locus-tag class description MM35RIKEN_00040 PF01381 Helix-turn-helix MM35RIKEN_00070 PF02486 Replication initiation factor MM35RIKEN_00070 PF18106 Rolling Circle replication initiation protein N-terminal domain MM35RIKEN_00220 PF00877 NlpC/P60 family MM35RIKEN_00240 PF01381 Helix-turn-helix MM35RIKEN_00240 PF07883 Cupin domain MM35RIKEN_00340 PF00291 Pyridoxal-phosphate dependent enzyme MM35RIKEN_00350 PF02082 Transcriptional regulator MM35RIKEN_00370 PF00120 Glutamine synthetase, catalytic domain MM35RIKEN_00370 PF03951 Glutamine synthetase, beta-Grasp domain MM35RIKEN_00390 PF01645 Conserved region in glutamate synthase MM35RIKEN_00390 PF13187 4Fe-4S dicluster domain MM35RIKEN_00400 PF00310 Glutamine amidotransferases class-II MM35RIKEN_00410 PF18318 Glutamine synthetase C-terminal domain MM35RIKEN_00410 PF00120 Glutamine synthetase, catalytic domain MM35RIKEN_00410 PF12437 Glutamine synthetase type III N terminal MM35RIKEN_00420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MM35RIKEN_00420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MM35RIKEN_00420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MM35RIKEN_00420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MM35RIKEN_00440 PF02590 Predicted SPOUT methyltransferase MM35RIKEN_00450 PF12706 Beta-lactamase superfamily domain MM35RIKEN_00460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MM35RIKEN_00470 PF01022 Bacterial regulatory protein, arsR family MM35RIKEN_00490 PF00403 Heavy-metal-associated domain MM35RIKEN_00500 PF02463 RecF/RecN/SMC N terminal domain MM35RIKEN_00500 PF06470 SMC proteins Flexible Hinge Domain MM35RIKEN_00510 PF02881 SRP54-type protein, helical bundle domain MM35RIKEN_00510 PF00448 SRP54-type protein, GTPase domain MM35RIKEN_00520 PF03725 3' exoribonuclease family, domain 2 MM35RIKEN_00520 PF01138 3' exoribonuclease family, domain 1 MM35RIKEN_00540 PF01725 Ham1 family MM35RIKEN_00550 PF01985 CRS1 / YhbY (CRM) domain MM35RIKEN_00560 PF01467 Cytidylyltransferase-like MM35RIKEN_00610 PF13419 Haloacid dehalogenase-like hydrolase MM35RIKEN_00620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MM35RIKEN_00620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MM35RIKEN_00620 PF02824 TGS domain MM35RIKEN_00620 PF03129 Anticodon binding domain MM35RIKEN_00640 PF00860 Permease family MM35RIKEN_00650 PF02632 BioY family MM35RIKEN_00660 PF08279 HTH domain MM35RIKEN_00660 PF03099 Biotin/lipoate A/B protein ligase family MM35RIKEN_00660 PF02237 Biotin protein ligase C terminal domain MM35RIKEN_00670 PF02417 Chromate transporter MM35RIKEN_00700 PF05979 Bacterial protein of unknown function (DUF896) MM35RIKEN_00710 PF17774 Putative RNA-binding domain in YlmH MM35RIKEN_00710 PF01479 S4 domain MM35RIKEN_00720 PF11999 Protein of unknown function (DUF3494) MM35RIKEN_00720 PF02368 Bacterial Ig-like domain (group 2) MM35RIKEN_00740 PF00485 Phosphoribulokinase / Uridine kinase family MM35RIKEN_00750 PF00485 Phosphoribulokinase / Uridine kinase family MM35RIKEN_00770 PF05697 Bacterial trigger factor protein (TF) MM35RIKEN_00770 PF05698 Bacterial trigger factor protein (TF) C-terminus MM35RIKEN_00770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MM35RIKEN_00790 PF13545 Crp-like helix-turn-helix domain MM35RIKEN_00790 PF00027 Cyclic nucleotide-binding domain MM35RIKEN_00800 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B MM35RIKEN_00800 PF00175 Oxidoreductase NAD-binding domain MM35RIKEN_00810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MM35RIKEN_00810 PF13247 4Fe-4S dicluster domain MM35RIKEN_00810 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_00820 PF03309 Type III pantothenate kinase MM35RIKEN_00860 PF03466 LysR substrate binding domain MM35RIKEN_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_00870 PF13302 Acetyltransferase (GNAT) domain MM35RIKEN_00880 PF03323 Bacillus/Clostridium GerA spore germination protein MM35RIKEN_00890 PF13344 Haloacid dehalogenase-like hydrolase MM35RIKEN_00910 PF03009 Glycerophosphoryl diester phosphodiesterase family MM35RIKEN_00930 PF01467 Cytidylyltransferase-like MM35RIKEN_00960 PF02381 MraZ protein, putative antitoxin-like MM35RIKEN_00970 PF01795 MraW methylase family MM35RIKEN_01000 PF00905 Penicillin binding protein transpeptidase domain MM35RIKEN_01000 PF03717 Penicillin-binding Protein dimerisation domain MM35RIKEN_01000 PF03793 PASTA domain MM35RIKEN_01010 PF08245 Mur ligase middle domain MM35RIKEN_01010 PF02875 Mur ligase family, glutamate ligase domain MM35RIKEN_01010 PF01225 Mur ligase family, catalytic domain MM35RIKEN_01020 PF00953 Glycosyl transferase family 4 MM35RIKEN_01020 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MM35RIKEN_01030 PF01098 Cell cycle protein MM35RIKEN_01040 PF03033 Glycosyltransferase family 28 N-terminal domain MM35RIKEN_01040 PF04101 Glycosyltransferase family 28 C-terminal domain MM35RIKEN_01050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MM35RIKEN_01060 PF03799 Cell division protein FtsQ MM35RIKEN_01060 PF08478 POTRA domain, FtsQ-type MM35RIKEN_01070 PF00091 Tubulin/FtsZ family, GTPase domain MM35RIKEN_01070 PF12327 FtsZ family, C-terminal domain MM35RIKEN_01090 PF00171 Aldehyde dehydrogenase family MM35RIKEN_01100 PF00696 Amino acid kinase family MM35RIKEN_01100 PF01472 PUA domain MM35RIKEN_01110 PF17820 PDZ domain MM35RIKEN_01110 PF05580 SpoIVB peptidase S55 MM35RIKEN_01250 PF03960 ArsC family MM35RIKEN_01290 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MM35RIKEN_01290 PF00749 tRNA synthetases class I (E and Q), catalytic domain MM35RIKEN_01320 PF13331 Domain of unknown function (DUF4093) MM35RIKEN_01320 PF13662 Toprim domain MM35RIKEN_01340 PF03772 Competence protein MM35RIKEN_01340 PF13567 Domain of unknown function (DUF4131) MM35RIKEN_01340 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_01360 PF02308 MgtC family MM35RIKEN_01370 PF01520 N-acetylmuramoyl-L-alanine amidase MM35RIKEN_01370 PF05036 Sporulation related domain MM35RIKEN_01420 PF13439 Glycosyltransferase Family 4 MM35RIKEN_01430 PF04991 LicD family MM35RIKEN_01460 PF00535 Glycosyl transferase family 2 MM35RIKEN_01480 PF05193 Peptidase M16 inactive domain MM35RIKEN_01490 PF00675 Insulinase (Peptidase family M16) MM35RIKEN_01490 PF05193 Peptidase M16 inactive domain MM35RIKEN_01500 PF01790 Prolipoprotein diacylglyceryl transferase MM35RIKEN_01510 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MM35RIKEN_01510 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MM35RIKEN_01520 PF01268 Formate--tetrahydrofolate ligase MM35RIKEN_01530 PF02645 Uncharacterised protein, DegV family COG1307 MM35RIKEN_01570 PF06135 IreB regulatory phosphoprotein MM35RIKEN_01580 PF03147 Ferredoxin-fold anticodon binding domain MM35RIKEN_01580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MM35RIKEN_01580 PF01588 Putative tRNA binding domain MM35RIKEN_01580 PF03484 tRNA synthetase B5 domain MM35RIKEN_01580 PF03483 B3/4 domain MM35RIKEN_01590 PF01409 tRNA synthetases class II core domain (F) MM35RIKEN_01590 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MM35RIKEN_01600 PF01256 Carbohydrate kinase MM35RIKEN_01600 PF03853 YjeF-related protein N-terminus MM35RIKEN_01620 PF00842 Alanine racemase, C-terminal domain MM35RIKEN_01620 PF01168 Alanine racemase, N-terminal domain MM35RIKEN_01630 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MM35RIKEN_01640 PF03477 ATP cone domain MM35RIKEN_01660 PF04239 Protein of unknown function (DUF421) MM35RIKEN_01670 PF01380 SIS domain MM35RIKEN_01700 PF03652 Holliday junction resolvase MM35RIKEN_01710 PF00471 Ribosomal protein L33 MM35RIKEN_01730 PF00467 KOW motif MM35RIKEN_01730 PF02357 Transcription termination factor nusG MM35RIKEN_01740 PF00298 Ribosomal protein L11, RNA binding domain MM35RIKEN_01740 PF03946 Ribosomal protein L11, N-terminal domain MM35RIKEN_01750 PF00687 Ribosomal protein L1p/L10e family MM35RIKEN_01760 PF00466 Ribosomal protein L10 MM35RIKEN_01770 PF00542 Ribosomal protein L7/L12 C-terminal domain MM35RIKEN_01770 PF16320 Ribosomal protein L7/L12 dimerisation domain MM35RIKEN_01800 PF11823 Protein of unknown function (DUF3343) MM35RIKEN_01800 PF01206 Sulfurtransferase TusA MM35RIKEN_01820 PF03466 LysR substrate binding domain MM35RIKEN_01820 PF00005 ABC transporter MM35RIKEN_01830 PF01048 Phosphorylase superfamily MM35RIKEN_01840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MM35RIKEN_01860 PF02525 Flavodoxin-like fold MM35RIKEN_01870 PF12706 Beta-lactamase superfamily domain MM35RIKEN_01870 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_01880 PF07670 Nucleoside recognition MM35RIKEN_01880 PF02421 Ferrous iron transport protein B MM35RIKEN_01880 PF17910 FeoB cytosolic helical domain MM35RIKEN_01880 PF07664 Ferrous iron transport protein B C terminus MM35RIKEN_01920 PF08279 HTH domain MM35RIKEN_01920 PF02829 3H domain MM35RIKEN_01950 PF00005 ABC transporter MM35RIKEN_01990 PF00155 Aminotransferase class I and II MM35RIKEN_02010 PF16123 Hydroxyacylglutathione hydrolase C-terminus MM35RIKEN_02010 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_02020 PF00696 Amino acid kinase family MM35RIKEN_02030 PF01765 Ribosome recycling factor MM35RIKEN_02040 PF01255 Putative undecaprenyl diphosphate synthase MM35RIKEN_02060 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MM35RIKEN_02060 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MM35RIKEN_02060 PF13288 DXP reductoisomerase C-terminal domain MM35RIKEN_02070 PF17820 PDZ domain MM35RIKEN_02070 PF02163 Peptidase family M50 MM35RIKEN_02080 PF04551 GcpE protein MM35RIKEN_02090 PF07733 Bacterial DNA polymerase III alpha NTPase domain MM35RIKEN_02090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MM35RIKEN_02090 PF14579 Helix-hairpin-helix motif MM35RIKEN_02090 PF02811 PHP domain MM35RIKEN_02090 PF00929 Exonuclease MM35RIKEN_02090 PF11490 DNA polymerase III polC-type N-terminus II MM35RIKEN_02110 PF00707 Translation initiation factor IF-3, C-terminal domain MM35RIKEN_02110 PF05198 Translation initiation factor IF-3, N-terminal domain MM35RIKEN_02120 PF01632 Ribosomal protein L35 MM35RIKEN_02130 PF00453 Ribosomal protein L20 MM35RIKEN_02140 PF00258 Flavodoxin MM35RIKEN_02140 PF00301 Rubredoxin MM35RIKEN_02140 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_02150 PF13091 PLD-like domain MM35RIKEN_02170 PF02390 Putative methyltransferase MM35RIKEN_02180 PF00378 Enoyl-CoA hydratase/isomerase MM35RIKEN_02190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MM35RIKEN_02190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MM35RIKEN_02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MM35RIKEN_02200 PF02770 Acyl-CoA dehydrogenase, middle domain MM35RIKEN_02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MM35RIKEN_02210 PF01012 Electron transfer flavoprotein domain MM35RIKEN_02220 PF00766 Electron transfer flavoprotein FAD-binding domain MM35RIKEN_02220 PF01012 Electron transfer flavoprotein domain MM35RIKEN_02260 PF04260 Protein of unknown function (DUF436) MM35RIKEN_02280 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_02280 PF00155 Aminotransferase class I and II MM35RIKEN_02290 PF01272 Transcription elongation factor, GreA/GreB, C-term MM35RIKEN_02290 PF03449 Transcription elongation factor, N-terminal MM35RIKEN_02320 PF07451 Stage V sporulation protein AD (SpoVAD) MM35RIKEN_02330 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MM35RIKEN_02340 PF02583 Metal-sensitive transcriptional repressor MM35RIKEN_02350 PF00403 Heavy-metal-associated domain MM35RIKEN_02370 PF00589 Phage integrase family MM35RIKEN_02370 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_02400 PF17762 HTH domain found in ParB protein MM35RIKEN_02400 PF02195 ParB-like nuclease domain MM35RIKEN_02510 PF00679 Elongation factor G C-terminus MM35RIKEN_02510 PF14492 Elongation Factor G, domain II MM35RIKEN_02510 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_02510 PF03764 Elongation factor G, domain IV MM35RIKEN_02580 PF01695 IstB-like ATP binding protein MM35RIKEN_02680 PF01381 Helix-turn-helix MM35RIKEN_02690 PF03389 MobA/MobL family MM35RIKEN_02690 PF01443 Viral (Superfamily 1) RNA helicase MM35RIKEN_02690 PF17841 BID domain of Bartonella effector protein (Bep) MM35RIKEN_02700 PF08278 DNA primase DnaG DnaB-binding MM35RIKEN_02700 PF01807 CHC2 zinc finger MM35RIKEN_02700 PF10410 DnaB-helicase binding domain of primase MM35RIKEN_02700 PF08275 DNA primase catalytic core, N-terminal domain MM35RIKEN_02780 PF00877 NlpC/P60 family MM35RIKEN_02800 PF00877 NlpC/P60 family MM35RIKEN_02800 PF08239 Bacterial SH3 domain MM35RIKEN_02800 PF01476 LysM domain MM35RIKEN_02820 PF01131 DNA topoisomerase MM35RIKEN_02820 PF01751 Toprim domain MM35RIKEN_02900 PF08275 DNA primase catalytic core, N-terminal domain MM35RIKEN_02900 PF01807 CHC2 zinc finger MM35RIKEN_02930 PF01751 