locus-tag class description VYA_00010 PF00308 Bacterial dnaA protein VYA_00010 PF08299 Bacterial dnaA protein helix-turn-helix VYA_00010 PF11638 DnaA N-terminal domain VYA_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VYA_00020 PF02767 DNA polymerase III beta subunit, central domain VYA_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VYA_00030 PF02463 RecF/RecN/SMC N terminal domain VYA_00040 PF01751 Toprim domain VYA_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_00040 PF18053 DNA gyrase B subunit insert domain VYA_00040 PF00986 DNA gyrase B subunit, carboxyl terminus VYA_00040 PF00204 DNA gyrase B VYA_00050 PF00011 Hsp20/alpha crystallin family VYA_00060 PF00155 Aminotransferase class I and II VYA_00100 PF04972 BON domain VYA_00100 PF00263 Bacterial type II and III secretion system protein VYA_00100 PF13629 Pilus formation protein N terminal region VYA_00130 PF00437 Type II/IV secretion system protein VYA_00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_00220 PF00486 Transcriptional regulatory protein, C terminal VYA_00220 PF00072 Response regulator receiver domain VYA_00230 PF05746 DALR anticodon binding domain VYA_00230 PF02092 Glycyl-tRNA synthetase beta subunit VYA_00240 PF02091 Glycyl-tRNA synthetase alpha subunit VYA_00250 PF01169 Uncharacterized protein family UPF0016 VYA_00270 PF01206 Sulfurtransferase TusA VYA_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_00290 PF03466 LysR substrate binding domain VYA_00300 PF00107 Zinc-binding dehydrogenase VYA_00300 PF08240 Alcohol dehydrogenase GroES-like domain VYA_00310 PF00108 Thiolase, N-terminal domain VYA_00310 PF02803 Thiolase, C-terminal domain VYA_00320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VYA_00320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VYA_00320 PF00378 Enoyl-CoA hydratase/isomerase VYA_00330 PF09186 Domain of unknown function (DUF1949) VYA_00330 PF01205 Uncharacterized protein family UPF0029 VYA_00340 PF02386 Cation transport protein VYA_00350 PF12724 Flavodoxin domain VYA_00360 PF03466 LysR substrate binding domain VYA_00360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_00370 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VYA_00370 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VYA_00380 PF04380 Membrane fusogenic activity VYA_00390 PF00873 AcrB/AcrD/AcrF family VYA_00400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_00410 PF00440 Bacterial regulatory proteins, tetR family VYA_00410 PF08359 YsiA-like protein, C-terminal region VYA_00420 PF00580 UvrD/REP helicase N-terminal domain VYA_00420 PF13361 UvrD-like helicase C-terminal domain VYA_00430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VYA_00450 PF00005 ABC transporter VYA_00450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_00460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_00470 PF00528 Binding-protein-dependent transport system inner membrane component VYA_00480 PF00528 Binding-protein-dependent transport system inner membrane component VYA_00480 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_00540 PF00069 Protein kinase domain VYA_00550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VYA_00550 PF00356 Bacterial regulatory proteins, lacI family VYA_00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_00560 PF03466 LysR substrate binding domain VYA_00570 PF00893 Small Multidrug Resistance protein VYA_00580 PF00893 Small Multidrug Resistance protein VYA_00590 PF00920 Dehydratase family VYA_00600 PF01202 Shikimate kinase VYA_00610 PF02447 GntP family permease VYA_00620 PF01081 KDPG and KHG aldolase VYA_00630 PF01042 Endoribonuclease L-PSP VYA_00640 PF01053 Cys/Met metabolism PLP-dependent enzyme VYA_00650 PF00375 Sodium:dicarboxylate symporter family VYA_00670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VYA_00670 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_00680 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VYA_00690 PF01432 Peptidase family M3 VYA_00700 PF01037 Lrp/AsnC ligand binding domain VYA_00710 PF04445 Putative SAM-dependent methyltransferase VYA_00730 PF00892 EamA-like transporter family VYA_00740 PF00582 Universal stress protein family VYA_00750 PF00210 Ferritin-like domain VYA_00760 PF10625 Universal stress protein B (UspB) VYA_00780 PF00990 Diguanylate cyclase, GGDEF domain VYA_00780 PF00563 EAL domain VYA_00780 PF03707 Bacterial signalling protein N terminal repeat VYA_00800 PF02646 RmuC family VYA_00810 PF01209 ubiE/COQ5 methyltransferase family VYA_00820 PF02036 SCP-2 sterol transfer family VYA_00830 PF03109 ABC1 family VYA_00840 PF02416 mttA/Hcf106 family VYA_00850 PF02416 mttA/Hcf106 family VYA_00860 PF00902 Sec-independent protein translocase protein (TatC) VYA_00870 PF01026 TatD related DNase VYA_00880 PF00490 Delta-aminolevulinic acid dehydratase VYA_00900 PF01612 3'-5' exonuclease VYA_00900 PF00476 DNA polymerase family A VYA_00900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VYA_00900 PF01367 5'-3' exonuclease, C-terminal SAM fold VYA_00910 PF01926 50S ribosome-binding GTPase VYA_00920 PF00034 Cytochrome c VYA_00940 PF04220 Der GTPase activator (YihI) VYA_00950 PF10675 Protein of unknown function (DUF2489) VYA_00960 PF06969 HemN C-terminal domain VYA_00960 PF04055 Radical SAM superfamily VYA_00970 PF00962 Adenosine/AMP deaminase VYA_00980 PF00563 EAL domain VYA_00980 PF00990 Diguanylate cyclase, GGDEF domain VYA_00980 PF03707 Bacterial signalling protein N terminal repeat VYA_00990 PF00158 Sigma-54 interaction domain VYA_00990 PF02954 Bacterial regulatory protein, Fis family VYA_00990 PF00072 Response regulator receiver domain VYA_01000 PF00512 His Kinase A (phospho-acceptor) domain VYA_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_01000 PF00989 PAS fold VYA_01020 PF00120 Glutamine synthetase, catalytic domain VYA_01020 PF03951 Glutamine synthetase, beta-Grasp domain VYA_01030 PF00679 Elongation factor G C-terminus VYA_01030 PF00009 Elongation factor Tu GTP binding domain VYA_01030 PF03144 Elongation factor Tu domain 2 VYA_01060 PF03631 Virulence factor BrkB VYA_01070 PF02580 D-Tyr-tRNA(Tyr) deacylase VYA_01080 PF09500 Putative thioesterase (yiiD_Cterm) VYA_01080 PF00583 Acetyltransferase (GNAT) family VYA_01100 PF01293 Phosphoenolpyruvate carboxykinase VYA_01110 PF01430 Hsp33 protein VYA_01120 PF01479 S4 domain VYA_01130 PF11356 Type II secretion system protein C VYA_01140 PF03958 Bacterial type II/III secretion system short domain VYA_01140 PF00263 Bacterial type II and III secretion system protein VYA_01150 PF00437 Type II/IV secretion system protein VYA_01160 PF00482 Type II secretion system (T2SS), protein F VYA_01170 PF08334 Type II secretion system (T2SS), protein G VYA_01170 PF07963 Prokaryotic N-terminal methylation motif VYA_01180 PF12019 Type II transport protein GspH VYA_01190 PF02501 Type II secretion system (T2SS), protein I VYA_01190 PF07963 Prokaryotic N-terminal methylation motif VYA_01200 PF11612 Type II secretion system (T2SS), protein J VYA_01200 PF07963 Prokaryotic N-terminal methylation motif VYA_01210 PF03934 Type II secretion system (T2SS), protein K VYA_01220 PF12693 GspL periplasmic domain VYA_01220 PF05134 Type II secretion system (T2SS), protein L VYA_01230 PF04612 Type II secretion system (T2SS), protein M VYA_01240 PF01203 Type II secretion system (T2SS), protein N VYA_01250 PF00459 Inositol monophosphatase family VYA_01260 PF00293 NUDIX domain VYA_01270 PF01521 Iron-sulphur cluster biosynthesis VYA_01270 PF01106 NifU-like domain VYA_01280 PF00156 Phosphoribosyl transferase domain VYA_01300 PF00561 alpha/beta hydrolase fold VYA_01320 PF09371 Tex-like protein N-terminal domain VYA_01320 PF17674 HHH domain VYA_01320 PF16921 Tex protein YqgF-like domain VYA_01320 PF00575 S1 RNA binding domain VYA_01340 PF01272 Transcription elongation factor, GreA/GreB, C-term VYA_01340 PF03449 Transcription elongation factor, N-terminal VYA_01350 PF00072 Response regulator receiver domain VYA_01350 PF00486 Transcriptional regulatory protein, C terminal VYA_01360 PF00512 His Kinase A (phospho-acceptor) domain VYA_01360 PF00672 HAMP domain VYA_01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_01370 PF00860 Permease family VYA_01380 PF00326 Prolyl oligopeptidase family VYA_01380 PF07676 WD40-like Beta Propeller Repeat VYA_01390 PF17191 RecG wedge domain VYA_01390 PF00271 Helicase conserved C-terminal domain VYA_01390 PF00270 DEAD/DEAH box helicase VYA_01400 PF00588 SpoU rRNA Methylase family VYA_01400 PF12105 SpoU, rRNA methylase, C-terminal VYA_01410 PF04607 Region found in RelA / SpoT proteins VYA_01410 PF13291 ACT domain VYA_01410 PF02824 TGS domain VYA_01420 PF01192 RNA polymerase Rpb6 VYA_01430 PF00625 Guanylate kinase VYA_01470 PF02472 Biopolymer transport protein ExbD/TolR VYA_01480 PF01618 MotA/TolQ/ExbB proton channel family VYA_01510 PF07715 TonB-dependent Receptor Plug Domain VYA_01510 PF00593 TonB dependent receptor VYA_01520 PF00528 Binding-protein-dependent transport system inner membrane component VYA_01530 PF00528 Binding-protein-dependent transport system inner membrane component VYA_01530 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_01540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_01550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_01550 PF00005 ABC transporter VYA_01560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_01560 PF00005 ABC transporter VYA_01580 PF00892 EamA-like transporter family VYA_01610 PF04138 GtrA-like protein VYA_01620 PF00535 Glycosyl transferase family 2 VYA_01630 PF08340 Domain of unknown function (DUF1732) VYA_01630 PF03755 YicC-like family, N-terminal region VYA_01640 PF01138 3' exoribonuclease family, domain 1 VYA_01640 PF03725 3' exoribonuclease family, domain 2 VYA_01650 PF00156 Phosphoribosyl transferase domain VYA_01660 PF03279 Bacterial lipid A biosynthesis acyltransferase VYA_01670 PF00440 Bacterial regulatory proteins, tetR family VYA_01680 PF04127 DNA / pantothenate metabolism flavoprotein VYA_01680 PF02441 Flavoprotein VYA_01690 PF04002 RadC-like JAB domain VYA_01700 PF00830 Ribosomal L28 family VYA_01710 PF00471 Ribosomal protein L33 VYA_01730 PF06827 Zinc finger found in FPG and IleRS VYA_01730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VYA_01730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VYA_01750 PF01467 Cytidylyltransferase-like VYA_01760 PF05686 Glycosyl transferase family 90 VYA_01770 PF00535 Glycosyl transferase family 2 VYA_01780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VYA_01790 PF01219 Prokaryotic diacylglycerol kinase VYA_01810 PF16363 GDP-mannose 4,6 dehydratase VYA_01820 PF00483 Nucleotidyl transferase VYA_01830 PF05523 WxcM-like, C-terminal VYA_01870 PF00501 AMP-binding enzyme VYA_01870 PF13193 AMP-binding enzyme C-terminal domain VYA_01880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VYA_01890 PF00535 Glycosyl transferase family 2 VYA_01920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VYA_01930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VYA_01940 PF03279 Bacterial lipid A biosynthesis acyltransferase VYA_01950 PF01370 NAD dependent epimerase/dehydratase family VYA_01960 PF06082 Exopolysaccharide biosynthesis protein YbjH VYA_02040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VYA_02040 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VYA_02050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VYA_02050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VYA_02050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VYA_02060 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_02070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VYA_02110 PF02350 UDP-N-acetylglucosamine 2-epimerase VYA_02140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VYA_02140 PF01565 FAD binding domain VYA_02160 PF00535 Glycosyl transferase family 2 VYA_02170 PF01370 NAD dependent epimerase/dehydratase family VYA_02180 PF02397 Bacterial sugar transferase VYA_02190 PF02719 Polysaccharide biosynthesis protein VYA_02200 PF10996 Beta-Casp domain VYA_02200 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VYA_02200 PF00753 Metallo-beta-lactamase superfamily VYA_02210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VYA_02210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VYA_02210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VYA_02220 PF01370 NAD dependent epimerase/dehydratase family VYA_02240 PF00121 Triosephosphate isomerase VYA_02280 PF00455 DeoR C terminal sensor domain VYA_02280 PF08220 DeoR-like helix-turn-helix domain VYA_02290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VYA_02300 PF06005 Cell division protein ZapB VYA_02310 PF03737 Aldolase/RraA VYA_02320 PF01040 UbiA prenyltransferase family VYA_02330 PF00004 ATPase family associated with various cellular activities (AAA) VYA_02330 PF07724 AAA domain (Cdc48 subfamily) VYA_02340 PF00227 Proteasome subunit VYA_02360 PF00356 Bacterial regulatory proteins, lacI family VYA_02370 PF00270 DEAD/DEAH box helicase VYA_02370 PF17764 3′ DNA-binding domain (3′BD) VYA_02370 PF00271 Helicase conserved C-terminal domain VYA_02370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VYA_02370 PF18074 Primosomal protein N C-terminal domain VYA_02380 PF01197 Ribosomal protein L31 VYA_02390 PF00338 Ribosomal protein S10p/S20e VYA_02400 PF00297 Ribosomal protein L3 VYA_02410 PF00573 Ribosomal protein L4/L1 family VYA_02420 PF00276 Ribosomal protein L23 VYA_02430 PF03947 Ribosomal Proteins L2, C-terminal domain VYA_02430 PF00181 Ribosomal Proteins L2, RNA binding domain VYA_02440 PF00203 Ribosomal protein S19 VYA_02450 PF00237 Ribosomal protein L22p/L17e VYA_02460 PF07650 KH domain VYA_02460 PF00189 Ribosomal protein S3, C-terminal domain VYA_02470 PF00252 Ribosomal protein L16p/L10e VYA_02480 PF00831 Ribosomal L29 protein VYA_02490 PF00366 Ribosomal protein S17 VYA_02500 PF00238 Ribosomal protein L14p/L23e VYA_02510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VYA_02510 PF00467 KOW motif VYA_02520 PF00281 Ribosomal protein L5 VYA_02520 PF00673 ribosomal L5P family C-terminus VYA_02530 PF00253 Ribosomal protein S14p/S29e VYA_02540 PF00410 Ribosomal protein S8 VYA_02550 PF00347 Ribosomal protein L6 VYA_02560 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VYA_02570 PF03719 Ribosomal protein S5, C-terminal domain VYA_02570 PF00333 Ribosomal protein S5, N-terminal domain VYA_02580 PF00327 Ribosomal protein L30p/L7e VYA_02590 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VYA_02600 PF00344 SecY translocase VYA_02610 PF00416 Ribosomal protein S13/S18 VYA_02620 PF00411 Ribosomal protein S11 VYA_02630 PF01479 S4 domain VYA_02630 PF00163 Ribosomal protein S4/S9 N-terminal domain VYA_02640 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VYA_02640 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VYA_02640 PF01000 RNA polymerase Rpb3/RpoA insert domain VYA_02650 PF01196 Ribosomal protein L17 VYA_02670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VYA_02670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_02690 PF13673 Acetyltransferase (GNAT) domain VYA_02700 PF00270 DEAD/DEAH box helicase VYA_02700 PF03880 DbpA RNA binding domain VYA_02700 PF00271 Helicase conserved C-terminal domain VYA_02720 PF00149 Calcineurin-like phosphoesterase VYA_02720 PF02872 5'-nucleotidase, C-terminal domain VYA_02730 PF14824 Sirohaem biosynthesis protein central VYA_02730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VYA_02730 PF10414 Sirohaem synthase dimerisation region VYA_02740 PF01507 Phosphoadenosine phosphosulfate reductase family VYA_02750 PF00009 Elongation factor Tu GTP binding domain VYA_02760 PF02080 TrkA-C domain VYA_02760 PF03600 Citrate transporter VYA_02810 PF00005 ABC transporter VYA_02840 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VYA_02860 PF01625 Peptide methionine sulfoxide reductase VYA_02870 PF07244 Surface antigen variable number repeat VYA_02870 PF17243 POTRA domain TamA domain 1 VYA_02870 PF01103 Surface antigen VYA_02880 PF04357 TamB, inner membrane protein subunit of TAM complex VYA_02890 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VYA_02900 PF00719 Inorganic pyrophosphatase VYA_02910 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VYA_02920 PF01225 Mur ligase family, catalytic domain VYA_02920 PF02875 Mur ligase family, glutamate ligase domain VYA_02920 PF08245 Mur ligase middle domain VYA_02930 PF02441 Flavoprotein VYA_02950 PF00528 Binding-protein-dependent transport system inner membrane component VYA_02960 PF00005 ABC transporter VYA_02990 PF16868 NMT1-like family VYA_03000 PF01316 Arginine repressor, DNA binding domain VYA_03000 PF02863 Arginine repressor, C-terminal domain VYA_03010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VYA_03010 PF00056 lactate/malate dehydrogenase, NAD binding domain VYA_03030 PF00348 Polyprenyl synthetase VYA_03040 PF00829 Ribosomal prokaryotic L21 protein VYA_03050 PF01016 Ribosomal L27 protein VYA_03060 PF01018 GTP1/OBG VYA_03060 PF01926 50S ribosome-binding GTPase VYA_03080 PF06738 Putative threonine/serine exporter VYA_03090 PF12821 Threonine/Serine exporter, ThrE VYA_03100 PF00186 Dihydrofolate reductase VYA_03110 PF00149 Calcineurin-like phosphoesterase VYA_03120 PF04379 ApaG domain VYA_03130 PF00398 Ribosomal RNA adenine dimethylase VYA_03140 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VYA_03150 PF09312 SurA N-terminal domain VYA_03160 PF04453 LPS transport system D VYA_03160 PF03968 OstA-like protein VYA_03170 PF05099 Tellurite resistance protein TerB VYA_03170 PF00226 DnaJ domain VYA_03190 PF00694 Aconitase C-terminal domain VYA_03200 PF00330 Aconitase family (aconitate hydratase) VYA_03210 PF00180 Isocitrate/isopropylmalate dehydrogenase VYA_03220 PF08502 LeuA allosteric (dimerisation) domain VYA_03220 PF00682 HMGL-like VYA_03240 PF01569 PAP2 superfamily VYA_03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_03260 PF03466 LysR substrate binding domain VYA_03270 PF00501 AMP-binding enzyme VYA_03280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VYA_03280 PF00205 Thiamine pyrophosphate enzyme, central domain VYA_03280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VYA_03290 PF10369 Small subunit of acetolactate synthase VYA_03300 PF07694 5TMR of 5TMR-LYT VYA_03300 PF00990 Diguanylate cyclase, GGDEF domain VYA_03320 PF00224 Pyruvate kinase, barrel domain VYA_03320 PF02887 Pyruvate kinase, alpha/beta domain VYA_03330 PF00455 DeoR C terminal sensor domain VYA_03330 PF08220 DeoR-like helix-turn-helix domain VYA_03340 PF01380 SIS domain VYA_03390 PF02899 Phage integrase, N-terminal SAM-like domain VYA_03390 PF00589 Phage integrase family VYA_03480 PF04546 Sigma-70, non-essential region VYA_03480 PF03979 Sigma-70 factor, region 1.1 VYA_03480 PF00140 Sigma-70 factor, region 1.2 VYA_03480 PF04545 Sigma-70, region 4 VYA_03480 PF04539 Sigma-70 region 3 VYA_03480 PF04542 Sigma-70 region 2 VYA_03490 PF10410 DnaB-helicase binding domain of primase VYA_03490 PF08278 DNA primase DnaG DnaB-binding VYA_03490 PF08275 DNA primase catalytic core, N-terminal domain VYA_03490 PF01807 CHC2 zinc finger VYA_03500 PF09424 Yqey-like protein VYA_03510 PF01165 Ribosomal protein S21 VYA_03520 PF00814 Glycoprotease family VYA_03530 PF00561 alpha/beta hydrolase fold VYA_03540 PF02660 Glycerol-3-phosphate acyltransferase VYA_03550 PF02152 Dihydroneopterin aldolase VYA_03560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VYA_03570 PF02673 Bacitracin resistance protein BacA VYA_03580 PF01966 HD domain VYA_03580 PF01743 Poly A polymerase head domain VYA_03580 PF12627 Probable RNA and SrmB- binding site of polymerase A VYA_03590 PF01471 Putative peptidoglycan binding domain VYA_03590 PF13401 AAA domain VYA_03610 PF08239 Bacterial SH3 domain VYA_03620 PF01384 Phosphate transporter family VYA_03630 PF01865 Protein of unknown function DUF47 VYA_03640 PF01928 CYTH domain VYA_03650 PF07885 Ion channel VYA_03660 PF00672 HAMP domain VYA_03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_03660 PF02743 Cache domain VYA_03670 PF03710 Glutamate-ammonia ligase adenylyltransferase VYA_03670 PF08335 GlnD PII-uridylyltransferase VYA_03680 PF00294 pfkB family carbohydrate kinase VYA_03680 PF01467 Cytidylyltransferase-like VYA_03690 PF02321 Outer membrane efflux protein VYA_03700 PF00293 NUDIX domain VYA_03710 PF06853 Protein of unknown function (DUF1249) VYA_03720 PF00149 Calcineurin-like phosphoesterase VYA_03730 PF05728 Uncharacterised protein family (UPF0227) VYA_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_03740 PF01751 Toprim domain VYA_03740 PF00986 DNA gyrase B subunit, carboxyl terminus VYA_03740 PF00204 DNA gyrase B VYA_03750 PF00521 DNA gyrase/topoisomerase IV, subunit A VYA_03750 PF03989 DNA gyrase C-terminal domain, beta-propeller VYA_03760 PF13180 PDZ domain VYA_03770 PF00595 PDZ domain VYA_03780 PF06295 Protein of unknown function (DUF1043) VYA_03790 PF03969 AFG1-like ATPase VYA_03800 PF00572 Ribosomal protein L13 VYA_03810 PF00380 Ribosomal protein S9/S16 VYA_03820 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VYA_03820 PF00355 Rieske [2Fe-2S] domain VYA_03830 PF00033 Cytochrome b/b6/petB VYA_03830 PF00032 Cytochrome b(C-terminal)/b6/petD VYA_03840 PF02167 Cytochrome C1 family VYA_03850 PF02798 Glutathione S-transferase, N-terminal domain VYA_03850 PF00043 Glutathione S-transferase, C-terminal domain VYA_03860 PF04386 Stringent starvation protein B VYA_03870 PF04972 BON domain VYA_03880 PF13580 SIS domain VYA_03890 PF02021 Uncharacterised protein family UPF0102 VYA_03900 PF04348 LppC putative lipoprotein VYA_03910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VYA_03930 PF01795 MraW methylase family VYA_03940 PF04999 Cell division protein FtsL VYA_03950 PF03717 Penicillin-binding Protein dimerisation domain VYA_03950 PF00905 Penicillin binding protein transpeptidase domain VYA_03960 PF01225 Mur ligase family, catalytic domain VYA_03960 PF02875 Mur ligase family, glutamate ligase domain VYA_03960 PF08245 Mur ligase middle domain VYA_03970 PF01225 Mur ligase family, catalytic domain VYA_03970 PF02875 Mur ligase family, glutamate ligase domain VYA_03970 PF08245 Mur ligase middle domain VYA_03980 PF00953 Glycosyl transferase family 4 VYA_03980 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VYA_03990 PF02875 Mur ligase family, glutamate ligase domain VYA_03990 PF08245 Mur ligase middle domain VYA_04000 PF01098 Cell cycle protein VYA_04010 PF04101 Glycosyltransferase family 28 C-terminal domain VYA_04010 PF03033 Glycosyltransferase family 28 N-terminal domain VYA_04020 PF01225 Mur ligase family, catalytic domain VYA_04020 PF02875 Mur ligase family, glutamate ligase domain VYA_04020 PF08245 Mur ligase middle domain VYA_04030 PF03799 Cell division protein FtsQ VYA_04030 PF08478 POTRA domain, FtsQ-type VYA_04040 PF02491 SHS2 domain inserted in FTSA VYA_04050 PF12327 FtsZ family, C-terminal domain VYA_04050 PF00091 Tubulin/FtsZ family, GTPase domain VYA_04060 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VYA_04080 PF07516 SecA Wing and Scaffold domain VYA_04080 PF01043 SecA preprotein cross-linking domain VYA_04080 PF07517 SecA DEAD-like domain VYA_04080 PF02810 SEC-C motif VYA_04090 PF00293 NUDIX domain VYA_04100 PF05173 Dihydrodipicolinate reductase, C-terminus VYA_04100 PF01113 Dihydrodipicolinate reductase, N-terminus VYA_04110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VYA_04110 PF00117 Glutamine amidotransferase class-I VYA_04120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VYA_04120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VYA_04120 PF02142 MGS-like domain VYA_04130 PF01925 Sulfite exporter TauE/SafE VYA_04140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_04140 PF03466 LysR substrate binding domain VYA_04150 PF03458 UPF0126 domain VYA_04160 PF01497 Periplasmic binding protein VYA_04180 PF01048 Phosphorylase superfamily VYA_04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_04200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VYA_04210 PF00310 Glutamine amidotransferases class-II VYA_04210 PF04898 Glutamate synthase central domain VYA_04210 PF01645 Conserved region in glutamate synthase VYA_04210 PF01493 GXGXG motif VYA_04220 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VYA_04220 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_04230 PF00310 Glutamine amidotransferases class-II VYA_04230 PF04898 Glutamate synthase central domain VYA_04230 PF01645 Conserved region in glutamate synthase VYA_04230 PF01493 GXGXG motif VYA_04240 PF04055 Radical SAM superfamily VYA_04240 PF16199 Radical_SAM C-terminal domain VYA_04250 PF00072 Response regulator receiver domain VYA_04250 PF18415 Histidine kinase receptor ArcB trans-membrane domain VYA_04250 PF01627 Hpt domain VYA_04250 PF00512 His Kinase A (phospho-acceptor) domain VYA_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_04250 PF00989 PAS fold VYA_04270 PF00072 Response regulator receiver domain VYA_04270 PF00486 Transcriptional regulatory protein, C terminal VYA_04290 PF03737 Aldolase/RraA VYA_04310 PF03447 Homoserine dehydrogenase, NAD binding domain VYA_04310 PF13840 ACT domain VYA_04310 PF00696 Amino acid kinase family VYA_04310 PF01842 ACT domain VYA_04310 PF00742 Homoserine dehydrogenase VYA_04320 PF08544 GHMP kinases C terminal VYA_04320 PF00288 GHMP kinases N terminal domain VYA_04330 PF00291 Pyridoxal-phosphate dependent enzyme VYA_04330 PF14821 Threonine synthase N terminus VYA_04340 PF01228 Glycine radical VYA_04350 PF01261 Xylose isomerase-like TIM barrel VYA_04360 PF03167 Uracil DNA glycosylase superfamily VYA_04390 PF01235 Sodium:alanine symporter family VYA_04450 PF03883 Peroxide stress protein YaaA VYA_04460 PF00270 DEAD/DEAH box helicase VYA_04460 PF00271 Helicase conserved C-terminal domain VYA_04470 PF05175 Methyltransferase small domain VYA_04480 PF05525 Branched-chain amino acid transport protein VYA_04490 PF00258 Flavodoxin VYA_04500 PF02899 Phage integrase, N-terminal SAM-like domain VYA_04500 PF00589 Phage integrase family VYA_04510 PF13098 Thioredoxin-like domain VYA_04510 PF10411 Disulfide bond isomerase protein N-terminus VYA_04520 PF17768 RecJ OB domain VYA_04520 PF02272 DHHA1 domain VYA_04520 PF01368 DHH family VYA_04530 PF02272 DHHA1 domain VYA_04530 PF17768 RecJ OB domain VYA_04530 PF01368 DHH family VYA_04540 PF00472 RF-1 domain VYA_04540 PF03462 PCRF domain VYA_04550 PF00152 tRNA synthetases class II (D, K and N) VYA_04550 PF01336 OB-fold nucleic acid binding domain VYA_04560 PF02954 Bacterial regulatory protein, Fis family VYA_04560 PF00072 Response regulator receiver domain VYA_04560 PF00158 Sigma-54 interaction domain VYA_04580 PF00248 Aldo/keto reductase family VYA_04600 PF02976 DNA mismatch repair enzyme MutH VYA_04610 PF00293 NUDIX domain VYA_04620 PF02896 PEP-utilising enzyme, TIM barrel domain VYA_04620 PF01590 GAF domain VYA_04620 PF05524 PEP-utilising enzyme, N-terminal VYA_04620 PF00391 PEP-utilising enzyme, mobile domain VYA_04630 PF01925 Sulfite exporter TauE/SafE VYA_04640 PF01790 Prolipoprotein diacylglyceryl transferase VYA_04650 PF00303 Thymidylate synthase VYA_04660 PF02690 Na+/Pi-cotransporter VYA_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_04680 PF03466 LysR substrate binding domain VYA_04690 PF01022 Bacterial regulatory protein, arsR family VYA_04700 PF01649 Ribosomal protein S20 VYA_04710 PF03023 Lipid II flippase MurJ VYA_04720 PF06574 FAD synthetase VYA_04720 PF01687 Riboflavin kinase VYA_04730 PF08264 Anticodon-binding domain of tRNA VYA_04730 PF00133 tRNA synthetases class I (I, L, M and V) VYA_04730 PF06827 Zinc finger found in FPG and IleRS VYA_04740 PF01252 Signal peptidase (SPase) II VYA_04750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_04760 