructokinase activity
G3M56_005240	COG0561	phosphatase activity
G3M56_005245	COG0438	transferase activity, transferring glycosyl groups
G3M56_005250	COG1940	carbohydrate kinase activity
G3M56_005260	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
G3M56_005265	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
G3M56_005270	COG0535	radical SAM domain protein
G3M56_005275	COG0535	radical SAM domain protein
G3M56_005280	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
G3M56_005295	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
G3M56_005335	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
G3M56_005345	COG1663	tetraacyldisaccharide 4'-kinase activity
G3M56_005355	COG1741	Belongs to the pirin family
G3M56_005365	COG1162	GTPase activity
G3M56_005385	COG2255	four-way junction helicase activity
G3M56_005390	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
G3M56_005445	COG0708	Exodeoxyribonuclease III
G3M56_005460	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_005465	COG3328	transposase activity
G3M56_005470	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
G3M56_005470	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
G3M56_005475	COG1333	cytochrome c biogenesis protein
G3M56_005475	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
G3M56_005490	COG1760	l-serine dehydratase
G3M56_005505	COG1137	ATPase activity
G3M56_005510	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
G3M56_005530	COG1381	Involved in DNA repair and RecF pathway recombination
G3M56_005535	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
G3M56_005540	COG0336	Belongs to the RNA methyltransferase TrmD family
G3M56_005560	COG1012	belongs to the aldehyde dehydrogenase family
G3M56_005570	COG0463	Glycosyl transferase, family 2
G3M56_005580	COG2255	four-way junction helicase activity
G3M56_005605	COG0415	Belongs to the DNA photolyase family
G3M56_005630	COG0564	pseudouridine synthase activity
G3M56_005640	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
G3M56_005645	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
G3M56_005655	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
G3M56_005660	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
G3M56_005665	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
G3M56_005675	COG1181	Belongs to the D-alanine--D-alanine ligase family
G3M56_005680	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
G3M56_005690	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
G3M56_005735	COG2010	Cytochrome c
G3M56_005785	COG0724	RNA recognition motif
G3M56_005805	COG0205	6-phosphofructokinase activity
G3M56_005810	COG0516	GMP reductase activity
G3M56_005810	COG0517	IMP dehydrogenase activity
G3M56_005815	COG0519	Catalyzes the synthesis of GMP from XMP
G3M56_005815	COG0518	GMP synthase (glutamine-hydrolyzing) activity
G3M56_005825	COG0515	serine threonine protein kinase
G3M56_005825	COG1262	PFAM Formylglycine-generating sulfatase enzyme
G3M56_005835	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
G3M56_005845	COG1575	Belongs to the MenA family. Type 1 subfamily
G3M56_005860	COG1840	ABC-type Fe3 transport system, periplasmic component
G3M56_005865	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
G3M56_005870	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
G3M56_005880	COG0318	PFAM AMP-dependent synthetase and ligase
G3M56_005885	COG0335	large ribosomal subunit rRNA binding
G3M56_005890	COG0427	acetyl-CoA hydrolase
G3M56_005905	COG0542	response to heat
G3M56_005910	COG0217	transcriptional regulatory protein
G3M56_005920	COG0489	protein tyrosine kinase activity
G3M56_005930	COG0826	peptidase U32
G3M56_005965	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_005975	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
G3M56_005980	COG0617	tRNA 3'-terminal CCA addition
G3M56_006040	COG1160	GTP binding
G3M56_006055	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
G3M56_006060	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
G3M56_006065	COG0668	transmembrane transport
G3M56_006075	COG0778	Nitroreductase
G3M56_006080	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
G3M56_006090	COG0494	nUDIX hydrolase
G3M56_006095	COG0215	cysteine-tRNA ligase activity
G3M56_006100	COG3314	Sporulation integral membrane protein YlbJ
G3M56_006105	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
G3M56_006115	COG2315	Protein conserved in bacteria
G3M56_006145	COG0537	adenosine 5'-monophosphoramidase activity
G3M56_006155	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
G3M56_006165	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
G3M56_006165	COG0551	DNA topoisomerase type I activity
G3M56_006170	COG0758	DNA mediated transformation
G3M56_006185	COG0742	ribosomal rna small subunit methyltransferase
G3M56_006195	COG1309	transcriptional regulator
G3M56_006200	COG1538	Outer membrane efflux protein
G3M56_006225	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
G3M56_006245	COG0640	Transcriptional regulator
G3M56_006265	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
G3M56_006265	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