Toprim domain MM35RIKEN_02930 PF01131 DNA topoisomerase MM35RIKEN_02980 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_03000 PF12833 Helix-turn-helix domain MM35RIKEN_03030 PF00005 ABC transporter MM35RIKEN_03040 PF08021 Siderophore-interacting FAD-binding domain MM35RIKEN_03040 PF00005 ABC transporter MM35RIKEN_03040 PF04954 Siderophore-interacting protein MM35RIKEN_03040 PF00664 ABC transporter transmembrane region MM35RIKEN_03050 PF00005 ABC transporter MM35RIKEN_03050 PF00664 ABC transporter transmembrane region MM35RIKEN_03060 PF18357 Diphteria toxin repressor SH3 domain MM35RIKEN_03060 PF01325 Iron dependent repressor, N-terminal DNA binding domain MM35RIKEN_03060 PF02742 Iron dependent repressor, metal binding and dimerisation domain MM35RIKEN_03120 PF00679 Elongation factor G C-terminus MM35RIKEN_03120 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_03120 PF14492 Elongation Factor G, domain II MM35RIKEN_03120 PF03144 Elongation factor Tu domain 2 MM35RIKEN_03130 PF09084 NMT1/THI5 like MM35RIKEN_03140 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_03150 PF00005 ABC transporter MM35RIKEN_03160 PF03070 TENA/THI-4/PQQC family MM35RIKEN_03170 PF08543 Phosphomethylpyrimidine kinase MM35RIKEN_03170 PF02581 Thiamine monophosphate synthase MM35RIKEN_03180 PF02581 Thiamine monophosphate synthase MM35RIKEN_03190 PF02110 Hydroxyethylthiazole kinase family MM35RIKEN_03220 PF07670 Nucleoside recognition MM35RIKEN_03220 PF02421 Ferrous iron transport protein B MM35RIKEN_03220 PF17910 FeoB cytosolic helical domain MM35RIKEN_03220 PF07664 Ferrous iron transport protein B C terminus MM35RIKEN_03250 PF00318 Ribosomal protein S2 MM35RIKEN_03260 PF00889 Elongation factor TS MM35RIKEN_03280 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MM35RIKEN_03280 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MM35RIKEN_03280 PF00111 2Fe-2S iron-sulfur cluster binding domain MM35RIKEN_03280 PF01799 [2Fe-2S] binding domain MM35RIKEN_03290 PF00111 2Fe-2S iron-sulfur cluster binding domain MM35RIKEN_03290 PF01799 [2Fe-2S] binding domain MM35RIKEN_03320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MM35RIKEN_03320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MM35RIKEN_03320 PF01799 [2Fe-2S] binding domain MM35RIKEN_03330 PF02645 Uncharacterised protein, DegV family COG1307 MM35RIKEN_03350 PF00440 Bacterial regulatory proteins, tetR family MM35RIKEN_03350 PF17932 Tetracyclin repressor-like, C-terminal domain MM35RIKEN_03380 PF00005 ABC transporter MM35RIKEN_03380 PF12399 Branched-chain amino acid ATP-binding cassette transporter MM35RIKEN_03390 PF00005 ABC transporter MM35RIKEN_03410 PF00561 alpha/beta hydrolase fold MM35RIKEN_03420 PF12697 Alpha/beta hydrolase family MM35RIKEN_03440 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MM35RIKEN_03440 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MM35RIKEN_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_03450 PF03466 LysR substrate binding domain MM35RIKEN_03460 PF02954 Bacterial regulatory protein, Fis family MM35RIKEN_03460 PF06505 Activator of aromatic catabolism MM35RIKEN_03460 PF00158 Sigma-54 interaction domain MM35RIKEN_03460 PF02830 V4R domain MM35RIKEN_03470 PF00701 Dihydrodipicolinate synthetase family MM35RIKEN_03480 PF00465 Iron-containing alcohol dehydrogenase MM35RIKEN_03490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MM35RIKEN_03510 PF00375 Sodium:dicarboxylate symporter family MM35RIKEN_03520 PF00155 Aminotransferase class I and II MM35RIKEN_03570 PF01451 Low molecular weight phosphotyrosine protein phosphatase MM35RIKEN_03650 PF12161 HsdM N-terminal domain MM35RIKEN_03650 PF02384 N-6 DNA Methylase MM35RIKEN_03720 PF02195 ParB-like nuclease domain MM35RIKEN_03720 PF17762 HTH domain found in ParB protein MM35RIKEN_03880 PF00877 NlpC/P60 family MM35RIKEN_04000 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_04030 PF00106 short chain dehydrogenase MM35RIKEN_04040 PF00072 Response regulator receiver domain MM35RIKEN_04040 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_04080 PF02926 THUMP domain MM35RIKEN_04080 PF10672 S-adenosylmethionine-dependent methyltransferase MM35RIKEN_04080 PF01170 Putative RNA methylase family UPF0020 MM35RIKEN_04090 PF00005 ABC transporter MM35RIKEN_04100 PF00005 ABC transporter MM35RIKEN_04110 PF02361 Cobalt transport protein MM35RIKEN_04120 PF01416 tRNA pseudouridine synthase MM35RIKEN_04150 PF17871 AAA lid domain MM35RIKEN_04150 PF02861 Clp amino terminal domain, pathogenicity island component MM35RIKEN_04150 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_04150 PF10431 C-terminal, D2-small domain, of ClpB protein MM35RIKEN_04150 PF07724 AAA domain (Cdc48 subfamily) MM35RIKEN_04190 PF13419 Haloacid dehalogenase-like hydrolase MM35RIKEN_04200 PF02245 Methylpurine-DNA glycosylase (MPG) MM35RIKEN_04210 PF00892 EamA-like transporter family MM35RIKEN_04220 PF01863 Protein of unknown function DUF45 MM35RIKEN_04240 PF00293 NUDIX domain MM35RIKEN_04250 PF04463 Protein of unknown function (DUF523) MM35RIKEN_04260 PF02446 4-alpha-glucanotransferase MM35RIKEN_04270 PF00005 ABC transporter MM35RIKEN_04280 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_04300 PF03459 TOBE domain MM35RIKEN_04310 PF01293 Phosphoenolpyruvate carboxykinase MM35RIKEN_04370 PF01061 ABC-2 type transporter MM35RIKEN_04370 PF01061 ABC-2 type transporter MM35RIKEN_04380 PF13167 GTP-binding GTPase N-terminal MM35RIKEN_04380 PF01926 50S ribosome-binding GTPase MM35RIKEN_04380 PF16360 GTP-binding GTPase Middle Region MM35RIKEN_04390 PF01205 Uncharacterized protein family UPF0029 MM35RIKEN_04390 PF09186 Domain of unknown function (DUF1949) MM35RIKEN_04410 PF01546 Peptidase family M20/M25/M40 MM35RIKEN_04410 PF07687 Peptidase dimerisation domain MM35RIKEN_04420 PF13180 PDZ domain MM35RIKEN_04450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MM35RIKEN_04470 PF12705 PD-(D/E)XK nuclease superfamily MM35RIKEN_04480 PF13361 UvrD-like helicase C-terminal domain MM35RIKEN_04480 PF12705 PD-(D/E)XK nuclease superfamily MM35RIKEN_04480 PF00580 UvrD/REP helicase N-terminal domain MM35RIKEN_04490 PF01197 Ribosomal protein L31 MM35RIKEN_04500 PF04539 Sigma-70 region 3 MM35RIKEN_04500 PF04542 Sigma-70 region 2 MM35RIKEN_04500 PF04545 Sigma-70, region 4 MM35RIKEN_04510 PF00266 Aminotransferase class-V MM35RIKEN_04560 PF00730 HhH-GPD superfamily base excision DNA repair protein MM35RIKEN_04560 PF00633 Helix-hairpin-helix motif MM35RIKEN_04570 PF16193 AAA C-terminal domain MM35RIKEN_04570 PF12002 MgsA AAA+ ATPase C terminal MM35RIKEN_04570 PF05496 Holliday junction DNA helicase RuvB P-loop domain MM35RIKEN_04580 PF06107 Bacterial protein of unknown function (DUF951) MM35RIKEN_04590 PF01791 DeoC/LacD family aldolase MM35RIKEN_04600 PF01048 Phosphorylase superfamily MM35RIKEN_04620 PF00005 ABC transporter MM35RIKEN_04630 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_04640 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_04650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MM35RIKEN_04650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MM35RIKEN_04660 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_04660 PF07729 FCD domain MM35RIKEN_04670 PF00920 Dehydratase family MM35RIKEN_04770 PF03063 Prismane/CO dehydrogenase family MM35RIKEN_04820 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_04820 PF00072 Response regulator receiver domain MM35RIKEN_04830 PF13426 PAS domain MM35RIKEN_04830 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_04830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_04830 PF00672 HAMP domain MM35RIKEN_04860 PF13545 Crp-like helix-turn-helix domain MM35RIKEN_04860 PF00027 Cyclic nucleotide-binding domain MM35RIKEN_04880 PF00301 Rubredoxin MM35RIKEN_04920 PF06100 MCRA family MM35RIKEN_04970 PF02690 Na+/Pi-cotransporter MM35RIKEN_04980 PF00072 Response regulator receiver domain MM35RIKEN_04980 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_04990 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_05000 PF02690 Na+/Pi-cotransporter MM35RIKEN_05050 PF00849 RNA pseudouridylate synthase MM35RIKEN_05050 PF01479 S4 domain MM35RIKEN_05060 PF00768 D-alanyl-D-alanine carboxypeptidase MM35RIKEN_05060 PF07943 Penicillin-binding protein 5, C-terminal domain MM35RIKEN_05070 PF10531 SLBB domain MM35RIKEN_05080 PF00072 Response regulator receiver domain MM35RIKEN_05080 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_05090 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_05090 PF00989 PAS fold MM35RIKEN_05090 PF16736 Single Cache-like MM35RIKEN_05130 PF09269 Domain of unknown function (DUF1967) MM35RIKEN_05130 PF01926 50S ribosome-binding GTPase MM35RIKEN_05130 PF01018 GTP1/OBG MM35RIKEN_05170 PF02163 Peptidase family M50 MM35RIKEN_05180 PF02616 Segregation and condensation protein ScpA MM35RIKEN_05190 PF04079 Segregation and condensation complex subunit ScpB MM35RIKEN_05210 PF09579 Sporulation protein YtfJ (Spore_YtfJ) MM35RIKEN_05220 PF07943 Penicillin-binding protein 5, C-terminal domain MM35RIKEN_05220 PF00768 D-alanyl-D-alanine carboxypeptidase MM35RIKEN_05230 PF01479 S4 domain MM35RIKEN_05230 PF00849 RNA pseudouridylate synthase MM35RIKEN_05260 PF02224 Cytidylate kinase MM35RIKEN_05280 PF02401 LytB protein MM35RIKEN_05280 PF00575 S1 RNA binding domain MM35RIKEN_05300 PF00266 Aminotransferase class-V MM35RIKEN_05310 PF02457 DisA bacterial checkpoint controller nucleotide-binding MM35RIKEN_05350 PF01556 DnaJ C terminal domain MM35RIKEN_05350 PF00684 DnaJ central domain MM35RIKEN_05350 PF00226 DnaJ domain MM35RIKEN_05360 PF08340 Domain of unknown function (DUF1732) MM35RIKEN_05360 PF03755 YicC-like family, N-terminal region MM35RIKEN_05370 PF04025 Domain of unknown function (DUF370) MM35RIKEN_05380 PF00625 Guanylate kinase MM35RIKEN_05390 PF01192 RNA polymerase Rpb6 MM35RIKEN_05400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MM35RIKEN_05400 PF18074 Primosomal protein N C-terminal domain MM35RIKEN_05400 PF00271 Helicase conserved C-terminal domain MM35RIKEN_05400 PF04851 Type III restriction enzyme, res subunit MM35RIKEN_05400 PF17764 3′ DNA-binding domain (3′BD) MM35RIKEN_05410 PF01327 Polypeptide deformylase MM35RIKEN_05420 PF02911 Formyl transferase, C-terminal domain MM35RIKEN_05420 PF00551 Formyl transferase MM35RIKEN_05430 PF01189 16S rRNA methyltransferase RsmB/F MM35RIKEN_05430 PF01029 NusB family MM35RIKEN_05440 PF04055 Radical SAM superfamily MM35RIKEN_05460 PF00069 Protein kinase domain MM35RIKEN_05460 PF03793 PASTA domain MM35RIKEN_05470 PF03193 RsgA GTPase MM35RIKEN_05470 PF16745 RsgA N-terminal domain MM35RIKEN_05500 PF00636 Ribonuclease III domain MM35RIKEN_05510 PF05670 NFACT protein RNA binding domain MM35RIKEN_05520 PF04070 Domain of unknown function (DUF378) MM35RIKEN_05550 PF00288 GHMP kinases N terminal domain MM35RIKEN_05550 PF08544 GHMP kinases C terminal MM35RIKEN_05560 PF09551 Stage II sporulation protein R (spore_II_R) MM35RIKEN_05570 PF02719 Polysaccharide biosynthesis protein MM35RIKEN_05580 PF08264 Anticodon-binding domain of tRNA MM35RIKEN_05580 PF10458 Valyl tRNA synthetase tRNA binding arm MM35RIKEN_05580 PF00133 tRNA synthetases class I (I, L, M and V) MM35RIKEN_05610 PF13581 Histidine kinase-like ATPase domain MM35RIKEN_05620 PF04542 Sigma-70 region 2 MM35RIKEN_05620 PF04545 Sigma-70, region 4 MM35RIKEN_05620 PF04539 Sigma-70 region 3 MM35RIKEN_05650 PF00580 UvrD/REP helicase N-terminal domain MM35RIKEN_05650 PF13361 UvrD-like helicase C-terminal domain MM35RIKEN_05660 PF01926 50S ribosome-binding GTPase MM35RIKEN_05670 PF01351 Ribonuclease HII MM35RIKEN_05680 PF02021 Uncharacterised protein family UPF0102 MM35RIKEN_05690 PF01244 Membrane dipeptidase (Peptidase family M19) MM35RIKEN_05710 PF05698 Bacterial trigger factor protein (TF) C-terminus MM35RIKEN_05710 PF05697 Bacterial trigger factor protein (TF) MM35RIKEN_05710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MM35RIKEN_05720 PF00574 Clp protease MM35RIKEN_05730 PF10431 C-terminal, D2-small domain, of ClpB protein MM35RIKEN_05730 PF07724 AAA domain (Cdc48 subfamily) MM35RIKEN_05730 PF06689 ClpX C4-type zinc finger MM35RIKEN_05740 PF02190 ATP-dependent protease La (LON) substrate-binding domain MM35RIKEN_05740 PF05362 Lon protease (S16) C-terminal proteolytic domain MM35RIKEN_05740 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_05750 PF01926 50S ribosome-binding GTPase MM35RIKEN_05760 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MM35RIKEN_05760 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MM35RIKEN_05770 PF03266 NTPase MM35RIKEN_05780 PF00830 Ribosomal L28 family MM35RIKEN_05790 PF02603 HPr Serine kinase N terminus MM35RIKEN_05790 PF07475 HPr Serine kinase C-terminal domain MM35RIKEN_05800 PF00480 ROK family MM35RIKEN_05810 PF01565 FAD binding domain