PF02401 LytB protein VYA_04770 PF04397 LytTr DNA-binding domain VYA_04770 PF00072 Response regulator receiver domain VYA_04780 PF07694 5TMR of 5TMR-LYT VYA_04780 PF06580 Histidine kinase VYA_04790 PF02554 Carbon starvation protein CstA VYA_04820 PF01380 SIS domain VYA_04830 PF03702 Anhydro-N-acetylmuramic acid kinase VYA_04840 PF00933 Glycosyl hydrolase family 3 N terminal domain VYA_04850 PF00793 DAHP synthetase I family VYA_04860 PF01817 Chorismate mutase type II VYA_04860 PF02153 Prephenate dehydrogenase VYA_04870 PF04225 Opacity-associated protein A LysM-like domain VYA_04870 PF01551 Peptidase family M23 VYA_04880 PF07238 PilZ domain VYA_04890 PF00005 ABC transporter VYA_04890 PF12848 ABC transporter VYA_04900 PF14718 Soluble lytic murein transglycosylase L domain VYA_04900 PF01464 Transglycosylase SLT domain VYA_04910 PF01371 Trp repressor protein VYA_04920 PF01931 Protein of unknown function DUF84 VYA_04930 PF00800 Prephenate dehydratase VYA_04930 PF01817 Chorismate mutase type II VYA_04940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VYA_04950 PF01464 Transglycosylase SLT domain VYA_04960 PF13525 Outer membrane lipoprotein VYA_04970 PF00849 RNA pseudouridylate synthase VYA_04970 PF01479 S4 domain VYA_04980 PF02578 Multi-copper polyphenol oxidoreductase laccase VYA_04990 PF10431 C-terminal, D2-small domain, of ClpB protein VYA_04990 PF02861 Clp amino terminal domain, pathogenicity island component VYA_04990 PF07724 AAA domain (Cdc48 subfamily) VYA_04990 PF00004 ATPase family associated with various cellular activities (AAA) VYA_04990 PF17871 AAA lid domain VYA_05010 PF13358 DDE superfamily endonuclease VYA_05110 PF03411 Penicillin-insensitive murein endopeptidase VYA_05130 PF00037 4Fe-4S binding domain VYA_05140 PF01136 Peptidase family U32 VYA_05140 PF16325 Peptidase family U32 C-terminal domain VYA_05150 PF04381 Putative exonuclease, RdgC VYA_05160 PF00486 Transcriptional regulatory protein, C terminal VYA_05160 PF00072 Response regulator receiver domain VYA_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_05170 PF00989 PAS fold VYA_05170 PF11808 Phosphate regulon sensor protein PhoR VYA_05170 PF00512 His Kinase A (phospho-acceptor) domain VYA_05180 PF12849 PBP superfamily domain VYA_05190 PF02541 Ppx/GppA phosphatase family VYA_05200 PF02541 Ppx/GppA phosphatase family VYA_05210 PF02503 Polyphosphate kinase middle domain VYA_05210 PF13090 Polyphosphate kinase C-terminal domain 2 VYA_05210 PF17941 Polyphosphate kinase C-terminal domain 1 VYA_05210 PF13089 Polyphosphate kinase N-terminal domain VYA_05220 PF00528 Binding-protein-dependent transport system inner membrane component VYA_05230 PF00528 Binding-protein-dependent transport system inner membrane component VYA_05240 PF00005 ABC transporter VYA_05250 PF01895 PhoU domain VYA_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_05270 PF03466 LysR substrate binding domain VYA_05280 PF03976 Polyphosphate kinase 2 (PPK2) VYA_05290 PF03932 CutC family VYA_05300 PF10417 C-terminal domain of 1-Cys peroxiredoxin VYA_05300 PF00578 AhpC/TSA family VYA_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_05310 PF03466 LysR substrate binding domain VYA_05320 PF01274 Malate synthase VYA_05330 PF00463 Isocitrate lyase family VYA_05340 PF00571 CBS domain VYA_05360 PF02547 Queuosine biosynthesis protein VYA_05370 PF01702 Queuine tRNA-ribosyltransferase VYA_05380 PF02699 Preprotein translocase subunit VYA_05390 PF07549 SecD/SecF GG Motif VYA_05390 PF13721 SecD export protein N-terminal TM region VYA_05390 PF02355 Protein export membrane protein VYA_05400 PF02355 Protein export membrane protein VYA_05400 PF07549 SecD/SecF GG Motif VYA_05410 PF00459 Inositol monophosphatase family VYA_05420 PF00588 SpoU rRNA Methylase family VYA_05430 PF02082 Transcriptional regulator VYA_05440 PF00266 Aminotransferase class-V VYA_05450 PF01592 NifU-like N terminal domain VYA_05460 PF01521 Iron-sulphur cluster biosynthesis VYA_05470 PF00226 DnaJ domain VYA_05470 PF07743 HSCB C-terminal oligomerisation domain VYA_05480 PF00012 Hsp70 protein VYA_05490 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_05500 PF04384 Iron-sulphur cluster assembly VYA_05510 PF12404 Peptidase VYA_05510 PF00883 Cytosol aminopeptidase family, catalytic domain VYA_05520 PF00334 Nucleoside diphosphate kinase VYA_05530 PF04055 Radical SAM superfamily VYA_05540 PF13464 Domain of unknown function (DUF4115) VYA_05550 PF04551 GcpE protein VYA_05560 PF13393 Histidyl-tRNA synthetase VYA_05560 PF03129 Anticodon binding domain VYA_05570 PF09976 Tetratricopeptide repeat-like domain VYA_05580 PF13360 PQQ-like domain VYA_05590 PF01926 50S ribosome-binding GTPase VYA_05590 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VYA_05620 PF02601 Exonuclease VII, large subunit VYA_05620 PF13742 OB-fold nucleic acid binding domain VYA_05630 PF00571 CBS domain VYA_05630 PF00478 IMP dehydrogenase / GMP reductase domain VYA_05640 PF00958 GMP synthase C terminal domain VYA_05640 PF00117 Glutamine amidotransferase class-I VYA_05640 PF02540 NAD synthase VYA_05650 PF01184 GPR1/FUN34/yaaH family VYA_05660 PF01235 Sodium:alanine symporter family VYA_05670 PF01266 FAD dependent oxidoreductase VYA_05680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_05680 PF03466 LysR substrate binding domain VYA_05690 PF01053 Cys/Met metabolism PLP-dependent enzyme VYA_05700 PF00202 Aminotransferase class-III VYA_05740 PF00145 C-5 cytosine-specific DNA methylase VYA_05790 PF01668 SmpB protein VYA_05800 PF03364 Polyketide cyclase / dehydrase and lipid transport VYA_05810 PF03658 RnfH family Ubiquitin VYA_05820 PF04355 SmpA / OmlA family VYA_05830 PF02463 RecF/RecN/SMC N terminal domain VYA_05840 PF01513 ATP-NAD kinase VYA_05850 PF01025 GrpE VYA_05860 PF00375 Sodium:dicarboxylate symporter family VYA_05870 PF00012 Hsp70 protein VYA_05880 PF00226 DnaJ domain VYA_05880 PF01556 DnaJ C terminal domain VYA_05880 PF00684 DnaJ central domain VYA_05890 PF07963 Prokaryotic N-terminal methylation motif VYA_05890 PF00114 Pilin (bacterial filament) VYA_05930 PF03806 AbgT putative transporter family VYA_05940 PF14437 MafB19-like deaminase VYA_05960 PF01464 Transglycosylase SLT domain VYA_05960 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_05970 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VYA_05970 PF02769 AIR synthase related protein, C-terminal domain VYA_05970 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VYA_06010 PF07687 Peptidase dimerisation domain VYA_06010 PF01546 Peptidase family M20/M25/M40 VYA_06020 PF00860 Permease family VYA_06030 PF00156 Phosphoribosyl transferase domain VYA_06040 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VYA_06050 PF07417 Sigma factor-binding transcriptional regulator Crl VYA_06060 PF00696 Amino acid kinase family VYA_06060 PF01472 PUA domain VYA_06070 PF00171 Aldehyde dehydrogenase family VYA_06080 PF03477 ATP cone domain VYA_06090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VYA_06090 PF01872 RibD C-terminal domain VYA_06100 PF00677 Lumazine binding domain VYA_06110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VYA_06110 PF00925 GTP cyclohydrolase II VYA_06120 PF00925 GTP cyclohydrolase II VYA_06120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VYA_06130 PF00885 6,7-dimethyl-8-ribityllumazine synthase VYA_06140 PF01029 NusB family VYA_06150 PF00586 AIR synthase related protein, N-terminal domain VYA_06150 PF02769 AIR synthase related protein, C-terminal domain VYA_06160 PF04608 Phosphatidylglycerophosphatase A VYA_06170 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VYA_06170 PF02779 Transketolase, pyrimidine binding domain VYA_06170 PF02780 Transketolase, C-terminal domain VYA_06180 PF00348 Polyprenyl synthetase VYA_06190 PF02609 Exonuclease VII small subunit VYA_06200 PF01618 MotA/TolQ/ExbB proton channel family VYA_06210 PF00691 OmpA family VYA_06210 PF13677 Membrane MotB of proton-channel complex MotA/MotB VYA_06220 PF02568 Thiamine biosynthesis protein (ThiI) VYA_06220 PF02926 THUMP domain VYA_06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_06240 PF03466 LysR substrate binding domain VYA_06260 PF04241 Protein of unknown function (DUF423) VYA_06270 PF01728 FtsJ-like methyltransferase VYA_06270 PF18125 RlmM ferredoxin-like domain VYA_06280 PF01367 5'-3' exonuclease, C-terminal SAM fold VYA_06280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VYA_06290 PF11892 Domain of unknown function (DUF3412) VYA_06290 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VYA_06290 PF03641 Possible lysine decarboxylase VYA_06300 PF00990 Diguanylate cyclase, GGDEF domain VYA_06320 PF14489 QueF-like protein VYA_06320 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VYA_06330 PF07348 Syd protein (SUKH-2) VYA_06340 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VYA_06350 PF03180 NLPA lipoprotein VYA_06360 PF00528 Binding-protein-dependent transport system inner membrane component VYA_06370 PF00005 ABC transporter VYA_06370 PF09383 NIL domain VYA_06390 PF00356 Bacterial regulatory proteins, lacI family VYA_06400 PF00367 phosphotransferase system, EIIB VYA_06400 PF02378 Phosphotransferase system, EIIC VYA_06410 PF00128 Alpha amylase, catalytic domain VYA_06410 PF16657 Maltogenic Amylase, C-terminal domain VYA_06420 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VYA_06420 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VYA_06430 PF00464 Serine hydroxymethyltransferase VYA_06440 PF04055 Radical SAM superfamily VYA_06440 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VYA_06450 PF03099 Biotin/lipoate A/B protein ligase family VYA_06460 PF04359 Protein of unknown function (DUF493) VYA_06470 PF07943 Penicillin-binding protein 5, C-terminal domain VYA_06470 PF00768 D-alanyl-D-alanine carboxypeptidase VYA_06480 PF05036 Sporulation related domain VYA_06480 PF03330 Lytic transglycolase VYA_06490 PF01098 Cell cycle protein VYA_06500 PF03717 Penicillin-binding Protein dimerisation domain VYA_06500 PF00905 Penicillin binding protein transpeptidase domain VYA_06510 PF02590 Predicted SPOUT methyltransferase VYA_06530 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VYA_06530 PF06144 DNA polymerase III, delta subunit VYA_06540 PF04390 Lipopolysaccharide-assembly VYA_06550 PF13603 Leucyl-tRNA synthetase, Domain 2 VYA_06550 PF00133 tRNA synthetases class I (I, L, M and V) VYA_06550 PF08264 Anticodon-binding domain of tRNA VYA_06560 PF07295 Zinc-ribbon containing domain VYA_06570 PF00795 Carbon-nitrogen hydrolase VYA_06580 PF00571 CBS domain VYA_06580 PF03471 Transporter associated domain VYA_06590 PF02130 Uncharacterized protein family UPF0054 VYA_06600 PF02562 PhoH-like protein VYA_06610 PF00919 Uncharacterized protein family UPF0004 VYA_06610 PF01938 TRAM domain VYA_06610 PF04055 Radical SAM superfamily VYA_06620 PF01494 FAD binding domain VYA_06630 PF01926 50S ribosome-binding GTPase VYA_06630 PF06071 Protein of unknown function (DUF933) VYA_06640 PF01195 Peptidyl-tRNA hydrolase VYA_06650 PF14572 Phosphoribosyl synthetase-associated domain VYA_06650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VYA_06660 PF08544 GHMP kinases C terminal VYA_06660 PF00288 GHMP kinases N terminal domain VYA_06670 PF03550 Outer membrane lipoprotein LolB VYA_06680 PF01488 Shikimate / quinate 5-dehydrogenase VYA_06680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VYA_06680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VYA_06690 PF03462 PCRF domain VYA_06690 PF00472 RF-1 domain VYA_06700 PF17827 PrmC N-terminal domain VYA_06700 PF13847 Methyltransferase domain VYA_06710 PF04247 Invasion gene expression up-regulator, SirB VYA_06720 PF13369 Transglutaminase-like superfamily VYA_06730 PF00793 DAHP synthetase I family VYA_06740 PF02872 5'-nucleotidase, C-terminal domain VYA_06740 PF00149 Calcineurin-like phosphoesterase VYA_06750 PF04073 Aminoacyl-tRNA editing domain VYA_06760 PF01479 S4 domain VYA_06760 PF00849 RNA pseudouridylate synthase VYA_06770 PF01713 Smr domain VYA_06800 PF02838 Glycosyl hydrolase family 20, domain 2 VYA_06800 PF00728 Glycosyl hydrolase family 20, catalytic domain VYA_06800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VYA_06800 PF03173 Putative carbohydrate binding domain VYA_06840 PF00403 Heavy-metal-associated domain VYA_06850 PF00749 tRNA synthetases class I (E and Q), catalytic domain VYA_06860 PF00691 OmpA family VYA_06860 PF01389 OmpA-like transmembrane domain VYA_06940 PF01584 CheW-like domain VYA_06940 PF00072 Response regulator receiver domain VYA_06950 PF01739 CheR methyltransferase, SAM binding domain VYA_06950 PF03705 CheR methyltransferase, all-alpha domain VYA_06960 PF00460 Flagella basal body rod protein VYA_06970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_06970 PF00460 Flagella basal body rod protein VYA_06980 PF13861 FlgD Tudor-like domain VYA_06980 PF13860 FlgD Ig-like domain VYA_06980 PF03963 Flagellar hook capping protein - N-terminal region VYA_06990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_06990 PF00460 Flagella basal body rod protein VYA_06990 PF07559 Flagellar basal body protein FlaE VYA_07000 PF00460 Flagella basal body rod protein VYA_07000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_07010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_07010 PF00460 Flagella basal body rod protein VYA_07020 PF02107 Flagellar L-ring protein VYA_07030 PF02119 Flagellar P-ring protein VYA_07040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VYA_07040 PF10135 Rod binding protein VYA_07050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_07050 PF07196 Flagellin hook IN motif VYA_07070 PF00700 Bacterial flagellin C-terminal helical region VYA_07070 PF07196 Flagellin hook IN motif VYA_07070 PF00669 Bacterial flagellin N-terminal helical region VYA_07080 PF00669 Bacterial flagellin N-terminal helical region VYA_07080 PF07196 Flagellin hook IN motif VYA_07080 PF00700 Bacterial flagellin C-terminal helical region VYA_07090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VYA_07100 PF02896 PEP-utilising enzyme, TIM barrel domain VYA_07100 PF00391 PEP-utilising enzyme, mobile domain VYA_07100 PF05524 PEP-utilising enzyme, N-terminal VYA_07110 PF00381 PTS HPr component phosphorylation site VYA_07120 PF00291 Pyridoxal-phosphate dependent enzyme VYA_07140 PF04354 ZipA, C-terminal FtsZ-binding domain VYA_07150 PF03120 NAD-dependent DNA ligase OB-fold domain VYA_07150 PF00533 BRCA1 C Terminus (BRCT) domain VYA_07150 PF01653 NAD-dependent DNA ligase adenylation domain VYA_07150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VYA_07150 PF12826 Helix-hairpin-helix motif VYA_07200 PF01957 NfeD-like C-terminal, partner-binding VYA_07210 PF16200 C-terminal region of band_7 VYA_07210 PF01145 SPFH domain / Band 7 family VYA_07220 PF00085 Thioredoxin VYA_07230 PF00106 short chain dehydrogenase VYA_07240 PF01370 NAD dependent epimerase/dehydratase family VYA_07240 PF08338 Domain of unknown function (DUF1731) VYA_07260 PF12850 Calcineurin-like phosphoesterase superfamily domain VYA_07290 PF17323 Trans-membrane regulatory protein ToxS VYA_07300 PF00486 Transcriptional regulatory protein, C terminal VYA_07310 PF00183 Hsp90 protein VYA_07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_07320 PF05191 Adenylate kinase, active site lid VYA_07330 PF00762 Ferrochelatase VYA_07340 PF00854 POT family VYA_07350 PF02357 Transcription termination factor nusG VYA_07360 PF13537 Glutamine amidotransferase domain VYA_07360 PF00733 Asparagine synthase VYA_07370 PF00999 Sodium/hydrogen exchanger family VYA_07370 PF02254 TrkA-N domain VYA_07380 PF01047 MarR family VYA_07380 PF00480 ROK family VYA_07390 PF01979 Amidohydrolase family VYA_07400 PF02378 Phosphotransferase system, EIIC VYA_07400 PF00367 phosphotransferase system, EIIB VYA_07400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VYA_07410 PF00749 tRNA synthetases class I (E and Q), catalytic domain VYA_07410 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VYA_07420 PF01475 Ferric uptake regulator family VYA_07430 PF02774 Semialdehyde dehydrogenase, dimerisation domain VYA_07430 PF01118 Semialdehyde dehydrogenase, NAD binding domain VYA_07440 PF00258 Flavodoxin VYA_07460 PF12697 Alpha/beta hydrolase family VYA_07470 PF03925 SeqA protein C-terminal domain VYA_07470 PF17206 SeqA protein N-terminal domain VYA_07480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VYA_07480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VYA_07480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VYA_07480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VYA_07500 PF01784 NIF3 (NGG1p interacting factor 3) VYA_07510 PF00285 Citrate synthase, C-terminal domain VYA_07520 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VYA_07530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VYA_07540 PF00890 FAD binding domain VYA_07540 PF02910 Fumarate reductase flavoprotein C-term VYA_07550 PF13085 2Fe-2S iron-sulfur cluster binding domain VYA_07560 PF02779 Transketolase, pyrimidine binding domain VYA_07560 PF16870 2-oxoglutarate dehydrogenase C-terminal VYA_07560 PF00676 Dehydrogenase E1 component VYA_07560 PF16078 2-oxoglutarate dehydrogenase N-terminus VYA_07570 PF02817 e3 binding domain VYA_07570 PF00364 Biotin-requiring enzyme VYA_07570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VYA_07580 PF00549 CoA-ligase VYA_07580 PF08442 ATP-grasp domain VYA_07590 PF00549 CoA-ligase VYA_07590 PF02629 CoA binding domain VYA_07600 PF00950 ABC 3 transport family VYA_07610 PF00005 ABC transporter VYA_07620 PF01297 Zinc-uptake complex component A periplasmic VYA_07630 PF02311 AraC-like ligand binding domain VYA_07630 PF12833 Helix-turn-helix domain VYA_07640 PF04023 FeoA domain VYA_07650 PF17910 FeoB cytosolic helical domain VYA_07650 PF02421 Ferrous iron transport protein B VYA_07650 PF07670 Nucleoside recognition VYA_07650 PF07664 Ferrous iron transport protein B C terminus VYA_07680 PF00750 tRNA synthetases class I (R) VYA_07680 PF05746 DALR anticodon binding domain VYA_07680 PF03485 Arginyl tRNA synthetase N terminal domain VYA_07690 PF06185 YecM protein VYA_07700 PF01842 ACT domain VYA_07700 PF00551 Formyl transferase VYA_07710 PF13307 Helicase C-terminal domain VYA_07710 PF04851 Type III restriction enzyme, res subunit VYA_07720 PF00814 Glycoprotease family VYA_07750 PF00561 alpha/beta hydrolase fold VYA_07760 PF00501 AMP-binding enzyme VYA_07760 PF13193 AMP-binding enzyme C-terminal domain VYA_07770 PF01612 3'-5' exonuclease VYA_07770 PF00570 HRDC domain VYA_07780 PF03776 Septum formation topological specificity factor MinE VYA_07790 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VYA_07800 PF05209 Septum formation inhibitor MinC, N-terminal domain VYA_07800 PF03775 Septum formation inhibitor MinC, C-terminal domain VYA_07810 PF05166 YcgL domain VYA_07820 PF13406 Transglycosylase SLT domain VYA_07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_07830 PF03466 LysR substrate binding domain VYA_07840 PF07670 Nucleoside recognition VYA_07840 PF07662 Na+ dependent nucleoside transporter C-terminus VYA_07840 PF01773 Na+ dependent nucleoside transporter N-terminus VYA_07850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VYA_07850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VYA_07860 PF00571 CBS domain VYA_07860 PF03471 Transporter associated domain VYA_07860 PF01595 Cyclin M transmembrane N-terminal domain VYA_07870 PF00270 DEAD/DEAH box helicase VYA_07870 PF00271 Helicase conserved C-terminal domain VYA_07880 PF02080 TrkA-C domain VYA_07880 PF02254 TrkA-N domain VYA_07890 PF02386 Cation transport protein VYA_07910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VYA_07930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_07930 PF05698 Bacterial trigger factor protein (TF) C-terminus VYA_07930 PF05697 Bacterial trigger factor protein (TF) VYA_07940 PF00574 Clp protease VYA_07950 PF07724 AAA domain (Cdc48 subfamily) VYA_07950 PF10431 C-terminal, D2-small domain, of ClpB protein VYA_07950 PF06689 ClpX C4-type zinc finger VYA_07960 PF00004 ATPase family associated with various cellular activities (AAA) VYA_07960 PF05362 Lon protease (S16) C-terminal proteolytic domain VYA_07960 PF02190 ATP-dependent protease La (LON) substrate-binding domain VYA_07970 PF00216 Bacterial DNA-binding protein VYA_07980 PF13145 PPIC-type PPIASE domain VYA_08020 PF01966 HD domain VYA_08020 PF13286 Phosphohydrolase-associated domain VYA_08040 PF00155 Aminotransferase class I and II VYA_08050 PF00425 chorismate binding enzyme VYA_08060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VYA_08060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VYA_08060 PF16582 Middle domain of thiamine pyrophosphate VYA_08070 PF12697 Alpha/beta hydrolase family VYA_08080 PF00378 Enoyl-CoA hydratase/isomerase VYA_08090 PF13378 Enolase C-terminal domain-like VYA_08100 PF00501 AMP-binding enzyme VYA_08100 PF13193 AMP-binding enzyme C-terminal domain VYA_08120 PF03601 Conserved hypothetical protein 698 VYA_08130 PF07690 Major Facilitator Superfamily VYA_08170 PF00529 HlyD membrane-fusion protein of T1SS VYA_08170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_08180 PF00873 AcrB/AcrD/AcrF family VYA_08190 PF02028 BCCT, betaine/carnitine/choline family transporter VYA_08220 PF13847 Methyltransferase domain VYA_08230 PF01263 Aldose 1-epimerase VYA_08240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VYA_08240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VYA_08250 PF01641 SelR domain VYA_08270 PF07023 Protein of unknown function (DUF1315) VYA_08280 PF00710 Asparaginase, N-terminal VYA_08280 PF17763 Glutaminase/Asparaginase C-terminal domain VYA_08290 PF01343 Peptidase family S49 VYA_08300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VYA_08300 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_08310 PF00881 Nitroreductase family VYA_08320 PF01131 DNA topoisomerase VYA_08320 PF01751 Toprim domain VYA_08350 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus VYA_08350 PF08666 SAF domain VYA_08370 PF13378 Enolase C-terminal domain-like VYA_08370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VYA_08380 PF00850 Histone deacetylase domain VYA_08390 PF11893 Domain of unknown function (DUF3413) VYA_08390 PF00884 Sulfatase VYA_08400 PF07208 Protein of unknown function (DUF1414) VYA_08410 PF04245 37-kD nucleoid-associated bacterial protein VYA_08440 PF03553 Na+/H+ antiporter family VYA_08450 PF02774 Semialdehyde dehydrogenase, dimerisation domain VYA_08450 PF01118 Semialdehyde dehydrogenase, NAD binding domain VYA_08460 PF00520 Ion transport protein VYA_08460 PF00027 Cyclic nucleotide-binding domain VYA_08470 PF01914 MarC family integral membrane protein VYA_08480 PF00465 Iron-containing alcohol dehydrogenase VYA_08480 PF00171 Aldehyde dehydrogenase family VYA_08510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VYA_08510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VYA_08520 PF00462 Glutaredoxin VYA_08530 PF01966 HD domain VYA_08550 PF00664 ABC transporter transmembrane region VYA_08550 PF00005 ABC transporter VYA_08560 PF00529 HlyD membrane-fusion protein of T1SS VYA_08590 PF13726 Na+-H+ antiporter family VYA_08590 PF03553 Na+/H+ antiporter family VYA_08600 PF00929 Exonuclease VYA_08610 PF00691 OmpA family VYA_08610 PF18393 MotY N-terminal domain VYA_08620 PF10952 Protein of unknown function (DUF2753) VYA_08630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_08640 PF00633 Helix-hairpin-helix motif VYA_08640 PF10576 Iron-sulfur binding domain of endonuclease III VYA_08640 PF00730 HhH-GPD superfamily base excision DNA repair protein VYA_08650 PF02508 Rnf-Nqr subunit, membrane protein VYA_08660 PF04205 FMN-binding domain VYA_08670 PF03116 NQR2, RnfD, RnfE family VYA_08680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VYA_08680 PF12838 4Fe-4S dicluster domain VYA_08680 PF10531 SLBB domain VYA_08680 PF13375 RnfC Barrel sandwich hybrid domain VYA_08690 PF04060 Putative Fe-S cluster VYA_08700 PF02508 Rnf-Nqr subunit, membrane protein VYA_08710 PF02901 Pyruvate formate lyase-like VYA_08710 PF01228 Glycine radical VYA_08720 PF00271 Helicase conserved C-terminal domain VYA_08720 PF02151 UvrB/uvrC motif VYA_08720 PF12344 Ultra-violet resistance protein B VYA_08720 PF17757 UvrB interaction domain VYA_08720 PF04851 Type III restriction enzyme, res subunit VYA_08730 PF00158 Sigma-54 interaction domain VYA_08730 PF02954 Bacterial regulatory protein, Fis family VYA_08730 PF00072 Response regulator receiver domain VYA_08740 PF01627 Hpt domain VYA_08750 PF01933 Uncharacterised protein family UPF0052 VYA_08760 PF06463 Molybdenum Cofactor Synthesis C VYA_08760 PF04055 Radical SAM superfamily VYA_08770 PF00994 Probable molybdopterin binding domain VYA_08780 PF01967 MoaC family VYA_08790 PF02597 ThiS family VYA_08800 PF02391 MoaE protein VYA_08810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_08820 PF00528 Binding-protein-dependent transport system inner membrane component VYA_08830 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_08830 PF00528 Binding-protein-dependent transport system inner membrane component VYA_08840 PF00005 ABC transporter VYA_08840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_08850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_08850 PF00005 ABC transporter VYA_08860 PF13416 Bacterial extracellular solute-binding protein VYA_08870 PF00850 Histone deacetylase domain VYA_08880 PF13409 Glutathione S-transferase, N-terminal domain VYA_08890 PF13194 Domain of unknown function (DUF4010) VYA_08900 PF01515 Phosphate acetyl/butaryl transferase VYA_08900 PF07085 DRTGG domain VYA_08910 PF00871 Acetokinase family VYA_08920 PF04217 Protein of unknown function, DUF412 VYA_08940 PF02653 Branched-chain amino acid transport system / permease component VYA_08950 PF00005 ABC transporter VYA_08960 PF00128 Alpha amylase, catalytic domain VYA_08960 PF02903 Alpha amylase, N-terminal ig-like domain VYA_08980 PF00990 Diguanylate cyclase, GGDEF domain VYA_08980 PF05230 MASE2 domain VYA_08990 PF01207 Dihydrouridine synthase (Dus) VYA_09000 PF02810 SEC-C motif VYA_09000 PF03695 Uncharacterised protein family (UPF0149) VYA_09010 PF02600 Disulfide bond formation protein DsbB VYA_09020 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VYA_09030 PF07840 FadR C-terminal domain VYA_09030 PF00392 Bacterial regulatory proteins, gntR family VYA_09050 PF09334 tRNA synthetases class I (M) VYA_09050 PF01588 Putative tRNA binding domain VYA_09060 PF10609 NUBPL iron-transfer P-loop NTPase VYA_09070 PF00485 Phosphoribulokinase / Uridine kinase family VYA_09080 PF05170 AsmA family VYA_09090 PF12557 Cob(I)alamin adenosyltransferase N terminal VYA_09090 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VYA_09100 PF01451 Low molecular weight phosphotyrosine protein phosphatase VYA_09110 PF01740 STAS domain VYA_09110 PF00916 Sulfate permease family VYA_09120 PF00575 S1 RNA binding domain VYA_09120 PF12111 Polyribonucleotide phosphorylase C terminal VYA_09120 PF10150 Ribonuclease E/G family VYA_09130 PF00849 RNA pseudouridylate synthase VYA_09130 PF01479 S4 domain VYA_09140 PF02545 Maf-like protein VYA_09150 PF02620 Large ribosomal RNA subunit accumulation protein YceD VYA_09160 PF01783 Ribosomal L32p protein family VYA_09170 PF02504 Fatty acid synthesis protein VYA_09180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VYA_09180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VYA_09190 PF00698 Acyl transferase domain VYA_09210 PF00550 Phosphopantetheine attachment site VYA_09220 PF02801 Beta-ketoacyl synthase, C-terminal domain VYA_09220 PF00109 Beta-ketoacyl synthase, N-terminal domain VYA_09230 PF01063 Amino-transferase class IV VYA_09240 PF02618 YceG-like