G3M56_006275	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
G3M56_006280	COG2003	Belongs to the UPF0758 family
G3M56_006285	COG1131	(ABC) transporter
G3M56_006285	COG1716	ATPase activity
G3M56_006285	COG0842	Transport permease protein
G3M56_006290	COG0142	geranyltranstransferase activity
G3M56_006295	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
G3M56_006305	COG4535	Mg2 and Co2 transporter CorC
G3M56_006310	COG0418	dihydroorotase activity
G3M56_006320	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
G3M56_006325	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
G3M56_006330	COG0175	sulfate reduction
G3M56_006335	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
G3M56_006350	COG3119	arylsulfatase activity
G3M56_006355	COG0346	lactoylglutathione lyase activity
G3M56_006375	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_006380	COG3273	potassium ion transport
G3M56_006380	COG0471	metal ion transport
G3M56_006385	COG3273	potassium ion transport
G3M56_006385	COG0471	metal ion transport
G3M56_006390	COG2346	COG2346, Truncated hemoglobins
G3M56_006425	COG0358	DNA primase activity
G3M56_006435	COG3386	PFAM SMP-30 Gluconolaconase
G3M56_006440	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
G3M56_006450	COG0811	peptide transport
G3M56_006470	COG2322	membrane
G3M56_006525	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
G3M56_006530	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
G3M56_006535	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
G3M56_006575	COG3698	Phosphodiester glycosidase
G3M56_006580	COG1509	lysine 2,3-aminomutase activity
G3M56_006590	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
G3M56_006595	COG3328	transposase activity
G3M56_006630	COG2226	methyltransferase
G3M56_006635	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
G3M56_006640	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
G3M56_006645	COG1028	Short-chain dehydrogenase reductase Sdr
G3M56_006655	COG3361	conserved protein (COG2071)
G3M56_006660	COG2957	Belongs to the agmatine deiminase family
G3M56_006675	COG3119	arylsulfatase activity
G3M56_006690	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
G3M56_006695	COG3228	Belongs to the MtfA family
G3M56_006710	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
G3M56_006715	COG0581	inorganic phosphate transmembrane transporter activity
G3M56_006720	COG0573	inorganic phosphate transmembrane transporter activity
G3M56_006730	COG0704	Plays a role in the regulation of phosphate uptake
G3M56_006755	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
G3M56_006765	COG0602	queuosine metabolic process
G3M56_006800	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
G3M56_006810	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
G3M56_006815	COG0179	Fumarylacetoacetate (FAA) hydrolase
G3M56_006820	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
G3M56_006830	COG0632	four-way junction helicase activity
G3M56_006850	COG0227	Belongs to the bacterial ribosomal protein bL28 family
G3M56_006855	COG2321	neutral zinc metallopeptidase
G3M56_006860	COG0288	reversible hydration of carbon dioxide
G3M56_006865	COG0307	riboflavin synthase, alpha
G3M56_006885	COG0423	glycine-tRNA ligase activity
G3M56_006890	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
G3M56_006895	COG0084	hydrolase, TatD family'
G3M56_006905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
G3M56_006910	COG0416	fatty acid biosynthetic process
G3M56_006920	COG0138	bifunctional purine biosynthesis protein purh
G3M56_006945	COG0811	peptide transport
G3M56_006965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
G3M56_006970	COG1295	ribonuclease BN
G3M56_006970	COG1959	2 iron, 2 sulfur cluster binding
G3M56_006980	COG0333	Belongs to the bacterial ribosomal protein bL32 family
G3M56_006990	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
G3M56_006995	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
G3M56_007010	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
G3M56_007015	COG1185	polyribonucleotide nucleotidyltransferase activity
G3M56_007025	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
G3M56_007025	COG2755	lipolytic protein G-D-S-L family
G3M56_007030	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
G3M56_007030	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
G3M56_007035	COG1609	Transcriptional regulator
G3M56_007045	COG0811	peptide transport
G3M56_007055	COG0848	biopolymer transport protein
G3M56_007080	COG1166	arginine decarboxylase activity
G3M56_007160	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
G3M56_007165	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
G3M56_007170	COG1643	Atp-dependent helicase
G3M56_007175	COG1215	transferase activity, transferring glycosyl groups
G3M56_007180	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
G3M56_007185	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
G3M56_007190	COG0012	GTP binding
G3M56_007205	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
G3M56_007210	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