MM35RIKEN_05810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MM35RIKEN_05820 PF03668 P-loop ATPase protein family MM35RIKEN_05830 PF01933 Uncharacterised protein family UPF0052 MM35RIKEN_05840 PF14527 WhiA LAGLIDADG-like domain MM35RIKEN_05840 PF10298 WhiA N-terminal LAGLIDADG-like domain MM35RIKEN_05840 PF02650 WhiA C-terminal HTH domain MM35RIKEN_05860 PF07733 Bacterial DNA polymerase III alpha NTPase domain MM35RIKEN_05860 PF02811 PHP domain MM35RIKEN_05860 PF01336 OB-fold nucleic acid binding domain MM35RIKEN_05860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MM35RIKEN_05860 PF14579 Helix-hairpin-helix motif MM35RIKEN_05930 PF06686 Stage III sporulation protein AC/AD protein family MM35RIKEN_05940 PF06686 Stage III sporulation protein AC/AD protein family MM35RIKEN_06000 PF01029 NusB family MM35RIKEN_06010 PF13742 OB-fold nucleic acid binding domain MM35RIKEN_06010 PF02601 Exonuclease VII, large subunit MM35RIKEN_06020 PF02609 Exonuclease VII small subunit MM35RIKEN_06030 PF00348 Polyprenyl synthetase MM35RIKEN_06060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MM35RIKEN_06060 PF02780 Transketolase, C-terminal domain MM35RIKEN_06060 PF02779 Transketolase, pyrimidine binding domain MM35RIKEN_06070 PF01728 FtsJ-like methyltransferase MM35RIKEN_06070 PF01479 S4 domain MM35RIKEN_06080 PF01513 ATP-NAD kinase MM35RIKEN_06090 PF02863 Arginine repressor, C-terminal domain MM35RIKEN_06090 PF01316 Arginine repressor, DNA binding domain MM35RIKEN_06100 PF13476 AAA domain MM35RIKEN_06110 PF00579 tRNA synthetases class I (W and Y) MM35RIKEN_06120 PF02547 Queuosine biosynthesis protein MM35RIKEN_06130 PF01702 Queuine tRNA-ribosyltransferase MM35RIKEN_06170 PF00589 Phage integrase family MM35RIKEN_06170 PF02899 Phage integrase, N-terminal SAM-like domain MM35RIKEN_06180 PF02779 Transketolase, pyrimidine binding domain MM35RIKEN_06180 PF02780 Transketolase, C-terminal domain MM35RIKEN_06190 PF00456 Transketolase, thiamine diphosphate binding domain MM35RIKEN_06200 PF02899 Phage integrase, N-terminal SAM-like domain MM35RIKEN_06200 PF00589 Phage integrase family MM35RIKEN_06220 PF01515 Phosphate acetyl/butaryl transferase MM35RIKEN_06240 PF18073 Rubredoxin metal binding domain MM35RIKEN_06250 PF01520 N-acetylmuramoyl-L-alanine amidase MM35RIKEN_06270 PF05067 Manganese containing catalase MM35RIKEN_06310 PF09704 CRISPR-associated protein (Cas_Cas5) MM35RIKEN_06350 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_06370 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_06370 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MM35RIKEN_06370 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MM35RIKEN_06380 PF10371 Domain of unknown function MM35RIKEN_06380 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MM35RIKEN_06380 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_06380 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MM35RIKEN_06380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MM35RIKEN_06390 PF01381 Helix-turn-helix MM35RIKEN_06400 PF04542 Sigma-70 region 2 MM35RIKEN_06400 PF04545 Sigma-70, region 4 MM35RIKEN_06420 PF01116 Fructose-bisphosphate aldolase class-II MM35RIKEN_06430 PF00365 Phosphofructokinase MM35RIKEN_06450 PF03309 Type III pantothenate kinase MM35RIKEN_06460 PF09547 Stage IV sporulation protein A (spore_IV_A) MM35RIKEN_06470 PF01709 Transcriptional regulator MM35RIKEN_06480 PF01784 NIF3 (NGG1p interacting factor 3) MM35RIKEN_06490 PF04816 tRNA (adenine(22)-N(1))-methyltransferase MM35RIKEN_06520 PF04542 Sigma-70 region 2 MM35RIKEN_06520 PF08281 Sigma-70, region 4 MM35RIKEN_06530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MM35RIKEN_06530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MM35RIKEN_06530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MM35RIKEN_06530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MM35RIKEN_06540 PF17864 RuvB AAA lid domain MM35RIKEN_06540 PF05491 RuvB C-terminal winged helix domain MM35RIKEN_06540 PF05496 Holliday junction DNA helicase RuvB P-loop domain MM35RIKEN_06550 PF07499 RuvA, C-terminal domain MM35RIKEN_06550 PF01330 RuvA N terminal domain MM35RIKEN_06560 PF02075 Crossover junction endodeoxyribonuclease RuvC MM35RIKEN_06580 PF02677 Epoxyqueuosine reductase QueH MM35RIKEN_06590 PF01842 ACT domain MM35RIKEN_06610 PF12627 Probable RNA and SrmB- binding site of polymerase A MM35RIKEN_06610 PF13735 tRNA nucleotidyltransferase domain 2 putative MM35RIKEN_06610 PF01743 Poly A polymerase head domain MM35RIKEN_06620 PF01225 Mur ligase family, catalytic domain MM35RIKEN_06620 PF02875 Mur ligase family, glutamate ligase domain MM35RIKEN_06620 PF08245 Mur ligase middle domain MM35RIKEN_06640 PF10410 DnaB-helicase binding domain of primase MM35RIKEN_06640 PF01807 CHC2 zinc finger MM35RIKEN_06640 PF08275 DNA primase catalytic core, N-terminal domain MM35RIKEN_06650 PF03979 Sigma-70 factor, region 1.1 MM35RIKEN_06650 PF00140 Sigma-70 factor, region 1.2 MM35RIKEN_06650 PF04542 Sigma-70 region 2 MM35RIKEN_06650 PF04539 Sigma-70 region 3 MM35RIKEN_06650 PF04545 Sigma-70, region 4 MM35RIKEN_06670 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MM35RIKEN_06670 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MM35RIKEN_06680 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MM35RIKEN_06680 PF10371 Domain of unknown function MM35RIKEN_06680 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_06680 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MM35RIKEN_06680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MM35RIKEN_06690 PF03120 NAD-dependent DNA ligase OB-fold domain MM35RIKEN_06690 PF01653 NAD-dependent DNA ligase adenylation domain MM35RIKEN_06690 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MM35RIKEN_06690 PF00533 BRCA1 C Terminus (BRCT) domain MM35RIKEN_06690 PF12826 Helix-hairpin-helix motif MM35RIKEN_06710 PF08245 Mur ligase middle domain MM35RIKEN_06720 PF00497 Bacterial extracellular solute-binding proteins, family 3 MM35RIKEN_06730 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_06740 PF00005 ABC transporter MM35RIKEN_06830 PF06971 Putative DNA-binding protein N-terminus MM35RIKEN_06830 PF02629 CoA binding domain MM35RIKEN_06870 PF01515 Phosphate acetyl/butaryl transferase MM35RIKEN_06880 PF00155 Aminotransferase class I and II MM35RIKEN_06890 PF03590 Aspartate-ammonia ligase MM35RIKEN_06900 PF17746 SfsA N-terminal OB domain MM35RIKEN_06900 PF03749 Sugar fermentation stimulation protein RE domain MM35RIKEN_06920 PF00364 Biotin-requiring enzyme MM35RIKEN_06930 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit MM35RIKEN_06940 PF00364 Biotin-requiring enzyme MM35RIKEN_06940 PF00682 HMGL-like MM35RIKEN_06940 PF02436 Conserved carboxylase domain MM35RIKEN_06960 PF01230 HIT domain MM35RIKEN_06980 PF02272 DHHA1 domain MM35RIKEN_06980 PF01411 tRNA synthetases class II (A) MM35RIKEN_06980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MM35RIKEN_06990 PF00302 Chloramphenicol acetyltransferase MM35RIKEN_07010 PF03477 ATP cone domain MM35RIKEN_07010 PF13597 Anaerobic ribonucleoside-triphosphate reductase MM35RIKEN_07030 PF06130 Phosphate propanoyltransferase MM35RIKEN_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_07050 PF03466 LysR substrate binding domain MM35RIKEN_07060 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MM35RIKEN_07060 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MM35RIKEN_07070 PF00156 Phosphoribosyl transferase domain MM35RIKEN_07080 PF13382 Adenine deaminase C-terminal domain MM35RIKEN_07080 PF01979 Amidohydrolase family MM35RIKEN_07090 PF01245 Ribosomal protein L19 MM35RIKEN_07140 PF00155 Aminotransferase class I and II MM35RIKEN_07160 PF00005 ABC transporter MM35RIKEN_07160 PF13732 Domain of unknown function (DUF4162) MM35RIKEN_07180 PF00398 Ribosomal RNA adenine dimethylase MM35RIKEN_07190 PF01136 Peptidase family U32 MM35RIKEN_07190 PF16325 Peptidase family U32 C-terminal domain MM35RIKEN_07200 PF02618 YceG-like family MM35RIKEN_07220 PF02223 Thymidylate kinase MM35RIKEN_07230 PF12850 Calcineurin-like phosphoesterase superfamily domain MM35RIKEN_07240 PF12897 Alanine-glyoxylate amino-transferase MM35RIKEN_07250 PF00795 Carbon-nitrogen hydrolase MM35RIKEN_07290 PF01144 Coenzyme A transferase MM35RIKEN_07300 PF01144 Coenzyme A transferase MM35RIKEN_07310 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP MM35RIKEN_07320 PF02310 B12 binding domain MM35RIKEN_07320 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase MM35RIKEN_07330 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit MM35RIKEN_07340 PF04055 Radical SAM superfamily MM35RIKEN_07340 PF12544 Lysine-2,3-aminomutase MM35RIKEN_07360 PF05853 beta-keto acid cleavage enzyme MM35RIKEN_07370 PF03061 Thioesterase superfamily MM35RIKEN_07380 PF01713 Smr domain MM35RIKEN_07380 PF00488 MutS domain V MM35RIKEN_07410 PF16828 GAG-binding domain on surface antigen MM35RIKEN_07410 PF00746 LPXTG cell wall anchor motif MM35RIKEN_07410 PF05062 RICH domain MM35RIKEN_07410 PF04650 YSIRK type signal peptide MM35RIKEN_07460 PF00285 Citrate synthase, C-terminal domain MM35RIKEN_07470 PF02146 Sir2 family MM35RIKEN_07490 PF01545 Cation efflux family MM35RIKEN_07490 PF16916 Dimerisation domain of Zinc Transporter MM35RIKEN_07530 PF00871 Acetokinase family MM35RIKEN_07540 PF04060 Putative Fe-S cluster MM35RIKEN_07570 PF00912 Transglycosylase MM35RIKEN_07570 PF00905 Penicillin binding protein transpeptidase domain MM35RIKEN_07600 PF00899 ThiF family MM35RIKEN_07620 PF01226 Formate/nitrite transporter MM35RIKEN_07630 PF03807 NADP oxidoreductase coenzyme F420-dependent MM35RIKEN_07630 PF14748 Pyrroline-5-carboxylate reductase dimerisation MM35RIKEN_07660 PF08207 Elongation factor P (EF-P) KOW-like domain MM35RIKEN_07660 PF01132 Elongation factor P (EF-P) OB domain MM35RIKEN_07660 PF09285 Elongation factor P, C-terminal MM35RIKEN_07670 PF01321 Creatinase/Prolidase N-terminal domain MM35RIKEN_07670 PF00557 Metallopeptidase family M24 MM35RIKEN_07700 PF01165 Ribosomal protein S21 MM35RIKEN_07710 PF08264 Anticodon-binding domain of tRNA MM35RIKEN_07710 PF00133 tRNA synthetases class I (I, L, M and V) MM35RIKEN_07710 PF13603 Leucyl-tRNA synthetase, Domain 2 MM35RIKEN_07710 PF09334 tRNA synthetases class I (M) MM35RIKEN_07730 PF00156 Phosphoribosyl transferase domain MM35RIKEN_07740 PF00958 GMP synthase C terminal domain MM35RIKEN_07740 PF02540 NAD synthase MM35RIKEN_07740 PF00117 Glutamine amidotransferase class-I MM35RIKEN_07750 PF02899 Phage integrase, N-terminal SAM-like domain MM35RIKEN_07750 PF00589 Phage integrase family MM35RIKEN_07790 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain MM35RIKEN_07790 PF13538 UvrD-like helicase C-terminal domain MM35RIKEN_07790 PF14490 Helix-hairpin-helix containing domain MM35RIKEN_07840 PF00533 BRCA1 C Terminus (BRCT) domain MM35RIKEN_07840 PF01653 NAD-dependent DNA ligase adenylation domain MM35RIKEN_07840 PF03120 NAD-dependent DNA ligase OB-fold domain MM35RIKEN_07840 PF12826 Helix-hairpin-helix motif MM35RIKEN_07940 PF00072 Response regulator receiver domain MM35RIKEN_07940 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_07950 PF04298 Putative neutral zinc metallopeptidase MM35RIKEN_08000 PF13091 PLD-like domain MM35RIKEN_08010 PF01594 AI-2E family transporter MM35RIKEN_08050 PF00005 ABC transporter MM35RIKEN_08050 PF00664 ABC transporter transmembrane region MM35RIKEN_08060 PF00664 ABC transporter transmembrane region MM35RIKEN_08060 PF00005 ABC transporter MM35RIKEN_08090 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_08090 PF17862 AAA+ lid domain MM35RIKEN_08090 PF06480 FtsH Extracellular MM35RIKEN_08090 PF01434 Peptidase family M41 MM35RIKEN_08100 PF01869 BadF/BadG/BcrA/BcrD ATPase family MM35RIKEN_08120 PF01553 Acyltransferase MM35RIKEN_08140 PF01066 CDP-alcohol phosphatidyltransferase MM35RIKEN_08180 PF06100 MCRA family MM35RIKEN_08200 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_08200 PF00072 Response regulator receiver domain MM35RIKEN_08210 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_08210 PF00672 HAMP domain MM35RIKEN_08220 PF00106 short chain dehydrogenase MM35RIKEN_08230 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_08240 PF03389 MobA/MobL family MM35RIKEN_08240 PF01443 Viral (Superfamily 1) RNA helicase MM35RIKEN_08240 PF17841 BID domain of Bartonella effector protein (Bep) MM35RIKEN_08410 PF00436 Single-strand binding protein family MM35RIKEN_08450 PF01381 Helix-turn-helix MM35RIKEN_08490 PF01076 Plasmid recombination enzyme MM35RIKEN_08510 PF00239 Resolvase, N terminal domain MM35RIKEN_08510 PF02796 Helix-turn-helix domain of resolvase MM35RIKEN_08630 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer MM35RIKEN_08720 PF00886 Ribosomal protein S16 MM35RIKEN_08730 PF02978 Signal peptide binding domain MM35RIKEN_08730 PF02881 SRP54-type