family VYA_09250 PF02223 Thymidylate kinase VYA_09260 PF09115 DNA polymerase III, delta subunit, C terminal VYA_09270 PF01026 TatD related DNase VYA_09280 PF01026 TatD related DNase VYA_09290 PF00367 phosphotransferase system, EIIB VYA_09290 PF02378 Phosphotransferase system, EIIC VYA_09320 PF01734 Patatin-like phospholipase VYA_09330 PF00224 Pyruvate kinase, barrel domain VYA_09330 PF02887 Pyruvate kinase, alpha/beta domain VYA_09340 PF00480 ROK family VYA_09350 PF01584 CheW-like domain VYA_09350 PF00072 Response regulator receiver domain VYA_09360 PF07733 Bacterial DNA polymerase III alpha NTPase domain VYA_09360 PF14579 Helix-hairpin-helix motif VYA_09360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VYA_09360 PF01336 OB-fold nucleic acid binding domain VYA_09360 PF02811 PHP domain VYA_09390 PF00106 short chain dehydrogenase VYA_09400 PF01343 Peptidase family S49 VYA_09400 PF08496 Peptidase family S49 N-terminal VYA_09410 PF02224 Cytidylate kinase VYA_09420 PF00575 S1 RNA binding domain VYA_09430 PF00216 Bacterial DNA-binding protein VYA_09440 PF06305 Lipopolysaccharide assembly protein A domain VYA_09450 PF18073 Rubredoxin metal binding domain VYA_09460 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VYA_09470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_09510 PF03886 ABC-type transport auxiliary lipoprotein component VYA_09520 PF02470 MlaD protein VYA_09530 PF04403 Paraquat-inducible protein A VYA_09540 PF00356 Bacterial regulatory proteins, lacI family VYA_09550 PF02837 Glycosyl hydrolases family 2, sugar binding domain VYA_09550 PF02929 Beta galactosidase small chain VYA_09550 PF16353 Domain of unknown function(DUF4981) VYA_09550 PF00703 Glycosyl hydrolases family 2 VYA_09550 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VYA_09570 PF02264 LamB porin VYA_09580 PF16875 Glycosyl hydrolase family 36 N-terminal domain VYA_09580 PF16874 Glycosyl hydrolase family 36 C-terminal domain VYA_09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_09600 PF03466 LysR substrate binding domain VYA_09620 PF11412 Disulphide bond corrector protein DsbC VYA_09620 PF02683 Cytochrome C biogenesis protein transmembrane region VYA_09630 PF00085 Thioredoxin VYA_09720 PF00529 HlyD membrane-fusion protein of T1SS VYA_09720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_09730 PF03466 LysR substrate binding domain VYA_09770 PF00672 HAMP domain VYA_09770 PF00512 His Kinase A (phospho-acceptor) domain VYA_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_09780 PF00486 Transcriptional regulatory protein, C terminal VYA_09780 PF00072 Response regulator receiver domain VYA_09790 PF00535 Glycosyl transferase family 2 VYA_09800 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VYA_09820 PF00672 HAMP domain VYA_09820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_09830 PF13309 HTH domain VYA_09830 PF08348 YheO-like PAS domain VYA_09840 PF01042 Endoribonuclease L-PSP VYA_09850 PF00375 Sodium:dicarboxylate symporter family VYA_09860 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_09860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VYA_09870 PF08497 Radical SAM N-terminal VYA_09870 PF04055 Radical SAM superfamily VYA_09870 PF11842 Domain of unknown function (DUF3362) VYA_09880 PF00360 Phytochrome region VYA_09880 PF00990 Diguanylate cyclase, GGDEF domain VYA_09880 PF01590 GAF domain VYA_09880 PF00563 EAL domain VYA_09910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_09910 PF03466 LysR substrate binding domain VYA_09920 PF08267 Cobalamin-independent synthase, N-terminal domain VYA_09920 PF01717 Cobalamin-independent synthase, Catalytic domain VYA_09940 PF03795 YCII-related domain VYA_09950 PF03061 Thioesterase superfamily VYA_09960 PF04279 Intracellular septation protein A VYA_09970 PF00375 Sodium:dicarboxylate symporter family VYA_09980 PF00375 Sodium:dicarboxylate symporter family VYA_09990 PF00290 Tryptophan synthase alpha chain VYA_10000 PF00291 Pyridoxal-phosphate dependent enzyme VYA_10010 PF00218 Indole-3-glycerol phosphate synthase VYA_10010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VYA_10020 PF02885 Glycosyl transferase family, helical bundle domain VYA_10020 PF00591 Glycosyl transferase family, a/b domain VYA_10030 PF00117 Glutamine amidotransferase class-I VYA_10040 PF04715 Anthranilate synthase component I, N terminal region VYA_10040 PF00425 chorismate binding enzyme VYA_10050 PF02811 PHP domain VYA_10060 PF01300 Telomere recombination VYA_10070 PF00849 RNA pseudouridylate synthase VYA_10070 PF01479 S4 domain VYA_10080 PF04269 Protein of unknown function, DUF440 VYA_10090 PF01132 Elongation factor P (EF-P) OB domain VYA_10090 PF08207 Elongation factor P (EF-P) KOW-like domain VYA_10090 PF09285 Elongation factor P, C-terminal VYA_10110 PF00136 DNA polymerase family B VYA_10110 PF03104 DNA polymerase family B, exonuclease domain VYA_10130 PF00072 Response regulator receiver domain VYA_10130 PF00196 Bacterial regulatory proteins, luxR family VYA_10140 PF08459 UvrC Helix-hairpin-helix N-terminal VYA_10140 PF02151 UvrB/uvrC motif VYA_10140 PF01541 GIY-YIG catalytic domain VYA_10150 PF01066 CDP-alcohol phosphatidyltransferase VYA_10160 PF00202 Aminotransferase class-III VYA_10170 PF03435 Saccharopine dehydrogenase NADP binding domain VYA_10170 PF16653 Saccharopine dehydrogenase C-terminal domain VYA_10180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VYA_10190 PF02153 Prephenate dehydrogenase VYA_10190 PF01842 ACT domain VYA_10210 PF00994 Probable molybdopterin binding domain VYA_10230 PF00268 Ribonucleotide reductase, small chain VYA_10240 PF00317 Ribonucleotide reductase, all-alpha domain VYA_10240 PF03477 ATP cone domain VYA_10240 PF02867 Ribonucleotide reductase, barrel domain VYA_10260 PF03989 DNA gyrase C-terminal domain, beta-propeller VYA_10260 PF00521 DNA gyrase/topoisomerase IV, subunit A VYA_10300 PF00925 GTP cyclohydrolase II VYA_10310 PF01471 Putative peptidoglycan binding domain VYA_10310 PF03734 L,D-transpeptidase catalytic domain VYA_10320 PF05951 Bacterial protein of unknown function (DUF882) VYA_10330 PF00753 Metallo-beta-lactamase superfamily VYA_10360 PF03480 Bacterial extracellular solute-binding protein, family 7 VYA_10380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VYA_10390 PF17200 Single Cache domain 2 VYA_10390 PF07730 Histidine kinase VYA_10400 PF00072 Response regulator receiver domain VYA_10400 PF00196 Bacterial regulatory proteins, luxR family VYA_10420 PF02028 BCCT, betaine/carnitine/choline family transporter VYA_10430 PF02743 Cache domain VYA_10430 PF00672 HAMP domain VYA_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_10440 PF14579 Helix-hairpin-helix motif VYA_10440 PF02811 PHP domain VYA_10440 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VYA_10440 PF07733 Bacterial DNA polymerase III alpha NTPase domain VYA_10440 PF11490 DNA polymerase III polC-type N-terminus II VYA_10440 PF14480 DNA polymerase III polC-type N-terminus I VYA_10440 PF00929 Exonuclease VYA_10470 PF00155 Aminotransferase class I and II VYA_10500 PF00152 tRNA synthetases class II (D, K and N) VYA_10500 PF01336 OB-fold nucleic acid binding domain VYA_10510 PF01242 6-pyruvoyl tetrahydropterin synthase VYA_10530 PF03315 Serine dehydratase beta chain VYA_10530 PF03313 Serine dehydratase alpha chain VYA_10540 PF03222 Tryptophan/tyrosine permease family VYA_10550 PF00293 NUDIX domain VYA_10560 PF00425 chorismate binding enzyme VYA_10560 PF04715 Anthranilate synthase component I, N terminal region VYA_10590 PF04317 YcjX-like family, DUF463 VYA_10600 PF05128 Domain of unknown function (DUF697) VYA_10610 PF18024 Helix-turn-helix domain VYA_10610 PF00158 Sigma-54 interaction domain VYA_10620 PF13302 Acetyltransferase (GNAT) domain VYA_10650 PF00589 Phage integrase family VYA_10650 PF13495 Phage integrase, N-terminal SAM-like domain VYA_10730 PF08378 Nuclease-related domain VYA_10800 PF04266 ASCH domain VYA_10820 PF04266 ASCH domain VYA_10940 PF13649 Methyltransferase domain VYA_11090 PF13649 Methyltransferase domain VYA_11130 PF00293 NUDIX domain VYA_11190 PF00665 Integrase core domain VYA_11190 PF13333 Integrase core domain VYA_11190 PF13276 HTH-like domain VYA_11200 PF01527 Transposase VYA_11390 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VYA_11400 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VYA_11420 PF13091 PLD-like domain VYA_11510 PF00293 NUDIX domain VYA_11540 PF00665 Integrase core domain VYA_11540 PF13333 Integrase core domain VYA_11540 PF13276 HTH-like domain VYA_11550 PF01527 Transposase VYA_11600 PF04266 ASCH domain VYA_11740 PF00583 Acetyltransferase (GNAT) family VYA_11760 PF00939 Sodium:sulfate symporter transmembrane region VYA_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_11770 PF00512 His Kinase A (phospho-acceptor) domain VYA_11770 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_11780 PF02954 Bacterial regulatory protein, Fis family VYA_11780 PF00072 Response regulator receiver domain VYA_11780 PF00158 Sigma-54 interaction domain VYA_11790 PF00563 EAL domain VYA_11790 PF00990 Diguanylate cyclase, GGDEF domain VYA_11800 PF11871 Domain of unknown function (DUF3391) VYA_11800 PF01966 HD domain VYA_11810 PF01810 LysE type translocator VYA_11820 PF11230 Protein of unknown function (DUF3029) VYA_11830 PF04055 Radical SAM superfamily VYA_11840 PF03466 LysR substrate binding domain VYA_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_11850 PF03741 Integral membrane protein TerC family VYA_11870 PF00465 Iron-containing alcohol dehydrogenase VYA_11880 PF03222 Tryptophan/tyrosine permease family VYA_11890 PF00072 Response regulator receiver domain VYA_11920 PF00664 ABC transporter transmembrane region VYA_11920 PF00005 ABC transporter VYA_11930 PF00005 ABC transporter VYA_11930 PF00664 ABC transporter transmembrane region VYA_11960 PF00012 Hsp70 protein VYA_11970 PF00012 Hsp70 protein VYA_11990 PF00990 Diguanylate cyclase, GGDEF domain VYA_12010 PF00216 Bacterial DNA-binding protein VYA_12030 PF05724 Thiopurine S-methyltransferase (TPMT) VYA_12040 PF02222 ATP-grasp domain VYA_12050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VYA_12050 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VYA_12060 PF04172 LrgB-like family VYA_12070 PF03788 LrgA family VYA_12080 PF08411 Exonuclease C-terminal VYA_12080 PF00929 Exonuclease VYA_12090 PF13460 NAD(P)H-binding VYA_12100 PF02277 Phosphoribosyltransferase VYA_12110 PF02654 Cobalamin-5-phosphate synthase VYA_12120 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VYA_12150 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VYA_12160 PF01032 FecCD transport family VYA_12170 PF00005 ABC transporter VYA_12190 PF04204 Homoserine O-succinyltransferase VYA_12210 PF00893 Small Multidrug Resistance protein VYA_12220 PF13520 Amino acid permease VYA_12230 PF01810 LysE type translocator VYA_12240 PF03279 Bacterial lipid A biosynthesis acyltransferase VYA_12250 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VYA_12260 PF01810 LysE type translocator VYA_12270 PF01235 Sodium:alanine symporter family VYA_12330 PF07690 Major Facilitator Superfamily VYA_12340 PF03466 LysR substrate binding domain VYA_12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_12360 PF01863 Protein of unknown function DUF45 VYA_12370 PF05971 RNA methyltransferase VYA_12380 PF00512 His Kinase A (phospho-acceptor) domain VYA_12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_12380 PF09456 RcsC Alpha-Beta-Loop (ABL) VYA_12380 PF00072 Response regulator receiver domain VYA_12390 PF00072 Response regulator receiver domain VYA_12390 PF00990 Diguanylate cyclase, GGDEF domain VYA_12410 PF00392 Bacterial regulatory proteins, gntR family VYA_12420 PF00171 Aldehyde dehydrogenase family VYA_12430 PF05544 Proline racemase VYA_12440 PF01593 Flavin containing amine oxidoreductase VYA_12460 PF02423 Ornithine cyclodeaminase/mu-crystallin family VYA_12470 PF00701 Dihydrodipicolinate synthetase family VYA_12480 PF00005 ABC transporter VYA_12480 PF08402 TOBE domain VYA_12490 PF00528 Binding-protein-dependent transport system inner membrane component VYA_12500 PF00528 Binding-protein-dependent transport system inner membrane component VYA_12540 PF07690 Major Facilitator Superfamily VYA_12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_12610 PF03466 LysR substrate binding domain VYA_12650 PF13533 Biotin-lipoyl like VYA_12710 PF07687 Peptidase dimerisation domain VYA_12710 PF01546 Peptidase family M20/M25/M40 VYA_12740 PF07969 Amidohydrolase family VYA_12820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_12830 PF04209 homogentisate 1,2-dioxygenase VYA_12850 PF14497 Glutathione S-transferase, C-terminal domain VYA_12850 PF02798 Glutathione S-transferase, N-terminal domain VYA_12930 PF00072 Response regulator receiver domain VYA_12930 PF00196 Bacterial regulatory proteins, luxR family VYA_12950 PF02397 Bacterial sugar transferase VYA_12970 PF00534 Glycosyl transferases group 1 VYA_12970 PF13439 Glycosyltransferase Family 4 VYA_12980 PF13614 AAA domain VYA_12980 PF02706 Chain length determinant protein VYA_12980 PF13807 G-rich domain on putative tyrosine kinase VYA_13000 PF12464 Maltose acetyltransferase VYA_13000 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_13060 PF02954 Bacterial regulatory protein, Fis family VYA_13060 PF00072 Response regulator receiver domain VYA_13060 PF00158 Sigma-54 interaction domain VYA_13110 PF01740 STAS domain VYA_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_13120 PF00512 His Kinase A (phospho-acceptor) domain VYA_13120 PF09308 LuxQ, periplasmic VYA_13120 PF00072 Response regulator receiver domain VYA_13140 PF00582 Universal stress protein family VYA_13150 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VYA_13160 PF00924 Mechanosensitive ion channel VYA_13170 PF03729 Short repeat of unknown function (DUF308) VYA_13180 PF00892 EamA-like transporter family VYA_13210 PF12464 Maltose acetyltransferase VYA_13210 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_13220 PF13322 Domain of unknown function (DUF4092) VYA_13220 PF17291 N-terminal domain of M60-like peptidases VYA_13220 PF13402 Peptidase M60, enhancin and enhancin-like VYA_13260 PF01554 MatE VYA_13270 PF00677 Lumazine binding domain VYA_13290 PF03881 Fructosamine kinase VYA_13300 PF01339 CheB methylesterase VYA_13300 PF00072 Response regulator receiver domain VYA_13310 PF05230 MASE2 domain VYA_13310 PF00990 Diguanylate cyclase, GGDEF domain VYA_13330 PF00877 NlpC/P60 family VYA_13360 PF03942 DTW domain VYA_13370 PF00480 ROK family VYA_13390 PF00994 Probable molybdopterin binding domain VYA_13390 PF03454 MoeA C-terminal region (domain IV) VYA_13390 PF03453 MoeA N-terminal region (domain I and II) VYA_13400 PF12804 MobA-like NTP transferase domain VYA_13410 PF00005 ABC transporter VYA_13410 PF08402 TOBE domain VYA_13420 PF00528 Binding-protein-dependent transport system inner membrane component VYA_13430 PF12849 PBP superfamily domain VYA_13440 PF02954 Bacterial regulatory protein, Fis family VYA_13440 PF00072 Response regulator receiver domain VYA_13440 PF00158 Sigma-54 interaction domain VYA_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_13450 PF00512 His Kinase A (phospho-acceptor) domain VYA_13490 PF00005 ABC transporter VYA_13490 PF12848 ABC transporter VYA_13500 PF02634 FdhD/NarQ family VYA_13540 PF02613 Nitrate reductase delta subunit VYA_13560 PF00384 Molybdopterin oxidoreductase VYA_13560 PF01568 Molydopterin dinucleotide binding domain VYA_13560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VYA_13570 PF13247 4Fe-4S dicluster domain VYA_13600 PF02146 Sir2 family VYA_13610 PF13416 Bacterial extracellular solute-binding protein VYA_13620 PF13416 Bacterial extracellular solute-binding protein VYA_13630 PF00528 Binding-protein-dependent transport system inner membrane component VYA_13640 PF00528 Binding-protein-dependent transport system inner membrane component VYA_13650 PF00005 ABC transporter VYA_13650 PF08402 TOBE domain VYA_13690 PF01171 PP-loop family VYA_13700 PF00582 Universal stress protein family VYA_13710 PF00027 Cyclic nucleotide-binding domain VYA_13710 PF13545 Crp-like helix-turn-helix domain VYA_13740 PF00403 Heavy-metal-associated domain VYA_13760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VYA_13760 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VYA_13790 PF00115 Cytochrome C and Quinol oxidase polypeptide I VYA_13820 PF00072 Response regulator receiver domain VYA_13820 PF09308 LuxQ, periplasmic VYA_13820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_13820 PF00512 His Kinase A (phospho-acceptor) domain VYA_13860 PF06303 MatP N-terminal domain VYA_13860 PF17414 MatP C-terminal ribbon-helix-helix domain VYA_13870 PF13654 AAA domain VYA_13870 PF05362 Lon protease (S16) C-terminal proteolytic domain VYA_13880 PF07977 FabA-like domain VYA_13890 PF04957 Ribosome modulation factor VYA_13910 PF00005 ABC transporter VYA_13910 PF16326 ABC transporter C-terminal domain VYA_13910 PF12848 ABC transporter VYA_13930 PF10672 S-adenosylmethionine-dependent methyltransferase VYA_13930 PF02926 THUMP domain VYA_13930 PF01170 Putative RNA methylase family UPF0020 VYA_13940 PF07126 Cell-division protein ZapC VYA_13950 PF01180 Dihydroorotate dehydrogenase VYA_13960 PF05088 Bacterial NAD-glutamate dehydrogenase VYA_13970 PF11940 Domain of unknown function (DUF3458) Ig-like fold VYA_13970 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VYA_13970 PF01433 Peptidase family M1 domain VYA_13990 PF17804 Tail specific protease N-terminal domain VYA_13990 PF03572 Peptidase family S41 VYA_13990 PF11818 C-terminal domain of tail specific protease (DUF3340) VYA_13990 PF00595 PDZ domain VYA_14000 PF04352 ProQ/FINO family VYA_14000 PF17516 ProQ C-terminal domain VYA_14010 PF13185 GAF domain VYA_14020 PF00664 ABC transporter transmembrane region VYA_14020 PF00005 ABC transporter VYA_14030 PF04403 Paraquat-inducible protein A VYA_14040 PF02470 MlaD protein VYA_14050 PF01189 16S rRNA methyltransferase RsmB/F VYA_14050 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VYA_14050 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VYA_14090 PF00793 DAHP synthetase I family VYA_14100 PF04461 Protein of unknown function (DUF520) VYA_14110 PF14824 Sirohaem biosynthesis protein central VYA_14110 PF10414 Sirohaem synthase dimerisation region VYA_14110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VYA_14120 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_14130 PF00528 Binding-protein-dependent transport system inner membrane component VYA_14140 PF00528 Binding-protein-dependent transport system inner membrane component VYA_14150 PF00005 ABC transporter VYA_14160 PF01027 Inhibitor of apoptosis-promoting Bax1 VYA_14170 PF04358 DsrC like protein VYA_14180 PF00708 Acylphosphatase VYA_14190 PF12729 Four helix bundle sensory module for signal transduction VYA_14190 PF00672 HAMP domain VYA_14190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_14200 PF17785 PUA-like domain VYA_14200 PF10672 S-adenosylmethionine-dependent methyltransferase VYA_14250 PF00990 Diguanylate cyclase, GGDEF domain VYA_14260 PF06508 Queuosine biosynthesis protein QueC VYA_14270 PF04055 Radical SAM superfamily VYA_14310 PF00501 AMP-binding enzyme VYA_14310 PF16177 Acetyl-coenzyme A synthetase N-terminus VYA_14310 PF13193 AMP-binding enzyme C-terminal domain VYA_14320 PF04303 PrpF protein VYA_14330 PF00330 Aconitase family (aconitate hydratase) VYA_14330 PF00694 Aconitase C-terminal domain VYA_14340 PF00285 Citrate synthase, C-terminal domain VYA_14360 PF00392 Bacterial regulatory proteins, gntR family VYA_14360 PF07729 FCD domain VYA_14400 PF01925 Sulfite exporter TauE/SafE VYA_14410 PF16868 NMT1-like family VYA_14420 PF00873 AcrB/AcrD/AcrF family VYA_14430 PF00529 HlyD membrane-fusion protein of T1SS VYA_14430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_14440 PF00171 Aldehyde dehydrogenase family VYA_14450 PF00158 Sigma-54 interaction domain VYA_14450 PF02954 Bacterial regulatory protein, Fis family VYA_14450 PF01590 GAF domain VYA_14520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VYA_14520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VYA_14530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VYA_14540 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VYA_14540 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VYA_14570 PF13533 Biotin-lipoyl like VYA_14600 PF05368 NmrA-like family VYA_14610 PF03466 LysR substrate binding domain VYA_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_14630 PF00696 Amino acid kinase family VYA_14630 PF13840 ACT domain VYA_14640 PF06339 Ectoine synthase VYA_14650 PF00202 Aminotransferase class-III VYA_14660 PF00583 Acetyltransferase (GNAT) family VYA_14670 PF02028 BCCT, betaine/carnitine/choline family transporter VYA_14700 PF00571 CBS domain VYA_14700 PF00005 ABC transporter VYA_14710 PF00528 Binding-protein-dependent transport system inner membrane component VYA_14720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VYA_14730 PF01554 MatE VYA_14750 PF00271 Helicase conserved C-terminal domain VYA_14750 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VYA_14750 PF04408 Helicase associated domain (HA2) VYA_14750 PF11898 Domain of unknown function (DUF3418) VYA_14750 PF00270 DEAD/DEAH box helicase VYA_14760 PF02525 Flavodoxin-like fold VYA_14770 PF08329 Chitinase A, N-terminal domain VYA_14770 PF00704 Glycosyl hydrolases family 18 VYA_14820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VYA_14820 PF03484 tRNA synthetase B5 domain VYA_14820 PF03483 B3/4 domain VYA_14820 PF01588 Putative tRNA binding domain VYA_14820 PF03147 Ferredoxin-fold anticodon binding domain VYA_14830 PF01409 tRNA synthetases class II core domain (F) VYA_14830 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VYA_14850 PF01906 Putative heavy-metal-binding VYA_14860 PF00453 Ribosomal protein L20 VYA_14870 PF01632 Ribosomal protein L35 VYA_14880 PF00707 Translation initiation factor IF-3, C-terminal domain VYA_14880 PF05198 Translation initiation factor IF-3, N-terminal domain VYA_14890 PF03129 Anticodon binding domain VYA_14890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VYA_14890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VYA_14890 PF02824 TGS domain VYA_14930 PF13402 Peptidase M60, enhancin and enhancin-like VYA_14930 PF13322 Domain of unknown function (DUF4092) VYA_14930 PF17291 N-terminal domain of M60-like peptidases VYA_14940 PF00563 EAL domain VYA_14940 PF08495 FIST N domain VYA_14940 PF00990 Diguanylate cyclase, GGDEF domain VYA_14940 PF10442 FIST C domain VYA_15090 PF00990 Diguanylate cyclase, GGDEF domain VYA_15090 PF17158 Membrane-associated sensor, integral membrane domain VYA_15100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_15100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_15100 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_15130 PF07702 UTRA domain VYA_15130 PF00392 Bacterial regulatory proteins, gntR family VYA_15140 PF01979 Amidohydrolase family VYA_15150 PF00491 Arginase family VYA_15160 PF17391 Urocanase N-terminal domain VYA_15160 PF17392 Urocanase C-terminal domain VYA_15160 PF01175 Urocanase Rossmann-like domain VYA_15170 PF00221 Aromatic amino acid lyase VYA_15200 PF13183 4Fe-4S dicluster domain VYA_15200 PF02913 FAD linked oxidases, C-terminal domain VYA_15200 PF01565 FAD binding domain VYA_15230 PF00691 OmpA family VYA_15230 PF05736 OprF membrane domain VYA_15270 PF01259 SAICAR synthetase VYA_15290 PF11898 Domain of unknown function (DUF3418) VYA_15290 PF04408 Helicase associated domain (HA2) VYA_15290 PF00271 Helicase conserved C-terminal domain VYA_15290 PF00270 DEAD/DEAH box helicase VYA_15290 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VYA_15300 PF00390 Malic enzyme, N-terminal domain VYA_15300 PF03949 Malic enzyme, NAD binding domain VYA_15310 PF02698 DUF218 domain VYA_15320 PF00939 Sodium:sulfate symporter transmembrane region VYA_15330 PF08448 PAS fold VYA_15330 PF00990 Diguanylate cyclase, GGDEF domain VYA_15350 PF00266 Aminotransferase class-V VYA_15370 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_15380 PF00005 ABC transporter VYA_15380 PF00664 ABC transporter transmembrane region VYA_15390 PF00664 ABC transporter transmembrane region VYA_15390 PF00005 ABC transporter VYA_15420 PF07694 5TMR of 5TMR-LYT VYA_15420 PF00990 Diguanylate cyclase, GGDEF domain VYA_15440 PF00266 Aminotransferase class-V VYA_15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_15460 PF00512 His Kinase A (phospho-acceptor) domain VYA_15460 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_15490 PF04993 TfoX N-terminal domain VYA_15490 PF04994 TfoX C-terminal domain VYA_15510 PF03956 Lysine exporter LysO VYA_15530 PF00282 Pyridoxal-dependent decarboxylase conserved domain VYA_15540 PF01380 SIS domain VYA_15540 PF01418 Helix-turn-helix domain, rpiR family VYA_15550 PF00465 Iron-containing alcohol dehydrogenase VYA_15560 PF00462 Glutaredoxin VYA_15570 PF02080 TrkA-C domain VYA_15570 PF06826 Predicted Permease Membrane Region VYA_15590 PF12241 Trans-2-enoyl-CoA reductase catalytic region VYA_15590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VYA_15590 PF07055 Enoyl reductase FAD binding domain VYA_15600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_15600 PF09317 Domain of unknown function (DUF1974) VYA_15600 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_15600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_15610 PF00440 Bacterial regulatory proteins, tetR family VYA_15610 PF16295 Tetracyclin repressor-like, C-terminal domain VYA_15620 PF06965 Na+/H+ antiporter 1 VYA_15650 PF00005 ABC transporter VYA_15660 PF01554 MatE VYA_15670 PF11066 Protein of unknown function (DUF2867) VYA_15670 PF13460 NAD(P)H-binding VYA_15680 PF00356 Bacterial regulatory proteins, lacI family VYA_15690 PF16874 Glycosyl hydrolase family 36 C-terminal domain VYA_15690 PF16875 Glycosyl hydrolase family 36 N-terminal domain VYA_15700 PF00474 Sodium:solute symporter family VYA_15720 PF07690 Major Facilitator Superfamily VYA_15730 PF01479 S4 domain VYA_15730 PF00849 RNA pseudouridylate synthase VYA_15740 PF00271 Helicase conserved C-terminal domain VYA_15740 PF04851 Type III restriction enzyme, res subunit VYA_15760 PF00486 Transcriptional regulatory protein, C terminal VYA_15760 PF00072 Response regulator receiver domain VYA_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_15780 PF01386 Ribosomal L25p family VYA_15790 PF02872 5'-nucleotidase, C-terminal domain VYA_15790 PF00149 Calcineurin-like phosphoesterase VYA_15820 PF00196 Bacterial regulatory proteins, luxR family VYA_15820 PF00072 Response regulator receiver domain VYA_15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_15830 PF00512 His Kinase A (phospho-acceptor) domain VYA_15850 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_15850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VYA_15870 PF09335 SNARE associated Golgi protein VYA_15880 PF13416 Bacterial extracellular solute-binding protein VYA_15890 PF00528 Binding-protein-dependent transport system inner membrane component VYA_15900 PF00005 ABC transporter VYA_15910 PF01066 CDP-alcohol phosphatidyltransferase VYA_15930 PF00158 Sigma-54 interaction domain VYA_15930 PF01590 GAF domain VYA_15940 PF03063 Prismane/CO dehydrogenase family VYA_15950 PF00042 Globin VYA_15950 PF00175 Oxidoreductase NAD-binding domain VYA_15950 PF00970 Oxidoreductase FAD-binding domain VYA_15970 PF00849 RNA pseudouridylate synthase VYA_15980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_15980 PF12729 Four helix bundle sensory module for signal transduction VYA_15980 PF00672 HAMP domain VYA_15990 PF00209 