G3M56_007225	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
G3M56_007470	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
G3M56_007480	COG1077	Cell shape determining protein MreB Mrl
G3M56_007500	COG1530	ribonuclease E activity
G3M56_007535	COG2378	regulation of single-species biofilm formation
G3M56_007555	COG2885	chlorophyll binding
G3M56_007595	COG1522	sequence-specific DNA binding
G3M56_007600	COG0436	Aminotransferase
G3M56_007610	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
G3M56_007610	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
G3M56_007620	COG0203	ribosomal protein L17
G3M56_007625	COG0202	RNA polymerase activity
G3M56_007635	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
G3M56_007640	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
G3M56_007650	COG1595	DNA-templated transcription, initiation
G3M56_007665	COG2095	MarC family integral membrane protein
G3M56_007680	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
G3M56_007690	COG1090	epimerase
G3M56_007705	COG0635	Involved in the biosynthesis of porphyrin-containing compound
G3M56_007725	COG0668	transmembrane transport
G3M56_007760	COG0714	Associated with various cellular activities
G3M56_007785	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
G3M56_007790	COG0772	Belongs to the SEDS family
G3M56_007795	COG2022	thiamine diphosphate biosynthetic process
G3M56_007820	COG0552	protein localization to endoplasmic reticulum
G3M56_007825	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
G3M56_007840	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
G3M56_007860	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
G3M56_007865	COG0512	Glutamine amidotransferase of anthranilate synthase
G3M56_007870	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
G3M56_007880	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
G3M56_007885	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
G3M56_007885	COG1747	RNA polymerase binding
G3M56_007890	COG0148	phosphopyruvate hydratase activity
G3M56_007940	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
G3M56_007945	COG0792	nuclease activity
G3M56_007955	COG2239	Acts as a magnesium transporter
G3M56_007990	COG1482	cell wall glycoprotein biosynthetic process
G3M56_008010	COG1074	ATP-dependent DNA helicase activity
G3M56_008050	COG1475	DNA binding
G3M56_008075	COG4555	ABC transporter
G3M56_008080	COG1668	transmembrane transport
G3M56_008090	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
G3M56_008100	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
G3M56_008105	COG0736	holo-[acyl-carrier-protein] synthase activity
G3M56_008115	COG3639	organic phosphonate transmembrane transporter activity
G3M56_008125	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
G3M56_008125	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
G3M56_008130	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
G3M56_008185	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
G3M56_008190	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
G3M56_008200	COG0356	it plays a direct role in the translocation of protons across the membrane
G3M56_008205	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
G3M56_008210	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
G3M56_008215	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
G3M56_008220	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
G3M56_008225	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
G3M56_008230	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
G3M56_008235	COG0355	proton-transporting ATP synthase activity, rotational mechanism
G3M56_008240	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
G3M56_008245	COG0159	tryptophan synthase activity
G3M56_008255	COG1674	ftsk spoiiie
G3M56_008275	COG0137	argininosuccinate synthase activity
G3M56_008285	COG2204	response regulator
G3M56_008290	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
G3M56_008310	COG1716	ATPase activity
G3M56_008310	COG1131	(ABC) transporter
G3M56_008310	COG0842	Transport permease protein
G3M56_008335	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
G3M56_008355	COG1538	Outer membrane efflux protein
G3M56_008365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
G3M56_008375	COG0277	FAD linked oxidase domain protein
G3M56_008380	COG0714	Associated with various cellular activities
G3M56_008395	COG0039	L-malate dehydrogenase activity
G3M56_008400	COG3328	transposase activity
G3M56_008405	COG3119	arylsulfatase activity
G3M56_008415	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
G3M56_008425	COG0151	Belongs to the GarS family
G3M56_008435	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
G3M56_008445	COG1605	Chorismate mutase
G3M56_008445	COG0077	Prephenate dehydratase
G3M56_008450	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
G3M56_008455	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
G3M56_008465	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
G3M56_008470	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
G3M56_008480	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