protein, helical bundle domain MM35RIKEN_08730 PF00448 SRP54-type protein, GTPase domain MM35RIKEN_08740 PF04297 Putative helix-turn-helix protein, YlxM / p13 like MM35RIKEN_08750 PF01746 tRNA (Guanine-1)-methyltransferase MM35RIKEN_08760 PF01782 RimM N-terminal domain MM35RIKEN_08760 PF05239 PRC-barrel domain MM35RIKEN_08770 PF00728 Glycosyl hydrolase family 20, catalytic domain MM35RIKEN_08770 PF00746 LPXTG cell wall anchor motif MM35RIKEN_08770 PF04650 YSIRK type signal peptide MM35RIKEN_08770 PF07501 G5 domain MM35RIKEN_08780 PF01207 Dihydrouridine synthase (Dus) MM35RIKEN_08810 PF06838 Methionine gamma-lyase MM35RIKEN_08830 PF03458 UPF0126 domain MM35RIKEN_08850 PF04545 Sigma-70, region 4 MM35RIKEN_08850 PF04542 Sigma-70 region 2 MM35RIKEN_08870 PF03466 LysR substrate binding domain MM35RIKEN_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_08880 PF01235 Sodium:alanine symporter family MM35RIKEN_08900 PF13344 Haloacid dehalogenase-like hydrolase MM35RIKEN_08910 PF05167 Uncharacterised ACR (DUF711) MM35RIKEN_08940 PF00919 Uncharacterized protein family UPF0004 MM35RIKEN_08940 PF04055 Radical SAM superfamily MM35RIKEN_08940 PF01938 TRAM domain MM35RIKEN_08950 PF00266 Aminotransferase class-V MM35RIKEN_08960 PF01554 MatE MM35RIKEN_08970 PF13847 Methyltransferase domain MM35RIKEN_08980 PF03553 Na+/H+ antiporter family MM35RIKEN_09010 PF00072 Response regulator receiver domain MM35RIKEN_09030 PF00289 Biotin carboxylase, N-terminal domain MM35RIKEN_09030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MM35RIKEN_09030 PF00682 HMGL-like MM35RIKEN_09030 PF02436 Conserved carboxylase domain MM35RIKEN_09030 PF02785 Biotin carboxylase C-terminal domain MM35RIKEN_09030 PF00364 Biotin-requiring enzyme MM35RIKEN_09080 PF02535 ZIP Zinc transporter MM35RIKEN_09100 PF08241 Methyltransferase domain MM35RIKEN_09110 PF01209 ubiE/COQ5 methyltransferase family MM35RIKEN_09250 PF00772 DnaB-like helicase N terminal domain MM35RIKEN_09250 PF03796 DnaB-like helicase C terminal domain MM35RIKEN_09300 PF00589 Phage integrase family MM35RIKEN_09300 PF12167 Arm DNA-binding domain MM35RIKEN_09320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_09330 PF00072 Response regulator receiver domain MM35RIKEN_09330 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_09350 PF00005 ABC transporter MM35RIKEN_09450 PF01430 Hsp33 protein MM35RIKEN_09480 PF01371 Trp repressor protein MM35RIKEN_09500 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_09500 PF03144 Elongation factor Tu domain 2 MM35RIKEN_09500 PF16658 Class II release factor RF3, C-terminal domain MM35RIKEN_09520 PF01966 HD domain MM35RIKEN_09530 PF13091 PLD-like domain MM35RIKEN_09540 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MM35RIKEN_09540 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain MM35RIKEN_09540 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MM35RIKEN_09580 PF13416 Bacterial extracellular solute-binding protein MM35RIKEN_09590 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_09600 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_09610 PF00005 ABC transporter MM35RIKEN_09610 PF08402 TOBE domain MM35RIKEN_09620 PF00849 RNA pseudouridylate synthase MM35RIKEN_09630 PF02620 Large ribosomal RNA subunit accumulation protein YceD MM35RIKEN_09640 PF01783 Ribosomal L32p protein family MM35RIKEN_09670 PF01926 50S ribosome-binding GTPase MM35RIKEN_09670 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MM35RIKEN_09680 PF02660 Glycerol-3-phosphate acyltransferase MM35RIKEN_09710 PF02557 D-alanyl-D-alanine carboxypeptidase MM35RIKEN_09730 PF02567 Phenazine biosynthesis-like protein MM35RIKEN_09750 PF13478 XdhC Rossmann domain MM35RIKEN_09750 PF02625 XdhC and CoxI family MM35RIKEN_09770 PF00291 Pyridoxal-phosphate dependent enzyme MM35RIKEN_09810 PF01546 Peptidase family M20/M25/M40 MM35RIKEN_09810 PF07687 Peptidase dimerisation domain MM35RIKEN_09820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MM35RIKEN_09820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MM35RIKEN_09830 PF00696 Amino acid kinase family MM35RIKEN_09860 PF00005 ABC transporter MM35RIKEN_09870 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_09880 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_09890 PF01979 Amidohydrolase family MM35RIKEN_09920 PF00849 RNA pseudouridylate synthase MM35RIKEN_10000 PF01022 Bacterial regulatory protein, arsR family MM35RIKEN_10020 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_10120 PF00877 NlpC/P60 family MM35RIKEN_10160 PF01555 DNA methylase MM35RIKEN_10250 PF17762 HTH domain found in ParB protein MM35RIKEN_10250 PF02195 ParB-like nuclease domain MM35RIKEN_10260 PF00574 Clp protease MM35RIKEN_10280 PF12822 ECF transporter, substrate-specific component MM35RIKEN_10320 PF00005 ABC transporter MM35RIKEN_10350 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_10360 PF02542 YgbB family MM35RIKEN_10370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MM35RIKEN_10380 PF01381 Helix-turn-helix MM35RIKEN_10390 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MM35RIKEN_10390 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MM35RIKEN_10420 PF13684 Dihydroxyacetone kinase family MM35RIKEN_10420 PF02734 DAK2 domain MM35RIKEN_10430 PF00365 Phosphofructokinase MM35RIKEN_10450 PF00877 NlpC/P60 family MM35RIKEN_10470 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_10480 PF00005 ABC transporter MM35RIKEN_10490 PF00258 Flavodoxin MM35RIKEN_10540 PF00579 tRNA synthetases class I (W and Y) MM35RIKEN_10550 PF00749 tRNA synthetases class I (E and Q), catalytic domain MM35RIKEN_10570 PF12437 Glutamine synthetase type III N terminal MM35RIKEN_10570 PF18318 Glutamine synthetase C-terminal domain MM35RIKEN_10570 PF00120 Glutamine synthetase, catalytic domain MM35RIKEN_10580 PF05231 MASE1 MM35RIKEN_10580 PF00563 EAL domain MM35RIKEN_10660 PF02659 Putative manganese efflux pump MM35RIKEN_10670 PF00588 SpoU rRNA Methylase family MM35RIKEN_10680 PF04239 Protein of unknown function (DUF421) MM35RIKEN_10690 PF00654 Voltage gated chloride channel MM35RIKEN_10700 PF00266 Aminotransferase class-V MM35RIKEN_10710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MM35RIKEN_10710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MM35RIKEN_10720 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MM35RIKEN_10720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MM35RIKEN_10730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MM35RIKEN_10730 PF02874 ATP synthase alpha/beta family, beta-barrel domain MM35RIKEN_10740 PF00231 ATP synthase MM35RIKEN_10750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MM35RIKEN_10750 PF00306 ATP synthase alpha/beta chain, C terminal domain MM35RIKEN_10750 PF02874 ATP synthase alpha/beta family, beta-barrel domain MM35RIKEN_10760 PF00430 ATP synthase B/B' CF(0) MM35RIKEN_10770 PF00137 ATP synthase subunit C MM35RIKEN_10790 PF00119 ATP synthase A chain MM35RIKEN_10810 PF03641 Possible lysine decarboxylase MM35RIKEN_10820 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_10820 PF17866 AAA lid domain MM35RIKEN_10850 PF02424 ApbE family MM35RIKEN_10860 PF02132 RecR protein MM35RIKEN_10860 PF13662 Toprim domain MM35RIKEN_10870 PF00834 Ribulose-phosphate 3 epimerase family MM35RIKEN_10880 PF02073 Thermophilic metalloprotease (M29) MM35RIKEN_10890 PF02080 TrkA-C domain MM35RIKEN_10890 PF02254 TrkA-N domain MM35RIKEN_10900 PF03631 Virulence factor BrkB MM35RIKEN_10950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MM35RIKEN_10960 PF00271 Helicase conserved C-terminal domain MM35RIKEN_10960 PF00270 DEAD/DEAH box helicase MM35RIKEN_10970 PF00343 Carbohydrate phosphorylase MM35RIKEN_10980 PF00534 Glycosyl transferases group 1 MM35RIKEN_10980 PF08323 Starch synthase catalytic domain MM35RIKEN_10990 PF00483 Nucleotidyl transferase MM35RIKEN_11000 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_11000 PF00483 Nucleotidyl transferase MM35RIKEN_11010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MM35RIKEN_11010 PF02806 Alpha amylase, C-terminal all-beta domain MM35RIKEN_11010 PF00128 Alpha amylase, catalytic domain MM35RIKEN_11030 PF03315 Serine dehydratase beta chain MM35RIKEN_11030 PF03313 Serine dehydratase alpha chain MM35RIKEN_11060 PF02554 Carbon starvation protein CstA MM35RIKEN_11060 PF13722 5TM C-terminal transporter carbon starvation CstA MM35RIKEN_11120 PF02384 N-6 DNA Methylase MM35RIKEN_11150 PF11867 Domain of unknown function (DUF3387) MM35RIKEN_11150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MM35RIKEN_11150 PF18766 SWI2/SNF2 ATPase MM35RIKEN_11160 PF01661 Macro domain MM35RIKEN_11240 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_11240 PF00589 Phage integrase family MM35RIKEN_11250 PF00589 Phage integrase family MM35RIKEN_11250 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_11290 PF02772 S-adenosylmethionine synthetase, central domain MM35RIKEN_11290 PF00438 S-adenosylmethionine synthetase, N-terminal domain MM35RIKEN_11290 PF02773 S-adenosylmethionine synthetase, C-terminal domain MM35RIKEN_11300 PF02567 Phenazine biosynthesis-like protein MM35RIKEN_11330 PF00155 Aminotransferase class I and II MM35RIKEN_11360 PF00156 Phosphoribosyl transferase domain MM35RIKEN_11370 PF13538 UvrD-like helicase C-terminal domain MM35RIKEN_11370 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain MM35RIKEN_11370 PF14490 Helix-hairpin-helix containing domain MM35RIKEN_11390 PF17760 UvrA interaction domain MM35RIKEN_11390 PF17755 UvrA DNA-binding domain MM35RIKEN_11410 PF04073 Aminoacyl-tRNA editing domain MM35RIKEN_11430 PF00892 EamA-like transporter family MM35RIKEN_11450 PF04851 Type III restriction enzyme, res subunit MM35RIKEN_11450 PF02151 UvrB/uvrC motif MM35RIKEN_11450 PF12344 Ultra-violet resistance protein B MM35RIKEN_11450 PF17757 UvrB interaction domain MM35RIKEN_11450 PF00271 Helicase conserved C-terminal domain MM35RIKEN_11460 PF01991 ATP synthase (E/31 kDa) subunit MM35RIKEN_11480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MM35RIKEN_11480 PF02874 ATP synthase alpha/beta family, beta-barrel domain MM35RIKEN_11480 PF16886 ATPsynthase alpha/beta subunit N-term extension MM35RIKEN_11490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MM35RIKEN_11490 PF02874 ATP synthase alpha/beta family, beta-barrel domain MM35RIKEN_11500 PF01813 ATP synthase subunit D MM35RIKEN_11530 PF04002 RadC-like JAB domain MM35RIKEN_11550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MM35RIKEN_11550 PF00037 4Fe-4S binding domain MM35RIKEN_11550 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MM35RIKEN_11560 PF02906 Iron only hydrogenase large subunit, C-terminal domain MM35RIKEN_11560 PF02256 Iron hydrogenase small subunit MM35RIKEN_11560 PF00037 4Fe-4S binding domain MM35RIKEN_11560 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MM35RIKEN_11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_11590 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_11590 PF00072 Response regulator receiver domain MM35RIKEN_11600 PF02687 FtsX-like permease family MM35RIKEN_11610 PF00005 ABC transporter MM35RIKEN_11630 PF07969 Amidohydrolase family MM35RIKEN_11650 PF01177 Asp/Glu/Hydantoin racemase MM35RIKEN_11670 PF01979 Amidohydrolase family MM35RIKEN_11680 PF13520 Amino acid permease MM35RIKEN_11690 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family MM35RIKEN_11700 PF12228 Protein of unknown function (DUF3604) MM35RIKEN_11770 PF00733 Asparagine synthase MM35RIKEN_11770 PF13537 Glutamine amidotransferase domain MM35RIKEN_11780 PF06418 CTP synthase N-terminus MM35RIKEN_11780 PF00117 Glutamine amidotransferase class-I MM35RIKEN_11790 PF02127 Aminopeptidase I zinc metalloprotease (M18) MM35RIKEN_11800 PF03481 Putative GTP-binding controlling metal-binding MM35RIKEN_11800 PF01300 Telomere recombination MM35RIKEN_11820 PF03462 PCRF domain MM35RIKEN_11820 PF00472 RF-1 domain MM35RIKEN_11840 PF12848 ABC transporter MM35RIKEN_11840 PF16326 ABC transporter C-terminal domain MM35RIKEN_11840 PF00005 ABC transporter MM35RIKEN_11850 PF01225 Mur ligase family, catalytic domain MM35RIKEN_11850 PF02875 Mur ligase family, glutamate ligase domain MM35RIKEN_11850 PF08245 Mur ligase middle domain MM35RIKEN_11860 PF07478 D-ala D-ala ligase C-terminus MM35RIKEN_11860 PF01820 D-ala D-ala ligase N-terminus MM35RIKEN_11870 PF01098 Cell cycle protein MM35RIKEN_11880 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MM35RIKEN_11890 PF00814 Glycoprotease family MM35RIKEN_11910 PF01979 Amidohydrolase family MM35RIKEN_11930 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MM35RIKEN_11930 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_11960 PF00330 Aconitase family (aconitate hydratase) MM35RIKEN_11960 PF00694 Aconitase C-terminal domain MM35RIKEN_11970 PF00180 Isocitrate/isopropylmalate dehydrogenase