Sodium:neurotransmitter symporter family VYA_16000 PF13091 PLD-like domain VYA_16000 PF13396 Phospholipase_D-nuclease N-terminal VYA_16010 PF01053 Cys/Met metabolism PLP-dependent enzyme VYA_16020 PF03352 Methyladenine glycosylase VYA_16030 PF00873 AcrB/AcrD/AcrF family VYA_16040 PF13533 Biotin-lipoyl like VYA_16050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_16080 PF06667 Phage shock protein B VYA_16090 PF04012 PspA/IM30 family VYA_16100 PF00158 Sigma-54 interaction domain VYA_16100 PF02954 Bacterial regulatory protein, Fis family VYA_16110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_16120 PF00528 Binding-protein-dependent transport system inner membrane component VYA_16130 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_16130 PF00528 Binding-protein-dependent transport system inner membrane component VYA_16140 PF00005 ABC transporter VYA_16140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_16150 PF00005 ABC transporter VYA_16170 PF01368 DHH family VYA_16170 PF02833 DHHA2 domain VYA_16190 PF16875 Glycosyl hydrolase family 36 N-terminal domain VYA_16190 PF16874 Glycosyl hydrolase family 36 C-terminal domain VYA_16200 PF01568 Molydopterin dinucleotide binding domain VYA_16200 PF00384 Molybdopterin oxidoreductase VYA_16200 PF18364 Molybdopterin oxidoreductase N-terminal domain VYA_16210 PF03264 NapC/NirT cytochrome c family, N-terminal region VYA_16220 PF06796 Periplasmic nitrate reductase protein NapE VYA_16230 PF03649 Uncharacterised protein family (UPF0014) VYA_16250 PF01226 Formate/nitrite transporter VYA_16300 PF02698 DUF218 domain VYA_16320 PF00265 Thymidine kinase VYA_16330 PF01406 tRNA synthetases class I (C) catalytic domain VYA_16330 PF09190 DALR domain VYA_16340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VYA_16350 PF00149 Calcineurin-like phosphoesterase VYA_16360 PF00563 EAL domain VYA_16360 PF08668 HDOD domain VYA_16370 PF02810 SEC-C motif VYA_16380 PF01502 Phosphoribosyl-AMP cyclohydrolase VYA_16380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VYA_16390 PF00977 Histidine biosynthesis protein VYA_16400 PF00977 Histidine biosynthesis protein VYA_16410 PF00117 Glutamine amidotransferase class-I VYA_16420 PF00475 Imidazoleglycerol-phosphate dehydratase VYA_16420 PF08645 Polynucleotide kinase 3 phosphatase VYA_16430 PF00155 Aminotransferase class I and II VYA_16440 PF00815 Histidinol dehydrogenase VYA_16450 PF08029 HisG, C-terminal domain VYA_16450 PF01634 ATP phosphoribosyltransferase VYA_16470 PF03553 Na+/H+ antiporter family VYA_16480 PF00816 H-NS histone family VYA_16490 PF00294 pfkB family carbohydrate kinase VYA_16520 PF04356 Protein of unknown function (DUF489) VYA_16530 PF08328 Adenylosuccinate lyase C-terminal VYA_16530 PF00206 Lyase VYA_16550 PF16036 Chalcone isomerase-like VYA_16610 PF00106 short chain dehydrogenase VYA_16630 PF01435 Peptidase family M48 VYA_16660 PF08241 Methyltransferase domain VYA_16670 PF00155 Aminotransferase class I and II VYA_16680 PF06968 Biotin and Thiamin Synthesis associated domain VYA_16680 PF04055 Radical SAM superfamily VYA_16690 PF00202 Aminotransferase class-III VYA_16700 PF01258 Prokaryotic dksA/traR C4-type zinc finger VYA_16710 PF02403 Seryl-tRNA synthetase N-terminal domain VYA_16710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VYA_16720 PF00004 ATPase family associated with various cellular activities (AAA) VYA_16720 PF16193 AAA C-terminal domain VYA_16720 PF12002 MgsA AAA+ ATPase C terminal VYA_16730 PF03548 Outer membrane lipoprotein carrier protein LolA VYA_16740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VYA_16740 PF01580 FtsK/SpoIIIE family VYA_16740 PF09397 Ftsk gamma domain VYA_16740 PF17854 FtsK alpha domain VYA_16750 PF01037 Lrp/AsnC ligand binding domain VYA_16760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VYA_16760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VYA_16780 PF03466 LysR substrate binding domain VYA_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_16800 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VYA_16810 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VYA_16810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VYA_16820 PF07859 alpha/beta hydrolase fold VYA_16850 PF01081 KDPG and KHG aldolase VYA_16860 PF00294 pfkB family carbohydrate kinase VYA_16870 PF07883 Cupin domain VYA_16880 PF05426 Alginate lyase VYA_16880 PF07940 Heparinase II/III-like protein VYA_16890 PF07940 Heparinase II/III-like protein VYA_16890 PF05426 Alginate lyase VYA_16900 PF04074 YhcH/YjgK/YiaL VYA_16910 PF01554 MatE VYA_16920 PF00392 Bacterial regulatory proteins, gntR family VYA_16920 PF07729 FCD domain VYA_16930 PF00392 Bacterial regulatory proteins, gntR family VYA_16930 PF07729 FCD domain VYA_16940 PF00571 CBS domain VYA_16950 PF00929 Exonuclease VYA_16950 PF07733 Bacterial DNA polymerase III alpha NTPase domain VYA_16950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VYA_16950 PF14579 Helix-hairpin-helix motif VYA_16950 PF02811 PHP domain VYA_17000 PF00474 Sodium:solute symporter family VYA_17050 PF00873 AcrB/AcrD/AcrF family VYA_17060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_17060 PF00529 HlyD membrane-fusion protein of T1SS VYA_17080 PF03831 PhnA domain VYA_17080 PF08274 PhnA Zinc-Ribbon VYA_17150 PF09382 RQC domain VYA_17150 PF16124 RecQ zinc-binding VYA_17150 PF00270 DEAD/DEAH box helicase VYA_17150 PF00271 Helicase conserved C-terminal domain VYA_17150 PF00570 HRDC domain VYA_17190 PF00270 DEAD/DEAH box helicase VYA_17190 PF00271 Helicase conserved C-terminal domain VYA_17200 PF18337 RapA N-terminal Tudor like domain VYA_17200 PF18339 RapA N-terminal Tudor like domain 1 VYA_17200 PF00271 Helicase conserved C-terminal domain VYA_17200 PF12137 RNA polymerase recycling family C-terminal VYA_17200 PF00176 SNF2 family N-terminal domain VYA_17210 PF01227 GTP cyclohydrolase I VYA_17220 PF06508 Queuosine biosynthesis protein QueC VYA_17230 PF04055 Radical SAM superfamily VYA_17340 PF03848 Tellurite resistance protein TehB VYA_17340 PF09313 Domain of unknown function (DUF1971) VYA_17380 PF03747 ADP-ribosylglycohydrolase VYA_17400 PF04851 Type III restriction enzyme, res subunit VYA_17400 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VYA_17400 PF00271 Helicase conserved C-terminal domain VYA_17400 PF08463 EcoEI R protein C-terminal VYA_17530 PF00589 Phage integrase family VYA_17530 PF13356 Arm DNA-binding domain VYA_17540 PF06610 L-alanine exporter VYA_17550 PF00512 His Kinase A (phospho-acceptor) domain VYA_17550 PF09308 LuxQ, periplasmic VYA_17550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_17550 PF00072 Response regulator receiver domain VYA_17580 PF02445 Quinolinate synthetase A protein VYA_17590 PF16331 TolA binding protein trimerisation VYA_17590 PF13174 Tetratricopeptide repeat VYA_17600 PF00691 OmpA family VYA_17610 PF04052 TolB amino-terminal domain VYA_17610 PF07676 WD40-like Beta Propeller Repeat VYA_17630 PF02472 Biopolymer transport protein ExbD/TolR VYA_17640 PF01618 MotA/TolQ/ExbB proton channel family VYA_17650 PF03061 Thioesterase superfamily VYA_17670 PF02322 Cytochrome bd terminal oxidase subunit II VYA_17680 PF01654 Cytochrome bd terminal oxidase subunit I VYA_17690 PF05496 Holliday junction DNA helicase RuvB P-loop domain VYA_17690 PF05491 RuvB C-terminal winged helix domain VYA_17690 PF17864 RuvB AAA lid domain VYA_17700 PF01330 RuvA N terminal domain VYA_17700 PF07499 RuvA, C-terminal domain VYA_17710 PF02075 Crossover junction endodeoxyribonuclease RuvC VYA_17720 PF01336 OB-fold nucleic acid binding domain VYA_17720 PF00152 tRNA synthetases class II (D, K and N) VYA_17720 PF02938 GAD domain VYA_17730 PF01904 Protein of unknown function DUF72 VYA_17740 PF13649 Methyltransferase domain VYA_17750 PF08003 Protein of unknown function (DUF1698) VYA_17760 PF08443 RimK-like ATP-grasp domain VYA_17760 PF18030 RimK PreATP-grasp domain VYA_17800 PF00356 Bacterial regulatory proteins, lacI family VYA_17810 PF13416 Bacterial extracellular solute-binding protein VYA_17820 PF00528 Binding-protein-dependent transport system inner membrane component VYA_17830 PF00528 Binding-protein-dependent transport system inner membrane component VYA_17840 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VYA_17840 PF00703 Glycosyl hydrolases family 2 VYA_17840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VYA_17840 PF02837 Glycosyl hydrolases family 2, sugar binding domain VYA_17850 PF00005 ABC transporter VYA_17850 PF17912 MalK OB fold domain VYA_17860 PF07745 Glycosyl hydrolase family 53 VYA_17870 PF13737 Transposase DDE domain VYA_17880 PF04310 MukB N-terminal VYA_17880 PF16330 MukB hinge domain VYA_17890 PF04288 MukE-like family VYA_17900 PF17193 MukF C-terminal domain VYA_17900 PF17192 MukF middle domain VYA_17900 PF03882 MukF winged-helix domain VYA_17910 PF13847 Methyltransferase domain VYA_17920 PF02698 DUF218 domain VYA_17930 PF00486 Transcriptional regulatory protein, C terminal VYA_17930 PF00072 Response regulator receiver domain VYA_17940 PF02613 Nitrate reductase delta subunit VYA_17950 PF00356 Bacterial regulatory proteins, lacI family VYA_17960 PF04993 TfoX N-terminal domain VYA_17960 PF04994 TfoX C-terminal domain VYA_18000 PF00534 Glycosyl transferases group 1 VYA_18000 PF08323 Starch synthase catalytic domain VYA_18010 PF00483 Nucleotidyl transferase VYA_18030 PF01396 Topoisomerase DNA binding C4 zinc finger VYA_18030 PF08272 Topoisomerase I zinc-ribbon-like VYA_18030 PF01131 DNA topoisomerase VYA_18030 PF01751 Toprim domain VYA_18040 PF10692 Protein of unknown function (DUF2498) VYA_18050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VYA_18070 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VYA_18080 PF04377 Arginine-tRNA-protein transferase, C terminus VYA_18080 PF04376 Arginine-tRNA-protein transferase, N terminus VYA_18090 PF01176 Translation initiation factor 1A / IF-1 VYA_18100 PF00004 ATPase family associated with various cellular activities (AAA) VYA_18100 PF07724 AAA domain (Cdc48 subfamily) VYA_18100 PF02861 Clp amino terminal domain, pathogenicity island component VYA_18100 PF10431 C-terminal, D2-small domain, of ClpB protein VYA_18100 PF17871 AAA lid domain VYA_18110 PF02617 ATP-dependent Clp protease adaptor protein ClpS VYA_18120 PF00313 'Cold-shock' DNA-binding domain VYA_18130 PF03971 Monomeric isocitrate dehydrogenase VYA_18140 PF00849 RNA pseudouridylate synthase VYA_18150 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VYA_18170 PF06733 DEAD_2 VYA_18170 PF13307 Helicase C-terminal domain VYA_18180 PF01925 Sulfite exporter TauE/SafE VYA_18190 PF07445 Primosomal replication protein priC VYA_18200 PF10689 Protein of unknown function (DUF2496) VYA_18210 PF03372 Endonuclease/Exonuclease/phosphatase family VYA_18220 PF00528 Binding-protein-dependent transport system inner membrane component VYA_18230 PF00528 Binding-protein-dependent transport system inner membrane component VYA_18240 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_18250 PF00005 ABC transporter VYA_18280 PF02901 Pyruvate formate lyase-like VYA_18280 PF01228 Glycine radical VYA_18300 PF04055 Radical SAM superfamily VYA_18320 PF03887 YfbU domain VYA_18330 PF06798 PrkA serine protein kinase C-terminal domain VYA_18330 PF08298 PrkA AAA domain VYA_18340 PF04285 Protein of unknown function (DUF444) VYA_18350 PF04285 Protein of unknown function (DUF444) VYA_18360 PF04293 SpoVR like protein VYA_18370 PF02348 Cytidylyltransferase VYA_18380 PF03966 Trm112p-like protein VYA_18390 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VYA_18400 PF00005 ABC transporter VYA_18400 PF00664 ABC transporter transmembrane region VYA_18410 PF00753 Metallo-beta-lactamase superfamily VYA_18410 PF03772 Competence protein VYA_18430 PF12704 MacB-like periplasmic core domain VYA_18430 PF02687 FtsX-like permease family VYA_18440 PF00005 ABC transporter VYA_18450 PF12704 MacB-like periplasmic core domain VYA_18450 PF02687 FtsX-like permease family VYA_18470 PF17757 UvrB interaction domain VYA_18470 PF03461 TRCF domain VYA_18470 PF00271 Helicase conserved C-terminal domain VYA_18470 PF00270 DEAD/DEAH box helicase VYA_18470 PF02559 CarD-like/TRCF domain VYA_18500 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_18510 PF05728 Uncharacterised protein family (UPF0227) VYA_18520 PF01636 Phosphotransferase enzyme family VYA_18530 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VYA_18530 PF13036 Peptidoglycan-synthase activator LpoB VYA_18560 PF01230 HIT domain VYA_18570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_18570 PF00672 HAMP domain VYA_18590 PF01048 Phosphorylase superfamily VYA_18610 PF00403 Heavy-metal-associated domain VYA_18620 PF01554 MatE VYA_18630 PF00571 CBS domain VYA_18630 PF00478 IMP dehydrogenase / GMP reductase domain VYA_18650 PF11953 Domain of unknown function (DUF3470) VYA_18650 PF00037 4Fe-4S binding domain VYA_18660 PF08032 RNA 2'-O ribose methyltransferase substrate binding VYA_18660 PF00588 SpoU rRNA Methylase family VYA_18670 PF05230 MASE2 domain VYA_18670 PF00990 Diguanylate cyclase, GGDEF domain VYA_18690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VYA_18700 PF09619 Type III secretion system lipoprotein chaperone (YscW) VYA_18720 PF01037 Lrp/AsnC ligand binding domain VYA_18720 PF13404 AsnC-type helix-turn-helix domain VYA_18730 PF00291 Pyridoxal-phosphate dependent enzyme VYA_18760 PF05552 Conserved TM helix VYA_18760 PF00924 Mechanosensitive ion channel VYA_18770 PF00282 Pyridoxal-dependent decarboxylase conserved domain VYA_18780 PF06826 Predicted Permease Membrane Region VYA_18790 PF04226 Transglycosylase associated protein VYA_18800 PF03692 Putative zinc- or iron-chelating domain VYA_18810 PF03692 Putative zinc- or iron-chelating domain VYA_18820 PF00230 Major intrinsic protein VYA_18830 PF13662 Toprim domain VYA_18830 PF02132 RecR protein VYA_18840 PF02575 YbaB/EbfC DNA-binding family VYA_18850 PF12170 DNA polymerase III tau subunit V interacting with alpha VYA_18850 PF12169 DNA polymerase III subunits gamma and tau domain III VYA_18860 PF00156 Phosphoribosyl transferase domain VYA_18870 PF04304 Protein of unknown function (DUF454) VYA_18880 PF00072 Response regulator receiver domain VYA_18890 PF03466 LysR substrate binding domain VYA_18890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_18900 PF00156 Phosphoribosyl transferase domain VYA_18910 PF02674 Colicin V production protein VYA_18920 PF05036 Sporulation related domain VYA_18930 PF02875 Mur ligase family, glutamate ligase domain VYA_18930 PF08245 Mur ligase middle domain VYA_18940 PF01039 Carboxyl transferase domain VYA_18940 PF17848 Acetyl-coA carboxylase zinc finger domain VYA_18950 PF01416 tRNA pseudouridine synthase VYA_18970 PF02774 Semialdehyde dehydrogenase, dimerisation domain VYA_18970 PF01118 Semialdehyde dehydrogenase, NAD binding domain VYA_18980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VYA_18980 PF11890 Domain of unknown function (DUF3410) VYA_18980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VYA_18990 PF02801 Beta-ketoacyl synthase, C-terminal domain VYA_18990 PF00109 Beta-ketoacyl synthase, N-terminal domain VYA_19000 PF01266 FAD dependent oxidoreductase VYA_19000 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VYA_19010 PF03358 NADPH-dependent FMN reductase VYA_19020 PF08891 YfcL protein VYA_19030 PF04315 Elongation factor P hydroxylase VYA_19040 PF03458 UPF0126 domain VYA_19050 PF01264 Chorismate synthase VYA_19060 PF05175 Methyltransferase small domain VYA_19070 PF01713 Smr domain VYA_19080 PF00300 Histidine phosphatase superfamily (branch 1) VYA_19090 PF00675 Insulinase (Peptidase family M16) VYA_19090 PF05193 Peptidase M16 inactive domain VYA_19090 PF16187 Middle or third domain of peptidase_M16 VYA_19110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VYA_19110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VYA_19110 PF00378 Enoyl-CoA hydratase/isomerase VYA_19120 PF00108 Thiolase, N-terminal domain VYA_19120 PF02803 Thiolase, C-terminal domain VYA_19130 PF08281 Sigma-70, region 4 VYA_19130 PF04542 Sigma-70 region 2 VYA_19150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VYA_19160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VYA_19170 PF04333 MlaA lipoprotein VYA_19180 PF03918 Cytochrome C biogenesis protein VYA_19190 PF03918 Cytochrome C biogenesis protein VYA_19200 PF08534 Redoxin VYA_19210 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VYA_19210 PF01578 Cytochrome C assembly protein VYA_19220 PF03100 CcmE VYA_19240 PF01578 Cytochrome C assembly protein VYA_19250 PF03379 CcmB protein VYA_19260 PF00005 ABC transporter VYA_19280 PF01584 CheW-like domain VYA_19300 PF13614 AAA domain VYA_19310 PF01339 CheB methylesterase VYA_19310 PF00072 Response regulator receiver domain VYA_19320 PF01584 CheW-like domain VYA_19320 PF02895 Signal transducing histidine kinase, homodimeric domain VYA_19320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_19320 PF00072 Response regulator receiver domain VYA_19320 PF01627 Hpt domain VYA_19330 PF04344 Chemotaxis phosphatase, CheZ VYA_19340 PF00072 Response regulator receiver domain VYA_19350 PF04542 Sigma-70 region 2 VYA_19350 PF04539 Sigma-70 region 3 VYA_19350 PF04545 Sigma-70, region 4 VYA_19360 PF10609 NUBPL iron-transfer P-loop NTPase VYA_19370 PF00448 SRP54-type protein, GTPase domain VYA_19380 PF00771 FHIPEP family VYA_19390 PF01312 FlhB HrpN YscU SpaS Family VYA_19400 PF01311 Bacterial export proteins, family 1 VYA_19410 PF01313 Bacterial export proteins, family 3 VYA_19420 PF00813 FliP family VYA_19430 PF04347 Flagellar biosynthesis protein, FliO VYA_19440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VYA_19450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VYA_19450 PF02154 Flagellar motor switch protein FliM VYA_19490 PF18269 T3SS EscN ATPase C-terminal domain VYA_19490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VYA_19510 PF01706 FliG C-terminal domain VYA_19510 PF14841 FliG middle domain VYA_19510 PF14842 FliG N-terminal domain VYA_19520 PF01514 Secretory protein of YscJ/FliF family VYA_19520 PF08345 Flagellar M-ring protein C-terminal VYA_19530 PF02049 Flagellar hook-basal body complex protein FliE VYA_19540 PF02954 Bacterial regulatory protein, Fis family VYA_19540 PF00072 Response regulator receiver domain VYA_19540 PF00158 Sigma-54 interaction domain VYA_19550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_19550 PF00512 His Kinase A (phospho-acceptor) domain VYA_19550 PF13188 PAS domain VYA_19560 PF00158 Sigma-54 interaction domain VYA_19560 PF02954 Bacterial regulatory protein, Fis family VYA_19560 PF06490 Flagellar regulatory protein FleQ VYA_19570 PF02561 Flagellar protein FliS VYA_19590 PF07196 Flagellin hook IN motif VYA_19590 PF07195 Flagellar hook-associated protein 2 C-terminus VYA_19590 PF02465 Flagellar hook-associated protein 2 N-terminus VYA_19600 PF03646 FlaG protein VYA_19610 PF00700 Bacterial flagellin C-terminal helical region VYA_19610 PF07196 Flagellin hook IN motif VYA_19610 PF00669 Bacterial flagellin N-terminal helical region VYA_19620 PF00669 Bacterial flagellin N-terminal helical region VYA_19620 PF07196 Flagellin hook IN motif VYA_19620 PF00700 Bacterial flagellin C-terminal helical region VYA_19630 PF00700 Bacterial flagellin C-terminal helical region VYA_19630 PF07196 Flagellin hook IN motif VYA_19630 PF00669 Bacterial flagellin N-terminal helical region VYA_19640 PF04261 Dyp-type peroxidase family VYA_19680 PF03960 ArsC family VYA_19690 PF07687 Peptidase dimerisation domain VYA_19690 PF01546 Peptidase family M20/M25/M40 VYA_19720 PF06804 NlpB/DapX lipoprotein VYA_19730 PF00701 Dihydrodipicolinate synthetase family VYA_19740 PF01842 ACT domain VYA_19750 PF00578 AhpC/TSA family VYA_19800 PF00578 AhpC/TSA family VYA_19820 PF01381 Helix-turn-helix VYA_19870 PF13737 Transposase DDE domain VYA_19880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VYA_19910 PF00578 AhpC/TSA family VYA_19920 PF01594 AI-2E family transporter VYA_19940 PF01435 Peptidase family M48 VYA_19940 PF13181 Tetratricopeptide repeat VYA_19950 PF03960 ArsC family VYA_19960 PF03358 NADPH-dependent FMN reductase VYA_19990 PF00860 Permease family VYA_20010 PF00586 AIR synthase related protein, N-terminal domain VYA_20010 PF02769 AIR synthase related protein, C-terminal domain VYA_20020 PF00551 Formyl transferase VYA_20040 PF13230 Glutamine amidotransferases class-II VYA_20050 PF13580 SIS domain VYA_20060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_20060 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_20060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_20060 PF09317 Domain of unknown function (DUF1974) VYA_20090 PF00929 Exonuclease VYA_20100 PF00075 RNase H VYA_20110 PF08241 Methyltransferase domain VYA_20120 PF16123 Hydroxyacylglutathione hydrolase C-terminus VYA_20120 PF00753 Metallo-beta-lactamase superfamily VYA_20130 PF01464 Transglycosylase SLT domain VYA_20130 PF01476 LysM domain VYA_20160 PF00543 Nitrogen regulatory protein P-II VYA_20170 PF00034 Cytochrome c VYA_20180 PF09179 TilS substrate binding domain VYA_20180 PF11734 TilS substrate C-terminal domain VYA_20180 PF01171 PP-loop family VYA_20190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VYA_20200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VYA_20200 PF07733 Bacterial DNA polymerase III alpha NTPase domain VYA_20200 PF01336 OB-fold nucleic acid binding domain VYA_20200 PF14579 Helix-hairpin-helix motif VYA_20200 PF02811 PHP domain VYA_20210 PF01351 Ribonuclease HII VYA_20220 PF02684 Lipid-A-disaccharide synthetase VYA_20230 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VYA_20230 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_20240 PF07977 FabA-like domain VYA_20250 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_20250 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VYA_20260 PF03938 Outer membrane protein (OmpH-like) VYA_20270 PF01103 Surface antigen VYA_20270 PF07244 Surface antigen variable number repeat VYA_20280 PF17820 PDZ domain VYA_20280 PF02163 Peptidase family M50 VYA_20290 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VYA_20290 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VYA_20290 PF13288 DXP reductoisomerase C-terminal domain VYA_20310 PF01255 Putative undecaprenyl diphosphate synthase VYA_20320 PF01765 Ribosome recycling factor VYA_20330 PF00696 Amino acid kinase family VYA_20340 PF00889 Elongation factor TS VYA_20350 PF00318 Ribosomal protein S2 VYA_20360 PF00557 Metallopeptidase family M24 VYA_20370 PF01909 Nucleotidyltransferase domain VYA_20370 PF01966 HD domain VYA_20370 PF01842 ACT domain VYA_20370 PF08335 GlnD PII-uridylyltransferase VYA_20380 PF11944 Protein of unknown function (DUF3461) VYA_20390 PF00849 RNA pseudouridylate synthase VYA_20400 PF04287 tRNA pseudouridine synthase C VYA_20440 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VYA_20450 PF03806 AbgT putative transporter family VYA_20460 PF01980 tRNA-methyltransferase O VYA_20460 PF18389 TrmO C-terminal domain VYA_20470 PF03129 Anticodon binding domain VYA_20470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VYA_20470 PF04073 Aminoacyl-tRNA editing domain VYA_20490 PF06786 Uncharacterised protein family (UPF0253) VYA_20510 PF00209 Sodium:neurotransmitter symporter family VYA_20530 PF01272 Transcription elongation factor, GreA/GreB, C-term VYA_20530 PF03449 Transcription elongation factor, N-terminal VYA_20540 PF00270 DEAD/DEAH box helicase VYA_20540 PF00271 Helicase conserved C-terminal domain VYA_20540 PF00570 HRDC domain VYA_20540 PF16124 RecQ zinc-binding VYA_20540 PF09382 RQC domain VYA_20550 PF11799 impB/mucB/samB family C-terminal domain VYA_20550 PF00817 impB/mucB/samB family VYA_20550 PF11798 IMS family HHH motif VYA_20560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_20570 PF00072 Response regulator receiver domain VYA_20570 PF00990 Diguanylate cyclase, GGDEF domain VYA_20590 PF02424 ApbE family VYA_20600 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_20600 PF00175 Oxidoreductase NAD-binding domain VYA_20600 PF00970 Oxidoreductase FAD-binding domain VYA_20610 PF02508 Rnf-Nqr subunit, membrane protein VYA_20620 PF02508 Rnf-Nqr subunit, membrane protein VYA_20630 PF04205 FMN-binding domain VYA_20640 PF03116 NQR2, RnfD, RnfE family VYA_20650 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VYA_20650 PF11973 NQRA C-terminal domain VYA_20660 PF01722 BolA-like protein VYA_20670 PF05175 Methyltransferase small domain VYA_20690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VYA_20700 PF07690 Major Facilitator Superfamily VYA_20720 PF04545 Sigma-70, region 4 VYA_20720 PF04542 Sigma-70 region 2 VYA_20750 PF03502 Nucleoside-specific channel-forming protein, Tsx VYA_20760 PF02558 Ketopantoate reductase PanE/ApbA VYA_20760 PF08546 Ketopantoate reductase PanE/ApbA C terminal VYA_20770 PF01965 DJ-1/PfpI family VYA_20780 PF00266 Aminotransferase class-V VYA_20790 PF02657 Fe-S metabolism associated domain VYA_20800 PF00899 ThiF family VYA_20810 PF03562 MltA specific insert domain VYA_20810 PF06725 3D domain VYA_20830 PF00583 Acetyltransferase (GNAT) family VYA_20830 PF00696 Amino acid kinase family VYA_20850 PF13538 UvrD-like helicase C-terminal domain VYA_20860 PF12705 PD-(D/E)XK nuclease superfamily VYA_20860 PF00580 UvrD/REP helicase N-terminal domain VYA_20860 PF13361 UvrD-like helicase C-terminal domain VYA_20870 PF17946 RecC C-terminal domain VYA_20890 PF03466 LysR substrate binding domain VYA_20890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_20900 PF07130 YebG protein VYA_20930 PF14602 Hexapeptide repeat of succinyl-transferase VYA_20930 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VYA_20940 PF02595 Glycerate kinase family VYA_20950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VYA_20950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VYA_20960 PF01261 Xylose isomerase-like TIM barrel VYA_20970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VYA_20970 PF00205 Thiamine pyrophosphate enzyme, central domain VYA_20970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VYA_20980 PF04115 Ureidoglycolate lyase VYA_21000 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VYA_21020 PF01546 Peptidase family M20/M25/M40 VYA_21030 PF02615 Malate/L-lactate dehydrogenase VYA_21040 PF11392 Protein of unknown function (DUF2877) VYA_21050 PF06545 Protein of unknown function (DUF1116) VYA_21060 PF02629 CoA binding domain VYA_21060 PF00549 CoA-ligase VYA_21070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_21070 PF03466 LysR substrate binding domain VYA_21080 PF00696 Amino acid kinase family VYA_21090 PF07883 Cupin domain VYA_21090 PF05899 Protein of unknown function (DUF861) VYA_21100 PF00266 Aminotransferase class-V VYA_21120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VYA_21120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VYA_21130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VYA_21130 PF01266 FAD dependent oxidoreductase VYA_21140 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VYA_21140 PF01464 Transglycosylase SLT domain VYA_21170 PF00356 Bacterial regulatory proteins, lacI family VYA_21180 PF01263 Aldose 1-epimerase VYA_21190 PF10509 Galactokinase galactose-binding signature VYA_21190 PF08544 GHMP kinases C terminal VYA_21190 PF00288 GHMP kinases N terminal domain VYA_21200 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VYA_21200 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VYA_21210 PF16363 GDP-mannose 4,6 dehydratase VYA_21220 PF00356 Bacterial regulatory proteins, lacI family VYA_21230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_21230 PF03466 LysR substrate binding domain VYA_21250 PF00501 AMP-binding