G3M56_008515	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
G3M56_008525	COG0321	lipoyl(octanoyl) transferase activity
G3M56_008540	COG4864	UPF0365 protein
G3M56_008545	COG0811	peptide transport
G3M56_008590	COG1450	Type ii and iii secretion system protein
G3M56_008605	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
G3M56_008610	COG0297	glycogen (starch) synthase activity
G3M56_008615	COG0612	Peptidase, M16
G3M56_008630	COG1196	nuclear chromosome segregation
G3M56_008635	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
G3M56_008640	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
G3M56_008650	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
G3M56_008655	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
G3M56_008680	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
G3M56_008685	COG0626	cystathionine gamma-synthase activity
G3M56_008695	COG0583	DNA-binding transcription factor activity
G3M56_008700	COG2855	membrane
G3M56_008715	COG0714	Associated with various cellular activities
G3M56_008770	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
G3M56_008775	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
G3M56_008780	COG1459	type II secretion system
G3M56_008805	COG0131	Imidazoleglycerol-phosphate dehydratase
G3M56_008810	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
G3M56_008815	COG1837	Belongs to the UPF0109 family
G3M56_008825	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
G3M56_008835	COG0668	transmembrane transport
G3M56_008845	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
G3M56_008855	COG0254	rRNA binding
G3M56_008860	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
G3M56_008865	COG2890	protein-(glutamine-N5) methyltransferase activity
G3M56_008870	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
G3M56_008900	COG0326	Molecular chaperone. Has ATPase activity
G3M56_008915	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
G3M56_008920	COG1131	(ABC) transporter
G3M56_008920	COG1716	ATPase activity
G3M56_008920	COG0842	Transport permease protein
G3M56_008940	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
G3M56_008945	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_008950	COG2062	phosphohistidine phosphatase, SixA
G3M56_008960	COG2363	Small membrane protein
G3M56_008965	COG0473	3-isopropylmalate dehydrogenase activity
G3M56_008970	COG0135	phosphoribosylanthranilate isomerase activity
G3M56_008975	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
G3M56_008985	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
G3M56_008990	COG0688	phosphatidylethanolamine metabolic process
G3M56_009035	COG0300	oxidoreductase activity
G3M56_009045	COG0768	penicillin binding
G3M56_009050	COG1283	sodium-dependent phosphate transmembrane transporter activity
G3M56_009060	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
G3M56_009065	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
G3M56_009075	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
G3M56_009080	COG0022	dehydrogenase e1 component
G3M56_009080	COG0508	dehydrogenase complex catalyzes the overall conversion of
G3M56_009085	COG0508	dehydrogenase complex catalyzes the overall conversion of
G3M56_009405	COG0488	(ABC) transporter
G3M56_009415	COG1793	dna ligase
G3M56_009425	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
G3M56_009435	COG2949	membrane
G3M56_009450	COG0446	pyridine nucleotide-disulphide oxidoreductase
G3M56_009455	COG0589	response to stress
G3M56_009460	COG0659	secondary active sulfate transmembrane transporter activity
G3M56_009485	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
G3M56_009490	COG0047	phosphoribosylformylglycinamidine synthase activity
G3M56_009495	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
G3M56_009505	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
G3M56_009510	COG2985	domain, Protein
G3M56_009510	COG0490	domain, Protein
G3M56_009515	COG1271	oxidase subunit
G3M56_009520	COG1294	oxidase, subunit
G3M56_009525	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
G3M56_009530	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
G3M56_009555	COG0481	GTPase activity
G3M56_009595	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
G3M56_009600	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
G3M56_009615	COG1024	Enoyl-CoA hydratase
G3M56_009615	COG1250	3-hydroxyacyl-CoA dehydrogenase
G3M56_009620	COG0183	Belongs to the thiolase family
G3M56_009625	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
G3M56_009630	COG1752	Esterase of the alpha-beta hydrolase superfamily
G3M56_009635	COG2121	Domain of unknown function (DUF374)
G3M56_009645	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
G3M56_009650	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
G3M56_009670	COG1730	sister chromatid segregation
G3M56_009685	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
G3M56_009690	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
G3M56_009700	COG1595	DNA-templated transcription, initiation
G3M56_009705	COG4112	unkown
G3M56_009720	COG0174	glutamine synthetase
G3M56_009730	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