MM35RIKEN_11980 PF07883 Cupin domain MM35RIKEN_12060 PF02554 Carbon starvation protein CstA MM35RIKEN_12120 PF01522 Polysaccharide deacetylase MM35RIKEN_12120 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain MM35RIKEN_12130 PF02872 5'-nucleotidase, C-terminal domain MM35RIKEN_12130 PF00149 Calcineurin-like phosphoesterase MM35RIKEN_12190 PF01212 Beta-eliminating lyase MM35RIKEN_12210 PF01569 PAP2 superfamily MM35RIKEN_12230 PF00892 EamA-like transporter family MM35RIKEN_12240 PF03816 Cell envelope-related transcriptional attenuator domain MM35RIKEN_12280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MM35RIKEN_12280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MM35RIKEN_12300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MM35RIKEN_12300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MM35RIKEN_12300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MM35RIKEN_12310 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_12320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MM35RIKEN_12330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MM35RIKEN_12330 PF14602 Hexapeptide repeat of succinyl-transferase MM35RIKEN_12330 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_12350 PF02397 Bacterial sugar transferase MM35RIKEN_12360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MM35RIKEN_12370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MM35RIKEN_12380 PF02673 Bacitracin resistance protein BacA MM35RIKEN_12390 PF09397 Ftsk gamma domain MM35RIKEN_12390 PF01580 FtsK/SpoIIIE family MM35RIKEN_12390 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MM35RIKEN_12390 PF17854 FtsK alpha domain MM35RIKEN_12400 PF02645 Uncharacterised protein, DegV family COG1307 MM35RIKEN_12440 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MM35RIKEN_12440 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MM35RIKEN_12460 PF00464 Serine hydroxymethyltransferase MM35RIKEN_12510 PF02661 Fic/DOC family MM35RIKEN_12680 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_12690 PF05713 Bacterial mobilisation protein (MobC) MM35RIKEN_12730 PF02195 ParB-like nuclease domain MM35RIKEN_12730 PF17762 HTH domain found in ParB protein MM35RIKEN_12830 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal MM35RIKEN_12830 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal MM35RIKEN_12840 PF00378 Enoyl-CoA hydratase/isomerase MM35RIKEN_12850 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MM35RIKEN_12850 PF10371 Domain of unknown function MM35RIKEN_12850 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_12850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MM35RIKEN_12850 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MM35RIKEN_12860 PF03328 HpcH/HpaI aldolase/citrate lyase family MM35RIKEN_12890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MM35RIKEN_12890 PF00005 ABC transporter MM35RIKEN_12900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MM35RIKEN_12900 PF00005 ABC transporter MM35RIKEN_12910 PF12911 N-terminal TM domain of oligopeptide transport permease C MM35RIKEN_12910 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_12920 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_12930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MM35RIKEN_12940 PF00294 pfkB family carbohydrate kinase MM35RIKEN_12970 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MM35RIKEN_12970 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MM35RIKEN_13020 PF01042 Endoribonuclease L-PSP MM35RIKEN_13030 PF00892 EamA-like transporter family MM35RIKEN_13040 PF00892 EamA-like transporter family MM35RIKEN_13060 PF07722 Peptidase C26 MM35RIKEN_13080 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_13080 PF00589 Phage integrase family MM35RIKEN_13090 PF02195 ParB-like nuclease domain MM35RIKEN_13090 PF17762 HTH domain found in ParB protein MM35RIKEN_13180 PF00145 C-5 cytosine-specific DNA methylase MM35RIKEN_13190 PF00145 C-5 cytosine-specific DNA methylase MM35RIKEN_13290 PF00589 Phage integrase family MM35RIKEN_13290 PF02899 Phage integrase, N-terminal SAM-like domain MM35RIKEN_13360 PF00535 Glycosyl transferase family 2 MM35RIKEN_13430 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_13430 PF00072 Response regulator receiver domain MM35RIKEN_13440 PF18719 ArlS sensor domain MM35RIKEN_13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_13440 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_13480 PF01895 PhoU domain MM35RIKEN_13490 PF00005 ABC transporter MM35RIKEN_13500 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_13510 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_13520 PF12849 PBP superfamily domain MM35RIKEN_13530 PF05437 Branched-chain amino acid transport protein (AzlD) MM35RIKEN_13540 PF03591 AzlC protein MM35RIKEN_13550 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_13570 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MM35RIKEN_13570 PF01676 Metalloenzyme superfamily MM35RIKEN_13580 PF00121 Triosephosphate isomerase MM35RIKEN_13590 PF00162 Phosphoglycerate kinase MM35RIKEN_13600 PF00588 SpoU rRNA Methylase family MM35RIKEN_13610 PF14572 Phosphoribosyl synthetase-associated domain MM35RIKEN_13610 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MM35RIKEN_13620 PF01195 Peptidyl-tRNA hydrolase MM35RIKEN_13630 PF00271 Helicase conserved C-terminal domain MM35RIKEN_13630 PF00270 DEAD/DEAH box helicase MM35RIKEN_13630 PF02559 CarD-like/TRCF domain MM35RIKEN_13630 PF17757 UvrB interaction domain MM35RIKEN_13630 PF03461 TRCF domain MM35RIKEN_13650 PF02803 Thiolase, C-terminal domain MM35RIKEN_13650 PF00108 Thiolase, N-terminal domain MM35RIKEN_13680 PF01118 Semialdehyde dehydrogenase, NAD binding domain MM35RIKEN_13680 PF02774 Semialdehyde dehydrogenase, dimerisation domain MM35RIKEN_13690 PF00696 Amino acid kinase family MM35RIKEN_13690 PF13840 ACT domain MM35RIKEN_13700 PF00291 Pyridoxal-phosphate dependent enzyme MM35RIKEN_13700 PF14821 Threonine synthase N terminus MM35RIKEN_13710 PF08544 GHMP kinases C terminal MM35RIKEN_13710 PF00288 GHMP kinases N terminal domain MM35RIKEN_13740 PF04227 Indigoidine synthase A like protein MM35RIKEN_13750 PF00294 pfkB family carbohydrate kinase MM35RIKEN_13760 PF01336 OB-fold nucleic acid binding domain MM35RIKEN_13760 PF00152 tRNA synthetases class II (D, K and N) MM35RIKEN_13780 PF00501 AMP-binding enzyme MM35RIKEN_13780 PF13193 AMP-binding enzyme C-terminal domain MM35RIKEN_13800 PF00085 Thioredoxin MM35RIKEN_13810 PF00742 Homoserine dehydrogenase MM35RIKEN_13810 PF03447 Homoserine dehydrogenase, NAD binding domain MM35RIKEN_13810 PF01842 ACT domain MM35RIKEN_13830 PF04607 Region found in RelA / SpoT proteins MM35RIKEN_13840 PF00072 Response regulator receiver domain MM35RIKEN_13840 PF08769 Sporulation initiation factor Spo0A C terminal MM35RIKEN_13850 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_13850 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MM35RIKEN_13850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MM35RIKEN_13860 PF02906 Iron only hydrogenase large subunit, C-terminal domain MM35RIKEN_13860 PF02256 Iron hydrogenase small subunit MM35RIKEN_13860 PF00037 4Fe-4S binding domain MM35RIKEN_13860 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MM35RIKEN_13880 PF00005 ABC transporter MM35RIKEN_13900 PF00814 Glycoprotease family MM35RIKEN_13910 PF00583 Acetyltransferase (GNAT) family MM35RIKEN_13920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MM35RIKEN_13920 PF00476 DNA polymerase family A MM35RIKEN_13920 PF01367 5'-3' exonuclease, C-terminal SAM fold MM35RIKEN_13960 PF01098 Cell cycle protein MM35RIKEN_13970 PF00905 Penicillin binding protein transpeptidase domain MM35RIKEN_13990 PF09515 Thiamine transporter protein (Thia_YuaJ) MM35RIKEN_14000 PF01880 Desulfoferrodoxin MM35RIKEN_14000 PF06397 Desulfoferrodoxin, N-terminal domain MM35RIKEN_14010 PF02915 Rubrerythrin MM35RIKEN_14030 PF02001 Protein of unknown function DUF134 MM35RIKEN_14050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MM35RIKEN_14060 PF01668 SmpB protein MM35RIKEN_14070 PF18152 DAHP synthase ferredoxin-like domain MM35RIKEN_14070 PF00793 DAHP synthetase I family MM35RIKEN_14080 PF01761 3-dehydroquinate synthase MM35RIKEN_14090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MM35RIKEN_14100 PF01264 Chorismate synthase MM35RIKEN_14110 PF01842 ACT domain MM35RIKEN_14110 PF01817 Chorismate mutase type II MM35RIKEN_14110 PF00800 Prephenate dehydratase MM35RIKEN_14120 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MM35RIKEN_14120 PF01488 Shikimate / quinate 5-dehydrogenase MM35RIKEN_14120 PF08501 Shikimate dehydrogenase substrate binding domain MM35RIKEN_14130 PF01220 Dehydroquinase class II MM35RIKEN_14140 PF02386 Cation transport protein MM35RIKEN_14150 PF08497 Radical SAM N-terminal MM35RIKEN_14150 PF04055 Radical SAM superfamily MM35RIKEN_14150 PF11842 Domain of unknown function (DUF3362) MM35RIKEN_14190 PF05525 Branched-chain amino acid transport protein MM35RIKEN_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_14200 PF03466 LysR substrate binding domain MM35RIKEN_14220 PF13186 Iron-sulfur cluster-binding domain MM35RIKEN_14220 PF04055 Radical SAM superfamily MM35RIKEN_14230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MM35RIKEN_14230 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus MM35RIKEN_14240 PF00465 Iron-containing alcohol dehydrogenase MM35RIKEN_14260 PF01979 Amidohydrolase family MM35RIKEN_14290 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_14300 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_14320 PF00005 ABC transporter MM35RIKEN_14390 PF01381 Helix-turn-helix MM35RIKEN_14410 PF02486 Replication initiation factor MM35RIKEN_14410 PF18106 Rolling Circle replication initiation protein N-terminal domain MM35RIKEN_14530 PF00877 NlpC/P60 family MM35RIKEN_14540 PF00877 NlpC/P60 family MM35RIKEN_14660 PF04539 Sigma-70 region 3 MM35RIKEN_14660 PF04545 Sigma-70, region 4 MM35RIKEN_14660 PF04542 Sigma-70 region 2 MM35RIKEN_14660 PF00140 Sigma-70 factor, region 1.2 MM35RIKEN_14710 PF00589 Phage integrase family MM35RIKEN_14710 PF02899 Phage integrase, N-terminal SAM-like domain MM35RIKEN_14730 PF00324 Amino acid permease MM35RIKEN_14740 PF00465 Iron-containing alcohol dehydrogenase MM35RIKEN_14750 PF00266 Aminotransferase class-V MM35RIKEN_14790 PF10609 NUBPL iron-transfer P-loop NTPase MM35RIKEN_14830 PF02915 Rubrerythrin MM35RIKEN_14840 PF00679 Elongation factor G C-terminus MM35RIKEN_14840 PF14492 Elongation Factor G, domain II MM35RIKEN_14840 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_14840 PF03764 Elongation factor G, domain IV MM35RIKEN_14840 PF03144 Elongation factor Tu domain 2 MM35RIKEN_14850 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MM35RIKEN_14870 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family MM35RIKEN_14890 PF06969 HemN C-terminal domain MM35RIKEN_14890 PF04055 Radical SAM superfamily MM35RIKEN_14930 PF00265 Thymidine kinase MM35RIKEN_14940 PF00730 HhH-GPD superfamily base excision DNA repair protein MM35RIKEN_14940 PF14815 NUDIX domain MM35RIKEN_14970 PF02502 Ribose/Galactose Isomerase MM35RIKEN_14980 PF02811 PHP domain MM35RIKEN_14990 PF00226 DnaJ domain MM35RIKEN_14990 PF01556 DnaJ C terminal domain MM35RIKEN_14990 PF00684 DnaJ central domain MM35RIKEN_15000 PF00012 Hsp70 protein MM35RIKEN_15010 PF01025 GrpE MM35RIKEN_15020 PF01628 HrcA protein C terminal domain MM35RIKEN_15020 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MM35RIKEN_15030 PF02080 TrkA-C domain MM35RIKEN_15030 PF02254 TrkA-N domain MM35RIKEN_15040 PF02386 Cation transport protein MM35RIKEN_15050 PF01554 MatE MM35RIKEN_15060 PF06480 FtsH Extracellular MM35RIKEN_15060 PF17862 AAA+ lid domain MM35RIKEN_15060 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_15060 PF01434 Peptidase family M41 MM35RIKEN_15070 PF08032 RNA 2'-O ribose methyltransferase substrate binding MM35RIKEN_15070 PF00588 SpoU rRNA Methylase family MM35RIKEN_15100 PF00118 TCP-1/cpn60 chaperonin family MM35RIKEN_15110 PF00166 Chaperonin 10 Kd subunit MM35RIKEN_15120 PF00781 Diacylglycerol kinase catalytic domain MM35RIKEN_15130 PF02926 THUMP domain MM35RIKEN_15130 PF01170 Putative RNA methylase family UPF0020 MM35RIKEN_15140 PF01381 Helix-turn-helix MM35RIKEN_15150 PF01145 SPFH domain / Band 7 family MM35RIKEN_15170 PF01906 Putative heavy-metal-binding MM35RIKEN_15180 PF03313 Serine dehydratase alpha chain MM35RIKEN_15210 PF13375 RnfC Barrel sandwich hybrid domain MM35RIKEN_15210 PF13237 4Fe-4S dicluster domain MM35RIKEN_15210 PF10531 SLBB domain MM35RIKEN_15210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MM35RIKEN_15220 PF03116 NQR2, RnfD, RnfE family MM35RIKEN_15230 PF04205 FMN-binding domain MM35RIKEN_15240 PF02508 Rnf-Nqr subunit, membrane protein MM35RIKEN_15250 