enzyme VYA_21260 PF14492 Elongation Factor G, domain II VYA_21260 PF03764 Elongation factor G, domain IV VYA_21260 PF00009 Elongation factor Tu GTP binding domain VYA_21260 PF03144 Elongation factor Tu domain 2 VYA_21260 PF00679 Elongation factor G C-terminus VYA_21270 PF18073 Rubredoxin metal binding domain VYA_21290 PF18429 Domain of unknown function (DUF5609) VYA_21310 PF01048 Phosphorylase superfamily VYA_21320 PF01676 Metalloenzyme superfamily VYA_21330 PF02885 Glycosyl transferase family, helical bundle domain VYA_21330 PF00591 Glycosyl transferase family, a/b domain VYA_21330 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VYA_21340 PF01791 DeoC/LacD family aldolase VYA_21350 PF01773 Na+ dependent nucleoside transporter N-terminus VYA_21350 PF07670 Nucleoside recognition VYA_21350 PF07662 Na+ dependent nucleoside transporter C-terminus VYA_21360 PF01026 TatD related DNase VYA_21380 PF00009 Elongation factor Tu GTP binding domain VYA_21380 PF03144 Elongation factor Tu domain 2 VYA_21380 PF16658 Class II release factor RF3, C-terminal domain VYA_21420 PF13508 Acetyltransferase (GNAT) domain VYA_21430 PF02036 SCP-2 sterol transfer family VYA_21440 PF03707 Bacterial signalling protein N terminal repeat VYA_21440 PF00990 Diguanylate cyclase, GGDEF domain VYA_21440 PF00563 EAL domain VYA_21450 PF01136 Peptidase family U32 VYA_21460 PF01136 Peptidase family U32 VYA_21470 PF01554 MatE VYA_21480 PF01047 MarR family VYA_21490 PF07719 Tetratricopeptide repeat VYA_21490 PF13181 Tetratricopeptide repeat VYA_21500 PF01138 3' exoribonuclease family, domain 1 VYA_21500 PF00013 KH domain VYA_21500 PF03725 3' exoribonuclease family, domain 2 VYA_21500 PF00575 S1 RNA binding domain VYA_21500 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VYA_21510 PF00312 Ribosomal protein S15 VYA_21520 PF09157 Pseudouridine synthase II TruB, C-terminal VYA_21520 PF16198 tRNA pseudouridylate synthase B C-terminal domain VYA_21520 PF01509 TruB family pseudouridylate synthase (N terminal domain) VYA_21530 PF02033 Ribosome-binding factor A VYA_21540 PF00009 Elongation factor Tu GTP binding domain VYA_21540 PF11987 Translation-initiation factor 2 VYA_21540 PF08364 Bacterial translation initiation factor IF-2 associated region VYA_21540 PF04760 Translation initiation factor IF-2, N-terminal region VYA_21550 PF13184 NusA-like KH domain VYA_21550 PF08529 NusA N-terminal domain VYA_21550 PF00575 S1 RNA binding domain VYA_21560 PF02576 RimP N-terminal domain VYA_21560 PF17384 RimP C-terminal SH3 domain VYA_21570 PF03840 Preprotein translocase SecG subunit VYA_21580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VYA_21580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VYA_21580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VYA_21580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VYA_21590 PF00809 Pterin binding enzyme VYA_21600 PF01434 Peptidase family M41 VYA_21600 PF17862 AAA+ lid domain VYA_21600 PF00004 ATPase family associated with various cellular activities (AAA) VYA_21600 PF06480 FtsH Extracellular VYA_21610 PF01728 FtsJ-like methyltransferase VYA_21620 PF01985 CRS1 / YhbY (CRM) domain VYA_21630 PF01272 Transcription elongation factor, GreA/GreB, C-term VYA_21630 PF03449 Transcription elongation factor, N-terminal VYA_21640 PF13609 Gram-negative porin VYA_21650 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VYA_21670 PF00579 tRNA synthetases class I (W and Y) VYA_21680 PF08525 Opacity-associated protein A N-terminal motif VYA_21680 PF01551 Peptidase family M23 VYA_21680 PF01476 LysM domain VYA_21690 PF00873 AcrB/AcrD/AcrF family VYA_21700 PF13533 Biotin-lipoyl like VYA_21710 PF01521 Iron-sulphur cluster biosynthesis VYA_21720 PF00202 Aminotransferase class-III VYA_21730 PF01594 AI-2E family transporter VYA_21740 PF08468 Methyltransferase small domain N-terminal VYA_21740 PF05175 Methyltransferase small domain VYA_21750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_21750 PF00512 His Kinase A (phospho-acceptor) domain VYA_21750 PF09308 LuxQ, periplasmic VYA_21750 PF00072 Response regulator receiver domain VYA_21760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_21770 PF00528 Binding-protein-dependent transport system inner membrane component VYA_21780 PF00528 Binding-protein-dependent transport system inner membrane component VYA_21780 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_21790 PF00005 ABC transporter VYA_21790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_21800 PF00005 ABC transporter VYA_21800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_21820 PF01869 BadF/BadG/BcrA/BcrD ATPase family VYA_21830 PF00728 Glycosyl hydrolase family 20, catalytic domain VYA_21830 PF02838 Glycosyl hydrolase family 20, domain 2 VYA_21840 PF06165 Glycosyltransferase family 36 VYA_21840 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VYA_21850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VYA_21850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VYA_21850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VYA_21850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VYA_21860 PF00005 ABC transporter VYA_21860 PF08402 TOBE domain VYA_21880 PF13416 Bacterial extracellular solute-binding protein VYA_21890 PF00909 Ammonium Transporter Family VYA_21900 PF00543 Nitrogen regulatory protein P-II VYA_21910 PF06062 Uncharacterised protein family (UPF0231) VYA_21920 PF05651 Putative sugar diacid recognition VYA_21920 PF17853 GGDEF-like domain VYA_21920 PF13556 PucR C-terminal helix-turn-helix domain VYA_21930 PF02447 GntP family permease VYA_21940 PF02595 Glycerate kinase family VYA_21950 PF00330 Aconitase family (aconitate hydratase) VYA_21950 PF06434 Aconitate hydratase 2 N-terminus VYA_21950 PF11791 Aconitate B N-terminal domain VYA_21960 PF01734 Patatin-like phospholipase VYA_21970 PF00912 Transglycosylase VYA_21970 PF00905 Penicillin binding protein transpeptidase domain VYA_21970 PF14814 Bifunctional transglycosylase second domain VYA_21980 PF00271 Helicase conserved C-terminal domain VYA_21980 PF04408 Helicase associated domain (HA2) VYA_21980 PF08482 ATP-dependent helicase C-terminal VYA_21980 PF00270 DEAD/DEAH box helicase VYA_21990 PF03749 Sugar fermentation stimulation protein RE domain VYA_21990 PF17746 SfsA N-terminal OB domain VYA_22000 PF01258 Prokaryotic dksA/traR C4-type zinc finger VYA_22010 PF00749 tRNA synthetases class I (E and Q), catalytic domain VYA_22020 PF12626 Polymerase A arginine-rich C-terminus VYA_22020 PF12627 Probable RNA and SrmB- binding site of polymerase A VYA_22020 PF01743 Poly A polymerase head domain VYA_22030 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VYA_22040 PF02548 Ketopantoate hydroxymethyltransferase VYA_22050 PF02569 Pantoate-beta-alanine ligase VYA_22060 PF01061 ABC-2 type transporter VYA_22070 PF00005 ABC transporter VYA_22080 PF00916 Sulfate permease family VYA_22080 PF01740 STAS domain VYA_22090 PF00484 Carbonic anhydrase VYA_22100 PF00156 Phosphoribosyl transferase domain VYA_22110 PF00440 Bacterial regulatory proteins, tetR family VYA_22120 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_22120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VYA_22130 PF00364 Biotin-requiring enzyme VYA_22130 PF02817 e3 binding domain VYA_22130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VYA_22140 PF00456 Transketolase, thiamine diphosphate binding domain VYA_22140 PF17831 Pyruvate dehydrogenase E1 component middle domain VYA_22150 PF07729 FCD domain VYA_22150 PF00392 Bacterial regulatory proteins, gntR family VYA_22160 PF01510 N-acetylmuramoyl-L-alanine amidase VYA_22170 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VYA_22170 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VYA_22180 PF00114 Pilin (bacterial filament) VYA_22180 PF07963 Prokaryotic N-terminal methylation motif VYA_22190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VYA_22190 PF00437 Type II/IV secretion system protein VYA_22200 PF00482 Type II secretion system (T2SS), protein F VYA_22210 PF01478 Type IV leader peptidase family VYA_22210 PF06750 Bacterial Peptidase A24 N-terminal domain VYA_22220 PF01121 Dephospho-CoA kinase VYA_22230 PF07072 Cell division protein VYA_22240 PF03884 DNA gyrase inhibitor YacG VYA_22250 PF01245 Ribosomal protein L19 VYA_22260 PF01746 tRNA (Guanine-1)-methyltransferase VYA_22270 PF05239 PRC-barrel domain VYA_22270 PF01782 RimM N-terminal domain VYA_22280 PF00886 Ribosomal protein S16 VYA_22290 PF00448 SRP54-type protein, GTPase domain VYA_22290 PF02881 SRP54-type protein, helical bundle domain VYA_22290 PF02978 Signal peptide binding domain VYA_22300 PF01578 Cytochrome C assembly protein VYA_22310 PF03471 Transporter associated domain VYA_22310 PF01595 Cyclin M transmembrane N-terminal domain VYA_22310 PF00571 CBS domain VYA_22320 PF02664 S-Ribosylhomocysteinase (LuxS) VYA_22340 PF04262 Glutamate-cysteine ligase VYA_22350 PF00675 Insulinase (Peptidase family M16) VYA_22350 PF05193 Peptidase M16 inactive domain VYA_22360 PF09335 SNARE associated Golgi protein VYA_22370 PF00107 Zinc-binding dehydrogenase VYA_22370 PF08240 Alcohol dehydrogenase GroES-like domain VYA_22380 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VYA_22390 PF00364 Biotin-requiring enzyme VYA_22390 PF00682 HMGL-like VYA_22390 PF02436 Conserved carboxylase domain VYA_22400 PF04277 Oxaloacetate decarboxylase, gamma chain VYA_22410 PF00196 Bacterial regulatory proteins, luxR family VYA_22470 PF02599 Global regulator protein family VYA_22480 PF13840 ACT domain VYA_22480 PF01842 ACT domain VYA_22480 PF00696 Amino acid kinase family VYA_22490 PF02272 DHHA1 domain VYA_22490 PF01411 tRNA synthetases class II (A) VYA_22490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VYA_22500 PF02631 RecX family VYA_22510 PF00154 recA bacterial DNA recombination protein VYA_22520 PF02464 Competence-damaged protein VYA_22530 PF01624 MutS domain I VYA_22530 PF05188 MutS domain II VYA_22530 PF05192 MutS domain III VYA_22530 PF05190 MutS family domain IV VYA_22530 PF00488 MutS domain V VYA_22540 PF04539 Sigma-70 region 3 VYA_22540 PF04545 Sigma-70, region 4 VYA_22540 PF04542 Sigma-70 region 2 VYA_22540 PF00140 Sigma-70 factor, region 1.2 VYA_22550 PF01476 LysM domain VYA_22550 PF01551 Peptidase family M23 VYA_22570 PF01975 Survival protein SurE VYA_22580 PF01142 tRNA pseudouridine synthase D (TruD) VYA_22590 PF02542 YgbB family VYA_22600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VYA_22610 PF04977 Septum formation initiator VYA_22620 PF00113 Enolase, C-terminal TIM barrel domain VYA_22620 PF03952 Enolase, N-terminal domain VYA_22630 PF06418 CTP synthase N-terminus VYA_22630 PF00117 Glutamine amidotransferase class-I VYA_22640 PF03819 MazG nucleotide pyrophosphohydrolase domain VYA_22650 PF02824 TGS domain VYA_22650 PF04607 Region found in RelA / SpoT proteins VYA_22650 PF13291 ACT domain VYA_22660 PF01938 TRAM domain VYA_22660 PF05958 tRNA (Uracil-5-)-methyltransferase VYA_22670 PF00672 HAMP domain VYA_22670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_22670 PF00512 His Kinase A (phospho-acceptor) domain VYA_22670 PF01627 Hpt domain VYA_22670 PF00072 Response regulator receiver domain VYA_22670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VYA_22680 PF01648 4'-phosphopantetheinyl transferase superfamily VYA_22690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VYA_22700 PF02565 Recombination protein O C terminal VYA_22700 PF11967 Recombination protein O N terminal VYA_22710 PF01926 50S ribosome-binding GTPase VYA_22710 PF07650 KH domain VYA_22720 PF00035 Double-stranded RNA binding motif VYA_22720 PF14622 Ribonuclease-III-like VYA_22730 PF10502 Signal peptidase, peptidase S26 VYA_22740 PF06421 GTP-binding protein LepA C-terminus VYA_22740 PF03144 Elongation factor Tu domain 2 VYA_22740 PF00679 Elongation factor G C-terminus VYA_22740 PF00009 Elongation factor Tu GTP binding domain VYA_22760 PF03888 MucB/RseB N-terminal domain VYA_22760 PF17188 MucB/RseB C-terminal domain VYA_22770 PF03873 Anti sigma-E protein RseA, C-terminal domain VYA_22770 PF03872 Anti sigma-E protein RseA, N-terminal domain VYA_22780 PF04542 Sigma-70 region 2 VYA_22780 PF08281 Sigma-70, region 4 VYA_22790 PF00890 FAD binding domain VYA_22790 PF02910 Fumarate reductase flavoprotein C-term VYA_22800 PF03937 Flavinator of succinate dehydrogenase VYA_22840 PF01494 FAD binding domain VYA_22850 PF01494 FAD binding domain VYA_22860 PF03695 Uncharacterised protein family (UPF0149) VYA_22870 PF05164 Cell division protein ZapA VYA_22880 PF01812 5-formyltetrahydrofolate cyclo-ligase family VYA_22890 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VYA_22900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VYA_22900 PF01842 ACT domain VYA_22900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VYA_22910 PF04402 Protein of unknown function (DUF541) VYA_22920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_22920 PF03466 LysR substrate binding domain VYA_22930 PF01810 LysE type translocator VYA_22950 PF05552 Conserved TM helix VYA_22950 PF00924 Mechanosensitive ion channel VYA_22960 PF01116 Fructose-bisphosphate aldolase class-II VYA_22970 PF00162 Phosphoglycerate kinase VYA_22980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VYA_22980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VYA_23000 PF02780 Transketolase, C-terminal domain VYA_23000 PF02779 Transketolase, pyrimidine binding domain VYA_23000 PF00456 Transketolase, thiamine diphosphate binding domain VYA_23010 PF02772 S-adenosylmethionine synthetase, central domain VYA_23010 PF00438 S-adenosylmethionine synthetase, N-terminal domain VYA_23010 PF02773 S-adenosylmethionine synthetase, C-terminal domain VYA_23030 PF10263 SprT-like family VYA_23030 PF17283 SprT-like zinc ribbon domain VYA_23050 PF04231 Endonuclease I VYA_23060 PF04452 RNA methyltransferase VYA_23070 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VYA_23070 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VYA_23080 PF02622 Uncharacterized ACR, COG1678 VYA_23090 PF03652 Holliday junction resolvase VYA_23100 PF00437 Type II/IV secretion system protein VYA_23110 PF00437 Type II/IV secretion system protein VYA_23120 PF01168 Alanine racemase, N-terminal domain VYA_23130 PF14748 Pyrroline-5-carboxylate reductase dimerisation VYA_23130 PF03807 NADP oxidoreductase coenzyme F420-dependent VYA_23140 PF02325 YGGT family VYA_23150 PF02594 Uncharacterised ACR, YggU family COG1872 VYA_23170 PF01725 Ham1 family VYA_23180 PF04055 Radical SAM superfamily VYA_23180 PF06969 HemN C-terminal domain VYA_23190 PF04960 Glutaminase VYA_23200 PF02086 D12 class N6 adenine-specific DNA methyltransferase VYA_23210 PF02390 Putative methyltransferase VYA_23220 PF14815 NUDIX domain VYA_23220 PF10576 Iron-sulfur binding domain of endonuclease III VYA_23220 PF00730 HhH-GPD superfamily base excision DNA repair protein VYA_23220 PF00633 Helix-hairpin-helix motif VYA_23230 PF04362 Bacterial Fe(2+) trafficking VYA_23240 PF01464 Transglycosylase SLT domain VYA_23240 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VYA_23250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_23250 PF17200 Single Cache domain 2 VYA_23250 PF00672 HAMP domain VYA_23260 PF00171 Aldehyde dehydrogenase family VYA_23270 PF00072 Response regulator receiver domain VYA_23280 PF00795 Carbon-nitrogen hydrolase VYA_23280 PF00583 Acetyltransferase (GNAT) family VYA_23320 PF03739 Lipopolysaccharide export system permease LptF/LptG VYA_23330 PF03739 Lipopolysaccharide export system permease LptF/LptG VYA_23340 PF00883 Cytosol aminopeptidase family, catalytic domain VYA_23340 PF02789 Cytosol aminopeptidase family, N-terminal domain VYA_23350 PF04364 DNA polymerase III chi subunit, HolC VYA_23360 PF08264 Anticodon-binding domain of tRNA VYA_23360 PF00133 tRNA synthetases class I (I, L, M and V) VYA_23360 PF10458 Valyl tRNA synthetase tRNA binding arm VYA_23380 PF00583 Acetyltransferase (GNAT) family VYA_23400 PF06877 Regulator of ribonuclease activity B VYA_23420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VYA_23420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VYA_23430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VYA_23430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VYA_23440 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VYA_23440 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VYA_23450 PF01042 Endoribonuclease L-PSP VYA_23460 PF01553 Acyltransferase VYA_23470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VYA_23480 PF01722 BolA-like protein VYA_23500 PF05494 MlaC protein VYA_23510 PF02470 MlaD protein VYA_23520 PF02405 Permease MlaE VYA_23530 PF00005 ABC transporter VYA_23540 PF01699 Sodium/calcium exchanger protein VYA_23550 PF00571 CBS domain VYA_23550 PF01380 SIS domain VYA_23570 PF03968 OstA-like protein VYA_23580 PF00005 ABC transporter VYA_23580 PF12399 Branched-chain amino acid ATP-binding cassette transporter VYA_23590 PF00309 Sigma-54 factor, Activator interacting domain (AID) VYA_23590 PF04963 Sigma-54 factor, core binding domain VYA_23590 PF04552 Sigma-54, DNA binding domain VYA_23600 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VYA_23610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VYA_23620 PF03668 P-loop ATPase protein family VYA_23630 PF00381 PTS HPr component phosphorylation site VYA_23640 PF00571 CBS domain VYA_23640 PF01769 Divalent cation transporter VYA_23640 PF03448 MgtE intracellular N domain VYA_23650 PF01523 Putative modulator of DNA gyrase VYA_23660 PF04751 Protein of unknown function (DUF615) VYA_23670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VYA_23670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VYA_23680 PF00849 RNA pseudouridylate synthase VYA_23690 PF00271 Helicase conserved C-terminal domain VYA_23690 PF12137 RNA polymerase recycling family C-terminal VYA_23690 PF00176 SNF2 family N-terminal domain VYA_23690 PF18339 RapA N-terminal Tudor like domain 1 VYA_23690 PF18337 RapA N-terminal Tudor like domain VYA_23700 PF13638 PIN domain VYA_23700 PF02562 PhoH-like protein VYA_23710 PF01523 Putative modulator of DNA gyrase VYA_23720 PF00795 Carbon-nitrogen hydrolase VYA_23730 PF13502 AsmA-like C-terminal region VYA_23730 PF13116 Protein of unknown function VYA_23740 PF00575 S1 RNA binding domain VYA_23740 PF10150 Ribonuclease E/G family VYA_23750 PF02545 Maf-like protein VYA_23760 PF04093 rod shape-determining protein MreD VYA_23770 PF04085 rod shape-determining protein MreC VYA_23850 PF07963 Prokaryotic N-terminal methylation motif VYA_23870 PF00482 Type II secretion system (T2SS), protein F VYA_23880 PF00437 Type II/IV secretion system protein VYA_23880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VYA_23900 PF13401 AAA domain VYA_23900 PF01471 Putative peptidoglycan binding domain VYA_23910 PF03958 Bacterial type II/III secretion system short domain VYA_23910 PF00263 Bacterial type II and III secretion system protein VYA_23950 PF00563 EAL domain VYA_23950 PF17157 Gammaproteobacterial periplasmic sensor domain VYA_23950 PF00990 Diguanylate cyclase, GGDEF domain VYA_23960 PF00436 Single-strand binding protein family VYA_23970 PF00196 Bacterial regulatory proteins, luxR family VYA_23980 PF00483 Nucleotidyl transferase VYA_23990 PF00005 ABC transporter VYA_23990 PF17755 UvrA DNA-binding domain VYA_23990 PF17760 UvrA interaction domain VYA_24010 PF00266 Aminotransferase class-V VYA_24020 PF00696 Amino acid kinase family VYA_24020 PF01842 ACT domain VYA_24030 PF00809 Pterin binding enzyme VYA_24030 PF02574 Homocysteine S-methyltransferase VYA_24030 PF02607 B12 binding domain VYA_24030 PF02965 Vitamin B12 dependent methionine synthase, activation domain VYA_24030 PF02310 B12 binding domain VYA_24040 PF00999 Sodium/hydrogen exchanger family VYA_24050 PF13358 DDE superfamily endonuclease VYA_24080 PF01507 Phosphoadenosine phosphosulfate reductase family VYA_24090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VYA_24090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VYA_24100 PF00175 Oxidoreductase NAD-binding domain VYA_24100 PF00258 Flavodoxin VYA_24100 PF00667 FAD binding domain VYA_24140 PF01207 Dihydrouridine synthase (Dus) VYA_24150 PF01475 Ferric uptake regulator family VYA_24170 PF00342 Phosphoglucose isomerase VYA_24180 PF01894 Uncharacterised protein family UPF0047 VYA_24200 PF01168 Alanine racemase, N-terminal domain VYA_24200 PF00842 Alanine racemase, C-terminal domain VYA_24210 PF00772 DnaB-like helicase N terminal domain VYA_24210 PF03796 DnaB-like helicase C terminal domain VYA_24230 PF03948 Ribosomal protein L9, C-terminal domain VYA_24230 PF01281 Ribosomal protein L9, N-terminal domain VYA_24240 PF01084 Ribosomal protein S18 VYA_24250 PF00436 Single-strand binding protein family VYA_24260 PF01250 Ribosomal protein S6 VYA_24270 PF00834 Ribulose-phosphate 3 epimerase family VYA_24280 PF02086 D12 class N6 adenine-specific DNA methyltransferase VYA_24300 PF01761 3-dehydroquinate synthase VYA_24310 PF01202 Shikimate kinase VYA_24320 PF11741 AMIN domain VYA_24320 PF00263 Bacterial type II and III secretion system protein VYA_24320 PF03958 Bacterial type II/III secretion system short domain VYA_24320 PF07660 Secretin and TonB N terminus short domain VYA_24370 PF17092 Penicillin-binding protein OB-like domain VYA_24370 PF00912 Transglycosylase VYA_24370 PF00905 Penicillin binding protein transpeptidase domain VYA_24380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_24380 PF03466 LysR substrate binding domain VYA_24390 PF00462 Glutaredoxin VYA_24390 PF08534 Redoxin VYA_24400 PF14698 Argininosuccinate lyase C-terminal VYA_24400 PF00206 Lyase VYA_24400 PF00583 Acetyltransferase (GNAT) family VYA_24410 PF00764 Arginosuccinate synthase VYA_24420 PF00696 Amino acid kinase family VYA_24430 PF01118 Semialdehyde dehydrogenase, NAD binding domain VYA_24430 PF02774 Semialdehyde dehydrogenase, dimerisation domain VYA_24440 PF07687 Peptidase dimerisation domain VYA_24440 PF01546 Peptidase family M20/M25/M40 VYA_24450 PF00311 Phosphoenolpyruvate carboxylase VYA_24470 PF02219 Methylenetetrahydrofolate reductase VYA_24480 PF03447 Homoserine dehydrogenase, NAD binding domain VYA_24480 PF00742 Homoserine dehydrogenase VYA_24480 PF00696 Amino acid kinase family VYA_24490 PF01053 Cys/Met metabolism PLP-dependent enzyme VYA_24500 PF01340 Met Apo-repressor, MetJ VYA_24510 PF00390 Malic enzyme, N-terminal domain VYA_24510 PF03949 Malic enzyme, NAD binding domain VYA_24520 PF00210 Ferritin-like domain VYA_24530 PF04324 BFD-like [2Fe-2S] binding domain VYA_24540 PF00009 Elongation factor Tu GTP binding domain VYA_24540 PF03144 Elongation factor Tu domain 2 VYA_24540 PF03143 Elongation factor Tu C-terminal domain VYA_24550 PF14492 Elongation Factor G, domain II VYA_24550 PF03144 Elongation factor Tu domain 2 VYA_24550 PF03764 Elongation factor G, domain IV VYA_24550 PF00679 Elongation factor G C-terminus VYA_24550 PF00009 Elongation factor Tu GTP binding domain VYA_24560 PF00177 Ribosomal protein S7p/S5e VYA_24570 PF00164 Ribosomal protein S12/S23 VYA_24580 PF04077 DsrH like protein VYA_24590 PF02635 DsrE/DsrF-like family VYA_24600 PF02635 DsrE/DsrF-like family VYA_24610 PF13309 HTH domain VYA_24610 PF08348 YheO-like PAS domain VYA_24620 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VYA_24620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_24640 PF04102 SlyX VYA_24650 PF01112 Asparaginase VYA_24660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_24680 PF00999 Sodium/hydrogen exchanger family VYA_24680 PF02254 TrkA-N domain VYA_24690 PF02525 Flavodoxin-like fold VYA_24700 PF12848 ABC transporter VYA_24700 PF00005 ABC transporter VYA_24720 PF00561 alpha/beta hydrolase fold VYA_24730 PF06794 Uncharacterised protein family (UPF0270) VYA_24740 PF00485 Phosphoribulokinase / Uridine kinase family VYA_24750 PF00027 Cyclic nucleotide-binding domain VYA_24750 PF13545 Crp-like helix-turn-helix domain VYA_24770 PF00171 Aldehyde dehydrogenase family VYA_24780 PF04958 Arginine N-succinyltransferase beta subunit VYA_24790 PF00202 Aminotransferase class-III VYA_24800 PF00117 Glutamine amidotransferase class-I VYA_24810 PF00579 tRNA synthetases class I (W and Y) VYA_24820 PF13419 Haloacid dehalogenase-like hydrolase VYA_24830 PF08032 RNA 2'-O ribose methyltransferase substrate binding VYA_24830 PF00588 SpoU rRNA Methylase family VYA_24840 PF17876 Cold shock domain VYA_24840 PF08461 Ribonuclease R winged-helix domain VYA_24840 PF08206 Ribonuclease B OB domain VYA_24840 PF00773 RNB domain VYA_24840 PF00575 S1 RNA binding domain VYA_24850 PF02082 Transcriptional regulator VYA_24860 PF00970 Oxidoreductase FAD-binding domain VYA_24860 PF00042 Globin VYA_24860 PF00175 Oxidoreductase NAD-binding domain VYA_24870 PF08238 Sel1 repeat VYA_24880 PF00709 Adenylosuccinate synthetase VYA_24890 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VYA_24900 PF01145 SPFH domain / Band 7 family VYA_24910 PF01145 SPFH domain / Band 7 family VYA_24910 PF12221 Bacterial membrane protein N terminal VYA_24920 PF16360 GTP-binding GTPase Middle Region VYA_24920 PF13167 GTP-binding GTPase N-terminal VYA_24920 PF01926 50S ribosome-binding GTPase VYA_24930 PF17209 Hfq protein VYA_24950 PF01119 DNA mismatch repair protein, C-terminal domain VYA_24950 PF08676 MutL C terminal dimerisation domain VYA_24960 PF01520 N-acetylmuramoyl-L-alanine amidase VYA_24970 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VYA_24980 PF08331 Domain of unknown function (DUF1730) VYA_24990 PF00929 Exonuclease VYA_25000 PF03193 RsgA GTPase VYA_25010 PF02666 Phosphatidylserine decarboxylase VYA_25030 PF00939 Sodium:sulfate symporter transmembrane region VYA_25040 PF02743 Cache domain VYA_25040 PF00672 HAMP domain VYA_25040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_25070 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VYA_25070 PF01676 Metalloenzyme superfamily VYA_25080 PF00581 Rhodanese-like domain VYA_25090 PF02556 Preprotein translocase subunit SecB VYA_25100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VYA_25100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VYA_25110 PF06426 Serine acetyltransferase, N-terminal VYA_25110 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_25120 PF01551 Peptidase family M23 VYA_25140 PF08360 QacR-like protein, C-terminal region VYA_25140 PF00440 Bacterial regulatory proteins, tetR family VYA_25160 PF00152 tRNA synthetases class II (D, K and N) VYA_25170 PF00890 FAD binding domain VYA_25170 PF02910 Fumarate reductase flavoprotein C-term VYA_25180 PF13085 2Fe-2S iron-sulfur cluster binding domain VYA_25180 PF13183 4Fe-4S dicluster domain VYA_25190 PF02300 Fumarate reductase subunit C VYA_25200 PF02313 Fumarate reductase subunit D VYA_25210 PF09285 Elongation factor P, C-terminal VYA_25210 PF08207 Elongation factor P (EF-P) KOW-like domain VYA_25210 PF01132 Elongation factor P (EF-P) OB domain VYA_25220 PF04055 Radical SAM superfamily VYA_25230 PF02308 MgtC family VYA_25250 PF00118 TCP-1/cpn60 chaperonin family VYA_25260 PF00166 Chaperonin 10 Kd subunit VYA_25270 PF01554 MatE VYA_25280 PF00365 Phosphofructokinase VYA_25290 PF01545 Cation efflux family VYA_25290 PF16916 Dimerisation domain of Zinc Transporter VYA_25300 PF07813 LTXXQ motif family protein VYA_25310 PF00486 Transcriptional regulatory protein, C terminal VYA_25310 PF00072 Response regulator receiver domain VYA_25320 PF00512 His Kinase A (phospho-acceptor) domain VYA_25320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_25320 PF00672 HAMP domain VYA_25320 PF16527 Two-component sensor protein CpxA, periplasmic domain VYA_25330 PF00588 SpoU rRNA Methylase family VYA_25340 PF04186 FxsA cytoplasmic membrane protein VYA_25350 PF00206 Lyase VYA_25350 