G3M56_009735	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
G3M56_009740	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
G3M56_009745	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
G3M56_009750	COG0195	Participates in both transcription termination and antitermination
G3M56_009760	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
G3M56_009770	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
G3M56_009775	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
G3M56_009790	COG0450	alkyl hydroperoxide reductase
G3M56_009810	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
G3M56_009810	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
G3M56_009815	COG0438	transferase activity, transferring glycosyl groups
G3M56_009820	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
G3M56_009830	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
G3M56_009845	COG0706	membrane insertase activity
G3M56_009850	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
G3M56_009855	COG0594	ribonuclease P activity
G3M56_009860	COG0230	Belongs to the bacterial ribosomal protein bL34 family
G3M56_009870	COG1030	water channel activity
G3M56_009890	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
G3M56_009895	COG2818	Glycosylase
G3M56_009910	COG0825	malonyl-CoA metabolic process
G3M56_009935	COG1649	PFAM Uncharacterised BCR, COG1649
G3M56_009945	COG1522	sequence-specific DNA binding
G3M56_009955	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
G3M56_009960	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
G3M56_009980	COG1595	DNA-templated transcription, initiation
G3M56_009990	COG0515	serine threonine protein kinase
G3M56_009990	COG2815	serine threonine protein kinase
G3M56_010120	COG0456	acetyltransferase
G3M56_010145	COG0823	Involved in the tonB-independent uptake of proteins
G3M56_010155	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
G3M56_010160	COG1678	Uncharacterized ACR, COG1678
G3M56_010165	COG1063	alcohol dehydrogenase
G3M56_010175	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
G3M56_010180	COG2967	ApaG domain
G3M56_010185	COG0351	phosphomethylpyrimidine kinase
G3M56_010200	COG0649	NAD binding
G3M56_010220	COG1034	ATP synthesis coupled electron transport
G3M56_010225	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
G3M56_010230	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
G3M56_010245	COG0713	ATP synthesis coupled electron transport
G3M56_010250	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
G3M56_010255	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
G3M56_010260	COG1007	ATP synthesis coupled electron transport
G3M56_010270	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
G3M56_010275	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
G3M56_010285	COG5434	Belongs to the glycosyl hydrolase 28 family
G3M56_010295	COG3250	beta-galactosidase activity
G3M56_010300	COG1363	Peptidase, m42
G3M56_010315	COG0719	Fe-S assembly protein
G3M56_010320	COG0396	ATPase activity
G3M56_010325	COG0735	belongs to the Fur family
G3M56_010340	COG1472	Belongs to the glycosyl hydrolase 3 family
G3M56_010355	COG0628	permease
G3M56_010390	COG1058	Belongs to the CinA family
G3M56_010390	COG1546	Belongs to the CinA family
G3M56_010395	COG0799	negative regulation of ribosome biogenesis
G3M56_010415	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
G3M56_010440	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
G3M56_010440	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
G3M56_010465	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
G3M56_010470	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
G3M56_010495	COG0438	transferase activity, transferring glycosyl groups
G3M56_010495	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
G3M56_010500	COG1216	Glycosyl transferase, family 2
G3M56_010520	COG2244	polysaccharide biosynthetic process
G3M56_010525	COG3206	protein involved in exopolysaccharide biosynthesis
G3M56_010525	COG0489	protein tyrosine kinase activity
G3M56_010550	COG0322	excinuclease ABC activity
G3M56_010555	COG0811	peptide transport
G3M56_010560	COG0848	biopolymer transport protein
G3M56_010580	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
G3M56_010585	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
G3M56_010590	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
G3M56_010605	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
G3M56_010615	COG0181	hydroxymethylbilane synthase activity
G3M56_010620	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
G3M56_010630	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
G3M56_010640	COG0509	glycine decarboxylation via glycine cleavage system
G3M56_010645	COG0404	The glycine cleavage system catalyzes the degradation of glycine
G3M56_010655	COG0730	response to heat
G3M56_010660	COG0527	aspartate kinase activity
G3M56_010665	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
G3M56_010680	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
G3M56_010685	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
G3M56_010685	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