PF02508 Rnf-Nqr subunit, membrane protein MM35RIKEN_15260 PF00037 4Fe-4S binding domain MM35RIKEN_15260 PF13187 4Fe-4S dicluster domain MM35RIKEN_15260 PF04060 Putative Fe-S cluster MM35RIKEN_15360 PF00005 ABC transporter MM35RIKEN_15380 PF00571 CBS domain MM35RIKEN_15380 PF03471 Transporter associated domain MM35RIKEN_15380 PF01595 Cyclin M transmembrane N-terminal domain MM35RIKEN_15390 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_15400 PF00005 ABC transporter MM35RIKEN_15400 PF09383 NIL domain MM35RIKEN_15410 PF03180 NLPA lipoprotein MM35RIKEN_15430 PF01168 Alanine racemase, N-terminal domain MM35RIKEN_15450 PF03553 Na+/H+ antiporter family MM35RIKEN_15460 PF03553 Na+/H+ antiporter family MM35RIKEN_15470 PF00209 Sodium:neurotransmitter symporter family MM35RIKEN_15480 PF00072 Response regulator receiver domain MM35RIKEN_15480 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_15490 PF02702 Osmosensitive K+ channel His kinase sensor domain MM35RIKEN_15490 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_15490 PF13493 Domain of unknown function (DUF4118) MM35RIKEN_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_15500 PF01266 FAD dependent oxidoreductase MM35RIKEN_15510 PF04324 BFD-like [2Fe-2S] binding domain MM35RIKEN_15510 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_15550 PF01134 Glucose inhibited division protein A MM35RIKEN_15550 PF13932 GidA associated domain MM35RIKEN_15580 PF08245 Mur ligase middle domain MM35RIKEN_15580 PF08353 Domain of unknown function (DUF1727) MM35RIKEN_15600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MM35RIKEN_15600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MM35RIKEN_15620 PF01048 Phosphorylase superfamily MM35RIKEN_15640 PF00209 Sodium:neurotransmitter symporter family MM35RIKEN_15650 PF03061 Thioesterase superfamily MM35RIKEN_15660 PF01594 AI-2E family transporter MM35RIKEN_15670 PF00781 Diacylglycerol kinase catalytic domain MM35RIKEN_15690 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment MM35RIKEN_15690 PF01297 Zinc-uptake complex component A periplasmic MM35RIKEN_15700 PF00005 ABC transporter MM35RIKEN_15710 PF00950 ABC 3 transport family MM35RIKEN_15730 PF01434 Peptidase family M41 MM35RIKEN_15730 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_15730 PF17862 AAA+ lid domain MM35RIKEN_15730 PF06480 FtsH Extracellular MM35RIKEN_15770 PF00204 DNA gyrase B MM35RIKEN_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_15770 PF00986 DNA gyrase B subunit, carboxyl terminus MM35RIKEN_15770 PF01751 Toprim domain MM35RIKEN_15790 PF03989 DNA gyrase C-terminal domain, beta-propeller MM35RIKEN_15790 PF00521 DNA gyrase/topoisomerase IV, subunit A MM35RIKEN_15830 PF02397 Bacterial sugar transferase MM35RIKEN_15850 PF05958 tRNA (Uracil-5-)-methyltransferase MM35RIKEN_15850 PF01938 TRAM domain MM35RIKEN_15860 PF10996 Beta-Casp domain MM35RIKEN_15860 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_15860 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MM35RIKEN_15880 PF01368 DHH family MM35RIKEN_15880 PF02272 DHHA1 domain MM35RIKEN_15880 PF17768 RecJ OB domain MM35RIKEN_15880 PF10141 Single-strand DNA-specific exonuclease, C terminal domain MM35RIKEN_15890 PF13291 ACT domain MM35RIKEN_15890 PF04607 Region found in RelA / SpoT proteins MM35RIKEN_15890 PF02824 TGS domain MM35RIKEN_15900 PF02580 D-Tyr-tRNA(Tyr) deacylase MM35RIKEN_15910 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_15920 PF04055 Radical SAM superfamily MM35RIKEN_15930 PF14667 Polysaccharide biosynthesis C-terminal domain MM35RIKEN_15930 PF01943 Polysaccharide biosynthesis protein MM35RIKEN_15940 PF03819 MazG nucleotide pyrophosphohydrolase domain MM35RIKEN_15950 PF00216 Bacterial DNA-binding protein MM35RIKEN_15960 PF01479 S4 domain MM35RIKEN_16000 PF00575 S1 RNA binding domain MM35RIKEN_16010 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_16020 PF08543 Phosphomethylpyrimidine kinase MM35RIKEN_16040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MM35RIKEN_16040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MM35RIKEN_16090 PF01252 Signal peptidase (SPase) II MM35RIKEN_16100 PF00849 RNA pseudouridylate synthase MM35RIKEN_16100 PF01479 S4 domain MM35RIKEN_16110 PF02082 Transcriptional regulator MM35RIKEN_16120 PF01592 NifU-like N terminal domain MM35RIKEN_16130 PF00266 Aminotransferase class-V MM35RIKEN_16150 PF01594 AI-2E family transporter MM35RIKEN_16160 PF10437 Bacterial lipoate protein ligase C-terminus MM35RIKEN_16160 PF03099 Biotin/lipoate A/B protein ligase family MM35RIKEN_16170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MM35RIKEN_16170 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_16180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MM35RIKEN_16180 PF00364 Biotin-requiring enzyme MM35RIKEN_16180 PF02817 e3 binding domain MM35RIKEN_16190 PF02779 Transketolase, pyrimidine binding domain MM35RIKEN_16190 PF02780 Transketolase, C-terminal domain MM35RIKEN_16200 PF00676 Dehydrogenase E1 component MM35RIKEN_16230 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MM35RIKEN_16230 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MM35RIKEN_16240 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MM35RIKEN_16260 PF03480 Bacterial extracellular solute-binding protein, family 7 MM35RIKEN_16270 PF07729 FCD domain MM35RIKEN_16270 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_16420 PF00436 Single-strand binding protein family MM35RIKEN_16450 PF01695 IstB-like ATP binding protein MM35RIKEN_16530 PF06725 3D domain MM35RIKEN_16530 PF01476 LysM domain MM35RIKEN_16640 PF02195 ParB-like nuclease domain MM35RIKEN_16650 PF01555 DNA methylase MM35RIKEN_16800 PF08000 Bacterial PH domain MM35RIKEN_16980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MM35RIKEN_16980 PF00056 lactate/malate dehydrogenase, NAD binding domain MM35RIKEN_16990 PF04055 Radical SAM superfamily MM35RIKEN_16990 PF01938 TRAM domain MM35RIKEN_16990 PF00919 Uncharacterized protein family UPF0004 MM35RIKEN_17000 PF01119 DNA mismatch repair protein, C-terminal domain MM35RIKEN_17000 PF08676 MutL C terminal dimerisation domain MM35RIKEN_17010 PF05188 MutS domain II MM35RIKEN_17010 PF01624 MutS domain I MM35RIKEN_17010 PF05192 MutS domain III MM35RIKEN_17010 PF05190 MutS family domain IV MM35RIKEN_17010 PF00488 MutS domain V MM35RIKEN_17030 PF17209 Hfq protein MM35RIKEN_17050 PF01168 Alanine racemase, N-terminal domain MM35RIKEN_17060 PF04472 Cell division protein SepF MM35RIKEN_17090 PF00480 ROK family MM35RIKEN_17100 PF00391 PEP-utilising enzyme, mobile domain MM35RIKEN_17100 PF02896 PEP-utilising enzyme, TIM barrel domain MM35RIKEN_17100 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MM35RIKEN_17120 PF04468 PSP1 C-terminal conserved region MM35RIKEN_17140 PF00871 Acetokinase family MM35RIKEN_17150 PF01327 Polypeptide deformylase MM35RIKEN_17190 PF06421 GTP-binding protein LepA C-terminus MM35RIKEN_17190 PF03144 Elongation factor Tu domain 2 MM35RIKEN_17190 PF00679 Elongation factor G C-terminus MM35RIKEN_17190 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_17230 PF09334 tRNA synthetases class I (M) MM35RIKEN_17230 PF01588 Putative tRNA binding domain MM35RIKEN_17250 PF03372 Endonuclease/Exonuclease/phosphatase family MM35RIKEN_17270 PF01026 TatD related DNase MM35RIKEN_17280 PF01424 R3H domain MM35RIKEN_17280 PF14804 Jag N-terminus MM35RIKEN_17290 PF14849 YidC periplasmic domain MM35RIKEN_17290 PF02096 60Kd inner membrane protein MM35RIKEN_17300 PF01809 Putative membrane protein insertion efficiency factor MM35RIKEN_17310 PF00825 Ribonuclease P MM35RIKEN_17320 PF00468 Ribosomal protein L34 MM35RIKEN_17330 PF00308 Bacterial dnaA protein MM35RIKEN_17330 PF08299 Bacterial dnaA protein helix-turn-helix MM35RIKEN_17330 PF11638 DnaA N-terminal domain MM35RIKEN_17340 PF02768 DNA polymerase III beta subunit, C-terminal domain MM35RIKEN_17340 PF02767 DNA polymerase III beta subunit, central domain MM35RIKEN_17340 PF00712 DNA polymerase III beta subunit, N-terminal domain MM35RIKEN_17360 PF02463 RecF/RecN/SMC N terminal domain MM35RIKEN_17380 PF00204 DNA gyrase B MM35RIKEN_17380 PF00986 DNA gyrase B subunit, carboxyl terminus MM35RIKEN_17380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_17380 PF01751 Toprim domain MM35RIKEN_17390 PF03989 DNA gyrase C-terminal domain, beta-propeller MM35RIKEN_17390 PF00521 DNA gyrase/topoisomerase IV, subunit A MM35RIKEN_17400 PF01980 tRNA-methyltransferase O MM35RIKEN_17400 PF18389 TrmO C-terminal domain MM35RIKEN_17410 PF00075 RNase H MM35RIKEN_17420 PF00795 Carbon-nitrogen hydrolase MM35RIKEN_17420 PF02540 NAD synthase MM35RIKEN_17430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_17430 PF03466 LysR substrate binding domain MM35RIKEN_17440 PF01554 MatE MM35RIKEN_17450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MM35RIKEN_17450 PF01411 tRNA synthetases class II (A) MM35RIKEN_17450 PF02272 DHHA1 domain MM35RIKEN_17460 PF02938 GAD domain MM35RIKEN_17460 PF00152 tRNA synthetases class II (D, K and N) MM35RIKEN_17460 PF01336 OB-fold nucleic acid binding domain MM35RIKEN_17470 PF03129 Anticodon binding domain MM35RIKEN_17470 PF13393 Histidyl-tRNA synthetase MM35RIKEN_17480 PF02142 MGS-like domain MM35RIKEN_17490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MM35RIKEN_17500 PF02527 rRNA small subunit methyltransferase G MM35RIKEN_17510 PF01741 Large-conductance mechanosensitive channel, MscL MM35RIKEN_17520 PF02403 Seryl-tRNA synthetase N-terminal domain MM35RIKEN_17520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MM35RIKEN_17530 PF17762 HTH domain found in ParB protein MM35RIKEN_17530 PF02195 ParB-like nuclease domain MM35RIKEN_17540 PF13614 AAA domain MM35RIKEN_17550 PF00128 Alpha amylase, catalytic domain MM35RIKEN_17550 PF02903 Alpha amylase, N-terminal ig-like domain MM35RIKEN_17560 PF03717 Penicillin-binding Protein dimerisation domain MM35RIKEN_17560 PF00905 Penicillin binding protein transpeptidase domain MM35RIKEN_17580 PF04085 rod shape-determining protein MreC MM35RIKEN_17590 PF02545 Maf-like protein MM35RIKEN_17600 PF00692 dUTPase MM35RIKEN_17610 PF01136 Peptidase family U32 MM35RIKEN_17620 PF05164 Cell division protein ZapA MM35RIKEN_17650 PF12631 MnmE helical domain MM35RIKEN_17650 PF01926 50S ribosome-binding GTPase MM35RIKEN_17650 PF10396 GTP-binding protein TrmE N-terminus MM35RIKEN_17660 PF02645 Uncharacterised protein, DegV family COG1307 MM35RIKEN_17700 PF17762 HTH domain found in ParB protein MM35RIKEN_17700 PF02195 ParB-like nuclease domain MM35RIKEN_17730 PF03129 Anticodon binding domain MM35RIKEN_17730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MM35RIKEN_17750 PF01649 Ribosomal protein S20 MM35RIKEN_17760 PF03418 Germination protease MM35RIKEN_17790 PF03725 3' exoribonuclease family, domain 2 MM35RIKEN_17790 PF00575 S1 RNA binding domain MM35RIKEN_17790 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MM35RIKEN_17790 PF00013 KH domain MM35RIKEN_17790 PF01138 3' exoribonuclease family, domain 1 MM35RIKEN_17800 PF00312 Ribosomal protein S15 MM35RIKEN_17820 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_17830 PF00005 ABC transporter MM35RIKEN_17850 PF00571 CBS domain MM35RIKEN_17850 PF01368 DHH family MM35RIKEN_17850 PF02833 DHHA2 domain MM35RIKEN_17850 PF07085 DRTGG domain MM35RIKEN_17890 PF00209 Sodium:neurotransmitter symporter family MM35RIKEN_17900 PF00809 Pterin binding enzyme MM35RIKEN_17900 PF02574 Homocysteine S-methyltransferase MM35RIKEN_17900 PF02607 B12 binding domain MM35RIKEN_17900 PF02965 Vitamin B12 dependent methionine synthase, activation domain MM35RIKEN_17900 PF02310 B12 binding domain MM35RIKEN_17920 PF02310 B12 binding domain MM35RIKEN_17920 PF02607 B12 binding domain MM35RIKEN_17930 PF01979 Amidohydrolase family MM35RIKEN_17950 PF01571 Aminomethyltransferase folate-binding domain MM35RIKEN_17950 PF08669 Glycine cleavage T-protein C-terminal barrel domain MM35RIKEN_17960 PF01597 Glycine cleavage H-protein MM35RIKEN_17970 PF02347 Glycine cleavage system P-protein MM35RIKEN_17980 PF02347 Glycine cleavage system P-protein MM35RIKEN_17990 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_17990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MM35RIKEN_18050 PF02595 Glycerate kinase family MM35RIKEN_18080 PF02397 Bacterial sugar transferase MM35RIKEN_18100 PF08264 Anticodon-binding domain of tRNA MM35RIKEN_18100 PF00133 tRNA synthetases class I (I, L, M and V) MM35RIKEN_18100 PF06827 Zinc finger found in FPG and IleRS MM35RIKEN_18120 PF02464 Competence-damaged protein MM35RIKEN_18120 PF18146 Damage-inducible protein CinA KH domain MM35RIKEN_18120 PF00994 Probable molybdopterin binding domain MM35RIKEN_18130 PF02568 Thiamine biosynthesis protein (ThiI) MM35RIKEN_18130 PF02926 THUMP domain MM35RIKEN_18140 PF01078 Magnesium chelatase, subunit