PF10415 Fumarase C C-terminus VYA_25360 PF03605 Anaerobic c4-dicarboxylate membrane transporter VYA_25370 PF02683 Cytochrome C biogenesis protein transmembrane region VYA_25370 PF11412 Disulphide bond corrector protein DsbC VYA_25380 PF00196 Bacterial regulatory proteins, luxR family VYA_25380 PF00072 Response regulator receiver domain VYA_25390 PF01914 MarC family integral membrane protein VYA_25410 PF00474 Sodium:solute symporter family VYA_25430 PF00072 Response regulator receiver domain VYA_25430 PF00672 HAMP domain VYA_25430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_25430 PF01627 Hpt domain VYA_25430 PF00512 His Kinase A (phospho-acceptor) domain VYA_25440 PF12832 MFS_1 like family VYA_25470 PF13193 AMP-binding enzyme C-terminal domain VYA_25470 PF00501 AMP-binding enzyme VYA_25470 PF16177 Acetyl-coenzyme A synthetase N-terminus VYA_25480 PF01220 Dehydroquinase class II VYA_25490 PF00364 Biotin-requiring enzyme VYA_25500 PF00289 Biotin carboxylase, N-terminal domain VYA_25500 PF02785 Biotin carboxylase C-terminal domain VYA_25500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VYA_25520 PF01207 Dihydrouridine synthase (Dus) VYA_25530 PF02954 Bacterial regulatory protein, Fis family VYA_25540 PF00990 Diguanylate cyclase, GGDEF domain VYA_25540 PF08448 PAS fold VYA_25580 PF01276 Orn/Lys/Arg decarboxylase, major domain VYA_25580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VYA_25580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VYA_25590 PF13520 Amino acid permease VYA_25600 PF00486 Transcriptional regulatory protein, C terminal VYA_25600 PF18500 CadC C-terminal domain 1 VYA_25610 PF13411 MerR HTH family regulatory protein VYA_25620 PF02142 MGS-like domain VYA_25620 PF01808 AICARFT/IMPCHase bienzyme VYA_25630 PF02844 Phosphoribosylglycinamide synthetase, N domain VYA_25630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VYA_25630 PF02843 Phosphoribosylglycinamide synthetase, C domain VYA_25660 PF00216 Bacterial DNA-binding protein VYA_25670 PF01595 Cyclin M transmembrane N-terminal domain VYA_25670 PF00571 CBS domain VYA_25690 PF04222 Protein of unknown function (DUF416) VYA_25700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VYA_25710 PF03167 Uracil DNA glycosylase superfamily VYA_25720 PF01208 Uroporphyrinogen decarboxylase (URO-D) VYA_25730 PF00293 NUDIX domain VYA_25730 PF09297 NADH pyrophosphatase zinc ribbon domain VYA_25740 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VYA_25750 PF00623 RNA polymerase Rpb1, domain 2 VYA_25750 PF04983 RNA polymerase Rpb1, domain 3 VYA_25750 PF05000 RNA polymerase Rpb1, domain 4 VYA_25750 PF04998 RNA polymerase Rpb1, domain 5 VYA_25750 PF04997 RNA polymerase Rpb1, domain 1 VYA_25760 PF10385 RNA polymerase beta subunit external 1 domain VYA_25760 PF00562 RNA polymerase Rpb2, domain 6 VYA_25760 PF04563 RNA polymerase beta subunit VYA_25760 PF04561 RNA polymerase Rpb2, domain 2 VYA_25760 PF04560 RNA polymerase Rpb2, domain 7 VYA_25760 PF04565 RNA polymerase Rpb2, domain 3 VYA_25770 PF00542 Ribosomal protein L7/L12 C-terminal domain VYA_25770 PF16320 Ribosomal protein L7/L12 dimerisation domain VYA_25780 PF00466 Ribosomal protein L10 VYA_25790 PF00687 Ribosomal protein L1p/L10e family VYA_25800 PF00298 Ribosomal protein L11, RNA binding domain VYA_25800 PF03946 Ribosomal protein L11, N-terminal domain VYA_25810 PF00467 KOW motif VYA_25810 PF02357 Transcription termination factor nusG VYA_25820 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VYA_25830 PF00009 Elongation factor Tu GTP binding domain VYA_25830 PF03144 Elongation factor Tu domain 2 VYA_25830 PF03143 Elongation factor Tu C-terminal domain VYA_25840 PF00485 Phosphoribulokinase / Uridine kinase family VYA_25850 PF02237 Biotin protein ligase C terminal domain VYA_25850 PF08279 HTH domain VYA_25850 PF03099 Biotin/lipoate A/B protein ligase family VYA_25860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VYA_25860 PF01565 FAD binding domain VYA_25880 PF13091 PLD-like domain VYA_25900 PF01177 Asp/Glu/Hydantoin racemase VYA_25920 PF07715 TonB-dependent Receptor Plug Domain VYA_25920 PF00593 TonB dependent receptor VYA_25930 PF05958 tRNA (Uracil-5-)-methyltransferase VYA_25950 PF00440 Bacterial regulatory proteins, tetR family VYA_25960 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_25960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VYA_25970 PF01554 MatE VYA_25990 PF01726 LexA DNA binding domain VYA_25990 PF00717 Peptidase S24-like VYA_26000 PF01553 Acyltransferase VYA_26020 PF01040 UbiA prenyltransferase family VYA_26030 PF04345 Chorismate lyase VYA_26040 PF03748 Flagellar basal body-associated protein FliL VYA_26050 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VYA_26050 PF01694 Rhomboid family VYA_26060 PF00581 Rhodanese-like domain VYA_26080 PF04545 Sigma-70, region 4 VYA_26080 PF04542 Sigma-70 region 2 VYA_26080 PF00140 Sigma-70 factor, region 1.2 VYA_26090 PF18075 FtsX extracellular domain VYA_26100 PF00005 ABC transporter VYA_26110 PF02881 SRP54-type protein, helical bundle domain VYA_26110 PF00448 SRP54-type protein, GTPase domain VYA_26180 PF10694 Protein of unknown function (DUF2500) VYA_26230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VYA_26230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VYA_26240 PF01022 Bacterial regulatory protein, arsR family VYA_26250 PF01810 LysE type translocator VYA_26260 PF12146 Serine aminopeptidase, S33 VYA_26300 PF03942 DTW domain VYA_26310 PF13419 Haloacid dehalogenase-like hydrolase VYA_26320 PF00589 Phage integrase family VYA_26320 PF02899 Phage integrase, N-terminal SAM-like domain VYA_26340 PF01678 Diaminopimelate epimerase VYA_26350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VYA_26350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VYA_26360 PF01491 Frataxin-like domain VYA_26370 PF12633 Adenylate cyclase NT domain VYA_26370 PF01295 Adenylate cyclase, class-I VYA_26380 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VYA_26380 PF03900 Porphobilinogen deaminase, C-terminal domain VYA_26390 PF02602 Uroporphyrinogen-III synthase HemD VYA_26400 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VYA_26430 PF00175 Oxidoreductase NAD-binding domain VYA_26440 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_26450 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VYA_26470 PF07497 Rho termination factor, RNA-binding domain VYA_26470 PF07498 Rho termination factor, N-terminal domain VYA_26470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VYA_26480 PF00085 Thioredoxin VYA_26490 PF00270 DEAD/DEAH box helicase VYA_26490 PF00271 Helicase conserved C-terminal domain VYA_26500 PF02541 Ppx/GppA phosphatase family VYA_26510 PF02592 Putative vitamin uptake transporter VYA_26530 PF00570 HRDC domain VYA_26530 PF00271 Helicase conserved C-terminal domain VYA_26530 PF00270 DEAD/DEAH box helicase VYA_26530 PF09382 RQC domain VYA_26530 PF16124 RecQ zinc-binding VYA_26540 PF00892 EamA-like transporter family VYA_26560 PF01810 LysE type translocator VYA_26580 PF00580 UvrD/REP helicase N-terminal domain VYA_26580 PF13361 UvrD-like helicase C-terminal domain VYA_26600 PF05114 Protein of unknown function (DUF692) VYA_26640 PF07690 Major Facilitator Superfamily VYA_26650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_26650 PF03466 LysR substrate binding domain VYA_26660 PF01321 Creatinase/Prolidase N-terminal domain VYA_26660 PF01321 Creatinase/Prolidase N-terminal domain VYA_26660 PF00557 Metallopeptidase family M24 VYA_26660 PF00557 Metallopeptidase family M24 VYA_26670 PF06968 Biotin and Thiamin Synthesis associated domain VYA_26670 PF04055 Radical SAM superfamily VYA_26680 PF05690 Thiazole biosynthesis protein ThiG VYA_26690 PF02597 ThiS family VYA_26700 PF00899 ThiF family VYA_26710 PF02581 Thiamine monophosphate synthase VYA_26720 PF13667 ThiC-associated domain VYA_26720 PF01964 Radical SAM ThiC family VYA_26730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VYA_26740 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_26750 PF07369 Protein of unknown function (DUF1488) VYA_26760 PF08501 Shikimate dehydrogenase substrate binding domain VYA_26760 PF01488 Shikimate / quinate 5-dehydrogenase VYA_26760 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VYA_26770 PF01218 Coproporphyrinogen III oxidase VYA_26780 PF01300 Telomere recombination VYA_26790 PF00731 AIR carboxylase VYA_26800 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VYA_26800 PF02222 ATP-grasp domain VYA_26810 PF01396 Topoisomerase DNA binding C4 zinc finger VYA_26820 PF04361 Protein of unknown function (DUF494) VYA_26830 PF02481 DNA recombination-mediator protein A VYA_26830 PF17782 DprA winged helix domain VYA_26850 PF01327 Polypeptide deformylase VYA_26860 PF02911 Formyl transferase, C-terminal domain VYA_26860 PF00551 Formyl transferase VYA_26870 PF01189 16S rRNA methyltransferase RsmB/F VYA_26870 PF01029 NusB family VYA_26880 PF02254 TrkA-N domain VYA_26880 PF02080 TrkA-C domain VYA_26890 PF02386 Cation transport protein VYA_26910 PF03006 Haemolysin-III related VYA_26920 PF07070 SpoOM protein VYA_26940 PF06288 Protein of unknown function (DUF1040) VYA_26950 PF13746 4Fe-4S dicluster domain VYA_26950 PF12801 4Fe-4S binding domain VYA_26950 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VYA_26960 PF01636 Phosphotransferase enzyme family VYA_26970 PF01323 DSBA-like thioredoxin domain VYA_26980 PF01553 Acyltransferase VYA_27000 PF01078 Magnesium chelatase, subunit ChlI VYA_27000 PF13335 Magnesium chelatase, subunit ChlI C-terminal VYA_27010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VYA_27010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VYA_27010 PF00205 Thiamine pyrophosphate enzyme, central domain VYA_27030 PF01063 Amino-transferase class IV VYA_27040 PF00920 Dehydratase family VYA_27050 PF00291 Pyridoxal-phosphate dependent enzyme VYA_27050 PF00585 C-terminal regulatory domain of Threonine dehydratase VYA_27060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_27060 PF03466 LysR substrate binding domain VYA_27070 PF07690 Major Facilitator Superfamily VYA_27080 PF12804 MobA-like NTP transferase domain VYA_27080 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_27090 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VYA_27090 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VYA_27100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VYA_27100 PF02874 ATP synthase alpha/beta family, beta-barrel domain VYA_27110 PF00231 ATP synthase VYA_27120 PF00306 ATP synthase alpha/beta chain, C terminal domain VYA_27120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VYA_27120 PF02874 ATP synthase alpha/beta family, beta-barrel domain VYA_27130 PF00213 ATP synthase delta (OSCP) subunit VYA_27140 PF00430 ATP synthase B/B' CF(0) VYA_27150 PF00137 ATP synthase subunit C VYA_27160 PF00119 ATP synthase A chain VYA_27170 PF03899 ATP synthase I chain VYA_27180 PF17762 HTH domain found in ParB protein VYA_27180 PF02195 ParB-like nuclease domain VYA_27190 PF13614 AAA domain VYA_27200 PF02527 rRNA small subunit methyltransferase G VYA_27210 PF01134 Glucose inhibited division protein A VYA_27210 PF13932 GidA associated domain VYA_27220 PF00258 Flavodoxin VYA_27230 PF10396 GTP-binding protein TrmE N-terminus VYA_27230 PF12631 MnmE helical domain VYA_27230 PF01926 50S ribosome-binding GTPase VYA_27240 PF14849 YidC periplasmic domain VYA_27240 PF02096 60Kd inner membrane protein VYA_27250 PF00825 Ribonuclease P VYA_27260 PF00468 Ribosomal protein L34 VYA_27270 PF00005 ABC transporter VYA_27280 PF00528 Binding-protein-dependent transport system inner membrane component VYA_27290 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_27300 PF00528 Binding-protein-dependent transport system inner membrane component VYA_27310 PF00528 Binding-protein-dependent transport system inner membrane component VYA_27320 PF00232 Glycosyl hydrolase family 1 VYA_27330 PF08402 TOBE domain VYA_27330 PF00005 ABC transporter VYA_27340 PF00356 Bacterial regulatory proteins, lacI family VYA_27360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_27370 PF00528 Binding-protein-dependent transport system inner membrane component VYA_27380 PF12911 N-terminal TM domain of oligopeptide transport permease C VYA_27380 PF00528 Binding-protein-dependent transport system inner membrane component VYA_27390 PF00005 ABC transporter VYA_27390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_27400 PF00005 ABC transporter VYA_27400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VYA_27420 PF00356 Bacterial regulatory proteins, lacI family VYA_27450 PF12833 Helix-turn-helix domain VYA_27460 PF01915 Glycosyl hydrolase family 3 C-terminal domain VYA_27460 PF00933 Glycosyl hydrolase family 3 N terminal domain VYA_27460 PF14310 Fibronectin type III-like domain VYA_27470 PF01554 MatE VYA_27490 PF03480 Bacterial extracellular solute-binding protein, family 7 VYA_27500 PF00849 RNA pseudouridylate synthase VYA_27530 PF17152 Periplasmic sensor domain VYA_27530 PF00990 Diguanylate cyclase, GGDEF domain VYA_27550 PF05656 Protein of unknown function (DUF805) VYA_27560 PF00756 Putative esterase VYA_27570 PF00107 Zinc-binding dehydrogenase VYA_27570 PF08240 Alcohol dehydrogenase GroES-like domain VYA_27580 PF00797 N-acetyltransferase VYA_27590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_27590 PF03466 LysR substrate binding domain VYA_27610 PF00326 Prolyl oligopeptidase family VYA_27620 PF01810 LysE type translocator VYA_27630 PF01037 Lrp/AsnC ligand binding domain VYA_27650 PF00893 Small Multidrug Resistance protein VYA_27670 PF01554 MatE VYA_27710 PF13599 Pentapeptide repeats (9 copies) VYA_27720 PF03922 OmpW family VYA_27730 PF16868 NMT1-like family VYA_27750 PF13533 Biotin-lipoyl like VYA_27760 PF07690 Major Facilitator Superfamily VYA_27780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_27790 PF01810 LysE type translocator VYA_27800 PF02743 Cache domain VYA_27800 PF00672 HAMP domain VYA_27800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_27940 PF03264 NapC/NirT cytochrome c family, N-terminal region VYA_27950 PF18364 Molybdopterin oxidoreductase N-terminal domain VYA_27950 PF01568 Molydopterin dinucleotide binding domain VYA_27950 PF00384 Molybdopterin oxidoreductase VYA_27970 PF02581 Thiamine monophosphate synthase VYA_27980 PF02110 Hydroxyethylthiazole kinase family VYA_27990 PF03070 TENA/THI-4/PQQC family VYA_28000 PF09084 NMT1/THI5 like VYA_28010 PF00528 Binding-protein-dependent transport system inner membrane component VYA_28020 PF00005 ABC transporter VYA_28030 PF08543 Phosphomethylpyrimidine kinase VYA_28040 PF01523 Putative modulator of DNA gyrase VYA_28050 PF01523 Putative modulator of DNA gyrase VYA_28060 PF04013 Putative SAM-dependent RNA methyltransferase VYA_28110 PF10928 Protein of unknown function (DUF2810) VYA_28120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VYA_28120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VYA_28140 PF03009 Glycerophosphoryl diester phosphodiesterase family VYA_28150 PF00072 Response regulator receiver domain VYA_28150 PF00486 Transcriptional regulatory protein, C terminal VYA_28160 PF16750 Sensor domain of 2-component histidine kinase VYA_28160 PF00672 HAMP domain VYA_28160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_28160 PF00512 His Kinase A (phospho-acceptor) domain VYA_28170 PF07715 TonB-dependent Receptor Plug Domain VYA_28170 PF00593 TonB dependent receptor VYA_28190 PF01618 MotA/TolQ/ExbB proton channel family VYA_28200 PF01618 MotA/TolQ/ExbB proton channel family VYA_28210 PF02472 Biopolymer transport protein ExbD/TolR VYA_28240 PF13609 Gram-negative porin VYA_28250 PF00326 Prolyl oligopeptidase family VYA_28250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VYA_28260 PF07690 Major Facilitator Superfamily VYA_28270 PF00491 Arginase family VYA_28280 PF17810 Arginine decarboxylase helical bundle domain VYA_28280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VYA_28280 PF17944 Arginine decarboxylase C-terminal helical extension VYA_28290 PF00753 Metallo-beta-lactamase superfamily VYA_28300 PF18030 RimK PreATP-grasp domain VYA_28300 PF08443 RimK-like ATP-grasp domain VYA_28310 PF08443 RimK-like ATP-grasp domain VYA_28310 PF18030 RimK PreATP-grasp domain VYA_28320 PF03466 LysR substrate binding domain VYA_28320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_28360 PF00232 Glycosyl hydrolase family 1 VYA_28370 PF02743 Cache domain VYA_28370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_28370 PF00512 His Kinase A (phospho-acceptor) domain VYA_28380 PF00072 Response regulator receiver domain VYA_28380 PF00158 Sigma-54 interaction domain VYA_28380 PF02954 Bacterial regulatory protein, Fis family VYA_28390 PF00990 Diguanylate cyclase, GGDEF domain VYA_28410 PF05525 Branched-chain amino acid transport protein VYA_28440 PF01266 FAD dependent oxidoreductase VYA_28460 PF03116 NQR2, RnfD, RnfE family VYA_28470 PF01212 Beta-eliminating lyase VYA_28500 PF07670 Nucleoside recognition VYA_28500 PF07662 Na+ dependent nucleoside transporter C-terminus VYA_28500 PF01773 Na+ dependent nucleoside transporter N-terminus VYA_28520 PF03707 Bacterial signalling protein N terminal repeat VYA_28520 PF00563 EAL domain VYA_28520 PF00990 Diguanylate cyclase, GGDEF domain VYA_28550 PF00990 Diguanylate cyclase, GGDEF domain VYA_28560 PF03441 FAD binding domain of DNA photolyase VYA_28560 PF00875 DNA photolyase VYA_28570 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VYA_28590 PF01625 Peptide methionine sulfoxide reductase VYA_28590 PF01641 SelR domain VYA_28600 PF02566 OsmC-like protein VYA_28610 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VYA_28610 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_28610 PF14602 Hexapeptide repeat of succinyl-transferase VYA_28650 PF13419 Haloacid dehalogenase-like hydrolase VYA_28690 PF00924 Mechanosensitive ion channel VYA_28690 PF12795 Mechanosensitive ion channel porin domain VYA_28690 PF12794 Mechanosensitive ion channel inner membrane domain 1 VYA_28700 PF18027 Cytosolic carboxypeptidase N-terminal domain VYA_28700 PF00246 Zinc carboxypeptidase VYA_28710 PF00691 OmpA family VYA_28710 PF01389 OmpA-like transmembrane domain VYA_28730 PF01566 Natural resistance-associated macrophage protein VYA_28740 PF00854 POT family VYA_28750 PF03313 Serine dehydratase alpha chain VYA_28750 PF03315 Serine dehydratase beta chain VYA_28800 PF01476 LysM domain VYA_28800 PF01464 Transglycosylase SLT domain VYA_28840 PF00460 Flagella basal body rod protein VYA_28850 PF00460 Flagella basal body rod protein VYA_28850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_28860 PF13861 FlgD Tudor-like domain VYA_28860 PF13860 FlgD Ig-like domain VYA_28860 PF03963 Flagellar hook capping protein - N-terminal region VYA_28870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_28870 PF00460 Flagella basal body rod protein VYA_28870 PF07559 Flagellar basal body protein FlaE VYA_28880 PF00460 Flagella basal body rod protein VYA_28880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_28890 PF00460 Flagella basal body rod protein VYA_28890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_28900 PF02107 Flagellar L-ring protein VYA_28910 PF02119 Flagellar P-ring protein VYA_28920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VYA_28920 PF10135 Rod binding protein VYA_28930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VYA_28930 PF00460 Flagella basal body rod protein VYA_28960 PF13472 GDSL-like Lipase/Acylhydrolase family VYA_28960 PF02348 Cytidylyltransferase VYA_28970 PF03102 NeuB family VYA_28970 PF08666 SAF domain VYA_28980 PF02350 UDP-N-acetylglucosamine 2-epimerase VYA_29020 PF01070 FMN-dependent dehydrogenase VYA_29030 PF03466 LysR substrate binding domain VYA_29030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_29080 PF13677 Membrane MotB of proton-channel complex MotA/MotB VYA_29080 PF00691 OmpA family VYA_29090 PF01618 MotA/TolQ/ExbB proton channel family VYA_29100 PF04545 Sigma-70, region 4 VYA_29100 PF04542 Sigma-70 region 2 VYA_29110 PF03748 Flagellar basal body-associated protein FliL VYA_29140 PF02561 Flagellar protein FliS VYA_29150 PF07195 Flagellar hook-associated protein 2 C-terminus VYA_29150 PF07196 Flagellin hook IN motif VYA_29150 PF02465 Flagellar hook-associated protein 2 N-terminus VYA_29180 PF00700 Bacterial flagellin C-terminal helical region VYA_29180 PF00669 Bacterial flagellin N-terminal helical region VYA_29200 PF00771 FHIPEP family VYA_29210 PF01312 FlhB HrpN YscU SpaS Family VYA_29220 PF01311 Bacterial export proteins, family 1 VYA_29230 PF01313 Bacterial export proteins, family 3 VYA_29240 PF00813 FliP family VYA_29250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VYA_29280 PF02954 Bacterial regulatory protein, Fis family VYA_29280 PF00072 Response regulator receiver domain VYA_29280 PF00158 Sigma-54 interaction domain VYA_29290 PF02049 Flagellar hook-basal body complex protein FliE VYA_29300 PF01514 Secretory protein of YscJ/FliF family VYA_29300 PF08345 Flagellar M-ring protein C-terminal VYA_29310 PF14841 FliG middle domain VYA_29310 PF01706 FliG C-terminal domain VYA_29310 PF14842 FliG N-terminal domain VYA_29330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VYA_29330 PF18269 T3SS EscN ATPase C-terminal domain VYA_29380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_29390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_29390 PF03466 LysR substrate binding domain VYA_29430 PF00072 Response regulator receiver domain VYA_29430 PF00486 Transcriptional regulatory protein, C terminal VYA_29440 PF13426 PAS domain VYA_29440 PF00072 Response regulator receiver domain VYA_29440 PF08448 PAS fold VYA_29440 PF00512 His Kinase A (phospho-acceptor) domain VYA_29440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_29450 PF00266 Aminotransferase class-V VYA_29470 PF00563 EAL domain VYA_29470 PF00990 Diguanylate cyclase, GGDEF domain VYA_29470 PF03707 Bacterial signalling protein N terminal repeat VYA_29480 PF00155 Aminotransferase class I and II VYA_29490 PF00107 Zinc-binding dehydrogenase VYA_29490 PF08240 Alcohol dehydrogenase GroES-like domain VYA_29570 PF13737 Transposase DDE domain VYA_29590 PF00924 Mechanosensitive ion channel VYA_29610 PF01070 FMN-dependent dehydrogenase VYA_29620 PF03466 LysR substrate binding domain VYA_29620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_29630 PF00326 Prolyl oligopeptidase family VYA_29630 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VYA_29650 PF13654 AAA domain VYA_29650 PF05362 Lon protease (S16) C-terminal proteolytic domain VYA_29660 PF00672 HAMP domain VYA_29660 PF12729 Four helix bundle sensory module for signal transduction VYA_29660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_29670 PF07238 PilZ domain VYA_29670 PF12945 Flagellar protein YcgR VYA_29680 PF00583 Acetyltransferase (GNAT) family VYA_29690 PF12838 4Fe-4S dicluster domain VYA_29690 PF12800 4Fe-4S binding domain VYA_29700 PF12801 4Fe-4S binding domain VYA_29700 PF12837 4Fe-4S binding domain VYA_29710 PF01022 Bacterial regulatory protein, arsR family VYA_29740 PF12558 ATP-binding cassette cobalt transporter VYA_29740 PF00005 ABC transporter VYA_29750 PF07155 ECF-type riboflavin transporter, S component VYA_29760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_29760 PF00529 HlyD membrane-fusion protein of T1SS VYA_29770 PF11742 Protein of unknown function (DUF3302) VYA_29790 PF00990 Diguanylate cyclase, GGDEF domain VYA_29820 PF01048 Phosphorylase superfamily VYA_29830 PF08349 Protein of unknown function (DUF1722) VYA_29840 PF13411 MerR HTH family regulatory protein VYA_29850 PF00875 DNA photolyase VYA_29850 PF03441 FAD binding domain of DNA photolyase VYA_29860 PF01476 LysM domain VYA_29860 PF03734 L,D-transpeptidase catalytic domain VYA_29860 PF17969 L,D-transpeptidase C-terminal domain VYA_29880 PF00270 DEAD/DEAH box helicase VYA_29880 PF00271 Helicase conserved C-terminal domain VYA_29890 PF12849 PBP superfamily domain VYA_29900 PF00528 Binding-protein-dependent transport system inner membrane component VYA_29910 PF00528 Binding-protein-dependent transport system inner membrane component VYA_29920 PF00005 ABC transporter VYA_29930 PF00990 Diguanylate cyclase, GGDEF domain VYA_29930 PF17151 Periplasmic sensor domain VYA_29950 PF13519 von Willebrand factor type A domain VYA_29980 PF01882 Protein of unknown function DUF58 VYA_29990 PF07726 ATPase family associated with various cellular activities (AAA) VYA_29990 PF17863 AAA lid domain VYA_30000 PF02743 Cache domain VYA_30000 PF00672 HAMP domain VYA_30000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_30020 PF00196 Bacterial regulatory proteins, luxR family VYA_30030 PF14602 Hexapeptide repeat of succinyl-transferase VYA_30030 PF12464 Maltose acetyltransferase VYA_30050 PF00563 EAL domain VYA_30050 PF01590 GAF domain VYA_30050 PF00990 Diguanylate cyclase, GGDEF domain VYA_30050 PF00360 Phytochrome region VYA_30080 PF00691 OmpA family VYA_30100 PF02378 Phosphotransferase system, EIIC VYA_30110 PF02378 Phosphotransferase system, EIIC VYA_30120 PF00127 Copper binding proteins, plastocyanin/azurin family VYA_30140 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_30150 PF00375 Sodium:dicarboxylate symporter family VYA_30160 PF13419 Haloacid dehalogenase-like hydrolase VYA_30170 PF10282 Lactonase, 7-bladed beta-propeller VYA_30180 PF01161 Phosphatidylethanolamine-binding protein VYA_30200 PF01758 Sodium Bile acid symporter family VYA_30260 PF03222 Tryptophan/tyrosine permease family VYA_30270 PF02743 Cache domain VYA_30270 PF00672 HAMP domain VYA_30270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_30280 PF07670 Nucleoside recognition VYA_30310 PF01551 Peptidase family M23 VYA_30310 PF01476 LysM domain VYA_30310 PF08525 Opacity-associated protein A N-terminal motif VYA_30340 PF00462 Glutaredoxin VYA_30350 PF00892 EamA-like transporter family VYA_30380 PF01557 Fumarylacetoacetate (FAA) hydrolase family VYA_30410 PF01661 Macro domain VYA_30420 PF01810 LysE type translocator VYA_30430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VYA_30430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VYA_30430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VYA_30430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VYA_30440 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VYA_30440 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VYA_30450 PF00115 Cytochrome C and Quinol oxidase polypeptide I VYA_30460 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VYA_30470 PF00510 Cytochrome c oxidase subunit III VYA_30510 PF02628 Cytochrome oxidase assembly protein VYA_30520 PF01040 UbiA prenyltransferase family VYA_30530 PF00691 OmpA family VYA_30530 PF01389 OmpA-like transmembrane domain VYA_30540 PF00793 DAHP synthetase I family VYA_30550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_30550 PF08447 PAS fold VYA_30560 PF00456 Transketolase, thiamine diphosphate binding domain VYA_30560 PF02780 Transketolase, C-terminal domain VYA_30560 PF02779 Transketolase, pyrimidine binding domain VYA_30570 PF00923 Transaldolase/Fructose-6-phosphate aldolase VYA_30590 PF08329 Chitinase A, N-terminal domain VYA_30590 PF00704 Glycosyl hydrolases family 18 VYA_30600 PF00581 Rhodanese-like domain VYA_30630 PF00899 ThiF family VYA_30640 PF00994 Probable molybdopterin binding domain VYA_30640 PF03453 MoeA N-terminal region (domain I and II) VYA_30640 PF03454 MoeA C-terminal region (domain IV) VYA_30650 PF01227 GTP cyclohydrolase I VYA_30660 PF01566 Natural resistance-associated macrophage protein VYA_30680 PF00654 Voltage gated chloride channel VYA_30710 PF00248 Aldo/keto reductase family VYA_30720 