G3M56_010690	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
G3M56_010715	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
G3M56_010720	COG0284	orotidine-5'-phosphate decarboxylase activity
G3M56_010725	COG1702	phosphate starvation-inducible protein PhoH
G3M56_010740	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
G3M56_010745	COG0149	triose-phosphate isomerase activity
G3M56_010750	COG0126	phosphoglycerate kinase activity
G3M56_010760	COG1028	Short-chain dehydrogenase reductase Sdr
G3M56_010765	COG0584	glycerophosphoryl diester phosphodiesterase
G3M56_010775	COG0438	transferase activity, transferring glycosyl groups
G3M56_010785	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
G3M56_010800	COG0508	dehydrogenase complex catalyzes the overall conversion of
G3M56_010805	COG0567	Dehydrogenase, E1 component
G3M56_010810	COG1131	(ABC) transporter
G3M56_010830	COG0006	proline dipeptidase activity
G3M56_010840	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
G3M56_010845	COG0505	Belongs to the CarA family
G3M56_010900	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
G3M56_010935	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
G3M56_010935	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
G3M56_010935	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
G3M56_010940	COG0018	arginyl-trna synthetase
G3M56_010960	COG0191	fructose-bisphosphate aldolase activity
G3M56_010985	COG1968	undecaprenyl-diphosphatase activity
G3M56_011000	COG3842	ATPase activity
G3M56_011020	COG1183	phosphatidylcholine synthase activity
G3M56_011080	COG2732	(Barnase) inhibitor
G3M56_011130	COG1187	pseudouridine synthase activity
G3M56_011135	COG2208	phosphoserine phosphatase activity
G3M56_011155	COG0494	nUDIX hydrolase
G3M56_011175	COG4772	TonB-dependent receptor
G3M56_011180	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
G3M56_011185	COG1643	Atp-dependent helicase
G3M56_011210	COG4651	solute:proton antiporter activity
G3M56_011210	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
G3M56_011215	COG2918	glutathione biosynthetic process
G3M56_011215	COG0189	ligase activity
G3M56_011220	COG0700	Nucleoside recognition
G3M56_011240	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
G3M56_011255	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
G3M56_011260	COG1192	Involved in chromosome partitioning
G3M56_011265	COG0653	protein targeting
G3M56_011290	COG0259	pyridoxamine-phosphate oxidase activity
G3M56_011300	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
G3M56_011305	COG1595	DNA-templated transcription, initiation
G3M56_011340	COG1404	Belongs to the peptidase S8 family
G3M56_011340	COG4935	Belongs to the peptidase S8 family
G3M56_011345	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
G3M56_011350	COG1012	belongs to the aldehyde dehydrogenase family
G3M56_011355	COG3328	transposase activity
G3M56_011375	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
G3M56_011380	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
G3M56_011430	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
G3M56_011455	COG3250	beta-galactosidase activity
G3M56_011470	COG0577	efflux transmembrane transporter activity
G3M56_011470	COG1136	(ABC) transporter
G3M56_011475	COG1136	(ABC) transporter
G3M56_011480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
G3M56_011490	COG1597	lipid kinase activity
G3M56_011505	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
G3M56_011520	COG4953	penicillin-binding protein 1C
G3M56_011525	COG2373	Large extracellular alpha-helical protein
G3M56_011550	COG0463	Glycosyl transferase, family 2
G3M56_011555	COG2204	response regulator
G3M56_011560	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
G3M56_011565	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
G3M56_011570	COG0237	dephospho-CoA kinase activity
G3M56_011605	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
G3M56_011610	COG1127	ABC transporter
G3M56_011615	COG3008	intermembrane lipid transfer
G3M56_011615	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
G3M56_011625	COG1199	ATP-dependent helicase activity
G3M56_011650	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
G3M56_011655	COG0673	inositol 2-dehydrogenase activity
G3M56_011665	COG3119	arylsulfatase activity
G3M56_011680	COG1686	Belongs to the peptidase S11 family
G3M56_011685	COG0156	8-amino-7-oxononanoate synthase activity
G3M56_011720	COG2274	protein secretion by the type I secretion system
G3M56_011730	COG1959	2 iron, 2 sulfur cluster binding
G3M56_011735	COG1045	serine acetyltransferase
G3M56_011755	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
G3M56_011755	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
G3M56_011765	COG0579	oxidoreductase
G3M56_011780	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
G3M56_011785	COG1335	isochorismatase
G3M56_011820	COG0039	L-malate dehydrogenase activity
G3M56_011825	COG0235	Class ii aldolase
G3M56_011845	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
G3M56_011855	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