ChlI MM35RIKEN_18140 PF13335 Magnesium chelatase, subunit ChlI C-terminal MM35RIKEN_18150 PF10371 Domain of unknown function MM35RIKEN_18150 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MM35RIKEN_18150 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MM35RIKEN_18150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MM35RIKEN_18150 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MM35RIKEN_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MM35RIKEN_18160 PF03466 LysR substrate binding domain MM35RIKEN_18200 PF00860 Permease family MM35RIKEN_18210 PF08459 UvrC Helix-hairpin-helix N-terminal MM35RIKEN_18210 PF02151 UvrB/uvrC motif MM35RIKEN_18210 PF01541 GIY-YIG catalytic domain MM35RIKEN_18220 PF00270 DEAD/DEAH box helicase MM35RIKEN_18220 PF17191 RecG wedge domain MM35RIKEN_18220 PF00271 Helicase conserved C-terminal domain MM35RIKEN_18230 PF01638 HxlR-like helix-turn-helix MM35RIKEN_18240 PF01810 LysE type translocator MM35RIKEN_18250 PF01416 tRNA pseudouridine synthase MM35RIKEN_18260 PF00704 Glycosyl hydrolases family 18 MM35RIKEN_18260 PF01476 LysM domain MM35RIKEN_18270 PF02421 Ferrous iron transport protein B MM35RIKEN_18270 PF07670 Nucleoside recognition MM35RIKEN_18270 PF17910 FeoB cytosolic helical domain MM35RIKEN_18270 PF07664 Ferrous iron transport protein B C terminus MM35RIKEN_18310 PF02562 PhoH-like protein MM35RIKEN_18320 PF02130 Uncharacterized protein family UPF0054 MM35RIKEN_18350 PF07650 KH domain MM35RIKEN_18350 PF01926 50S ribosome-binding GTPase MM35RIKEN_18370 PF02565 Recombination protein O C terminal MM35RIKEN_18370 PF11967 Recombination protein O N terminal MM35RIKEN_18390 PF00488 MutS domain V MM35RIKEN_18390 PF01713 Smr domain MM35RIKEN_18400 PF00381 PTS HPr component phosphorylation site MM35RIKEN_18410 PF17384 RimP C-terminal SH3 domain MM35RIKEN_18410 PF02576 RimP N-terminal domain MM35RIKEN_18420 PF00575 S1 RNA binding domain MM35RIKEN_18420 PF08529 NusA N-terminal domain MM35RIKEN_18420 PF13184 NusA-like KH domain MM35RIKEN_18430 PF04296 Protein of unknown function (DUF448) MM35RIKEN_18450 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_18450 PF04760 Translation initiation factor IF-2, N-terminal region MM35RIKEN_18450 PF11987 Translation-initiation factor 2 MM35RIKEN_18460 PF02033 Ribosome-binding factor A MM35RIKEN_18480 PF09142 tRNA Pseudouridine synthase II, C terminal MM35RIKEN_18480 PF16198 tRNA pseudouridylate synthase B C-terminal domain MM35RIKEN_18480 PF01509 TruB family pseudouridylate synthase (N terminal domain) MM35RIKEN_18490 PF09157 Pseudouridine synthase II TruB, C-terminal MM35RIKEN_18490 PF16198 tRNA pseudouridylate synthase B C-terminal domain MM35RIKEN_18490 PF01509 TruB family pseudouridylate synthase (N terminal domain) MM35RIKEN_18500 PF06574 FAD synthetase MM35RIKEN_18500 PF01687 Riboflavin kinase MM35RIKEN_18540 PF01207 Dihydrouridine synthase (Dus) MM35RIKEN_18560 PF00005 ABC transporter MM35RIKEN_18560 PF00664 ABC transporter transmembrane region MM35RIKEN_18570 PF00005 ABC transporter MM35RIKEN_18570 PF00664 ABC transporter transmembrane region MM35RIKEN_18580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MM35RIKEN_18610 PF01250 Ribosomal protein S6 MM35RIKEN_18620 PF00436 Single-strand binding protein family MM35RIKEN_18630 PF01084 Ribosomal protein S18 MM35RIKEN_18640 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_18640 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MM35RIKEN_18640 PF17770 Ribonuclease J C-terminal domain MM35RIKEN_18650 PF01368 DHH family MM35RIKEN_18650 PF02272 DHHA1 domain MM35RIKEN_18660 PF01281 Ribosomal protein L9, N-terminal domain MM35RIKEN_18660 PF03948 Ribosomal protein L9, C-terminal domain MM35RIKEN_18670 PF00772 DnaB-like helicase N terminal domain MM35RIKEN_18670 PF03796 DnaB-like helicase C terminal domain MM35RIKEN_18680 PF11734 TilS substrate C-terminal domain MM35RIKEN_18680 PF01171 PP-loop family MM35RIKEN_18690 PF00156 Phosphoribosyl transferase domain MM35RIKEN_18700 PF10502 Signal peptidase, peptidase S26 MM35RIKEN_18710 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_18710 PF17862 AAA+ lid domain MM35RIKEN_18710 PF06480 FtsH Extracellular MM35RIKEN_18710 PF01434 Peptidase family M41 MM35RIKEN_18730 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_18740 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_18740 PF11862 Domain of unknown function (DUF3382) MM35RIKEN_18750 PF00005 ABC transporter MM35RIKEN_18750 PF12399 Branched-chain amino acid ATP-binding cassette transporter MM35RIKEN_18760 PF00005 ABC transporter MM35RIKEN_18770 PF07724 AAA domain (Cdc48 subfamily) MM35RIKEN_18770 PF17871 AAA lid domain MM35RIKEN_18770 PF02861 Clp amino terminal domain, pathogenicity island component MM35RIKEN_18770 PF10431 C-terminal, D2-small domain, of ClpB protein MM35RIKEN_18770 PF00004 ATPase family associated with various cellular activities (AAA) MM35RIKEN_18790 PF17727 CtsR C-terminal dimerization domain MM35RIKEN_18790 PF05848 CtsR N-terminal HTH domain MM35RIKEN_18800 PF12838 4Fe-4S dicluster domain MM35RIKEN_18810 PF05175 Methyltransferase small domain MM35RIKEN_18820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MM35RIKEN_18830 PF18277 AbrB C-terminal domain MM35RIKEN_18830 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MM35RIKEN_18840 PF07670 Nucleoside recognition MM35RIKEN_18850 PF07670 Nucleoside recognition MM35RIKEN_18860 PF03485 Arginyl tRNA synthetase N terminal domain MM35RIKEN_18860 PF00750 tRNA synthetases class I (R) MM35RIKEN_18860 PF05746 DALR anticodon binding domain MM35RIKEN_18880 PF01177 Asp/Glu/Hydantoin racemase MM35RIKEN_18900 PF10672 S-adenosylmethionine-dependent methyltransferase MM35RIKEN_18900 PF17785 PUA-like domain MM35RIKEN_18920 PF01966 HD domain MM35RIKEN_18920 PF00013 KH domain MM35RIKEN_18920 PF12072 Domain of unknown function (DUF3552) MM35RIKEN_18930 PF13277 YmdB-like protein MM35RIKEN_18940 PF04073 Aminoacyl-tRNA editing domain MM35RIKEN_18950 PF00149 Calcineurin-like phosphoesterase MM35RIKEN_18960 PF00710 Asparaginase, N-terminal MM35RIKEN_18960 PF17763 Glutaminase/Asparaginase C-terminal domain MM35RIKEN_18970 PF03129 Anticodon binding domain MM35RIKEN_18970 PF09180 Prolyl-tRNA synthetase, C-terminal MM35RIKEN_18970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MM35RIKEN_18990 PF00338 Ribosomal protein S10p/S20e MM35RIKEN_19000 PF00297 Ribosomal protein L3 MM35RIKEN_19010 PF00573 Ribosomal protein L4/L1 family MM35RIKEN_19020 PF00276 Ribosomal protein L23 MM35RIKEN_19030 PF00181 Ribosomal Proteins L2, RNA binding domain MM35RIKEN_19030 PF03947 Ribosomal Proteins L2, C-terminal domain MM35RIKEN_19040 PF00203 Ribosomal protein S19 MM35RIKEN_19050 PF00237 Ribosomal protein L22p/L17e MM35RIKEN_19060 PF07650 KH domain MM35RIKEN_19060 PF00189 Ribosomal protein S3, C-terminal domain MM35RIKEN_19070 PF00252 Ribosomal protein L16p/L10e MM35RIKEN_19080 PF00831 Ribosomal L29 protein MM35RIKEN_19090 PF00366 Ribosomal protein S17 MM35RIKEN_19100 PF00238 Ribosomal protein L14p/L23e MM35RIKEN_19110 PF00467 KOW motif MM35RIKEN_19110 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MM35RIKEN_19120 PF00673 ribosomal L5P family C-terminus MM35RIKEN_19120 PF00281 Ribosomal protein L5 MM35RIKEN_19130 PF00253 Ribosomal protein S14p/S29e MM35RIKEN_19140 PF00410 Ribosomal protein S8 MM35RIKEN_19150 PF00347 Ribosomal protein L6 MM35RIKEN_19160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MM35RIKEN_19170 PF03719 Ribosomal protein S5, C-terminal domain MM35RIKEN_19170 PF00333 Ribosomal protein S5, N-terminal domain MM35RIKEN_19180 PF00327 Ribosomal protein L30p/L7e MM35RIKEN_19190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MM35RIKEN_19200 PF00344 SecY translocase MM35RIKEN_19210 PF05191 Adenylate kinase, active site lid MM35RIKEN_19220 PF00557 Metallopeptidase family M24 MM35RIKEN_19240 PF01176 Translation initiation factor 1A / IF-1 MM35RIKEN_19250 PF00416 Ribosomal protein S13/S18 MM35RIKEN_19260 PF00411 Ribosomal protein S11 MM35RIKEN_19270 PF00163 Ribosomal protein S4/S9 N-terminal domain MM35RIKEN_19270 PF01479 S4 domain MM35RIKEN_19280 PF01000 RNA polymerase Rpb3/RpoA insert domain MM35RIKEN_19280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MM35RIKEN_19280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MM35RIKEN_19290 PF01196 Ribosomal protein L17 MM35RIKEN_19310 PF02277 Phosphoribosyltransferase MM35RIKEN_19330 PF02654 Cobalamin-5-phosphate synthase MM35RIKEN_19350 PF00005 ABC transporter MM35RIKEN_19360 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_19400 PF00209 Sodium:neurotransmitter symporter family MM35RIKEN_19420 PF00072 Response regulator receiver domain MM35RIKEN_19420 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_19430 PF00989 PAS fold MM35RIKEN_19430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_19430 PF16736 Single Cache-like MM35RIKEN_19430 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_19440 PF07136 Protein of unknown function (DUF1385) MM35RIKEN_19450 PF05175 Methyltransferase small domain MM35RIKEN_19450 PF17827 PrmC N-terminal domain MM35RIKEN_19460 PF00154 recA bacterial DNA recombination protein MM35RIKEN_19470 PF02631 RecX family MM35RIKEN_19480 PF04055 Radical SAM superfamily MM35RIKEN_19480 PF18693 TRAM domain MM35RIKEN_19480 PF00919 Uncharacterized protein family UPF0004 MM35RIKEN_19490 PF01066 CDP-alcohol phosphatidyltransferase MM35RIKEN_19500 PF09190 DALR domain MM35RIKEN_19500 PF01406 tRNA synthetases class I (C) catalytic domain MM35RIKEN_19510 PF00892 EamA-like transporter family MM35RIKEN_19520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MM35RIKEN_19520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MM35RIKEN_19540 PF00873 AcrB/AcrD/AcrF family MM35RIKEN_19550 PF04101 Glycosyltransferase family 28 C-terminal domain MM35RIKEN_19550 PF03033 Glycosyltransferase family 28 N-terminal domain MM35RIKEN_19570 PF02645 Uncharacterised protein, DegV family COG1307 MM35RIKEN_19580 PF00072 Response regulator receiver domain MM35RIKEN_19580 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_19590 PF00672 HAMP domain MM35RIKEN_19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_19590 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_19600 PF00497 Bacterial extracellular solute-binding proteins, family 3 MM35RIKEN_19610 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_19620 PF00005 ABC transporter MM35RIKEN_19630 PF05000 RNA polymerase Rpb1, domain 4 MM35RIKEN_19630 PF00623 RNA polymerase Rpb1, domain 2 MM35RIKEN_19630 PF04998 RNA polymerase Rpb1, domain 5 MM35RIKEN_19630 PF04997 RNA polymerase Rpb1, domain 1 MM35RIKEN_19630 PF04983 RNA polymerase Rpb1, domain 3 MM35RIKEN_19640 PF04560 RNA polymerase Rpb2, domain 7 MM35RIKEN_19640 PF04563 RNA polymerase beta subunit MM35RIKEN_19640 PF04561 RNA polymerase Rpb2, domain 2 MM35RIKEN_19640 PF04565 RNA polymerase Rpb2, domain 3 MM35RIKEN_19640 PF10385 RNA polymerase beta subunit external 1 domain MM35RIKEN_19640 PF00562 RNA polymerase Rpb2, domain 6 MM35RIKEN_19650 PF08903 Domain of unknown function (DUF1846) MM35RIKEN_19680 PF01979 Amidohydrolase family MM35RIKEN_19690 PF00293 NUDIX domain MM35RIKEN_19700 PF03062 MBOAT, membrane-bound O-acyltransferase family MM35RIKEN_19740 PF09383 NIL domain MM35RIKEN_19740 PF00005 ABC transporter MM35RIKEN_19750 PF02653 Branched-chain amino acid transport system / permease component MM35RIKEN_19810 PF00342 Phosphoglucose isomerase MM35RIKEN_19820 PF07943 Penicillin-binding protein 5, C-terminal domain MM35RIKEN_19820 PF00768 D-alanyl-D-alanine carboxypeptidase MM35RIKEN_19980 PF17841 BID domain of Bartonella effector protein (Bep) MM35RIKEN_19980 PF03389 MobA/MobL family MM35RIKEN_19980 PF01443 Viral (Superfamily 1) RNA helicase MM35RIKEN_19990 PF10410 DnaB-helicase binding domain of primase MM35RIKEN_19990 PF08278 DNA primase DnaG DnaB-binding MM35RIKEN_19990 PF08275 DNA primase catalytic core, N-terminal domain MM35RIKEN_19990 PF01807 CHC2 zinc finger MM35RIKEN_20070 PF01555 DNA methylase MM35RIKEN_20090 PF01476 LysM domain MM35RIKEN_20090 PF00877 NlpC/P60 family MM35RIKEN_20130 PF01131 DNA topoisomerase MM35RIKEN_20130 PF01751 Toprim domain MM35RIKEN_20150 PF18840 Large polyvalent protein associated domain 25 MM35RIKEN_20220 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_20260 PF13411 MerR HTH family regulatory protein MM35RIKEN_20280 PF13732 Domain of unknown function (DUF4162) MM35RIKEN_20280 PF00005 ABC transporter MM35RIKEN_20370 PF10548 P22AR C-terminal domain MM35RIKEN_20370 PF02498 BRO family, N-terminal domain MM35RIKEN_20490 PF01555 DNA methylase MM35RIKEN_20500 PF00877 NlpC/P60 family MM35RIKEN_20530 PF01131 DNA topoisomerase MM35RIKEN_20530 PF01751 Toprim domain MM35RIKEN_20600 PF09856 Predicted transcriptional regulator (DUF2083) MM35RIKEN_20600 PF01381 