PF00072 Response regulator receiver domain VYA_30740 PF03853 YjeF-related protein N-terminus VYA_30740 PF01256 Carbohydrate kinase VYA_30750 PF00478 IMP dehydrogenase / GMP reductase domain VYA_30760 PF03222 Tryptophan/tyrosine permease family VYA_30770 PF00691 OmpA family VYA_30770 PF13677 Membrane MotB of proton-channel complex MotA/MotB VYA_30780 PF01618 MotA/TolQ/ExbB proton channel family VYA_30790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VYA_30790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VYA_30790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VYA_30790 PF10371 Domain of unknown function VYA_30790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VYA_30820 PF02355 Protein export membrane protein VYA_30820 PF07549 SecD/SecF GG Motif VYA_30820 PF13721 SecD export protein N-terminal TM region VYA_30830 PF07549 SecD/SecF GG Motif VYA_30830 PF02355 Protein export membrane protein VYA_30840 PF03553 Na+/H+ antiporter family VYA_30850 PF03616 Sodium/glutamate symporter VYA_30860 PF02416 mttA/Hcf106 family VYA_30870 PF00486 Transcriptional regulatory protein, C terminal VYA_30870 PF00072 Response regulator receiver domain VYA_30880 PF13493 Domain of unknown function (DUF4118) VYA_30880 PF02702 Osmosensitive K+ channel His kinase sensor domain VYA_30880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_30880 PF00512 His Kinase A (phospho-acceptor) domain VYA_30920 PF00583 Acetyltransferase (GNAT) family VYA_30930 PF03358 NADPH-dependent FMN reductase VYA_30940 PF00141 Peroxidase VYA_30950 PF13533 Biotin-lipoyl like VYA_30970 PF01979 Amidohydrolase family VYA_30980 PF00282 Pyridoxal-dependent decarboxylase conserved domain VYA_31010 PF00440 Bacterial regulatory proteins, tetR family VYA_31010 PF13977 BetI-type transcriptional repressor, C-terminal VYA_31020 PF00171 Aldehyde dehydrogenase family VYA_31030 PF00732 GMC oxidoreductase VYA_31030 PF05199 GMC oxidoreductase VYA_31040 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VYA_31050 PF00528 Binding-protein-dependent transport system inner membrane component VYA_31060 PF00571 CBS domain VYA_31060 PF00005 ABC transporter VYA_31070 PF00881 Nitroreductase family VYA_31080 PF01145 SPFH domain / Band 7 family VYA_31120 PF03707 Bacterial signalling protein N terminal repeat VYA_31120 PF13188 PAS domain VYA_31120 PF00990 Diguanylate cyclase, GGDEF domain VYA_31120 PF00563 EAL domain VYA_31130 PF00072 Response regulator receiver domain VYA_31130 PF09308 LuxQ, periplasmic VYA_31130 PF00512 His Kinase A (phospho-acceptor) domain VYA_31130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_31160 PF04116 Fatty acid hydroxylase superfamily VYA_31190 PF01757 Acyltransferase family VYA_31190 PF00842 Alanine racemase, C-terminal domain VYA_31190 PF01168 Alanine racemase, N-terminal domain VYA_31220 PF03808 Glycosyl transferase WecB/TagA/CpsF family VYA_31240 PF13439 Glycosyltransferase Family 4 VYA_31240 PF00534 Glycosyl transferases group 1 VYA_31300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VYA_31300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VYA_31300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VYA_31310 PF02350 UDP-N-acetylglucosamine 2-epimerase VYA_31320 PF02706 Chain length determinant protein VYA_31320 PF13807 G-rich domain on putative tyrosine kinase VYA_31320 PF13614 AAA domain VYA_31350 PF02397 Bacterial sugar transferase VYA_31400 PF01177 Asp/Glu/Hydantoin racemase VYA_31420 PF01048 Phosphorylase superfamily VYA_31430 PF00990 Diguanylate cyclase, GGDEF domain VYA_31430 PF00563 EAL domain VYA_31440 PF05025 RbsD / FucU transport protein family VYA_31450 PF07690 Major Facilitator Superfamily VYA_31470 PF00294 pfkB family carbohydrate kinase VYA_31480 PF00356 Bacterial regulatory proteins, lacI family VYA_31500 PF13411 MerR HTH family regulatory protein VYA_31540 PF12805 FUSC-like inner membrane protein yccS VYA_31550 PF00580 UvrD/REP helicase N-terminal domain VYA_31550 PF13361 UvrD-like helicase C-terminal domain VYA_31550 PF12462 DNA helicase IV / RNA helicase N terminal VYA_31560 PF02142 MGS-like domain VYA_31570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VYA_31580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_31580 PF00072 Response regulator receiver domain VYA_31580 PF01627 Hpt domain VYA_31580 PF00512 His Kinase A (phospho-acceptor) domain VYA_31580 PF00672 HAMP domain VYA_31620 PF00884 Sulfatase VYA_31630 PF00884 Sulfatase VYA_31650 PF07726 ATPase family associated with various cellular activities (AAA) VYA_31650 PF17863 AAA lid domain VYA_31680 PF00092 von Willebrand factor type A domain VYA_31710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VYA_31710 PF01872 RibD C-terminal domain VYA_31720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_31720 PF03466 LysR substrate binding domain VYA_31730 PF04076 Bacterial OB fold (BOF) protein VYA_31760 PF03781 Sulfatase-modifying factor enzyme 1 VYA_31770 PF13186 Iron-sulfur cluster-binding domain VYA_31770 PF04055 Radical SAM superfamily VYA_31790 PF18081 Fanconi anemia-associated nuclease SAP domain VYA_31790 PF08774 VRR-NUC domain VYA_31820 PF03606 C4-dicarboxylate anaerobic carrier VYA_31860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_31860 PF00072 Response regulator receiver domain VYA_31870 PF00155 Aminotransferase class I and II VYA_31880 PF01926 50S ribosome-binding GTPase VYA_31890 PF00881 Nitroreductase family VYA_31900 PF01584 CheW-like domain VYA_31900 PF00072 Response regulator receiver domain VYA_31910 PF07963 Prokaryotic N-terminal methylation motif VYA_31930 PF00892 EamA-like transporter family VYA_31940 PF01124 MAPEG family VYA_31960 PF01569 PAP2 superfamily VYA_31980 PF00892 EamA-like transporter family VYA_32000 PF00171 Aldehyde dehydrogenase family VYA_32020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VYA_32050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VYA_32060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_32070 PF12320 Type 5 capsule protein repressor C-terminal domain VYA_32070 PF00149 Calcineurin-like phosphoesterase VYA_32080 PF13476 AAA domain VYA_32100 PF00704 Glycosyl hydrolases family 18 VYA_32140 PF08212 Lipocalin-like domain VYA_32160 PF02347 Glycine cleavage system P-protein VYA_32170 PF01597 Glycine cleavage H-protein VYA_32180 PF00464 Serine hydroxymethyltransferase VYA_32200 PF08669 Glycine cleavage T-protein C-terminal barrel domain VYA_32200 PF01571 Aminomethyltransferase folate-binding domain VYA_32220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_32240 PF00873 AcrB/AcrD/AcrF family VYA_32260 PF02378 Phosphotransferase system, EIIC VYA_32260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VYA_32270 PF00294 pfkB family carbohydrate kinase VYA_32280 PF00381 PTS HPr component phosphorylation site VYA_32280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VYA_32290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VYA_32290 PF00356 Bacterial regulatory proteins, lacI family VYA_32340 PF00924 Mechanosensitive ion channel VYA_32370 PF01914 MarC family integral membrane protein VYA_32380 PF00571 CBS domain VYA_32380 PF03448 MgtE intracellular N domain VYA_32380 PF01769 Divalent cation transporter VYA_32400 PF01699 Sodium/calcium exchanger protein VYA_32420 PF00528 Binding-protein-dependent transport system inner membrane component VYA_32430 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_32440 PF00528 Binding-protein-dependent transport system inner membrane component VYA_32450 PF00005 ABC transporter VYA_32460 PF00465 Iron-containing alcohol dehydrogenase VYA_32470 PF06719 AraC-type transcriptional regulator N-terminus VYA_32470 PF12833 Helix-turn-helix domain VYA_32480 PF00483 Nucleotidyl transferase VYA_32490 PF01268 Formate--tetrahydrofolate ligase VYA_32500 PF00294 pfkB family carbohydrate kinase VYA_32530 PF11849 Domain of unknown function (DUF3369) VYA_32540 PF13419 Haloacid dehalogenase-like hydrolase VYA_32560 PF00270 DEAD/DEAH box helicase VYA_32560 PF00271 Helicase conserved C-terminal domain VYA_32590 PF01292 Prokaryotic cytochrome b561 VYA_32600 PF04264 YceI-like domain VYA_32610 PF01226 Formate/nitrite transporter VYA_32620 PF03466 LysR substrate binding domain VYA_32620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_32630 PF06496 Protein of unknown function (DUF1097) VYA_32640 PF11398 Protein of unknown function (DUF2813) VYA_32650 PF02872 5'-nucleotidase, C-terminal domain VYA_32650 PF00149 Calcineurin-like phosphoesterase VYA_32660 PF03741 Integral membrane protein TerC family VYA_32700 PF12262 Bacterial virulence factor lipase N-terminal VYA_32710 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VYA_32740 PF03061 Thioesterase superfamily VYA_32760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_32760 PF12793 Sugar transport-related sRNA regulator N-term VYA_32820 PF00226 DnaJ domain VYA_32820 PF01556 DnaJ C terminal domain VYA_32820 PF00684 DnaJ central domain VYA_32840 PF13188 PAS domain VYA_32840 PF00563 EAL domain VYA_32840 PF03707 Bacterial signalling protein N terminal repeat VYA_32840 PF00990 Diguanylate cyclase, GGDEF domain VYA_32850 PF07055 Enoyl reductase FAD binding domain VYA_32850 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VYA_32850 PF12241 Trans-2-enoyl-CoA reductase catalytic region VYA_32860 PF13472 GDSL-like Lipase/Acylhydrolase family VYA_32870 PF00005 ABC transporter VYA_32900 PF02626 Carboxyltransferase domain, subdomain A and B VYA_32910 PF02682 Carboxyltransferase domain, subdomain C and D VYA_32920 PF03746 LamB/YcsF family VYA_32930 PF00563 EAL domain VYA_32930 PF00990 Diguanylate cyclase, GGDEF domain VYA_32930 PF05231 MASE1 VYA_32930 PF08447 PAS fold VYA_32930 PF08448 PAS fold VYA_32930 PF13426 PAS domain VYA_32940 PF16363 GDP-mannose 4,6 dehydratase VYA_32950 PF07715 TonB-dependent Receptor Plug Domain VYA_32950 PF04886 PT repeat VYA_32950 PF00593 TonB dependent receptor VYA_32960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_32960 PF03466 LysR substrate binding domain VYA_32970 PF00583 Acetyltransferase (GNAT) family VYA_32970 PF13380 CoA binding domain VYA_32970 PF13607 Succinyl-CoA ligase like flavodoxin domain VYA_32990 PF07478 D-ala D-ala ligase C-terminus VYA_32990 PF01820 D-ala D-ala ligase N-terminus VYA_33010 PF01253 Translation initiation factor SUI1 VYA_33030 PF01527 Transposase VYA_33040 PF13276 HTH-like domain VYA_33040 PF00665 Integrase core domain VYA_33040 PF13333 Integrase core domain VYA_33080 PF03701 Uncharacterised protein family (UPF0181) VYA_33110 PF00072 Response regulator receiver domain VYA_33110 PF00486 Transcriptional regulatory protein, C terminal VYA_33130 PF02233 NAD(P) transhydrogenase beta subunit VYA_33140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VYA_33140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VYA_33140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VYA_33170 PF00990 Diguanylate cyclase, GGDEF domain VYA_33200 PF00360 Phytochrome region VYA_33200 PF00563 EAL domain VYA_33200 PF00990 Diguanylate cyclase, GGDEF domain VYA_33200 PF01590 GAF domain VYA_33220 PF00005 ABC transporter VYA_33220 PF03459 TOBE domain VYA_33230 PF00528 Binding-protein-dependent transport system inner membrane component VYA_33260 PF07685 CobB/CobQ-like glutamine amidotransferase domain VYA_33260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VYA_33280 PF04076 Bacterial OB fold (BOF) protein VYA_33300 PF08443 RimK-like ATP-grasp domain VYA_33300 PF18030 RimK PreATP-grasp domain VYA_33310 PF00155 Aminotransferase class I and II VYA_33320 PF12833 Helix-turn-helix domain VYA_33330 PF01554 MatE VYA_33350 PF03477 ATP cone domain VYA_33350 PF13597 Anaerobic ribonucleoside-triphosphate reductase VYA_33380 PF04143 Sulphur transport VYA_33400 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_33400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VYA_33430 PF01979 Amidohydrolase family VYA_33500 PF01594 AI-2E family transporter VYA_33520 PF00529 HlyD membrane-fusion protein of T1SS VYA_33520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_33550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VYA_33550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VYA_33560 PF00085 Thioredoxin VYA_33570 PF07690 Major Facilitator Superfamily VYA_33580 PF11756 Nitrous oxide-stimulated promoter VYA_33590 PF13302 Acetyltransferase (GNAT) domain VYA_33630 PF10414 Sirohaem synthase dimerisation region VYA_33630 PF14824 Sirohaem biosynthesis protein central VYA_33630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VYA_33640 PF01226 Formate/nitrite transporter VYA_33650 PF13806 Rieske-like [2Fe-2S] domain VYA_33660 PF18267 Rubredoxin NAD+ reductase C-terminal domain VYA_33660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VYA_33660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VYA_33660 PF04324 BFD-like [2Fe-2S] binding domain VYA_33660 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_33670 PF07694 5TMR of 5TMR-LYT VYA_33670 PF00990 Diguanylate cyclase, GGDEF domain VYA_33710 PF09330 D-lactate dehydrogenase, membrane binding VYA_33710 PF01565 FAD binding domain VYA_33720 PF05762 VWA domain containing CoxE-like protein VYA_33730 PF07728 AAA domain (dynein-related subfamily) VYA_33730 PF17868 AAA lid domain VYA_33730 PF12592 Protein of unknown function (DUF3763) VYA_33750 PF01212 Beta-eliminating lyase VYA_33760 PF00034 Cytochrome c VYA_33770 PF03606 C4-dicarboxylate anaerobic carrier VYA_33790 PF07690 Major Facilitator Superfamily VYA_33840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_33840 PF03466 LysR substrate binding domain VYA_33880 PF00664 ABC transporter transmembrane region VYA_33880 PF00005 ABC transporter VYA_33940 PF00501 AMP-binding enzyme VYA_33940 PF13193 AMP-binding enzyme C-terminal domain VYA_34000 PF00873 AcrB/AcrD/AcrF family VYA_34010 PF13533 Biotin-lipoyl like VYA_34030 PF03616 Sodium/glutamate symporter VYA_34040 PF01594 AI-2E family transporter VYA_34130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VYA_34130 PF18267 Rubredoxin NAD+ reductase C-terminal domain VYA_34130 PF13806 Rieske-like [2Fe-2S] domain VYA_34130 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_34130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VYA_34130 PF04324 BFD-like [2Fe-2S] binding domain VYA_34140 PF00005 ABC transporter VYA_34150 PF00528 Binding-protein-dependent transport system inner membrane component VYA_34170 PF03861 ANTAR domain VYA_34170 PF08376 Nitrate and nitrite sensing VYA_34180 PF01738 Dienelactone hydrolase family VYA_34190 PF00591 Glycosyl transferase family, a/b domain VYA_34190 PF02885 Glycosyl transferase family, helical bundle domain VYA_34200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VYA_34200 PF14824 Sirohaem biosynthesis protein central VYA_34200 PF10414 Sirohaem synthase dimerisation region VYA_34210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VYA_34210 PF01568 Molydopterin dinucleotide binding domain VYA_34210 PF00384 Molybdopterin oxidoreductase VYA_34230 PF03222 Tryptophan/tyrosine permease family VYA_34250 PF01483 Proprotein convertase P-domain VYA_34250 PF00082 Subtilase family VYA_34270 PF00245 Alkaline phosphatase VYA_34280 PF18719 ArlS sensor domain VYA_34280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_34280 PF00512 His Kinase A (phospho-acceptor) domain VYA_34290 PF00072 Response regulator receiver domain VYA_34290 PF00486 Transcriptional regulatory protein, C terminal VYA_34330 PF00012 Hsp70 protein VYA_34360 PF00676 Dehydrogenase E1 component VYA_34370 PF02779 Transketolase, pyrimidine binding domain VYA_34370 PF02780 Transketolase, C-terminal domain VYA_34380 PF00364 Biotin-requiring enzyme VYA_34380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VYA_34380 PF02817 e3 binding domain VYA_34390 PF00766 Electron transfer flavoprotein FAD-binding domain VYA_34390 PF01012 Electron transfer flavoprotein domain VYA_34400 PF01012 Electron transfer flavoprotein domain VYA_34420 PF02424 ApbE family VYA_34430 PF03358 NADPH-dependent FMN reductase VYA_34430 PF04205 FMN-binding domain VYA_34430 PF00890 FAD binding domain VYA_34440 PF02798 Glutathione S-transferase, N-terminal domain VYA_34440 PF00043 Glutathione S-transferase, C-terminal domain VYA_34450 PF03466 LysR substrate binding domain VYA_34450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_34480 PF00528 Binding-protein-dependent transport system inner membrane component VYA_34490 PF00528 Binding-protein-dependent transport system inner membrane component VYA_34500 PF00497 Bacterial extracellular solute-binding proteins, family 3 VYA_34510 PF00005 ABC transporter VYA_34550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VYA_34550 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_34570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VYA_34570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VYA_34580 PF00378 Enoyl-CoA hydratase/isomerase VYA_34590 PF00378 Enoyl-CoA hydratase/isomerase VYA_34600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_34600 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_34600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_34610 PF00171 Aldehyde dehydrogenase family VYA_34620 PF02803 Thiolase, C-terminal domain VYA_34620 PF00108 Thiolase, N-terminal domain VYA_34630 PF00376 MerR family regulatory protein VYA_34630 PF09278 MerR, DNA binding VYA_34640 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_34640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_34640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_34650 PF01039 Carboxyl transferase domain VYA_34660 PF00378 Enoyl-CoA hydratase/isomerase VYA_34670 PF00682 HMGL-like VYA_34690 PF00034 Cytochrome c VYA_34700 PF00115 Cytochrome C and Quinol oxidase polypeptide I VYA_34720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VYA_34720 PF00034 Cytochrome c VYA_34730 PF00871 Acetokinase family VYA_34740 PF00270 DEAD/DEAH box helicase VYA_34740 PF03880 DbpA RNA binding domain VYA_34740 PF00271 Helicase conserved C-terminal domain VYA_34750 PF08206 Ribonuclease B OB domain VYA_34750 PF00773 RNB domain VYA_34750 PF00575 S1 RNA binding domain VYA_34760 PF12833 Helix-turn-helix domain VYA_34780 PF12849 PBP superfamily domain VYA_34790 PF01575 MaoC like domain VYA_34830 PF03466 LysR substrate binding domain VYA_34830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_34840 PF12146 Serine aminopeptidase, S33 VYA_34960 PF08448 PAS fold VYA_34960 PF00990 Diguanylate cyclase, GGDEF domain VYA_34970 PF00860 Permease family VYA_34980 PF00005 ABC transporter VYA_35020 PF00271 Helicase conserved C-terminal domain VYA_35020 PF00270 DEAD/DEAH box helicase VYA_35030 PF02492 CobW/HypB/UreG, nucleotide-binding domain VYA_35030 PF07683 Cobalamin synthesis protein cobW C-terminal domain VYA_35050 PF01470 Pyroglutamyl peptidase VYA_35090 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) VYA_35120 PF12843 Putative quorum-sensing-regulated virulence factor VYA_35160 PF01329 Pterin 4 alpha carbinolamine dehydratase VYA_35170 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VYA_35180 PF00501 AMP-binding enzyme VYA_35180 PF13193 AMP-binding enzyme C-terminal domain VYA_35200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_35220 PF00892 EamA-like transporter family VYA_35250 PF00465 Iron-containing alcohol dehydrogenase VYA_35260 PF07995 Glucose / Sorbosone dehydrogenase VYA_35280 PF00210 Ferritin-like domain VYA_35290 PF00672 HAMP domain VYA_35290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_35310 PF02687 FtsX-like permease family VYA_35310 PF00005 ABC transporter VYA_35310 PF12704 MacB-like periplasmic core domain VYA_35320 PF02687 FtsX-like permease family VYA_35320 PF00005 ABC transporter VYA_35320 PF12704 MacB-like periplasmic core domain VYA_35350 PF00313 'Cold-shock' DNA-binding domain VYA_35410 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VYA_35410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VYA_35460 PF00196 Bacterial regulatory proteins, luxR family VYA_35460 PF00072 Response regulator receiver domain VYA_35470 PF13419 Haloacid dehalogenase-like hydrolase VYA_35480 PF00472 RF-1 domain VYA_35490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_35490 PF12729 Four helix bundle sensory module for signal transduction VYA_35490 PF00672 HAMP domain VYA_35500 PF00873 AcrB/AcrD/AcrF family VYA_35510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_35520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VYA_35530 PF07687 Peptidase dimerisation domain VYA_35530 PF01546 Peptidase family M20/M25/M40 VYA_35560 PF00072 Response regulator receiver domain VYA_35560 PF00196 Bacterial regulatory proteins, luxR family VYA_35570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_35570 PF07730 Histidine kinase VYA_35570 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VYA_35570 PF00672 HAMP domain VYA_35590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VYA_35590 PF00384 Molybdopterin oxidoreductase VYA_35590 PF01568 Molydopterin dinucleotide binding domain VYA_35600 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VYA_35610 PF03264 NapC/NirT cytochrome c family, N-terminal region VYA_35630 PF00561 alpha/beta hydrolase fold VYA_35630 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VYA_35650 PF02803 Thiolase, C-terminal domain VYA_35650 PF00108 Thiolase, N-terminal domain VYA_35660 PF00106 short chain dehydrogenase VYA_35670 PF07549 SecD/SecF GG Motif VYA_35670 PF02355 Protein export membrane protein VYA_35680 PF13721 SecD export protein N-terminal TM region VYA_35680 PF07549 SecD/SecF GG Motif VYA_35680 PF02355 Protein export membrane protein VYA_35730 PF01037 Lrp/AsnC ligand binding domain VYA_35730 PF13404 AsnC-type helix-turn-helix domain VYA_35750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_35750 PF00512 His Kinase A (phospho-acceptor) domain VYA_35750 PF09308 LuxQ, periplasmic VYA_35750 PF00072 Response regulator receiver domain VYA_35760 PF13407 Periplasmic binding protein domain VYA_35770 PF01541 GIY-YIG catalytic domain VYA_35780 PF04337 Protein of unknown function, DUF480 VYA_35800 PF04363 Protein of unknown function (DUF496) VYA_35810 PF01554 MatE VYA_35820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VYA_35830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VYA_35830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VYA_35990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_35990 PF03466 LysR substrate binding domain VYA_36010 PF00873 AcrB/AcrD/AcrF family VYA_36040 PF00155 Aminotransferase class I and II VYA_36040 PF00392 Bacterial regulatory proteins, gntR family VYA_36060 PF12833 Helix-turn-helix domain VYA_36080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_36080 PF00529 HlyD membrane-fusion protein of T1SS VYA_36090 PF03109 ABC1 family VYA_36100 PF01769 Divalent cation transporter VYA_36100 PF00571 CBS domain VYA_36100 PF03448 MgtE intracellular N domain VYA_36110 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VYA_36120 PF07969 Amidohydrolase family VYA_36150 PF01966 HD domain VYA_36170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VYA_36180 PF00255 Glutathione peroxidase VYA_36200 PF01323 DSBA-like thioredoxin domain VYA_36230 PF00106 short chain dehydrogenase VYA_36240 PF00072 Response regulator receiver domain VYA_36240 PF00486 Transcriptional regulatory protein, C terminal VYA_36250 PF00512 His Kinase A (phospho-acceptor) domain VYA_36250 PF00672 HAMP domain VYA_36250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_36280 PF08019 Phosphoethanolamine transferase EptA/EptB VYA_36280 PF00884 Sulfatase VYA_36300 PF07690 Major Facilitator Superfamily VYA_36350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_36350 PF03466 LysR substrate binding domain VYA_36360 PF02525 Flavodoxin-like fold VYA_36370 PF00999 Sodium/hydrogen exchanger family VYA_36370 PF02254 TrkA-N domain VYA_36390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_36390 PF03466 LysR substrate binding domain VYA_36440 PF00128 Alpha amylase, catalytic domain VYA_36460 PF01584 CheW-like domain VYA_36460 PF00072 Response regulator receiver domain VYA_36480 PF01243 Pyridoxamine 5'-phosphate oxidase VYA_36490 PF06228 Haem utilisation ChuX/HutX VYA_36500 PF04055 Radical SAM superfamily VYA_36510 PF03544 Gram-negative bacterial TonB protein C-terminal VYA_36520 PF01618 MotA/TolQ/ExbB proton channel family VYA_36530 PF02472 Biopolymer transport protein ExbD/TolR VYA_36550 PF01032 FecCD transport family VYA_36560 PF00005 ABC transporter VYA_36640 PF07729 FCD domain VYA_36640 PF00392 Bacterial regulatory proteins, gntR family VYA_36660 PF01467 Cytidylyltransferase-like VYA_36670 PF02540 NAD synthase VYA_36680 PF03473 MOSC domain VYA_36680 PF03476 MOSC N-terminal beta barrel domain VYA_36680 PF03476 MOSC N-terminal beta barrel domain VYA_36680 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_36680 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_36680 PF03473 MOSC domain VYA_36690 PF01679 Proteolipid membrane potential modulator VYA_36700 PF01979 Amidohydrolase family VYA_36710 PF05661 Protein of unknown function (DUF808) VYA_36780 PF08220 DeoR-like helix-turn-helix domain VYA_36780 PF00455 DeoR C terminal sensor domain VYA_36790 PF01791 DeoC/LacD family aldolase VYA_36800 PF00294 pfkB family carbohydrate kinase VYA_36810 PF07690 Major Facilitator Superfamily VYA_36870 PF00528 Binding-protein-dependent transport system inner membrane component VYA_36880 PF14785 Maltose transport system permease protein MalF P2 domain VYA_36880 PF00528 Binding-protein-dependent transport system inner membrane component VYA_36890 PF01547 Bacterial extracellular solute-binding protein VYA_36900 PF00005 ABC transporter VYA_36900 PF08402 TOBE domain VYA_36910 PF04266 ASCH domain VYA_36920 PF00440 Bacterial regulatory proteins, tetR family VYA_36920 PF16925 Tetracyclin repressor-like, C-terminal domain VYA_36930 PF00107 Zinc-binding dehydrogenase VYA_36930 PF16884 N-terminal domain of oxidoreductase VYA_36950 PF06628 Catalase-related immune-responsive VYA_36950 PF00199 Catalase VYA_36960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VYA_36960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VYA_36980 PF03466 LysR substrate binding domain VYA_36980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_37000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VYA_37020 PF12833 Helix-turn-helix domain VYA_37030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VYA_37030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VYA_37040 PF01238 Phosphomannose isomerase type I VYA_37060 PF02056 Family 4 glycosyl hydrolase VYA_37060 PF11975 Family 4 glycosyl hydrolase C-terminal domain VYA_37070 PF12833 Helix-turn-helix domain VYA_37090 PF01048 Phosphorylase superfamily VYA_37110 PF07670 Nucleoside recognition VYA_37110 PF01773 Na+ dependent nucleoside transporter N-terminus VYA_37110 PF07662 Na+ dependent nucleoside transporter C-terminus VYA_37120 PF02525 Flavodoxin-like fold VYA_37130 PF00860 Permease family VYA_37140 PF01979 Amidohydrolase family VYA_37160 PF01979 Amidohydrolase family VYA_37170 PF12838 4Fe-4S dicluster domain VYA_37170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VYA_37170 PF00384 Molybdopterin oxidoreductase VYA_37170 PF01568 Molydopterin dinucleotide binding domain VYA_37170 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VYA_37190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_37200 PF00873 AcrB/AcrD/AcrF family VYA_37250 PF08659 KR domain VYA_37250 PF00550 Phosphopantetheine attachment site VYA_37250 PF14765 Polyketide synthase dehydratase VYA_37250 PF02801 Beta-ketoacyl synthase, C-terminal domain VYA_37250 PF00698 Acyl transferase domain VYA_37250 PF00109 Beta-ketoacyl synthase, N-terminal domain VYA_37250 PF16197 Ketoacyl-synthetase C-terminal extension VYA_37250 PF08240 Alcohol dehydrogenase GroES-like domain VYA_37280 PF00293 NUDIX domain VYA_37290 PF00583 Acetyltransferase (GNAT) family VYA_37300 PF00326 Prolyl oligopeptidase family VYA_37300 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VYA_37320 PF00582 Universal stress protein family VYA_37340 PF02357 Transcription termination factor nusG VYA_37370 PF01734 Patatin-like phospholipase VYA_37380 PF05726 Pirin C-terminal cupin domain VYA_37380 PF02678 Pirin VYA_37390 PF00313 'Cold-shock' DNA-binding domain VYA_37420 PF00462 Glutaredoxin VYA_37420 PF08534 Redoxin VYA_37440 PF00768 D-alanyl-D-alanine carboxypeptidase VYA_37440 PF07943 Penicillin-binding protein 5, C-terminal domain VYA_37460 PF02028 BCCT, betaine/carnitine/choline family transporter VYA_37470 PF02525 Flavodoxin-like fold VYA_37480 PF03466 LysR substrate binding domain VYA_37480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_37490 PF02798 Glutathione S-transferase, N-terminal domain VYA_37510 PF01872 RibD C-terminal domain VYA_37520 PF01928 CYTH domain VYA_37560 PF00106 short chain dehydrogenase VYA_37580 PF03466 LysR substrate binding domain VYA_37580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_37590 PF12833 Helix-turn-helix domain VYA_37590 PF01497 Periplasmic binding protein VYA_37600 PF00155 Aminotransferase class I and II VYA_37650 PF00271 Helicase conserved C-terminal domain VYA_37650 PF00270 DEAD/DEAH box helicase VYA_37660 PF01965 DJ-1/PfpI family VYA_37690 PF00582 Universal stress protein family VYA_37700 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VYA_37730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_37730 PF03466 LysR substrate binding domain VYA_37740 PF00709 Adenylosuccinate synthetase VYA_37780 PF08240 Alcohol dehydrogenase GroES-like domain VYA_37780 PF00107 Zinc-binding dehydrogenase VYA_37790 PF02378 Phosphotransferase system, EIIC VYA_37790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VYA_37800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VYA_37810 PF00011 Hsp20/alpha crystallin family VYA_37820 PF00012 Hsp70 protein VYA_37830 PF00684 DnaJ central domain VYA_37830 PF00226 DnaJ domain VYA_37830 PF01556 DnaJ C terminal domain VYA_37840 PF03618 Kinase/pyrophosphorylase VYA_37850 PF00391 PEP-utilising enzyme, mobile domain VYA_37850 PF02896 PEP-utilising enzyme, TIM barrel domain VYA_37850 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VYA_37870 PF04976 DMSO reductase anchor subunit (DmsC) VYA_37880 PF13247 4Fe-4S dicluster domain VYA_37880 PF12800 4Fe-4S binding domain VYA_37890 PF00384 Molybdopterin oxidoreductase VYA_37890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VYA_37890 PF01568 Molydopterin dinucleotide binding domain VYA_37900 PF02613 Nitrate reductase delta subunit VYA_37920 PF00196 Bacterial regulatory proteins, luxR family VYA_37930 PF00579 tRNA synthetases class I (W and Y) VYA_37950 PF03466 LysR substrate binding domain VYA_37950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_37960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_37970 PF00873 AcrB/AcrD/AcrF family VYA_37980 PF02321 Outer membrane efflux protein VYA_37990 PF03616 Sodium/glutamate symporter VYA_38010 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VYA_38010 PF00703 Glycosyl hydrolases family 2 VYA_38010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VYA_38010 PF02837 Glycosyl hydrolases family 2, sugar binding domain VYA_38020 PF02028 BCCT, betaine/carnitine/choline family transporter VYA_38060 PF00873 AcrB/AcrD/AcrF family VYA_38090 PF00873 AcrB/AcrD/AcrF family VYA_38100 PF13533 Biotin-lipoyl like VYA_38110 PF13091 PLD-like domain VYA_38170 PF00486 Transcriptional regulatory protein, C terminal VYA_38190 PF18500 CadC C-terminal domain 1 VYA_38190 PF00486 Transcriptional regulatory protein, C terminal VYA_38210 PF00376 MerR family regulatory protein VYA_38210 PF09278 MerR, DNA binding VYA_38220 PF03144 Elongation factor Tu domain 2 VYA_38220 PF00679 Elongation factor G C-terminus VYA_38220 PF14492 Elongation Factor G, domain II VYA_38220 PF03764 Elongation factor G, domain IV VYA_38220 PF00009 Elongation factor Tu GTP binding domain VYA_38260 PF02001 Protein of unknown function DUF134 VYA_38280 PF00528 Binding-protein-dependent transport system inner membrane component VYA_38290 PF00005 ABC transporter VYA_38290 PF00571 CBS domain VYA_38300 PF04170 NlpE N-terminal domain VYA_38300 PF17185 NlpE C-terminal OB domain VYA_38310 PF03466 LysR substrate binding domain VYA_38310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38350 PF06942 GlpM protein VYA_38370 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VYA_38370 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VYA_38390 PF00857 Isochorismatase family VYA_38400 PF00080 Copper/zinc superoxide dismutase (SODC) VYA_38430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_38440 PF01641 SelR domain VYA_38440 PF01625 Peptide methionine sulfoxide reductase VYA_38480 PF00581 Rhodanese-like domain VYA_38520 PF03466 LysR substrate binding domain VYA_38520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38530 PF13409 Glutathione S-transferase, N-terminal domain VYA_38540 PF03358 NADPH-dependent FMN reductase VYA_38550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38550 PF03466 LysR substrate binding domain VYA_38560 PF09905 DNA-binding protein VF530 VYA_38570 PF12848 ABC transporter VYA_38570 PF00005 ABC transporter VYA_38600 PF07690 Major Facilitator Superfamily VYA_38610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38610 PF03466 LysR substrate binding domain VYA_38650 PF13533 Biotin-lipoyl like VYA_38670 PF01594 AI-2E family transporter VYA_38680 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VYA_38700 PF00175 Oxidoreductase NAD-binding domain VYA_38700 PF00970 Oxidoreductase FAD-binding domain VYA_38720 PF09905 DNA-binding protein VF530 VYA_38730 PF03466 LysR substrate binding domain VYA_38730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38750 PF03466 LysR substrate binding domain VYA_38750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_38770 PF12706 Beta-lactamase superfamily domain VYA_38800 PF00768 D-alanyl-D-alanine carboxypeptidase VYA_38800 PF07943 Penicillin-binding protein 5, C-terminal domain VYA_38810 PF00561 alpha/beta hydrolase fold VYA_38830 PF02469 Fasciclin domain VYA_38850 PF18416 N-acetylglucosamine binding protein domain 2 VYA_38850 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VYA_38880 PF00672 HAMP domain VYA_38880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_38880 PF17200 Single Cache domain 2 VYA_38890 PF01734 Patatin-like phospholipase VYA_38900 PF00465 Iron-containing alcohol dehydrogenase VYA_38910 PF00596 Class II Aldolase and Adducin N-terminal domain VYA_38920 PF05025 RbsD / FucU transport protein family VYA_38930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VYA_38930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VYA_38940 PF02952 L-fucose isomerase, C-terminal domain VYA_38940 PF07881 L-fucose isomerase, first N-terminal domain VYA_38940 PF07882 L-fucose isomerase, second N-terminal domain VYA_38950 PF07690 Major Facilitator Superfamily VYA_38960 PF00455 DeoR C terminal sensor domain VYA_38960 PF08220 DeoR-like helix-turn-helix domain VYA_38970 PF01914 MarC family integral membrane protein VYA_38980 PF05958 tRNA (Uracil-5-)-methyltransferase VYA_38990 PF00881 Nitroreductase family VYA_39050 PF00375 Sodium:dicarboxylate symporter family VYA_39060 PF06803 Protein of unknown function (DUF1232) VYA_39070 PF01546 Peptidase family M20/M25/M40 VYA_39070 PF07687 Peptidase dimerisation domain VYA_39080 PF07670 Nucleoside recognition VYA_39090 PF07670 Nucleoside recognition VYA_39100 PF00128 Alpha amylase, catalytic domain VYA_39110 PF00912 Transglycosylase VYA_39120 PF02806 Alpha amylase, C-terminal all-beta domain VYA_39120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VYA_39120 PF00128 Alpha amylase, catalytic domain VYA_39130 PF02446 4-alpha-glucanotransferase VYA_39140 PF00343 Carbohydrate phosphorylase VYA_39150 PF00196 Bacterial regulatory proteins, luxR family VYA_39150 PF17874 MalT-like TPR region VYA_39180 PF02630 SCO1/SenC VYA_39200 PF00367 phosphotransferase system, EIIB VYA_39200 PF02378 Phosphotransferase system, EIIC VYA_39210 PF03193 RsgA GTPase VYA_39220 PF00375 Sodium:dicarboxylate symporter family VYA_39230 PF08543 Phosphomethylpyrimidine kinase VYA_39250 PF13520 Amino acid permease VYA_39260 PF01276 Orn/Lys/Arg decarboxylase, major domain VYA_39260 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VYA_39260 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VYA_39290 PF17967 Pullulanase N2 domain VYA_39290 PF18494 Pullulanase Ins domain VYA_39290 PF03714 Bacterial pullanase-associated domain VYA_39290 PF11852 Domain of unknown function (DUF3372) VYA_39290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VYA_39310 PF02264 LamB porin VYA_39320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VYA_39320 PF00128 Alpha amylase, catalytic domain VYA_39330 PF00990 Diguanylate cyclase, GGDEF domain VYA_39330 PF17158 Membrane-associated sensor, integral membrane domain VYA_39340 PF02796 Helix-turn-helix domain of resolvase VYA_39340 PF00239 Resolvase, N terminal domain VYA_39350 PF07690 Major Facilitator Superfamily VYA_39360 PF00892 EamA-like transporter family VYA_39370 PF07715 TonB-dependent Receptor Plug Domain VYA_39370 PF00593 TonB dependent receptor VYA_39380 PF03466 LysR substrate binding domain VYA_39380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_39390 PF01497 Periplasmic binding protein VYA_39400 PF01032 FecCD transport family VYA_39410 PF01032 FecCD transport family VYA_39420 PF00005 ABC transporter VYA_39430 PF00440 Bacterial regulatory proteins, tetR family VYA_39430 PF08360 QacR-like protein, C-terminal region VYA_39450 PF13533 Biotin-lipoyl like VYA_39480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_39480 PF03466 LysR substrate binding domain VYA_39490 PF00857 Isochorismatase family VYA_39510 PF02629 CoA binding domain VYA_39510 PF00549 CoA-ligase VYA_39520 PF06545 Protein of unknown function (DUF1116) VYA_39530 PF00696 Amino acid kinase family VYA_39550 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VYA_39570 PF01136 Peptidase family U32 VYA_39570 PF16325 Peptidase family U32 C-terminal domain VYA_39600 PF00005 ABC transporter VYA_39610 PF02687 FtsX-like permease family VYA_39610 PF12704 MacB-like periplasmic core domain VYA_39660 PF10417 C-terminal domain of 1-Cys peroxiredoxin VYA_39660 PF00578 AhpC/TSA family VYA_39670 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_39670 PF13192 Thioredoxin domain VYA_39680 PF00313 'Cold-shock' DNA-binding domain VYA_39690 PF00202 Aminotransferase class-III VYA_39700 PF01037 Lrp/AsnC ligand binding domain VYA_39710 PF01321 Creatinase/Prolidase N-terminal domain VYA_39710 PF00557 Metallopeptidase family M24 VYA_39750 PF12833 Helix-turn-helix domain VYA_39760 PF06441 Epoxide hydrolase N terminus VYA_39820 PF12323 Helix-turn-helix domain VYA_39820 PF01385 Probable transposase VYA_39820 PF07282 Putative transposase DNA-binding domain VYA_39850 PF00271 Helicase conserved C-terminal domain VYA_39850 PF00270 DEAD/DEAH box helicase VYA_39870 PF07859 alpha/beta hydrolase fold VYA_39890 PF03466 LysR substrate binding domain VYA_39890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_39900 PF03786 D-mannonate dehydratase (UxuA) VYA_39910 PF01232 Mannitol dehydrogenase Rossmann domain VYA_39910 PF08125 Mannitol dehydrogenase C-terminal domain VYA_39920 PF02614 Glucuronate isomerase VYA_39930 PF00294 pfkB family carbohydrate kinase VYA_39940 PF01081 KDPG and KHG aldolase VYA_39970 PF00703 Glycosyl hydrolases family 2 VYA_39970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VYA_39970 PF02837 Glycosyl hydrolases family 2, sugar binding domain VYA_39980 PF10688 Bacterial inner membrane protein VYA_39990 PF07729 FCD domain VYA_39990 PF00392 Bacterial regulatory proteins, gntR family VYA_40000 PF03573 outer membrane porin, OprD family VYA_40030 PF00664 ABC transporter transmembrane region VYA_40030 PF00005 ABC transporter VYA_40050 PF01037 Lrp/AsnC ligand binding domain VYA_40100 PF00474 Sodium:solute symporter family VYA_40120 PF00171 Aldehyde dehydrogenase family VYA_40120 PF01619 Proline dehydrogenase VYA_40120 PF14850 DNA-binding domain of Proline dehydrogenase VYA_40120 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VYA_40130 PF12833 Helix-turn-helix domain VYA_40150 PF01243 Pyridoxamine 5'-phosphate oxidase VYA_40150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VYA_40160 PF00512 His Kinase A (phospho-acceptor) domain VYA_40160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_40160 PF02743 Cache domain VYA_40170 PF02954 Bacterial regulatory protein, Fis family VYA_40170 PF00072 Response regulator receiver domain VYA_40170 PF00158 Sigma-54 interaction domain VYA_40180 PF00529 HlyD membrane-fusion protein of T1SS VYA_40210 PF03412 Peptidase C39 family VYA_40210 PF00005 ABC transporter VYA_40210 PF00664 ABC transporter transmembrane region VYA_40230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VYA_40240 PF00132 Bacterial transferase hexapeptide (six repeats) VYA_40260 PF13718 GNAT acetyltransferase 2 VYA_40260 PF05127 Helicase VYA_40270 PF08775 ParB family VYA_40270 PF02195 ParB-like nuclease domain VYA_40280 PF13614 AAA domain VYA_40280 PF18607 ParA helix turn helix domain VYA_40320 PF01709 Transcriptional regulator VYA_40330 PF01098 Cell cycle protein VYA_40350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_40360 PF03466 LysR substrate binding domain VYA_40360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_40380 PF00005 ABC transporter VYA_40420 PF06580 Histidine kinase VYA_40420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_40420 PF13492 GAF domain VYA_40420 PF07694 5TMR of 5TMR-LYT VYA_40430 PF00072 Response regulator receiver domain VYA_40430 PF04397 LytTr DNA-binding domain VYA_40450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VYA_40470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_40470 PF03466 LysR substrate binding domain VYA_40580 PF02630 SCO1/SenC VYA_40640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_40640 PF03466 LysR substrate binding domain VYA_40660 PF03616 Sodium/glutamate symporter VYA_40680 PF00005 ABC transporter VYA_40690 PF03616 Sodium/glutamate symporter VYA_40710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VYA_40740 PF03466 LysR substrate binding domain VYA_40740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_40770 PF06029 AlkA N-terminal domain VYA_40770 PF00730 HhH-GPD superfamily base excision DNA repair protein VYA_40780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VYA_40780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VYA_40800 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VYA_40810 PF03600 Citrate transporter VYA_40820 PF01168 Alanine racemase, N-terminal domain VYA_40820 PF00842 Alanine racemase, C-terminal domain VYA_40820 PF01757 Acyltransferase family VYA_40860 PF06865 Pyrimidine/purine nucleoside phosphorylase VYA_40890 PF00356 Bacterial regulatory proteins, lacI family VYA_40900 PF00356 Bacterial regulatory proteins, lacI family VYA_40910 PF07745 Glycosyl hydrolase family 53 VYA_40920 PF00248 Aldo/keto reductase family VYA_40930 PF00248 Aldo/keto reductase family VYA_40970 PF13610 DDE domain VYA_40980 PF00302 Chloramphenicol acetyltransferase VYA_40990 PF01609 Transposase DDE domain VYA_40990 PF05598 Transposase domain (DUF772) VYA_41010 PF00809 Pterin binding enzyme VYA_41020 PF07690 Major Facilitator Superfamily VYA_41170 PF03764 Elongation factor G, domain IV VYA_41170 PF00009 Elongation factor Tu GTP binding domain VYA_41170 PF00679 Elongation factor G C-terminus VYA_41170 PF14492 Elongation Factor G, domain II VYA_41190 PF12833 Helix-turn-helix domain VYA_41200 PF00440 Bacterial regulatory proteins, tetR family VYA_41210 PF07690 Major Facilitator Superfamily VYA_41220 PF00440 Bacterial regulatory proteins, tetR family VYA_41220 PF02909 Tetracyclin repressor-like, C-terminal domain VYA_41260 PF03616 Sodium/glutamate symporter VYA_41430 PF00528 Binding-protein-dependent transport system inner membrane component VYA_41500 PF00005 ABC transporter VYA_41740 PF13614 AAA domain VYA_42030 PF05922 Peptidase inhibitor I9 VYA_42030 PF00082 Subtilase family VYA_42220 PF14743 DNA ligase OB-like domain VYA_42220 PF01068 ATP dependent DNA ligase domain VYA_42330 PF13361 UvrD-like helicase C-terminal domain VYA_42330 PF00580 UvrD/REP helicase N-terminal domain VYA_42710 PF00672 HAMP domain VYA_42710 PF17149 Periplasmic sensor domain found in signal transduction proteins VYA_42710 PF00072 Response regulator receiver domain VYA_42710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_42710 PF00512 His Kinase A (phospho-acceptor) domain VYA_42710 PF01627 Hpt domain VYA_42770 PF00270 DEAD/DEAH box helicase VYA_42770 PF00271 Helicase conserved C-terminal domain VYA_42770 PF17764 3′ DNA-binding domain (3′BD) VYA_42770 PF18074 Primosomal protein N C-terminal domain VYA_42770 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VYA_42990 PF00580 UvrD/REP helicase N-terminal domain VYA_42990 PF13361 UvrD-like helicase C-terminal domain VYA_43190 PF16200 C-terminal region of band_7 VYA_43190 PF01145 SPFH domain / Band 7 family VYA_43250 PF00929 Exonuclease VYA_43350 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VYA_43360 PF13737 Transposase DDE domain VYA_43410 PF01381 Helix-turn-helix VYA_43430 PF00578 AhpC/TSA family VYA_43580 PF11799 impB/mucB/samB family C-terminal domain VYA_43580 PF00817 impB/mucB/samB family VYA_43600 PF01527 Transposase VYA_43610 PF00665 Integrase core domain VYA_43630 PF10544 T5orf172 domain VYA_43840 PF01555 DNA methylase VYA_43880 PF02311 AraC-like ligand binding domain VYA_43880 PF12833 Helix-turn-helix domain VYA_43900 PF11762 L-arabinose isomerase C-terminal domain VYA_43900 PF02610 L-arabinose isomerase VYA_43910 PF00596 Class II Aldolase and Adducin N-terminal domain VYA_43920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VYA_43920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VYA_43930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VYA_43940 PF00005 ABC transporter VYA_43950 PF02653 Branched-chain amino acid transport system / permease component VYA_43970 PF13276 HTH-like domain VYA_43970 PF00665 Integrase core domain VYA_43970 PF13333 Integrase core domain VYA_43990 PF00672 HAMP domain VYA_43990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_43990 PF12729 Four helix bundle sensory module for signal transduction VYA_44000 PF10509 Galactokinase galactose-binding signature VYA_44000 PF00288 GHMP kinases N terminal domain VYA_44000 PF08544 GHMP kinases C terminal VYA_44010 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VYA_44010 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VYA_44020 PF16363 GDP-mannose 4,6 dehydratase VYA_44030 PF00672 HAMP domain VYA_44030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VYA_44030 PF12729 Four helix bundle sensory module for signal transduction VYA_44050 PF13358 DDE superfamily endonuclease VYA_44060 PF02264 LamB porin VYA_44070 PF02449 Beta-galactosidase VYA_44070 PF08533 Beta-galactosidase C-terminal domain VYA_44070 PF08532 Beta-galactosidase trimerisation domain VYA_44080 PF07745 Glycosyl hydrolase family 53 VYA_44090 PF00528 Binding-protein-dependent transport system inner membrane component VYA_44100 PF00528 Binding-protein-dependent transport system inner membrane component VYA_44110 PF13416 Bacterial extracellular solute-binding protein VYA_44120 PF00005 ABC transporter VYA_44140 PF00266 Aminotransferase class-V VYA_44150 PF00202 Aminotransferase class-III VYA_44160 PF13419 Haloacid dehalogenase-like hydrolase VYA_44190 PF07859 alpha/beta hydrolase fold VYA_44210 PF01638 HxlR-like helix-turn-helix VYA_44230 PF01177 Asp/Glu/Hydantoin racemase VYA_44240 PF01569 PAP2 superfamily VYA_44250 PF13382 Adenine deaminase C-terminal domain VYA_44250 PF01979 Amidohydrolase family VYA_44260 PF07883 Cupin domain VYA_44260 PF12833 Helix-turn-helix domain VYA_44350 PF01575 MaoC like domain VYA_44370 PF00501 AMP-binding enzyme VYA_44370 PF13193 AMP-binding enzyme C-terminal domain VYA_44380 PF12697 Alpha/beta hydrolase family VYA_44390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VYA_44390 PF07992 Pyridine nucleotide-disulphide oxidoreductase VYA_44400 PF00171 Aldehyde dehydrogenase family VYA_44450 PF07044 Protein of unknown function (DUF1329) VYA_44460 PF01613 Flavin reductase like domain VYA_44470 PF01557 Fumarylacetoacetate (FAA) hydrolase family VYA_44480 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation VYA_44480 PF01118 Semialdehyde dehydrogenase, NAD binding domain VYA_44490 PF07836 DmpG-like communication domain VYA_44490 PF00682 HMGL-like VYA_44510 PF02195 ParB-like nuclease domain VYA_44510 PF08775 ParB family VYA_44520 PF13614 AAA domain VYA_44540 PF07690 Major Facilitator Superfamily VYA_44550 PF16123 Hydroxyacylglutathione hydrolase C-terminus VYA_44550 PF00753 Metallo-beta-lactamase superfamily VYA_44560 PF00501 AMP-binding enzyme VYA_44560 PF13193 AMP-binding enzyme C-terminal domain VYA_44570 PF00890 FAD binding domain VYA_44580 PF13193 AMP-binding enzyme C-terminal domain VYA_44580 PF00501 AMP-binding enzyme VYA_44600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VYA_44640 PF18642 Immunomodulating metalloprotease helical domain VYA_44640 PF18650 Immunomodulating metalloprotease N-terminal domain VYA_44640 PF13402 Peptidase M60, enhancin and enhancin-like VYA_44660 PF01575 MaoC like domain VYA_44670 PF02803 Thiolase, C-terminal domain VYA_44670 PF00108 Thiolase, N-terminal domain VYA_44680 PF00378 Enoyl-CoA hydratase/isomerase VYA_44700 PF17158 Membrane-associated sensor, integral membrane domain VYA_44700 PF00990 Diguanylate cyclase, GGDEF domain VYA_44760 PF01451 Low molecular weight phosphotyrosine protein phosphatase VYA_44790 PF00535 Glycosyl transferase family 2 VYA_44810 PF00535 Glycosyl transferase family 2 VYA_44850 PF00512 His Kinase A (phospho-acceptor) domain VYA_44850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VYA_44860 PF02954 Bacterial regulatory protein, Fis family VYA_44860 PF00158 Sigma-54 interaction domain VYA_44860 PF00072 Response regulator receiver domain VYA_44870 PF02899 Phage integrase, N-terminal SAM-like domain VYA_44870 PF00589 Phage integrase family VYA_44880 PF13439 Glycosyltransferase Family 4 VYA_44880 PF00534 Glycosyl transferases group 1 VYA_44890 PF08544 GHMP kinases C terminal VYA_44890 PF00288 GHMP kinases N terminal domain VYA_44900 PF13580 SIS domain VYA_44910 PF00483 Nucleotidyl transferase VYA_44930 PF01040 UbiA prenyltransferase family VYA_45000 PF13614 AAA domain VYA_45000 PF13807 G-rich domain on putative tyrosine kinase VYA_45000 PF02706 Chain length determinant protein VYA_45030 PF02397 Bacterial sugar transferase VYA_45040 PF01522 Polysaccharide deacetylase VYA_45080 PF00733 Asparagine synthase VYA_45080 PF13537 Glutamine amidotransferase domain VYA_45090 PF00534 Glycosyl transferases group 1 VYA_45090 PF13439 Glycosyltransferase Family 4 VYA_45100 PF13439 Glycosyltransferase Family 4 VYA_45100 PF00534 Glycosyl transferases group 1 VYA_45110 PF09318 Glycosyl transferase 1 domain A VYA_45110 PF00534 Glycosyl transferases group 1 VYA_45140 PF02811 PHP domain VYA_45140 PF11490 DNA polymerase III polC-type N-terminus II VYA_45140 PF07733 Bacterial DNA polymerase III alpha NTPase domain VYA_45140 PF00929 Exonuclease VYA_45140 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VYA_45140 PF14579 Helix-hairpin-helix motif VYA_45160 PF00483 Nucleotidyl transferase VYA_45170 PF07722 Peptidase C26 VYA_45180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VYA_45180 PF00391 PEP-utilising enzyme, mobile domain VYA_45190 PF01507 Phosphoadenosine phosphosulfate reductase family VYA_45200 PF00009 Elongation factor Tu GTP binding domain VYA_45210 PF02080 TrkA-C domain VYA_45210 PF03600 Citrate transporter VYA_45230 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_45230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_45230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_45240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_45240 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_45240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_45300 PF00378 Enoyl-CoA hydratase/isomerase VYA_45320 PF00766 Electron transfer flavoprotein FAD-binding domain VYA_45320 PF01012 Electron transfer flavoprotein domain VYA_45330 PF01012 Electron transfer flavoprotein domain VYA_45370 PF12833 Helix-turn-helix domain VYA_45370 PF02311 AraC-like ligand binding domain VYA_45380 PF00175 Oxidoreductase NAD-binding domain VYA_45380 PF00111 2Fe-2S iron-sulfur cluster binding domain VYA_45380 PF00970 Oxidoreductase FAD-binding domain VYA_45390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_45390 PF08028 Acyl-CoA dehydrogenase, C-terminal domain VYA_45440 PF07549 SecD/SecF GG Motif VYA_45440 PF02355 Protein export membrane protein VYA_45440 PF13721 SecD export protein N-terminal TM region VYA_45450 PF07549 SecD/SecF GG Motif VYA_45450 PF02355 Protein export membrane protein VYA_45460 PF01699 Sodium/calcium exchanger protein VYA_45480 PF00571 CBS domain VYA_45480 PF03448 MgtE intracellular N domain VYA_45480 PF01769 Divalent cation transporter VYA_45490 PF01914 MarC family integral membrane protein VYA_45500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_45500 PF03466 LysR substrate binding domain VYA_45510 PF00924 Mechanosensitive ion channel VYA_45540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VYA_45540 PF00529 HlyD membrane-fusion protein of T1SS VYA_45550 PF01594 AI-2E family transporter VYA_45560 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VYA_45560 PF12833 Helix-turn-helix domain VYA_45570 PF02810 SEC-C motif VYA_45570 PF01043 SecA preprotein cross-linking domain VYA_45570 PF07516 SecA Wing and Scaffold domain VYA_45570 PF07517 SecA DEAD-like domain VYA_45580 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VYA_45590 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VYA_45600 PF01425 Amidase VYA_45610 PF00106 short chain dehydrogenase VYA_45620 PF02803 Thiolase, C-terminal domain VYA_45620 PF00108 Thiolase, N-terminal domain VYA_45630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_45630 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_45630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_45640 PF02770 Acyl-CoA dehydrogenase, middle domain VYA_45640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VYA_45640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VYA_45650 PF00378 Enoyl-CoA hydratase/isomerase VYA_45660 PF03060 Nitronate monooxygenase VYA_45670 PF00378 Enoyl-CoA hydratase/isomerase VYA_45680 PF01144 Coenzyme A transferase VYA_45690 PF01144 Coenzyme A transferase VYA_45700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VYA_45780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VYA_45780 PF03466 LysR substrate binding domain VYA_45790 PF13091 PLD-like domain VYA_45810 PF00135 Carboxylesterase family VYA_45840 PF03458 UPF0126 domain VYA_45870 PF01103 Surface antigen VYA_45870 PF07244 Surface antigen variable number repeat VYA_45870 PF17243 POTRA domain TamA domain 1 VYA_45880 PF07969 Amidohydrolase family VYA_45900 PF01548 Transposase VYA_45900 PF02371 Transposase IS116/IS110/IS902 family VYA_45980 PF00392 Bacterial regulatory proteins, gntR family VYA_45980 PF07702 UTRA domain