G3M56_011865	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
G3M56_011870	COG4869	propanediol catabolic process
G3M56_011875	COG1349	DNA-binding transcription factor activity
G3M56_011880	COG1070	Carbohydrate kinase
G3M56_011890	COG2188	Transcriptional regulator
G3M56_012165	COG1845	cytochrome c oxidase, subunit III
G3M56_012175	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
G3M56_012225	COG0437	4 iron, 4 sulfur cluster binding
G3M56_012235	COG3119	arylsulfatase activity
G3M56_012260	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
G3M56_012265	COG0540	Belongs to the ATCase OTCase family
G3M56_012270	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
G3M56_012275	COG0095	Lipoate-protein ligase
G3M56_012290	COG1496	oxidoreductase activity
G3M56_012310	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
G3M56_012325	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
G3M56_012385	COG1469	GTP cyclohydrolase I activity
G3M56_012390	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
G3M56_012395	COG0267	Belongs to the bacterial ribosomal protein bL33 family
G3M56_012400	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
G3M56_012405	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
G3M56_012420	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
G3M56_012425	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
G3M56_012430	COG1215	transferase activity, transferring glycosyl groups
G3M56_012455	COG0436	Aminotransferase
G3M56_012475	COG2252	PERMEase
G3M56_012485	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
G3M56_012500	COG1388	LysM domain
G3M56_012500	COG1705	Flagellar rod assembly protein muramidase FlgJ
G3M56_012505	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
G3M56_012510	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
G3M56_012510	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
G3M56_012520	COG2081	HI0933 family
G3M56_012525	COG4651	solute:proton antiporter activity
G3M56_012525	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
G3M56_012530	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
G3M56_012545	COG3942	CHAP domain
G3M56_012545	COG1388	LysM domain
G3M56_012555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
G3M56_012560	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
G3M56_012580	COG0275	rRNA processing
G3M56_012585	COG2001	Belongs to the MraZ family
G3M56_012590	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
G3M56_012605	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
G3M56_012610	COG0504	CTP synthase activity
G3M56_012615	COG0612	Peptidase, M16
G3M56_012670	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
G3M56_012675	COG0363	glucosamine-6-phosphate deaminase activity
G3M56_012690	COG0546	phosphoglycolate phosphatase activity
G3M56_012700	COG2176	DNA-directed DNA polymerase activity
G3M56_012710	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
G3M56_012715	COG0142	geranyltranstransferase activity
G3M56_012730	COG0738	Major facilitator superfamily
G3M56_012740	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
G3M56_012780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
G3M56_012790	COG0196	riboflavin kinase activity
G3M56_012795	COG4608	Belongs to the ABC transporter superfamily
G3M56_012800	COG0444	Belongs to the ABC transporter superfamily
G3M56_012810	COG4239	(ABC) transporter, permease
G3M56_012845	COG4166	transmembrane transport
G3M56_012850	COG0601	transmembrane transport
G3M56_012855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
G3M56_012860	COG0444	Belongs to the ABC transporter superfamily
G3M56_012885	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
G3M56_012890	COG0701	Predicted permease
G3M56_012900	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
G3M56_012920	COG3119	arylsulfatase activity
G3M56_012930	COG1757	Na H antiporter
G3M56_012940	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
G3M56_012945	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
G3M56_012950	COG3525	Glycosyl hydrolase, family 20, catalytic domain
G3M56_012970	COG1217	gtp-binding protein TYPA
G3M56_012985	COG0109	protoheme IX farnesyltransferase activity
G3M56_013005	COG0291	Belongs to the bacterial ribosomal protein bL35 family
G3M56_013010	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
G3M56_013015	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
G3M56_013020	COG0072	phenylalanine-tRNA ligase activity
G3M56_013055	COG0084	hydrolase, TatD family'
G3M56_013065	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
G3M56_013070	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
G3M56_013090	COG1872	DUF167
G3M56_013100	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
G3M56_013110	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
G3M56_013125	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
G3M56_013130	COG0514	ATP-dependent DNA helicase (RecQ)
G3M56_013145	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
G3M56_013160	COG1943	Transposase
G3M56_013210	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
G3M56_013220	COG0232	Belongs to the dGTPase family. Type 2 subfamily
G3M56_013250	COG3119	arylsulfatase activity
G3M56_013265	COG3119	arylsulfatase activity
G3M56_013270	COG0105	UTP biosynthetic process
G3M56_013275	COG3328	transposase activity
G3M56_013280	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
G3M56_013285	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
G3M56_013285	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
G3M56_013355	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
G3M56_013365	COG1595	DNA-templated transcription, initiation
G3M56_013370	COG0314	molybdopterin synthase activity
G3M56_013375	COG0315	cyclic pyranopterin monophosphate synthase activity
G3M56_013375	COG0746	molybdenum cofactor guanylyltransferase activity
G3M56_013380	COG0315	cyclic pyranopterin monophosphate synthase activity
G3M56_013385	COG0303	'Molybdopterin
G3M56_013400	COG0437	4 iron, 4 sulfur cluster binding
G3M56_013415	COG0243	molybdopterin cofactor binding
G3M56_013450	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
G3M56_013455	COG0124	histidyl-tRNA synthetase
G3M56_013460	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
G3M56_013470	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
G3M56_013475	COG1640	4-alpha-glucanotransferase
G3M56_013500	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
G3M56_013505	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
G3M56_013510	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
G3M56_013520	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
G3M56_013530	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
G3M56_013535	COG1611	Belongs to the LOG family
G3M56_013540	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
G3M56_013550	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
G3M56_013555	COG3012	SEC-C Motif Domain Protein
G3M56_013565	COG3250	beta-galactosidase activity
G3M56_013600	COG3119	arylsulfatase activity
G3M56_013610	COG0534	Mate efflux family protein
G3M56_013615	COG0542	response to heat
G3M56_013620	COG3869	Catalyzes the specific phosphorylation of arginine residues in
G3M56_013630	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
G3M56_013635	COG1136	(ABC) transporter
G3M56_013640	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
G3M56_013665	COG1388	LysM domain
G3M56_013665	COG4942	peptidase
G3M56_013685	COG0604	alcohol dehydrogenase
G3M56_013690	COG3345	alpha-galactosidase
G3M56_013695	COG0583	DNA-binding transcription factor activity
G3M56_013700	COG0783	Belongs to the Dps family
G3M56_013750	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
G3M56_013755	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
G3M56_013770	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
G3M56_013775	COG0251	oxidation-reduction process
G3M56_013800	COG0261	This protein binds to 23S rRNA in the presence of protein L20
G3M56_013805	COG0211	Belongs to the bacterial ribosomal protein bL27 family
G3M56_013825	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
G3M56_013870	COG0497	DNA recombination
G3M56_013875	COG0321	lipoyl(octanoyl) transferase activity
G3M56_013875	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
G3M56_013890	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
G3M56_013935	COG1609	Transcriptional regulator
G3M56_013940	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
G3M56_013950	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
G3M56_013955	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
G3M56_013960	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
G3M56_013990	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
G3M56_013995	COG0352	thiamine-phosphate diphosphorylase activity
G3M56_014000	COG0439	Biotin carboxylase
G3M56_014005	COG0511	ligase activity, forming carbon-carbon bonds
G3M56_014015	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
G3M56_014040	COG1193	negative regulation of DNA recombination
G3M56_014050	COG2264	protein methyltransferase activity
G3M56_014100	COG0583	DNA-binding transcription factor activity
G3M56_014115	COG0438	transferase activity, transferring glycosyl groups
G3M56_014120	COG0513	Belongs to the DEAD box helicase family
G3M56_014125	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
G3M56_014130	COG0671	phosphoesterase, PA-phosphatase related
G3M56_014145	COG0154	amidase activity
G3M56_014150	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
G3M56_014155	COG0745	RESPONSE REGULATOR receiver
G3M56_014160	COG5002	protein histidine kinase activity
G3M56_014165	COG0745	RESPONSE REGULATOR receiver
G3M56_014170	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
G3M56_014215	COG0673	inositol 2-dehydrogenase activity
G3M56_014225	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
G3M56_014230	COG1216	Glycosyl transferase, family 2
G3M56_014235	COG0066	3-isopropylmalate dehydratase activity
G3M56_014245	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
G3M56_014250	COG2326	polyphosphate kinase activity
G3M56_014255	COG0545	Peptidyl-prolyl cis-trans isomerase
G3M56_014260	COG1720	tRNA m6t6A37 methyltransferase activity
G3M56_014275	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family