Helix-turn-helix MM35RIKEN_20600 PF06114 IrrE N-terminal-like domain MM35RIKEN_20610 PF06908 YspA SLOG family MM35RIKEN_20630 PF06733 DEAD_2 MM35RIKEN_20630 PF13307 Helicase C-terminal domain MM35RIKEN_20660 PF03432 Relaxase/Mobilisation nuclease domain MM35RIKEN_20720 PF00817 impB/mucB/samB family MM35RIKEN_20720 PF11799 impB/mucB/samB family C-terminal domain MM35RIKEN_20720 PF11798 IMS family HHH motif MM35RIKEN_20740 PF01661 Macro domain MM35RIKEN_20770 PF03144 Elongation factor Tu domain 2 MM35RIKEN_20770 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_20770 PF03143 Elongation factor Tu C-terminal domain MM35RIKEN_20850 PF07517 SecA DEAD-like domain MM35RIKEN_20850 PF01043 SecA preprotein cross-linking domain MM35RIKEN_20850 PF07516 SecA Wing and Scaffold domain MM35RIKEN_20850 PF02810 SEC-C motif MM35RIKEN_20890 PF01381 Helix-turn-helix MM35RIKEN_21000 PF01337 Barstar (barnase inhibitor) MM35RIKEN_21010 PF12116 Stage III sporulation protein D MM35RIKEN_21020 PF00186 Dihydrofolate reductase MM35RIKEN_21030 PF00303 Thymidylate synthase MM35RIKEN_21040 PF02875 Mur ligase family, glutamate ligase domain MM35RIKEN_21040 PF08245 Mur ligase middle domain MM35RIKEN_21050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MM35RIKEN_21060 PF02578 Multi-copper polyphenol oxidoreductase laccase MM35RIKEN_21070 PF01043 SecA preprotein cross-linking domain MM35RIKEN_21070 PF07516 SecA Wing and Scaffold domain MM35RIKEN_21070 PF02810 SEC-C motif MM35RIKEN_21070 PF07517 SecA DEAD-like domain MM35RIKEN_21150 PF00380 Ribosomal protein S9/S16 MM35RIKEN_21160 PF00572 Ribosomal protein L13 MM35RIKEN_21170 PF01171 PP-loop family MM35RIKEN_21210 PF14437 MafB19-like deaminase MM35RIKEN_21220 PF08486 Stage II sporulation protein MM35RIKEN_21230 PF00072 Response regulator receiver domain MM35RIKEN_21230 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_21240 PF00989 PAS fold MM35RIKEN_21240 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_21240 PF16736 Single Cache-like MM35RIKEN_21240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_21250 PF13180 PDZ domain MM35RIKEN_21290 PF00571 CBS domain MM35RIKEN_21290 PF03448 MgtE intracellular N domain MM35RIKEN_21290 PF01769 Divalent cation transporter MM35RIKEN_21300 PF12804 MobA-like NTP transferase domain MM35RIKEN_21300 PF00132 Bacterial transferase hexapeptide (six repeats) MM35RIKEN_21320 PF00183 Hsp90 protein MM35RIKEN_21340 PF00164 Ribosomal protein S12/S23 MM35RIKEN_21350 PF00177 Ribosomal protein S7p/S5e MM35RIKEN_21360 PF14492 Elongation Factor G, domain II MM35RIKEN_21360 PF03764 Elongation factor G, domain IV MM35RIKEN_21360 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_21360 PF03144 Elongation factor Tu domain 2 MM35RIKEN_21360 PF00679 Elongation factor G C-terminus MM35RIKEN_21370 PF00009 Elongation factor Tu GTP binding domain MM35RIKEN_21370 PF03144 Elongation factor Tu domain 2 MM35RIKEN_21370 PF03143 Elongation factor Tu C-terminal domain MM35RIKEN_21390 PF01042 Endoribonuclease L-PSP MM35RIKEN_21430 PF05636 HIGH Nucleotidyl Transferase MM35RIKEN_21440 PF01048 Phosphorylase superfamily MM35RIKEN_21450 PF02664 S-Ribosylhomocysteinase (LuxS) MM35RIKEN_21460 PF00829 Ribosomal prokaryotic L21 protein MM35RIKEN_21480 PF01016 Ribosomal L27 protein MM35RIKEN_21500 PF00690 Cation transporter/ATPase, N-terminus MM35RIKEN_21500 PF00689 Cation transporting ATPase, C-terminus MM35RIKEN_21510 PF03167 Uracil DNA glycosylase superfamily MM35RIKEN_21540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MM35RIKEN_21540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MM35RIKEN_21570 PF00849 RNA pseudouridylate synthase MM35RIKEN_21570 PF01479 S4 domain MM35RIKEN_21580 PF17853 GGDEF-like domain MM35RIKEN_21580 PF13556 PucR C-terminal helix-turn-helix domain MM35RIKEN_21580 PF07905 Purine catabolism regulatory protein-like family MM35RIKEN_21600 PF00005 ABC transporter MM35RIKEN_21610 PF02687 FtsX-like permease family MM35RIKEN_21610 PF18075 FtsX extracellular domain MM35RIKEN_21620 PF04225 Opacity-associated protein A LysM-like domain MM35RIKEN_21620 PF01551 Peptidase family M23 MM35RIKEN_21640 PF01272 Transcription elongation factor, GreA/GreB, C-term MM35RIKEN_21640 PF03449 Transcription elongation factor, N-terminal MM35RIKEN_21650 PF00152 tRNA synthetases class II (D, K and N) MM35RIKEN_21650 PF01336 OB-fold nucleic acid binding domain MM35RIKEN_21660 PF01554 MatE MM35RIKEN_21670 PF01554 MatE MM35RIKEN_21690 PF08032 RNA 2'-O ribose methyltransferase substrate binding MM35RIKEN_21690 PF00588 SpoU rRNA Methylase family MM35RIKEN_21700 PF17782 DprA winged helix domain MM35RIKEN_21700 PF02481 DNA recombination-mediator protein A MM35RIKEN_21710 PF01396 Topoisomerase DNA binding C4 zinc finger MM35RIKEN_21710 PF01751 Toprim domain MM35RIKEN_21710 PF01131 DNA topoisomerase MM35RIKEN_21720 PF01134 Glucose inhibited division protein A MM35RIKEN_21730 PF02504 Fatty acid synthesis protein MM35RIKEN_21740 PF00550 Phosphopantetheine attachment site MM35RIKEN_21750 PF00035 Double-stranded RNA binding motif MM35RIKEN_21750 PF14622 Ribonuclease-III-like MM35RIKEN_21770 PF00085 Thioredoxin MM35RIKEN_21780 PF16123 Hydroxyacylglutathione hydrolase C-terminus MM35RIKEN_21780 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_21790 PF13382 Adenine deaminase C-terminal domain MM35RIKEN_21790 PF01979 Amidohydrolase family MM35RIKEN_21800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_21800 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_21810 PF00072 Response regulator receiver domain MM35RIKEN_21810 PF00486 Transcriptional regulatory protein, C terminal MM35RIKEN_21840 PF02492 CobW/HypB/UreG, nucleotide-binding domain MM35RIKEN_21840 PF07683 Cobalamin synthesis protein cobW C-terminal domain MM35RIKEN_21860 PF12169 DNA polymerase III subunits gamma and tau domain III MM35RIKEN_21870 PF02575 YbaB/EbfC DNA-binding family MM35RIKEN_21880 PF01726 LexA DNA binding domain MM35RIKEN_21880 PF00717 Peptidase S24-like MM35RIKEN_21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_21920 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_21930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MM35RIKEN_21930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MM35RIKEN_21940 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_21940 PF07702 UTRA domain MM35RIKEN_21970 PF00005 ABC transporter MM35RIKEN_22160 PF07486 Cell Wall Hydrolase MM35RIKEN_22160 PF01471 Putative peptidoglycan binding domain MM35RIKEN_22170 PF00512 His Kinase A (phospho-acceptor) domain MM35RIKEN_22170 PF01627 Hpt domain MM35RIKEN_22170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MM35RIKEN_22170 PF00072 Response regulator receiver domain MM35RIKEN_22210 PF17674 HHH domain MM35RIKEN_22210 PF00575 S1 RNA binding domain MM35RIKEN_22210 PF09371 Tex-like protein N-terminal domain MM35RIKEN_22210 PF16921 Tex protein YqgF-like domain MM35RIKEN_22220 PF00155 Aminotransferase class I and II MM35RIKEN_22300 PF11798 IMS family HHH motif MM35RIKEN_22300 PF11799 impB/mucB/samB family C-terminal domain MM35RIKEN_22300 PF00817 impB/mucB/samB family MM35RIKEN_22310 PF01638 HxlR-like helix-turn-helix MM35RIKEN_22320 PF01613 Flavin reductase like domain MM35RIKEN_22340 PF03575 Peptidase family S51 MM35RIKEN_22370 PF01047 MarR family MM35RIKEN_22400 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MM35RIKEN_22400 PF15714 Stage V sporulation protein T C-terminal, transcription factor MM35RIKEN_22420 PF02423 Ornithine cyclodeaminase/mu-crystallin family MM35RIKEN_22440 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_22440 PF07729 FCD domain MM35RIKEN_22450 PF00266 Aminotransferase class-V MM35RIKEN_22470 PF04199 Putative cyclase MM35RIKEN_22480 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_22480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MM35RIKEN_22490 PF00155 Aminotransferase class I and II MM35RIKEN_22490 PF00392 Bacterial regulatory proteins, gntR family MM35RIKEN_22520 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MM35RIKEN_22520 PF15714 Stage V sporulation protein T C-terminal, transcription factor MM35RIKEN_22540 PF05816 Toxic anion resistance protein (TelA) MM35RIKEN_22570 PF01070 FMN-dependent dehydrogenase MM35RIKEN_22580 PF00005 ABC transporter MM35RIKEN_22580 PF12399 Branched-chain amino acid ATP-binding cassette transporter MM35RIKEN_22600 PF00474 Sodium:solute symporter family MM35RIKEN_22610 PF00589 Phage integrase family MM35RIKEN_22610 PF02920 DNA binding domain of tn916 integrase MM35RIKEN_22620 PF09035 Excisionase from transposon Tn916 MM35RIKEN_22650 PF01797 Transposase IS200 like MM35RIKEN_22660 PF00398 Ribosomal RNA adenine dimethylase MM35RIKEN_22680 PF00005 ABC transporter MM35RIKEN_22740 PF00877 NlpC/P60 family MM35RIKEN_22870 PF02486 Replication initiation factor MM35RIKEN_22870 PF18106 Rolling Circle replication initiation protein N-terminal domain MM35RIKEN_22980 PF03462 PCRF domain MM35RIKEN_22980 PF00472 RF-1 domain MM35RIKEN_23010 PF02769 AIR synthase related protein, C-terminal domain MM35RIKEN_23010 PF00586 AIR synthase related protein, N-terminal domain MM35RIKEN_23020 PF00485 Phosphoribulokinase / Uridine kinase family MM35RIKEN_23040 PF12791 Anti-sigma factor N-terminus MM35RIKEN_23040 PF00942 Cellulose binding domain MM35RIKEN_23060 PF03601 Conserved hypothetical protein 698 MM35RIKEN_23070 PF03099 Biotin/lipoate A/B protein ligase family MM35RIKEN_23070 PF10437 Bacterial lipoate protein ligase C-terminus MM35RIKEN_23080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MM35RIKEN_23080 PF00364 Biotin-requiring enzyme MM35RIKEN_23080 PF02817 e3 binding domain MM35RIKEN_23090 PF04055 Radical SAM superfamily MM35RIKEN_23100 PF10437 Bacterial lipoate protein ligase C-terminus MM35RIKEN_23100 PF03099 Biotin/lipoate A/B protein ligase family MM35RIKEN_23130 PF00155 Aminotransferase class I and II MM35RIKEN_23140 PF00497 Bacterial extracellular solute-binding proteins, family 3 MM35RIKEN_23150 PF00528 Binding-protein-dependent transport system inner membrane component MM35RIKEN_23160 PF00005 ABC transporter MM35RIKEN_23200 PF02423 Ornithine cyclodeaminase/mu-crystallin family MM35RIKEN_23210 PF00709 Adenylosuccinate synthetase MM35RIKEN_23220 PF10397 Adenylosuccinate lyase C-terminus MM35RIKEN_23220 PF00206 Lyase MM35RIKEN_23310 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer MM35RIKEN_23400 PF04203 Sortase domain MM35RIKEN_23420 PF13635 Domain of unknown function (DUF4143) MM35RIKEN_23420 PF13173 AAA domain MM35RIKEN_23480 PF00436 Single-strand binding protein family MM35RIKEN_23620 PF04607 Region found in RelA / SpoT proteins MM35RIKEN_23630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MM35RIKEN_23630 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_23640 PF00085 Thioredoxin MM35RIKEN_23680 PF00301 Rubredoxin MM35RIKEN_23700 PF06397 Desulfoferrodoxin, N-terminal domain MM35RIKEN_23700 PF01880 Desulfoferrodoxin MM35RIKEN_23710 PF02915 Rubrerythrin MM35RIKEN_23770 PF00005 ABC transporter MM35RIKEN_23790 PF10502 Signal peptidase, peptidase S26 MM35RIKEN_23810 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_23810 PF00589 Phage integrase family MM35RIKEN_23860 PF07581 The GLUG motif MM35RIKEN_23860 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) MM35RIKEN_23910 PF17863 AAA lid domain MM35RIKEN_23910 PF07726 ATPase family associated with various cellular activities (AAA) MM35RIKEN_23980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MM35RIKEN_23980 PF02770 Acyl-CoA dehydrogenase, middle domain MM35RIKEN_23980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MM35RIKEN_23990 PF00258 Flavodoxin MM35RIKEN_23990 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_24010 PF00753 Metallo-beta-lactamase superfamily MM35RIKEN_24010 PF00258 Flavodoxin MM35RIKEN_24040 PF07992 Pyridine nucleotide-disulphide oxidoreductase MM35RIKEN_24050 PF00085 Thioredoxin MM35RIKEN_24080 PF00210 Ferritin-like domain MM35RIKEN_24150 PF03120 NAD-dependent DNA ligase OB-fold domain MM35RIKEN_24150 PF01653 NAD-dependent DNA ligase adenylation domain MM35RIKEN_24150 PF00533 BRCA1 C Terminus (BRCT) domain MM35RIKEN_24150 PF12826 Helix-hairpin-helix motif MM35RIKEN_24170 PF14284 PcfJ-like protein MM35RIKEN_24210 PF13538 UvrD-like helicase C-terminal domain MM35RIKEN_24210 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain MM35RIKEN_24210 PF14490 Helix-hairpin-helix containing domain MM35RIKEN_24240 PF00589 Phage integrase family MM35RIKEN_24240 PF14659 Phage integrase, N-terminal SAM-like domain MM35RIKEN_24250 PF01926 50S ribosome-binding GTPase MM35RIKEN_24250 PF06071 Protein of unknown function (DUF933) MM35RIKEN_24270 PF01032 FecCD transport family MM35RIKEN_24280 PF00005 ABC transporter MM35RIKEN_24290 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus